Query 003355
Match_columns 827
No_of_seqs 373 out of 2786
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 21:56:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 1E-106 3E-111 944.0 47.9 649 20-742 2-655 (657)
2 PF01031 Dynamin_M: Dynamin ce 100.0 1.1E-54 2.3E-59 472.2 23.0 286 235-520 2-289 (295)
3 smart00053 DYNc Dynamin, GTPas 100.0 1.4E-46 2.9E-51 392.6 26.3 239 22-262 1-239 (240)
4 KOG0447 Dynamin-like GTP bindi 100.0 8E-33 1.7E-37 300.9 31.9 286 21-312 280-581 (980)
5 smart00302 GED Dynamin GTPase 99.9 1.1E-26 2.4E-31 207.7 12.2 91 650-740 2-92 (92)
6 PF02212 GED: Dynamin GTPase e 99.9 1.2E-22 2.6E-27 182.1 11.7 92 649-740 1-92 (92)
7 PF00350 Dynamin_N: Dynamin fa 99.9 1.3E-21 2.8E-26 194.6 16.5 166 50-225 1-168 (168)
8 COG0699 Predicted GTPases (dyn 99.6 2E-13 4.3E-18 160.9 29.2 537 97-735 2-542 (546)
9 PRK09866 hypothetical protein; 99.6 4.4E-13 9.4E-18 153.8 30.2 220 27-262 53-343 (741)
10 COG0218 Predicted GTPase [Gene 99.6 3.1E-14 6.8E-19 142.5 16.3 128 45-233 22-153 (200)
11 COG1159 Era GTPase [General fu 99.5 6.4E-14 1.4E-18 147.6 13.8 125 49-233 8-132 (298)
12 COG0486 ThdF Predicted GTPase 99.5 1.9E-12 4E-17 144.0 22.6 175 21-261 190-365 (454)
13 PF02421 FeoB_N: Ferrous iron 99.5 1E-13 2.2E-18 135.9 7.5 118 49-230 2-120 (156)
14 COG1160 Predicted GTPases [Gen 99.5 1.4E-12 2.9E-17 144.8 16.7 123 48-229 4-126 (444)
15 TIGR00436 era GTP-binding prot 99.4 1.7E-12 3.6E-17 139.8 16.2 120 49-230 2-122 (270)
16 PRK00089 era GTPase Era; Revie 99.4 2E-11 4.3E-16 132.9 19.8 122 48-230 6-128 (292)
17 COG1160 Predicted GTPases [Gen 99.4 3.9E-12 8.4E-17 141.2 12.9 153 21-231 149-305 (444)
18 COG3596 Predicted GTPase [Gene 99.4 8.2E-12 1.8E-16 130.0 14.3 183 46-307 37-225 (296)
19 TIGR03156 GTP_HflX GTP-binding 99.4 1.8E-11 3.9E-16 136.2 17.7 147 24-229 162-315 (351)
20 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 2.5E-11 5.4E-16 124.3 16.4 133 49-240 2-140 (196)
21 TIGR03598 GTPase_YsxC ribosome 99.3 3.6E-11 7.8E-16 121.2 15.7 125 45-230 16-144 (179)
22 PRK00454 engB GTP-binding prot 99.3 7.2E-11 1.6E-15 120.1 17.3 126 45-231 22-151 (196)
23 KOG0448 Mitofusin 1 GTPase, in 99.3 8.6E-10 1.9E-14 126.4 27.2 173 46-241 108-287 (749)
24 cd04163 Era Era subfamily. Er 99.3 1.4E-10 3E-15 113.2 16.3 122 47-229 3-125 (168)
25 PRK11058 GTPase HflX; Provisio 99.3 1.4E-10 3.1E-15 132.1 18.5 126 45-229 195-323 (426)
26 cd01895 EngA2 EngA2 subfamily. 99.3 1.6E-10 3.5E-15 113.9 16.4 127 47-230 2-128 (174)
27 PRK05291 trmE tRNA modificatio 99.3 4.3E-10 9.3E-15 129.4 22.2 145 23-230 190-336 (449)
28 cd01897 NOG NOG1 is a nucleola 99.2 1.7E-10 3.7E-15 114.1 16.3 25 48-72 1-25 (168)
29 PF01926 MMR_HSR1: 50S ribosom 99.2 9.1E-11 2E-15 109.5 13.5 115 49-224 1-116 (116)
30 PRK00093 GTP-binding protein D 99.2 3.6E-10 7.8E-15 130.0 20.5 126 46-229 172-298 (435)
31 COG1084 Predicted GTPase [Gene 99.2 2.7E-10 5.9E-15 121.4 17.4 141 29-231 151-296 (346)
32 TIGR00450 mnmE_trmE_thdF tRNA 99.2 1.3E-09 2.8E-14 124.9 24.3 148 21-230 177-325 (442)
33 TIGR03594 GTPase_EngA ribosome 99.2 3.7E-10 8E-15 129.6 19.9 150 22-229 145-297 (429)
34 COG0370 FeoB Fe2+ transport sy 99.2 5.6E-11 1.2E-15 137.5 13.0 146 48-261 4-153 (653)
35 cd01878 HflX HflX subfamily. 99.2 2.5E-10 5.4E-15 117.3 16.2 127 45-230 39-168 (204)
36 PRK03003 GTP-binding protein D 99.2 4.4E-10 9.6E-15 130.4 19.5 149 22-229 184-336 (472)
37 PRK03003 GTP-binding protein D 99.2 3.1E-10 6.8E-15 131.7 18.2 124 45-229 36-160 (472)
38 cd01876 YihA_EngB The YihA (En 99.2 2.9E-10 6.3E-15 111.3 15.2 122 49-231 1-126 (170)
39 PRK15494 era GTPase Era; Provi 99.2 2.1E-10 4.5E-15 127.5 15.7 150 48-260 53-204 (339)
40 PRK12299 obgE GTPase CgtA; Rev 99.2 3.9E-10 8.5E-15 124.7 17.7 125 46-230 157-286 (335)
41 PRK12298 obgE GTPase CgtA; Rev 99.2 5E-10 1.1E-14 126.3 18.2 123 47-230 159-290 (390)
42 PRK09518 bifunctional cytidyla 99.2 8.2E-10 1.8E-14 134.2 20.8 151 21-230 420-576 (712)
43 cd01853 Toc34_like Toc34-like 99.2 3.5E-10 7.7E-15 120.0 15.2 131 44-231 28-165 (249)
44 TIGR03594 GTPase_EngA ribosome 99.2 3.4E-10 7.3E-15 129.9 16.3 121 49-230 1-122 (429)
45 PF04548 AIG1: AIG1 family; I 99.2 1.1E-10 2.4E-15 121.2 11.1 132 49-239 2-139 (212)
46 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 4.1E-10 9E-15 111.1 14.5 116 48-229 1-116 (168)
47 COG2262 HflX GTPases [General 99.2 1.1E-09 2.4E-14 120.1 18.2 168 43-306 188-358 (411)
48 TIGR00991 3a0901s02IAP34 GTP-b 99.2 6.6E-10 1.4E-14 119.9 16.0 150 30-240 22-179 (313)
49 cd01894 EngA1 EngA1 subfamily. 99.1 5.8E-10 1.3E-14 108.4 14.2 76 148-230 45-120 (157)
50 cd01898 Obg Obg subfamily. Th 99.1 6.4E-10 1.4E-14 110.1 14.4 24 49-72 2-25 (170)
51 PRK12296 obgE GTPase CgtA; Rev 99.1 9.7E-10 2.1E-14 126.3 17.6 26 46-71 158-183 (500)
52 cd04104 p47_IIGP_like p47 (47- 99.1 9.7E-10 2.1E-14 112.8 15.7 121 48-230 2-122 (197)
53 PRK00093 GTP-binding protein D 99.1 7.3E-10 1.6E-14 127.4 15.8 122 47-229 1-123 (435)
54 PF05049 IIGP: Interferon-indu 99.1 3.1E-10 6.8E-15 125.5 11.8 133 24-227 16-153 (376)
55 PRK04213 GTP-binding protein; 99.1 1.7E-09 3.7E-14 110.8 16.3 125 45-230 7-145 (201)
56 TIGR02729 Obg_CgtA Obg family 99.1 1.3E-09 2.9E-14 120.3 16.5 125 46-230 156-288 (329)
57 KOG1954 Endocytosis/signaling 99.1 6.2E-10 1.4E-14 118.9 13.1 170 45-232 56-228 (532)
58 cd04164 trmE TrmE (MnmE, ThdF, 99.1 2.1E-09 4.7E-14 104.3 16.0 120 49-230 3-122 (157)
59 cd00880 Era_like Era (E. coli 99.1 1.9E-09 4E-14 103.8 15.2 77 147-231 44-120 (163)
60 PRK09518 bifunctional cytidyla 99.1 1.4E-09 3E-14 132.2 16.8 123 46-229 274-397 (712)
61 KOG1423 Ras-like GTPase ERA [C 99.1 1.1E-09 2.5E-14 115.0 13.5 129 47-233 72-203 (379)
62 cd04171 SelB SelB subfamily. 99.1 2.4E-09 5.1E-14 105.0 15.2 67 148-230 51-119 (164)
63 KOG1191 Mitochondrial GTPase [ 99.1 5.9E-09 1.3E-13 116.1 19.5 129 46-233 267-407 (531)
64 PRK12297 obgE GTPase CgtA; Rev 99.1 3.4E-09 7.3E-14 120.3 17.7 120 47-228 158-287 (424)
65 cd01866 Rab2 Rab2 subfamily. 99.1 2.6E-09 5.7E-14 106.2 14.7 117 47-229 4-123 (168)
66 PRK09554 feoB ferrous iron tra 99.1 3E-09 6.6E-14 129.1 17.8 150 48-261 4-157 (772)
67 cd01861 Rab6 Rab6 subfamily. 99.1 2.4E-09 5.1E-14 105.1 13.9 115 49-229 2-119 (161)
68 PF10662 PduV-EutP: Ethanolami 99.0 1.8E-09 3.9E-14 103.9 12.2 102 48-230 2-104 (143)
69 cd00154 Rab Rab family. Rab G 99.0 2.2E-09 4.7E-14 103.9 12.9 115 48-228 1-118 (159)
70 cd01868 Rab11_like Rab11-like. 99.0 3.1E-09 6.7E-14 104.9 14.2 116 48-229 4-122 (165)
71 cd00881 GTP_translation_factor 99.0 2.7E-09 5.8E-14 107.2 13.8 67 148-229 62-128 (189)
72 cd01879 FeoB Ferrous iron tran 99.0 4.2E-09 9.2E-14 102.7 14.1 71 149-230 44-116 (158)
73 cd01850 CDC_Septin CDC/Septin. 99.0 3.5E-09 7.7E-14 114.3 13.5 136 49-230 6-158 (276)
74 TIGR00993 3a0901s04IAP86 chlor 99.0 5.7E-09 1.2E-13 120.8 15.6 126 48-230 119-251 (763)
75 cd01890 LepA LepA subfamily. 99.0 6.4E-09 1.4E-13 104.1 14.2 67 148-229 67-133 (179)
76 cd01867 Rab8_Rab10_Rab13_like 99.0 4.4E-09 9.5E-14 104.4 12.9 117 47-229 3-122 (167)
77 cd01864 Rab19 Rab19 subfamily. 99.0 1.4E-08 3E-13 100.4 16.1 68 149-230 53-123 (165)
78 cd04142 RRP22 RRP22 subfamily. 99.0 1.4E-08 3.1E-13 104.3 16.4 123 49-229 2-130 (198)
79 cd04106 Rab23_lke Rab23-like s 99.0 8.4E-09 1.8E-13 101.3 13.5 69 148-230 51-121 (162)
80 cd04112 Rab26 Rab26 subfamily. 99.0 1.6E-08 3.4E-13 103.0 16.0 67 149-229 51-120 (191)
81 cd04101 RabL4 RabL4 (Rab-like4 99.0 1.2E-08 2.5E-13 100.6 14.3 68 148-230 52-122 (164)
82 cd04157 Arl6 Arl6 subfamily. 99.0 1.3E-08 2.9E-13 99.7 14.6 68 149-230 46-119 (162)
83 cd04113 Rab4 Rab4 subfamily. 98.9 1.1E-08 2.3E-13 100.6 13.9 115 49-229 2-119 (161)
84 cd04124 RabL2 RabL2 subfamily. 98.9 1.5E-08 3.2E-13 100.1 14.9 65 149-228 50-117 (161)
85 smart00175 RAB Rab subfamily o 98.9 1.5E-08 3.2E-13 99.5 14.6 67 149-229 50-119 (164)
86 cd01865 Rab3 Rab3 subfamily. 98.9 1.3E-08 2.8E-13 100.8 14.2 68 149-230 51-121 (165)
87 cd01862 Rab7 Rab7 subfamily. 98.9 1.7E-08 3.6E-13 100.0 14.8 115 49-229 2-123 (172)
88 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.9 1E-08 2.2E-13 101.5 13.0 67 149-229 52-121 (166)
89 cd01860 Rab5_related Rab5-rela 98.9 9.1E-09 2E-13 101.1 12.6 26 49-74 3-28 (163)
90 cd01881 Obg_like The Obg-like 98.9 4.5E-09 9.7E-14 104.4 10.4 21 52-72 1-21 (176)
91 cd04122 Rab14 Rab14 subfamily. 98.9 1.4E-08 3.1E-13 100.5 14.0 117 48-230 3-122 (166)
92 cd04145 M_R_Ras_like M-Ras/R-R 98.9 1.2E-08 2.5E-13 100.4 13.1 67 149-229 51-121 (164)
93 cd04136 Rap_like Rap-like subf 98.9 9.5E-09 2.1E-13 100.9 12.5 25 48-72 2-26 (163)
94 cd04119 RJL RJL (RabJ-Like) su 98.9 1.1E-08 2.3E-13 100.7 12.8 24 49-72 2-25 (168)
95 cd04159 Arl10_like Arl10-like 98.9 2.4E-08 5.2E-13 96.7 14.8 69 148-230 44-116 (159)
96 cd04165 GTPBP1_like GTPBP1-lik 98.9 1.8E-08 3.8E-13 105.6 14.5 71 146-230 82-153 (224)
97 PF00009 GTP_EFTU: Elongation 98.9 6E-09 1.3E-13 105.9 10.7 69 145-228 67-135 (188)
98 cd04123 Rab21 Rab21 subfamily. 98.9 2.1E-08 4.6E-13 97.9 14.1 67 149-229 50-119 (162)
99 cd04127 Rab27A Rab27a subfamil 98.9 1.5E-08 3.2E-13 101.7 13.1 67 149-229 64-134 (180)
100 smart00173 RAS Ras subfamily o 98.9 1E-08 2.2E-13 100.9 11.8 24 49-72 2-25 (164)
101 PRK15467 ethanolamine utilizat 98.9 3.3E-08 7.2E-13 97.8 15.3 23 49-71 3-25 (158)
102 cd04120 Rab12 Rab12 subfamily. 98.9 4.2E-08 9E-13 101.2 15.7 68 148-229 49-119 (202)
103 cd01893 Miro1 Miro1 subfamily. 98.9 5E-08 1.1E-12 96.8 15.8 67 149-230 48-118 (166)
104 cd04139 RalA_RalB RalA/RalB su 98.9 2.4E-08 5.1E-13 97.9 13.2 67 149-229 49-119 (164)
105 cd04109 Rab28 Rab28 subfamily. 98.9 1.6E-08 3.4E-13 105.2 12.3 24 49-72 2-25 (215)
106 cd04166 CysN_ATPS CysN_ATPS su 98.9 1.4E-08 3E-13 105.1 11.8 83 132-230 62-145 (208)
107 cd04138 H_N_K_Ras_like H-Ras/N 98.9 2.2E-08 4.7E-13 97.8 12.5 68 149-229 50-120 (162)
108 cd04175 Rap1 Rap1 subgroup. T 98.9 2.3E-08 4.9E-13 98.7 12.5 68 148-229 49-120 (164)
109 TIGR02528 EutP ethanolamine ut 98.9 2E-08 4.3E-13 96.7 11.6 24 49-72 2-25 (142)
110 cd04154 Arl2 Arl2 subfamily. 98.9 3.3E-08 7.1E-13 98.8 13.5 114 46-230 13-130 (173)
111 cd04118 Rab24 Rab24 subfamily. 98.8 4.7E-08 1E-12 99.4 14.7 24 49-72 2-25 (193)
112 cd04147 Ras_dva Ras-dva subfam 98.8 8.6E-08 1.9E-12 98.3 16.7 67 149-229 48-118 (198)
113 cd04160 Arfrp1 Arfrp1 subfamil 98.8 3.9E-08 8.4E-13 97.1 13.6 69 148-230 50-122 (167)
114 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.8 2.3E-08 5E-13 101.1 12.1 115 49-229 5-123 (183)
115 cd01863 Rab18 Rab18 subfamily. 98.8 5.3E-08 1.1E-12 95.6 14.2 68 148-229 49-120 (161)
116 cd04108 Rab36_Rab34 Rab34/Rab3 98.8 4.4E-08 9.5E-13 98.0 13.8 115 49-229 2-120 (170)
117 cd04107 Rab32_Rab38 Rab38/Rab3 98.8 2.8E-08 6.1E-13 102.0 12.7 68 148-229 50-124 (201)
118 cd01889 SelB_euk SelB subfamil 98.8 6.3E-08 1.4E-12 98.7 15.1 66 148-230 68-135 (192)
119 cd04111 Rab39 Rab39 subfamily. 98.8 7.9E-08 1.7E-12 99.8 16.0 25 48-72 3-27 (211)
120 cd04140 ARHI_like ARHI subfami 98.8 2.9E-08 6.2E-13 98.3 12.1 24 49-72 3-26 (165)
121 cd04156 ARLTS1 ARLTS1 subfamil 98.8 4.9E-08 1.1E-12 95.7 13.7 68 148-229 44-115 (160)
122 cd04116 Rab9 Rab9 subfamily. 98.8 8.5E-08 1.8E-12 95.2 15.5 27 47-73 5-31 (170)
123 cd01891 TypA_BipA TypA (tyrosi 98.8 2.3E-08 4.9E-13 102.1 11.6 68 148-230 65-132 (194)
124 cd04110 Rab35 Rab35 subfamily. 98.8 2.8E-08 6.1E-13 101.9 12.4 117 47-229 6-124 (199)
125 cd04114 Rab30 Rab30 subfamily. 98.8 5.2E-08 1.1E-12 96.4 13.7 117 46-229 6-126 (169)
126 cd04176 Rap2 Rap2 subgroup. T 98.8 2E-08 4.3E-13 98.9 10.5 24 49-72 3-26 (163)
127 cd04144 Ras2 Ras2 subfamily. 98.8 5.3E-08 1.1E-12 99.1 13.7 67 149-229 48-120 (190)
128 cd00876 Ras Ras family. The R 98.8 5.9E-08 1.3E-12 94.5 13.0 114 49-229 1-118 (160)
129 TIGR00491 aIF-2 translation in 98.8 3.9E-08 8.4E-13 116.1 13.7 134 45-229 2-135 (590)
130 cd00878 Arf_Arl Arf (ADP-ribos 98.8 7.5E-08 1.6E-12 94.3 13.6 69 148-230 43-115 (158)
131 cd04132 Rho4_like Rho4-like su 98.8 1.3E-07 2.8E-12 95.5 15.7 24 49-72 2-25 (187)
132 cd01886 EF-G Elongation factor 98.8 3.2E-08 6.8E-13 106.6 11.7 82 132-229 49-130 (270)
133 cd04115 Rab33B_Rab33A Rab33B/R 98.8 8.5E-08 1.8E-12 95.5 13.6 68 148-229 51-123 (170)
134 cd04161 Arl2l1_Arl13_like Arl2 98.8 6.6E-08 1.4E-12 96.3 12.2 69 148-230 43-115 (167)
135 smart00178 SAR Sar1p-like memb 98.8 6.9E-08 1.5E-12 97.8 12.4 113 46-229 16-132 (184)
136 PTZ00369 Ras-like protein; Pro 98.8 1.5E-07 3.1E-12 95.8 14.8 26 47-72 5-30 (189)
137 cd00879 Sar1 Sar1 subfamily. 98.8 1.5E-07 3.3E-12 95.3 14.7 35 36-72 10-44 (190)
138 cd04151 Arl1 Arl1 subfamily. 98.8 1.3E-07 2.8E-12 92.9 13.8 68 149-230 44-115 (158)
139 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.7 9.8E-08 2.1E-12 94.7 12.6 121 45-231 20-144 (221)
140 cd04177 RSR1 RSR1 subgroup. R 98.7 7.5E-08 1.6E-12 95.7 12.2 24 49-72 3-26 (168)
141 cd04169 RF3 RF3 subfamily. Pe 98.7 1.2E-07 2.6E-12 101.9 14.5 136 48-230 3-138 (267)
142 cd01896 DRG The developmentall 98.7 2.3E-07 5.1E-12 97.8 16.3 23 49-71 2-24 (233)
143 cd04168 TetM_like Tet(M)-like 98.7 6.3E-08 1.4E-12 102.3 11.8 67 148-229 64-130 (237)
144 PLN03108 Rab family protein; P 98.7 1.2E-07 2.5E-12 98.3 13.5 117 47-229 6-125 (210)
145 cd04149 Arf6 Arf6 subfamily. 98.7 2.2E-07 4.8E-12 92.7 14.9 67 149-229 54-124 (168)
146 cd04125 RabA_like RabA-like su 98.7 1.5E-07 3.1E-12 95.5 13.8 67 149-229 50-119 (188)
147 PLN03110 Rab GTPase; Provision 98.7 1.4E-07 3.1E-12 98.2 14.0 117 47-229 12-131 (216)
148 cd01884 EF_Tu EF-Tu subfamily. 98.7 7.3E-08 1.6E-12 98.8 11.5 68 147-229 64-132 (195)
149 PLN03118 Rab family protein; P 98.7 1.1E-07 2.4E-12 98.5 13.0 25 48-72 15-39 (211)
150 cd04162 Arl9_Arfrp2_like Arl9/ 98.7 8E-08 1.7E-12 95.4 11.2 69 148-230 44-114 (164)
151 cd01892 Miro2 Miro2 subfamily. 98.7 2.1E-07 4.6E-12 92.9 14.2 118 47-229 4-122 (169)
152 cd04137 RheB Rheb (Ras Homolog 98.7 2.4E-07 5.2E-12 93.0 14.6 24 49-72 3-26 (180)
153 cd01888 eIF2_gamma eIF2-gamma 98.7 2.4E-07 5.3E-12 95.5 15.0 22 49-70 2-23 (203)
154 smart00174 RHO Rho (Ras homolo 98.7 1.1E-07 2.4E-12 94.7 11.9 23 50-72 1-23 (174)
155 cd00877 Ran Ran (Ras-related n 98.7 1.1E-07 2.4E-12 94.6 11.7 24 49-72 2-25 (166)
156 cd04148 RGK RGK subfamily. Th 98.7 2.8E-07 6.1E-12 96.3 15.3 24 49-72 2-25 (221)
157 cd04146 RERG_RasL11_like RERG/ 98.7 6.4E-08 1.4E-12 95.7 9.9 24 49-72 1-24 (165)
158 cd04158 ARD1 ARD1 subfamily. 98.7 2.6E-07 5.6E-12 92.1 14.3 24 49-72 1-24 (169)
159 TIGR00475 selB selenocysteine- 98.7 1.8E-07 4E-12 111.0 15.4 69 148-231 50-119 (581)
160 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.7 1.8E-07 3.8E-12 93.8 13.0 67 149-229 51-121 (172)
161 cd04117 Rab15 Rab15 subfamily. 98.7 2.4E-07 5.3E-12 91.5 13.7 115 49-229 2-119 (161)
162 CHL00189 infB translation init 98.7 1.9E-07 4E-12 112.3 14.9 119 46-229 243-361 (742)
163 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.7 3E-07 6.6E-12 92.1 14.2 26 47-72 15-40 (174)
164 cd00882 Ras_like_GTPase Ras-li 98.7 1.9E-07 4.2E-12 88.4 12.2 70 148-231 45-118 (157)
165 cd04170 EF-G_bact Elongation f 98.7 8.4E-08 1.8E-12 103.3 10.4 68 148-230 64-131 (268)
166 cd00157 Rho Rho (Ras homology) 98.7 8.5E-08 1.9E-12 94.9 9.5 24 49-72 2-25 (171)
167 PLN00223 ADP-ribosylation fact 98.7 6.5E-07 1.4E-11 90.6 16.0 68 149-230 62-133 (181)
168 smart00177 ARF ARF-like small 98.7 1.6E-07 3.4E-12 94.4 11.3 68 148-229 57-128 (175)
169 PRK10512 selenocysteinyl-tRNA- 98.7 4.1E-07 8.8E-12 108.5 16.6 68 148-230 51-119 (614)
170 PF00735 Septin: Septin; Inte 98.7 7.7E-08 1.7E-12 104.0 9.5 138 49-231 6-158 (281)
171 cd01870 RhoA_like RhoA-like su 98.7 3.9E-07 8.5E-12 90.8 14.0 25 48-72 2-26 (175)
172 cd04150 Arf1_5_like Arf1-Arf5- 98.7 5.8E-07 1.3E-11 88.7 15.0 68 148-229 44-115 (159)
173 PTZ00133 ADP-ribosylation fact 98.6 5.6E-07 1.2E-11 91.1 15.2 67 149-229 62-132 (182)
174 TIGR00231 small_GTP small GTP- 98.6 3.3E-07 7.2E-12 87.9 12.6 29 48-77 2-30 (161)
175 PRK05306 infB translation init 98.6 2.3E-07 5E-12 112.4 13.8 116 45-229 288-403 (787)
176 PLN03071 GTP-binding nuclear p 98.6 2.1E-07 4.5E-12 97.2 11.6 67 148-229 62-131 (219)
177 cd04126 Rab20 Rab20 subfamily. 98.6 6.8E-07 1.5E-11 93.4 15.2 67 149-229 45-114 (220)
178 cd04143 Rhes_like Rhes_like su 98.6 4.5E-07 9.8E-12 96.4 14.0 24 49-72 2-25 (247)
179 cd04135 Tc10 TC10 subfamily. 98.6 4.8E-07 1E-11 90.0 13.2 24 49-72 2-25 (174)
180 cd01885 EF2 EF2 (for archaea a 98.6 3.2E-07 7E-12 95.9 12.2 66 148-228 73-138 (222)
181 cd04128 Spg1 Spg1p. Spg1p (se 98.6 1.3E-06 2.9E-11 88.4 16.0 67 148-229 49-118 (182)
182 TIGR01393 lepA GTP-binding pro 98.6 3.7E-07 8.1E-12 108.5 13.6 132 47-229 3-136 (595)
183 TIGR00437 feoB ferrous iron tr 98.6 2.5E-07 5.4E-12 109.9 12.1 71 149-229 42-113 (591)
184 cd04121 Rab40 Rab40 subfamily. 98.6 4.9E-07 1.1E-11 92.3 12.6 67 148-229 55-124 (189)
185 cd04167 Snu114p Snu114p subfam 98.6 3E-07 6.5E-12 95.5 11.0 66 148-228 71-136 (213)
186 TIGR00487 IF-2 translation ini 98.6 3.3E-07 7.1E-12 108.5 12.6 116 46-229 86-201 (587)
187 cd04102 RabL3 RabL3 (Rab-like3 98.6 1.5E-06 3.2E-11 89.6 15.4 25 49-73 2-26 (202)
188 cd04134 Rho3 Rho3 subfamily. 98.6 7.7E-07 1.7E-11 90.5 13.1 24 49-72 2-25 (189)
189 cd04155 Arl3 Arl3 subfamily. 98.5 8E-07 1.7E-11 88.3 12.8 27 46-72 13-39 (173)
190 KOG1489 Predicted GTP-binding 98.5 2.3E-07 5E-12 98.5 9.0 122 46-229 195-326 (366)
191 TIGR02836 spore_IV_A stage IV 98.5 6.9E-07 1.5E-11 98.9 12.9 166 30-229 5-194 (492)
192 COG0536 Obg Predicted GTPase [ 98.5 9.6E-07 2.1E-11 95.0 13.6 165 49-307 161-336 (369)
193 PRK12317 elongation factor 1-a 98.5 3.2E-07 7E-12 105.3 10.7 80 132-229 69-153 (425)
194 PRK04004 translation initiatio 98.5 5E-07 1.1E-11 107.2 12.4 135 44-229 3-137 (586)
195 TIGR00484 EF-G translation elo 98.5 5.3E-07 1.1E-11 109.6 12.7 134 46-230 9-142 (689)
196 cd04105 SR_beta Signal recogni 98.5 9.3E-07 2E-11 91.2 12.7 25 48-72 1-25 (203)
197 PLN03127 Elongation factor Tu; 98.5 4E-07 8.6E-12 104.7 10.9 131 46-229 60-191 (447)
198 PRK05433 GTP-binding protein L 98.5 1.4E-06 3E-11 103.8 15.7 133 46-229 6-140 (600)
199 cd01874 Cdc42 Cdc42 subfamily. 98.5 1.7E-06 3.7E-11 87.0 14.1 24 49-72 3-26 (175)
200 cd01899 Ygr210 Ygr210 subfamil 98.5 5.9E-06 1.3E-10 90.9 19.4 37 50-86 1-37 (318)
201 COG4917 EutP Ethanolamine util 98.5 4.4E-07 9.5E-12 83.9 8.6 103 48-229 2-104 (148)
202 CHL00071 tufA elongation facto 98.5 4.9E-07 1.1E-11 103.3 11.2 68 148-230 75-143 (409)
203 cd04130 Wrch_1 Wrch-1 subfamil 98.5 1.6E-06 3.4E-11 86.6 12.9 24 49-72 2-25 (173)
204 PRK00007 elongation factor G; 98.5 9.5E-07 2.1E-11 107.3 13.3 135 46-231 9-143 (693)
205 smart00176 RAN Ran (Ras-relate 98.5 1.1E-06 2.5E-11 90.4 11.6 67 148-229 44-113 (200)
206 PRK12739 elongation factor G; 98.5 6.7E-07 1.5E-11 108.6 11.3 134 46-230 7-140 (691)
207 cd01871 Rac1_like Rac1-like su 98.5 4.2E-06 9E-11 84.1 15.2 68 148-230 49-120 (174)
208 COG1100 GTPase SAR1 and relate 98.4 8.4E-06 1.8E-10 84.4 17.9 120 48-234 6-130 (219)
209 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.4 6.3E-06 1.4E-10 86.8 17.0 116 46-229 12-131 (232)
210 TIGR02034 CysN sulfate adenyly 98.4 9.8E-07 2.1E-11 100.6 11.3 82 132-230 65-148 (406)
211 KOG1547 Septin CDC10 and relat 98.4 3.4E-06 7.4E-11 86.2 13.4 80 148-229 104-198 (336)
212 cd01875 RhoG RhoG subfamily. 98.4 5.8E-06 1.3E-10 84.3 15.3 115 48-230 4-122 (191)
213 cd01883 EF1_alpha Eukaryotic e 98.4 5.7E-07 1.2E-11 93.9 8.0 82 132-229 62-151 (219)
214 TIGR01394 TypA_BipA GTP-bindin 98.4 1.9E-06 4.1E-11 102.4 13.3 128 48-229 2-130 (594)
215 PRK05506 bifunctional sulfate 98.4 2.4E-06 5.2E-11 102.9 13.9 67 147-229 103-171 (632)
216 PRK05124 cysN sulfate adenylyl 98.4 2.2E-06 4.7E-11 99.5 12.7 148 44-230 24-175 (474)
217 PF00071 Ras: Ras family; Int 98.4 1.7E-06 3.6E-11 85.0 9.9 115 49-229 1-118 (162)
218 PRK00741 prfC peptide chain re 98.4 3.3E-06 7.2E-11 99.0 14.0 138 46-230 9-146 (526)
219 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.4 3.1E-06 6.8E-11 88.5 12.3 114 49-230 3-120 (222)
220 PRK12736 elongation factor Tu; 98.4 2.1E-06 4.5E-11 97.6 11.6 129 48-229 13-142 (394)
221 KOG0093 GTPase Rab3, small G p 98.4 6.4E-06 1.4E-10 78.2 12.6 165 49-310 23-189 (193)
222 PRK00049 elongation factor Tu; 98.3 1.6E-06 3.6E-11 98.5 10.3 68 147-229 74-142 (396)
223 cd04131 Rnd Rnd subfamily. Th 98.3 2.9E-06 6.2E-11 85.7 10.9 113 49-229 3-119 (178)
224 PLN03126 Elongation factor Tu; 98.3 3.4E-06 7.3E-11 97.7 12.6 131 47-230 81-212 (478)
225 PRK12735 elongation factor Tu; 98.3 2.5E-06 5.3E-11 97.1 11.3 68 147-229 74-142 (396)
226 cd01882 BMS1 Bms1. Bms1 is an 98.3 3.3E-06 7E-11 88.7 11.3 67 146-230 81-148 (225)
227 PF08477 Miro: Miro-like prote 98.3 4E-07 8.7E-12 84.8 3.9 24 49-72 1-24 (119)
228 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.3 3.9E-06 8.4E-11 85.1 11.4 114 48-229 6-123 (182)
229 cd04133 Rop_like Rop subfamily 98.3 2.6E-06 5.6E-11 85.9 10.0 114 49-230 3-120 (176)
230 TIGR00485 EF-Tu translation el 98.3 1.9E-06 4.1E-11 98.0 10.0 130 48-230 13-143 (394)
231 cd01900 YchF YchF subfamily. 98.3 1.4E-06 3.1E-11 93.6 8.5 37 50-86 1-37 (274)
232 KOG2655 Septin family protein 98.3 2.9E-06 6.2E-11 93.1 10.8 83 148-232 79-175 (366)
233 PRK10218 GTP-binding protein; 98.3 3.9E-06 8.4E-11 99.7 12.6 130 46-229 4-134 (607)
234 COG5019 CDC3 Septin family pro 98.3 4.5E-06 9.9E-11 90.9 12.0 82 148-231 82-178 (373)
235 TIGR03680 eif2g_arch translati 98.3 8.3E-06 1.8E-10 93.1 14.8 67 148-230 80-149 (406)
236 TIGR00503 prfC peptide chain r 98.3 5.1E-06 1.1E-10 97.5 13.2 137 46-229 10-146 (527)
237 PTZ00258 GTP-binding protein; 98.3 2.9E-06 6.2E-11 95.3 10.6 42 46-87 20-61 (390)
238 KOG2486 Predicted GTPase [Gene 98.3 2.1E-06 4.6E-11 89.8 8.8 79 149-231 184-264 (320)
239 PLN00023 GTP-binding protein; 98.3 3.9E-06 8.4E-11 91.6 10.6 29 44-72 18-46 (334)
240 TIGR00483 EF-1_alpha translati 98.3 4.9E-06 1.1E-10 95.6 11.8 81 132-229 70-155 (426)
241 PRK09601 GTP-binding protein Y 98.3 4.2E-06 9.1E-11 93.0 10.6 38 48-85 3-40 (364)
242 PRK13351 elongation factor G; 98.2 6.7E-06 1.4E-10 100.1 13.1 68 148-230 73-140 (687)
243 PTZ00416 elongation factor 2; 98.2 5.7E-06 1.2E-10 102.3 12.3 66 148-228 92-157 (836)
244 PRK07560 elongation factor EF- 98.2 5.1E-06 1.1E-10 101.6 11.8 133 46-228 19-152 (731)
245 cd01858 NGP_1 NGP-1. Autoanti 98.2 4.4E-06 9.5E-11 82.4 9.0 50 23-75 81-130 (157)
246 cd04129 Rho2 Rho2 subfamily. 98.2 2.1E-05 4.5E-10 79.8 13.9 24 49-72 3-26 (187)
247 KOG0078 GTP-binding protein SE 98.2 1.4E-05 3E-10 80.9 12.2 122 44-231 9-133 (207)
248 TIGR00490 aEF-2 translation el 98.2 7.4E-06 1.6E-10 100.0 12.2 68 147-229 85-152 (720)
249 PF00025 Arf: ADP-ribosylation 98.2 7.5E-06 1.6E-10 82.4 10.1 114 46-230 13-130 (175)
250 PLN00116 translation elongatio 98.2 8.9E-06 1.9E-10 100.8 12.1 66 148-228 98-163 (843)
251 PRK04000 translation initiatio 98.2 2E-05 4.4E-10 90.1 13.8 23 48-70 10-32 (411)
252 KOG0084 GTPase Rab1/YPT1, smal 98.1 1E-05 2.2E-10 80.9 9.3 119 46-230 8-129 (205)
253 COG2229 Predicted GTPase [Gene 98.1 5.3E-05 1.1E-09 75.2 14.2 136 45-238 8-146 (187)
254 KOG1490 GTP-binding protein CR 98.1 6.7E-06 1.5E-10 92.0 8.3 78 149-231 216-297 (620)
255 PTZ00132 GTP-binding nuclear p 98.1 0.00015 3.2E-09 75.2 18.0 28 45-72 7-34 (215)
256 cd04103 Centaurin_gamma Centau 98.1 5E-05 1.1E-09 75.0 13.7 24 49-72 2-25 (158)
257 cd04178 Nucleostemin_like Nucl 98.1 1.1E-05 2.4E-10 81.1 9.0 31 47-77 117-147 (172)
258 cd01855 YqeH YqeH. YqeH is an 98.1 8E-06 1.7E-10 83.1 8.2 43 22-72 110-152 (190)
259 cd01849 YlqF_related_GTPase Yl 98.1 6.2E-06 1.4E-10 81.2 7.1 40 45-84 98-138 (155)
260 COG1163 DRG Predicted GTPase [ 98.1 4.3E-06 9.3E-11 89.4 6.0 25 48-72 64-88 (365)
261 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 9.3E-06 2E-10 78.7 6.9 25 49-73 85-109 (141)
262 cd01873 RhoBTB RhoBTB subfamil 98.0 2.2E-05 4.8E-10 80.5 10.0 65 148-229 66-134 (195)
263 PRK09602 translation-associate 98.0 2.6E-05 5.6E-10 88.4 10.7 39 48-86 2-40 (396)
264 KOG0095 GTPase Rab30, small G 98.0 0.0002 4.3E-09 68.2 14.2 121 46-231 6-128 (213)
265 PTZ00327 eukaryotic translatio 98.0 9.6E-05 2.1E-09 85.3 14.4 66 149-230 118-186 (460)
266 PRK12740 elongation factor G; 98.0 3.7E-05 7.9E-10 93.5 11.6 68 148-230 60-127 (668)
267 KOG0092 GTPase Rab5/YPT51 and 98.0 1.4E-05 3E-10 79.6 6.3 116 49-230 7-125 (200)
268 PF09439 SRPRB: Signal recogni 97.9 1.9E-05 4.2E-10 79.5 7.4 26 47-72 3-28 (181)
269 cd01851 GBP Guanylate-binding 97.9 3.8E-05 8.3E-10 80.5 9.7 38 46-83 6-46 (224)
270 KOG0075 GTP-binding ADP-ribosy 97.9 2.5E-05 5.5E-10 74.2 6.7 70 148-230 65-137 (186)
271 TIGR01425 SRP54_euk signal rec 97.9 0.00021 4.6E-09 81.2 14.9 78 148-236 183-260 (429)
272 KOG0410 Predicted GTP binding 97.9 0.00014 3.1E-09 77.7 12.4 128 43-229 174-308 (410)
273 PLN00043 elongation factor 1-a 97.8 6.6E-05 1.4E-09 86.6 10.0 69 147-229 84-159 (447)
274 PTZ00141 elongation factor 1- 97.8 5.9E-05 1.3E-09 87.0 9.4 22 49-70 9-30 (446)
275 PRK11889 flhF flagellar biosyn 97.8 0.00012 2.6E-09 81.7 11.3 100 149-261 322-421 (436)
276 TIGR03596 GTPase_YlqF ribosome 97.8 4.4E-05 9.6E-10 82.6 7.3 29 47-75 118-146 (276)
277 PRK09563 rbgA GTPase YlqF; Rev 97.8 4.8E-05 1E-09 82.8 7.5 29 47-75 121-149 (287)
278 PRK09435 membrane ATPase/prote 97.8 0.00019 4.2E-09 79.3 12.1 24 47-70 56-79 (332)
279 KOG0080 GTPase Rab18, small G 97.8 6.5E-05 1.4E-09 72.5 7.2 117 45-228 9-130 (209)
280 KOG1145 Mitochondrial translat 97.8 0.00029 6.4E-09 80.0 13.4 113 46-228 152-266 (683)
281 cd01856 YlqF YlqF. Proteins o 97.7 0.00015 3.2E-09 72.7 9.7 28 46-73 114-141 (171)
282 PRK12288 GTPase RsgA; Reviewed 97.7 6.6E-05 1.4E-09 83.7 7.8 25 49-73 207-231 (347)
283 PF03193 DUF258: Protein of un 97.7 3.6E-05 7.8E-10 76.1 4.9 25 48-72 36-60 (161)
284 PRK13768 GTPase; Provisional 97.7 8.1E-05 1.8E-09 79.5 7.8 76 149-232 98-179 (253)
285 PRK12289 GTPase RsgA; Reviewed 97.7 7.5E-05 1.6E-09 83.3 7.7 25 49-73 174-198 (352)
286 PRK14723 flhF flagellar biosyn 97.7 0.00042 9.2E-09 83.6 14.2 171 49-261 187-367 (767)
287 TIGR00157 ribosome small subun 97.7 0.00012 2.6E-09 77.9 8.4 25 48-72 121-145 (245)
288 KOG0091 GTPase Rab39, small G 97.7 0.00067 1.5E-08 65.8 12.5 69 148-230 58-131 (213)
289 TIGR00750 lao LAO/AO transport 97.7 0.00084 1.8E-08 73.6 15.2 25 46-70 33-57 (300)
290 PRK14722 flhF flagellar biosyn 97.7 0.00011 2.5E-09 82.2 8.2 101 149-261 217-325 (374)
291 TIGR03597 GTPase_YqeH ribosome 97.6 0.0001 2.3E-09 82.7 7.9 24 48-71 155-178 (360)
292 PRK14721 flhF flagellar biosyn 97.6 0.0004 8.7E-09 79.0 12.5 100 149-261 271-370 (420)
293 COG0480 FusA Translation elong 97.6 0.00033 7.1E-09 84.3 12.0 135 46-230 9-143 (697)
294 COG1161 Predicted GTPases [Gen 97.6 0.00017 3.7E-09 79.7 8.6 25 48-72 133-157 (322)
295 COG0532 InfB Translation initi 97.6 0.00037 8.1E-09 79.6 11.4 116 45-230 3-122 (509)
296 KOG0079 GTP-binding protein H- 97.6 0.0014 3E-08 62.7 13.2 70 148-231 57-128 (198)
297 KOG4252 GTP-binding protein [S 97.6 0.00035 7.5E-09 68.6 9.4 66 150-230 71-139 (246)
298 PRK06731 flhF flagellar biosyn 97.6 0.00042 9E-09 74.6 11.0 101 148-261 155-255 (270)
299 KOG1532 GTPase XAB1, interacts 97.6 0.0019 4.2E-08 67.9 15.3 222 46-316 18-276 (366)
300 COG5256 TEF1 Translation elong 97.6 0.00064 1.4E-08 75.4 12.3 82 132-230 70-160 (428)
301 PRK12727 flagellar biosynthesi 97.5 0.00089 1.9E-08 77.5 13.7 100 148-261 429-528 (559)
302 PRK12726 flagellar biosynthesi 97.5 0.00066 1.4E-08 75.7 12.1 172 48-260 207-385 (407)
303 PRK10416 signal recognition pa 97.5 0.0011 2.4E-08 73.1 13.6 95 148-252 197-294 (318)
304 PRK13796 GTPase YqeH; Provisio 97.5 0.0001 2.2E-09 82.9 5.2 24 48-71 161-184 (365)
305 KOG0090 Signal recognition par 97.5 0.0005 1.1E-08 69.8 9.2 69 149-230 83-160 (238)
306 PRK05703 flhF flagellar biosyn 97.5 0.0015 3.3E-08 74.8 14.5 102 148-261 300-401 (424)
307 cd01859 MJ1464 MJ1464. This f 97.5 0.00063 1.4E-08 66.8 9.8 45 23-72 82-126 (156)
308 KOG0394 Ras-related GTPase [Ge 97.5 0.00027 5.8E-09 70.1 6.9 120 45-229 7-132 (210)
309 KOG0073 GTP-binding ADP-ribosy 97.5 0.00083 1.8E-08 65.5 10.0 111 47-228 16-130 (185)
310 PRK12724 flagellar biosynthesi 97.4 0.0011 2.4E-08 75.0 12.2 103 148-261 300-403 (432)
311 KOG0098 GTPase Rab2, small G p 97.4 0.0013 2.9E-08 65.3 11.1 121 46-231 5-127 (216)
312 PRK14974 cell division protein 97.4 0.00063 1.4E-08 75.4 9.5 91 148-251 223-313 (336)
313 PRK00098 GTPase RsgA; Reviewed 97.4 0.00058 1.3E-08 74.8 9.2 24 48-71 165-188 (298)
314 PRK12723 flagellar biosynthesi 97.4 0.0011 2.4E-08 74.9 11.3 102 148-261 255-356 (388)
315 KOG0087 GTPase Rab11/YPT3, sma 97.3 0.00085 1.8E-08 68.1 8.7 118 46-229 13-133 (222)
316 COG1162 Predicted GTPases [Gen 97.3 0.00048 1E-08 74.3 7.4 23 48-70 165-187 (301)
317 KOG1707 Predicted Ras related/ 97.3 0.00086 1.9E-08 77.0 9.6 119 47-233 9-133 (625)
318 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00063 1.4E-08 74.1 8.1 25 48-72 162-186 (287)
319 cd03112 CobW_like The function 97.3 0.00022 4.8E-09 70.6 4.2 23 48-70 1-23 (158)
320 PRK10867 signal recognition pa 97.3 0.0019 4.2E-08 73.9 12.1 79 148-237 184-262 (433)
321 COG0012 Predicted GTPase, prob 97.3 0.0005 1.1E-08 75.7 7.1 37 48-84 3-39 (372)
322 TIGR00064 ftsY signal recognit 97.2 0.0031 6.8E-08 68.1 12.8 95 148-252 155-252 (272)
323 cd03114 ArgK-like The function 97.2 0.0025 5.5E-08 62.4 11.1 21 50-70 2-22 (148)
324 KOG1486 GTP-binding protein DR 97.2 0.00022 4.8E-09 73.7 3.5 24 48-71 63-86 (364)
325 TIGR00092 GTP-binding protein 97.2 0.00076 1.6E-08 75.3 7.5 37 48-84 3-40 (368)
326 COG3276 SelB Selenocysteine-sp 97.2 0.0033 7.2E-08 70.4 12.3 68 149-231 51-119 (447)
327 KOG0395 Ras-related GTPase [Ge 97.2 0.0015 3.3E-08 67.1 9.1 117 47-230 3-123 (196)
328 PRK00771 signal recognition pa 97.2 0.0016 3.5E-08 74.6 10.2 92 149-253 177-268 (437)
329 PF00448 SRP54: SRP54-type pro 97.2 0.00092 2E-08 68.7 7.3 97 149-260 85-182 (196)
330 PRK06995 flhF flagellar biosyn 97.1 0.0032 6.9E-08 72.9 12.0 100 149-261 336-435 (484)
331 KOG0462 Elongation factor-type 97.1 0.0032 6.9E-08 71.9 11.5 131 47-230 60-192 (650)
332 KOG0086 GTPase Rab4, small G p 97.1 0.0031 6.8E-08 60.5 9.4 70 148-230 58-129 (214)
333 PF04670 Gtr1_RagA: Gtr1/RagA 97.0 0.0021 4.5E-08 67.7 8.6 119 49-231 1-127 (232)
334 cd03115 SRP The signal recogni 97.0 0.0081 1.7E-07 60.1 12.0 77 148-235 83-159 (173)
335 KOG0088 GTPase Rab21, small G 97.0 0.0096 2.1E-07 57.6 11.5 113 148-307 62-178 (218)
336 KOG3859 Septins (P-loop GTPase 96.9 0.0019 4.1E-08 67.8 7.0 133 49-231 44-192 (406)
337 KOG0461 Selenocysteine-specifi 96.9 0.014 3.1E-07 63.1 13.7 68 148-234 70-141 (522)
338 COG1217 TypA Predicted membran 96.9 0.0026 5.7E-08 71.2 8.2 69 148-231 68-136 (603)
339 PF03029 ATP_bind_1: Conserved 96.9 0.0018 4E-08 68.5 6.8 36 52-93 1-36 (238)
340 COG1419 FlhF Flagellar GTP-bin 96.8 0.0085 1.8E-07 67.1 11.7 174 47-261 203-382 (407)
341 KOG1144 Translation initiation 96.8 0.0064 1.4E-07 71.3 10.5 135 43-228 471-605 (1064)
342 KOG1424 Predicted GTP-binding 96.8 0.0014 3.1E-08 74.2 5.0 27 46-72 313-339 (562)
343 KOG1491 Predicted GTP-binding 96.8 0.0028 6.1E-08 68.6 6.9 105 46-197 19-126 (391)
344 TIGR00959 ffh signal recogniti 96.8 0.011 2.4E-07 67.7 12.2 93 148-253 183-275 (428)
345 PRK14845 translation initiatio 96.7 0.006 1.3E-07 76.5 10.5 68 147-229 525-592 (1049)
346 TIGR00073 hypB hydrogenase acc 96.7 0.016 3.5E-07 59.9 11.8 25 46-70 21-45 (207)
347 PF03308 ArgK: ArgK protein; 96.7 0.0068 1.5E-07 64.1 8.9 25 46-70 28-52 (266)
348 PF05879 RHD3: Root hair defec 96.7 0.17 3.6E-06 62.3 22.1 24 53-77 1-24 (742)
349 TIGR03348 VI_IcmF type VI secr 96.6 0.012 2.6E-07 75.9 12.5 31 44-76 108-138 (1169)
350 KOG0468 U5 snRNP-specific prot 96.6 0.0072 1.6E-07 70.1 9.2 133 46-228 127-262 (971)
351 COG1703 ArgK Putative periplas 96.6 0.13 2.9E-06 55.4 17.7 24 46-69 50-73 (323)
352 COG5192 BMS1 GTP-binding prote 96.5 0.011 2.4E-07 67.2 9.7 45 187-232 135-180 (1077)
353 COG0481 LepA Membrane GTPase L 96.5 0.012 2.6E-07 66.3 9.8 132 48-230 10-143 (603)
354 PTZ00099 rab6; Provisional 96.5 0.016 3.4E-07 58.5 9.7 68 148-229 29-99 (176)
355 COG0541 Ffh Signal recognition 96.4 0.029 6.2E-07 63.2 12.2 77 148-235 183-259 (451)
356 COG0050 TufB GTPases - transla 96.4 0.017 3.7E-07 61.5 9.7 130 48-230 13-143 (394)
357 KOG0097 GTPase Rab14, small G 96.4 0.018 3.9E-07 54.5 8.9 117 48-230 12-131 (215)
358 KOG2485 Conserved ATP/GTP bind 96.4 0.011 2.3E-07 63.8 8.0 25 46-70 142-166 (335)
359 KOG0070 GTP-binding ADP-ribosy 96.3 0.0045 9.7E-08 61.8 4.3 114 46-230 16-133 (181)
360 KOG3883 Ras family small GTPas 96.1 0.06 1.3E-06 52.1 11.0 70 149-232 61-135 (198)
361 PRK10463 hydrogenase nickel in 96.1 0.068 1.5E-06 58.0 12.4 26 45-70 102-127 (290)
362 KOG2484 GTPase [General functi 96.0 0.0059 1.3E-07 67.5 4.2 47 31-77 235-282 (435)
363 KOG0464 Elongation factor G [T 95.8 0.019 4.2E-07 63.2 6.9 133 47-230 37-169 (753)
364 KOG1143 Predicted translation 95.8 0.012 2.6E-07 64.2 5.1 68 149-231 250-319 (591)
365 KOG0458 Elongation factor 1 al 95.7 0.055 1.2E-06 62.6 10.5 87 131-234 239-334 (603)
366 KOG1487 GTP-binding protein DR 95.6 0.01 2.2E-07 62.0 3.6 29 48-77 60-88 (358)
367 PF09547 Spore_IV_A: Stage IV 95.6 0.58 1.3E-05 52.9 17.2 167 30-229 5-194 (492)
368 PRK01889 GTPase RsgA; Reviewed 95.5 0.024 5.3E-07 63.7 6.7 24 48-71 196-219 (356)
369 COG5257 GCD11 Translation init 95.5 0.11 2.4E-06 56.1 11.2 42 49-92 12-53 (415)
370 cd01859 MJ1464 MJ1464. This f 95.5 0.058 1.3E-06 52.8 8.5 54 174-229 2-55 (156)
371 KOG0081 GTPase Rab27, small G 95.5 0.018 3.8E-07 55.9 4.4 64 149-230 68-139 (219)
372 KOG0780 Signal recognition par 95.4 0.037 8E-07 61.1 7.4 74 148-234 184-259 (483)
373 COG2895 CysN GTPases - Sulfate 95.2 0.1 2.3E-06 57.1 9.9 152 45-233 4-157 (431)
374 COG4108 PrfC Peptide chain rel 95.2 0.14 3E-06 57.6 10.8 135 48-231 13-149 (528)
375 KOG2203 GTP-binding protein [G 95.1 0.027 5.9E-07 64.3 5.1 36 37-72 26-62 (772)
376 KOG2423 Nucleolar GTPase [Gene 95.1 0.033 7.2E-07 61.4 5.5 24 49-72 309-332 (572)
377 KOG0076 GTP-binding ADP-ribosy 95.0 0.046 1E-06 54.1 5.8 68 149-230 70-141 (197)
378 KOG4181 Uncharacterized conser 95.0 0.11 2.4E-06 56.6 9.0 28 44-71 185-212 (491)
379 KOG0393 Ras-related small GTPa 94.3 0.031 6.8E-07 57.0 3.0 27 49-76 6-32 (198)
380 PRK11537 putative GTP-binding 94.2 0.19 4E-06 55.7 9.1 25 46-70 3-27 (318)
381 COG3840 ThiQ ABC-type thiamine 94.2 0.042 9E-07 55.1 3.4 28 49-77 27-54 (231)
382 COG5258 GTPBP1 GTPase [General 94.1 0.063 1.4E-06 59.2 5.0 66 150-230 203-270 (527)
383 TIGR02868 CydC thiol reductant 94.0 0.17 3.6E-06 60.1 8.9 28 49-78 363-390 (529)
384 COG1136 SalX ABC-type antimicr 93.9 0.049 1.1E-06 56.9 3.6 56 172-228 148-205 (226)
385 PF13555 AAA_29: P-loop contai 93.9 0.058 1.3E-06 44.7 3.3 22 49-70 25-46 (62)
386 COG0552 FtsY Signal recognitio 93.8 0.42 9.2E-06 52.5 10.5 78 148-233 222-302 (340)
387 KOG0463 GTP-binding protein GP 93.8 0.073 1.6E-06 58.3 4.6 76 140-230 211-288 (641)
388 KOG0074 GTP-binding ADP-ribosy 93.7 0.24 5.1E-06 47.5 7.4 125 34-229 5-133 (185)
389 COG1101 PhnK ABC-type uncharac 93.6 0.054 1.2E-06 55.7 3.1 28 49-77 34-61 (263)
390 KOG0467 Translation elongation 93.5 0.15 3.3E-06 60.6 7.0 64 149-227 73-136 (887)
391 PRK13695 putative NTPase; Prov 93.5 0.86 1.9E-05 45.5 11.6 22 49-70 2-23 (174)
392 COG4619 ABC-type uncharacteriz 93.4 0.46 1E-05 47.3 9.0 24 48-71 30-53 (223)
393 PF00005 ABC_tran: ABC transpo 93.4 0.064 1.4E-06 51.1 3.1 23 49-71 13-35 (137)
394 COG0523 Putative GTPases (G3E 93.3 0.4 8.6E-06 53.1 9.6 25 47-71 1-25 (323)
395 cd01849 YlqF_related_GTPase Yl 93.3 0.38 8.3E-06 47.1 8.6 43 187-230 1-44 (155)
396 KOG0077 Vesicle coat complex C 93.2 0.53 1.2E-05 46.5 9.0 126 32-230 7-136 (193)
397 cd00071 GMPK Guanosine monopho 93.2 0.08 1.7E-06 51.1 3.5 21 50-70 2-22 (137)
398 TIGR03499 FlhF flagellar biosy 93.1 0.14 3E-06 55.7 5.6 22 49-70 196-217 (282)
399 COG1341 Predicted GTPase or GT 93.1 0.21 4.5E-06 56.1 6.9 26 45-70 71-96 (398)
400 cd01858 NGP_1 NGP-1. Autoanti 92.9 0.29 6.3E-06 48.0 7.1 49 180-230 4-54 (157)
401 cd01855 YqeH YqeH. YqeH is an 92.9 0.42 9.1E-06 48.5 8.5 54 173-230 23-76 (190)
402 KOG0071 GTP-binding ADP-ribosy 92.8 2.3 5E-05 41.0 12.3 68 149-230 62-133 (180)
403 COG1116 TauB ABC-type nitrate/ 92.7 0.085 1.8E-06 55.6 3.0 23 49-71 31-53 (248)
404 TIGR02475 CobW cobalamin biosy 92.6 0.49 1.1E-05 52.9 9.1 25 46-70 3-27 (341)
405 cd01856 YlqF YlqF. Proteins o 92.5 0.46 1E-05 47.4 8.1 53 173-229 8-60 (171)
406 PF03205 MobB: Molybdopterin g 92.5 0.11 2.3E-06 50.5 3.3 23 48-70 1-23 (140)
407 KOG2749 mRNA cleavage and poly 92.5 1.1 2.3E-05 49.5 11.1 39 32-70 85-126 (415)
408 cd01130 VirB11-like_ATPase Typ 92.4 0.11 2.3E-06 52.8 3.3 22 49-70 27-48 (186)
409 PF13521 AAA_28: AAA domain; P 92.4 0.077 1.7E-06 52.4 2.2 22 49-70 1-22 (163)
410 COG4107 PhnK ABC-type phosphon 92.3 0.12 2.7E-06 51.3 3.4 30 49-80 34-63 (258)
411 TIGR03263 guanyl_kin guanylate 92.3 0.13 2.8E-06 51.5 3.8 22 49-70 3-24 (180)
412 TIGR03796 NHPM_micro_ABC1 NHPM 92.2 0.63 1.4E-05 57.3 10.3 22 49-70 507-528 (710)
413 PRK11174 cysteine/glutathione 92.2 0.51 1.1E-05 56.7 9.3 26 48-75 377-402 (588)
414 COG3640 CooC CO dehydrogenase 92.0 0.37 8.1E-06 50.3 6.6 44 182-228 153-198 (255)
415 PRK00300 gmk guanylate kinase; 91.9 0.13 2.9E-06 52.7 3.4 36 49-84 7-43 (205)
416 COG3910 Predicted ATPase [Gene 91.9 0.21 4.7E-06 50.4 4.6 46 26-78 23-69 (233)
417 KOG0460 Mitochondrial translat 91.9 0.46 1E-05 51.9 7.4 133 46-231 51-186 (449)
418 cd03225 ABC_cobalt_CbiO_domain 91.8 0.15 3.2E-06 52.6 3.6 28 49-78 29-56 (211)
419 TIGR03596 GTPase_YlqF ribosome 91.6 0.76 1.7E-05 49.8 9.1 52 175-230 12-63 (276)
420 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.6 0.16 3.4E-06 49.4 3.4 23 49-71 28-50 (144)
421 cd03264 ABC_drug_resistance_li 91.6 0.16 3.4E-06 52.5 3.6 28 49-78 27-54 (211)
422 TIGR01166 cbiO cobalt transpor 91.5 0.16 3.6E-06 51.4 3.5 23 49-71 20-42 (190)
423 cd01857 HSR1_MMR1 HSR1/MMR1. 91.4 0.24 5.3E-06 47.7 4.4 52 177-230 4-57 (141)
424 cd03261 ABC_Org_Solvent_Resist 91.4 0.18 3.9E-06 53.0 3.7 22 49-70 28-49 (235)
425 PF02263 GBP: Guanylate-bindin 91.4 0.56 1.2E-05 50.4 7.6 24 47-70 21-44 (260)
426 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.3 0.17 3.8E-06 52.4 3.5 28 49-78 32-59 (218)
427 cd03224 ABC_TM1139_LivF_branch 91.3 0.18 3.8E-06 52.4 3.6 23 49-71 28-50 (222)
428 COG0194 Gmk Guanylate kinase [ 91.2 0.14 2.9E-06 51.8 2.4 36 49-84 6-41 (191)
429 TIGR02673 FtsE cell division A 91.2 0.19 4.1E-06 52.0 3.6 23 49-71 30-52 (214)
430 PRK13541 cytochrome c biogenes 91.1 0.2 4.4E-06 51.1 3.8 23 49-71 28-50 (195)
431 cd03215 ABC_Carb_Monos_II This 91.1 0.21 4.6E-06 50.4 3.8 23 49-71 28-50 (182)
432 cd03263 ABC_subfamily_A The AB 91.1 0.19 4.2E-06 52.1 3.6 23 49-71 30-52 (220)
433 cd03258 ABC_MetN_methionine_tr 91.1 0.21 4.5E-06 52.4 3.9 28 49-78 33-60 (233)
434 cd03280 ABC_MutS2 MutS2 homolo 91.0 2.8 6.1E-05 43.0 12.1 20 49-68 30-49 (200)
435 cd03226 ABC_cobalt_CbiO_domain 91.0 0.21 4.5E-06 51.3 3.7 28 49-78 28-55 (205)
436 cd03218 ABC_YhbG The ABC trans 91.0 0.21 4.6E-06 52.2 3.9 23 49-71 28-50 (232)
437 PRK13540 cytochrome c biogenes 90.9 0.22 4.8E-06 51.0 3.8 24 48-71 28-51 (200)
438 cd03265 ABC_DrrA DrrA is the A 90.9 0.2 4.4E-06 52.1 3.5 22 49-70 28-49 (220)
439 TIGR00960 3a0501s02 Type II (G 90.9 0.2 4.3E-06 51.9 3.5 23 49-71 31-53 (216)
440 COG4988 CydD ABC-type transpor 90.9 0.2 4.4E-06 58.4 3.8 29 48-78 348-376 (559)
441 cd03222 ABC_RNaseL_inhibitor T 90.9 0.17 3.6E-06 51.2 2.8 23 49-71 27-49 (177)
442 PRK09563 rbgA GTPase YlqF; Rev 90.9 1.1 2.3E-05 49.0 9.2 52 175-230 15-66 (287)
443 PRK13851 type IV secretion sys 90.8 0.2 4.4E-06 55.9 3.7 32 48-81 163-194 (344)
444 cd03293 ABC_NrtD_SsuB_transpor 90.8 0.21 4.5E-06 52.0 3.5 23 49-71 32-54 (220)
445 COG0410 LivF ABC-type branched 90.8 0.21 4.6E-06 52.0 3.5 22 49-70 31-52 (237)
446 cd03259 ABC_Carb_Solutes_like 90.8 0.22 4.9E-06 51.4 3.7 22 49-70 28-49 (213)
447 cd03269 ABC_putative_ATPase Th 90.8 0.21 4.6E-06 51.4 3.6 22 49-70 28-49 (210)
448 cd00267 ABC_ATPase ABC (ATP-bi 90.7 0.24 5.3E-06 48.6 3.8 30 48-79 26-55 (157)
449 cd03369 ABCC_NFT1 Domain 2 of 90.7 0.22 4.7E-06 51.3 3.5 29 49-79 36-64 (207)
450 cd03266 ABC_NatA_sodium_export 90.7 0.22 4.7E-06 51.7 3.6 23 49-71 33-55 (218)
451 PRK14737 gmk guanylate kinase; 90.7 0.25 5.4E-06 50.3 3.9 22 49-70 6-27 (186)
452 PRK15177 Vi polysaccharide exp 90.7 0.23 4.9E-06 51.6 3.7 30 49-80 15-44 (213)
453 cd03232 ABC_PDR_domain2 The pl 90.7 0.23 5E-06 50.6 3.7 30 49-78 35-64 (192)
454 PRK11629 lolD lipoprotein tran 90.7 0.21 4.5E-06 52.5 3.5 22 49-70 37-58 (233)
455 TIGR01978 sufC FeS assembly AT 90.7 0.25 5.3E-06 52.1 4.0 22 49-70 28-49 (243)
456 cd03217 ABC_FeS_Assembly ABC-t 90.6 0.25 5.5E-06 50.7 3.9 23 49-71 28-50 (200)
457 TIGR02315 ABC_phnC phosphonate 90.6 0.22 4.7E-06 52.6 3.5 23 49-71 30-52 (243)
458 cd03216 ABC_Carb_Monos_I This 90.6 0.24 5.2E-06 49.1 3.6 23 49-71 28-50 (163)
459 TIGR01360 aden_kin_iso1 adenyl 90.6 0.2 4.4E-06 50.3 3.1 23 46-68 2-24 (188)
460 cd03219 ABC_Mj1267_LivG_branch 90.5 0.23 5E-06 52.1 3.7 28 49-78 28-55 (236)
461 PRK13539 cytochrome c biogenes 90.5 0.26 5.6E-06 50.8 3.9 28 49-78 30-57 (207)
462 cd03231 ABC_CcmA_heme_exporter 90.5 0.26 5.7E-06 50.6 3.9 28 49-78 28-55 (201)
463 PRK11124 artP arginine transpo 90.5 0.23 5E-06 52.4 3.5 28 49-78 30-57 (242)
464 cd03262 ABC_HisP_GlnQ_permease 90.5 0.24 5.3E-06 51.0 3.7 28 49-78 28-55 (213)
465 cd03254 ABCC_Glucan_exporter_l 90.4 0.26 5.6E-06 51.5 3.9 28 49-78 31-58 (229)
466 PRK13543 cytochrome c biogenes 90.4 0.26 5.5E-06 51.2 3.8 28 49-78 39-66 (214)
467 cd03245 ABCC_bacteriocin_expor 90.4 0.24 5.3E-06 51.3 3.6 29 49-79 32-60 (220)
468 cd03249 ABC_MTABC3_MDL1_MDL2 M 90.4 0.26 5.6E-06 51.9 3.8 28 49-78 31-58 (238)
469 cd03238 ABC_UvrA The excision 90.4 0.22 4.7E-06 50.3 3.1 21 49-69 23-43 (176)
470 PRK13651 cobalt transporter AT 90.3 0.25 5.5E-06 54.3 3.8 29 49-79 35-63 (305)
471 cd03229 ABC_Class3 This class 90.3 0.28 6E-06 49.3 3.8 28 49-78 28-55 (178)
472 cd03292 ABC_FtsE_transporter F 90.3 0.26 5.7E-06 50.9 3.7 22 49-70 29-50 (214)
473 TIGR03608 L_ocin_972_ABC putat 90.3 0.24 5.2E-06 50.8 3.4 23 49-71 26-48 (206)
474 cd03256 ABC_PhnC_transporter A 90.2 0.25 5.4E-06 52.0 3.6 23 49-71 29-51 (241)
475 PRK15112 antimicrobial peptide 90.2 0.27 5.9E-06 52.9 3.9 28 49-78 41-68 (267)
476 cd03257 ABC_NikE_OppD_transpor 90.2 0.26 5.6E-06 51.4 3.6 28 49-78 33-60 (228)
477 cd03268 ABC_BcrA_bacitracin_re 90.2 0.26 5.5E-06 50.8 3.5 23 49-71 28-50 (208)
478 CHL00131 ycf16 sulfate ABC tra 90.2 0.26 5.6E-06 52.4 3.6 22 49-70 35-56 (252)
479 PRK10895 lipopolysaccharide AB 90.1 0.28 6E-06 51.8 3.9 28 49-78 31-58 (241)
480 PRK11248 tauB taurine transpor 90.1 0.26 5.7E-06 52.7 3.7 23 49-71 29-51 (255)
481 cd03230 ABC_DR_subfamily_A Thi 90.1 0.29 6.4E-06 48.9 3.8 23 49-71 28-50 (173)
482 COG3839 MalK ABC-type sugar tr 90.1 0.26 5.5E-06 54.7 3.6 23 49-71 31-53 (338)
483 cd03235 ABC_Metallic_Cations A 90.1 0.26 5.7E-06 50.9 3.5 23 49-71 27-49 (213)
484 COG1135 AbcC ABC-type metal io 90.1 0.7 1.5E-05 50.2 6.7 69 150-224 126-200 (339)
485 cd03260 ABC_PstB_phosphate_tra 90.0 0.22 4.8E-06 52.0 2.9 23 49-71 28-50 (227)
486 TIGR03864 PQQ_ABC_ATP ABC tran 90.0 0.28 6.1E-06 51.6 3.7 23 49-71 29-51 (236)
487 COG4559 ABC-type hemin transpo 90.0 0.29 6.4E-06 50.4 3.6 27 49-76 29-55 (259)
488 cd03253 ABCC_ATM1_transporter 90.0 0.27 5.8E-06 51.6 3.6 28 49-78 29-56 (236)
489 cd03273 ABC_SMC2_euk Eukaryoti 90.0 0.25 5.4E-06 52.6 3.3 27 44-70 22-48 (251)
490 PRK10584 putative ABC transpor 89.9 0.27 6E-06 51.3 3.6 23 49-71 38-60 (228)
491 PRK10908 cell division protein 89.9 0.29 6.3E-06 50.9 3.7 29 48-78 29-57 (222)
492 PRK14250 phosphate ABC transpo 89.9 0.3 6.5E-06 51.6 3.9 28 49-78 31-58 (241)
493 cd03298 ABC_ThiQ_thiamine_tran 89.9 0.31 6.7E-06 50.3 3.8 28 49-78 26-53 (211)
494 COG3523 IcmF Type VI protein s 89.9 0.99 2.1E-05 57.6 8.8 28 44-72 122-149 (1188)
495 COG1120 FepC ABC-type cobalami 89.9 0.29 6.2E-06 52.3 3.6 22 49-70 30-51 (258)
496 COG1126 GlnQ ABC-type polar am 89.8 0.32 6.9E-06 50.3 3.7 23 49-71 30-52 (240)
497 cd01983 Fer4_NifH The Fer4_Nif 89.8 1.3 2.9E-05 38.4 7.5 21 50-70 2-22 (99)
498 TIGR02323 CP_lyasePhnK phospho 89.8 0.28 6.2E-06 52.1 3.6 28 49-78 31-58 (253)
499 cd03246 ABCC_Protease_Secretio 89.8 0.32 6.8E-06 48.7 3.7 23 49-71 30-52 (173)
500 cd03236 ABC_RNaseL_inhibitor_d 89.8 0.27 5.8E-06 52.7 3.4 30 49-80 28-57 (255)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=1.5e-106 Score=943.95 Aligned_cols=649 Identities=41% Similarity=0.600 Sum_probs=582.2
Q ss_pred CCCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCC-ccc
Q 003355 20 PLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTD-EEY 98 (827)
Q Consensus 20 ~~~~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~-~~~ 98 (827)
..+..+++++|+++|.+..+|....+++|+|+|||.||+||||+||+|+|++|||||.|+|||||++++|.+.... .+|
T Consensus 2 ~~~~~li~~vn~lqd~~~~l~~~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~ 81 (657)
T KOG0446|consen 2 GLMRLLIPLSNPLQDKLEILGSSSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEE 81 (657)
T ss_pred chhhhccccchHHHHHHHHhcCCCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccc
Confidence 3678899999999999999997778999999999999999999999999999999999999999999999988654 799
Q ss_pred ceee-cCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHH
Q 003355 99 GEFL-HLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTM 177 (827)
Q Consensus 99 ~~~~-~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~l 177 (827)
++|. |.+++.++||++++++|..+|++.+|.++|+|+.+|.++|++|+++++|||||||++++++++||.|++.++++|
T Consensus 82 ~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~m 161 (657)
T KOG0446|consen 82 ASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSM 161 (657)
T ss_pred hhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHH
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCc
Q 003355 178 IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQ 257 (827)
Q Consensus 178 v~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~ 257 (827)
++.|+.++++|||+|++||+|+++++++++|+++||.|.|||||+||+|++++|+++..+|.|..+++++||++|+||+|
T Consensus 162 i~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v~vvnR~q 241 (657)
T KOG0446|consen 162 IEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYVGVVNRSQ 241 (657)
T ss_pred HHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCccccccceeeeeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhhccCCCccccccccCCchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCCCC
Q 003355 258 EDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITE 337 (827)
Q Consensus 258 ~d~~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~i~~~l~~~~~el~~lg~~~~ 337 (827)
++++.++++.+++..|..||.+||.|..+.+++|+++|.++|+.+|..||+.++|.|+..|+.++.+.++++..||. ..
T Consensus 242 ~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~~g~-~~ 320 (657)
T KOG0446|consen 242 SIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELNRIGA-VD 320 (657)
T ss_pred hhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcc-cC
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999997 33
Q ss_pred ChhhHHHHHHHHHHHHHHHhhhhccCcccccccccccccchHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHhhcCCCC
Q 003355 338 SKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKS 417 (827)
Q Consensus 338 ~~~~~~~~l~~~i~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~F~~~l~~~~~~~~l~~~dI~~~i~n~~G~~~ 417 (827)
........++.++..|+..|...+.|..+...+.+++|||||+|+|++.|...+..++|.+.+...+|++++.|++|+++
T Consensus 321 ~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~~~~G~~~ 400 (657)
T KOG0446|consen 321 VDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVSEASGIRP 400 (657)
T ss_pred CccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHHhccCCCc
Confidence 34445678899999999999999999988755889999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhhhh-ccCcchHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 003355 418 ALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVN-ELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHI 496 (827)
Q Consensus 418 ~lfvp~~~Fe~Lvk~qI~~l~~Psl~c~~~V~~el~~i~~~~~~~-~~~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~l 496 (827)
++|+|+.+||.+|++||+++++|+++|++.|+++|.+++++|... +|.|||.|+..+.+++.+++++++.+++++|.++
T Consensus 401 ~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~~l~rfp~l~~~~~~~~~~~~~~~~~~t~~~v~~~ 480 (657)
T KOG0446|consen 401 SLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRATELKRFPVLYSELVEIASSLIAEGLDETKKAVKNL 480 (657)
T ss_pred cccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876 8999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCCCccchH-HHHHHHHhhhhcCCCCCccccCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCCCCcc
Q 003355 497 IEMEMDYINTSHPNFIGGSK-AVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRPT 575 (827)
Q Consensus 497 i~~E~~yInT~hpdF~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (827)
|+||.+||||.||||+++.+ |+...... +.+ .. .+.. +.
T Consensus 481 i~~e~~yinT~h~df~~~~~~al~~~~~~--~~~-------~~-------------------------~~~~-~~----- 520 (657)
T KOG0446|consen 481 IDLEQSYLNTDHPDFRSLTDSALSSVTSP--SIA-------AM-------------------------KLIS-AQ----- 520 (657)
T ss_pred HHHHHHHhcCcChhhhhhHHHHHHHhhcc--ccc-------cc-------------------------cccc-cc-----
Confidence 99999999999999999875 43221110 000 00 0000 00
Q ss_pred hhhcccCCCCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCCCchhhhhhHhhhccCCCCccCCCCCCCchhHHHHHH
Q 003355 576 VEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQENVEIA 655 (827)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~~e~~ei~ 655 (827)
. .. ......++....+.+. ...+.+...+..+.....+++++..+++
T Consensus 521 ----~-~~--~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (657)
T KOG0446|consen 521 ----L-LK--EELGECNSALKAIKNA--------------------------VGSIRLDPSDIVLSRALVLKKRECKETE 567 (657)
T ss_pred ----c-cc--cccccccchhhhhcch--------------------------hhhhhhcccchhhhhhhhcchhhhHHHH
Confidence 0 00 0000000000001000 0001222233344444567788899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHhhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 003355 656 VTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYR-ENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAF 734 (827)
Q Consensus 656 ~ir~ll~SYf~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~Ly~-~~~~~~LL~E~~~ia~kR~~~~~~l~~L~~A~ 734 (827)
.|+.++.|||+||+|+|+|+|||+|||||||.+++.||++|+++||+ .+.+++||+|+|.++++|+.|++|+++|++|.
T Consensus 568 ~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~~~~~~~ll~E~~~i~~~R~~~~~~l~~L~~a~ 647 (657)
T KOG0446|consen 568 EISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYAGDEQLESLLKEDPRIKRRRELQQKRLLALQKAL 647 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHccccc
Q 003355 735 RTLDELPL 742 (827)
Q Consensus 735 ~~L~~i~~ 742 (827)
.+|..+..
T Consensus 648 ~ii~~~~~ 655 (657)
T KOG0446|consen 648 SILATVAQ 655 (657)
T ss_pred HHHHHHhc
Confidence 99988764
No 2
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=1.1e-54 Score=472.19 Aligned_cols=286 Identities=46% Similarity=0.777 Sum_probs=253.7
Q ss_pred HHhhccccccccceEEEEEcCCchhhhhhhhHHHHHHHHHhhccCCCccccccccCCchHHHHHHHHHHHHHHHhhccch
Q 003355 235 RNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGL 314 (827)
Q Consensus 235 ~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~I~~~LP~l 314 (827)
.++|.|+++||++|||+|+||+|+|++.+.|+.+++..|.+||++||+|+...++|||++|+.+|+++|.+||+++||.|
T Consensus 2 ~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l 81 (295)
T PF01031_consen 2 MDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSL 81 (295)
T ss_dssp HHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHH
Confidence 57899999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHHHHHHhhhhccCccc-ccccccccccchHHHHHHHHHHHhhh
Q 003355 315 KSRISSALVSVAKEHASYGEITE-SKAGQGALLLNILSKYSEAFSSMVEGKNE-EMSTSELSGGARIHYIFQSIFVKSLE 392 (827)
Q Consensus 315 ~~~i~~~l~~~~~el~~lg~~~~-~~~~~~~~l~~~i~~f~~~~~~~i~G~~~-~~~~~~l~ggari~~~f~~~F~~~l~ 392 (827)
+.+|+..|.+++.+|+.||++++ +..+++.+|++++++|++.|+++++|.+. ...+.++.||+||+++|++.|...+.
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~ 161 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLE 161 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999988 77789999999999999999999999998 47788999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhhhhccCcchHHHH
Q 003355 393 EVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRK 472 (827)
Q Consensus 393 ~~~~~~~l~~~dI~~~i~n~~G~~~~lfvp~~~Fe~Lvk~qI~~l~~Psl~c~~~V~~el~~i~~~~~~~~~~rfp~L~~ 472 (827)
.++++..+++++|+++|++++|+++|+|+|+.+|+.||++||++|++||++|++.|+++|.+++.+|+..+|.+||.|++
T Consensus 162 ~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~ 241 (295)
T PF01031_consen 162 KIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLKE 241 (295)
T ss_dssp HTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHH
T ss_pred hhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHhcccCCCCCCCccchHHHHH
Q 003355 473 RMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSKAVEI 520 (827)
Q Consensus 473 ~i~~~v~~~l~~~~~~a~~~i~~li~~E~~yInT~hpdF~~~~~a~~~ 520 (827)
++.+++.++++++.++|+++|++||+||++||||+||||+++..++..
T Consensus 242 ~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~~~~~~~~~ 289 (295)
T PF01031_consen 242 AIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFLGELQAIRQ 289 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--TTS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876644
No 3
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=1.4e-46 Score=392.61 Aligned_cols=239 Identities=63% Similarity=1.024 Sum_probs=227.5
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCccccee
Q 003355 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF 101 (827)
Q Consensus 22 ~~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~ 101 (827)
|+++++++|+|++++..+|++..+++|+|+|||+||+|||||||+|+|..|+|++.|.|||||+++++++. ..+|.++
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~--~~~~~~~ 78 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS--STEYAEF 78 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC--CCcceEE
Confidence 57899999999999878999989999999999999999999999999999899999999999999999875 4689999
Q ss_pred ecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHH
Q 003355 102 LHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSY 181 (827)
Q Consensus 102 ~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~y 181 (827)
++.+++.+.++++++++|..++++..+.+++||+++|+|+|++|++++++||||||++..+..+|+.++.+.+++++..|
T Consensus 79 ~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~y 158 (240)
T smart00053 79 LHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQF 158 (240)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999989999999999999999999999999999988777777788999999999999
Q ss_pred hcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCchhhh
Q 003355 182 IKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 182 i~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
++++++|||+|++|+.|+.+++++++++++++.+.|||+|+||+|.+++++++.+++.|+.++|++|||+|+||+|+|++
T Consensus 159 i~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v~nr~~~d~~ 238 (240)
T smart00053 159 ISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNRSQKDIE 238 (240)
T ss_pred HhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEEECCChHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred h
Q 003355 262 F 262 (827)
Q Consensus 262 ~ 262 (827)
.
T Consensus 239 ~ 239 (240)
T smart00053 239 G 239 (240)
T ss_pred c
Confidence 4
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=100.00 E-value=8e-33 Score=300.93 Aligned_cols=286 Identities=27% Similarity=0.467 Sum_probs=232.7
Q ss_pred CCCchHHHHHHHHHHHHHhCCC--CCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCC--
Q 003355 21 LGGSVIPLVNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTD-- 95 (827)
Q Consensus 21 ~~~~~~~~~~~l~d~~~~~g~~--~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~-- 95 (827)
+..+||++...+-|+|+..... ..-.||+|||||+|||||+|+||.|....+||||+| +.||.|+.+.|...+.-
T Consensus 280 lKkSLIDMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVA 359 (980)
T KOG0447|consen 280 LKKSLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVA 359 (980)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhh
Confidence 4557888888888888866543 335899999999999999999999999999999987 78999999999766531
Q ss_pred ---cccceeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHH
Q 003355 96 ---EEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEA 172 (827)
Q Consensus 96 ---~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~ 172 (827)
+.-.+| .=.+..|+.++|.+++-.+......++.+|+++|.+.+.||+.+.++||||||++++-..+-..|..+
T Consensus 360 qFrDSsREf---DLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd 436 (980)
T KOG0447|consen 360 LFKDSSREF---DLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKE 436 (980)
T ss_pred hhccccccc---cccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchH
Confidence 111111 11245788899999999888888888999999999999999999999999999998877776677778
Q ss_pred HHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCc----ccHHHhhcccccccc-c
Q 003355 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG----TDARNLLLGKVIPLR-L 247 (827)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~----~~~~~~l~~~~~~l~-l 247 (827)
.|..|.+.|+.+|++||||+-+.+.|...+..-.+..++||.|.|||+|+||.|+..+. ....+++.|+..|++ +
T Consensus 437 ~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKAL 516 (980)
T KOG0447|consen 437 TIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKAL 516 (980)
T ss_pred HHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhc
Confidence 89999999999999999999999999999888899999999999999999999998652 246799999999996 9
Q ss_pred eEEEEEcCCchhhhhhhhHHHHHHHHHhhccCCCcccc-c--cccCCchHHHHHHHHHHHHHHHhhcc
Q 003355 248 GYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNG-L--ADRCGVPQLAKKLNQILVQHIKAILP 312 (827)
Q Consensus 248 G~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~~~~-~--~~~~Gi~~L~~~L~~~L~~~I~~~LP 312 (827)
|||+|+.-... ...|+++.+..|+.||.+...+.. + +..+.+.+|.=..+.-+...++.++.
T Consensus 517 GYfaVVTGrGn---ssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiE 581 (980)
T KOG0447|consen 517 GYFAVVTGKGN---SSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVE 581 (980)
T ss_pred ceeEEEecCCC---cchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHH
Confidence 99998853222 234788899999999998766532 2 34566666666667766666665443
No 5
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.94 E-value=1.1e-26 Score=207.69 Aligned_cols=91 Identities=38% Similarity=0.666 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHHHHHH
Q 003355 650 ENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRV 729 (827)
Q Consensus 650 e~~ei~~ir~ll~SYf~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~Ly~~~~~~~LL~E~~~ia~kR~~~~~~l~~ 729 (827)
|..+++.|+.|+.|||+||+|+|+|+|||+|||||||.+++.||++|+++||+++.+++||+|||+|++||+.|++++++
T Consensus 2 e~~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~~~~~~LL~E~~~i~~kR~~~~~~l~~ 81 (92)
T smart00302 2 EDSELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEELLDELLEEDPEIASKRKELKKRLEL 81 (92)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccc
Q 003355 730 LQQAFRTLDEL 740 (827)
Q Consensus 730 L~~A~~~L~~i 740 (827)
|++|.++|++|
T Consensus 82 L~~A~~~l~~v 92 (92)
T smart00302 82 LKKARQIIAAV 92 (92)
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 6
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.88 E-value=1.2e-22 Score=182.14 Aligned_cols=92 Identities=43% Similarity=0.706 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHHHHH
Q 003355 649 QENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLR 728 (827)
Q Consensus 649 ~e~~ei~~ir~ll~SYf~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~Ly~~~~~~~LL~E~~~ia~kR~~~~~~l~ 728 (827)
||..+++.|+.+++|||+||+|||.|+|||+||||||+.+++.|+.+|+..||.++.+++||+|||+|+++|+.|+++++
T Consensus 1 ~e~~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~~~~Ll~Ed~~i~~kR~~l~~~~~ 80 (92)
T PF02212_consen 1 REQREVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEEDLEELLQEDPEIAEKREELKKKLE 80 (92)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGCCCCT--GHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHccc
Q 003355 729 VLQQAFRTLDEL 740 (827)
Q Consensus 729 ~L~~A~~~L~~i 740 (827)
+|++|+++|++|
T Consensus 81 ~L~~A~~~L~~~ 92 (92)
T PF02212_consen 81 RLKKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 999999999875
No 7
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.87 E-value=1.3e-21 Score=194.55 Aligned_cols=166 Identities=33% Similarity=0.451 Sum_probs=134.3
Q ss_pred EEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcc--cceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEE--YGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~--~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
|+|+|.+|||||||||+|+|.+++|.+.+.||++|++++......... +..........+.++.++++.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 799999999999999999999999999999999999999876654221 111111124567889999999988887777
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l 207 (827)
+....++...+.+....+...+++||||||+.+.... ..+++.+|+.+ .+++|+|++++.++.+.+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~---------~~~~~~~~~~~-~d~vi~V~~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSE---------HTEITEEYLPK-ADVVIFVVDANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTT---------TSHHHHHHHST-TEEEEEEEETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhh---------hHHHHHHhhcc-CCEEEEEeccCcccchHHHHHH
Confidence 6777888889999999999999999999999764322 22788899954 4599999999999999999999
Q ss_pred HHHhCCCCCceEEeeecC
Q 003355 208 AGIADPDGYRTIGIITKL 225 (827)
Q Consensus 208 a~~~dp~g~rtIgVlTK~ 225 (827)
.+..++...++|+|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 999999999999999995
No 8
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.61 E-value=2e-13 Score=160.86 Aligned_cols=537 Identities=27% Similarity=0.319 Sum_probs=378.4
Q ss_pred ccceeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHH
Q 003355 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRT 176 (827)
Q Consensus 97 ~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~ 176 (827)
+|..+.+.+...+.++.++..+....+....+...++...++.+.+..+....++.+|.||+...+...++.++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (546)
T COG0699 2 EEFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDEL 81 (546)
T ss_pred CcchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHH
Confidence 45566667777788899999999999988888899999999999999999999999999999999999999998877778
Q ss_pred HHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCC
Q 003355 177 MIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRS 256 (827)
Q Consensus 177 lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs 256 (827)
+-..++...+.+|.....++.+..+.+....++..++ +.|+.+.++.++..... +..|++.+.+..
T Consensus 82 ~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 147 (546)
T COG0699 82 LDLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDAL 147 (546)
T ss_pred HHhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCch
Confidence 8889999999999999999999998888888887776 77888887765543211 677888888899
Q ss_pred chhhhhhhhHHHHHHHHHhhccCCCccccccccCCchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCCC
Q 003355 257 QEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT 336 (827)
Q Consensus 257 ~~d~~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~i~~~l~~~~~el~~lg~~~ 336 (827)
+.++....+.......+..+|..++.|.+....++..++...+.+++..++....+............ .+++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 220 (546)
T COG0699 148 ETDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN- 220 (546)
T ss_pred hHHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch-
Confidence 99888888888888899999999999998888899999999999999999998877765444433321 22211
Q ss_pred CChhhHHHHHHHHHHHHHHHhhhhccCcccccccccccccchHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHhhcCCC
Q 003355 337 ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPK 416 (827)
Q Consensus 337 ~~~~~~~~~l~~~i~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~F~~~l~~~~~~~~l~~~dI~~~i~n~~G~~ 416 (827)
.+......|...+. ++.+|+|++.. ...+++...+.+..+.....+..|.+
T Consensus 221 --------~~~~~~~~~~~~~~-------------~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~ 271 (546)
T COG0699 221 --------EVLAVIQTLLKRLS-------------ELVRGARIRLN--------IILFSDLEEVSDSPVLLKELASKGER 271 (546)
T ss_pred --------HHHHHHHHHHHHHH-------------HHhccchhhhh--------hcccchHHHhhhhhhHHHHHcccCCC
Confidence 23444445555444 22345555543 12233344445556667677777887
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhh-hhccCcchHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 003355 417 SALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCL-VNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGH 495 (827)
Q Consensus 417 ~~lfvp~~~Fe~Lvk~qI~~l~~Psl~c~~~V~~el~~i~~~~~-~~~~~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~ 495 (827)
...|.....|..+|..++..+..+..+|...+.+++.+++.... ......|+.+...+...+.++..+.....+..+..
T Consensus 272 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (546)
T COG0699 272 PSLLSGLTLLDTLVETPIGQFDTQINQLLRKLISELVRILLKELESASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLA 351 (546)
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 77888999999999999999999888899999999998854443 34468899999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCccchHHHHHHHHhhhhcCCC---CCccccCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCCC
Q 003355 496 IIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKVP---LPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGV 572 (827)
Q Consensus 496 li~~E~~yInT~hpdF~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (827)
.++++..|++|.||+|.....+........-..... .+....++- .. ..... ...........
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~----~~~~~~~~~~~-------- 417 (546)
T COG0699 352 IIDIEERYINTKHPLFLSLRQAAAILSKVLDNLEALLRSLDDSRLREL-SD-MGLNS----LLSNNLEEHLL-------- 417 (546)
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccch-hh-cccch----hHHHHHHHHhh--------
Confidence 999999999999999998766665543322110000 000000000 00 00000 00000000000
Q ss_pred CcchhhcccCCCCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCCCchhhhhhHhhhccCCCCccCCCCCCCchhHHH
Q 003355 573 RPTVEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQENV 652 (827)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~~e~~ 652 (827)
.+.+... . |.+....... ... .-... ..... . .......+...
T Consensus 418 ---------------~~~~~~~-~-~~~~~~~~~~-~~~-----~~~~~--~~~~~---~---------~~~~~~~~~~~ 460 (546)
T COG0699 418 ---------------GSDFSLY-K-FLNEFLELKK-LDA-----LLATL--GEALR---R---------LTGLLPERKTL 460 (546)
T ss_pred ---------------cchhhHH-H-HHHHHhhhcc-chh-----hhccc--hHHHH---H---------hhcccchhhhh
Confidence 0000000 0 0000000000 000 00000 00000 0 00111122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 003355 653 EIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQ 732 (827)
Q Consensus 653 ei~~ir~ll~SYf~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~Ly~~~~~~~LL~E~~~ia~kR~~~~~~l~~L~~ 732 (827)
+...++.++.+| .++...+.|.|++++++++.+..++..+......+|.+...+++..+.+.+.+.|..+.+.+..+.+
T Consensus 461 ~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 539 (546)
T COG0699 461 EKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQLEDELLRTAEEILELRLLLEQFLEALKL 539 (546)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 334458999999 9999999999999999999888888888888888888899999999999999999999999999998
Q ss_pred HHH
Q 003355 733 AFR 735 (827)
Q Consensus 733 A~~ 735 (827)
+..
T Consensus 540 ~~~ 542 (546)
T COG0699 540 AAR 542 (546)
T ss_pred HHH
Confidence 865
No 9
>PRK09866 hypothetical protein; Provisional
Probab=99.61 E-value=4.4e-13 Score=153.83 Aligned_cols=220 Identities=20% Similarity=0.195 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCccccee-----
Q 003355 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF----- 101 (827)
Q Consensus 27 ~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~----- 101 (827)
.-+.+|+.-+..+.. .-|.|+|+|..|+|||||+|+|+|..++|.+...+|.+|+.++.....+ ++.-+
T Consensus 53 ~ri~~L~~~L~Kv~~----~~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~r--e~~L~~dtvg 126 (741)
T PRK09866 53 ERHAMLNNELRKISR----LEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQK--EPVLHFSHVA 126 (741)
T ss_pred HHHHHHHHHHHHHhc----cceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCcC--ceeeecCCcc
Confidence 334444544444432 2299999999999999999999999999999999999999776543222 11111
Q ss_pred -ec-----CCCc--------------cccChHHHHHHHHHhhh----------------------hh---cCCCCcccc-
Q 003355 102 -LH-----LPGK--------------RFYDFSEIRREIQAQTD----------------------KE---AGGNKGVSD- 135 (827)
Q Consensus 102 -~~-----~~g~--------------~~~d~~~i~~~i~~~t~----------------------~~---~g~~~~~s~- 135 (827)
.. +|.. ...|..++...+..... +. .+..-.|..
T Consensus 127 fI~~ll~~Lp~~Lv~~f~atl~e~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~y 206 (741)
T PRK09866 127 PIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAY 206 (741)
T ss_pred chHHHHHHhhHHHHHhhhhHHHHHHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHH
Confidence 00 0000 00111122211111100 00 000001100
Q ss_pred ------cceEEEEecCC-----cccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 136 ------KQIRLKIFSPH-----VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 136 ------~~i~l~i~~p~-----~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
-+|.++..... ..+++||||||+..... ..+.+++.+.+...+ +||+|++++......+
T Consensus 207 a~~~~~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~--------~~L~k~M~eqL~eAD-vVLFVVDat~~~s~~D- 276 (741)
T PRK09866 207 AAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQ--------PHLQKMLNQQLARAS-AVLAVLDYTQLKSISD- 276 (741)
T ss_pred hhhhcCceeeeeeeeccccccccCCEEEEECCCCCCccc--------hHHHHHHHHHHhhCC-EEEEEEeCCCCCChhH-
Confidence 11222222112 25799999999975421 123334445777776 8999999887666555
Q ss_pred HHHHHHhCCCCC--ceEEeeecCCCCCCccc----HHHhhcccc--ccc-cceEEEEEcCCchhhhh
Q 003355 205 LQIAGIADPDGY--RTIGIITKLDIMDRGTD----ARNLLLGKV--IPL-RLGYVGVVNRSQEDIMF 262 (827)
Q Consensus 205 l~la~~~dp~g~--rtIgVlTK~D~~~~~~~----~~~~l~~~~--~~l-~lG~~~V~nrs~~d~~~ 262 (827)
..+++.+...++ ++|+|+||+|+.++..+ ..+++.... ... .-..|+|..+....++.
T Consensus 277 eeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~ 343 (741)
T PRK09866 277 EEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANR 343 (741)
T ss_pred HHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHH
Confidence 456666666564 99999999999864432 223322111 111 23567888877765543
No 10
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=3.1e-14 Score=142.55 Aligned_cols=128 Identities=23% Similarity=0.352 Sum_probs=94.8
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCcc--ccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC--TRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~--Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (827)
-++|.|+++|..|+|||||||+|+|..-|-|.+.++ |+.+.
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iN------------------------------------- 64 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLIN------------------------------------- 64 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeE-------------------------------------
Confidence 388999999999999999999999987555544422 11110
Q ss_pred hhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccE--EEeecCCCCccc
Q 003355 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCL--ILAVTPANSDLA 200 (827)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~i--IL~V~~a~~d~~ 200 (827)
..++. ..+.|||+||+.-..+. ....+.|.+++..|++...++ ++.++|+...+.
T Consensus 65 ----------------ff~~~----~~~~lVDlPGYGyAkv~---k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~ 121 (200)
T COG0218 65 ----------------FFEVD----DELRLVDLPGYGYAKVP---KEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK 121 (200)
T ss_pred ----------------EEEec----CcEEEEeCCCcccccCC---HHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc
Confidence 01111 12789999999654332 467789999999999954334 444578888887
Q ss_pred chHHHHHHHHhCCCCCceEEeeecCCCCCCccc
Q 003355 201 NSDALQIAGIADPDGYRTIGIITKLDIMDRGTD 233 (827)
Q Consensus 201 ~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~ 233 (827)
..| .+|...+...+.++++|+||+|.+..+..
T Consensus 122 ~~D-~em~~~l~~~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 122 DLD-REMIEFLLELGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred HHH-HHHHHHHHHcCCCeEEEEEccccCChhHH
Confidence 777 58888888889999999999999986543
No 11
>COG1159 Era GTPase [General function prediction only]
Probab=99.53 E-value=6.4e-14 Score=147.59 Aligned_cols=125 Identities=29% Similarity=0.354 Sum_probs=93.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
.|++||.+|+|||||+|+|+|.++. ++|+.| +|++....|.+.
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~Kis-----IvS~k~------QTTR~~I~GI~t-------------------------- 50 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKIS-----IVSPKP------QTTRNRIRGIVT-------------------------- 50 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceE-----eecCCc------chhhhheeEEEE--------------------------
Confidence 5899999999999999999999974 445454 444433322221
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHH
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA 208 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la 208 (827)
-+..+++||||||+.... ..+.+.+.+.+.+.+...+ +||+|+++...+...| ..++
T Consensus 51 ----------------~~~~QiIfvDTPGih~pk-----~~l~~~m~~~a~~sl~dvD-lilfvvd~~~~~~~~d-~~il 107 (298)
T COG1159 51 ----------------TDNAQIIFVDTPGIHKPK-----HALGELMNKAARSALKDVD-LILFVVDADEGWGPGD-EFIL 107 (298)
T ss_pred ----------------cCCceEEEEeCCCCCCcc-----hHHHHHHHHHHHHHhccCc-EEEEEEeccccCCccH-HHHH
Confidence 112479999999998763 4566777788888888876 9999999998887766 3455
Q ss_pred HHhCCCCCceEEeeecCCCCCCccc
Q 003355 209 GIADPDGYRTIGIITKLDIMDRGTD 233 (827)
Q Consensus 209 ~~~dp~g~rtIgVlTK~D~~~~~~~ 233 (827)
..+.....+.|+++||+|...+.+.
T Consensus 108 ~~lk~~~~pvil~iNKID~~~~~~~ 132 (298)
T COG1159 108 EQLKKTKTPVILVVNKIDKVKPKTV 132 (298)
T ss_pred HHHhhcCCCeEEEEEccccCCcHHH
Confidence 5555556899999999999987653
No 12
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.50 E-value=1.9e-12 Score=144.03 Aligned_cols=175 Identities=23% Similarity=0.294 Sum_probs=114.0
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCC-CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccc
Q 003355 21 LGGSVIPLVNKLQDIFAQLGSQSTI-ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYG 99 (827)
Q Consensus 21 ~~~~~~~~~~~l~d~~~~~g~~~~~-~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~ 99 (827)
+.+++-.+...|.++++....+..+ +--.||++|.+|+|||||||+|+|.+. -++|..| +|+++- -.
T Consensus 190 i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~------GTTRDv-ie 257 (454)
T COG0486 190 IREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIA------GTTRDV-IE 257 (454)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCC------CCccce-EE
Confidence 5566667777777777765544333 445799999999999999999999984 4555555 665521 11
Q ss_pred eeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHH
Q 003355 100 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIM 179 (827)
Q Consensus 100 ~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~ 179 (827)
+.++.. ...+.|+||.|+..+. +.+++.=-+-.+
T Consensus 258 e~i~i~-----------------------------------------G~pv~l~DTAGiRet~-----d~VE~iGIeRs~ 291 (454)
T COG0486 258 EDINLN-----------------------------------------GIPVRLVDTAGIRETD-----DVVERIGIERAK 291 (454)
T ss_pred EEEEEC-----------------------------------------CEEEEEEecCCcccCc-----cHHHHHHHHHHH
Confidence 111221 1368999999998552 234433333456
Q ss_pred HHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCchh
Q 003355 180 SYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 259 (827)
Q Consensus 180 ~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d 259 (827)
+.+++++ +||+|++++..+...+ ..+.. .-+.++++++|+||.|+..+...... ...-+.-++.+..+..++
T Consensus 292 ~~i~~AD-lvL~v~D~~~~~~~~d-~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 292 KAIEEAD-LVLFVLDASQPLDKED-LALIE-LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEG 363 (454)
T ss_pred HHHHhCC-EEEEEEeCCCCCchhh-HHHHH-hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccC
Confidence 6777776 9999999999766666 33333 55667999999999999975432110 111223356677776665
Q ss_pred hh
Q 003355 260 IM 261 (827)
Q Consensus 260 ~~ 261 (827)
++
T Consensus 364 l~ 365 (454)
T COG0486 364 LD 365 (454)
T ss_pred HH
Confidence 44
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.46 E-value=1e-13 Score=135.91 Aligned_cols=118 Identities=25% Similarity=0.322 Sum_probs=75.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
+|+++|.+|+|||||+|+|+|... .++ .+| +++.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v~-----n~p------G~Tv---------------------------------- 35 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KVG-----NWP------GTTV---------------------------------- 35 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EEE-----EST------TSSS----------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-eec-----CCC------CCCe----------------------------------
Confidence 699999999999999999999973 111 111 1111
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc-CCccEEEeecCCCCcccchHHHHH
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK-QPSCLILAVTPANSDLANSDALQI 207 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~-~~~~iIL~V~~a~~d~~~~d~l~l 207 (827)
+...-.+... ...+.||||||+.+..... .-+.++.+|+. +.-++|++|++|+.- ...+.+
T Consensus 36 -------~~~~g~~~~~-~~~~~lvDlPG~ysl~~~s-------~ee~v~~~~l~~~~~D~ii~VvDa~~l---~r~l~l 97 (156)
T PF02421_consen 36 -------EKKEGIFKLG-DQQVELVDLPGIYSLSSKS-------EEERVARDYLLSEKPDLIIVVVDATNL---ERNLYL 97 (156)
T ss_dssp -------EEEEEEEEET-TEEEEEEE----SSSSSSS-------HHHHHHHHHHHHTSSSEEEEEEEGGGH---HHHHHH
T ss_pred -------eeeeEEEEec-CceEEEEECCCcccCCCCC-------cHHHHHHHHHhhcCCCEEEEECCCCCH---HHHHHH
Confidence 1111111111 1468999999998764321 22345567774 344588888998763 233678
Q ss_pred HHHhCCCCCceEEeeecCCCCCC
Q 003355 208 AGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 208 a~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+.++...|.|+|+|+||+|...+
T Consensus 98 ~~ql~e~g~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 98 TLQLLELGIPVVVVLNKMDEAER 120 (156)
T ss_dssp HHHHHHTTSSEEEEEETHHHHHH
T ss_pred HHHHHHcCCCEEEEEeCHHHHHH
Confidence 88888889999999999999864
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.45 E-value=1.4e-12 Score=144.76 Aligned_cols=123 Identities=25% Similarity=0.374 Sum_probs=96.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
|.|++||.+|+|||||+|+|+|.+. .++-...+++++..|+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----------AIV~D~pGvTRDr~y~~~-------------------------- 46 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----------AIVSDTPGVTRDRIYGDA-------------------------- 46 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----------eEeecCCCCccCCcccee--------------------------
Confidence 8999999999999999999999974 222222255544444321
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l 207 (827)
.+-. ..+.||||+|+.... ++.+.++++..++..+.+++ +||+|+++..+++..| ..+
T Consensus 47 ---------------~~~~-~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eAD-vilfvVD~~~Git~~D-~~i 104 (444)
T COG1160 47 ---------------EWLG-REFILIDTGGLDDGD----EDELQELIREQALIAIEEAD-VILFVVDGREGITPAD-EEI 104 (444)
T ss_pred ---------------EEcC-ceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCC-EEEEEEeCCCCCCHHH-HHH
Confidence 1111 148999999998542 24688899999999999887 8888999999998888 689
Q ss_pred HHHhCCCCCceEEeeecCCCCC
Q 003355 208 AGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 208 a~~~dp~g~rtIgVlTK~D~~~ 229 (827)
|+.+.+.++++|+|+||+|..+
T Consensus 105 a~~Lr~~~kpviLvvNK~D~~~ 126 (444)
T COG1160 105 AKILRRSKKPVILVVNKIDNLK 126 (444)
T ss_pred HHHHHhcCCCEEEEEEcccCch
Confidence 9999888899999999999984
No 15
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.44 E-value=1.7e-12 Score=139.83 Aligned_cols=120 Identities=22% Similarity=0.216 Sum_probs=77.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.|+|+|.+|+|||||+|+|+|.++-.++.- .+||.++. +
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~------------~---------------------------- 41 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS------------G---------------------------- 41 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE------------E----------------------------
Confidence 599999999999999999999875322221 23333211 0
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l 207 (827)
+...+...+.||||||+.... ..+.+.+...+..++...+ ++++|++++...... ..+
T Consensus 42 --------------i~~~~~~qii~vDTPG~~~~~-----~~l~~~~~~~~~~~l~~aD-vvl~VvD~~~~~~~~--~~i 99 (270)
T TIGR00436 42 --------------IHTTGASQIIFIDTPGFHEKK-----HSLNRLMMKEARSAIGGVD-LILFVVDSDQWNGDG--EFV 99 (270)
T ss_pred --------------EEEcCCcEEEEEECcCCCCCc-----chHHHHHHHHHHHHHhhCC-EEEEEEECCCCCchH--HHH
Confidence 000111258999999997542 2234445555677888776 677777776543332 334
Q ss_pred HHHhCCCCCceEEeeecCCCCCC
Q 003355 208 AGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 208 a~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
...+...+.++|+|+||+|+..+
T Consensus 100 ~~~l~~~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 100 LTKLQNLKRPVVLTRNKLDNKFK 122 (270)
T ss_pred HHHHHhcCCCEEEEEECeeCCCH
Confidence 44455557899999999999853
No 16
>PRK00089 era GTPase Era; Reviewed
Probab=99.38 E-value=2e-11 Score=132.93 Aligned_cols=122 Identities=28% Similarity=0.355 Sum_probs=79.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCcc-ccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC-TRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~-Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
-.|+|+|.+|||||||+|+|+|.++...+..+. ||..+. +
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~------------~--------------------------- 46 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIR------------G--------------------------- 46 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEE------------E---------------------------
Confidence 359999999999999999999987633332221 111100 0
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
+......+++||||||+.... ..+.+.+...+..++...+ +|++|+++...+...+ ..
T Consensus 47 ---------------i~~~~~~qi~~iDTPG~~~~~-----~~l~~~~~~~~~~~~~~~D-~il~vvd~~~~~~~~~-~~ 104 (292)
T PRK00089 47 ---------------IVTEDDAQIIFVDTPGIHKPK-----RALNRAMNKAAWSSLKDVD-LVLFVVDADEKIGPGD-EF 104 (292)
T ss_pred ---------------EEEcCCceEEEEECCCCCCch-----hHHHHHHHHHHHHHHhcCC-EEEEEEeCCCCCChhH-HH
Confidence 001112368999999997542 2334455566667777777 6666777776554433 45
Q ss_pred HHHHhCCCCCceEEeeecCCCCCC
Q 003355 207 IAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 207 la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
++..+...+.++++|+||+|+...
T Consensus 105 i~~~l~~~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 105 ILEKLKKVKTPVILVLNKIDLVKD 128 (292)
T ss_pred HHHHHhhcCCCEEEEEECCcCCCC
Confidence 555555556899999999999843
No 17
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.36 E-value=3.9e-12 Score=141.18 Aligned_cols=153 Identities=20% Similarity=0.379 Sum_probs=99.9
Q ss_pred CCCchHHHHHHHHHHHHHhCCC-CC---CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCc
Q 003355 21 LGGSVIPLVNKLQDIFAQLGSQ-ST---IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDE 96 (827)
Q Consensus 21 ~~~~~~~~~~~l~d~~~~~g~~-~~---~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~ 96 (827)
=+..+-+|++.+...+- .... .. .+.-+|+|||.+|+|||||+|+|+|.+-. ++.-+.+|+++
T Consensus 149 Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~-----------Iv~~~aGTTRD- 215 (444)
T COG1160 149 HGRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERV-----------IVSDIAGTTRD- 215 (444)
T ss_pred hccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhccCceE-----------EecCCCCcccc-
Confidence 34456667776666542 1111 11 24679999999999999999999999732 22222233322
Q ss_pred ccceeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHH
Q 003355 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRT 176 (827)
Q Consensus 97 ~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~ 176 (827)
.|...+.. +...++||||.|+.+...-.. .++..--.
T Consensus 216 ----------------------------------------~I~~~~e~-~~~~~~liDTAGiRrk~ki~e--~~E~~Sv~ 252 (444)
T COG1160 216 ----------------------------------------SIDIEFER-DGRKYVLIDTAGIRRKGKITE--SVEKYSVA 252 (444)
T ss_pred ----------------------------------------ceeeeEEE-CCeEEEEEECCCCCccccccc--ceEEEeeh
Confidence 22222221 123589999999976643221 11111111
Q ss_pred HHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 177 MIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 177 lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
-+...|...+ ++++|++|...+..+| ++++..+...|+.+|+|+||||++++.
T Consensus 253 rt~~aI~~a~-vvllviDa~~~~~~qD-~~ia~~i~~~g~~~vIvvNKWDl~~~~ 305 (444)
T COG1160 253 RTLKAIERAD-VVLLVIDATEGISEQD-LRIAGLIEEAGRGIVIVVNKWDLVEED 305 (444)
T ss_pred hhHhHHhhcC-EEEEEEECCCCchHHH-HHHHHHHHHcCCCeEEEEEccccCCch
Confidence 1235566665 8899999999999999 689999999999999999999999863
No 18
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.36 E-value=8.2e-12 Score=130.00 Aligned_cols=183 Identities=20% Similarity=0.220 Sum_probs=115.7
Q ss_pred CCCEE-EEEccCCCCHHHHHHHHhCCCCCccC-CCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 46 ELPQV-AVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 46 ~lP~I-vVvG~qssGKSSlLnaL~G~~~lP~~-~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
.-|-+ .++|.+++|||||||||++.+.-|+. .+.||+-++.+...
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~--------------------------------- 83 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLS--------------------------------- 83 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhh---------------------------------
Confidence 34544 49999999999999999976655664 46666554222111
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d 203 (827)
-+..+|+|+||||+.+.... ...++..+.+|+.+.+ ++|++.++....-..|
T Consensus 84 ---------------------~~~~~l~lwDtPG~gdg~~~------D~~~r~~~~d~l~~~D-LvL~l~~~~draL~~d 135 (296)
T COG3596 84 ---------------------YDGENLVLWDTPGLGDGKDK------DAEHRQLYRDYLPKLD-LVLWLIKADDRALGTD 135 (296)
T ss_pred ---------------------ccccceEEecCCCcccchhh------hHHHHHHHHHHhhhcc-EEEEeccCCCccccCC
Confidence 01137999999999876433 3578899999999887 9999999876543334
Q ss_pred HHHHHHHhCC-C-CCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCchhhhhhhhHHHHHHHHHhhccC-C
Q 003355 204 ALQIAGIADP-D-GYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRS-R 280 (827)
Q Consensus 204 ~l~la~~~dp-~-g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~-~ 280 (827)
..+++.+-- . ++|+|+|+|..|...++.++. ...+.....+.. -+++....-.+||.. +
T Consensus 136 -~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~---------------~~~~~p~~a~~q--fi~~k~~~~~~~~q~V~ 197 (296)
T COG3596 136 -EDFLRDVIILGLDKRVLFVVTQADRAEPGREWD---------------SAGHQPSPAIKQ--FIEEKAEALGRLFQEVK 197 (296)
T ss_pred -HHHHHHHHHhccCceeEEEEehhhhhccccccc---------------cccCCCCHHHHH--HHHHHHHHHHHHHhhcC
Confidence 345554432 2 389999999999998764332 111111111111 122222223344544 7
Q ss_pred Cccccc-cccCCchHHHHHHHHHHHHHH
Q 003355 281 PVYNGL-ADRCGVPQLAKKLNQILVQHI 307 (827)
Q Consensus 281 ~~~~~~-~~~~Gi~~L~~~L~~~L~~~I 307 (827)
|+|..- ..-+|+..|..+|-+.+-.+-
T Consensus 198 pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 198 PVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred CeEEeccccCccHHHHHHHHHHhCcccc
Confidence 777544 556999999888877665443
No 19
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.35 E-value=1.8e-11 Score=136.22 Aligned_cols=147 Identities=22% Similarity=0.347 Sum_probs=91.2
Q ss_pred chHHHHHHHHHHHHHhCCC----CCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccc
Q 003355 24 SVIPLVNKLQDIFAQLGSQ----STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYG 99 (827)
Q Consensus 24 ~~~~~~~~l~d~~~~~g~~----~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~ 99 (827)
++-.+..+|.++.++...+ ..-..|+|++||.+|+|||||+|+|+|.++...+.-.+|+-|+.-
T Consensus 162 ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~------------ 229 (351)
T TIGR03156 162 RIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTR------------ 229 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEE------------
Confidence 3444444455444432211 123679999999999999999999999875433333344433211
Q ss_pred eeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHH
Q 003355 100 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIM 179 (827)
Q Consensus 100 ~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~ 179 (827)
.+..|+...+.|+||||+.+.. |.++.+.++.. .
T Consensus 230 -----------------------------------------~i~~~~~~~i~l~DT~G~~~~l----~~~lie~f~~t-l 263 (351)
T TIGR03156 230 -----------------------------------------RLDLPDGGEVLLTDTVGFIRDL----PHELVAAFRAT-L 263 (351)
T ss_pred -----------------------------------------EEEeCCCceEEEEecCcccccC----CHHHHHHHHHH-H
Confidence 1122223368999999995431 24444455554 4
Q ss_pred HHhcCCccEEEeecCCCCcccchHH---HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 180 SYIKQPSCLILAVTPANSDLANSDA---LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 180 ~yi~~~~~iIL~V~~a~~d~~~~d~---l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.++.+++ +||+|++++......+. ..+.+.+...+.++|+|+||+|+.+
T Consensus 264 e~~~~AD-lil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 264 EEVREAD-LLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHHHhCC-EEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 5677776 77777777654433221 3456666545689999999999975
No 20
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.34 E-value=2.5e-11 Score=124.35 Aligned_cols=133 Identities=18% Similarity=0.257 Sum_probs=81.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCC--CccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~--g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
+|++||.+|+|||||+|+|+|.+.+.++. ..+|+.+...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~--------------------------------------- 42 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKE--------------------------------------- 42 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCccccccee---------------------------------------
Confidence 69999999999999999999998665543 1233322100
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH--
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~-- 204 (827)
...+ ....++||||||+.+... ...++...+...+.......+ +||+|+++.. +...+.
T Consensus 43 ------------~~~~---~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~-~illVi~~~~-~t~~d~~~ 103 (196)
T cd01852 43 ------------SAVW---DGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPH-AFLLVVPLGR-FTEEEEQA 103 (196)
T ss_pred ------------eEEE---CCeEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCE-EEEEEEECCC-cCHHHHHH
Confidence 0001 112589999999987542 223444444444444444555 7778888876 555442
Q ss_pred HHHHHHhCCC--CCceEEeeecCCCCCCcccHHHhhcc
Q 003355 205 LQIAGIADPD--GYRTIGIITKLDIMDRGTDARNLLLG 240 (827)
Q Consensus 205 l~la~~~dp~--g~rtIgVlTK~D~~~~~~~~~~~l~~ 240 (827)
++..+.+-.. ..++|+|+|++|.+..+ ...+++..
T Consensus 104 l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~~~~~~ 140 (196)
T cd01852 104 VETLQELFGEKVLDHTIVLFTRGDDLEGG-TLEDYLEN 140 (196)
T ss_pred HHHHHHHhChHhHhcEEEEEECccccCCC-cHHHHHHh
Confidence 3333333211 37899999999998654 44455443
No 21
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.31 E-value=3.6e-11 Score=121.18 Aligned_cols=125 Identities=23% Similarity=0.332 Sum_probs=84.7
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCc--cccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~--~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (827)
-..|.|+|+|..++|||||+|+|+|..+.+.-+.. +|+-+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 57 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLI-------------------------------------- 57 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEE--------------------------------------
Confidence 57899999999999999999999998643321110 11111
Q ss_pred hhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCc--cEEEeecCCCCccc
Q 003355 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPS--CLILAVTPANSDLA 200 (827)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iIL~V~~a~~d~~ 200 (827)
....+ + .++.||||||+..... +.+....+..++..|++... +.+++|++++..+.
T Consensus 58 ---------------~~~~~--~--~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~ 115 (179)
T TIGR03598 58 ---------------NFFEV--N--DGFRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLK 115 (179)
T ss_pred ---------------EEEEe--C--CcEEEEeCCCCccccC---ChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCC
Confidence 00111 1 2589999999865432 22334567777778887432 46777788887776
Q ss_pred chHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 201 NSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 201 ~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
..+ ..+.+.+...+.++++|+||+|+++.
T Consensus 116 ~~~-~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 116 ELD-LEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHH-HHHHHHHHHcCCCEEEEEECcccCCH
Confidence 655 35566666678999999999999864
No 22
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.30 E-value=7.2e-11 Score=120.11 Aligned_cols=126 Identities=24% Similarity=0.341 Sum_probs=81.8
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCc--cccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~--~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (827)
-.+|.|+|+|.+++|||||+|+|+|.++.+..+.. +|+.+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~------------------------------------- 64 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLIN------------------------------------- 64 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEE-------------------------------------
Confidence 47899999999999999999999997654332221 221110
Q ss_pred hhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCc--cEEEeecCCCCccc
Q 003355 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPS--CLILAVTPANSDLA 200 (827)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iIL~V~~a~~d~~ 200 (827)
...+ ..++.||||||+.... .+.+..+.+..++..|+...+ .++++|+++.....
T Consensus 65 ----------------~~~~----~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 121 (196)
T PRK00454 65 ----------------FFEV----NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLK 121 (196)
T ss_pred ----------------EEec----CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCC
Confidence 0000 1368999999976432 223344566778888888553 24556666665544
Q ss_pred chHHHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 201 NSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 201 ~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
..+ ..+.+.+...+.++++|+||+|+.+.+
T Consensus 122 ~~~-~~i~~~l~~~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 122 ELD-LQMIEWLKEYGIPVLIVLTKADKLKKG 151 (196)
T ss_pred HHH-HHHHHHHHHcCCcEEEEEECcccCCHH
Confidence 433 244455555678899999999998643
No 23
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=8.6e-10 Score=126.37 Aligned_cols=173 Identities=23% Similarity=0.295 Sum_probs=117.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCC-ccccChHHHHHHHHHhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPG-KRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g-~~~~d~~~i~~~i~~~t~ 124 (827)
+--.|++.|+.|+||||++||++-.++||.|.|+||.|.+++. .+...+ ++...+| ..-.|...+...+.+...
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Ve--gadG~e---~vl~~~~s~ek~d~~ti~~~~haL~~ 182 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVE--GADGAE---AVLATEGSEEKIDMKTINQLAHALKP 182 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeec--ccCCcc---eeeccCCCcccccHHHHhHHHHhcCc
Confidence 3456999999999999999999999999999999999997773 222111 1222333 122333333333332221
Q ss_pred hhcCCCCcccccceEEEEecCCc------ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHV------LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD 198 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~------~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d 198 (827)
... -...--++|++|+. .++.|||.||+.-.+ .....|.++..+.+ ++++|+.|...
T Consensus 183 ~~~------~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s----------e~tswid~~cldaD-VfVlV~NaEnt 245 (749)
T KOG0448|consen 183 DKD------LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS----------ELTSWIDSFCLDAD-VFVLVVNAENT 245 (749)
T ss_pred ccc------cCcceEEEEEecCccchhhhccceeccCCCCCCch----------hhhHHHHHHhhcCC-eEEEEecCccH
Confidence 110 11233577777765 489999999997543 45567778888886 88888888888
Q ss_pred ccchHHHHHHHHhCCCCCceEEeeecCCCCCCcccHHHhhccc
Q 003355 199 LANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGK 241 (827)
Q Consensus 199 ~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~ 241 (827)
++.++ .++.+.+......++++.||||......++.+.+..+
T Consensus 246 lt~se-k~Ff~~vs~~KpniFIlnnkwDasase~ec~e~V~~Q 287 (749)
T KOG0448|consen 246 LTLSE-KQFFHKVSEEKPNIFILNNKWDASASEPECKEDVLKQ 287 (749)
T ss_pred hHHHH-HHHHHHhhccCCcEEEEechhhhhcccHHHHHHHHHH
Confidence 88777 6777777766556666678999998777776544333
No 24
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.26 E-value=1.4e-10 Score=113.19 Aligned_cols=122 Identities=29% Similarity=0.389 Sum_probs=76.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCc-cccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~-~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
-.+|+|+|.+|+|||||+|+|+|.++.+..... +|+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 42 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI---------------------------------------- 42 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceE----------------------------------------
Confidence 457999999999999999999998753222211 111100
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
. .+......++.||||||+..... .....+......++...+ ++++|+++.......+ .
T Consensus 43 -------------~-~~~~~~~~~~~liDtpG~~~~~~-----~~~~~~~~~~~~~~~~~d-~i~~v~d~~~~~~~~~-~ 101 (168)
T cd04163 43 -------------R-GIYTDDDAQIIFVDTPGIHKPKK-----KLGERMVKAAWSALKDVD-LVLFVVDASEPIGEGD-E 101 (168)
T ss_pred -------------E-EEEEcCCeEEEEEECCCCCcchH-----HHHHHHHHHHHHHHHhCC-EEEEEEECCCccCchH-H
Confidence 0 00111123689999999875431 112234455667777777 5566666665543333 3
Q ss_pred HHHHHhCCCCCceEEeeecCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+.+.+...+.+.++|+||+|+..
T Consensus 102 ~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 102 FILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred HHHHHHHHhCCCEEEEEEchhccc
Confidence 455555555789999999999984
No 25
>PRK11058 GTPase HflX; Provisional
Probab=99.26 E-value=1.4e-10 Score=132.08 Aligned_cols=126 Identities=21% Similarity=0.366 Sum_probs=81.0
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
..+|.|++||.+|||||||+|+|+|.++...+.-.+|+-|+.-
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~------------------------------------- 237 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLR------------------------------------- 237 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceE-------------------------------------
Confidence 3679999999999999999999999875422221233333111
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
.+.+ ++...+.|+||||+.+. .|.++.+.+... ..++..++ ++|+|++++........
T Consensus 238 --------------~i~l--~~~~~~~l~DTaG~~r~----lp~~lve~f~~t-l~~~~~AD-lIL~VvDaS~~~~~e~l 295 (426)
T PRK11058 238 --------------RIDV--ADVGETVLADTVGFIRH----LPHDLVAAFKAT-LQETRQAT-LLLHVVDAADVRVQENI 295 (426)
T ss_pred --------------EEEe--CCCCeEEEEecCccccc----CCHHHHHHHHHH-HHHhhcCC-EEEEEEeCCCccHHHHH
Confidence 1111 22225789999998543 134444455543 46667776 77777777654322221
Q ss_pred ---HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 ---LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 ---l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..+...+...+.++|+|+||+|+.+
T Consensus 296 ~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 296 EAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred HHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 3456666656789999999999975
No 26
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.25 E-value=1.6e-10 Score=113.89 Aligned_cols=127 Identities=24% Similarity=0.353 Sum_probs=76.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
.++|+++|..++|||||+|+|+|..+.+.+....|.... .
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~------------~---------------------------- 41 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS------------I---------------------------- 41 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc------------e----------------------------
Confidence 578999999999999999999998643322211111000 0
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
...+... ..++++|||||+.+..... ..++.........++...+ ++++|++++....... ..
T Consensus 42 ----------~~~~~~~---~~~~~iiDtpG~~~~~~~~--~~~e~~~~~~~~~~~~~~d-~vi~v~d~~~~~~~~~-~~ 104 (174)
T cd01895 42 ----------DVPFEYD---GKKYTLIDTAGIRRKGKVE--EGIEKYSVLRTLKAIERAD-VVLLVIDATEGITEQD-LR 104 (174)
T ss_pred ----------eeEEEEC---CeeEEEEECCCCccccchh--ccHHHHHHHHHHHHHhhcC-eEEEEEeCCCCcchhH-HH
Confidence 0011111 1357899999987552111 1122111112234556665 6666677776655443 45
Q ss_pred HHHHhCCCCCceEEeeecCCCCCC
Q 003355 207 IAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 207 la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+.+.+...+.+.++|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 105 IAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHHHHhcCCCEEEEEeccccCCc
Confidence 556655567999999999999865
No 27
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.25 E-value=4.3e-10 Score=129.43 Aligned_cols=145 Identities=22% Similarity=0.261 Sum_probs=85.5
Q ss_pred CchHHHHHHHHHHHHHhCCCCC-CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccce
Q 003355 23 GSVIPLVNKLQDIFAQLGSQST-IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGE 100 (827)
Q Consensus 23 ~~~~~~~~~l~d~~~~~g~~~~-~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~ 100 (827)
.++-.+.++|.++++....... -+-++|+++|.+|+|||||+|+|+|.+...++.. .+|+-+++.
T Consensus 190 ~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~------------- 256 (449)
T PRK05291 190 EKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEE------------- 256 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEE-------------
Confidence 4455566666665554432211 2447899999999999999999999864222211 112211110
Q ss_pred eecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHH
Q 003355 101 FLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMS 180 (827)
Q Consensus 101 ~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~ 180 (827)
.+.+ +...+.|+||||+.+.. ..++..--.....
T Consensus 257 --------------------------------------~i~~---~g~~i~l~DT~G~~~~~-----~~ie~~gi~~~~~ 290 (449)
T PRK05291 257 --------------------------------------HINL---DGIPLRLIDTAGIRETD-----DEVEKIGIERSRE 290 (449)
T ss_pred --------------------------------------EEEE---CCeEEEEEeCCCCCCCc-----cHHHHHHHHHHHH
Confidence 1111 11358999999986421 1222221223456
Q ss_pred HhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 181 YIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 181 yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
++...+ ++++|++++......+ ..+... ..+.++|+|+||+|+.+.
T Consensus 291 ~~~~aD-~il~VvD~s~~~s~~~-~~~l~~--~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 291 AIEEAD-LVLLVLDASEPLTEED-DEILEE--LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HHHhCC-EEEEEecCCCCCChhH-HHHHHh--cCCCCcEEEEEhhhcccc
Confidence 788777 6777777766544333 334433 346899999999999753
No 28
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.25 E-value=1.7e-10 Score=114.11 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=23.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
|.|+++|.+++|||||+|+|++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999864
No 29
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.25 E-value=9.1e-11 Score=109.54 Aligned_cols=115 Identities=26% Similarity=0.377 Sum_probs=72.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCC-CccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~-g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
+|+|+|.+|+|||||+|+|+|.+....+. ..+|+.+..- .+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~------------~~-------------------------- 42 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYG------------QF-------------------------- 42 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEE------------EE--------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeee------------ee--------------------------
Confidence 69999999999999999999976444433 3455554110 00
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l 207 (827)
.+ ....+.|+||||+...... +........+.+.+...+ ++++|+++.... +.....+
T Consensus 43 -------------~~---~~~~~~~vDtpG~~~~~~~----~~~~~~~~~~~~~~~~~d-~ii~vv~~~~~~-~~~~~~~ 100 (116)
T PF01926_consen 43 -------------EY---NNKKFILVDTPGINDGESQ----DNDGKEIRKFLEQISKSD-LIIYVVDASNPI-TEDDKNI 100 (116)
T ss_dssp -------------EE---TTEEEEEEESSSCSSSSHH----HHHHHHHHHHHHHHCTES-EEEEEEETTSHS-HHHHHHH
T ss_pred -------------ee---ceeeEEEEeCCCCcccchh----hHHHHHHHHHHHHHHHCC-EEEEEEECCCCC-CHHHHHH
Confidence 00 1125689999999764211 111112233455555555 777777776633 3333567
Q ss_pred HHHhCCCCCceEEeeec
Q 003355 208 AGIADPDGYRTIGIITK 224 (827)
Q Consensus 208 a~~~dp~g~rtIgVlTK 224 (827)
.+++. .+.++++|+||
T Consensus 101 ~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 101 LRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHH-TTSEEEEEEES
T ss_pred HHHHh-cCCCEEEEEcC
Confidence 77776 78999999998
No 30
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.24 E-value=3.6e-10 Score=129.98 Aligned_cols=126 Identities=25% Similarity=0.347 Sum_probs=82.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
+..+|+|+|..++|||||+|+|+|.+....+.. .+|+-.+..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~------------------------------------- 214 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDT------------------------------------- 214 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEE-------------------------------------
Confidence 467999999999999999999999864333221 122221111
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
.+.. +...+.||||||+.+..... ..++.........++...+ ++|+|+++......++
T Consensus 215 ----------------~~~~-~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad-~~ilViD~~~~~~~~~- 273 (435)
T PRK00093 215 ----------------PFER-DGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRTLKAIERAD-VVLLVIDATEGITEQD- 273 (435)
T ss_pred ----------------EEEE-CCeeEEEEECCCCCCCcchh--hHHHHHHHHHHHHHHHHCC-EEEEEEeCCCCCCHHH-
Confidence 1110 12358999999996543221 1222222223346777776 7777788888877776
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..++..+...+.++|+|+||+|+.+
T Consensus 274 ~~i~~~~~~~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 274 LRIAGLALEAGRALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHHHHHcCCcEEEEEECccCCC
Confidence 4677777777899999999999984
No 31
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.23 E-value=2.7e-10 Score=121.35 Aligned_cols=141 Identities=24% Similarity=0.344 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCcc
Q 003355 29 VNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (827)
Q Consensus 29 ~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~ 108 (827)
+++.++.++.+-. -+.++|+|+|.|.+|+|||||+++|++.+. .-.. .| .|+
T Consensus 151 L~~~r~~l~~LP~-Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~----YP------FTT--------------- 202 (346)
T COG1084 151 LRKARDHLKKLPA-IDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAP----YP------FTT--------------- 202 (346)
T ss_pred HHHHHHHHhcCCC-CCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCC----CC------ccc---------------
Confidence 3444444444432 356899999999999999999999999872 2111 11 111
Q ss_pred ccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccE
Q 003355 109 FYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCL 188 (827)
Q Consensus 109 ~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~i 188 (827)
+.|.+=-+.-....+.+|||||+-+-+..+ -.+|+ ..+-..|++-.++
T Consensus 203 ---------------------------K~i~vGhfe~~~~R~QvIDTPGlLDRPl~E-rN~IE----~qAi~AL~hl~~~ 250 (346)
T COG1084 203 ---------------------------KGIHVGHFERGYLRIQVIDTPGLLDRPLEE-RNEIE----RQAILALRHLAGV 250 (346)
T ss_pred ---------------------------cceeEeeeecCCceEEEecCCcccCCChHH-hcHHH----HHHHHHHHHhcCe
Confidence 111111111122358899999997665432 12333 3333344444468
Q ss_pred EEeecCCCCc----ccchHHHHHHHHhCCC-CCceEEeeecCCCCCCc
Q 003355 189 ILAVTPANSD----LANSDALQIAGIADPD-GYRTIGIITKLDIMDRG 231 (827)
Q Consensus 189 IL~V~~a~~d----~~~~d~l~la~~~dp~-g~rtIgVlTK~D~~~~~ 231 (827)
||+++|.+.. ++.| ..|..++.+. ..+++.|+||+|..+.+
T Consensus 251 IlF~~D~Se~cgy~lE~Q--~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 251 ILFLFDPSETCGYSLEEQ--ISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred EEEEEcCccccCCCHHHH--HHHHHHHHHhcCCCeEEEEecccccchh
Confidence 8888877643 3333 3455555544 36899999999999753
No 32
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.23 E-value=1.3e-09 Score=124.89 Aligned_cols=148 Identities=24% Similarity=0.240 Sum_probs=89.3
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCC-CccccceEEEEeeccCCCcccc
Q 003355 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYG 99 (827)
Q Consensus 21 ~~~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~-g~~Tr~p~~l~l~~~~~~~~~~ 99 (827)
+...+..+.+.|.++++.......-+-.+|+++|.+|+|||||+|+|++.+.-.++. ..+||-+.+.
T Consensus 177 ~~~~l~~~~~~l~~ll~~~~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~------------ 244 (442)
T TIGR00450 177 LNQLLLSIIAELKDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEG------------ 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEE------------
Confidence 444556666777777666532222355789999999999999999999975311111 1112211110
Q ss_pred eeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHH
Q 003355 100 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIM 179 (827)
Q Consensus 100 ~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~ 179 (827)
.+.+. ...+.||||||+.... ..++..--....
T Consensus 245 ---------------------------------------~i~~~---g~~v~l~DTaG~~~~~-----~~ie~~gi~~~~ 277 (442)
T TIGR00450 245 ---------------------------------------DFELN---GILIKLLDTAGIREHA-----DFVERLGIEKSF 277 (442)
T ss_pred ---------------------------------------EEEEC---CEEEEEeeCCCcccch-----hHHHHHHHHHHH
Confidence 11111 1247899999986431 112222123456
Q ss_pred HHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 180 SYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 180 ~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.|++..+ ++++|++++......+. +...+...+.++|+|+||+|+.+.
T Consensus 278 ~~~~~aD-~il~V~D~s~~~s~~~~--~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 278 KAIKQAD-LVIYVLDASQPLTKDDF--LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHhhCC-EEEEEEECCCCCChhHH--HHHHHhhCCCCEEEEEECccCCCc
Confidence 7888776 66777777655443332 444555457899999999999754
No 33
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.23 E-value=3.7e-10 Score=129.60 Aligned_cols=150 Identities=19% Similarity=0.305 Sum_probs=91.5
Q ss_pred CCchHHHHHHHHHHHHHhCCC--CCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCccc
Q 003355 22 GGSVIPLVNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEY 98 (827)
Q Consensus 22 ~~~~~~~~~~l~d~~~~~g~~--~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~ 98 (827)
+..+-.+++.+...+..-+.. ..-...+|+|+|.+++|||||+|+|+|.+....+.. .+|+.++..
T Consensus 145 g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~----------- 213 (429)
T TIGR03594 145 GRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDI----------- 213 (429)
T ss_pred CCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeE-----------
Confidence 344555666665544322211 112346899999999999999999999864322211 122221111
Q ss_pred ceeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHH
Q 003355 99 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMI 178 (827)
Q Consensus 99 ~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv 178 (827)
.+.. +...++||||||+.+..... ..++.......
T Consensus 214 ----------------------------------------~~~~---~~~~~~liDT~G~~~~~~~~--~~~e~~~~~~~ 248 (429)
T TIGR03594 214 ----------------------------------------PFER---NGKKYLLIDTAGIRRKGKVT--EGVEKYSVLRT 248 (429)
T ss_pred ----------------------------------------EEEE---CCcEEEEEECCCccccccch--hhHHHHHHHHH
Confidence 1111 11258999999996543211 12232222334
Q ss_pred HHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 179 MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 179 ~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..+++..+ ++++|+++....+.++ ..+++.+...+.+.|+|+||+|+.+
T Consensus 249 ~~~~~~ad-~~ilV~D~~~~~~~~~-~~~~~~~~~~~~~iiiv~NK~Dl~~ 297 (429)
T TIGR03594 249 LKAIERAD-VVLLVLDATEGITEQD-LRIAGLILEAGKALVIVVNKWDLVK 297 (429)
T ss_pred HHHHHhCC-EEEEEEECCCCccHHH-HHHHHHHHHcCCcEEEEEECcccCC
Confidence 56788777 6677778887777666 4677777667899999999999983
No 34
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.23 E-value=5.6e-11 Score=137.51 Aligned_cols=146 Identities=23% Similarity=0.249 Sum_probs=95.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.+|+++|++|+||||++|+|+|.+. - +
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q-~-----V----------------------------------------------- 30 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ-K-----V----------------------------------------------- 30 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc-e-----e-----------------------------------------------
Confidence 4599999999999999999999863 1 1
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc-CCccEEEeecCCCCcccchHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK-QPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~-~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
|++.|++.+..+-...... ..+.+|||||+.+..... .-+..+++|+. .+-++|+.|+||.+-..| +.
T Consensus 31 gNwpGvTVEkkeg~~~~~~-~~i~ivDLPG~YSL~~~S-------~DE~Var~~ll~~~~D~ivnVvDAtnLeRn---Ly 99 (653)
T COG0370 31 GNWPGVTVEKKEGKLKYKG-HEIEIVDLPGTYSLTAYS-------EDEKVARDFLLEGKPDLIVNVVDATNLERN---LY 99 (653)
T ss_pred cCCCCeeEEEEEEEEEecC-ceEEEEeCCCcCCCCCCC-------chHHHHHHHHhcCCCCEEEEEcccchHHHH---HH
Confidence 2222233222222222222 248999999998775432 22345678888 333799999999876666 77
Q ss_pred HHHHhCCCCCceEEeeecCCCCCCcc---cHHHhhccccccccceEEEEEcCCchhhh
Q 003355 207 IAGIADPDGYRTIGIITKLDIMDRGT---DARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 207 la~~~dp~g~rtIgVlTK~D~~~~~~---~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
+.-++-..|.++|+++|++|...+.- |..++ ...|+..-+.++.+..++++
T Consensus 100 ltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L----~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 100 LTLQLLELGIPMILALNMIDEAKKRGIRIDIEKL----SKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred HHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHH----HHHhCCCEEEEEeecCCCHH
Confidence 88888888999999999999986421 11111 11234455556666555543
No 35
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.22 E-value=2.5e-10 Score=117.31 Aligned_cols=127 Identities=22% Similarity=0.359 Sum_probs=77.7
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
-..|.|+|+|..|||||||+|+|++..+.+.+....|..+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~-------------------------------------- 80 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTT-------------------------------------- 80 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecccee--------------------------------------
Confidence 457999999999999999999999987533332222222210
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH-
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD- 203 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d- 203 (827)
..+..++...++||||||+.+.. +......+...+ .++...+ .+++|+++.......+
T Consensus 81 ---------------~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~~-~~~~~~d-~ii~v~D~~~~~~~~~~ 139 (204)
T cd01878 81 ---------------RRLRLPDGREVLLTDTVGFIRDL----PHQLVEAFRSTL-EEVAEAD-LLLHVVDASDPDYEEQI 139 (204)
T ss_pred ---------------EEEEecCCceEEEeCCCccccCC----CHHHHHHHHHHH-HHHhcCC-eEEEEEECCCCChhhHH
Confidence 01111122268999999986431 122223344433 3455565 6666667665433322
Q ss_pred --HHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 204 --ALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 204 --~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
...+.+.+...+.++++|+||+|+...
T Consensus 140 ~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 140 ETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred HHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 234555555556899999999999764
No 36
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.21 E-value=4.4e-10 Score=130.41 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=88.5
Q ss_pred CCchHHHHHHHHHHHHHh--CCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCC-CccccceEEEEeeccCCCccc
Q 003355 22 GGSVIPLVNKLQDIFAQL--GSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEY 98 (827)
Q Consensus 22 ~~~~~~~~~~l~d~~~~~--g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~-g~~Tr~p~~l~l~~~~~~~~~ 98 (827)
+..+-.+++.|.+.+... .....-..++|+|||.+|+|||||+|+|+|.++...+. ..+|+-+...
T Consensus 184 g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~----------- 252 (472)
T PRK03003 184 GRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDS----------- 252 (472)
T ss_pred CCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceE-----------
Confidence 344555555555433220 00011356899999999999999999999986432221 1222222111
Q ss_pred ceeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHH-
Q 003355 99 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTM- 177 (827)
Q Consensus 99 ~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~l- 177 (827)
.+.+. ...+.||||||+.+...... -.+....+
T Consensus 253 ----------------------------------------~~~~~---~~~~~l~DTaG~~~~~~~~~---~~e~~~~~~ 286 (472)
T PRK03003 253 ----------------------------------------LIELG---GKTWRFVDTAGLRRRVKQAS---GHEYYASLR 286 (472)
T ss_pred ----------------------------------------EEEEC---CEEEEEEECCCccccccccc---hHHHHHHHH
Confidence 11111 12468999999864321111 11223222
Q ss_pred HHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 178 IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 178 v~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
...+++..+ ++++|+++....+.++ +.++..+...+.++|+|+||+|+.+
T Consensus 287 ~~~~i~~ad-~vilV~Da~~~~s~~~-~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 287 THAAIEAAE-VAVVLIDASEPISEQD-QRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHhcCC-EEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECcccCC
Confidence 235677776 6666778877776666 4666666667899999999999985
No 37
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.21 E-value=3.1e-10 Score=131.69 Aligned_cols=124 Identities=23% Similarity=0.219 Sum_probs=83.6
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
-..|.|+|||.+|+|||||+|+|+|..+...... .+||-
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d---------------------------------------- 75 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRD---------------------------------------- 75 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEe----------------------------------------
Confidence 4679999999999999999999999764211111 11111
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d 203 (827)
.+...+... ...+.||||||+.... ..+...+...+..|+..++ +||+|+++.......+
T Consensus 76 -------------~~~~~~~~~-~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~aD-~il~VvD~~~~~s~~~ 135 (472)
T PRK03003 76 -------------RVSYDAEWN-GRRFTVVDTGGWEPDA-----KGLQASVAEQAEVAMRTAD-AVLFVVDATVGATATD 135 (472)
T ss_pred -------------eEEEEEEEC-CcEEEEEeCCCcCCcc-----hhHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHH
Confidence 111111111 1247899999986321 3355677788888999887 7777778776655444
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..++..+...+.++|+|+||+|+..
T Consensus 136 -~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 136 -EAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred -HHHHHHHHHcCCCEEEEEECccCCc
Confidence 4566666667899999999999864
No 38
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.21 E-value=2.9e-10 Score=111.34 Aligned_cols=122 Identities=22% Similarity=0.327 Sum_probs=79.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCc--cccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~--~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
.|+++|..+||||||+|+|++..+.+...+. +|+..
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~------------------------------------------ 38 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLI------------------------------------------ 38 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeE------------------------------------------
Confidence 4899999999999999999965554444332 11111
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCc--cEEEeecCCCCcccchHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPS--CLILAVTPANSDLANSDA 204 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iIL~V~~a~~d~~~~d~ 204 (827)
..+.+. ..+++|||||+..... +.+..+.+..++..|+...+ ..+++|++........+
T Consensus 39 -----------~~~~~~----~~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~- 99 (170)
T cd01876 39 -----------NFFNVN----DKFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEID- 99 (170)
T ss_pred -----------EEEEcc----CeEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhH-
Confidence 011111 1689999999865432 34455667778888887543 24566666665433322
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
..+.+.+...+.++++|+||+|++..+
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKS 126 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChH
Confidence 455666666678999999999998654
No 39
>PRK15494 era GTPase Era; Provisional
Probab=99.20 E-value=2.1e-10 Score=127.48 Aligned_cols=150 Identities=20% Similarity=0.253 Sum_probs=85.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCc-cccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~-~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..|++||.+|+|||||+|+|+|..+-.++... +||... .+
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~------------~~--------------------------- 93 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSII------------TG--------------------------- 93 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcE------------EE---------------------------
Confidence 48999999999999999999998752211111 122110 00
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
.+..+ ...+.||||||+.... ..+...+...+..++...+ ++|+|+++...+...+ ..
T Consensus 94 --------------~~~~~-~~qi~~~DTpG~~~~~-----~~l~~~~~r~~~~~l~~aD-vil~VvD~~~s~~~~~-~~ 151 (339)
T PRK15494 94 --------------IITLK-DTQVILYDTPGIFEPK-----GSLEKAMVRCAWSSLHSAD-LVLLIIDSLKSFDDIT-HN 151 (339)
T ss_pred --------------EEEeC-CeEEEEEECCCcCCCc-----ccHHHHHHHHHHHHhhhCC-EEEEEEECCCCCCHHH-HH
Confidence 01111 1258999999986431 1233344444556677776 5566667666555443 23
Q ss_pred HHHHhCCCCCceEEeeecCCCCCCcc-cHHHhhccccccccceEEEEEcCCchhh
Q 003355 207 IAGIADPDGYRTIGIITKLDIMDRGT-DARNLLLGKVIPLRLGYVGVVNRSQEDI 260 (827)
Q Consensus 207 la~~~dp~g~rtIgVlTK~D~~~~~~-~~~~~l~~~~~~l~lG~~~V~nrs~~d~ 260 (827)
++..+...+.+.|+|+||+|+.+... +..+.+... .....++.+.+.....+
T Consensus 152 il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~--~~~~~i~~iSAktg~gv 204 (339)
T PRK15494 152 ILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTEN--HPDSLLFPISALSGKNI 204 (339)
T ss_pred HHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhc--CCCcEEEEEeccCccCH
Confidence 45555445678899999999975311 122222110 01134667776665544
No 40
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.20 E-value=3.9e-10 Score=124.65 Aligned_cols=125 Identities=18% Similarity=0.231 Sum_probs=75.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
-++.|++||.+|||||||||+|++.+.-......+|+.|..-.+
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v------------------------------------ 200 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVV------------------------------------ 200 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEE------------------------------------
Confidence 35789999999999999999999875211122234555532211
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~- 204 (827)
..++...++|+||||+......+ ..+.....+++++.+ ++++|+++...-.-.+.
T Consensus 201 -----------------~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~-vlI~ViD~s~~~s~e~~~ 256 (335)
T PRK12299 201 -----------------RVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTR-LLLHLVDIEAVDPVEDYK 256 (335)
T ss_pred -----------------EeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcC-EEEEEEcCCCCCCHHHHH
Confidence 11122358999999997643221 122333445677676 66777776642222222
Q ss_pred --HHHHHHhCC--CCCceEEeeecCCCCCC
Q 003355 205 --LQIAGIADP--DGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 --l~la~~~dp--~g~rtIgVlTK~D~~~~ 230 (827)
...+..+++ ...+.|+|+||+|+.+.
T Consensus 257 ~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 257 TIRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred HHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 222333343 35899999999999753
No 41
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.19 E-value=5e-10 Score=126.25 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=73.3
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
+..|++||.+|||||||||+|++....-...-.+||.|+.-.+.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~------------------------------------ 202 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVR------------------------------------ 202 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEE------------------------------------
Confidence 45799999999999999999999863111223356655333211
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCC----Ccccch
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN----SDLANS 202 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~----~d~~~~ 202 (827)
.++...++|+||||+......+ . .....+ .+++...+ ++|+|+++. .+.. .
T Consensus 203 -----------------~~~~~~i~~vDtPGi~~~a~~~--~---~Lg~~~-l~~i~rad-vlL~VVD~s~~~~~d~~-e 257 (390)
T PRK12298 203 -----------------VDDERSFVVADIPGLIEGASEG--A---GLGIRF-LKHLERCR-VLLHLIDIAPIDGSDPV-E 257 (390)
T ss_pred -----------------eCCCcEEEEEeCCCccccccch--h---hHHHHH-HHHHHhCC-EEEEEeccCcccccChH-H
Confidence 1111248999999998643211 1 112222 35677776 666666665 1111 1
Q ss_pred HHHHHHHHhCC-----CCCceEEeeecCCCCCC
Q 003355 203 DALQIAGIADP-----DGYRTIGIITKLDIMDR 230 (827)
Q Consensus 203 d~l~la~~~dp-----~g~rtIgVlTK~D~~~~ 230 (827)
+...+.+++.. ...+.|+|+||+|+...
T Consensus 258 ~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 258 NARIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred HHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 11233333332 25899999999999753
No 42
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.18 E-value=8.2e-10 Score=134.20 Aligned_cols=151 Identities=24% Similarity=0.269 Sum_probs=91.2
Q ss_pred CCCchHHHHHHHHHHHHHhCCCC----CCCCCEEEEEccCCCCHHHHHHHHhCCCCC-ccCCCccccceEEEEeeccCCC
Q 003355 21 LGGSVIPLVNKLQDIFAQLGSQS----TIELPQVAVVGSQSSGKSSVLEALVGRDFL-PRGNDICTRRPLVLQLLQTKTD 95 (827)
Q Consensus 21 ~~~~~~~~~~~l~d~~~~~g~~~----~~~lP~IvVvG~qssGKSSlLnaL~G~~~l-P~~~g~~Tr~p~~l~l~~~~~~ 95 (827)
-+..+-.+++.|.+.+..-.... .-+.++|+++|.+|+|||||+|+|+|.++. +.....+|+-+...
T Consensus 420 ~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~-------- 491 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDE-------- 491 (712)
T ss_pred CCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCccee--------
Confidence 34556666666665442210000 125689999999999999999999998742 11112223222110
Q ss_pred cccceeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHH
Q 003355 96 EEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIR 175 (827)
Q Consensus 96 ~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~ 175 (827)
.+.+. ...++||||||+.+..... ... +...
T Consensus 492 -------------------------------------------~~~~~---~~~~~liDTaG~~~~~~~~--~~~-e~~~ 522 (712)
T PRK09518 492 -------------------------------------------IVEID---GEDWLFIDTAGIKRRQHKL--TGA-EYYS 522 (712)
T ss_pred -------------------------------------------EEEEC---CCEEEEEECCCcccCcccc--hhH-HHHH
Confidence 11111 1257899999986532211 001 1222
Q ss_pred HH-HHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 176 TM-IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 176 ~l-v~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+ ...+++..+ ++++|+++......++ ..++..+...+.++|+|+||+|+.+.
T Consensus 523 ~~r~~~~i~~ad-vvilViDat~~~s~~~-~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 523 SLRTQAAIERSE-LALFLFDASQPISEQD-LKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHHHHhhcCC-EEEEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 22 345677776 6667788887777666 46677676678999999999999863
No 43
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.18 E-value=3.5e-10 Score=120.00 Aligned_cols=131 Identities=17% Similarity=0.155 Sum_probs=80.5
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHh
Q 003355 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (827)
Q Consensus 44 ~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (827)
...-.+|+|+|..|+|||||+|+|+|.....++.- .+|+.+.....
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~--------------------------------- 74 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSG--------------------------------- 74 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEE---------------------------------
Confidence 44667999999999999999999999976555432 33433322110
Q ss_pred hhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcC-CccEEEeecCCCC-ccc
Q 003355 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQ-PSCLILAVTPANS-DLA 200 (827)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~-~~~iIL~V~~a~~-d~~ 200 (827)
. .+...++||||||+......+ .....+...+..|+.. .-++||+|...+. .+.
T Consensus 75 ------------------~---~~g~~i~vIDTPGl~~~~~~~---~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~ 130 (249)
T cd01853 75 ------------------T---VDGFKLNIIDTPGLLESVMDQ---RVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRD 130 (249)
T ss_pred ------------------E---ECCeEEEEEECCCcCcchhhH---HHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCC
Confidence 0 011358999999997653211 1334555667778872 2347777765543 233
Q ss_pred chH--HHHHHHHhCCC--CCceEEeeecCCCCCCc
Q 003355 201 NSD--ALQIAGIADPD--GYRTIGIITKLDIMDRG 231 (827)
Q Consensus 201 ~~d--~l~la~~~dp~--g~rtIgVlTK~D~~~~~ 231 (827)
..+ +++..+..-+. -.++|+|+||+|...+.
T Consensus 131 ~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 131 YLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 332 23333332211 36899999999998654
No 44
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.18 E-value=3.4e-10 Score=129.95 Aligned_cols=121 Identities=24% Similarity=0.238 Sum_probs=84.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCC-CccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~-g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.|+|||.+|+|||||+|.|+|...-.++. ..+||-...
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~----------------------------------------- 39 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKY----------------------------------------- 39 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceE-----------------------------------------
Confidence 48999999999999999999986322211 122332211
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l 207 (827)
..+... ...+.||||||+... ...+.+.+...+..+++.++ ++|+|+++...+...+ ..+
T Consensus 40 ------------~~~~~~-~~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad-~vl~vvD~~~~~~~~d-~~i 99 (429)
T TIGR03594 40 ------------GDAEWG-GREFILIDTGGIEED-----DDGLDKQIREQAEIAIEEAD-VILFVVDGREGLTPED-EEI 99 (429)
T ss_pred ------------EEEEEC-CeEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCC-EEEEEEeCCCCCCHHH-HHH
Confidence 111111 124899999998532 24466778888889999887 7777888887666555 456
Q ss_pred HHHhCCCCCceEEeeecCCCCCC
Q 003355 208 AGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 208 a~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
++.+...+.++|+|+||+|+...
T Consensus 100 ~~~l~~~~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 100 AKWLRKSGKPVILVANKIDGKKE 122 (429)
T ss_pred HHHHHHhCCCEEEEEECccCCcc
Confidence 66666678999999999999764
No 45
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.17 E-value=1.1e-10 Score=121.15 Aligned_cols=132 Identities=20% Similarity=0.304 Sum_probs=76.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCC--CccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~--g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
+|+|+|..+|||||++|+|+|.+.++.+. ..||+......-
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~------------------------------------- 44 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG------------------------------------- 44 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-------------------------------------
Confidence 69999999999999999999999887753 345544311100
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH--H
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--A 204 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d--~ 204 (827)
.+ ....+++|||||+.+.... +.++...+.+.+......++ ++|+|++.. .++..+ +
T Consensus 45 --------------~~---~g~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~h-a~llVi~~~-r~t~~~~~~ 103 (212)
T PF04548_consen 45 --------------EV---DGRQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPH-AFLLVIPLG-RFTEEDREV 103 (212)
T ss_dssp --------------EE---TTEEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ES-EEEEEEETT-B-SHHHHHH
T ss_pred --------------ee---cceEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCe-EEEEEEecC-cchHHHHHH
Confidence 00 1136899999999766432 23333444443333334556 666777777 666544 3
Q ss_pred HHHHHHhCCC--CCceEEeeecCCCCCCcccHHHhhc
Q 003355 205 LQIAGIADPD--GYRTIGIITKLDIMDRGTDARNLLL 239 (827)
Q Consensus 205 l~la~~~dp~--g~rtIgVlTK~D~~~~~~~~~~~l~ 239 (827)
++....+-+. .+++|+|+|..|...... ..+++.
T Consensus 104 l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-~~~~l~ 139 (212)
T PF04548_consen 104 LELLQEIFGEEIWKHTIVVFTHADELEDDS-LEDYLK 139 (212)
T ss_dssp HHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-HHHHHH
T ss_pred HHHHHHHccHHHHhHhhHHhhhcccccccc-HHHHHh
Confidence 4444443322 478999999999987544 444554
No 46
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.17 E-value=4.1e-10 Score=111.15 Aligned_cols=116 Identities=17% Similarity=0.237 Sum_probs=70.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
|.|+|+|..++|||||+|+|++..+.......+|+.....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~---------------------------------------- 40 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAF---------------------------------------- 40 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccE----------------------------------------
Confidence 7899999999999999999998875332222222111000
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l 207 (827)
.+....+...+++||||||.. ....+...++...+ ++++|++++..... +....
T Consensus 41 -----------~~~~~~~~~~~~~iiDtpG~~-------------~~~~~~~~~~~~~d-~il~v~d~~~~~~~-~~~~~ 94 (168)
T cd01887 41 -----------EVPAEVLKIPGITFIDTPGHE-------------AFTNMRARGASLTD-IAILVVAADDGVMP-QTIEA 94 (168)
T ss_pred -----------EEecccCCcceEEEEeCCCcH-------------HHHHHHHHHHhhcC-EEEEEEECCCCccH-HHHHH
Confidence 001100123478999999953 22334445666666 56666666654322 22333
Q ss_pred HHHhCCCCCceEEeeecCCCCC
Q 003355 208 AGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 208 a~~~dp~g~rtIgVlTK~D~~~ 229 (827)
...+...+.+.++|+||+|+.+
T Consensus 95 ~~~~~~~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 95 IKLAKAANVPFIVALNKIDKPN 116 (168)
T ss_pred HHHHHHcCCCEEEEEEceeccc
Confidence 3334445789999999999874
No 47
>COG2262 HflX GTPases [General function prediction only]
Probab=99.16 E-value=1.1e-09 Score=120.13 Aligned_cols=168 Identities=21% Similarity=0.285 Sum_probs=111.8
Q ss_pred CCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHh
Q 003355 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (827)
Q Consensus 43 ~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (827)
..-+.|+|++||..|||||||+|+|+|...+-.+.=..|=-|
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdp-------------------------------------- 229 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDP-------------------------------------- 229 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccC--------------------------------------
Confidence 346899999999999999999999999875322222222111
Q ss_pred hhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch
Q 003355 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (827)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (827)
-+-.+.-++.-.+.|-||-||++.- |..+.+.++... +-+.+++ ++|.|+|++......
T Consensus 230 ---------------ttR~~~l~~g~~vlLtDTVGFI~~L----P~~LV~AFksTL-EE~~~aD-lllhVVDaSdp~~~~ 288 (411)
T COG2262 230 ---------------TTRRIELGDGRKVLLTDTVGFIRDL----PHPLVEAFKSTL-EEVKEAD-LLLHVVDASDPEILE 288 (411)
T ss_pred ---------------ceeEEEeCCCceEEEecCccCcccC----ChHHHHHHHHHH-HHhhcCC-EEEEEeecCChhHHH
Confidence 1111222223468999999998652 567777776654 4445555 888888888663222
Q ss_pred ---HHHHHHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCchhhhhhhhHHHHHHHHHhhccC
Q 003355 203 ---DALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRS 279 (827)
Q Consensus 203 ---d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~ 279 (827)
....+..++.-...|+|.|+||+|++..... .......+ .
T Consensus 289 ~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~------------------------------------~~~~~~~~-~ 331 (411)
T COG2262 289 KLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI------------------------------------LAELERGS-P 331 (411)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEecccccCchhh------------------------------------hhhhhhcC-C
Confidence 2256778887777999999999999964320 00111112 2
Q ss_pred CCccccccccCCchHHHHHHHHHHHHH
Q 003355 280 RPVYNGLADRCGVPQLAKKLNQILVQH 306 (827)
Q Consensus 280 ~~~~~~~~~~~Gi~~L~~~L~~~L~~~ 306 (827)
.++|-+.....|++.|++.|.+.+...
T Consensus 332 ~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 332 NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 467888888999999988887766543
No 48
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.15 E-value=6.6e-10 Score=119.90 Aligned_cols=150 Identities=14% Similarity=0.253 Sum_probs=89.1
Q ss_pred HHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCC-CccccceEEEEeeccCCCcccceeecCCCcc
Q 003355 30 NKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (827)
Q Consensus 30 ~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~-g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~ 108 (827)
.+|.+++..+-. ......+|+|+|..|+||||++|+|+|.++...+. ..+|..++...
T Consensus 22 ~~l~~~l~~l~~-~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~-------------------- 80 (313)
T TIGR00991 22 TKLLELLGKLKE-EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS-------------------- 80 (313)
T ss_pred HHHHHHHHhccc-ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE--------------------
Confidence 344444444432 25778899999999999999999999987533221 12222221110
Q ss_pred ccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcC-Ccc
Q 003355 109 FYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQ-PSC 187 (827)
Q Consensus 109 ~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~-~~~ 187 (827)
..+ ....+++|||||+.+. ..+.+...+.+..|+.. .-+
T Consensus 81 -------------------------------~~~---~G~~l~VIDTPGL~d~------~~~~e~~~~~ik~~l~~~g~D 120 (313)
T TIGR00991 81 -------------------------------RTR---AGFTLNIIDTPGLIEG------GYINDQAVNIIKRFLLGKTID 120 (313)
T ss_pred -------------------------------EEE---CCeEEEEEECCCCCch------HHHHHHHHHHHHHHhhcCCCC
Confidence 000 1236899999999864 23344555667777752 234
Q ss_pred EEEeecCCCC-cccc--hHHHHHHHHhCC--CCCceEEeeecCCCCCC-cccHHHhhcc
Q 003355 188 LILAVTPANS-DLAN--SDALQIAGIADP--DGYRTIGIITKLDIMDR-GTDARNLLLG 240 (827)
Q Consensus 188 iIL~V~~a~~-d~~~--~d~l~la~~~dp--~g~rtIgVlTK~D~~~~-~~~~~~~l~~ 240 (827)
++|+|...+. .+.. ..+++..+.+-. ...++|+|+|+.|..++ +....+++..
T Consensus 121 vVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~ 179 (313)
T TIGR00991 121 VLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK 179 (313)
T ss_pred EEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh
Confidence 7777754332 2322 233444444422 24789999999999854 4455556533
No 49
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.15 E-value=5.8e-10 Score=108.43 Aligned_cols=76 Identities=24% Similarity=0.281 Sum_probs=51.0
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..+.+|||||+.... ..+.+.+...+..++...+ ++++|+++.......+ ..+.+.+...+.++++|+||+|+
T Consensus 45 ~~~~i~DtpG~~~~~-----~~~~~~~~~~~~~~~~~~d-~ii~v~d~~~~~~~~~-~~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 45 REFILIDTGGIEPDD-----EGISKEIREQAELAIEEAD-VILFVVDGREGLTPAD-EEIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred eEEEEEECCCCCCch-----hHHHHHHHHHHHHHHHhCC-EEEEEEeccccCCccH-HHHHHHHHhcCCCEEEEEECccc
Confidence 368999999997542 1344455555666777776 6666677765544333 24445554456999999999999
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
...
T Consensus 118 ~~~ 120 (157)
T cd01894 118 IKE 120 (157)
T ss_pred CCh
Confidence 864
No 50
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.14 E-value=6.4e-10 Score=110.14 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.|++||..+||||||+|+|.|...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~ 25 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP 25 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc
Confidence 489999999999999999998764
No 51
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.14 E-value=9.7e-10 Score=126.26 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=23.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
-+..|++||.+|||||||||+|++.+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~ak 183 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAK 183 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCC
Confidence 45789999999999999999999975
No 52
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.13 E-value=9.7e-10 Score=112.77 Aligned_cols=121 Identities=23% Similarity=0.304 Sum_probs=69.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.+|+|+|..|+|||||+|+|+|..+ |....+++. .+ .++. .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~-~~~~~~~~~-~~-----~~t~--~------------------------------ 42 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH-EEEGAAPTG-VV-----ETTM--K------------------------------ 42 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC-CCCCccccC-cc-----cccc--C------------------------------
Confidence 4699999999999999999999764 221111111 00 0000 0
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l 207 (827)
...+..+..+++++|||||+...... .++.++.+ -+.+.+ ++|+|.+ .++...+ ..+
T Consensus 43 -----------~~~~~~~~~~~l~l~DtpG~~~~~~~-----~~~~l~~~---~~~~~d-~~l~v~~--~~~~~~d-~~~ 99 (197)
T cd04104 43 -----------RTPYPHPKFPNVTLWDLPGIGSTAFP-----PDDYLEEM---KFSEYD-FFIIISS--TRFSSND-VKL 99 (197)
T ss_pred -----------ceeeecCCCCCceEEeCCCCCcccCC-----HHHHHHHh---CccCcC-EEEEEeC--CCCCHHH-HHH
Confidence 00011122357999999998754211 11122221 123344 6666643 3455555 455
Q ss_pred HHHhCCCCCceEEeeecCCCCCC
Q 003355 208 AGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 208 a~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
++.+...+.++++|+||+|+..+
T Consensus 100 ~~~l~~~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 100 AKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred HHHHHHhCCCEEEEEecccchhh
Confidence 65665568999999999999753
No 53
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.12 E-value=7.3e-10 Score=127.44 Aligned_cols=122 Identities=27% Similarity=0.342 Sum_probs=80.9
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCC-CccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~-g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
+|.|++||.+|+|||||+|+|+|......+. ..+|+-... +
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~------------~-------------------------- 42 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIY------------G-------------------------- 42 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceE------------E--------------------------
Confidence 3789999999999999999999986421111 111211100 0
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
.+.+.+ ..+.||||||+.... .++...++..+..++...+ ++|+|+++.......+ .
T Consensus 43 -------------~~~~~~---~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~il~vvd~~~~~~~~~-~ 99 (435)
T PRK00093 43 -------------EAEWLG---REFILIDTGGIEPDD-----DGFEKQIREQAELAIEEAD-VILFVVDGRAGLTPAD-E 99 (435)
T ss_pred -------------EEEECC---cEEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHH-H
Confidence 111111 368999999997521 2355667777888888887 6777777776555544 3
Q ss_pred HHHHHhCCCCCceEEeeecCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+++.+...+.++|+|+||+|..+
T Consensus 100 ~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 100 EIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred HHHHHHHHcCCcEEEEEECccCcc
Confidence 455555555899999999999754
No 54
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.12 E-value=3.1e-10 Score=125.46 Aligned_cols=133 Identities=24% Similarity=0.336 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCC-----CccCCCccccceEEEEeeccCCCccc
Q 003355 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF-----LPRGNDICTRRPLVLQLLQTKTDEEY 98 (827)
Q Consensus 24 ~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~-----lP~~~g~~Tr~p~~l~l~~~~~~~~~ 98 (827)
.+-..+.++++.+..+.. .. -.|+|+|+.|+|||||||||-|..- -|+|.--+|..
T Consensus 16 ~~~~~~s~i~~~l~~~~~---~~-l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~--------------- 76 (376)
T PF05049_consen 16 NLQEVVSKIREALKDIDN---AP-LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTME--------------- 76 (376)
T ss_dssp -HHHHHHHHHHHHHHHHH------EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS---------------
T ss_pred CHHHHHHHHHHHHHHhhc---Cc-eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCC---------------
Confidence 455677888888777652 22 2799999999999999999988641 01111101111
Q ss_pred ceeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHH
Q 003355 99 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMI 178 (827)
Q Consensus 99 ~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv 178 (827)
.-....|..|+++|||+||+..... ....-..++
T Consensus 77 ----------------------------------------~~~Y~~p~~pnv~lWDlPG~gt~~f-----~~~~Yl~~~- 110 (376)
T PF05049_consen 77 ----------------------------------------PTPYPHPKFPNVTLWDLPGIGTPNF-----PPEEYLKEV- 110 (376)
T ss_dssp -----------------------------------------EEEE-SS-TTEEEEEE--GGGSS-------HHHHHHHT-
T ss_pred ----------------------------------------CeeCCCCCCCCCeEEeCCCCCCCCC-----CHHHHHHHc-
Confidence 1234567889999999999965421 112122211
Q ss_pred HHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 179 MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 179 ~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
-+..-+ ++++|.+ ..+...+ ..+|+.+...|++.++|-||+|.
T Consensus 111 --~~~~yD-~fiii~s--~rf~~nd-v~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 111 --KFYRYD-FFIIISS--ERFTEND-VQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp --TGGG-S-EEEEEES--SS--HHH-HHHHHHHHHTT-EEEEEE--HHH
T ss_pred --cccccC-EEEEEeC--CCCchhh-HHHHHHHHHcCCcEEEEEecccc
Confidence 112334 4444444 4455556 58999999999999999999996
No 55
>PRK04213 GTP-binding protein; Provisional
Probab=99.11 E-value=1.7e-09 Score=110.78 Aligned_cols=125 Identities=23% Similarity=0.370 Sum_probs=75.9
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
-..++|+++|..|+|||||+|+|+|..+ +.+.. .+|+.+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~--------------------------------------- 46 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKP--------------------------------------- 46 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCc---------------------------------------
Confidence 3568999999999999999999999864 32211 111111
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc-CCc--cEEEeecCCCCccc
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK-QPS--CLILAVTPANSDLA 200 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~-~~~--~iIL~V~~a~~d~~ 200 (827)
..+.+ .+++||||||+...... +....+.++.++..|+. ..+ .++++|+++.....
T Consensus 47 --------------~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~ 105 (201)
T PRK04213 47 --------------NHYDW-----GDFILTDLPGFGFMSGV--PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIE 105 (201)
T ss_pred --------------eEEee-----cceEEEeCCcccccccc--CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccc
Confidence 11111 15899999997433211 12234567777777775 222 36667777654211
Q ss_pred c----------hHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 201 N----------SDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 201 ~----------~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
. .....+...+...+.+.++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 106 IIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred cccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 0 11123344444457899999999999753
No 56
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.11 E-value=1.3e-09 Score=120.29 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=73.6
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
-++.|++||.+|||||||||+|++..........+|+.|..-.+
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v------------------------------------ 199 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVV------------------------------------ 199 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEE------------------------------------
Confidence 35789999999999999999999875221122234555532211
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc-c--cch
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-L--ANS 202 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~--~~~ 202 (827)
++ .+...++|+||||+......+ ..+.....+++.+.+ ++|+|+++... . .-.
T Consensus 200 ---------------~~--~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad-~ll~VvD~s~~~~~~~~e 255 (329)
T TIGR02729 200 ---------------RV--DDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTR-VLLHLIDISPLDGRDPIE 255 (329)
T ss_pred ---------------Ee--CCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhC-EEEEEEcCccccccCHHH
Confidence 00 111358999999997543211 122233445566666 67777776642 1 111
Q ss_pred HHHHH---HHHhCC--CCCceEEeeecCCCCCC
Q 003355 203 DALQI---AGIADP--DGYRTIGIITKLDIMDR 230 (827)
Q Consensus 203 d~l~l---a~~~dp--~g~rtIgVlTK~D~~~~ 230 (827)
+...+ ...+.+ ...+.|+|+||+|+.+.
T Consensus 256 ~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 256 DYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred HHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 11122 233333 35899999999999754
No 57
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=6.2e-10 Score=118.94 Aligned_cols=170 Identities=16% Similarity=0.218 Sum_probs=111.6
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCcc---CCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHH
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPR---GNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQA 121 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~---~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 121 (827)
..-|.|.++|..|.||||+|+.|++.++ |. |..++|.+.+.+....+...-.-....-.+.+.|..+..+-.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~---- 130 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN---- 130 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH----
Confidence 3679999999999999999999999975 53 667788887777655443321111111122222222222221
Q ss_pred hhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccc
Q 003355 122 QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN 201 (827)
Q Consensus 122 ~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~ 201 (827)
+|-....|.....+....+++||||||-+... |.-...-.+...+..|+.+.+-|||+..+..-|++.
T Consensus 131 ----------aflnRf~csqmp~~vLe~vtiVdtPGILsgeK--QrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsd 198 (532)
T KOG1954|consen 131 ----------AFLNRFMCSQLPNQVLESVTIVDTPGILSGEK--QRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISD 198 (532)
T ss_pred ----------HHHHHHHHhcCChhhhhheeeeccCcccccch--hcccccCChHHHHHHHHHhccEEEEEechhhccccH
Confidence 22233334555666677899999999986532 222222345567778899988777777666666654
Q ss_pred hHHHHHHHHhCCCCCceEEeeecCCCCCCcc
Q 003355 202 SDALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (827)
Q Consensus 202 ~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~ 232 (827)
. ....+..+......+-+|+||.|.++..+
T Consensus 199 E-f~~vi~aLkG~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 199 E-FKRVIDALKGHEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred H-HHHHHHHhhCCcceeEEEeccccccCHHH
Confidence 3 24677788877889999999999998643
No 58
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.10 E-value=2.1e-09 Score=104.28 Aligned_cols=120 Identities=29% Similarity=0.351 Sum_probs=72.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
+|+++|..++|||||+|+|+|..+...+....|..-
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 38 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRD-------------------------------------------- 38 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccc--------------------------------------------
Confidence 699999999999999999999864222221111100
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHH
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA 208 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la 208 (827)
.....+. .....+++|||||+.... ..+....-..+..++...+ ++++|+++.......+. ++.
T Consensus 39 --------~~~~~~~-~~~~~~~i~DtpG~~~~~-----~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~-~~~ 102 (157)
T cd04164 39 --------VIEESID-IGGIPVRLIDTAGIRETE-----DEIEKIGIERAREAIEEAD-LVLFVIDASRGLDEEDL-EIL 102 (157)
T ss_pred --------eEEEEEE-eCCEEEEEEECCCcCCCc-----chHHHHHHHHHHHHHhhCC-EEEEEEECCCCCCHHHH-HHH
Confidence 0000111 012368999999986542 1122222223445666666 66667777765554443 344
Q ss_pred HHhCCCCCceEEeeecCCCCCC
Q 003355 209 GIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 209 ~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.. ..+.++|+|+||+|+.+.
T Consensus 103 ~~--~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 103 EL--PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred Hh--hcCCCEEEEEEchhcCCc
Confidence 33 346999999999999864
No 59
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.10 E-value=1.9e-09 Score=103.79 Aligned_cols=77 Identities=17% Similarity=0.287 Sum_probs=50.2
Q ss_pred cccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCC
Q 003355 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (827)
Q Consensus 147 ~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D 226 (827)
..+++||||||+....... ......+..++...+ ++++|+++......... .+.......+.+.++|+||+|
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~------~~~~~~~~~~~~~~d-~il~v~~~~~~~~~~~~-~~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLG------REREELARRVLERAD-LILFVVDADLRADEEEE-KLLELLRERGKPVLLVLNKID 115 (163)
T ss_pred CCcEEEEECCCCCccccch------hhHHHHHHHHHHhCC-EEEEEEeCCCCCCHHHH-HHHHHHHhcCCeEEEEEEccc
Confidence 3479999999987654221 111245556777776 66666666665544442 234444455799999999999
Q ss_pred CCCCc
Q 003355 227 IMDRG 231 (827)
Q Consensus 227 ~~~~~ 231 (827)
+....
T Consensus 116 ~~~~~ 120 (163)
T cd00880 116 LLPEE 120 (163)
T ss_pred cCChh
Confidence 98643
No 60
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.09 E-value=1.4e-09 Score=132.18 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=84.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
.+|.|+++|.+|+|||||+|+|+|..+..++.. .+||..
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~---------------------------------------- 313 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDR---------------------------------------- 313 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEE----------------------------------------
Confidence 458999999999999999999999764211111 112211
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
+....... ...+.||||||+.... ..+...+...+..|+...+ ++|+|+++...+...+
T Consensus 314 -------------~~~~~~~~-~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~aD-~iL~VvDa~~~~~~~d- 372 (712)
T PRK09518 314 -------------VSYDAEWA-GTDFKLVDTGGWEADV-----EGIDSAIASQAQIAVSLAD-AVVFVVDGQVGLTSTD- 372 (712)
T ss_pred -------------EEEEEEEC-CEEEEEEeCCCcCCCC-----ccHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHH-
Confidence 11111111 1258899999986421 2366677777888899887 7777888877665555
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..+++.+...+.++|+|+||+|+..
T Consensus 373 ~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 373 ERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred HHHHHHHHhcCCCEEEEEECccccc
Confidence 3566777777899999999999864
No 61
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.08 E-value=1.1e-09 Score=114.96 Aligned_cols=129 Identities=16% Similarity=0.241 Sum_probs=84.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCc-cccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~-~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.-+|+|||.+|+|||||.|.++|.++.|++... +||+- .-|
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~------------ilg-------------------------- 113 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHR------------ILG-------------------------- 113 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeee------------eeE--------------------------
Confidence 347999999999999999999999998776543 23322 111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCC--cccchH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS--DLANSD 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~--d~~~~d 203 (827)
|...+...+.|+||||+.......+-..+. .+..-.+..+..++ ++++|+|+.. ......
T Consensus 114 ----------------i~ts~eTQlvf~DTPGlvs~~~~r~~~l~~-s~lq~~~~a~q~AD-~vvVv~Das~tr~~l~p~ 175 (379)
T KOG1423|consen 114 ----------------IITSGETQLVFYDTPGLVSKKMHRRHHLMM-SVLQNPRDAAQNAD-CVVVVVDASATRTPLHPR 175 (379)
T ss_pred ----------------EEecCceEEEEecCCcccccchhhhHHHHH-HhhhCHHHHHhhCC-EEEEEEeccCCcCccChH
Confidence 112223479999999998775444322222 22223455666777 4555555552 233334
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCCCccc
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMDRGTD 233 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~~~~~ 233 (827)
.+.+.+.+. ..+.|.|+||+|...+...
T Consensus 176 vl~~l~~ys--~ips~lvmnkid~~k~k~~ 203 (379)
T KOG1423|consen 176 VLHMLEEYS--KIPSILVMNKIDKLKQKRL 203 (379)
T ss_pred HHHHHHHHh--cCCceeeccchhcchhhhH
Confidence 467777775 4789999999999976543
No 62
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.08 E-value=2.4e-09 Score=105.04 Aligned_cols=67 Identities=21% Similarity=0.358 Sum_probs=41.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch--HHHHHHHHhCCCCCceEEeeecC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--d~l~la~~~dp~g~rtIgVlTK~ 225 (827)
..+.||||||.. .....+..++...+ ++++|+++..++..+ +.+.+++... ..+.|+|+||+
T Consensus 51 ~~~~~~DtpG~~-------------~~~~~~~~~~~~ad-~ii~V~d~~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~ 114 (164)
T cd04171 51 KRLGFIDVPGHE-------------KFIKNMLAGAGGID-LVLLVVAADEGIMPQTREHLEILELLG--IKRGLVVLTKA 114 (164)
T ss_pred cEEEEEECCChH-------------HHHHHHHhhhhcCC-EEEEEEECCCCccHhHHHHHHHHHHhC--CCcEEEEEECc
Confidence 368999999952 22334456777776 666667776543322 2223333332 24899999999
Q ss_pred CCCCC
Q 003355 226 DIMDR 230 (827)
Q Consensus 226 D~~~~ 230 (827)
|+...
T Consensus 115 Dl~~~ 119 (164)
T cd04171 115 DLVDE 119 (164)
T ss_pred cccCH
Confidence 99753
No 63
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=5.9e-09 Score=116.06 Aligned_cols=129 Identities=29% Similarity=0.347 Sum_probs=85.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.-++||++|.+|+|||||||+|+..+. -+++-.| +|++
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~------GTTR------------------------------- 304 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVP------GTTR------------------------------- 304 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCC------Ccch-------------------------------
Confidence 448999999999999999999998875 2222222 3332
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
+.|...+. ++...+.|+||.|+.... + +.+++.--+..++-+.+++ +|++|++|+.....++ +
T Consensus 305 ----------Daiea~v~-~~G~~v~L~DTAGiRe~~--~--~~iE~~gI~rA~k~~~~ad-vi~~vvda~~~~t~sd-~ 367 (531)
T KOG1191|consen 305 ----------DAIEAQVT-VNGVPVRLSDTAGIREES--N--DGIEALGIERARKRIERAD-VILLVVDAEESDTESD-L 367 (531)
T ss_pred ----------hhheeEee-cCCeEEEEEecccccccc--C--ChhHHHhHHHHHHHHhhcC-EEEEEecccccccccc-h
Confidence 22333333 444578999999998722 1 2233333344566777776 8999999977666666 4
Q ss_pred HHHHHhCCC------------CCceEEeeecCCCCCCccc
Q 003355 206 QIAGIADPD------------GYRTIGIITKLDIMDRGTD 233 (827)
Q Consensus 206 ~la~~~dp~------------g~rtIgVlTK~D~~~~~~~ 233 (827)
.+++.+... ..|.|.|.||.|+..+...
T Consensus 368 ~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~ 407 (531)
T KOG1191|consen 368 KIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE 407 (531)
T ss_pred HHHHHHHHhccceEEEeccccccceEEEechhhccCcccc
Confidence 544444332 2688899999999876443
No 64
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.07 E-value=3.4e-09 Score=120.32 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=69.8
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccC--CCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRG--NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~--~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
++.|++||.+|||||||||+|++.+ |+- .-.+|+.|..-.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~------------------------------------ 199 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGV------------------------------------ 199 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEE------------------------------------
Confidence 4589999999999999999999876 331 123444442111
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc---ccc
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---LAN 201 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---~~~ 201 (827)
+.+ ++...++|+||||+....... ..+.....+++.+.+ ++++|++++.. -..
T Consensus 200 ---------------v~~--~~~~~~~laD~PGliega~~~------~gLg~~fLrhier~~-llI~VID~s~~~~~dp~ 255 (424)
T PRK12297 200 ---------------VET--DDGRSFVMADIPGLIEGASEG------VGLGHQFLRHIERTR-VIVHVIDMSGSEGRDPI 255 (424)
T ss_pred ---------------EEE--eCCceEEEEECCCCccccccc------chHHHHHHHHHhhCC-EEEEEEeCCccccCChH
Confidence 111 112358999999997532111 112222234455565 66667776431 111
Q ss_pred hHH---HHHHHHhCC--CCCceEEeeecCCCC
Q 003355 202 SDA---LQIAGIADP--DGYRTIGIITKLDIM 228 (827)
Q Consensus 202 ~d~---l~la~~~dp--~g~rtIgVlTK~D~~ 228 (827)
.+. ...+..+++ ...+.|+|+||+|+.
T Consensus 256 e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 256 EDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred HHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 121 223333443 368999999999974
No 65
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.06 E-value=2.6e-09 Score=106.20 Aligned_cols=117 Identities=17% Similarity=0.152 Sum_probs=71.3
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
+.+|+|||.+++|||||++++++..+-+....+.+....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~----------------------------------------- 42 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG----------------------------------------- 42 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE-----------------------------------------
Confidence 358999999999999999999998753332221111110
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
...+.+.+ ....+.|+||||. +....+...|++..++ +++|.+++...+-.++..
T Consensus 43 ----------~~~~~~~~-~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~-il~v~d~~~~~s~~~~~~ 97 (168)
T cd01866 43 ----------ARMITIDG-KQIKLQIWDTAGQ-------------ESFRSITRSYYRGAAG-ALLVYDITRRETFNHLTS 97 (168)
T ss_pred ----------EEEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhccCCE-EEEEEECCCHHHHHHHHH
Confidence 00111111 1125889999993 2455667788888775 555666654333333333
Q ss_pred HHHHh---CCCCCceEEeeecCCCCC
Q 003355 207 IAGIA---DPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 207 la~~~---dp~g~rtIgVlTK~D~~~ 229 (827)
+...+ ...+.+.|+|.||+|+.+
T Consensus 98 ~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 98 WLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred HHHHHHHhCCCCCcEEEEEECccccc
Confidence 33333 223688999999999974
No 66
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.06 E-value=3e-09 Score=129.10 Aligned_cols=150 Identities=22% Similarity=0.270 Sum_probs=86.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.+|+++|.+|+|||||+|+|+|.+. .++.- | |
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~-----p---------------------G--------------------- 35 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNW-----A---------------------G--------------------- 35 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCC-----C---------------------C---------------------
Confidence 5799999999999999999999864 11111 1 0
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCccEEEeecCCCCcccchHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~d~l 205 (827)
.+.+..+..+.. +...+.+|||||+.+-.....+...++. +...|+. ++ +++++|+|+.....+ +
T Consensus 36 -----vTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~---i~~~~l~~~~a-D~vI~VvDat~ler~---l 102 (772)
T PRK09554 36 -----VTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQ---IACHYILSGDA-DLLINVVDASNLERN---L 102 (772)
T ss_pred -----ceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHH---HHHHHHhccCC-CEEEEEecCCcchhh---H
Confidence 111111111111 1235899999999765322111222323 3445654 44 477788887653332 4
Q ss_pred HHHHHhCCCCCceEEeeecCCCCCCcccHH--HhhccccccccceEEEEEcCCchhhh
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~~~~~~~--~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
.+..++...+.++|+|+||+|+.++..... +-+. ..++..++.+..+..++++
T Consensus 103 ~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~---~~LG~pVvpiSA~~g~GId 157 (772)
T PRK09554 103 YLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALS---ARLGCPVIPLVSTRGRGIE 157 (772)
T ss_pred HHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHH---HHhCCCEEEEEeecCCCHH
Confidence 455666667899999999999975322111 1111 1234456666666655543
No 67
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.05 E-value=2.4e-09 Score=105.07 Aligned_cols=115 Identities=19% Similarity=0.227 Sum_probs=68.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
+|+++|..++|||||+|+|++.++.+......|......
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSK----------------------------------------- 40 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEE-----------------------------------------
Confidence 699999999999999999999886432111111111000
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHH
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA 208 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la 208 (827)
.+.+.+ ....+.|+||||. .....++..|++..+ ++++|.+.+..-+-.+...+.
T Consensus 41 ----------~~~~~~-~~~~l~~~D~~G~-------------~~~~~~~~~~~~~~~-~ii~v~d~~~~~s~~~~~~~~ 95 (161)
T cd01861 41 ----------TMYLED-KTVRLQLWDTAGQ-------------ERFRSLIPSYIRDSS-VAVVVYDITNRQSFDNTDKWI 95 (161)
T ss_pred ----------EEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhccCC-EEEEEEECcCHHHHHHHHHHH
Confidence 111110 1125889999993 244567778888887 455555655332222222222
Q ss_pred ---HHhCCCCCceEEeeecCCCCC
Q 003355 209 ---GIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 209 ---~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+...+.+.++++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 96 DDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred HHHHHhCCCCCEEEEEEEChhccc
Confidence 222233589999999999964
No 68
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.04 E-value=1.8e-09 Score=103.92 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=64.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.+|++||..+||||||+++|.|.+.-++.+.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq------------------------------------------------- 32 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQ------------------------------------------------- 32 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCccc-------------------------------------------------
Confidence 4799999999999999999999874211111
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCC-cCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGIT-KVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~-~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
.+.. .=.+|||||=. ..+ ...+.+ .....+++ +|++|.+|+.....-. -.
T Consensus 33 -----------~i~~------~~~~IDTPGEyiE~~---------~~y~aL-i~ta~dad-~V~ll~dat~~~~~~p-P~ 83 (143)
T PF10662_consen 33 -----------AIEY------YDNTIDTPGEYIENP---------RFYHAL-IVTAQDAD-VVLLLQDATEPRSVFP-PG 83 (143)
T ss_pred -----------eeEe------cccEEECChhheeCH---------HHHHHH-HHHHhhCC-EEEEEecCCCCCccCC-ch
Confidence 0000 01359999943 221 122333 23334554 8888888886543322 24
Q ss_pred HHHHhCCCCCceEEeeecCCCCCC
Q 003355 207 IAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 207 la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+++.+ ..++|||+||+|+...
T Consensus 84 fa~~f---~~pvIGVITK~Dl~~~ 104 (143)
T PF10662_consen 84 FASMF---NKPVIGVITKIDLPSD 104 (143)
T ss_pred hhccc---CCCEEEEEECccCccc
Confidence 56555 3899999999999943
No 69
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.04 E-value=2.2e-09 Score=103.89 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=68.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.+|+++|.+++|||||+|+|.+..+.+. .. .|-..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~-~t~~~------------------------------------------- 35 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YK-STIGV------------------------------------------- 35 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cC-Cceee-------------------------------------------
Confidence 3699999999999999999999876332 11 01000
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l 207 (827)
......+.+. .....+.++|+||.. .+..+...++++.+ ++++|+++...-.-..+..+
T Consensus 36 ------~~~~~~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~~~~~~~~~ 94 (159)
T cd00154 36 ------DFKSKTIEID-GKTVKLQIWDTAGQE-------------RFRSITPSYYRGAH-GAILVYDITNRESFENLDKW 94 (159)
T ss_pred ------eeEEEEEEEC-CEEEEEEEEecCChH-------------HHHHHHHHHhcCCC-EEEEEEECCCHHHHHHHHHH
Confidence 0000111111 012368899999952 44456777888877 55555555542222222223
Q ss_pred H---HHhCCCCCceEEeeecCCCC
Q 003355 208 A---GIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 208 a---~~~dp~g~rtIgVlTK~D~~ 228 (827)
. ......+.++++|+||+|+.
T Consensus 95 ~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 95 LKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHhCCCCCcEEEEEEccccc
Confidence 3 22222458999999999997
No 70
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.04 E-value=3.1e-09 Score=104.88 Aligned_cols=116 Identities=15% Similarity=0.177 Sum_probs=70.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.+|+|+|.+++|||||+++|++.++.+.....++....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~------------------------------------------ 41 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFA------------------------------------------ 41 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEE------------------------------------------
Confidence 57999999999999999999998763322211111100
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~--- 204 (827)
...+.+.+ ....+.|+||||.. ....+...|+...+.+|+ |.++.....-.+.
T Consensus 42 ---------~~~~~~~~-~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~~ 97 (165)
T cd01868 42 ---------TRSIQIDG-KTIKAQIWDTAGQE-------------RYRAITSAYYRGAVGALL-VYDITKKQTFENVERW 97 (165)
T ss_pred ---------EEEEEECC-EEEEEEEEeCCChH-------------HHHHHHHHHHCCCCEEEE-EEECcCHHHHHHHHHH
Confidence 00111111 11358899999942 445566678887764544 4454432222222
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+..++...+.+.++++|.||+|+.+
T Consensus 98 ~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 98 LKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHHHHhCCCCCeEEEEEECccccc
Confidence 2333444455689999999999875
No 71
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.04 E-value=2.7e-09 Score=107.23 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=44.5
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+ .......++...+ .+++|+++........ ..+...+...+.+.++|+||+|+
T Consensus 62 ~~~~liDtpG~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~i~iv~nK~D~ 126 (189)
T cd00881 62 RRVNFIDTPGHED-------------FSSEVIRGLSVSD-GAILVVDANEGVQPQT-REHLRIAREGGLPIIVAINKIDR 126 (189)
T ss_pred EEEEEEeCCCcHH-------------HHHHHHHHHHhcC-EEEEEEECCCCCcHHH-HHHHHHHHHCCCCeEEEEECCCC
Confidence 4799999999642 2344556777777 5555666665443322 33344444467999999999999
Q ss_pred CC
Q 003355 228 MD 229 (827)
Q Consensus 228 ~~ 229 (827)
..
T Consensus 127 ~~ 128 (189)
T cd00881 127 VG 128 (189)
T ss_pred cc
Confidence 96
No 72
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.02 E-value=4.2e-09 Score=102.70 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=43.2
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D 226 (827)
++.||||||+....... .. ..+...|+. ..+ ++++|+++..... . ..+..++...+.+.|+|+||+|
T Consensus 44 ~~~liDtpG~~~~~~~~----~~---~~~~~~~~~~~~~d-~vi~v~d~~~~~~--~-~~~~~~~~~~~~~~iiv~NK~D 112 (158)
T cd01879 44 EIEIVDLPGTYSLSPYS----ED---EKVARDFLLGEKPD-LIVNVVDATNLER--N-LYLTLQLLELGLPVVVALNMID 112 (158)
T ss_pred EEEEEECCCccccCCCC----hh---HHHHHHHhcCCCCc-EEEEEeeCCcchh--H-HHHHHHHHHcCCCEEEEEehhh
Confidence 68999999986432111 11 133445664 555 6666667654221 1 2344444445789999999999
Q ss_pred CCCC
Q 003355 227 IMDR 230 (827)
Q Consensus 227 ~~~~ 230 (827)
+.+.
T Consensus 113 l~~~ 116 (158)
T cd01879 113 EAEK 116 (158)
T ss_pred hccc
Confidence 9763
No 73
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.99 E-value=3.5e-09 Score=114.28 Aligned_cols=136 Identities=20% Similarity=0.275 Sum_probs=78.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccc-cceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT-RRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~T-r~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.|+|||..|+|||||+|+|++..+.+....... ..+ .
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~-------------~----------------------------- 43 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEH-------------I----------------------------- 43 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccc-------------c-----------------------------
Confidence 699999999999999999999987554322110 000 0
Q ss_pred CCCCcccccceEEEEecC-CcccEEEEeCCCCCcCCC-CCCchHHHHHHHHHHHHHhc--------------CCccEEEe
Q 003355 128 GGNKGVSDKQIRLKIFSP-HVLDITLVDLPGITKVPV-GEQPADIEARIRTMIMSYIK--------------QPSCLILA 191 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p-~~~~ltLVDlPGi~~~~~-~~q~~di~~~i~~lv~~yi~--------------~~~~iIL~ 191 (827)
...+........+... ....++||||||+.+... .++...+...+.+....|+. +.++++++
T Consensus 44 --~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~ 121 (276)
T cd01850 44 --DKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYF 121 (276)
T ss_pred --CCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEE
Confidence 0000011111122211 123699999999965421 22233344333343334332 23334444
Q ss_pred ecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 192 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 192 V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+.+....+...| +.+++.+.. +.++|+|+||+|++..
T Consensus 122 i~~~~~~l~~~D-~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 122 IEPTGHGLKPLD-IEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred EeCCCCCCCHHH-HHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 444445666666 677777764 6899999999999864
No 74
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.99 E-value=5.7e-09 Score=120.82 Aligned_cols=126 Identities=17% Similarity=0.244 Sum_probs=80.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCC-CccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~-g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
.+|+|||.+|+||||++|+|+|...+.++. ..+|.....+..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~------------------------------------- 161 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEG------------------------------------- 161 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEE-------------------------------------
Confidence 379999999999999999999998665543 233333211110
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcC-CccEEEeecCCCC---cccch
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQ-PSCLILAVTPANS---DLANS 202 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~-~~~iIL~V~~a~~---d~~~~ 202 (827)
.+ +...+.||||||+...... ....+.+...+..|+.. .-+++|+|..... +....
T Consensus 162 --------------~i---dG~~L~VIDTPGL~dt~~d---q~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~ 221 (763)
T TIGR00993 162 --------------LV---QGVKIRVIDTPGLKSSASD---QSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDL 221 (763)
T ss_pred --------------EE---CCceEEEEECCCCCccccc---hHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHH
Confidence 00 1125899999999876322 22344566667777773 2347777765432 22222
Q ss_pred HHHHHHHHhCCC--CCceEEeeecCCCCCC
Q 003355 203 DALQIAGIADPD--GYRTIGIITKLDIMDR 230 (827)
Q Consensus 203 d~l~la~~~dp~--g~rtIgVlTK~D~~~~ 230 (827)
.+++....+-.. ..++|+|+|++|.+.+
T Consensus 222 ~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 222 PLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 345555544433 4899999999999964
No 75
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.99 E-value=6.4e-09 Score=104.07 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=43.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..+.||||||..+ ...++..|+...+++ ++|+++......++ +.....+...+.+.|+|+||+|+
T Consensus 67 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~~-i~v~D~~~~~~~~~-~~~~~~~~~~~~~iiiv~NK~Dl 131 (179)
T cd01890 67 YLLNLIDTPGHVD-------------FSYEVSRSLAACEGA-LLLVDATQGVEAQT-LANFYLALENNLEIIPVINKIDL 131 (179)
T ss_pred EEEEEEECCCChh-------------hHHHHHHHHHhcCeE-EEEEECCCCccHhh-HHHHHHHHHcCCCEEEEEECCCC
Confidence 4688999999742 344566788888754 55556655443333 22223333356889999999998
Q ss_pred CC
Q 003355 228 MD 229 (827)
Q Consensus 228 ~~ 229 (827)
.+
T Consensus 132 ~~ 133 (179)
T cd01890 132 PS 133 (179)
T ss_pred Cc
Confidence 64
No 76
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.99 E-value=4.4e-09 Score=104.40 Aligned_cols=117 Identities=16% Similarity=0.228 Sum_probs=69.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||++++++.+|-+. ..+++... +
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~-~~~t~~~~-------------~---------------------------- 40 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS-FISTIGID-------------F---------------------------- 40 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc-cccCccce-------------E----------------------------
Confidence 36899999999999999999999876221 11110000 0
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH--
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~-- 204 (827)
....+.+.+ ....+.|+||||.. ....+...|++..++ +++|.+++...+-...
T Consensus 41 ---------~~~~~~~~~-~~~~l~l~D~~g~~-------------~~~~~~~~~~~~ad~-~i~v~d~~~~~s~~~~~~ 96 (167)
T cd01867 41 ---------KIRTIELDG-KKIKLQIWDTAGQE-------------RFRTITTAYYRGAMG-IILVYDITDEKSFENIRN 96 (167)
T ss_pred ---------EEEEEEECC-EEEEEEEEeCCchH-------------HHHHHHHHHhCCCCE-EEEEEECcCHHHHHhHHH
Confidence 000111111 11358899999932 334555678888874 4445555433222222
Q ss_pred -HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 -LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 -l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+.......+.+.++++|.||+|+.+
T Consensus 97 ~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 97 WMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHHHHHhCCCCCcEEEEEECccccc
Confidence 2223333445689999999999985
No 77
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.98 E-value=1.4e-08 Score=100.45 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=43.7
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH---HHHHHHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d---~l~la~~~dp~g~rtIgVlTK~ 225 (827)
.+.|+||||- +....+...+++..+.+++ |.++....+-.. .+.......+.+.+.|+|.||+
T Consensus 53 ~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~ll-v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 118 (165)
T cd01864 53 KLQIWDTAGQ-------------ERFRTITQSYYRSANGAII-AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKC 118 (165)
T ss_pred EEEEEECCCh-------------HHHHHHHHHHhccCCEEEE-EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 5899999992 2455667778888875555 455544322222 2333344445568899999999
Q ss_pred CCCCC
Q 003355 226 DIMDR 230 (827)
Q Consensus 226 D~~~~ 230 (827)
|+...
T Consensus 119 Dl~~~ 123 (165)
T cd01864 119 DLEEQ 123 (165)
T ss_pred ccccc
Confidence 99753
No 78
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.97 E-value=1.4e-08 Score=104.31 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=68.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
+|+|+|.+++|||||++.+++.+| +....++|...+..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~----------------------------------------- 39 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYR----------------------------------------- 39 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCccccccce-----------------------------------------
Confidence 699999999999999999998876 32222222111000
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHH
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA 208 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la 208 (827)
..+.+. .....+.|+||||...-+.. ....+......+++..+ ++++|.+++...+-..+..+.
T Consensus 40 ---------~~i~~~-~~~~~l~i~Dt~G~~~~~~~-----~~~e~~~~~~~~~~~ad-~iilv~D~~~~~S~~~~~~~~ 103 (198)
T cd04142 40 ---------PAVVLS-GRVYDLHILDVPNMQRYPGT-----AGQEWMDPRFRGLRNSR-AFILVYDICSPDSFHYVKLLR 103 (198)
T ss_pred ---------eEEEEC-CEEEEEEEEeCCCcccCCcc-----chhHHHHHHHhhhccCC-EEEEEEECCCHHHHHHHHHHH
Confidence 001111 11135789999998543211 11122233445677777 555555555432222222222
Q ss_pred H---Hh---CCCCCceEEeeecCCCCC
Q 003355 209 G---IA---DPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 209 ~---~~---dp~g~rtIgVlTK~D~~~ 229 (827)
+ .. ...+.++|+|.||+|+..
T Consensus 104 ~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 104 QQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred HHHHHhcccCCCCCCEEEEEECccccc
Confidence 2 22 245689999999999975
No 79
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.96 E-value=8.4e-09 Score=101.27 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=42.1
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhC--CCCCceEEeeecC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIAD--PDGYRTIGIITKL 225 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~d--p~g~rtIgVlTK~ 225 (827)
..+.|+||||. +....+...|++..+.++++ .++...-+-.....+...+. ..+.+.|+|+||.
T Consensus 51 ~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~v~v-~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQ-------------EEFDAITKAYYRGAQACILV-FSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKI 116 (162)
T ss_pred EEEEEeeCCch-------------HHHHHhHHHHhcCCCEEEEE-EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 36899999992 24556677888888755544 44433222222222222222 1368999999999
Q ss_pred CCCCC
Q 003355 226 DIMDR 230 (827)
Q Consensus 226 D~~~~ 230 (827)
|+...
T Consensus 117 Dl~~~ 121 (162)
T cd04106 117 DLLDQ 121 (162)
T ss_pred hcccc
Confidence 99753
No 80
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.96 E-value=1.6e-08 Score=103.04 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=43.4
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH---HHHHHHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d---~l~la~~~dp~g~rtIgVlTK~ 225 (827)
.+.||||||- .....+...|++..+ ++++|++++...+-.. .+..+....+.+.++++|+||.
T Consensus 51 ~~~i~Dt~G~-------------~~~~~~~~~~~~~ad-~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 116 (191)
T cd04112 51 KLQIWDTAGQ-------------ERFRSVTHAYYRDAH-ALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKA 116 (191)
T ss_pred EEEEEeCCCc-------------HHHHHhhHHHccCCC-EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence 5889999992 244455667888887 4555556544322111 2344455555678999999999
Q ss_pred CCCC
Q 003355 226 DIMD 229 (827)
Q Consensus 226 D~~~ 229 (827)
|+..
T Consensus 117 Dl~~ 120 (191)
T cd04112 117 DMSG 120 (191)
T ss_pred cchh
Confidence 9974
No 81
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.95 E-value=1.2e-08 Score=100.58 Aligned_cols=68 Identities=16% Similarity=0.285 Sum_probs=42.9
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH---HHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI---AGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l---a~~~dp~g~rtIgVlTK 224 (827)
..+.++||||. +....+...++...+ ++++|.+.+...+-..+..+ ..... .+.+.|+|+||
T Consensus 52 ~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK 116 (164)
T cd04101 52 VELFIFDSAGQ-------------ELYSDMVSNYWESPS-VFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNK 116 (164)
T ss_pred EEEEEEECCCH-------------HHHHHHHHHHhCCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 46899999993 355677788898887 45555555433221122222 22232 35899999999
Q ss_pred CCCCCC
Q 003355 225 LDIMDR 230 (827)
Q Consensus 225 ~D~~~~ 230 (827)
+|+.+.
T Consensus 117 ~Dl~~~ 122 (164)
T cd04101 117 MDLADK 122 (164)
T ss_pred cccccc
Confidence 999753
No 82
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.95 E-value=1.3e-08 Score=99.70 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=42.1
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---HHHHHH---hCCCCCceEEee
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGI---ADPDGYRTIGII 222 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~---l~la~~---~dp~g~rtIgVl 222 (827)
.+.|+||||.. ..+.+...|++..+ ++++|+++.....-..+ +..+.. +...+.++++|+
T Consensus 46 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 111 (162)
T cd04157 46 SFTAFDMSGQG-------------KYRGLWEHYYKNIQ-GIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFA 111 (162)
T ss_pred EEEEEECCCCH-------------hhHHHHHHHHccCC-EEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEE
Confidence 58999999953 34456667888887 45555665543221111 222211 123468999999
Q ss_pred ecCCCCCC
Q 003355 223 TKLDIMDR 230 (827)
Q Consensus 223 TK~D~~~~ 230 (827)
||.|+.+.
T Consensus 112 NK~Dl~~~ 119 (162)
T cd04157 112 NKMDLPDA 119 (162)
T ss_pred eCccccCC
Confidence 99999753
No 83
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.95 E-value=1.1e-08 Score=100.60 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=69.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
+|+|+|..++|||||++.|++..+.+......+...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 37 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEF-------------------------------------------- 37 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeE--------------------------------------------
Confidence 699999999999999999998875332221111000
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH-
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI- 207 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l- 207 (827)
....+.+. .....+.|+|+||.. ....+...|++..+.+|+ |.++....+-..+..+
T Consensus 38 -------~~~~~~~~-~~~~~l~l~D~~G~~-------------~~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~~~ 95 (161)
T cd04113 38 -------GSKIIRVG-GKRVKLQIWDTAGQE-------------RFRSVTRSYYRGAAGALL-VYDITNRTSFEALPTWL 95 (161)
T ss_pred -------EEEEEEEC-CEEEEEEEEECcchH-------------HHHHhHHHHhcCCCEEEE-EEECCCHHHHHHHHHHH
Confidence 00011111 112358899999942 344566778888875444 4555543333232223
Q ss_pred --HHHhCCCCCceEEeeecCCCCC
Q 003355 208 --AGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 208 --a~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+.+...+.+.++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 96 SDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred HHHHHhCCCCCeEEEEEEchhcch
Confidence 3334444688999999999975
No 84
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.95 E-value=1.5e-08 Score=100.09 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=41.6
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH---HHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI---AGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l---a~~~dp~g~rtIgVlTK~ 225 (827)
.+.|+||||-. ....+...|+++.+. +++|.+.+....-.+...+ .+...+ ..+.|+|+||+
T Consensus 50 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~ 114 (161)
T cd04124 50 LVDFWDTAGQE-------------RFQTMHASYYHKAHA-CILVFDVTRKITYKNLSKWYEELREYRP-EIPCIVVANKI 114 (161)
T ss_pred EEEEEeCCCch-------------hhhhhhHHHhCCCCE-EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECc
Confidence 57899999932 455677789998875 4445555443332222223 333222 58999999999
Q ss_pred CCC
Q 003355 226 DIM 228 (827)
Q Consensus 226 D~~ 228 (827)
|+.
T Consensus 115 Dl~ 117 (161)
T cd04124 115 DLD 117 (161)
T ss_pred cCc
Confidence 984
No 85
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.94 E-value=1.5e-08 Score=99.52 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=42.0
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHh---CCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA---DPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~---dp~g~rtIgVlTK~ 225 (827)
.+.|+|+||.. ....+...|+...+.+|++ .++....+-..+..+...+ ...+.++++|+||.
T Consensus 50 ~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~ilv-~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~ 115 (164)
T smart00175 50 KLQIWDTAGQE-------------RFRSITSSYYRGAVGALLV-YDITNRESFENLKNWLKELREYADPNVVIMLVGNKS 115 (164)
T ss_pred EEEEEECCChH-------------HHHHHHHHHhCCCCEEEEE-EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEch
Confidence 57899999932 3445667788888755555 4554433333332333322 22468999999999
Q ss_pred CCCC
Q 003355 226 DIMD 229 (827)
Q Consensus 226 D~~~ 229 (827)
|+..
T Consensus 116 D~~~ 119 (164)
T smart00175 116 DLED 119 (164)
T ss_pred hccc
Confidence 9875
No 86
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.94 E-value=1.3e-08 Score=100.84 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=42.2
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---HHHHHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~---l~la~~~dp~g~rtIgVlTK~ 225 (827)
.+.|+||||.. ....+...|++..+++++ |.+....-+-..+ +...+...+...+.++|.||+
T Consensus 51 ~~~l~Dt~g~~-------------~~~~~~~~~~~~~~~~l~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 116 (165)
T cd01865 51 KLQIWDTAGQE-------------RYRTITTAYYRGAMGFIL-MYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKC 116 (165)
T ss_pred EEEEEECCChH-------------HHHHHHHHHccCCcEEEE-EEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECc
Confidence 57899999942 344556678888875444 4554432222222 223333444567899999999
Q ss_pred CCCCC
Q 003355 226 DIMDR 230 (827)
Q Consensus 226 D~~~~ 230 (827)
|+.+.
T Consensus 117 Dl~~~ 121 (165)
T cd01865 117 DMEDE 121 (165)
T ss_pred ccCcc
Confidence 99753
No 87
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.94 E-value=1.7e-08 Score=100.03 Aligned_cols=115 Identities=15% Similarity=0.299 Sum_probs=67.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
+|+|+|..++|||||+++|++..+-+.....++....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~------------------------------------------- 38 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL------------------------------------------- 38 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEE-------------------------------------------
Confidence 6999999999999999999988753222111111000
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH---
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL--- 205 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l--- 205 (827)
...+.+.+ ....+.++|+||.. ....+...|+++.+++|+++ +++...+-....
T Consensus 39 --------~~~~~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~-d~~~~~~~~~~~~~~ 95 (172)
T cd01862 39 --------TKEVTVDD-KLVTLQIWDTAGQE-------------RFQSLGVAFYRGADCCVLVY-DVTNPKSFESLDSWR 95 (172)
T ss_pred --------EEEEEECC-EEEEEEEEeCCChH-------------HHHhHHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 00111111 11247899999942 23445667888887555554 444322211111
Q ss_pred -HHHHHhC---CCCCceEEeeecCCCCC
Q 003355 206 -QIAGIAD---PDGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 -~la~~~d---p~g~rtIgVlTK~D~~~ 229 (827)
.+..... +.+.++++|+||.|+..
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 96 DEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHHHhcCccCCCCceEEEEEECccccc
Confidence 2233333 33789999999999985
No 88
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.93 E-value=1e-08 Score=101.47 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=41.3
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH---HHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI---AGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l---a~~~dp~g~rtIgVlTK~ 225 (827)
.+.|+||||.. ....+...|++..+++|++ .+++..-+-.....+ .+.....+.+.|+|.||.
T Consensus 52 ~~~i~D~~G~~-------------~~~~~~~~~~~~~~~ii~v-~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~ 117 (166)
T cd01869 52 KLQIWDTAGQE-------------RFRTITSSYYRGAHGIIIV-YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 117 (166)
T ss_pred EEEEEECCCcH-------------hHHHHHHHHhCcCCEEEEE-EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 57899999932 3445666788888755555 454432222222222 333333467899999999
Q ss_pred CCCC
Q 003355 226 DIMD 229 (827)
Q Consensus 226 D~~~ 229 (827)
|+..
T Consensus 118 Dl~~ 121 (166)
T cd01869 118 DLTD 121 (166)
T ss_pred hccc
Confidence 9865
No 89
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.93 E-value=9.1e-09 Score=101.11 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP 74 (827)
+|+|+|..++|||||+|+|++.++.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~ 28 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSE 28 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 69999999999999999999998643
No 90
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.93 E-value=4.5e-09 Score=104.45 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=19.3
Q ss_pred EEccCCCCHHHHHHHHhCCCC
Q 003355 52 VVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 52 VvG~qssGKSSlLnaL~G~~~ 72 (827)
++|.+|||||||+|+|+|.++
T Consensus 1 iiG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc
Confidence 589999999999999999874
No 91
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.93 E-value=1.4e-08 Score=100.48 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=69.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
-+|+|+|..++|||||++++.+..|.+.... ++.....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~-t~~~~~~----------------------------------------- 40 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPH-TIGVEFG----------------------------------------- 40 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCc-ccceeEE-----------------------------------------
Confidence 3699999999999999999998876332111 1100000
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~--- 204 (827)
...+.+.+ ....+.|+||||. +....+...|++..+++|+++ +.+...+-...
T Consensus 41 ---------~~~~~~~~-~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~~~~ilv~-d~~~~~s~~~~~~~ 96 (166)
T cd04122 41 ---------TRIIEVNG-QKIKLQIWDTAGQ-------------ERFRAVTRSYYRGAAGALMVY-DITRRSTYNHLSSW 96 (166)
T ss_pred ---------EEEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhcCCCEEEEEE-ECCCHHHHHHHHHH
Confidence 00111111 1135789999993 245566778899887655554 44432222222
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+...+.......+.++|.||+|+...
T Consensus 97 ~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 97 LTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred HHHHHHhCCCCCeEEEEEECcccccc
Confidence 22233333345789999999999753
No 92
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.93 E-value=1.2e-08 Score=100.36 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=41.8
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH----HHHHHhCCCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL----QIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l----~la~~~dp~g~rtIgVlTK 224 (827)
.+.|+||||.. ....+...|++..+++++++ ++....+-.... .+.+.....+.++|+|+||
T Consensus 51 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~-d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK 116 (164)
T cd04145 51 ILDILDTAGQE-------------EFSAMREQYMRTGEGFLLVF-SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNK 116 (164)
T ss_pred EEEEEECCCCc-------------chhHHHHHHHhhCCEEEEEE-ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeC
Confidence 57899999953 23456667888887665555 444322211221 2233334456899999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
+|+.+
T Consensus 117 ~Dl~~ 121 (164)
T cd04145 117 ADLEH 121 (164)
T ss_pred ccccc
Confidence 99975
No 93
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.92 E-value=9.5e-09 Score=100.86 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.+|+|+|..++|||||++++++..|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~ 26 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF 26 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4799999999999999999998765
No 94
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.92 E-value=1.1e-08 Score=100.66 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=22.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|+|..++|||||+++|++..+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~ 25 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRF 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999999886
No 95
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.92 E-value=2.4e-08 Score=96.67 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=42.1
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH-HHHHh---CCCCCceEEeee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ-IAGIA---DPDGYRTIGIIT 223 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~-la~~~---dp~g~rtIgVlT 223 (827)
..+.++||||.. ..+.+...|+...+ .+++|+++.....-..+.. +...+ ...+.+.++|+|
T Consensus 44 ~~~~~~D~~g~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n 109 (159)
T cd04159 44 VTLKVWDLGGQP-------------RFRSMWERYCRGVN-AIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGN 109 (159)
T ss_pred EEEEEEECCCCH-------------hHHHHHHHHHhcCC-EEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEe
Confidence 358999999942 34556677888887 4555556554322111111 11111 124679999999
Q ss_pred cCCCCCC
Q 003355 224 KLDIMDR 230 (827)
Q Consensus 224 K~D~~~~ 230 (827)
|.|+.+.
T Consensus 110 K~D~~~~ 116 (159)
T cd04159 110 KNDLPGA 116 (159)
T ss_pred CccccCC
Confidence 9998764
No 96
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.91 E-value=1.8e-08 Score=105.62 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=49.5
Q ss_pred CcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc-CCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeec
Q 003355 146 HVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK-QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 146 ~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~-~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK 224 (827)
....++||||||.. ...+.++..... .++ ++++|+++..++..++ ..++..+...+.+.|+|+||
T Consensus 82 ~~~~i~liDtpG~~------------~~~~~~~~~~~~~~~D-~~llVvda~~g~~~~d-~~~l~~l~~~~ip~ivvvNK 147 (224)
T cd04165 82 SSKLVTFIDLAGHE------------RYLKTTLFGLTGYAPD-YAMLVVAANAGIIGMT-KEHLGLALALNIPVFVVVTK 147 (224)
T ss_pred CCcEEEEEECCCcH------------HHHHHHHHhhcccCCC-EEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEEC
Confidence 34579999999953 233444333221 344 6777888887776655 56777777778999999999
Q ss_pred CCCCCC
Q 003355 225 LDIMDR 230 (827)
Q Consensus 225 ~D~~~~ 230 (827)
+|++++
T Consensus 148 ~D~~~~ 153 (224)
T cd04165 148 IDLAPA 153 (224)
T ss_pred ccccCH
Confidence 999864
No 97
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.91 E-value=6e-09 Score=105.94 Aligned_cols=69 Identities=23% Similarity=0.356 Sum_probs=46.7
Q ss_pred CCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeec
Q 003355 145 PHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 145 p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK 224 (827)
.....++|+||||.. ..+.. +...+...+ ++++|+++..++..+. ...++.+...+.+.|+|+||
T Consensus 67 ~~~~~i~~iDtPG~~------------~f~~~-~~~~~~~~D-~ailvVda~~g~~~~~-~~~l~~~~~~~~p~ivvlNK 131 (188)
T PF00009_consen 67 ENNRKITLIDTPGHE------------DFIKE-MIRGLRQAD-IAILVVDANDGIQPQT-EEHLKILRELGIPIIVVLNK 131 (188)
T ss_dssp ESSEEEEEEEESSSH------------HHHHH-HHHHHTTSS-EEEEEEETTTBSTHHH-HHHHHHHHHTT-SEEEEEET
T ss_pred ccccceeeccccccc------------ceeec-ccceecccc-cceeeeeccccccccc-ccccccccccccceEEeeee
Confidence 445679999999953 13333 334467776 6677777877766544 45555555556889999999
Q ss_pred CCCC
Q 003355 225 LDIM 228 (827)
Q Consensus 225 ~D~~ 228 (827)
+|+.
T Consensus 132 ~D~~ 135 (188)
T PF00009_consen 132 MDLI 135 (188)
T ss_dssp CTSS
T ss_pred ccch
Confidence 9999
No 98
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.90 E-value=2.1e-08 Score=97.90 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=41.4
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---HHHHHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~---l~la~~~dp~g~rtIgVlTK~ 225 (827)
.+.++|+||-. ....+...|+...+ ++++|.+....-.-... +...+...+...++++|+||+
T Consensus 50 ~~~~~D~~g~~-------------~~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~ 115 (162)
T cd04123 50 DLAIWDTAGQE-------------RYHALGPIYYRDAD-GAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKI 115 (162)
T ss_pred EEEEEECCchH-------------HHHHhhHHHhccCC-EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence 58899999932 33455566777776 55555555443222222 222334444468999999999
Q ss_pred CCCC
Q 003355 226 DIMD 229 (827)
Q Consensus 226 D~~~ 229 (827)
|+..
T Consensus 116 D~~~ 119 (162)
T cd04123 116 DLER 119 (162)
T ss_pred cccc
Confidence 9874
No 99
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.90 E-value=1.5e-08 Score=101.66 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=42.3
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHh----CCCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~----dp~g~rtIgVlTK 224 (827)
.+.|+||||- +....+...|+++.+. +++|.++...-+-.++..+...+ ...+.++++|.||
T Consensus 64 ~~~i~Dt~G~-------------~~~~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 129 (180)
T cd04127 64 HLQLWDTAGQ-------------ERFRSLTTAFFRDAMG-FLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNK 129 (180)
T ss_pred EEEEEeCCCh-------------HHHHHHHHHHhCCCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Confidence 5789999992 3556677789998874 55555554332222222222222 1235689999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
+|+.+
T Consensus 130 ~Dl~~ 134 (180)
T cd04127 130 ADLED 134 (180)
T ss_pred ccchh
Confidence 99975
No 100
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.90 E-value=1e-08 Score=100.94 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|+|..++|||||+|+|++..+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~ 25 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF 25 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 699999999999999999998875
No 101
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.90 E-value=3.3e-08 Score=97.81 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
+|+++|..++|||||+|+|.|..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999874
No 102
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.88 E-value=4.2e-08 Score=101.18 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=45.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH---HHHHHHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d---~l~la~~~dp~g~rtIgVlTK 224 (827)
..+.|+||+|- +..+.+...|++..+++|++ .+.+..-+-.. .+...+.....+.++|+|.||
T Consensus 49 v~l~iwDtaGq-------------e~~~~l~~~y~~~ad~iIlV-fDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK 114 (202)
T cd04120 49 IRLQIWDTAGQ-------------ERFNSITSAYYRSAKGIILV-YDITKKETFDDLPKWMKMIDKYASEDAELLLVGNK 114 (202)
T ss_pred EEEEEEeCCCc-------------hhhHHHHHHHhcCCCEEEEE-EECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 46899999993 25567778899999866555 44443322222 233444444556899999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
.|+.+
T Consensus 115 ~DL~~ 119 (202)
T cd04120 115 LDCET 119 (202)
T ss_pred ccccc
Confidence 99964
No 103
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.88 E-value=5e-08 Score=96.76 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=41.7
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH----HHHHHHHhCCCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD----ALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d----~l~la~~~dp~g~rtIgVlTK 224 (827)
.+.++||||... .+.+...++...+.+ ++|.+++...+-.. ....++...+ +.++++|+||
T Consensus 48 ~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~-ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK 112 (166)
T cd01893 48 PTTIVDTSSRPQ-------------DRANLAAEIRKANVI-CLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNK 112 (166)
T ss_pred EEEEEeCCCchh-------------hhHHHhhhcccCCEE-EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 588999999542 223445677777754 55556554332222 2233444443 6899999999
Q ss_pred CCCCCC
Q 003355 225 LDIMDR 230 (827)
Q Consensus 225 ~D~~~~ 230 (827)
+|+.+.
T Consensus 113 ~Dl~~~ 118 (166)
T cd01893 113 SDLRDG 118 (166)
T ss_pred hhcccc
Confidence 999764
No 104
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.87 E-value=2.4e-08 Score=97.93 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=41.4
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccc---hHH-HHHHHHhCCCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDA-LQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~d~-l~la~~~dp~g~rtIgVlTK 224 (827)
.+.|+||||.. .+..+...+++..+++++++. ....-+- ... ..+.+.......+.++|+||
T Consensus 49 ~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK 114 (164)
T cd04139 49 QLNILDTAGQE-------------DYAAIRDNYHRSGEGFLLVFS-ITDMESFTATAEFREQILRVKDDDNVPLLLVGNK 114 (164)
T ss_pred EEEEEECCChh-------------hhhHHHHHHhhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEc
Confidence 57899999943 233455568888876666654 3321111 111 22333333457999999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
+|+.+
T Consensus 115 ~D~~~ 119 (164)
T cd04139 115 CDLED 119 (164)
T ss_pred ccccc
Confidence 99986
No 105
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.87 E-value=1.6e-08 Score=105.18 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|||+.++|||||++.|++..|
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~ 25 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF 25 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998865
No 106
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.87 E-value=1.4e-08 Score=105.14 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=47.4
Q ss_pred cccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHh
Q 003355 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA 211 (827)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~ 211 (827)
+++.+.....+.. ....+.|+||||.. ..... +..++...+ ++|+|+++...+..++ ......+
T Consensus 62 g~T~~~~~~~~~~-~~~~~~liDTpG~~------------~~~~~-~~~~~~~ad-~~llVvD~~~~~~~~~-~~~~~~~ 125 (208)
T cd04166 62 GITIDVAYRYFST-PKRKFIIADTPGHE------------QYTRN-MVTGASTAD-LAILLVDARKGVLEQT-RRHSYIL 125 (208)
T ss_pred CcCeecceeEEec-CCceEEEEECCcHH------------HHHHH-HHHhhhhCC-EEEEEEECCCCccHhH-HHHHHHH
Confidence 4454444444433 34578999999952 12222 334666666 6666677776554333 2222222
Q ss_pred CCCC-CceEEeeecCCCCCC
Q 003355 212 DPDG-YRTIGIITKLDIMDR 230 (827)
Q Consensus 212 dp~g-~rtIgVlTK~D~~~~ 230 (827)
...+ .+.|+|+||+|+...
T Consensus 126 ~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 126 SLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred HHcCCCcEEEEEEchhcccC
Confidence 2233 457889999999753
No 107
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.86 E-value=2.2e-08 Score=97.84 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=41.4
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCC-cccchH-H-HHHHHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS-DLANSD-A-LQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~-d~~~~d-~-l~la~~~dp~g~rtIgVlTK~ 225 (827)
.+.++||||.. .++.+...|++..+++++++.-.+. .+.... . ..+.+.....+.+.++|+||+
T Consensus 50 ~~~i~Dt~G~~-------------~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~ 116 (162)
T cd04138 50 LLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKC 116 (162)
T ss_pred EEEEEECCCCc-------------chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 47789999942 3456667799888765555433221 111111 1 123333344578999999999
Q ss_pred CCCC
Q 003355 226 DIMD 229 (827)
Q Consensus 226 D~~~ 229 (827)
|+..
T Consensus 117 Dl~~ 120 (162)
T cd04138 117 DLAA 120 (162)
T ss_pred cccc
Confidence 9975
No 108
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.86 E-value=2.3e-08 Score=98.68 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=41.5
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH----HHHHhCCCCCceEEeee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ----IAGIADPDGYRTIGIIT 223 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~----la~~~dp~g~rtIgVlT 223 (827)
..+.|+||||.. ....+...|++..+++|+++ +....-+-.+... +.+.....+.+.|+|.|
T Consensus 49 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~-d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (164)
T cd04175 49 CMLEILDTAGTE-------------QFTAMRDLYMKNGQGFVLVY-SITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 114 (164)
T ss_pred EEEEEEECCCcc-------------cchhHHHHHHhhCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 357899999953 33445566888888666655 3332222122222 22222345689999999
Q ss_pred cCCCCC
Q 003355 224 KLDIMD 229 (827)
Q Consensus 224 K~D~~~ 229 (827)
|+|+..
T Consensus 115 K~Dl~~ 120 (164)
T cd04175 115 KCDLED 120 (164)
T ss_pred CCcchh
Confidence 999975
No 109
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.85 E-value=2e-08 Score=96.74 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|++||++++|||||+|+|+|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 699999999999999999998753
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.85 E-value=3.3e-08 Score=98.81 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=68.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.-++|+++|..++|||||+++|++..+ +. -.+|.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~--~~~t~------------------------------------------- 46 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DT--ISPTL------------------------------------------- 46 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CC--cCCcc-------------------------------------------
Confidence 457899999999999999999998743 11 00010
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
++... .+.+. ...+.|+||||.. ..+.+...|+...+++ ++|+++.....-.+..
T Consensus 47 ------g~~~~--~~~~~---~~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~ 101 (173)
T cd04154 47 ------GFQIK--TLEYE---GYKLNIWDVGGQK-------------TLRPYWRNYFESTDAL-IWVVDSSDRLRLDDCK 101 (173)
T ss_pred ------ccceE--EEEEC---CEEEEEEECCCCH-------------HHHHHHHHHhCCCCEE-EEEEECCCHHHHHHHH
Confidence 00000 11111 2358999999942 3445667788888754 5555555432222221
Q ss_pred ----HHHHHhCCCCCceEEeeecCCCCCC
Q 003355 206 ----QIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ----~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+.+.....+.+.++|+||+|+...
T Consensus 102 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 102 RELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 1222112246899999999999753
No 111
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.85 E-value=4.7e-08 Score=99.41 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=22.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|+|..++|||||++++++..|
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~ 25 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRF 25 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCc
Confidence 699999999999999999998876
No 112
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.85 E-value=8.6e-08 Score=98.26 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=40.8
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH----HHHHHhCCCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL----QIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l----~la~~~dp~g~rtIgVlTK 224 (827)
.+.|+||||... ...+...|+...+. +++|+++....+-.++. .+.......+.++|+|+||
T Consensus 48 ~l~i~D~~G~~~-------------~~~~~~~~~~~ad~-vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 113 (198)
T cd04147 48 TLDILDTSGSYS-------------FPAMRKLSIQNSDA-FALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNK 113 (198)
T ss_pred EEEEEECCCchh-------------hhHHHHHHhhcCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEc
Confidence 588999999542 23344467887774 44555555432222221 2222223357899999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
+|+..
T Consensus 114 ~Dl~~ 118 (198)
T cd04147 114 ADSLE 118 (198)
T ss_pred ccccc
Confidence 99975
No 113
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.84 E-value=3.9e-08 Score=97.15 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=42.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHH----HHhCCCCCceEEeee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA----GIADPDGYRTIGIIT 223 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la----~~~dp~g~rtIgVlT 223 (827)
..+.|+||||.. .+..+...|+...+ ++++|+++...-.-..+.... +.....+.++++|+|
T Consensus 50 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~-~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N 115 (167)
T cd04160 50 ARLKFWDLGGQE-------------SLRSLWDKYYAECH-AIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILAN 115 (167)
T ss_pred EEEEEEECCCCh-------------hhHHHHHHHhCCCC-EEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 468999999953 23445667888887 455555554432222222222 222234689999999
Q ss_pred cCCCCCC
Q 003355 224 KLDIMDR 230 (827)
Q Consensus 224 K~D~~~~ 230 (827)
|+|+...
T Consensus 116 K~D~~~~ 122 (167)
T cd04160 116 KQDLPDA 122 (167)
T ss_pred ccccccC
Confidence 9998653
No 114
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.84 E-value=2.3e-08 Score=101.13 Aligned_cols=115 Identities=19% Similarity=0.314 Sum_probs=68.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
+|+++|..++|||||++++++..+... ..|..
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~~~---~~t~~--------------------------------------------- 36 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFVNT---VPTKG--------------------------------------------- 36 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCc---CCccc---------------------------------------------
Confidence 699999999999999999998765311 11110
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH---
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL--- 205 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l--- 205 (827)
+....+.+.+.......+.|+||||.. .++.+...|++..+ ++++|+++...-.-.++.
T Consensus 37 ----~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d-~ii~v~D~~~~~~~~~~~~~~ 98 (183)
T cd04152 37 ----FNTEKIKVSLGNSKGITFHFWDVGGQE-------------KLRPLWKSYTRCTD-GIVFVVDSVDVERMEEAKTEL 98 (183)
T ss_pred ----cceeEEEeeccCCCceEEEEEECCCcH-------------hHHHHHHHHhccCC-EEEEEEECCCHHHHHHHHHHH
Confidence 000111111111122358999999942 34556667888777 555555655432111221
Q ss_pred -HHHHHhCCCCCceEEeeecCCCCC
Q 003355 206 -QIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 -~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+.+.....+.++++|+||+|+..
T Consensus 99 ~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 99 HKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHhhhhcCCCcEEEEEECcCccc
Confidence 222333335789999999999864
No 115
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.84 E-value=5.3e-08 Score=95.58 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=41.3
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH---H-HHhCCCCCceEEeee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI---A-GIADPDGYRTIGIIT 223 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l---a-~~~dp~g~rtIgVlT 223 (827)
..+.|+|+||.. ....+...+++..+ ++++|.+.....+-.....+ . +.....+.+.++|+|
T Consensus 49 ~~~~l~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~n 114 (161)
T cd01863 49 VKLAIWDTAGQE-------------RFRTLTSSYYRGAQ-GVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGN 114 (161)
T ss_pred EEEEEEECCCch-------------hhhhhhHHHhCCCC-EEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 358999999942 23344556777776 55555555433222222222 2 223445788999999
Q ss_pred cCCCCC
Q 003355 224 KLDIMD 229 (827)
Q Consensus 224 K~D~~~ 229 (827)
|+|+..
T Consensus 115 K~D~~~ 120 (161)
T cd01863 115 KIDKEN 120 (161)
T ss_pred CCcccc
Confidence 999984
No 116
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.84 E-value=4.4e-08 Score=97.96 Aligned_cols=115 Identities=20% Similarity=0.237 Sum_probs=67.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
+|++||+.++|||||++++++..| +....+++..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~--------------------------------------------- 35 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGV--------------------------------------------- 35 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceee---------------------------------------------
Confidence 599999999999999999999875 2211111000
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHH
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA 208 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la 208 (827)
......+.+.+ ....+.|+||||.. ....+...|++..+ ++++|.+++..-+-.....+.
T Consensus 36 -----~~~~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad-~~ilv~d~~~~~s~~~~~~~~ 95 (170)
T cd04108 36 -----DFEMERFEILG-VPFSLQLWDTAGQE-------------RFKCIASTYYRGAQ-AIIIVFDLTDVASLEHTRQWL 95 (170)
T ss_pred -----EEEEEEEEECC-EEEEEEEEeCCChH-------------HHHhhHHHHhcCCC-EEEEEEECcCHHHHHHHHHHH
Confidence 00001122211 12368999999942 34556677888887 555555665421111122222
Q ss_pred H----HhCCCCCceEEeeecCCCCC
Q 003355 209 G----IADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 209 ~----~~dp~g~rtIgVlTK~D~~~ 229 (827)
. ...+...++|+|.||.|+.+
T Consensus 96 ~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 96 EDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred HHHHHhcCCCCCeEEEEEEChhcCc
Confidence 2 23344456899999999865
No 117
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.83 E-value=2.8e-08 Score=102.04 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=41.5
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHh-------CCCCCceEE
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA-------DPDGYRTIG 220 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~-------dp~g~rtIg 220 (827)
..+.|+||||-. ..+.+...|++..+++|++ .+.+...+-..+..+...+ .....++|+
T Consensus 50 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~a~~~ilv-~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piil 115 (201)
T cd04107 50 VRLQLWDIAGQE-------------RFGGMTRVYYRGAVGAIIV-FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLL 115 (201)
T ss_pred EEEEEEECCCch-------------hhhhhHHHHhCCCCEEEEE-EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEE
Confidence 358899999942 4456677899988855555 4444322222221121111 124578999
Q ss_pred eeecCCCCC
Q 003355 221 IITKLDIMD 229 (827)
Q Consensus 221 VlTK~D~~~ 229 (827)
|.||.|+.+
T Consensus 116 v~NK~Dl~~ 124 (201)
T cd04107 116 LANKCDLKK 124 (201)
T ss_pred EEECCCccc
Confidence 999999974
No 118
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.83 E-value=6.3e-08 Score=98.70 Aligned_cols=66 Identities=32% Similarity=0.445 Sum_probs=39.9
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH--HHHHHHHhCCCCCceEEeeecC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--ALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d--~l~la~~~dp~g~rtIgVlTK~ 225 (827)
..++||||||.. ..++.+ ...+...+ .+++|+++......++ .+.++.. .+.+.++|+||+
T Consensus 68 ~~~~i~DtpG~~------------~~~~~~-~~~~~~~d-~vi~VvD~~~~~~~~~~~~~~~~~~---~~~~~iiv~NK~ 130 (192)
T cd01889 68 LQITLVDCPGHA------------SLIRTI-IGGAQIID-LMLLVVDATKGIQTQTAECLVIGEI---LCKKLIVVLNKI 130 (192)
T ss_pred ceEEEEECCCcH------------HHHHHH-HHHHhhCC-EEEEEEECCCCccHHHHHHHHHHHH---cCCCEEEEEECc
Confidence 468999999962 122222 23333444 6666777776544333 2233332 367999999999
Q ss_pred CCCCC
Q 003355 226 DIMDR 230 (827)
Q Consensus 226 D~~~~ 230 (827)
|+...
T Consensus 131 Dl~~~ 135 (192)
T cd01889 131 DLIPE 135 (192)
T ss_pred ccCCH
Confidence 99853
No 119
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.83 E-value=7.9e-08 Score=99.76 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=23.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.+|+|+|+.++||||||+.|++..+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~ 27 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRF 27 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4799999999999999999998875
No 120
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.83 E-value=2.9e-08 Score=98.34 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|+|..++|||||++++++..|
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f 26 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTF 26 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999998875
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.83 E-value=4.9e-08 Score=95.68 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=41.8
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHh----CCCCCceEEeee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGIIT 223 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~----dp~g~rtIgVlT 223 (827)
..+.++||||.. ....+...|+...+ ++++|+++.....-..+......+ ...+.++++|+|
T Consensus 44 ~~l~i~D~~G~~-------------~~~~~~~~~~~~~~-~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 109 (160)
T cd04156 44 LSLTVWDVGGQE-------------KMRTVWKCYLENTD-GLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLAN 109 (160)
T ss_pred eEEEEEECCCCH-------------hHHHHHHHHhccCC-EEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 368999999953 33445556788777 555666665433222222222221 114689999999
Q ss_pred cCCCCC
Q 003355 224 KLDIMD 229 (827)
Q Consensus 224 K~D~~~ 229 (827)
|.|+.+
T Consensus 110 K~Dl~~ 115 (160)
T cd04156 110 KQDLPG 115 (160)
T ss_pred Cccccc
Confidence 999964
No 122
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.83 E-value=8.5e-08 Score=95.18 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=23.9
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~l 73 (827)
+-+|+|+|..++|||||++.+++..+-
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~ 31 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFD 31 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 457999999999999999999987763
No 123
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.83 E-value=2.3e-08 Score=102.13 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=45.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..+.||||||.. .+..++..|++..++ +++|+++........ ..+.+.+...+.+.++|+||+|+
T Consensus 65 ~~~~l~DtpG~~-------------~~~~~~~~~~~~~d~-~ilV~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~Dl 129 (194)
T cd01891 65 TKINIVDTPGHA-------------DFGGEVERVLSMVDG-VLLLVDASEGPMPQT-RFVLKKALELGLKPIVVINKIDR 129 (194)
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHHhcCE-EEEEEECCCCccHHH-HHHHHHHHHcCCCEEEEEECCCC
Confidence 468999999953 344566788888875 445556655432222 23344444457899999999999
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
.+.
T Consensus 130 ~~~ 132 (194)
T cd01891 130 PDA 132 (194)
T ss_pred CCC
Confidence 753
No 124
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.83 E-value=2.8e-08 Score=101.95 Aligned_cols=117 Identities=20% Similarity=0.204 Sum_probs=68.1
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|||..++|||||++.+.+..|-+ .. .+|-.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~-~~t~~------------------------------------------- 40 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SY-ITTIG------------------------------------------- 40 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-Cc-Ccccc-------------------------------------------
Confidence 5689999999999999999999886521 11 11100
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
++.....+.+.+ ....+.|+||||-. ....+...|+...+++ ++|.++....+-.++..
T Consensus 41 ------~~~~~~~~~~~~-~~~~l~l~D~~G~~-------------~~~~~~~~~~~~a~~i-ilv~D~~~~~s~~~~~~ 99 (199)
T cd04110 41 ------VDFKIRTVEING-ERVKLQIWDTAGQE-------------RFRTITSTYYRGTHGV-IVVYDVTNGESFVNVKR 99 (199)
T ss_pred ------ceeEEEEEEECC-EEEEEEEEeCCCch-------------hHHHHHHHHhCCCcEE-EEEEECCCHHHHHHHHH
Confidence 000001111111 11357899999932 3455667788888754 44555543322222222
Q ss_pred HHHHhC--CCCCceEEeeecCCCCC
Q 003355 207 IAGIAD--PDGYRTIGIITKLDIMD 229 (827)
Q Consensus 207 la~~~d--p~g~rtIgVlTK~D~~~ 229 (827)
+...+. ....+.++|.||+|+.+
T Consensus 100 ~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 100 WLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred HHHHHHHhCCCCCEEEEEECccccc
Confidence 333222 12478899999999875
No 125
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.82 E-value=5.2e-08 Score=96.42 Aligned_cols=117 Identities=18% Similarity=0.257 Sum_probs=69.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCcc-ccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC-TRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~-Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
.+++|+|+|..++|||||++++++..+.+. .++. +.....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~-------------------------------------- 46 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDFMI-------------------------------------- 46 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeEEEE--------------------------------------
Confidence 458899999999999999999997655322 1111 100000
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch--
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS-- 202 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~-- 202 (827)
..+.+. .....+.++|+||.. ....+...|+...++++++ .+.....+-.
T Consensus 47 -------------~~~~~~-~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~ 98 (169)
T cd04114 47 -------------KTVEIK-GEKIKLQIWDTAGQE-------------RFRSITQSYYRSANALILT-YDITCEESFRCL 98 (169)
T ss_pred -------------EEEEEC-CEEEEEEEEECCCcH-------------HHHHHHHHHhcCCCEEEEE-EECcCHHHHHHH
Confidence 011111 111257899999942 3344556788888755444 4544322211
Q ss_pred -HHHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 203 -DALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 203 -d~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..+...+.+...+.+.|+|.||.|+.+
T Consensus 99 ~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 99 PEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred HHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 223334555555688899999999865
No 126
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.82 E-value=2e-08 Score=98.88 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+++|.+++|||||++.+++..+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~ 26 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTF 26 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 699999999999999999998776
No 127
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.81 E-value=5.3e-08 Score=99.09 Aligned_cols=67 Identities=12% Similarity=0.080 Sum_probs=40.6
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---HHHHHHhC---CCCCceEEee
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIAD---PDGYRTIGII 222 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~---l~la~~~d---p~g~rtIgVl 222 (827)
.+.|+||||.. ....+...|++..+++|++ .+.+...+-..+ +.....+. +...++|+|.
T Consensus 48 ~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~ilv-~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvg 113 (190)
T cd04144 48 MLEVLDTAGQE-------------EYTALRDQWIREGEGFILV-YSITSRSTFERVERFREQIQRVKDESAADVPIMIVG 113 (190)
T ss_pred EEEEEECCCch-------------hhHHHHHHHHHhCCEEEEE-EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 58899999942 3344556788888755544 444432221222 22233332 2467899999
Q ss_pred ecCCCCC
Q 003355 223 TKLDIMD 229 (827)
Q Consensus 223 TK~D~~~ 229 (827)
||+|+.+
T Consensus 114 NK~Dl~~ 120 (190)
T cd04144 114 NKCDKVY 120 (190)
T ss_pred EChhccc
Confidence 9999974
No 128
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.80 E-value=5.9e-08 Score=94.54 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=66.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
+|+|+|..++|||||+++|++..+ +.....++......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~~----------------------------------------- 38 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYRK----------------------------------------- 38 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeEEE-----------------------------------------
Confidence 489999999999999999998863 33322222211000
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---H
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~---l 205 (827)
.+.+. .....+.++|+||.. ....+...++...+.+|+ |.+........++ .
T Consensus 39 ----------~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~~~ 93 (160)
T cd00876 39 ----------TIVVD-GETYTLDILDTAGQE-------------EFSAMRDLYIRQGDGFIL-VYSITDRESFEEIKGYR 93 (160)
T ss_pred ----------EEEEC-CEEEEEEEEECCChH-------------HHHHHHHHHHhcCCEEEE-EEECCCHHHHHHHHHHH
Confidence 01110 012357899999943 234455567777775555 4444332222222 2
Q ss_pred HHHHHhCC-CCCceEEeeecCCCCC
Q 003355 206 QIAGIADP-DGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 ~la~~~dp-~g~rtIgVlTK~D~~~ 229 (827)
.......+ .+.++++|+||+|+..
T Consensus 94 ~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 94 EQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHhcCCCCCcEEEEEECCcccc
Confidence 22222222 5799999999999986
No 129
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.79 E-value=3.9e-08 Score=116.14 Aligned_cols=134 Identities=17% Similarity=0.212 Sum_probs=78.1
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
+..|.|+|+|..++|||||||+|.|..+.....|..|+-.-....... . ..+
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~-----~-----~~~------------------ 53 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMD-----V-----IEG------------------ 53 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeec-----c-----ccc------------------
Confidence 457999999999999999999999987754444444442100000000 0 000
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
..+ ...-..++.. ..+.++||||||.. .+..+...++...+ ++++|+++..+...+.
T Consensus 54 -~~~------~~~~~~~v~~-~~~~l~~iDTpG~e-------------~f~~l~~~~~~~aD-~~IlVvD~~~g~~~qt- 110 (590)
T TIGR00491 54 -ICG------DLLKKFKIRL-KIPGLLFIDTPGHE-------------AFTNLRKRGGALAD-LAILIVDINEGFKPQT- 110 (590)
T ss_pred -ccc------cccccccccc-ccCcEEEEECCCcH-------------hHHHHHHHHHhhCC-EEEEEEECCcCCCHhH-
Confidence 000 0000001111 12359999999942 33445556777776 5666667766554433
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+..+..+...+.+.|+|+||+|+.+
T Consensus 111 ~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 111 QEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHHcCCCEEEEEECCCccc
Confidence 3444444445789999999999985
No 130
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.79 E-value=7.5e-08 Score=94.25 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=42.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH----HHHHHHhCCCCCceEEeee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA----LQIAGIADPDGYRTIGIIT 223 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~----l~la~~~dp~g~rtIgVlT 223 (827)
..+.++||||.. ....+...++...++ +++|.++...-.-..+ ..+.+.....+.++++|+|
T Consensus 43 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~-~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd00878 43 VSFTVWDVGGQD-------------KIRPLWKHYYENTNG-IIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFAN 108 (158)
T ss_pred EEEEEEECCCCh-------------hhHHHHHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEee
Confidence 368999999953 223455667787764 4445555543111112 2233333345789999999
Q ss_pred cCCCCCC
Q 003355 224 KLDIMDR 230 (827)
Q Consensus 224 K~D~~~~ 230 (827)
|+|+...
T Consensus 109 K~D~~~~ 115 (158)
T cd00878 109 KQDLPGA 115 (158)
T ss_pred ccCCccc
Confidence 9999863
No 131
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.79 E-value=1.3e-07 Score=95.52 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.|+|+|..++|||||+++|++..+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~ 25 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF 25 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC
Confidence 699999999999999999998875
No 132
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.79 E-value=3.2e-08 Score=106.56 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=53.8
Q ss_pred cccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHh
Q 003355 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA 211 (827)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~ 211 (827)
++|-+.....+.+. ...++||||||..+ +...+..++...+ .+++|+++...+..++ ..+++.+
T Consensus 49 giti~~~~~~~~~~-~~~i~liDTPG~~d-------------f~~~~~~~l~~aD-~ailVVDa~~g~~~~t-~~~~~~~ 112 (270)
T cd01886 49 GITIQSAATTCFWK-DHRINIIDTPGHVD-------------FTIEVERSLRVLD-GAVAVFDAVAGVEPQT-ETVWRQA 112 (270)
T ss_pred CcCeeccEEEEEEC-CEEEEEEECCCcHH-------------HHHHHHHHHHHcC-EEEEEEECCCCCCHHH-HHHHHHH
Confidence 44444444444443 34789999999642 1223556777776 5556677777665544 4566666
Q ss_pred CCCCCceEEeeecCCCCC
Q 003355 212 DPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 212 dp~g~rtIgVlTK~D~~~ 229 (827)
...+.+.|+|+||+|+..
T Consensus 113 ~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 113 DRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHcCCCEEEEEECCCCCC
Confidence 666799999999999975
No 133
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.78 E-value=8.5e-08 Score=95.51 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=41.5
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHH-HHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHh----CCCCCceEEee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIR-TMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGII 222 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~-~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~----dp~g~rtIgVl 222 (827)
..+.|+||||.. ..+ .+...|++..+++|++ .+.....+-..+..+...+ .....++|+|.
T Consensus 51 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~ 116 (170)
T cd04115 51 IKVQLWDTAGQE-------------RFRKSMVQHYYRNVHAVVFV-YDVTNMASFHSLPSWIEECEQHSLPNEVPRILVG 116 (170)
T ss_pred EEEEEEeCCChH-------------HHHHhhHHHhhcCCCEEEEE-EECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEE
Confidence 368899999932 222 3566788888866555 4444332222222333222 23458999999
Q ss_pred ecCCCCC
Q 003355 223 TKLDIMD 229 (827)
Q Consensus 223 TK~D~~~ 229 (827)
||+|+..
T Consensus 117 nK~Dl~~ 123 (170)
T cd04115 117 NKCDLRE 123 (170)
T ss_pred ECccchh
Confidence 9999875
No 134
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.76 E-value=6.6e-08 Score=96.30 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=44.1
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHh----CCCCCceEEeee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGIIT 223 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~----dp~g~rtIgVlT 223 (827)
..+.++|+||-. ..+.+...|++..+.+|+ |+++...-.-.++......+ ...+.+.++|+|
T Consensus 43 ~~~~i~D~~G~~-------------~~~~~~~~~~~~a~~ii~-V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~N 108 (167)
T cd04161 43 YEVCIFDLGGGA-------------NFRGIWVNYYAEAHGLVF-VVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLAN 108 (167)
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHcCCCEEEE-EEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence 468999999932 455667789998885555 45554432222222233322 224689999999
Q ss_pred cCCCCCC
Q 003355 224 KLDIMDR 230 (827)
Q Consensus 224 K~D~~~~ 230 (827)
|.|+.+.
T Consensus 109 K~Dl~~~ 115 (167)
T cd04161 109 KQDKKNA 115 (167)
T ss_pred CCCCcCC
Confidence 9999754
No 135
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.76 E-value=6.9e-08 Score=97.80 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=67.6
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.-++|+++|..+|||||+++.|+|..+.. ..+|..|...
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~-------------------------------------- 54 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSE-------------------------------------- 54 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceE--------------------------------------
Confidence 34889999999999999999999876421 1122222110
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
.+.+ ....+.++||||.. ..+.+...|+...+.+|+ |+++...-.-..+.
T Consensus 55 -------------~~~~---~~~~~~~~D~~G~~-------------~~~~~~~~~~~~ad~ii~-vvD~~~~~~~~~~~ 104 (184)
T smart00178 55 -------------ELAI---GNIKFTTFDLGGHQ-------------QARRLWKDYFPEVNGIVY-LVDAYDKERFAESK 104 (184)
T ss_pred -------------EEEE---CCEEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEE-EEECCcHHHHHHHH
Confidence 0111 11357899999953 234555678888875555 45554321111111
Q ss_pred ----HHHHHhCCCCCceEEeeecCCCCC
Q 003355 206 ----QIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 ----~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+.+...-.+.++++|+||.|+..
T Consensus 105 ~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 105 RELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 122211224689999999999863
No 136
>PTZ00369 Ras-like protein; Provisional
Probab=98.76 E-value=1.5e-07 Score=95.78 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.5
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
-..|+|+|..++|||||++++++..|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~ 30 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF 30 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999998765
No 137
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.75 E-value=1.5e-07 Score=95.34 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=28.5
Q ss_pred HHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 36 FAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 36 ~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+..+|. ...-.+|+++|..+||||||+++|.+..+
T Consensus 10 ~~~~~~--~~~~~ki~ilG~~~~GKStLi~~l~~~~~ 44 (190)
T cd00879 10 LSSLGL--YNKEAKILFLGLDNAGKTTLLHMLKDDRL 44 (190)
T ss_pred HHHhhc--ccCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 444554 34678999999999999999999998764
No 138
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.75 E-value=1.3e-07 Score=92.89 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=41.7
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch----HHHHHHHHhCCCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS----DALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~----d~l~la~~~dp~g~rtIgVlTK 224 (827)
.+.|+||||.. ..+.+...|+...+.+ ++|+++.....-. ....+.+.....+.++++|+||
T Consensus 44 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~i-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd04151 44 KFQVWDLGGQT-------------SIRPYWRCYYSNTDAI-IYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANK 109 (158)
T ss_pred EEEEEECCCCH-------------HHHHHHHHHhcCCCEE-EEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeC
Confidence 58899999953 2345666788888754 5555554422111 1112223222246899999999
Q ss_pred CCCCCC
Q 003355 225 LDIMDR 230 (827)
Q Consensus 225 ~D~~~~ 230 (827)
+|+.+.
T Consensus 110 ~Dl~~~ 115 (158)
T cd04151 110 QDMPGA 115 (158)
T ss_pred CCCCCC
Confidence 999753
No 139
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=9.8e-08 Score=94.68 Aligned_cols=121 Identities=20% Similarity=0.267 Sum_probs=74.5
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
+..-.|||+|+||+||+|||+.++-..| -+ .|...
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~f-d~---------------------~YqAT----------------------- 54 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKF-DN---------------------TYQAT----------------------- 54 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhh-cc---------------------cccce-----------------------
Confidence 4446899999999999999999986655 11 11111
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
.|++..--++.+.+. ...|.||||.| ++.++.++-.|+++... ++.|-+.+.--+-...
T Consensus 55 ------IGiDFlskt~~l~d~-~vrLQlWDTAG-------------QERFrslipsY~Rds~v-aviVyDit~~~Sfe~t 113 (221)
T KOG0094|consen 55 ------IGIDFLSKTMYLEDR-TVRLQLWDTAG-------------QERFRSLIPSYIRDSSV-AVIVYDITDRNSFENT 113 (221)
T ss_pred ------eeeEEEEEEEEEcCc-EEEEEEEeccc-------------HHHHhhhhhhhccCCeE-EEEEEeccccchHHHH
Confidence 111111112233222 34689999999 57999999999998874 4444443322222222
Q ss_pred HHHHHHhC---C-CCCceEEeeecCCCCCCc
Q 003355 205 LQIAGIAD---P-DGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 205 l~la~~~d---p-~g~rtIgVlTK~D~~~~~ 231 (827)
-+++..+. . .+..+++|-||.||.++.
T Consensus 114 ~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr 144 (221)
T KOG0094|consen 114 SKWIEDVRRERGSDDVIIFLVGNKTDLSDKR 144 (221)
T ss_pred HHHHHHHHhccCCCceEEEEEcccccccchh
Confidence 23333332 2 245677888999999863
No 140
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.75 E-value=7.5e-08 Score=95.65 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+++|.++|||||+++++++..+
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~ 26 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF 26 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 599999999999999999998775
No 141
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.75 E-value=1.2e-07 Score=101.92 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=74.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
-.|+|+|..++|||||+|+|+... |...|... +. . .. ..|....|+.....
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~------g~i~~~g~-v~--~----~~------~~~~t~~D~~~~e~---------- 53 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFG------GAIREAGA-VK--A----RK------SRKHATSDWMEIEK---------- 53 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhc------CCcccCce-ec--c----cc------cCCCccCCCcHHHH----------
Confidence 469999999999999999998642 11111110 00 0 00 00111223321111
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l 207 (827)
..+++-..-...+.+. ...+.||||||..+ +...+..+++..+++ ++|+++...+..+. ..+
T Consensus 54 --~rg~si~~~~~~~~~~-~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~-IlVvda~~g~~~~~-~~i 115 (267)
T cd04169 54 --QRGISVTSSVMQFEYR-DCVINLLDTPGHED-------------FSEDTYRTLTAVDSA-VMVIDAAKGVEPQT-RKL 115 (267)
T ss_pred --hCCCCeEEEEEEEeeC-CEEEEEEECCCchH-------------HHHHHHHHHHHCCEE-EEEEECCCCccHHH-HHH
Confidence 0122322222233332 35789999999642 223345677777745 55566665554332 344
Q ss_pred HHHhCCCCCceEEeeecCCCCCC
Q 003355 208 AGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 208 a~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+.....+.++++|+||+|+...
T Consensus 116 ~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 116 FEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHhcCCCEEEEEECCccCCC
Confidence 55555567899999999998654
No 142
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.74 E-value=2.3e-07 Score=97.77 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
+|+++|.+|+|||||+|+|+|..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~ 24 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK 24 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999986
No 143
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.74 E-value=6.3e-08 Score=102.32 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=45.2
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+ +...+..+++..+. +++|+++......+. ..+.+.+...+.+.|+|+||+|+
T Consensus 64 ~~i~liDTPG~~~-------------f~~~~~~~l~~aD~-~IlVvd~~~g~~~~~-~~~~~~~~~~~~P~iivvNK~D~ 128 (237)
T cd04168 64 TKVNLIDTPGHMD-------------FIAEVERSLSVLDG-AILVISAVEGVQAQT-RILWRLLRKLNIPTIIFVNKIDR 128 (237)
T ss_pred EEEEEEeCCCccc-------------hHHHHHHHHHHhCe-EEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECccc
Confidence 4799999999752 22334567777774 455556666554332 34555555567999999999999
Q ss_pred CC
Q 003355 228 MD 229 (827)
Q Consensus 228 ~~ 229 (827)
..
T Consensus 129 ~~ 130 (237)
T cd04168 129 AG 130 (237)
T ss_pred cC
Confidence 74
No 144
>PLN03108 Rab family protein; Provisional
Probab=98.73 E-value=1.2e-07 Score=98.34 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=67.8
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
.-+|+|+|+.++|||||++.|++..|-+....+.+. .+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~--------------~~---------------------------- 43 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV--------------EF---------------------------- 43 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccc--------------eE----------------------------
Confidence 357999999999999999999988763321110000 00
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH--
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~-- 204 (827)
....+.+.+. ...+.|+||||.. ....+...|++..+.++++ .+.....+-...
T Consensus 44 ---------~~~~i~~~~~-~i~l~l~Dt~G~~-------------~~~~~~~~~~~~ad~~vlv-~D~~~~~s~~~l~~ 99 (210)
T PLN03108 44 ---------GARMITIDNK-PIKLQIWDTAGQE-------------SFRSITRSYYRGAAGALLV-YDITRRETFNHLAS 99 (210)
T ss_pred ---------EEEEEEECCE-EEEEEEEeCCCcH-------------HHHHHHHHHhccCCEEEEE-EECCcHHHHHHHHH
Confidence 0001111111 1257899999942 3445566788877755544 454432222221
Q ss_pred -HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 -LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 -l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+...........++++|.||+|+..
T Consensus 100 ~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 100 WLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHHHHHhcCCCCcEEEEEECccCcc
Confidence 2222333334688999999999975
No 145
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.73 E-value=2.2e-07 Score=92.68 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=41.9
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHh-C---CCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA-D---PDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~-d---p~g~rtIgVlTK 224 (827)
.+.|+||||.. ..+.+...|+...+ ++++|.++....+-.++......+ . ..+.+.++|.||
T Consensus 54 ~~~l~Dt~G~~-------------~~~~~~~~~~~~a~-~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 119 (168)
T cd04149 54 KFNVWDVGGQD-------------KIRPLWRHYYTGTQ-GLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANK 119 (168)
T ss_pred EEEEEECCCCH-------------HHHHHHHHHhccCC-EEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEEC
Confidence 58999999953 33455567888887 455555555432222222333222 1 135799999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
+|+.+
T Consensus 120 ~Dl~~ 124 (168)
T cd04149 120 QDLPD 124 (168)
T ss_pred cCCcc
Confidence 99875
No 146
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.73 E-value=1.5e-07 Score=95.51 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=41.3
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---HHHHHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~---l~la~~~dp~g~rtIgVlTK~ 225 (827)
.+.|+||||.. ....+...+++..+.+|++ .+.+..-+-... +...+...+...+.|+|.||.
T Consensus 50 ~~~i~Dt~g~~-------------~~~~~~~~~~~~~d~iilv-~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~ 115 (188)
T cd04125 50 KLQIWDTNGQE-------------RFRSLNNSYYRGAHGYLLV-YDVTDQESFENLKFWINEINRYARENVIKVIVANKS 115 (188)
T ss_pred EEEEEECCCcH-------------HHHhhHHHHccCCCEEEEE-EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 57899999942 3444566788888755555 444432222222 222333344457899999999
Q ss_pred CCCC
Q 003355 226 DIMD 229 (827)
Q Consensus 226 D~~~ 229 (827)
|+.+
T Consensus 116 Dl~~ 119 (188)
T cd04125 116 DLVN 119 (188)
T ss_pred CCcc
Confidence 9874
No 147
>PLN03110 Rab GTPase; Provisional
Probab=98.73 E-value=1.4e-07 Score=98.22 Aligned_cols=117 Identities=16% Similarity=0.170 Sum_probs=70.5
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
.-.|+|||++++|||||++.|++..+. .... .|-. +
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~~-~t~g---~--------------------------------------- 47 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFC-LESK-STIG---V--------------------------------------- 47 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCCC-Ccee---E---------------------------------------
Confidence 348999999999999999999988752 1111 1100 0
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch---H
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---d 203 (827)
......+.+.+ ....+.|+||||- ..+..+...|++..+. +|+|.+.+....-. .
T Consensus 48 -------~~~~~~v~~~~-~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~~~-~ilv~d~~~~~s~~~~~~ 105 (216)
T PLN03110 48 -------EFATRTLQVEG-KTVKAQIWDTAGQ-------------ERYRAITSAYYRGAVG-ALLVYDITKRQTFDNVQR 105 (216)
T ss_pred -------EEEEEEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhCCCCE-EEEEEECCChHHHHHHHH
Confidence 00001111111 1236889999993 2455677788888764 45555554322211 2
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+..++...+.+.+.|+|.||+|+..
T Consensus 106 ~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 106 WLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred HHHHHHHhCCCCCeEEEEEEChhccc
Confidence 23344444455789999999999854
No 148
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.73 E-value=7.3e-08 Score=98.79 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=44.8
Q ss_pred cccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCc-eEEeeecC
Q 003355 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKL 225 (827)
Q Consensus 147 ~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~r-tIgVlTK~ 225 (827)
...++||||||+. ..+..+ ..-+...+ ++++|+++..++..++ ..+++.+...+.+ .|+|+||+
T Consensus 64 ~~~i~~iDtPG~~------------~~~~~~-~~~~~~~D-~~ilVvda~~g~~~~~-~~~~~~~~~~~~~~iIvviNK~ 128 (195)
T cd01884 64 NRHYAHVDCPGHA------------DYIKNM-ITGAAQMD-GAILVVSATDGPMPQT-REHLLLARQVGVPYIVVFLNKA 128 (195)
T ss_pred CeEEEEEECcCHH------------HHHHHH-HHHhhhCC-EEEEEEECCCCCcHHH-HHHHHHHHHcCCCcEEEEEeCC
Confidence 4578999999963 133333 33445555 6666777877665554 4555556556665 78999999
Q ss_pred CCCC
Q 003355 226 DIMD 229 (827)
Q Consensus 226 D~~~ 229 (827)
|+++
T Consensus 129 D~~~ 132 (195)
T cd01884 129 DMVD 132 (195)
T ss_pred CCCC
Confidence 9985
No 149
>PLN03118 Rab family protein; Provisional
Probab=98.72 E-value=1.1e-07 Score=98.45 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.+|+|||..++|||||+++|++..+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~ 39 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV 39 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC
Confidence 4799999999999999999998764
No 150
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.72 E-value=8e-08 Score=95.44 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=42.3
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhC--CCCCceEEeeecC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIAD--PDGYRTIGIITKL 225 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~d--p~g~rtIgVlTK~ 225 (827)
..+.|+||||-. ..+.+...|++..+.+| +|+++.....-..+......+. ..+.+.++|.||.
T Consensus 44 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~ii-~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~ 109 (164)
T cd04162 44 AIMELLEIGGSQ-------------NLRKYWKRYLSGSQGLI-FVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQ 109 (164)
T ss_pred eEEEEEECCCCc-------------chhHHHHHHHhhCCEEE-EEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCc
Confidence 368999999943 23455567888888555 4555544322222222222221 2478999999999
Q ss_pred CCCCC
Q 003355 226 DIMDR 230 (827)
Q Consensus 226 D~~~~ 230 (827)
|+...
T Consensus 110 Dl~~~ 114 (164)
T cd04162 110 DLPAA 114 (164)
T ss_pred CCcCC
Confidence 98653
No 151
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.71 E-value=2.1e-07 Score=92.88 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=67.6
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
.-+|+|+|..++|||||++++++..|-|....+++..- +.
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~-------------~~--------------------------- 43 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPR-------------YA--------------------------- 43 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcc-------------eE---------------------------
Confidence 34799999999999999999999876212211111000 00
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
.. .+.+.+ ....+.++|++|-... ..+...|+.+.+ ++|+|.++....+-..+..
T Consensus 44 --------~~--~~~~~~-~~~~l~~~d~~g~~~~-------------~~~~~~~~~~~d-~~llv~d~~~~~s~~~~~~ 98 (169)
T cd01892 44 --------VN--TVEVYG-QEKYLILREVGEDEVA-------------ILLNDAELAACD-VACLVYDSSDPKSFSYCAE 98 (169)
T ss_pred --------EE--EEEECC-eEEEEEEEecCCcccc-------------cccchhhhhcCC-EEEEEEeCCCHHHHHHHHH
Confidence 00 111111 1135789999985321 233445777776 5555566644322222234
Q ss_pred HHHHhC-CCCCceEEeeecCCCCC
Q 003355 207 IAGIAD-PDGYRTIGIITKLDIMD 229 (827)
Q Consensus 207 la~~~d-p~g~rtIgVlTK~D~~~ 229 (827)
+.+.+. ..+.++++|+||+|+.+
T Consensus 99 ~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 99 VYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred HHHHhccCCCCeEEEEEEcccccc
Confidence 444442 23689999999999975
No 152
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.71 E-value=2.4e-07 Score=92.95 Aligned_cols=24 Identities=46% Similarity=0.657 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|+|..|+|||||++.+++..+
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~ 26 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999998764
No 153
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.71 E-value=2.4e-07 Score=95.47 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+++|..++|||||+++|.|.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999887
No 154
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.71 E-value=1.1e-07 Score=94.67 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEccCCCCHHHHHHHHhCCCC
Q 003355 50 VAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
|+|+|+.++|||||++.+++..|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~ 23 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF 23 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC
Confidence 68999999999999999999875
No 155
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.70 E-value=1.1e-07 Score=94.60 Aligned_cols=24 Identities=21% Similarity=0.548 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|+|++++|||||++.++...+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~ 25 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999986654
No 156
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.70 E-value=2.8e-07 Score=96.34 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|+|+.++|||||++.+++..+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~ 25 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEY 25 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCc
Confidence 699999999999999999986654
No 157
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.70 E-value=6.4e-08 Score=95.65 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.|+|||..++|||||++++++..|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~ 24 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF 24 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc
Confidence 489999999999999999997765
No 158
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.70 E-value=2.6e-07 Score=92.10 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+++|..++|||||+++|++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~ 24 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF 24 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC
Confidence 489999999999999999998754
No 159
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.70 E-value=1.8e-07 Score=110.98 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=43.3
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCc-eEEeeecCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~r-tIgVlTK~D 226 (827)
..++|||+||.. ..+.. ...++...+ ++++|++++.+...+. ...+..+...+.+ .|+|+||+|
T Consensus 50 ~~v~~iDtPGhe------------~f~~~-~~~g~~~aD-~aILVVDa~~G~~~qT-~ehl~il~~lgi~~iIVVlNK~D 114 (581)
T TIGR00475 50 YRLGFIDVPGHE------------KFISN-AIAGGGGID-AALLVVDADEGVMTQT-GEHLAVLDLLGIPHTIVVITKAD 114 (581)
T ss_pred EEEEEEECCCHH------------HHHHH-HHhhhccCC-EEEEEEECCCCCcHHH-HHHHHHHHHcCCCeEEEEEECCC
Confidence 468999999931 23333 345666776 5666777776543332 2222333334566 999999999
Q ss_pred CCCCc
Q 003355 227 IMDRG 231 (827)
Q Consensus 227 ~~~~~ 231 (827)
+.+..
T Consensus 115 lv~~~ 119 (581)
T TIGR00475 115 RVNEE 119 (581)
T ss_pred CCCHH
Confidence 98643
No 160
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.70 E-value=1.8e-07 Score=93.80 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=42.4
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---HHHHHHh-CCCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIA-DPDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~---l~la~~~-dp~g~rtIgVlTK 224 (827)
.+.|+||||.. ..+.+...|+...+++|+++. .+...+-..+ ....... ...+.++|+|.||
T Consensus 51 ~l~i~Dt~G~~-------------~~~~l~~~~~~~~d~~ilv~d-~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK 116 (172)
T cd04141 51 LLDILDTAGQA-------------EFTAMRDQYMRCGEGFIICYS-VTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNK 116 (172)
T ss_pred EEEEEeCCCch-------------hhHHHhHHHhhcCCEEEEEEE-CCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 58899999943 345667778888876666544 3332222222 2233333 2346899999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
.|+.+
T Consensus 117 ~Dl~~ 121 (172)
T cd04141 117 VDLES 121 (172)
T ss_pred hhhhh
Confidence 99864
No 161
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.69 E-value=2.4e-07 Score=91.51 Aligned_cols=115 Identities=20% Similarity=0.288 Sum_probs=67.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
+|+|+|+.++|||||++.+++..|.+.. ..|..+- +
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~t~~~~------------~------------------------------ 37 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH--ISTIGVD------------F------------------------------ 37 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceeeE------------E------------------------------
Confidence 5999999999999999999988763321 1111100 0
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHH
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA 208 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la 208 (827)
....+.+.+ ....+.++||||-. ....+...|+...+++++ |.+.+..-+-.++..+.
T Consensus 38 -------~~~~~~~~~-~~~~l~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~-v~d~~~~~sf~~~~~~~ 95 (161)
T cd04117 38 -------KMKTIEVDG-IKVRIQIWDTAGQE-------------RYQTITKQYYRRAQGIFL-VYDISSERSYQHIMKWV 95 (161)
T ss_pred -------EEEEEEECC-EEEEEEEEeCCCcH-------------hHHhhHHHHhcCCcEEEE-EEECCCHHHHHHHHHHH
Confidence 000111111 11357899999932 344556678888875554 44444332222222222
Q ss_pred H---HhCCCCCceEEeeecCCCCC
Q 003355 209 G---IADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 209 ~---~~dp~g~rtIgVlTK~D~~~ 229 (827)
. ...+...+.++|.||.|+..
T Consensus 96 ~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 96 SDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred HHHHHhCCCCCeEEEEEECccccc
Confidence 2 33444678999999999865
No 162
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.68 E-value=1.9e-07 Score=112.31 Aligned_cols=119 Identities=14% Similarity=0.250 Sum_probs=73.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..|.|+|+|..++|||||+++|.+..+.....+..|.-.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i----------------------------------------- 281 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKI----------------------------------------- 281 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCcccccc-----------------------------------------
Confidence 568999999999999999999998765211111111100
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
....+.+.. ......++||||||. +.+..+...++...+ ++++|+++......+. .
T Consensus 282 --------~~~~v~~~~-~~~~~kItfiDTPGh-------------e~F~~mr~rg~~~aD-iaILVVDA~dGv~~QT-~ 337 (742)
T CHL00189 282 --------GAYEVEFEY-KDENQKIVFLDTPGH-------------EAFSSMRSRGANVTD-IAILIIAADDGVKPQT-I 337 (742)
T ss_pred --------ceEEEEEEe-cCCceEEEEEECCcH-------------HHHHHHHHHHHHHCC-EEEEEEECcCCCChhh-H
Confidence 000001110 011246899999994 245566667888777 4455556665543332 3
Q ss_pred HHHHHhCCCCCceEEeeecCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..++.+...+.++|+|+||+|+..
T Consensus 338 E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 338 EAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred HHHHHHHhcCceEEEEEECCCccc
Confidence 444455556789999999999975
No 163
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.68 E-value=3e-07 Score=92.09 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
..+|+++|.+++|||||++.|++..+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~ 40 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEV 40 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC
Confidence 45899999999999999999987765
No 164
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.68 E-value=1.9e-07 Score=88.38 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=44.7
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH----HHHHhCCCCCceEEeee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ----IAGIADPDGYRTIGIIT 223 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~----la~~~dp~g~rtIgVlT 223 (827)
..++|+|+||.... ......++...+ ++++|+++.......+... ........+.++++|+|
T Consensus 45 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~n 110 (157)
T cd00882 45 VKLQIWDTAGQERF-------------RSLRRLYYRGAD-GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGN 110 (157)
T ss_pred EEEEEEecCChHHH-------------HhHHHHHhcCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEe
Confidence 46899999996532 112245666666 5666666665544433322 33344455799999999
Q ss_pred cCCCCCCc
Q 003355 224 KLDIMDRG 231 (827)
Q Consensus 224 K~D~~~~~ 231 (827)
|.|+....
T Consensus 111 k~D~~~~~ 118 (157)
T cd00882 111 KIDLPEER 118 (157)
T ss_pred cccccccc
Confidence 99998643
No 165
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.67 E-value=8.4e-08 Score=103.25 Aligned_cols=68 Identities=24% Similarity=0.284 Sum_probs=45.6
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+ +...+..++...+ .+++|+++......+. ..+.+.+...+.+.++|+||+|+
T Consensus 64 ~~i~liDtPG~~~-------------f~~~~~~~l~~aD-~~i~Vvd~~~g~~~~~-~~~~~~~~~~~~p~iivvNK~D~ 128 (268)
T cd04170 64 HKINLIDTPGYAD-------------FVGETRAALRAAD-AALVVVSAQSGVEVGT-EKLWEFADEAGIPRIIFINKMDR 128 (268)
T ss_pred EEEEEEECcCHHH-------------HHHHHHHHHHHCC-EEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECCcc
Confidence 4789999999642 2234456677676 5556666665544332 34555555667899999999999
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
...
T Consensus 129 ~~~ 131 (268)
T cd04170 129 ERA 131 (268)
T ss_pred CCC
Confidence 854
No 166
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.66 E-value=8.5e-08 Score=94.86 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=22.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|+|..++|||||+++|++..+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~ 25 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 599999999999999999999876
No 167
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.66 E-value=6.5e-07 Score=90.58 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=43.2
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHh-CC---CCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA-DP---DGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~-dp---~g~rtIgVlTK 224 (827)
.+.|+|+||- +..+.+...|++..+++ ++|.+++....-.++......+ .. ...+.++|+||
T Consensus 62 ~~~i~D~~Gq-------------~~~~~~~~~~~~~a~~i-I~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK 127 (181)
T PLN00223 62 SFTVWDVGGQ-------------DKIRPLWRHYFQNTQGL-IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
T ss_pred EEEEEECCCC-------------HHHHHHHHHHhccCCEE-EEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEEC
Confidence 5899999993 24566778899988855 5555555432222233222222 21 35789999999
Q ss_pred CCCCCC
Q 003355 225 LDIMDR 230 (827)
Q Consensus 225 ~D~~~~ 230 (827)
.|+.+.
T Consensus 128 ~Dl~~~ 133 (181)
T PLN00223 128 QDLPNA 133 (181)
T ss_pred CCCCCC
Confidence 998753
No 168
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.66 E-value=1.6e-07 Score=94.38 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=41.9
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHh-C---CCCCceEEeee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA-D---PDGYRTIGIIT 223 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~-d---p~g~rtIgVlT 223 (827)
..+.|+||||.. ..+.+...|++..+++|+ |.++...-+-.++......+ . ..+.+.++|+|
T Consensus 57 ~~l~l~D~~G~~-------------~~~~~~~~~~~~ad~ii~-v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 57 ISFTVWDVGGQD-------------KIRPLWRHYYTNTQGLIF-VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFAN 122 (175)
T ss_pred EEEEEEECCCCh-------------hhHHHHHHHhCCCCEEEE-EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence 358899999943 345566788998885555 55544322222222333222 1 12578999999
Q ss_pred cCCCCC
Q 003355 224 KLDIMD 229 (827)
Q Consensus 224 K~D~~~ 229 (827)
|.|+.+
T Consensus 123 K~Dl~~ 128 (175)
T smart00177 123 KQDLPD 128 (175)
T ss_pred CcCccc
Confidence 999865
No 169
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.65 E-value=4.1e-07 Score=108.46 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=42.7
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCc-eEEeeecCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~r-tIgVlTK~D 226 (827)
..++||||||.- ..+..|+ .++...+ ++++|++++.++..++ ...+..+...+.+ .|+|+||+|
T Consensus 51 ~~i~~IDtPGhe------------~fi~~m~-~g~~~~D-~~lLVVda~eg~~~qT-~ehl~il~~lgi~~iIVVlNKiD 115 (614)
T PRK10512 51 RVLGFIDVPGHE------------KFLSNML-AGVGGID-HALLVVACDDGVMAQT-REHLAILQLTGNPMLTVALTKAD 115 (614)
T ss_pred cEEEEEECCCHH------------HHHHHHH-HHhhcCC-EEEEEEECCCCCcHHH-HHHHHHHHHcCCCeEEEEEECCc
Confidence 358999999942 2444443 4566666 5566678877665544 2333333333455 579999999
Q ss_pred CCCC
Q 003355 227 IMDR 230 (827)
Q Consensus 227 ~~~~ 230 (827)
+.++
T Consensus 116 lv~~ 119 (614)
T PRK10512 116 RVDE 119 (614)
T ss_pred cCCH
Confidence 9863
No 170
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.65 E-value=7.7e-08 Score=104.00 Aligned_cols=138 Identities=17% Similarity=0.289 Sum_probs=77.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
.|+|||..|+|||||||+|++..+.+......+.. +. .
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~--------------~~-~--------------------------- 43 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPS--------------AS-I--------------------------- 43 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S-----------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccccccccccc--------------cc-c---------------------------
Confidence 58999999999999999999997755431110000 00 0
Q ss_pred CCCcccccceEEEEecC-CcccEEEEeCCCCCcCC-CCCCchHHHHHHHHHHHHHhcCC-------------ccEEEeec
Q 003355 129 GNKGVSDKQIRLKIFSP-HVLDITLVDLPGITKVP-VGEQPADIEARIRTMIMSYIKQP-------------SCLILAVT 193 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p-~~~~ltLVDlPGi~~~~-~~~q~~di~~~i~~lv~~yi~~~-------------~~iIL~V~ 193 (827)
.....-......+... ...+|+||||||+.+.- .......+...+.+.-..|+.++ ++.+.++.
T Consensus 44 -~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~ 122 (281)
T PF00735_consen 44 -SRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIP 122 (281)
T ss_dssp --SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-
T ss_pred -ccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEc
Confidence 0000001111122211 22479999999996542 12223445555555555565411 45666666
Q ss_pred CCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 194 PANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 194 ~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
|....+...| +...+.+... .++|-||.|.|.+...
T Consensus 123 pt~~~L~~~D-i~~mk~Ls~~-vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 123 PTGHGLKPLD-IEFMKRLSKR-VNVIPVIAKADTLTPE 158 (281)
T ss_dssp TTSSSS-HHH-HHHHHHHTTT-SEEEEEESTGGGS-HH
T ss_pred CCCccchHHH-HHHHHHhccc-ccEEeEEecccccCHH
Confidence 6667787777 5778888764 8899999999999754
No 171
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.65 E-value=3.9e-07 Score=90.76 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=23.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.+|+|+|..++|||||++.+++..+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~ 26 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF 26 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999998765
No 172
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.65 E-value=5.8e-07 Score=88.72 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=41.9
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHh-C---CCCCceEEeee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA-D---PDGYRTIGIIT 223 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~-d---p~g~rtIgVlT 223 (827)
..+.|+||||.. ....+...|++..+++ ++|.++....+-.++......+ . ....+.++|+|
T Consensus 44 ~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~~-i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 109 (159)
T cd04150 44 ISFTVWDVGGQD-------------KIRPLWRHYFQNTQGL-IFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFAN 109 (159)
T ss_pred EEEEEEECCCCH-------------hHHHHHHHHhcCCCEE-EEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEE
Confidence 358999999953 3445666789988755 5555554332222223323222 1 12478999999
Q ss_pred cCCCCC
Q 003355 224 KLDIMD 229 (827)
Q Consensus 224 K~D~~~ 229 (827)
|.|+.+
T Consensus 110 K~Dl~~ 115 (159)
T cd04150 110 KQDLPN 115 (159)
T ss_pred CCCCCC
Confidence 999965
No 173
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.65 E-value=5.6e-07 Score=91.11 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=40.9
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHh-CC---CCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA-DP---DGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~-dp---~g~rtIgVlTK 224 (827)
.+.|+||||.. ..+.+...|++..+++|++ +++...-+-.++......+ .. ...++|+|+||
T Consensus 62 ~~~l~D~~G~~-------------~~~~~~~~~~~~ad~iI~v-~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK 127 (182)
T PTZ00133 62 KFTMWDVGGQD-------------KLRPLWRHYYQNTNGLIFV-VDSNDRERIGDAREELERMLSEDELRDAVLLVFANK 127 (182)
T ss_pred EEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEE-EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeC
Confidence 58999999942 3455677889988865555 4544321112222222222 21 24789999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
.|+.+
T Consensus 128 ~Dl~~ 132 (182)
T PTZ00133 128 QDLPN 132 (182)
T ss_pred CCCCC
Confidence 99864
No 174
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.64 E-value=3.3e-07 Score=87.94 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=24.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~ 77 (827)
.+|+++|..++|||||+|+|++.. +|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC
Confidence 579999999999999999999987 45443
No 175
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.63 E-value=2.3e-07 Score=112.44 Aligned_cols=116 Identities=20% Similarity=0.255 Sum_probs=71.4
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
...|.|+|+|..++||||||++|.+..+.....+..|.-.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~i---------------------------------------- 327 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHI---------------------------------------- 327 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeec----------------------------------------
Confidence 3569999999999999999999987765211111011000
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
. ...+.+ . ...++||||||.. .+..+...++...+ ++++|+++......+.
T Consensus 328 ---------g--a~~v~~--~-~~~ItfiDTPGhe-------------~F~~m~~rga~~aD-iaILVVdAddGv~~qT- 378 (787)
T PRK05306 328 ---------G--AYQVET--N-GGKITFLDTPGHE-------------AFTAMRARGAQVTD-IVVLVVAADDGVMPQT- 378 (787)
T ss_pred ---------c--EEEEEE--C-CEEEEEEECCCCc-------------cchhHHHhhhhhCC-EEEEEEECCCCCCHhH-
Confidence 0 001111 1 1358999999953 22344456677666 5555567765543332
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
...++.+...+.++|+|+||+|+..
T Consensus 379 ~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 379 IEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred HHHHHHHHhcCCcEEEEEECccccc
Confidence 3344445556789999999999964
No 176
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.63 E-value=2.1e-07 Score=97.23 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=41.1
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---HHHHHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~---l~la~~~dp~g~rtIgVlTK 224 (827)
..+.|+||||.. ....+...|.+..+++|++ .+.+...+-... +...+... .+.++|+|.||
T Consensus 62 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv-fD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK 126 (219)
T PLN03071 62 IRFYCWDTAGQE-------------KFGGLRDGYYIHGQCAIIM-FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126 (219)
T ss_pred EEEEEEECCCch-------------hhhhhhHHHcccccEEEEE-EeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEc
Confidence 368999999953 2345556788888755554 444433222222 22223333 35899999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
+|+.+
T Consensus 127 ~Dl~~ 131 (219)
T PLN03071 127 VDVKN 131 (219)
T ss_pred hhhhh
Confidence 99864
No 177
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.62 E-value=6.8e-07 Score=93.43 Aligned_cols=67 Identities=10% Similarity=0.102 Sum_probs=40.9
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---HHHHHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~---l~la~~~dp~g~rtIgVlTK~ 225 (827)
++.||||||.. ....+...|++..+ ++++|.+++...+-..+ +...........++|+|.||.
T Consensus 45 ~l~iwDt~G~e-------------~~~~l~~~~~~~ad-~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~ 110 (220)
T cd04126 45 NISIWDTAGRE-------------QFHGLGSMYCRGAA-AVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKL 110 (220)
T ss_pred EEEEEeCCCcc-------------cchhhHHHHhccCC-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 58999999953 23345566888887 55555555543222221 111222333457899999999
Q ss_pred CCCC
Q 003355 226 DIMD 229 (827)
Q Consensus 226 D~~~ 229 (827)
|+.+
T Consensus 111 DL~~ 114 (220)
T cd04126 111 DLTE 114 (220)
T ss_pred cccc
Confidence 9975
No 178
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.62 E-value=4.5e-07 Score=96.44 Aligned_cols=24 Identities=25% Similarity=0.672 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|+|..++|||||++.+++..|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f 25 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF 25 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 599999999999999999998765
No 179
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.61 E-value=4.8e-07 Score=90.03 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|+|..++|||||++.+++..|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~ 25 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999998876
No 180
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.60 E-value=3.2e-07 Score=95.88 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=46.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..+.||||||..+ +...+..+++..+++ ++|+++......+. ..+++.....+.+.|+|+||+|+
T Consensus 73 ~~i~iiDTPG~~~-------------f~~~~~~~l~~aD~~-ilVvD~~~g~~~~t-~~~l~~~~~~~~p~ilviNKiD~ 137 (222)
T cd01885 73 YLINLIDSPGHVD-------------FSSEVTAALRLCDGA-LVVVDAVEGVCVQT-ETVLRQALKERVKPVLVINKIDR 137 (222)
T ss_pred eEEEEECCCCccc-------------cHHHHHHHHHhcCee-EEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECCCc
Confidence 4689999999753 233456778888755 44566666654443 45566665567899999999998
Q ss_pred C
Q 003355 228 M 228 (827)
Q Consensus 228 ~ 228 (827)
.
T Consensus 138 ~ 138 (222)
T cd01885 138 L 138 (222)
T ss_pred c
Confidence 7
No 181
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.59 E-value=1.3e-06 Score=88.45 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=40.7
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH---HHHHHHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d---~l~la~~~dp~g~rtIgVlTK 224 (827)
..+.|+||+|-. ....+...|+++.+ ++++|.+.....+-.+ .+..++...+...+ |+|.||
T Consensus 49 ~~l~iwDt~G~~-------------~~~~~~~~~~~~a~-~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK 113 (182)
T cd04128 49 ITFSIWDLGGQR-------------EFINMLPLVCNDAV-AILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTK 113 (182)
T ss_pred EEEEEEeCCCch-------------hHHHhhHHHCcCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEc
Confidence 368899999942 34456667888887 4555555543322222 23334444444444 789999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
+|+..
T Consensus 114 ~Dl~~ 118 (182)
T cd04128 114 YDLFA 118 (182)
T ss_pred hhccc
Confidence 99974
No 182
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.59 E-value=3.7e-07 Score=108.48 Aligned_cols=132 Identities=14% Similarity=0.231 Sum_probs=74.1
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
+-.|++||..++|||||+++|+... |..+++. . +....|..+..+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~-------------~-------~~~~~D~~~~Er--------- 47 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISERE-------------M-------REQVLDSMDLER--------- 47 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCcccc-------------c-------cccccCCChHHH---------
Confidence 3479999999999999999998752 1112110 0 001111111100
Q ss_pred cCCCCcccccceEEEEe--cCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 127 AGGNKGVSDKQIRLKIF--SPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~--~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
..+..+....+.+... ......+.||||||.. .+...+..|+...+ .+++|+++......+..
T Consensus 48 -erGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~-------------dF~~~v~~~l~~aD-~aILVvDat~g~~~qt~ 112 (595)
T TIGR01393 48 -ERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV-------------DFSYEVSRSLAACE-GALLLVDAAQGIEAQTL 112 (595)
T ss_pred -hcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH-------------HHHHHHHHHHHhCC-EEEEEecCCCCCCHhHH
Confidence 0111222233333332 1223578999999964 23345667888887 55556677766554442
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..+.... ..+.+.|+|+||+|+.+
T Consensus 113 ~~~~~~~-~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 113 ANVYLAL-ENDLEIIPVINKIDLPS 136 (595)
T ss_pred HHHHHHH-HcCCCEEEEEECcCCCc
Confidence 2222222 24678999999999864
No 183
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.58 E-value=2.5e-07 Score=109.94 Aligned_cols=71 Identities=24% Similarity=0.273 Sum_probs=45.9
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc-CCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK-QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~-~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.+.+|||||..+-.... .+ +.+...|+. +..+++++|+++...- ..+.+..++...+.++++|+||+|+
T Consensus 42 ~i~lvDtPG~~~~~~~s----~~---e~v~~~~l~~~~aDvvI~VvDat~le---r~l~l~~ql~~~~~PiIIVlNK~Dl 111 (591)
T TIGR00437 42 DIEIVDLPGIYSLTTFS----LE---EEVARDYLLNEKPDLVVNVVDASNLE---RNLYLTLQLLELGIPMILALNLVDE 111 (591)
T ss_pred EEEEEECCCccccCccc----hH---HHHHHHHHhhcCCCEEEEEecCCcch---hhHHHHHHHHhcCCCEEEEEehhHH
Confidence 57899999987543211 11 233445654 2335788888876532 2245555666678999999999999
Q ss_pred CC
Q 003355 228 MD 229 (827)
Q Consensus 228 ~~ 229 (827)
.+
T Consensus 112 ~~ 113 (591)
T TIGR00437 112 AE 113 (591)
T ss_pred HH
Confidence 64
No 184
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.58 E-value=4.9e-07 Score=92.25 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=42.7
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH---HHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI---AGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l---a~~~dp~g~rtIgVlTK 224 (827)
..|.|+||||-. ....+...|++..+++ |+|.+.....+-..+..+ +....+ +.+.|+|.||
T Consensus 55 ~~l~iwDt~G~~-------------~~~~l~~~~~~~ad~i-llVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK 119 (189)
T cd04121 55 VKLQLWDTSGQG-------------RFCTIFRSYSRGAQGI-ILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNR 119 (189)
T ss_pred EEEEEEeCCCcH-------------HHHHHHHHHhcCCCEE-EEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 358899999942 4556777899988754 445555433332222223 333333 5889999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
.|+..
T Consensus 120 ~DL~~ 124 (189)
T cd04121 120 LHLAF 124 (189)
T ss_pred ccchh
Confidence 99964
No 185
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.57 E-value=3e-07 Score=95.49 Aligned_cols=66 Identities=14% Similarity=0.248 Sum_probs=43.1
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..+.||||||..+ +...+..++...++ +++|+++........ ..+.+.+...+.+.++|+||+|+
T Consensus 71 ~~i~iiDtpG~~~-------------f~~~~~~~~~~aD~-~llVvD~~~~~~~~~-~~~~~~~~~~~~p~iiviNK~D~ 135 (213)
T cd04167 71 YLFNIIDTPGHVN-------------FMDEVAAALRLSDG-VVLVVDVVEGVTSNT-ERLIRHAILEGLPIVLVINKIDR 135 (213)
T ss_pred EEEEEEECCCCcc-------------hHHHHHHHHHhCCE-EEEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECccc
Confidence 4689999999652 22345567777774 455556655443322 34444444456899999999998
Q ss_pred C
Q 003355 228 M 228 (827)
Q Consensus 228 ~ 228 (827)
+
T Consensus 136 ~ 136 (213)
T cd04167 136 L 136 (213)
T ss_pred C
Confidence 7
No 186
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.57 E-value=3.3e-07 Score=108.52 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=71.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..|.|+++|..++|||||+++|.+..+.....+..|.-. +
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~i--------------g-------------------------- 125 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHI--------------G-------------------------- 125 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecc--------------e--------------------------
Confidence 569999999999999999999998775322211111110 0
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
...+..++...++||||||.. .+..+...+....+.+ ++|++++.....+. .
T Consensus 126 -------------~~~v~~~~~~~i~~iDTPGhe-------------~F~~~r~rga~~aDia-ILVVda~dgv~~qT-~ 177 (587)
T TIGR00487 126 -------------AYHVENEDGKMITFLDTPGHE-------------AFTSMRARGAKVTDIV-VLVVAADDGVMPQT-I 177 (587)
T ss_pred -------------EEEEEECCCcEEEEEECCCCc-------------chhhHHHhhhccCCEE-EEEEECCCCCCHhH-H
Confidence 001111111268999999953 2234444667777644 45556665443332 3
Q ss_pred HHHHHhCCCCCceEEeeecCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..++.....+.++|+|+||+|+..
T Consensus 178 e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 178 EAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred HHHHHHHHcCCCEEEEEECccccc
Confidence 444444555789999999999964
No 187
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.55 E-value=1.5e-06 Score=89.64 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=23.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~l 73 (827)
+|+|+|+.++|||||++.+++..|.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~ 26 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVL 26 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6999999999999999999998764
No 188
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.55 E-value=7.7e-07 Score=90.53 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|+|+.++|||||++.+++..|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~ 25 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF 25 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 699999999999999999998865
No 189
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.55 E-value=8e-07 Score=88.33 Aligned_cols=27 Identities=30% Similarity=0.687 Sum_probs=24.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.-.+|+|+|..++|||||+++|.|..+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~ 39 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI 39 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC
Confidence 467899999999999999999999753
No 190
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.54 E-value=2.3e-07 Score=98.48 Aligned_cols=122 Identities=20% Similarity=0.279 Sum_probs=71.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccC--CCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRG--NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~--~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
..+.|.+||-+|||||||||||+..+ |+- ...+|-.|.. |
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~i-------------------G----------------- 236 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHI-------------------G----------------- 236 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccC--Ccccccceeeecccc-------------------c-----------------
Confidence 34667899999999999999999876 431 1223333310 0
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc---cc
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---LA 200 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---~~ 200 (827)
.+...+...+++-|+|||+..+..+- -.----.++|++.+ ++++|+|.+.. -.
T Consensus 237 -----------------~v~yddf~q~tVADiPGiI~GAh~nk------GlG~~FLrHiER~~-~l~fVvD~s~~~~~~p 292 (366)
T KOG1489|consen 237 -----------------TVNYDDFSQITVADIPGIIEGAHMNK------GLGYKFLRHIERCK-GLLFVVDLSGKQLRNP 292 (366)
T ss_pred -----------------eeeccccceeEeccCccccccccccC------cccHHHHHHHHhhc-eEEEEEECCCcccCCH
Confidence 01111223489999999997643221 11111234555655 88888888765 22
Q ss_pred chHHHHHHHHhCC-----CCCceEEeeecCCCCC
Q 003355 201 NSDALQIAGIADP-----DGYRTIGIITKLDIMD 229 (827)
Q Consensus 201 ~~d~l~la~~~dp-----~g~rtIgVlTK~D~~~ 229 (827)
-+....+..++.- ..++.++|+||+|+.+
T Consensus 293 ~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e 326 (366)
T KOG1489|consen 293 WQQLQLLIEELELYEKGLADRPALIVANKIDLPE 326 (366)
T ss_pred HHHHHHHHHHHHHHhhhhccCceEEEEeccCchh
Confidence 2222223333321 1366999999999974
No 191
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.54 E-value=6.9e-07 Score=98.85 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=93.7
Q ss_pred HHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCccccee-ecCCCcc
Q 003355 30 NKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF-LHLPGKR 108 (827)
Q Consensus 30 ~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~-~~~~g~~ 108 (827)
|-.+|+..+.|-. -.|+|||..++|||||||++++.=++|--.+.--|- ....+. ...+|+.
T Consensus 5 ~iykDIa~RT~G~-----IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~------------Ra~DELpqs~~Gkt 67 (492)
T TIGR02836 5 DIYKDIAERTQGD-----IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKE------------RAQDELPQSAAGKT 67 (492)
T ss_pred hHHHHHHHHhCCc-----EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHh------------HHHhccCcCCCCCC
Confidence 5567777777743 249999999999999999999997766433210000 000000 0011211
Q ss_pred ccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCC-chH---------------HHH
Q 003355 109 FYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQ-PAD---------------IEA 172 (827)
Q Consensus 109 ~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q-~~d---------------i~~ 172 (827)
++. -..+-+-.+.+.|........++.|||++|+.....-+. ..+ ..+
T Consensus 68 ItT----------------TePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~ 131 (492)
T TIGR02836 68 IMT----------------TEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEE 131 (492)
T ss_pred ccc----------------CCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhh
Confidence 100 011122334444554433345799999999976543221 110 111
Q ss_pred HHHHHHHHHhcCCccEEEeec-CCC------CcccchHHHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 173 RIRTMIMSYIKQPSCLILAVT-PAN------SDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~-~a~------~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..+-=+++-|.+..+|-|+|+ ++. .+....+ .++..++...++|.|+|+||.|-..
T Consensus 132 AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aE-e~~i~eLk~~~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 132 AAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAE-ERVIEELKELNKPFIILLNSTHPYH 194 (492)
T ss_pred hhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHH-HHHHHHHHhcCCCEEEEEECcCCCC
Confidence 111225567774445777766 654 2333333 5788888888999999999999553
No 192
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.53 E-value=9.6e-07 Score=95.03 Aligned_cols=165 Identities=20% Similarity=0.274 Sum_probs=94.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCC--CccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~--g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
-|.+||-+||||||||++++..+ |.-. -.+|-.|. -+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~Pn------------LG--------------------------- 199 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPN------------LG--------------------------- 199 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCc------------cc---------------------------
Confidence 36789999999999999999886 4422 23343331 00
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCccc---chH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA---NSD 203 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~---~~d 203 (827)
.+++ .....+++-|.||++..+..+- -+-.--.++|.+.. +++.|++....-. -.+
T Consensus 200 ------------vV~~--~~~~sfv~ADIPGLIEGAs~G~------GLG~~FLrHIERt~-vL~hviD~s~~~~~dp~~~ 258 (369)
T COG0536 200 ------------VVRV--DGGESFVVADIPGLIEGASEGV------GLGLRFLRHIERTR-VLLHVIDLSPIDGRDPIED 258 (369)
T ss_pred ------------EEEe--cCCCcEEEecCcccccccccCC------CccHHHHHHHHhhh-eeEEEEecCcccCCCHHHH
Confidence 1222 2223589999999997754321 11112235666665 6777776653221 223
Q ss_pred HHHHHHH---hCCC--CCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCchhhhhhhhHHHHHHHHHhhcc
Q 003355 204 ALQIAGI---ADPD--GYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFR 278 (827)
Q Consensus 204 ~l~la~~---~dp~--g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~ 278 (827)
...+..+ +.+. .++.++|+||+|+....+.... +.+.+.. .+.
T Consensus 259 ~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~-----------------------------~~~~l~~---~~~ 306 (369)
T COG0536 259 YQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEE-----------------------------LKKALAE---ALG 306 (369)
T ss_pred HHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHH-----------------------------HHHHHHH---hcC
Confidence 2333333 3332 6899999999997654332221 1122221 122
Q ss_pred CCCcc-ccccccCCchHHHHHHHHHHHHHH
Q 003355 279 SRPVY-NGLADRCGVPQLAKKLNQILVQHI 307 (827)
Q Consensus 279 ~~~~~-~~~~~~~Gi~~L~~~L~~~L~~~I 307 (827)
+...| -+...+.|+..|...+.+++.+..
T Consensus 307 ~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 307 WEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred CCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 22222 555678899999988888776543
No 193
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.53 E-value=3.2e-07 Score=105.31 Aligned_cols=80 Identities=24% Similarity=0.298 Sum_probs=46.4
Q ss_pred cccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCC--cccchH--HHHH
Q 003355 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS--DLANSD--ALQI 207 (827)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~--d~~~~d--~l~l 207 (827)
|++-+.....+.. ....++||||||..+ .+..++ ..+...+ ++++|++++. .+..+. .+.+
T Consensus 69 G~T~d~~~~~~~~-~~~~i~liDtpG~~~------------~~~~~~-~~~~~aD-~~ilVvDa~~~~~~~~~~~~~~~~ 133 (425)
T PRK12317 69 GVTIDLAHKKFET-DKYYFTIVDCPGHRD------------FVKNMI-TGASQAD-AAVLVVAADDAGGVMPQTREHVFL 133 (425)
T ss_pred CccceeeeEEEec-CCeEEEEEECCCccc------------chhhHh-hchhcCC-EEEEEEEcccCCCCCcchHHHHHH
Confidence 4444444444443 235799999999531 222332 3345565 6666777776 444433 2334
Q ss_pred HHHhCCCC-CceEEeeecCCCCC
Q 003355 208 AGIADPDG-YRTIGIITKLDIMD 229 (827)
Q Consensus 208 a~~~dp~g-~rtIgVlTK~D~~~ 229 (827)
++.. + .+.|+|+||+|+.+
T Consensus 134 ~~~~---~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 134 ARTL---GINQLIVAINKMDAVN 153 (425)
T ss_pred HHHc---CCCeEEEEEEcccccc
Confidence 4333 4 46899999999986
No 194
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.53 E-value=5e-07 Score=107.16 Aligned_cols=135 Identities=17% Similarity=0.229 Sum_probs=74.2
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 44 ~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
.+..|.|+++|..++|||||||+|.|..+.-...|-.|+.. + .+ +.+...+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~i------g--------~~-------~~~~~~~-------- 53 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHI------G--------AT-------EVPIDVI-------- 53 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEee------c--------ee-------ecccccc--------
Confidence 35679999999999999999999998754222222222111 0 00 0000000
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d 203 (827)
....+. ....+..++. .+.++|+||||.. .+..+...++...+ ++++|+++..++..+.
T Consensus 54 ~~~~~~----~~~~~~~~~~---~~~i~~iDTPG~e-------------~f~~~~~~~~~~aD-~~IlVvDa~~g~~~qt 112 (586)
T PRK04004 54 EKIAGP----LKKPLPIKLK---IPGLLFIDTPGHE-------------AFTNLRKRGGALAD-IAILVVDINEGFQPQT 112 (586)
T ss_pred ccccce----eccccccccc---cCCEEEEECCChH-------------HHHHHHHHhHhhCC-EEEEEEECCCCCCHhH
Confidence 000000 0000011111 2348999999953 23344455666666 5566667776554433
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
...+..+...+.++|+|+||+|+..
T Consensus 113 -~e~i~~~~~~~vpiIvviNK~D~~~ 137 (586)
T PRK04004 113 -IEAINILKRRKTPFVVAANKIDRIP 137 (586)
T ss_pred -HHHHHHHHHcCCCEEEEEECcCCch
Confidence 3333444445789999999999863
No 195
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.52 E-value=5.3e-07 Score=109.57 Aligned_cols=134 Identities=14% Similarity=0.171 Sum_probs=80.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.+..|+|+|..++|||||+|+|++..- ...+ . +.. .+|....|+....+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g------~~~~-~------~~~----------~~g~~~~D~~~~e~-------- 57 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTG------RIHK-I------GEV----------HDGAATMDWMEQEK-------- 57 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCC------Cccc-c------ccc----------cCCccccCCCHHHH--------
Confidence 456899999999999999999986421 0000 0 000 00111222211111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
..+++-+.....+.+.+ ..++||||||..+- ...+..++...+ ++++|+++..+...++ .
T Consensus 58 ----~rgiti~~~~~~~~~~~-~~i~liDTPG~~~~-------------~~~~~~~l~~~D-~~ilVvda~~g~~~~~-~ 117 (689)
T TIGR00484 58 ----ERGITITSAATTVFWKG-HRINIIDTPGHVDF-------------TVEVERSLRVLD-GAVAVLDAVGGVQPQS-E 117 (689)
T ss_pred ----hcCCCEecceEEEEECC-eEEEEEECCCCcch-------------hHHHHHHHHHhC-EEEEEEeCCCCCChhH-H
Confidence 12334333344444433 47999999998532 113456777666 6666677776665544 4
Q ss_pred HHHHHhCCCCCceEEeeecCCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+++.+...+.++|+|+||+|+...
T Consensus 118 ~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 118 TVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCC
Confidence 5666666668999999999999853
No 196
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.52 E-value=9.3e-07 Score=91.24 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=23.3
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
|.|+++|..+||||||++.|.+..+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~ 25 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY 25 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999998865
No 197
>PLN03127 Elongation factor Tu; Provisional
Probab=98.51 E-value=4e-07 Score=104.74 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=77.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.-..|+++|..++|||||+++|+|.. ...+.. . .-.|... |. ..+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~-~~~g~~--~-------------~~~~~~~---------D~--~~~-------- 104 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVL-AEEGKA--K-------------AVAFDEI---------DK--APE-------- 104 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHH-HHhhcc--c-------------ceeeccc---------cC--Chh--------
Confidence 34569999999999999999998642 011110 0 0000000 00 000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
....+++-+.....+... ...++||||||+. ..+..++... ...+ ++++|+++...+..++ .
T Consensus 105 --E~~rGiTi~~~~~~~~~~-~~~i~~iDtPGh~------------~f~~~~~~g~-~~aD-~allVVda~~g~~~qt-~ 166 (447)
T PLN03127 105 --EKARGITIATAHVEYETA-KRHYAHVDCPGHA------------DYVKNMITGA-AQMD-GGILVVSAPDGPMPQT-K 166 (447)
T ss_pred --HhhcCceeeeeEEEEcCC-CeEEEEEECCCcc------------chHHHHHHHH-hhCC-EEEEEEECCCCCchhH-H
Confidence 112344444444554443 3478999999974 1455555433 3454 6777788887766554 4
Q ss_pred HHHHHhCCCCCc-eEEeeecCCCCC
Q 003355 206 QIAGIADPDGYR-TIGIITKLDIMD 229 (827)
Q Consensus 206 ~la~~~dp~g~r-tIgVlTK~D~~~ 229 (827)
.++..+...+.+ .|+|+||+|+++
T Consensus 167 e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 167 EHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHHcCCCeEEEEEEeeccCC
Confidence 555556656777 478999999986
No 198
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.51 E-value=1.4e-06 Score=103.78 Aligned_cols=133 Identities=16% Similarity=0.242 Sum_probs=74.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..-.|++||..++|||||+++|+... |..+++- . +..+.|..+..++
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~-------------~-------~~~~lD~~~~Ere------- 52 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELT------GTLSERE-------------M-------KAQVLDSMDLERE------- 52 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhc------CCCcccc-------------c-------ccccccCchHHhh-------
Confidence 34579999999999999999998642 1111110 0 0111111111100
Q ss_pred hcCCCCcccccceEEEEec--CCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH
Q 003355 126 EAGGNKGVSDKQIRLKIFS--PHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~--p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d 203 (827)
.+..+....+.+.... .....++||||||..+ +...+..|+...+ .+|+|+++......+.
T Consensus 53 ---rGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d-------------F~~~v~~sl~~aD-~aILVVDas~gv~~qt 115 (600)
T PRK05433 53 ---RGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD-------------FSYEVSRSLAACE-GALLVVDASQGVEAQT 115 (600)
T ss_pred ---cCCcccccEEEEEEEccCCCcEEEEEEECCCcHH-------------HHHHHHHHHHHCC-EEEEEEECCCCCCHHH
Confidence 0112222333333321 1234689999999652 2344567788777 4555667776655444
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
. .....+...+.++|+|+||+|+..
T Consensus 116 ~-~~~~~~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 116 L-ANVYLALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred H-HHHHHHHHCCCCEEEEEECCCCCc
Confidence 2 222222334688999999999864
No 199
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.51 E-value=1.7e-06 Score=86.97 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|||+.++|||||++.+++..|
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f 26 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF 26 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 699999999999999999998765
No 200
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.51 E-value=5.9e-06 Score=90.89 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=29.1
Q ss_pred EEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEE
Q 003355 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~ 86 (827)
|++||.+|+|||||+|+|++..+-....-.||+-|+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~ 37 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNV 37 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcccccee
Confidence 6899999999999999999987533333457777754
No 201
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.50 E-value=4.4e-07 Score=83.92 Aligned_cols=103 Identities=25% Similarity=0.397 Sum_probs=68.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.+|++||..++||+||.++|-|.+.+++.+..+ +|.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQAv----------------e~~---------------------------- 37 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAV----------------EFN---------------------------- 37 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhccccee----------------ecc----------------------------
Confidence 479999999999999999999999887655421 111
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l 207 (827)
+=-.|||||-.... ..+-..+.--..+. ++|..|..++...+.-.
T Consensus 38 ---------------------d~~~IDTPGEy~~~---------~~~Y~aL~tt~~da-dvi~~v~~and~~s~f~---- 82 (148)
T COG4917 38 ---------------------DKGDIDTPGEYFEH---------PRWYHALITTLQDA-DVIIYVHAANDPESRFP---- 82 (148)
T ss_pred ---------------------CccccCCchhhhhh---------hHHHHHHHHHhhcc-ceeeeeecccCccccCC----
Confidence 11369999964221 12211122223344 47888888887765533
Q ss_pred HHHhCCCCCceEEeeecCCCCC
Q 003355 208 AGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 208 a~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..-.+..-+++|||+||.|+..
T Consensus 83 p~f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 83 PGFLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred cccccccccceEEEEecccccc
Confidence 2223445577999999999995
No 202
>CHL00071 tufA elongation factor Tu
Probab=98.50 E-value=4.9e-07 Score=103.26 Aligned_cols=68 Identities=21% Similarity=0.180 Sum_probs=46.2
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCc-eEEeeecCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~r-tIgVlTK~D 226 (827)
..++||||||.. ..+..++ .-+...+ ++++|+++...+..++ ..++..+...|.+ .|+|+||+|
T Consensus 75 ~~~~~iDtPGh~------------~~~~~~~-~~~~~~D-~~ilVvda~~g~~~qt-~~~~~~~~~~g~~~iIvvvNK~D 139 (409)
T CHL00071 75 RHYAHVDCPGHA------------DYVKNMI-TGAAQMD-GAILVVSAADGPMPQT-KEHILLAKQVGVPNIVVFLNKED 139 (409)
T ss_pred eEEEEEECCChH------------HHHHHHH-HHHHhCC-EEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEEEccC
Confidence 468999999942 2444443 3345565 6677778887776655 4555555556777 678999999
Q ss_pred CCCC
Q 003355 227 IMDR 230 (827)
Q Consensus 227 ~~~~ 230 (827)
+.+.
T Consensus 140 ~~~~ 143 (409)
T CHL00071 140 QVDD 143 (409)
T ss_pred CCCH
Confidence 9864
No 203
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.48 E-value=1.6e-06 Score=86.64 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+++|..++|||||+..+++..|
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~ 25 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999987765
No 204
>PRK00007 elongation factor G; Reviewed
Probab=98.47 E-value=9.5e-07 Score=107.29 Aligned_cols=135 Identities=15% Similarity=0.151 Sum_probs=81.6
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.+..|+|+|..++|||||+|+|+...--.+..|.+ . .|....|+....+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v-------------~----------~~~~~~D~~~~E~-------- 57 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEV-------------H----------DGAATMDWMEQEQ-------- 57 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccc-------------c----------CCcccCCCCHHHH--------
Confidence 45689999999999999999997431000000000 0 0111222222111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
..+++-+.....+.+. ...++||||||..+ ... -+...+...+ .+++|+++..++..++ .
T Consensus 58 ----~rg~ti~~~~~~~~~~-~~~~~liDTPG~~~------------f~~-ev~~al~~~D-~~vlVvda~~g~~~qt-~ 117 (693)
T PRK00007 58 ----ERGITITSAATTCFWK-DHRINIIDTPGHVD------------FTI-EVERSLRVLD-GAVAVFDAVGGVEPQS-E 117 (693)
T ss_pred ----hCCCCEeccEEEEEEC-CeEEEEEeCCCcHH------------HHH-HHHHHHHHcC-EEEEEEECCCCcchhh-H
Confidence 1334444434444443 35799999999642 111 1445555555 6666777887776666 5
Q ss_pred HHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
.+++.+...+.+.|+|+||+|+.+..
T Consensus 118 ~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 118 TVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 67777777789999999999998643
No 205
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.46 E-value=1.1e-06 Score=90.40 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=42.9
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH---HHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI---AGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l---a~~~dp~g~rtIgVlTK 224 (827)
..+.|+||||- +..+.+...|++..+++|++ .+.....+-..+..+ ++... .+.+.|+|.||
T Consensus 44 ~~l~iwDt~G~-------------e~~~~l~~~~~~~ad~~ilV-~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK 108 (200)
T smart00176 44 IRFNVWDTAGQ-------------EKFGGLRDGYYIQGQCAIIM-FDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNK 108 (200)
T ss_pred EEEEEEECCCc-------------hhhhhhhHHHhcCCCEEEEE-EECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 36899999994 24566777899988855544 455443322222223 33333 36899999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
+|+..
T Consensus 109 ~Dl~~ 113 (200)
T smart00176 109 VDVKD 113 (200)
T ss_pred ccccc
Confidence 99864
No 206
>PRK12739 elongation factor G; Reviewed
Probab=98.45 E-value=6.7e-07 Score=108.64 Aligned_cols=134 Identities=16% Similarity=0.189 Sum_probs=81.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.+..|+|||..++|||||+|+|+...--....| ... .|....|+....+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~-------------~v~----------~~~~~~D~~~~E~-------- 55 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIG-------------EVH----------DGAATMDWMEQEQ-------- 55 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccc-------------ccc----------CCccccCCChhHh--------
Confidence 456899999999999999999985420000000 000 0111222211111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
..+++-+.....+.+ ....++||||||+.+ +...+..++...+ .+++|+++..+...++ .
T Consensus 56 ----~rgiti~~~~~~~~~-~~~~i~liDTPG~~~-------------f~~e~~~al~~~D-~~ilVvDa~~g~~~qt-~ 115 (691)
T PRK12739 56 ----ERGITITSAATTCFW-KGHRINIIDTPGHVD-------------FTIEVERSLRVLD-GAVAVFDAVSGVEPQS-E 115 (691)
T ss_pred ----hcCCCccceeEEEEE-CCEEEEEEcCCCHHH-------------HHHHHHHHHHHhC-eEEEEEeCCCCCCHHH-H
Confidence 123444433344433 235799999999642 1223566777776 6677778887776655 4
Q ss_pred HHHHHhCCCCCceEEeeecCCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+++.+...+.+.|+|+||+|+...
T Consensus 116 ~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 116 TVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCC
Confidence 6677777778999999999999853
No 207
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.45 E-value=4.2e-06 Score=84.06 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=40.7
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH----HHHHHHHhCCCCCceEEeee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD----ALQIAGIADPDGYRTIGIIT 223 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d----~l~la~~~dp~g~rtIgVlT 223 (827)
..+.|+||||-. ....+...|++..+++|+++. .+..-+-.. .+...+...+ ..++|+|.|
T Consensus 49 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~d-~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgn 113 (174)
T cd01871 49 VNLGLWDTAGQE-------------DYDRLRPLSYPQTDVFLICFS-LVSPASFENVRAKWYPEVRHHCP-NTPIILVGT 113 (174)
T ss_pred EEEEEEECCCch-------------hhhhhhhhhcCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEee
Confidence 358899999942 233445568888876665544 332211111 1233333333 589999999
Q ss_pred cCCCCCC
Q 003355 224 KLDIMDR 230 (827)
Q Consensus 224 K~D~~~~ 230 (827)
|.|+.+.
T Consensus 114 K~Dl~~~ 120 (174)
T cd01871 114 KLDLRDD 120 (174)
T ss_pred ChhhccC
Confidence 9999653
No 208
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.45 E-value=8.4e-06 Score=84.42 Aligned_cols=120 Identities=20% Similarity=0.323 Sum_probs=77.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCC--ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g--~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
-+|+|+|..|+|||||+++|++..+ +.+.. +.+..|....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~------------------------------------- 47 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTI------------------------------------- 47 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEE-------------------------------------
Confidence 4799999999999999999999875 32221 1111111000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcc---cch
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---ANS 202 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---~~~ 202 (827)
........+.++||+|. +.++.+...|...++.+++++......- ...
T Consensus 48 ----------------~~~~~~~~~~~~Dt~gq-------------~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~ 98 (219)
T COG1100 48 ----------------EPYRRNIKLQLWDTAGQ-------------EEYRSLRPEYYRGANGILIVYDSTLRESSDELTE 98 (219)
T ss_pred ----------------EeCCCEEEEEeecCCCH-------------HHHHHHHHHHhcCCCEEEEEEecccchhhhHHHH
Confidence 00000235889999993 3667788889999997777766554221 122
Q ss_pred HHHHHHHHhCCCCCceEEeeecCCCCCCcccH
Q 003355 203 DALQIAGIADPDGYRTIGIITKLDIMDRGTDA 234 (827)
Q Consensus 203 d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~ 234 (827)
.....++...+...+.|.|.||+|+.......
T Consensus 99 ~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~ 130 (219)
T COG1100 99 EWLEELRELAPDDVPILLVGNKIDLFDEQSSS 130 (219)
T ss_pred HHHHHHHHhCCCCceEEEEecccccccchhHH
Confidence 22344455555568999999999999765433
No 209
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.45 E-value=6.3e-06 Score=86.80 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=69.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..-.|+|||+.++|||||++.+++..| +.... +|-.. .+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~-pTi~~------------~~~-------------------------- 51 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY-PETYV-PTVFE------------NYT-------------------------- 51 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC-CCCcC-Cceee------------eeE--------------------------
Confidence 345799999999999999999998875 32211 11000 000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch---
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--- 202 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--- 202 (827)
..+.+. .....|.|+||+|- +..+.+...|++..+.+||+ .+.....+-.
T Consensus 52 ------------~~i~~~-~~~v~l~iwDTaG~-------------e~~~~~~~~~~~~ad~vIlV-yDit~~~Sf~~~~ 104 (232)
T cd04174 52 ------------AGLETE-EQRVELSLWDTSGS-------------PYYDNVRPLCYSDSDAVLLC-FDISRPETVDSAL 104 (232)
T ss_pred ------------EEEEEC-CEEEEEEEEeCCCc-------------hhhHHHHHHHcCCCcEEEEE-EECCChHHHHHHH
Confidence 011111 11236899999993 24556666799988855554 4444322211
Q ss_pred -HHHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 203 -DALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 203 -d~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+...++...+ +.++|+|.||.|+.+
T Consensus 105 ~~w~~~i~~~~~-~~piilVgNK~DL~~ 131 (232)
T cd04174 105 KKWKAEIMDYCP-STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHHHHhCC-CCCEEEEEECccccc
Confidence 22333444444 578999999999864
No 210
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.43 E-value=9.8e-07 Score=100.63 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=49.8
Q ss_pred cccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH--HHHHHH
Q 003355 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--ALQIAG 209 (827)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d--~l~la~ 209 (827)
+++-+.....+... ...++||||||.. ..+..++. -+...+ ++|+|+++..++..+. .+.+++
T Consensus 65 giTid~~~~~~~~~-~~~~~liDtPGh~------------~f~~~~~~-~~~~aD-~allVVda~~G~~~qt~~~~~~~~ 129 (406)
T TIGR02034 65 GITIDVAYRYFSTD-KRKFIVADTPGHE------------QYTRNMAT-GASTAD-LAVLLVDARKGVLEQTRRHSYIAS 129 (406)
T ss_pred CcCeEeeeEEEccC-CeEEEEEeCCCHH------------HHHHHHHH-HHhhCC-EEEEEEECCCCCccccHHHHHHHH
Confidence 44444444444343 3478999999942 24444443 345565 6666778877765443 244555
Q ss_pred HhCCCCCceEEeeecCCCCCC
Q 003355 210 IADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 210 ~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+. ..+.|+|+||+|+.+.
T Consensus 130 ~~~--~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 130 LLG--IRHVVLAVNKMDLVDY 148 (406)
T ss_pred HcC--CCcEEEEEEecccccc
Confidence 443 2468889999999853
No 211
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=3.4e-06 Score=86.19 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=57.0
Q ss_pred ccEEEEeCCCCCcCCC-CCCchHHHHHHHHHHHHHhcCC--------------ccEEEeecCCCCcccchHHHHHHHHhC
Q 003355 148 LDITLVDLPGITKVPV-GEQPADIEARIRTMIMSYIKQP--------------SCLILAVTPANSDLANSDALQIAGIAD 212 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~-~~q~~di~~~i~~lv~~yi~~~--------------~~iIL~V~~a~~d~~~~d~l~la~~~d 212 (827)
.+|+++||||+.+--. .+-.+-|.+.|.+.-.+|+++. +|++.++-+....+.--| +.+.+.+.
T Consensus 104 lkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplD-ieflkrLt 182 (336)
T KOG1547|consen 104 LKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLD-IEFLKRLT 182 (336)
T ss_pred EEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCccc-HHHHHHHh
Confidence 3689999999965422 2224567777777777777632 677888878777777767 45566555
Q ss_pred CCCCceEEeeecCCCCC
Q 003355 213 PDGYRTIGIITKLDIMD 229 (827)
Q Consensus 213 p~g~rtIgVlTK~D~~~ 229 (827)
.. .++|-|+-|.|.+.
T Consensus 183 ~v-vNvvPVIakaDtlT 198 (336)
T KOG1547|consen 183 EV-VNVVPVIAKADTLT 198 (336)
T ss_pred hh-heeeeeEeeccccc
Confidence 33 78999999999985
No 212
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.41 E-value=5.8e-06 Score=84.31 Aligned_cols=115 Identities=18% Similarity=0.199 Sum_probs=67.3
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
-+|+|+|+.++|||||+..++...| +... .+|-.. .+.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~-~~t~~~------------~~~---------------------------- 41 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY-IPTVFD------------NYS---------------------------- 41 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC-CCceEe------------eeE----------------------------
Confidence 3799999999999999999998765 2211 111000 000
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~--- 204 (827)
..+.+. .....+.|+||||- +..+.+...|++..+++|+++ +.+..-+-..+
T Consensus 42 ----------~~~~~~-~~~~~l~i~Dt~G~-------------e~~~~l~~~~~~~a~~~ilvy-dit~~~Sf~~~~~~ 96 (191)
T cd01875 42 ----------AQTAVD-GRTVSLNLWDTAGQ-------------EEYDRLRTLSYPQTNVFIICF-SIASPSSYENVRHK 96 (191)
T ss_pred ----------EEEEEC-CEEEEEEEEECCCc-------------hhhhhhhhhhccCCCEEEEEE-ECCCHHHHHHHHHH
Confidence 011111 12246899999993 245566677899888666654 33322111111
Q ss_pred -HHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 205 -LQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 -l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
....+...+ +.++|+|.||.|+.+.
T Consensus 97 w~~~i~~~~~-~~piilvgNK~DL~~~ 122 (191)
T cd01875 97 WHPEVCHHCP-NVPILLVGTKKDLRND 122 (191)
T ss_pred HHHHHHhhCC-CCCEEEEEeChhhhcC
Confidence 122222223 5899999999999653
No 213
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.41 E-value=5.7e-07 Score=93.89 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=45.4
Q ss_pred cccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc-------ccchHH
Q 003355 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-------LANSDA 204 (827)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-------~~~~d~ 204 (827)
+++.+.....+.. ....++||||||..+ .+.. +..++...+ ++++|+++... ...+.
T Consensus 62 g~T~d~~~~~~~~-~~~~i~liDtpG~~~------------~~~~-~~~~~~~~d-~~i~VvDa~~~~~~~~~~~~~~~- 125 (219)
T cd01883 62 GVTIDVGLAKFET-EKYRFTILDAPGHRD------------FVPN-MITGASQAD-VAVLVVDARKGEFEAGFEKGGQT- 125 (219)
T ss_pred ccCeecceEEEee-CCeEEEEEECCChHH------------HHHH-HHHHhhhCC-EEEEEEECCCCccccccccccch-
Confidence 4444444444433 335799999999531 2222 234556666 56666676652 22222
Q ss_pred HHHHHHhCCCC-CceEEeeecCCCCC
Q 003355 205 LQIAGIADPDG-YRTIGIITKLDIMD 229 (827)
Q Consensus 205 l~la~~~dp~g-~rtIgVlTK~D~~~ 229 (827)
..........+ .+.|+|+||+|+..
T Consensus 126 ~~~~~~~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 126 REHALLARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred HHHHHHHHHcCCCeEEEEEEcccccc
Confidence 22222222233 67899999999983
No 214
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.41 E-value=1.9e-06 Score=102.36 Aligned_cols=128 Identities=19% Similarity=0.259 Sum_probs=73.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC-CCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRD-FLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~-~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
-.|++||..++|||||+++|+... .+.. .+.++. ...|.....+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~-~~~v~~-------------------------~~~D~~~~Er--------- 46 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRA-NEAVAE-------------------------RVMDSNDLER--------- 46 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcc-ccccee-------------------------ecccCchHHH---------
Confidence 369999999999999999998531 1111 111110 0111111111
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
..+++-..-...+.+. ...++||||||.. .+...+..+++..+.+ ++|+++..+...+. ..
T Consensus 47 ---erGiTI~~~~~~v~~~-~~kinlIDTPGh~-------------DF~~ev~~~l~~aD~a-lLVVDa~~G~~~qT-~~ 107 (594)
T TIGR01394 47 ---ERGITILAKNTAIRYN-GTKINIVDTPGHA-------------DFGGEVERVLGMVDGV-LLLVDASEGPMPQT-RF 107 (594)
T ss_pred ---hCCccEEeeeEEEEEC-CEEEEEEECCCHH-------------HHHHHHHHHHHhCCEE-EEEEeCCCCCcHHH-HH
Confidence 1233322222333332 3579999999953 2334456788888755 45556665554433 33
Q ss_pred HHHHhCCCCCceEEeeecCCCCC
Q 003355 207 IAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 207 la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+++.+...+.+.|+|+||+|+.+
T Consensus 108 ~l~~a~~~~ip~IVviNKiD~~~ 130 (594)
T TIGR01394 108 VLKKALELGLKPIVVINKIDRPS 130 (594)
T ss_pred HHHHHHHCCCCEEEEEECCCCCC
Confidence 44444446789999999999865
No 215
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.39 E-value=2.4e-06 Score=102.95 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=42.5
Q ss_pred cccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch--HHHHHHHHhCCCCCceEEeeec
Q 003355 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 147 ~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--d~l~la~~~dp~g~rtIgVlTK 224 (827)
...++||||||.. ..+..++. -+...+ ++|+|+++...+..+ +.+.++..+. -.+.|+|+||
T Consensus 103 ~~~~~liDtPG~~------------~f~~~~~~-~~~~aD-~~llVvda~~g~~~~t~e~~~~~~~~~--~~~iivvvNK 166 (632)
T PRK05506 103 KRKFIVADTPGHE------------QYTRNMVT-GASTAD-LAIILVDARKGVLTQTRRHSFIASLLG--IRHVVLAVNK 166 (632)
T ss_pred CceEEEEECCChH------------HHHHHHHH-HHHhCC-EEEEEEECCCCccccCHHHHHHHHHhC--CCeEEEEEEe
Confidence 3468999999942 23344443 355565 667777887665443 2234454442 1567889999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
+|+.+
T Consensus 167 ~D~~~ 171 (632)
T PRK05506 167 MDLVD 171 (632)
T ss_pred ccccc
Confidence 99985
No 216
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.38 E-value=2.2e-06 Score=99.52 Aligned_cols=148 Identities=17% Similarity=0.202 Sum_probs=76.6
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCcc--ccChHHHHHHHHH
Q 003355 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR--FYDFSEIRREIQA 121 (827)
Q Consensus 44 ~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~--~~d~~~i~~~i~~ 121 (827)
.-...+|+|||..++|||||+++|+... |..++.-+ ..-.. + ....|+. -.++.-+.+...+
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~------g~i~~~~~----~~~~~--~----~~~~g~~~~~~~~a~~~D~~~e 87 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDT------KQIYEDQL----ASLHN--D----SKRHGTQGEKLDLALLVDGLQA 87 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhc------CCCcHHHH----HHHHH--H----HHhcCCCccccchhhhccCChH
Confidence 3466899999999999999999998653 11111000 00000 0 0000110 0000001000011
Q ss_pred hhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccc
Q 003355 122 QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN 201 (827)
Q Consensus 122 ~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~ 201 (827)
+ ...+++-+.-...... ....++||||||.. .....++.. +...+ ++|+|+++...+..
T Consensus 88 E------r~rgiTid~~~~~~~~-~~~~i~~iDTPGh~------------~f~~~~~~~-l~~aD-~allVVDa~~G~~~ 146 (474)
T PRK05124 88 E------REQGITIDVAYRYFST-EKRKFIIADTPGHE------------QYTRNMATG-ASTCD-LAILLIDARKGVLD 146 (474)
T ss_pred H------hhcCCCeEeeEEEecc-CCcEEEEEECCCcH------------HHHHHHHHH-HhhCC-EEEEEEECCCCccc
Confidence 1 1134444332222322 34579999999932 244455544 45555 66777788776644
Q ss_pred h--HHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 202 S--DALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 202 ~--d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+ +.+.++..+. -.+.|+|+||+|+.+.
T Consensus 147 qt~~~~~l~~~lg--~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 147 QTRRHSFIATLLG--IKHLVVAVNKMDLVDY 175 (474)
T ss_pred cchHHHHHHHHhC--CCceEEEEEeeccccc
Confidence 3 2244555543 2468899999999853
No 217
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.37 E-value=1.7e-06 Score=84.99 Aligned_cols=115 Identities=18% Similarity=0.277 Sum_probs=68.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
+|+|+|+.++|||||++.+.+..| +.... .|-..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~-~t~~~-------------------------------------------- 34 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYI-PTIGI-------------------------------------------- 34 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSE-TTSSE--------------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccc-ccccc--------------------------------------------
Confidence 589999999999999999998875 32221 11100
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch---HHH
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DAL 205 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---d~l 205 (827)
......+.+. .....+.|+|++|-. ....+...++++.+.+|++. +.+..-+-. .++
T Consensus 35 -----~~~~~~~~~~-~~~~~l~i~D~~g~~-------------~~~~~~~~~~~~~~~~ii~f-d~~~~~S~~~~~~~~ 94 (162)
T PF00071_consen 35 -----DSYSKEVSID-GKPVNLEIWDTSGQE-------------RFDSLRDIFYRNSDAIIIVF-DVTDEESFENLKKWL 94 (162)
T ss_dssp -----EEEEEEEEET-TEEEEEEEEEETTSG-------------GGHHHHHHHHTTESEEEEEE-ETTBHHHHHTHHHHH
T ss_pred -----cccccccccc-ccccccccccccccc-------------cccccccccccccccccccc-ccccccccccccccc
Confidence 0000011111 122368999999943 22334456777777655554 443322211 234
Q ss_pred HHHHHhCCCCCceEEeeecCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.......+...+.++|.||.|+.+
T Consensus 95 ~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 95 EEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHHHHHSTTTSEEEEEEETTTGGG
T ss_pred ccccccccccccceeeeccccccc
Confidence 445555665689999999999886
No 218
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.37 E-value=3.3e-06 Score=99.01 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=76.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..-.|+|+|..++|||||+|+|+-.. |..++... +. .++ .+ .....|+.++.++
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~------g~i~~~g~-v~--~~~----~~------~~~~~D~~~~E~~------- 62 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFG------GAIQEAGT-VK--GRK----SG------RHATSDWMEMEKQ------- 62 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC------CCccccce-ee--ccc----cC------ccccCCCcHHHHh-------
Confidence 45679999999999999999997321 11111110 00 000 00 0011222222111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
.++|-..-.+.+.+. ...++||||||..+ +...+..++...+ .+++|+++..++..+. .
T Consensus 63 -----rgiSi~~~~~~~~~~-~~~inliDTPG~~d-------------f~~~~~~~l~~aD-~aIlVvDa~~gv~~~t-~ 121 (526)
T PRK00741 63 -----RGISVTSSVMQFPYR-DCLINLLDTPGHED-------------FSEDTYRTLTAVD-SALMVIDAAKGVEPQT-R 121 (526)
T ss_pred -----hCCceeeeeEEEEEC-CEEEEEEECCCchh-------------hHHHHHHHHHHCC-EEEEEEecCCCCCHHH-H
Confidence 223322222333332 24689999999642 2233456777776 4555566666654433 4
Q ss_pred HHHHHhCCCCCceEEeeecCCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+.+.....+.++|+|+||+|+...
T Consensus 122 ~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 122 KLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HHHHHHHhcCCCEEEEEECCccccc
Confidence 5555566668999999999998753
No 219
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.37 E-value=3.1e-06 Score=88.55 Aligned_cols=114 Identities=14% Similarity=0.183 Sum_probs=66.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
+|+|||+.++||||||+.+++..| |.... +|-.. .|.
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~-pTi~~------------~~~----------------------------- 39 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYV-PTVFE------------NYT----------------------------- 39 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccC-Ccccc------------ceE-----------------------------
Confidence 699999999999999999998875 32221 11000 000
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH----
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---- 204 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~---- 204 (827)
..+.+. .....|.||||+|-. ....+...|++..+.+||+ .+.....+-..+
T Consensus 40 ---------~~~~~~-~~~v~L~iwDt~G~e-------------~~~~l~~~~~~~~d~illv-fdis~~~Sf~~i~~~w 95 (222)
T cd04173 40 ---------ASFEID-KRRIELNMWDTSGSS-------------YYDNVRPLAYPDSDAVLIC-FDISRPETLDSVLKKW 95 (222)
T ss_pred ---------EEEEEC-CEEEEEEEEeCCCcH-------------HHHHHhHHhccCCCEEEEE-EECCCHHHHHHHHHHH
Confidence 011111 122368899999932 3344555688888855555 444432221121
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
....+...+ +.++|+|.||.|+.+.
T Consensus 96 ~~~~~~~~~-~~piiLVgnK~DL~~~ 120 (222)
T cd04173 96 QGETQEFCP-NAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHHhhCC-CCCEEEEEECcccccc
Confidence 112223333 5899999999999753
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=98.36 E-value=2.1e-06 Score=97.63 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=72.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
-.|+++|..++|||||+++|++..- ..+.+ ....|. . .|. ..+|.
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~~~-~~g~~---------------~~~~~~-~--------~d~--~~~E~-------- 57 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLA-ERGLN---------------QAKDYD-S--------IDA--APEEK-------- 57 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhhhh-hhccc---------------cccchh-h--------hcC--CHHHH--------
Confidence 3599999999999999999997521 11000 000000 0 000 00110
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l 207 (827)
..+++-+...+.... ....++||||||.. +.+..++.. +...+ ++++|+++..++..++ ...
T Consensus 58 --~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~------------~f~~~~~~~-~~~~d-~~llVvd~~~g~~~~t-~~~ 119 (394)
T PRK12736 58 --ERGITINTAHVEYET-EKRHYAHVDCPGHA------------DYVKNMITG-AAQMD-GAILVVAATDGPMPQT-REH 119 (394)
T ss_pred --hcCccEEEEeeEecC-CCcEEEEEECCCHH------------HHHHHHHHH-HhhCC-EEEEEEECCCCCchhH-HHH
Confidence 123333333333322 33478999999942 244444333 34555 6666777877665544 344
Q ss_pred HHHhCCCCCc-eEEeeecCCCCC
Q 003355 208 AGIADPDGYR-TIGIITKLDIMD 229 (827)
Q Consensus 208 a~~~dp~g~r-tIgVlTK~D~~~ 229 (827)
+..+...|.+ .|+|+||+|+.+
T Consensus 120 ~~~~~~~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 120 ILLARQVGVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHHHcCCCEEEEEEEecCCcc
Confidence 4555555677 578899999985
No 221
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=6.4e-06 Score=78.15 Aligned_cols=165 Identities=21% Similarity=0.247 Sum_probs=104.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
.|.|+|+.++||+|+|-..+|..|-|.-. .+- |
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afv-------------sTv------------G---------------------- 55 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFV-------------STV------------G---------------------- 55 (193)
T ss_pred eEEEEccCCccchhhhHHhhcccccccee-------------eee------------e----------------------
Confidence 79999999999999999999998743100 000 0
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcc--cchHHHH
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--ANSDALQ 206 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~~d~l~ 206 (827)
+..++.++ ..+....+|.++||.|. +..+.++..|++.+..+||+....|..- +-++...
T Consensus 56 ----idFKvKTv-yr~~kRiklQiwDTagq-------------EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~t 117 (193)
T KOG0093|consen 56 ----IDFKVKTV-YRSDKRIKLQIWDTAGQ-------------ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWIT 117 (193)
T ss_pred ----eeEEEeEe-eecccEEEEEEEecccc-------------hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHH
Confidence 00000000 01122346899999993 4678889999999999999976555432 2233344
Q ss_pred HHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCchhhhhhhhHHHHHHHHHhhccCCCccccc
Q 003355 207 IAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGL 286 (827)
Q Consensus 207 la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~~~~~ 286 (827)
..+.+.-...++|+|.||+|+-++..-.. +....+.+.+ --+||.+ +.
T Consensus 118 qIktysw~naqvilvgnKCDmd~eRvis~-------------------------e~g~~l~~~L--GfefFEt-----Sa 165 (193)
T KOG0093|consen 118 QIKTYSWDNAQVILVGNKCDMDSERVISH-------------------------ERGRQLADQL--GFEFFET-----SA 165 (193)
T ss_pred HheeeeccCceEEEEecccCCccceeeeH-------------------------HHHHHHHHHh--ChHHhhh-----cc
Confidence 45555556789999999999987543110 1122233322 2357776 45
Q ss_pred cccCCchHHHHHHHHHHHHHHHhh
Q 003355 287 ADRCGVPQLAKKLNQILVQHIKAI 310 (827)
Q Consensus 287 ~~~~Gi~~L~~~L~~~L~~~I~~~ 310 (827)
+++..+..+.++|-.++.+.+..+
T Consensus 166 K~NinVk~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 166 KENINVKQVFERLVDIICDKMSES 189 (193)
T ss_pred cccccHHHHHHHHHHHHHHHhhhh
Confidence 677888888888877666555443
No 222
>PRK00049 elongation factor Tu; Reviewed
Probab=98.34 E-value=1.6e-06 Score=98.49 Aligned_cols=68 Identities=22% Similarity=0.194 Sum_probs=44.2
Q ss_pred cccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceE-EeeecC
Q 003355 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTI-GIITKL 225 (827)
Q Consensus 147 ~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtI-gVlTK~ 225 (827)
...++||||||.. ..+..+. .-+...+ ++++|+++...+..++ ..++..+...+.+.| +|+||+
T Consensus 74 ~~~i~~iDtPG~~------------~f~~~~~-~~~~~aD-~~llVVDa~~g~~~qt-~~~~~~~~~~g~p~iiVvvNK~ 138 (396)
T PRK00049 74 KRHYAHVDCPGHA------------DYVKNMI-TGAAQMD-GAILVVSAADGPMPQT-REHILLARQVGVPYIVVFLNKC 138 (396)
T ss_pred CeEEEEEECCCHH------------HHHHHHH-hhhccCC-EEEEEEECCCCCchHH-HHHHHHHHHcCCCEEEEEEeec
Confidence 3468999999953 2444443 3355665 6666777876655544 344455555567875 689999
Q ss_pred CCCC
Q 003355 226 DIMD 229 (827)
Q Consensus 226 D~~~ 229 (827)
|+++
T Consensus 139 D~~~ 142 (396)
T PRK00049 139 DMVD 142 (396)
T ss_pred CCcc
Confidence 9985
No 223
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.34 E-value=2.9e-06 Score=85.71 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=66.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
+|+|+|+.++|||||++.+++..| |.... +|-.. .+.
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~-~t~~~------------~~~----------------------------- 39 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETYV-PTVFE------------NYT----------------------------- 39 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCcC-CceEE------------EEE-----------------------------
Confidence 699999999999999999998865 33221 11100 000
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch----HH
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS----DA 204 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~----d~ 204 (827)
..+.+.+ ....+.|+||||-. ....+...|++..+.+||+ .+.+..-+-. .+
T Consensus 40 ---------~~~~~~~-~~~~l~iwDt~G~~-------------~~~~~~~~~~~~a~~~ilv-fdit~~~Sf~~~~~~w 95 (178)
T cd04131 40 ---------ASFEIDE-QRIELSLWDTSGSP-------------YYDNVRPLCYPDSDAVLIC-FDISRPETLDSVLKKW 95 (178)
T ss_pred ---------EEEEECC-EEEEEEEEECCCch-------------hhhhcchhhcCCCCEEEEE-EECCChhhHHHHHHHH
Confidence 0111211 12368999999932 3344555688888755554 4443322111 22
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
...++...+ ..+.|+|.||.|+.+
T Consensus 96 ~~~i~~~~~-~~~iilVgnK~DL~~ 119 (178)
T cd04131 96 RGEIQEFCP-NTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHHCC-CCCEEEEEEChhhhc
Confidence 233444444 578999999999965
No 224
>PLN03126 Elongation factor Tu; Provisional
Probab=98.33 E-value=3.4e-06 Score=97.75 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=74.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
.-.|+++|..++|||||+++|++... .+..+.+ ..+ ...|... ++
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~-----~i~~~~~-----------~~~---------~~~D~~~--~E-------- 125 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALA-----SMGGSAP-----------KKY---------DEIDAAP--EE-------- 125 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhh-----hhccccc-----------ccc---------ccccCCh--hH--------
Confidence 34589999999999999999997531 0111110 000 0011111 00
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
...+++-+.....+.. ....++||||||.. +.+.+++ .-+...+ +.++|++|..+...+. .+
T Consensus 126 --r~rGiTi~~~~~~~~~-~~~~i~liDtPGh~------------~f~~~~~-~g~~~aD-~ailVVda~~G~~~qt-~e 187 (478)
T PLN03126 126 --RARGITINTATVEYET-ENRHYAHVDCPGHA------------DYVKNMI-TGAAQMD-GAILVVSGADGPMPQT-KE 187 (478)
T ss_pred --HhCCeeEEEEEEEEec-CCcEEEEEECCCHH------------HHHHHHH-HHHhhCC-EEEEEEECCCCCcHHH-HH
Confidence 0123333333333333 23478999999953 2444543 3334555 5566777777765554 34
Q ss_pred HHHHhCCCCCc-eEEeeecCCCCCC
Q 003355 207 IAGIADPDGYR-TIGIITKLDIMDR 230 (827)
Q Consensus 207 la~~~dp~g~r-tIgVlTK~D~~~~ 230 (827)
.+..+...|.+ .|+|+||+|+.+.
T Consensus 188 ~~~~~~~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 188 HILLAKQVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHHcCCCeEEEEEecccccCH
Confidence 44445555676 7789999999863
No 225
>PRK12735 elongation factor Tu; Reviewed
Probab=98.33 E-value=2.5e-06 Score=97.10 Aligned_cols=68 Identities=22% Similarity=0.192 Sum_probs=43.7
Q ss_pred cccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceE-EeeecC
Q 003355 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTI-GIITKL 225 (827)
Q Consensus 147 ~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtI-gVlTK~ 225 (827)
...++||||||.. ..+..++ .-+...+ ++++|+++......+. ...+..+...+.+.| +|+||+
T Consensus 74 ~~~i~~iDtPGh~------------~f~~~~~-~~~~~aD-~~llVvda~~g~~~qt-~e~l~~~~~~gi~~iivvvNK~ 138 (396)
T PRK12735 74 NRHYAHVDCPGHA------------DYVKNMI-TGAAQMD-GAILVVSAADGPMPQT-REHILLARQVGVPYIVVFLNKC 138 (396)
T ss_pred CcEEEEEECCCHH------------HHHHHHH-hhhccCC-EEEEEEECCCCCchhH-HHHHHHHHHcCCCeEEEEEEec
Confidence 3468999999952 2444443 3344555 6666777776665554 344455555567766 579999
Q ss_pred CCCC
Q 003355 226 DIMD 229 (827)
Q Consensus 226 D~~~ 229 (827)
|+.+
T Consensus 139 Dl~~ 142 (396)
T PRK12735 139 DMVD 142 (396)
T ss_pred CCcc
Confidence 9985
No 226
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.33 E-value=3.3e-06 Score=88.65 Aligned_cols=67 Identities=21% Similarity=0.423 Sum_probs=43.7
Q ss_pred CcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCc-eEEeeec
Q 003355 146 HVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITK 224 (827)
Q Consensus 146 ~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~r-tIgVlTK 224 (827)
....+++|||||.. ..++ ..++..+ ++++|+++..++..++ ..+...+...|.+ +|+|+||
T Consensus 81 ~~~~i~~vDtPg~~---------------~~~l-~~ak~aD-vVllviDa~~~~~~~~-~~i~~~l~~~g~p~vi~VvnK 142 (225)
T cd01882 81 KKRRLTFIECPNDI---------------NAMI-DIAKVAD-LVLLLIDASFGFEMET-FEFLNILQVHGFPRVMGVLTH 142 (225)
T ss_pred CCceEEEEeCCchH---------------HHHH-HHHHhcC-EEEEEEecCcCCCHHH-HHHHHHHHHcCCCeEEEEEec
Confidence 34468999999832 1111 2234444 7888888887776655 3556656555666 4569999
Q ss_pred CCCCCC
Q 003355 225 LDIMDR 230 (827)
Q Consensus 225 ~D~~~~ 230 (827)
+|++.+
T Consensus 143 ~D~~~~ 148 (225)
T cd01882 143 LDLFKK 148 (225)
T ss_pred cccCCc
Confidence 999854
No 227
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.32 E-value=4e-07 Score=84.82 Aligned_cols=24 Identities=33% Similarity=0.747 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|+|..++||||||++|++..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 599999999999999999999875
No 228
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.32 E-value=3.9e-06 Score=85.10 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=68.3
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.+|+|+|+.++|||||++.+++..| +.... +|-.. .+
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~~-pT~~~------------~~----------------------------- 42 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFE------------NY----------------------------- 42 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCccC-Cceee------------ee-----------------------------
Confidence 3699999999999999999998875 22211 11000 00
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch----H
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS----D 203 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~----d 203 (827)
...+.+. .....+.|+||+|- +....+...|++..+.+||++ +.....+-. .
T Consensus 43 ---------~~~~~~~-~~~~~l~iwDtaG~-------------e~~~~~~~~~~~~ad~~ilvy-Dit~~~Sf~~~~~~ 98 (182)
T cd04172 43 ---------TASFEID-TQRIELSLWDTSGS-------------PYYDNVRPLSYPDSDAVLICF-DISRPETLDSVLKK 98 (182)
T ss_pred ---------EEEEEEC-CEEEEEEEEECCCc-------------hhhHhhhhhhcCCCCEEEEEE-ECCCHHHHHHHHHH
Confidence 0011111 11236899999993 244556667888888665554 443322211 2
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+...++...+ ..+.|+|.||.|+.+
T Consensus 99 w~~~i~~~~~-~~piilVgNK~DL~~ 123 (182)
T cd04172 99 WKGEIQEFCP-NTKMLLVGCKSDLRT 123 (182)
T ss_pred HHHHHHHHCC-CCCEEEEeEChhhhc
Confidence 2333444444 478999999999864
No 229
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.32 E-value=2.6e-06 Score=85.93 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=68.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
.|+|+|+.++|||||+..++...| +....+ |-.. .
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~-Ti~~------------~------------------------------- 37 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIP-TVFD------------N------------------------------- 37 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCC-ccee------------e-------------------------------
Confidence 599999999999999999998765 222111 1000 0
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc--ccch--HH
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD--LANS--DA 204 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d--~~~~--d~ 204 (827)
+ ...+.+.+ ....+.|+||+|-. ..+.+...|++..+++||+. +.+.. +.+. ..
T Consensus 38 ----~---~~~~~~~~-~~v~l~i~Dt~G~~-------------~~~~~~~~~~~~a~~~ilvy-d~~~~~Sf~~~~~~w 95 (176)
T cd04133 38 ----F---SANVSVDG-NTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFVLAF-SLISRASYENVLKKW 95 (176)
T ss_pred ----e---EEEEEECC-EEEEEEEEECCCCc-------------cccccchhhcCCCcEEEEEE-EcCCHHHHHHHHHHH
Confidence 0 00122211 22468999999953 33445556889887555554 43322 2221 22
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+..++...+ ..+.|+|.||.|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (176)
T cd04133 96 VPELRHYAP-NVPIVLVGTKLDLRDD 120 (176)
T ss_pred HHHHHHhCC-CCCEEEEEeChhhccC
Confidence 333444443 5889999999999753
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.32 E-value=1.9e-06 Score=98.00 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=72.2
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
-.|+++|..++|||||+++|++.- ...+.+ +...+.. .+....|.
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~---------------~~~~~~~-----------~d~~~~E~-------- 57 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVL-AKEGGA---------------AARAYDQ-----------IDNAPEEK-------- 57 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhH-HHhhcc---------------ccccccc-----------ccCCHHHH--------
Confidence 459999999999999999998651 111111 0000000 00001110
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l 207 (827)
..+++-+...+.+.. ....++||||||.. ..+..++ ..+...+ .+++|+++......++ .+.
T Consensus 58 --~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~------------~f~~~~~-~~~~~~D-~~ilVvda~~g~~~qt-~e~ 119 (394)
T TIGR00485 58 --ARGITINTAHVEYET-ENRHYAHVDCPGHA------------DYVKNMI-TGAAQMD-GAILVVSATDGPMPQT-REH 119 (394)
T ss_pred --hcCcceeeEEEEEcC-CCEEEEEEECCchH------------HHHHHHH-HHHhhCC-EEEEEEECCCCCcHHH-HHH
Confidence 123444444444433 23468999999953 2333443 2344555 5566777776655443 344
Q ss_pred HHHhCCCCCceE-EeeecCCCCCC
Q 003355 208 AGIADPDGYRTI-GIITKLDIMDR 230 (827)
Q Consensus 208 a~~~dp~g~rtI-gVlTK~D~~~~ 230 (827)
+..+...+.+.+ +|+||+|+.+.
T Consensus 120 l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 120 ILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHcCCCEEEEEEEecccCCH
Confidence 444544567765 68999999863
No 231
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.32 E-value=1.4e-06 Score=93.61 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=29.5
Q ss_pred EEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEE
Q 003355 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~ 86 (827)
|++||.+|+|||||+|+|+|.+.-......||+-|..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~ 37 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV 37 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhcee
Confidence 5899999999999999999998633344567777743
No 232
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=2.9e-06 Score=93.13 Aligned_cols=83 Identities=19% Similarity=0.321 Sum_probs=58.3
Q ss_pred ccEEEEeCCCCCcCCC-CCCchHHHHHHHHHHHHHhcC-------------CccEEEeecCCCCcccchHHHHHHHHhCC
Q 003355 148 LDITLVDLPGITKVPV-GEQPADIEARIRTMIMSYIKQ-------------PSCLILAVTPANSDLANSDALQIAGIADP 213 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~-~~q~~di~~~i~~lv~~yi~~-------------~~~iIL~V~~a~~d~~~~d~l~la~~~dp 213 (827)
.+||+|||||+.+.-. ..-...+...+...-..|+.+ -+|.+.++.|.+..+..-|. .+.+.+..
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di-~~Mk~l~~ 157 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI-EFMKKLSK 157 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH-HHHHHHhc
Confidence 4799999999965532 222234555666666667653 26778888888888888884 55555553
Q ss_pred CCCceEEeeecCCCCCCcc
Q 003355 214 DGYRTIGIITKLDIMDRGT 232 (827)
Q Consensus 214 ~g~rtIgVlTK~D~~~~~~ 232 (827)
..++|-||.|.|.+.+++
T Consensus 158 -~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred -cccccceeeccccCCHHH
Confidence 588999999999997654
No 233
>PRK10218 GTP-binding protein; Provisional
Probab=98.31 E-value=3.9e-06 Score=99.70 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=74.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCC-CCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRD-FLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~-~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
++-.|+|+|..++|||||+++|++.. .+..... .. . ...|..+.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~-~~---------------~----------~v~D~~~~--------- 48 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE-TQ---------------E----------RVMDSNDL--------- 48 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccc-cc---------------e----------eeeccccc---------
Confidence 45679999999999999999999642 1111100 00 0 00000000
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
....+++-......+.+ ....+.||||||..+ +...+..|++..+.+ ++|+++..+...+.
T Consensus 49 ---E~erGiTi~~~~~~i~~-~~~~inliDTPG~~d-------------f~~~v~~~l~~aDg~-ILVVDa~~G~~~qt- 109 (607)
T PRK10218 49 ---EKERGITILAKNTAIKW-NDYRINIVDTPGHAD-------------FGGEVERVMSMVDSV-LLVVDAFDGPMPQT- 109 (607)
T ss_pred ---cccCceEEEEEEEEEec-CCEEEEEEECCCcch-------------hHHHHHHHHHhCCEE-EEEEecccCccHHH-
Confidence 01123333222333333 235789999999642 233456788888755 55566666554443
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
...++.+...+.+.|+|+||+|+..
T Consensus 110 ~~~l~~a~~~gip~IVviNKiD~~~ 134 (607)
T PRK10218 110 RFVTKKAFAYGLKPIVVINKVDRPG 134 (607)
T ss_pred HHHHHHHHHcCCCEEEEEECcCCCC
Confidence 2334444446789999999999874
No 234
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.30 E-value=4.5e-06 Score=90.91 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=59.6
Q ss_pred ccEEEEeCCCCCcCCC-CCCchHHHHHHHHHHHHHhcCC--------------ccEEEeecCCCCcccchHHHHHHHHhC
Q 003355 148 LDITLVDLPGITKVPV-GEQPADIEARIRTMIMSYIKQP--------------SCLILAVTPANSDLANSDALQIAGIAD 212 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~-~~q~~di~~~i~~lv~~yi~~~--------------~~iIL~V~~a~~d~~~~d~l~la~~~d 212 (827)
.+|++|||||+.+.-. ..-...|...+++....|+.+. |+++.++-|.+..+...| +.+.+.+.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~D-Ie~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLD-IEAMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHH-HHHHHHHh
Confidence 4799999999975532 2223456666777777777522 667777778888888888 56667776
Q ss_pred CCCCceEEeeecCCCCCCc
Q 003355 213 PDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 213 p~g~rtIgVlTK~D~~~~~ 231 (827)
. ..+.|-||.|.|.+...
T Consensus 161 ~-~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 161 K-RVNLIPVIAKADTLTDD 178 (373)
T ss_pred c-ccCeeeeeeccccCCHH
Confidence 4 38899999999999654
No 235
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.30 E-value=8.3e-06 Score=93.14 Aligned_cols=67 Identities=22% Similarity=0.238 Sum_probs=40.2
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcc-cch--HHHHHHHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL-ANS--DALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~-~~~--d~l~la~~~dp~g~rtIgVlTK 224 (827)
..++||||||.. ..+..+ ..++...+ .+++|+++.... ..+ +.+.++..+. ..+.|+|+||
T Consensus 80 ~~i~liDtPGh~------------~f~~~~-~~g~~~aD-~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK 143 (406)
T TIGR03680 80 RRVSFVDAPGHE------------TLMATM-LSGAALMD-GALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNK 143 (406)
T ss_pred cEEEEEECCCHH------------HHHHHH-HHHHHHCC-EEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEc
Confidence 368999999942 233333 34455565 566667777544 222 2233333322 2568999999
Q ss_pred CCCCCC
Q 003355 225 LDIMDR 230 (827)
Q Consensus 225 ~D~~~~ 230 (827)
+|+.+.
T Consensus 144 ~Dl~~~ 149 (406)
T TIGR03680 144 IDLVSK 149 (406)
T ss_pred cccCCH
Confidence 999863
No 236
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.30 E-value=5.1e-06 Score=97.45 Aligned_cols=137 Identities=13% Similarity=0.145 Sum_probs=74.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
....|+|||..++|||||+|+|+-.. |...+.+. +. .. .. ......|+....+
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~------g~i~~~g~-v~--~~----g~------~~~t~~D~~~~E~-------- 62 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYG------GAIQTAGA-VK--GR----GS------QRHAKSDWMEMEK-------- 62 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhC------CCccccce-ec--cc----cc------cccccCCCCHHHH--------
Confidence 56789999999999999999986321 10011110 00 00 00 0001122222111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
..++|-..-.+.+.+ +...+.||||||.. .+...+..++...+++ |+|+++...+..+. .
T Consensus 63 ----~rgisi~~~~~~~~~-~~~~inliDTPG~~-------------df~~~~~~~l~~aD~a-IlVvDa~~gv~~~t-~ 122 (527)
T TIGR00503 63 ----QRGISITTSVMQFPY-RDCLVNLLDTPGHE-------------DFSEDTYRTLTAVDNC-LMVIDAAKGVETRT-R 122 (527)
T ss_pred ----hcCCcEEEEEEEEee-CCeEEEEEECCChh-------------hHHHHHHHHHHhCCEE-EEEEECCCCCCHHH-H
Confidence 123333222233333 23578999999963 1223345677777754 55566665544332 2
Q ss_pred HHHHHhCCCCCceEEeeecCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+.+.....+.++|+|+||+|+..
T Consensus 123 ~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 123 KLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHHhcCCCEEEEEECccccC
Confidence 344444445789999999999864
No 237
>PTZ00258 GTP-binding protein; Provisional
Probab=98.29 E-value=2.9e-06 Score=95.29 Aligned_cols=42 Identities=24% Similarity=0.357 Sum_probs=33.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEE
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVL 87 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l 87 (827)
.-.+|++||.+|+|||||+|+|++.........-||+-|..-
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g 61 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTA 61 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEE
Confidence 456899999999999999999999875444445678777543
No 238
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.29 E-value=2.1e-06 Score=89.83 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=55.8
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccE--EEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCL--ILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~i--IL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D 226 (827)
.+++||+||+.....+. +..+.+.+++..|+.+-..+ +++.+++...+...| ...+.++...+.+..+|+||+|
T Consensus 184 ~~~~vDlPG~~~a~y~~---~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D-~~~i~~~ge~~VP~t~vfTK~D 259 (320)
T KOG2486|consen 184 SWYEVDLPGYGRAGYGF---ELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTD-NPEIAWLGENNVPMTSVFTKCD 259 (320)
T ss_pred eEEEEecCCcccccCCc---cCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCC-hHHHHHHhhcCCCeEEeeehhh
Confidence 58999999976554432 23346678888898854433 233356666776666 5667777778899999999999
Q ss_pred CCCCc
Q 003355 227 IMDRG 231 (827)
Q Consensus 227 ~~~~~ 231 (827)
.+...
T Consensus 260 K~k~~ 264 (320)
T KOG2486|consen 260 KQKKV 264 (320)
T ss_pred hhhhc
Confidence 98643
No 239
>PLN00023 GTP-binding protein; Provisional
Probab=98.27 E-value=3.9e-06 Score=91.56 Aligned_cols=29 Identities=31% Similarity=0.355 Sum_probs=25.3
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 44 TIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 44 ~~~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.....+|+|||+.++|||||++.|++..|
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F 46 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSS 46 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCc
Confidence 34556899999999999999999998865
No 240
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.26 E-value=4.9e-06 Score=95.64 Aligned_cols=81 Identities=21% Similarity=0.254 Sum_probs=45.3
Q ss_pred cccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc---ccchH--HHH
Q 003355 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---LANSD--ALQ 206 (827)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---~~~~d--~l~ 206 (827)
+++-+.....+...+ ..++||||||.. ..+..+ ..++...+ ++++|+++... ...+. .+.
T Consensus 70 g~Tid~~~~~~~~~~-~~i~iiDtpGh~------------~f~~~~-~~~~~~aD-~~ilVvDa~~~~~~~~~~t~~~~~ 134 (426)
T TIGR00483 70 GVTIDVAHWKFETDK-YEVTIVDCPGHR------------DFIKNM-ITGASQAD-AAVLVVAVGDGEFEVQPQTREHAF 134 (426)
T ss_pred CceEEEEEEEEccCC-eEEEEEECCCHH------------HHHHHH-HhhhhhCC-EEEEEEECCCCCcccCCchHHHHH
Confidence 344444444444333 478999999932 233333 34556676 55555666554 22221 123
Q ss_pred HHHHhCCCCCceEEeeecCCCCC
Q 003355 207 IAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 207 la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+++.+. ..+.|+|+||+|+.+
T Consensus 135 ~~~~~~--~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 135 LARTLG--INQLIVAINKMDSVN 155 (426)
T ss_pred HHHHcC--CCeEEEEEEChhccC
Confidence 444442 257889999999975
No 241
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.25 E-value=4.2e-06 Score=92.98 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=30.2
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceE
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPL 85 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~ 85 (827)
.+|++||.+|+|||||+|+|+|..........||+-|.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~ 40 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPN 40 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccce
Confidence 57999999999999999999998742233356777774
No 242
>PRK13351 elongation factor G; Reviewed
Probab=98.24 E-value=6.7e-06 Score=100.13 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=46.9
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..+.||||||..+ +...+..+++..+. +++|+++......+. ..+.+.+...+.+.++|+||+|+
T Consensus 73 ~~i~liDtPG~~d-------------f~~~~~~~l~~aD~-~ilVvd~~~~~~~~~-~~~~~~~~~~~~p~iiviNK~D~ 137 (687)
T PRK13351 73 HRINLIDTPGHID-------------FTGEVERSLRVLDG-AVVVFDAVTGVQPQT-ETVWRQADRYGIPRLIFINKMDR 137 (687)
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHHHhCCE-EEEEEeCCCCCCHHH-HHHHHHHHhcCCCEEEEEECCCC
Confidence 5799999999642 23455678887774 455666666554333 34555566668999999999998
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
...
T Consensus 138 ~~~ 140 (687)
T PRK13351 138 VGA 140 (687)
T ss_pred CCC
Confidence 853
No 243
>PTZ00416 elongation factor 2; Provisional
Probab=98.23 E-value=5.7e-06 Score=102.30 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=47.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+ .+.+ +...++..+ .+++|+++..++..+. ..+++.+...+.+.|+|+||+|+
T Consensus 92 ~~i~liDtPG~~~------------f~~~-~~~al~~~D-~ailVvda~~g~~~~t-~~~~~~~~~~~~p~iv~iNK~D~ 156 (836)
T PTZ00416 92 FLINLIDSPGHVD------------FSSE-VTAALRVTD-GALVVVDCVEGVCVQT-ETVLRQALQERIRPVLFINKVDR 156 (836)
T ss_pred eEEEEEcCCCHHh------------HHHH-HHHHHhcCC-eEEEEEECCCCcCccH-HHHHHHHHHcCCCEEEEEEChhh
Confidence 3589999999742 2222 345566666 5566777887777665 46777777778899999999999
Q ss_pred C
Q 003355 228 M 228 (827)
Q Consensus 228 ~ 228 (827)
.
T Consensus 157 ~ 157 (836)
T PTZ00416 157 A 157 (836)
T ss_pred h
Confidence 7
No 244
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.23 E-value=5.1e-06 Score=101.57 Aligned_cols=133 Identities=13% Similarity=0.183 Sum_probs=74.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
....|+|+|..++|||||+++|+... |..++.- .+ +....|+.+..++ .
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~-----~g--------------~~~~~D~~~~E~~--r---- 67 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL-----AG--------------EQLALDFDEEEQA--R---- 67 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh-----cC--------------cceecCccHHHHH--h----
Confidence 56789999999999999999998542 1111100 00 0112232221111 0
Q ss_pred hcCCCCcccccceEEEEecC-CcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSP-HVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p-~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
+..+....+.+..... ....++||||||..+- ...+...+...+ .+++|+++..++..+.
T Consensus 68 ----giTi~~~~~~~~~~~~~~~~~i~liDtPG~~df-------------~~~~~~~l~~~D-~avlVvda~~g~~~~t- 128 (731)
T PRK07560 68 ----GITIKAANVSMVHEYEGKEYLINLIDTPGHVDF-------------GGDVTRAMRAVD-GAIVVVDAVEGVMPQT- 128 (731)
T ss_pred ----hhhhhccceEEEEEecCCcEEEEEEcCCCccCh-------------HHHHHHHHHhcC-EEEEEEECCCCCCccH-
Confidence 0111122222322111 2346899999997531 123445666666 4455667776665544
Q ss_pred HHHHHHhCCCCCceEEeeecCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
..+++.+...+.+.|+|+||+|+.
T Consensus 129 ~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 129 ETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHHHHHcCCCeEEEEECchhh
Confidence 345555444567889999999986
No 245
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.22 E-value=4.4e-06 Score=82.43 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=32.6
Q ss_pred CchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCcc
Q 003355 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (827)
Q Consensus 23 ~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~ 75 (827)
..+-.+++.|.+.++.. ..-.-..|+++|.+|+|||||||+|.|....++
T Consensus 81 ~~~~~L~~~l~~~~~~~---~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~ 130 (157)
T cd01858 81 FGKGSLIQLLRQFSKLH---SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKV 130 (157)
T ss_pred ccHHHHHHHHHHHHhhh---ccccceEEEEEeCCCCChHHHHHHHhcCCceee
Confidence 34445555555543311 111224688999999999999999999875444
No 246
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.21 E-value=2.1e-05 Score=79.82 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|+|..++|||||++.|.+..+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~ 26 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF 26 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999986544
No 247
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=1.4e-05 Score=80.91 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=80.8
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 44 ~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
+-.+-.|++||+.++|||++|-.+....|-+. .. .
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~-------~~-----------s--------------------------- 43 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS-------FI-----------S--------------------------- 43 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCC-------cc-----------c---------------------------
Confidence 44567899999999999999999988765210 00 0
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d 203 (827)
..|+....-++++.+ ....|.+|||.| ++..+.++..|.+.+..++|++. .....+-..
T Consensus 44 ------TiGIDFk~kti~l~g-~~i~lQiWDtaG-------------Qerf~ti~~sYyrgA~gi~LvyD-itne~Sfen 102 (207)
T KOG0078|consen 44 ------TIGIDFKIKTIELDG-KKIKLQIWDTAG-------------QERFRTITTAYYRGAMGILLVYD-ITNEKSFEN 102 (207)
T ss_pred ------eEEEEEEEEEEEeCC-eEEEEEEEEccc-------------chhHHHHHHHHHhhcCeeEEEEE-ccchHHHHH
Confidence 011112222233322 234589999999 46889999999999986666653 333322222
Q ss_pred ---HHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 204 ---ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 204 ---~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
+++..++..+.+...++|-||+|+-++.
T Consensus 103 i~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R 133 (207)
T KOG0078|consen 103 IRNWIKNIDEHASDDVVKILVGNKCDLEEKR 133 (207)
T ss_pred HHHHHHHHHhhCCCCCcEEEeeccccccccc
Confidence 3455555566688999999999998743
No 248
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.20 E-value=7.4e-06 Score=100.00 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=45.3
Q ss_pred cccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCC
Q 003355 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (827)
Q Consensus 147 ~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D 226 (827)
...++||||||..+- ...+..++...+ .+|+|+++..++..+. ..+.+.+...+.+.|+|+||+|
T Consensus 85 ~~~i~liDTPG~~~f-------------~~~~~~al~~aD-~~llVvda~~g~~~~t-~~~~~~~~~~~~p~ivviNKiD 149 (720)
T TIGR00490 85 EYLINLIDTPGHVDF-------------GGDVTRAMRAVD-GAIVVVCAVEGVMPQT-ETVLRQALKENVKPVLFINKVD 149 (720)
T ss_pred ceEEEEEeCCCcccc-------------HHHHHHHHHhcC-EEEEEEecCCCCCccH-HHHHHHHHHcCCCEEEEEEChh
Confidence 357899999998632 123456777777 4455556766554443 3455555455678899999999
Q ss_pred CCC
Q 003355 227 IMD 229 (827)
Q Consensus 227 ~~~ 229 (827)
...
T Consensus 150 ~~~ 152 (720)
T TIGR00490 150 RLI 152 (720)
T ss_pred ccc
Confidence 874
No 249
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.19 E-value=7.5e-06 Score=82.39 Aligned_cols=114 Identities=20% Similarity=0.254 Sum_probs=69.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.--+|+++|..+|||||+|+.|....+.. -.| |.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~-------~~p-------T~-------------------------------- 46 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE-------TIP-------TI-------------------------------- 46 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE-------EEE-------ES--------------------------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc-------cCc-------cc--------------------------------
Confidence 45689999999999999999998764311 011 10
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
++. .-++.+ ....++++|++|=. .++.+...|....+ .|++|+|+...-.-.++.
T Consensus 47 ------g~~--~~~i~~---~~~~~~~~d~gG~~-------------~~~~~w~~y~~~~~-~iIfVvDssd~~~l~e~~ 101 (175)
T PF00025_consen 47 ------GFN--IEEIKY---KGYSLTIWDLGGQE-------------SFRPLWKSYFQNAD-GIIFVVDSSDPERLQEAK 101 (175)
T ss_dssp ------SEE--EEEEEE---TTEEEEEEEESSSG-------------GGGGGGGGGHTTES-EEEEEEETTGGGGHHHHH
T ss_pred ------ccc--cceeee---CcEEEEEEeccccc-------------cccccceeeccccc-eeEEEEecccceeecccc
Confidence 000 001111 12368999999942 23445557888777 556666665433333443
Q ss_pred HHHHH-hC---CCCCceEEeeecCCCCCC
Q 003355 206 QIAGI-AD---PDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~-~d---p~g~rtIgVlTK~D~~~~ 230 (827)
..... +. -.+.|.++++||.|+.+.
T Consensus 102 ~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 102 EELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp HHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred cchhhhcchhhcccceEEEEeccccccCc
Confidence 32222 22 236899999999998753
No 250
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.17 E-value=8.9e-06 Score=100.80 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=46.1
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+ .+.++ ..-++..+ ..++|++|..++..+. ..+.+.+...+.++|+++||+|+
T Consensus 98 ~~inliDtPGh~d------------F~~e~-~~al~~~D-~ailVvda~~Gv~~~t-~~~~~~~~~~~~p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHVD------------FSSEV-TAALRITD-GALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHHH------------HHHHH-HHHHhhcC-EEEEEEECCCCCcccH-HHHHHHHHHCCCCEEEEEECCcc
Confidence 3579999999631 33333 34455566 4455566777776555 46677777778999999999999
Q ss_pred C
Q 003355 228 M 228 (827)
Q Consensus 228 ~ 228 (827)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 8
No 251
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.16 E-value=2e-05 Score=90.06 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-.|+|+|..++|||||+++|+|.
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCe
Confidence 46999999999999999999875
No 252
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=1e-05 Score=80.90 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=80.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
-+-.|+|+|+.++|||-|+-.+.+-.| +-..
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~------------------------------------------------ 38 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTF-TESY------------------------------------------------ 38 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCc-chhh------------------------------------------------
Confidence 356899999999999999999988875 1111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
....|+......+++.+... .|.++||.| ++.++.++.+|.+.+|.||++ -+.....+-....
T Consensus 39 --~sTIGVDf~~rt~e~~gk~i-KlQIWDTAG-------------QERFrtit~syYR~ahGii~v-yDiT~~~SF~~v~ 101 (205)
T KOG0084|consen 39 --ISTIGVDFKIRTVELDGKTI-KLQIWDTAG-------------QERFRTITSSYYRGAHGIIFV-YDITKQESFNNVK 101 (205)
T ss_pred --cceeeeEEEEEEeeecceEE-EEEeeeccc-------------cHHHhhhhHhhccCCCeEEEE-EEcccHHHhhhHH
Confidence 11223444444556655443 789999999 468999999999999966665 3333222211122
Q ss_pred HHHHHhC---CCCCceEEeeecCCCCCC
Q 003355 206 QIAGIAD---PDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~d---p~g~rtIgVlTK~D~~~~ 230 (827)
++..+++ ....+.+.|-||+|+.+.
T Consensus 102 ~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 102 RWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred HHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 3344444 345789999999999874
No 253
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.13 E-value=5.3e-05 Score=75.19 Aligned_cols=136 Identities=18% Similarity=0.207 Sum_probs=79.5
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
..-..|+|+|.+++||+|++.+++.... +.-....+.. .+. ++
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~-v~t~~~~~~~-------------s~k------~k----------------- 50 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPL-VITEADASSV-------------SGK------GK----------------- 50 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhcccc-ceeecccccc-------------ccc------cc-----------------
Confidence 4567899999999999999999998752 2211111100 000 00
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
.+..+.-+.-.+++.+ ...+.|+|||| +.+++-|..-+.+....+|++|. ++.+... .+
T Consensus 51 ----r~tTva~D~g~~~~~~--~~~v~LfgtPG-------------q~RF~fm~~~l~~ga~gaivlVD-ss~~~~~-~a 109 (187)
T COG2229 51 ----RPTTVAMDFGSIELDE--DTGVHLFGTPG-------------QERFKFMWEILSRGAVGAIVLVD-SSRPITF-HA 109 (187)
T ss_pred ----cceeEeecccceEEcC--cceEEEecCCC-------------cHHHHHHHHHHhCCcceEEEEEe-cCCCcch-HH
Confidence 0011111111222222 23689999999 34667777778888776666654 3333332 44
Q ss_pred HHHHHHhCCCC-CceEEeeecCCCCCCc--ccHHHhh
Q 003355 205 LQIAGIADPDG-YRTIGIITKLDIMDRG--TDARNLL 238 (827)
Q Consensus 205 l~la~~~dp~g-~rtIgVlTK~D~~~~~--~~~~~~l 238 (827)
..+...+.-.. .+.++.+||.|+.+.. +...+++
T Consensus 110 ~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l 146 (187)
T COG2229 110 EEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREAL 146 (187)
T ss_pred HHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHH
Confidence 55555554444 8999999999998642 2344444
No 254
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.11 E-value=6.7e-06 Score=91.97 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=49.4
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccc--hHHHHHHHHhCCC--CCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN--SDALQIAGIADPD--GYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~--~d~l~la~~~dp~--g~rtIgVlTK 224 (827)
.+.++|||||.+.+..+- . .|+-.+...+.+-.+.+|++++-+..-.- .+=+++-..+.|. .+++|+|+||
T Consensus 216 rwQViDTPGILD~plEdr-N----~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK 290 (620)
T KOG1490|consen 216 RWQVIDTPGILDRPEEDR-N----IIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNK 290 (620)
T ss_pred eeeecCCccccCcchhhh-h----HHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeec
Confidence 478999999987664431 1 22222223444444678888776543222 2224666667664 6889999999
Q ss_pred CCCCCCc
Q 003355 225 LDIMDRG 231 (827)
Q Consensus 225 ~D~~~~~ 231 (827)
+|.+...
T Consensus 291 ~D~m~~e 297 (620)
T KOG1490|consen 291 IDAMRPE 297 (620)
T ss_pred ccccCcc
Confidence 9999653
No 255
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.10 E-value=0.00015 Score=75.24 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=21.8
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
...-+|+++|..+||||||++.++...+
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~ 34 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEF 34 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCC
Confidence 4456899999999999999976554333
No 256
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.10 E-value=5e-05 Score=75.04 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+|+|+|+.++|||||+..+++..|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f 25 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY 25 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 699999999999999999887665
No 257
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.10 E-value=1.1e-05 Score=81.10 Aligned_cols=31 Identities=32% Similarity=0.332 Sum_probs=26.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~ 77 (827)
..+|+|+|.+|+|||||+|+|+|....+++.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~ 147 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGA 147 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecC
Confidence 4589999999999999999999987655443
No 258
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.10 E-value=8e-06 Score=83.15 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=32.0
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 22 ~~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+..+-.+++.|.+.+. .-.+|++||.+|+|||||||+|++...
T Consensus 110 ~~gi~eL~~~l~~~l~--------~~~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 110 GWGVEELINAIKKLAK--------KGGDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CCCHHHHHHHHHHHhh--------cCCcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 4455556666665432 235799999999999999999998754
No 259
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.10 E-value=6.2e-06 Score=81.20 Aligned_cols=40 Identities=35% Similarity=0.337 Sum_probs=30.7
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccce
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRP 84 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p 84 (827)
...++|+|+|.+++|||||+|+|++...++.+.+ .+|+++
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~ 138 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce
Confidence 4668899999999999999999999865554443 344444
No 260
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.09 E-value=4.3e-06 Score=89.44 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=23.2
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
-|+++||-+|+|||||||+|+|.+-
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~s 88 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKS 88 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCc
Confidence 5899999999999999999999863
No 261
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.04 E-value=9.3e-06 Score=78.69 Aligned_cols=25 Identities=40% Similarity=0.680 Sum_probs=23.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~l 73 (827)
.++|+|.+|+|||||+|+|+|..++
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~ 109 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV 109 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce
Confidence 8999999999999999999998753
No 262
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.04 E-value=2.2e-05 Score=80.49 Aligned_cols=65 Identities=15% Similarity=-0.004 Sum_probs=38.0
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH----HHHHHHHhCCCCCceEEeee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD----ALQIAGIADPDGYRTIGIIT 223 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d----~l~la~~~dp~g~rtIgVlT 223 (827)
..|.|+||+|... .+...|++..+.+||+ .+.....+-.. ++..++...+ ..+.|+|.|
T Consensus 66 v~l~iwDTaG~~~---------------~~~~~~~~~ad~iilv-~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgN 128 (195)
T cd01873 66 VSLRLWDTFGDHD---------------KDRRFAYGRSDVVLLC-FSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGC 128 (195)
T ss_pred EEEEEEeCCCChh---------------hhhcccCCCCCEEEEE-EECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence 3689999999531 1123477888754444 44443222111 2233333333 578999999
Q ss_pred cCCCCC
Q 003355 224 KLDIMD 229 (827)
Q Consensus 224 K~D~~~ 229 (827)
|.|+.+
T Consensus 129 K~DL~~ 134 (195)
T cd01873 129 KLDLRY 134 (195)
T ss_pred chhccc
Confidence 999865
No 263
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.01 E-value=2.6e-05 Score=88.44 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=31.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEE
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~ 86 (827)
.+|++||.+|+|||||+|+|++..+.......||+-|+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999987643344567877754
No 264
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0002 Score=68.21 Aligned_cols=121 Identities=18% Similarity=0.279 Sum_probs=83.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
-|-.||+||.-++||+-|+..++.- +||-|.|.+--.-
T Consensus 6 flfkivlvgnagvgktclvrrftqg-lfppgqgatigvd----------------------------------------- 43 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVD----------------------------------------- 43 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeee-----------------------------------------
Confidence 3568999999999999999999866 5687776322111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeec-CCCCccc-chH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVT-PANSDLA-NSD 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~-~a~~d~~-~~d 203 (827)
.-..++++.+. ...|.++||.| .+.++.++.+|.+.++++||+.. .+...+. -.+
T Consensus 44 ---------fmiktvev~ge-kiklqiwdtag-------------qerfrsitqsyyrsahalilvydiscqpsfdclpe 100 (213)
T KOG0095|consen 44 ---------FMIKTVEVNGE-KIKLQIWDTAG-------------QERFRSITQSYYRSAHALILVYDISCQPSFDCLPE 100 (213)
T ss_pred ---------EEEEEEEECCe-EEEEEEeeccc-------------hHHHHHHHHHHhhhcceEEEEEecccCcchhhhHH
Confidence 11112222221 23689999999 46899999999999998888753 3332222 234
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
++.-..++.....-.|.|-||+|+.++.
T Consensus 101 wlreie~yan~kvlkilvgnk~d~~drr 128 (213)
T KOG0095|consen 101 WLREIEQYANNKVLKILVGNKIDLADRR 128 (213)
T ss_pred HHHHHHHHhhcceEEEeeccccchhhhh
Confidence 5556666666666789999999998854
No 265
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.96 E-value=9.6e-05 Score=85.28 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=40.3
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc-ccch--HHHHHHHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANS--DALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~--d~l~la~~~dp~g~rtIgVlTK~ 225 (827)
.++|||+||. +..++.|+.. +...+ .+++|++|... ...+ +.+.++..+. -.+.|+|+||+
T Consensus 118 ~i~~IDtPGH------------~~fi~~m~~g-~~~~D-~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKi 181 (460)
T PTZ00327 118 HVSFVDCPGH------------DILMATMLNG-AAVMD-AALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKI 181 (460)
T ss_pred eEeeeeCCCH------------HHHHHHHHHH-HhhCC-EEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecc
Confidence 5899999993 2345555433 34455 55667777754 2322 3344444333 24689999999
Q ss_pred CCCCC
Q 003355 226 DIMDR 230 (827)
Q Consensus 226 D~~~~ 230 (827)
|+.+.
T Consensus 182 Dlv~~ 186 (460)
T PTZ00327 182 DLVKE 186 (460)
T ss_pred cccCH
Confidence 99863
No 266
>PRK12740 elongation factor G; Reviewed
Probab=97.96 E-value=3.7e-05 Score=93.51 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=46.6
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+ +...+..++...+ ++++|+++..+...+. ..+.+.+...+.+.|+|+||+|+
T Consensus 60 ~~i~liDtPG~~~-------------~~~~~~~~l~~aD-~vllvvd~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~D~ 124 (668)
T PRK12740 60 HKINLIDTPGHVD-------------FTGEVERALRVLD-GAVVVVCAVGGVEPQT-ETVWRQAEKYGVPRIIFVNKMDR 124 (668)
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHHHHhC-eEEEEEeCCCCcCHHH-HHHHHHHHHcCCCEEEEEECCCC
Confidence 5799999999642 2233456677776 5666667766654443 34555555567999999999999
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
...
T Consensus 125 ~~~ 127 (668)
T PRK12740 125 AGA 127 (668)
T ss_pred CCC
Confidence 853
No 267
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=1.4e-05 Score=79.65 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=68.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
.|||+|+.++|||||+..++-.+|.+. ...+ .-+.|+
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk~~F~e~-~e~T----------------IGaaF~-------------------------- 43 (200)
T KOG0092|consen 7 KVVLLGDSGVGKSSLVLRFVKDQFHEN-IEPT----------------IGAAFL-------------------------- 43 (200)
T ss_pred EEEEECCCCCCchhhhhhhhhCccccc-cccc----------------cccEEE--------------------------
Confidence 599999999999999999998877321 1000 011111
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHH
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA 208 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la 208 (827)
..++.+. .....+-++||.|- +..+.+..-|.+.++++||+ -+.+..-+-..+..+.
T Consensus 44 --------tktv~~~-~~~ikfeIWDTAGQ-------------ERy~slapMYyRgA~AAivv-YDit~~~SF~~aK~Wv 100 (200)
T KOG0092|consen 44 --------TKTVTVD-DNTIKFEIWDTAGQ-------------ERYHSLAPMYYRGANAAIVV-YDITDEESFEKAKNWV 100 (200)
T ss_pred --------EEEEEeC-CcEEEEEEEEcCCc-------------ccccccccceecCCcEEEEE-EecccHHHHHHHHHHH
Confidence 1111111 11335779999994 34567777899999866655 3433332333333444
Q ss_pred HHhCCCCCc-eE--EeeecCCCCCC
Q 003355 209 GIADPDGYR-TI--GIITKLDIMDR 230 (827)
Q Consensus 209 ~~~dp~g~r-tI--gVlTK~D~~~~ 230 (827)
+++.....+ ++ +|-||+|+.+.
T Consensus 101 keL~~~~~~~~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 101 KELQRQASPNIVIALVGNKADLLER 125 (200)
T ss_pred HHHHhhCCCCeEEEEecchhhhhhc
Confidence 444433333 44 47899999973
No 268
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.94 E-value=1.9e-05 Score=79.54 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=20.6
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.|.|+++|..+||||+|+..|....+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~ 28 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT 28 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc
Confidence 47899999999999999999997654
No 269
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.93 E-value=3.8e-05 Score=80.54 Aligned_cols=38 Identities=34% Similarity=0.378 Sum_probs=29.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC-CCCccCCC--ccccc
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR-DFLPRGND--ICTRR 83 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~-~~lP~~~g--~~Tr~ 83 (827)
..-.|+|+|.+++|||+|||.|+|. +.++.+.+ .||+-
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~g 46 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKG 46 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccc
Confidence 4456899999999999999999998 23466655 56654
No 270
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.89 E-value=2.5e-05 Score=74.22 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=48.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcc---cchHHHHHHHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---ANSDALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---~~~d~l~la~~~dp~g~rtIgVlTK 224 (827)
..+.++|+||- ..++.|-..|.+..+.|+.+|..|..+- +.++...++..-.-.|.+.++.-||
T Consensus 65 vtiklwD~gGq-------------~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK 131 (186)
T KOG0075|consen 65 VTIKLWDLGGQ-------------PRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNK 131 (186)
T ss_pred eEEEEEecCCC-------------ccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEeccc
Confidence 35789999992 3678899999999886666665555442 2333334444434458899999999
Q ss_pred CCCCCC
Q 003355 225 LDIMDR 230 (827)
Q Consensus 225 ~D~~~~ 230 (827)
.|+.+.
T Consensus 132 ~d~~~A 137 (186)
T KOG0075|consen 132 IDLPGA 137 (186)
T ss_pred ccCccc
Confidence 999864
No 271
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.87 E-value=0.00021 Score=81.21 Aligned_cols=78 Identities=26% Similarity=0.192 Sum_probs=48.2
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.++.||||||..... ...-+.+..+. . ..+++ -+++|++|..+ +++...++.+......+-+|+||+|.
T Consensus 183 ~DvViIDTaGr~~~d-----~~lm~El~~i~-~-~~~p~-e~lLVlda~~G---q~a~~~a~~F~~~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 183 FDIIIVDTSGRHKQE-----DSLFEEMLQVA-E-AIQPD-NIIFVMDGSIG---QAAEAQAKAFKDSVDVGSVIITKLDG 251 (429)
T ss_pred CCEEEEECCCCCcch-----HHHHHHHHHHh-h-hcCCc-EEEEEeccccC---hhHHHHHHHHHhccCCcEEEEECccC
Confidence 479999999965321 22222333332 1 22454 56777777643 45566677776555678899999999
Q ss_pred CCCcccHHH
Q 003355 228 MDRGTDARN 236 (827)
Q Consensus 228 ~~~~~~~~~ 236 (827)
..++-.+..
T Consensus 252 ~argG~aLs 260 (429)
T TIGR01425 252 HAKGGGALS 260 (429)
T ss_pred CCCccHHhh
Confidence 877654443
No 272
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.86 E-value=0.00014 Score=77.71 Aligned_cols=128 Identities=23% Similarity=0.289 Sum_probs=84.3
Q ss_pred CCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHh
Q 003355 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (827)
Q Consensus 43 ~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (827)
...+.|.|+|||..||||||||++|++..++|.+.-..|--|+ .+ ..++
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT-------~h------~a~L------------------ 222 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPT-------LH------SAHL------------------ 222 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccch-------hh------hccC------------------
Confidence 3578999999999999999999999999988876654443331 00 0011
Q ss_pred hhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch
Q 003355 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (827)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (827)
|...-+.|.||-||++. =|..+.+.++.. ...+..++ +||-|++.+...+..
T Consensus 223 ----------------------psg~~vlltDTvGFisd----LP~~LvaAF~AT-LeeVaead-lllHvvDiShP~ae~ 274 (410)
T KOG0410|consen 223 ----------------------PSGNFVLLTDTVGFISD----LPIQLVAAFQAT-LEEVAEAD-LLLHVVDISHPNAEE 274 (410)
T ss_pred ----------------------CCCcEEEEeechhhhhh----CcHHHHHHHHHH-HHHHhhcc-eEEEEeecCCccHHH
Confidence 22234789999999754 245555555543 45555554 899998887665443
Q ss_pred H---HHHHHHHhCC----CCCceEEeeecCCCCC
Q 003355 203 D---ALQIAGIADP----DGYRTIGIITKLDIMD 229 (827)
Q Consensus 203 d---~l~la~~~dp----~g~rtIgVlTK~D~~~ 229 (827)
. .+...+.++- ...+.|=|=||+|...
T Consensus 275 q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 275 QRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 2 2455555543 2356777788888764
No 273
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.82 E-value=6.6e-05 Score=86.61 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=40.5
Q ss_pred cccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc-cc-----chHHHHHHHHhCCCCC-ceE
Q 003355 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LA-----NSDALQIAGIADPDGY-RTI 219 (827)
Q Consensus 147 ~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~-----~~d~l~la~~~dp~g~-rtI 219 (827)
...++||||||.. +.+..| ..++..+++.|| |+++..+ +. .....+.+..+...|. +.|
T Consensus 84 ~~~i~liDtPGh~------------df~~~~-~~g~~~aD~aIl-VVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iI 149 (447)
T PLN00043 84 KYYCTVIDAPGHR------------DFIKNM-ITGTSQADCAVL-IIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149 (447)
T ss_pred CEEEEEEECCCHH------------HHHHHH-HhhhhhccEEEE-EEEcccCceecccCCCchHHHHHHHHHHcCCCcEE
Confidence 3578999999932 244444 455677776655 4555544 21 0111233333333456 568
Q ss_pred EeeecCCCCC
Q 003355 220 GIITKLDIMD 229 (827)
Q Consensus 220 gVlTK~D~~~ 229 (827)
+|+||+|+.+
T Consensus 150 V~vNKmD~~~ 159 (447)
T PLN00043 150 CCCNKMDATT 159 (447)
T ss_pred EEEEcccCCc
Confidence 8899999873
No 274
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.81 E-value=5.9e-05 Score=87.05 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+++|..++|||||+++|+..
T Consensus 9 nv~i~Ghvd~GKSTL~~~Ll~~ 30 (446)
T PTZ00141 9 NLVVIGHVDSGKSTTTGHLIYK 30 (446)
T ss_pred EEEEEecCCCCHHHHHHHHHHH
Confidence 5899999999999999999853
No 275
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00012 Score=81.67 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=60.2
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
+++||||||-.... ......+..++.. ..++ -+++|++|.. ...++...++.+... .-.=+|+||+|..
T Consensus 322 DvVLIDTaGRs~kd-----~~lm~EL~~~lk~--~~Pd-evlLVLsATt--k~~d~~~i~~~F~~~-~idglI~TKLDET 390 (436)
T PRK11889 322 DYILIDTAGKNYRA-----SETVEEMIETMGQ--VEPD-YICLTLSASM--KSKDMIEIITNFKDI-HIDGIVFTKFDET 390 (436)
T ss_pred CEEEEeCccccCcC-----HHHHHHHHHHHhh--cCCC-eEEEEECCcc--ChHHHHHHHHHhcCC-CCCEEEEEcccCC
Confidence 79999999975421 1111223333222 1344 4555566653 335556778777763 4566789999999
Q ss_pred CCcccHHHhhccccccccceEEEEEcCCchhhh
Q 003355 229 DRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
..+-.+.+++.. ..+.+.|++.-.+-++|+.
T Consensus 391 ~k~G~iLni~~~--~~lPIsyit~GQ~VPeDI~ 421 (436)
T PRK11889 391 ASSGELLKIPAV--SSAPIVLMTDGQDVKKNIH 421 (436)
T ss_pred CCccHHHHHHHH--HCcCEEEEeCCCCCCcchh
Confidence 876655555433 2455677777777777764
No 276
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.78 E-value=4.4e-05 Score=82.63 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=24.9
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCcc
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~ 75 (827)
..+|+|||.+|+|||||+|+|+|.....+
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~ 146 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKV 146 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccc
Confidence 45799999999999999999999875444
No 277
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.78 E-value=4.8e-05 Score=82.82 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=25.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCcc
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~ 75 (827)
..+|+|||.+|+|||||||+|+|.....+
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~ 149 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKT 149 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcccc
Confidence 45799999999999999999999875443
No 278
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.77 E-value=0.00019 Score=79.28 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
...|.|+|.+|||||||+++|...
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998754
No 279
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=97.76 E-value=6.5e-05 Score=72.50 Aligned_cols=117 Identities=22% Similarity=0.214 Sum_probs=74.1
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
.-.-.|.+||+.++||||||-.++...|=| ...|-
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~---~~~~t------------------------------------------ 43 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDD---LHPTT------------------------------------------ 43 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCc---cCCce------------------------------------------
Confidence 344679999999999999999998876522 11110
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCC-CcccchH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN-SDLANSD 203 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~-~d~~~~d 203 (827)
.|+..++-.+.|.+. ...|.|+||.| ++.++.++-+|.+.+..+||+..-.. ..+.+-+
T Consensus 44 ------IGvDFkvk~m~vdg~-~~KlaiWDTAG-------------qErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd 103 (209)
T KOG0080|consen 44 ------IGVDFKVKVMQVDGK-RLKLAIWDTAG-------------QERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLD 103 (209)
T ss_pred ------eeeeEEEEEEEEcCc-eEEEEEEeccc-------------hHhhhccCHhHhccCceeEEEEEccchhhHHhHH
Confidence 122222333333332 24689999999 46899999999998887777643222 2233332
Q ss_pred HHHHHHHhCCCC----CceEEeeecCCCC
Q 003355 204 ALQIAGIADPDG----YRTIGIITKLDIM 228 (827)
Q Consensus 204 ~l~la~~~dp~g----~rtIgVlTK~D~~ 228 (827)
.+++++|-.. .-.+.|-||+|.-
T Consensus 104 --~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 104 --IWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred --HHHHHHHhhcCCccHhHhhhcccccch
Confidence 3566666432 2345778898854
No 280
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00029 Score=79.96 Aligned_cols=113 Identities=23% Similarity=0.306 Sum_probs=75.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..|-|-|+|.--.||+|||.+|-+..+-....|--|.- .|.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQh--------------IGA------------------------- 192 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQH--------------IGA------------------------- 192 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccce--------------ece-------------------------
Confidence 56899999999999999999998877643333322211 111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch--H
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--D 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--d 203 (827)
..+.-|....+||.||||- +.+..|=.+=. +-.+|+++|+.|.+..-.| +
T Consensus 193 --------------F~V~~p~G~~iTFLDTPGH-------------aAF~aMRaRGA-~vtDIvVLVVAadDGVmpQT~E 244 (683)
T KOG1145|consen 193 --------------FTVTLPSGKSITFLDTPGH-------------AAFSAMRARGA-NVTDIVVLVVAADDGVMPQTLE 244 (683)
T ss_pred --------------EEEecCCCCEEEEecCCcH-------------HHHHHHHhccC-ccccEEEEEEEccCCccHhHHH
Confidence 1233344467999999994 24444422222 3345888899888877654 4
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
+.+.|+.. +.++|+.+||+|.-
T Consensus 245 aIkhAk~A---~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 245 AIKHAKSA---NVPIVVAINKIDKP 266 (683)
T ss_pred HHHHHHhc---CCCEEEEEeccCCC
Confidence 45556555 59999999999965
No 281
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.73 E-value=0.00015 Score=72.67 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~l 73 (827)
..+.|+++|.+|+|||||+|+|++..+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~ 141 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA 141 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce
Confidence 3468999999999999999999998753
No 282
>PRK12288 GTPase RsgA; Reviewed
Probab=97.73 E-value=6.6e-05 Score=83.67 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~l 73 (827)
.++++|.+|+|||||||+|+|...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~ 231 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEI 231 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccce
Confidence 4899999999999999999998643
No 283
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.72 E-value=3.6e-05 Score=76.06 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
..++++|..|+|||||||+|++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 6899999999999999999999853
No 284
>PRK13768 GTPase; Provisional
Probab=97.71 E-value=8.1e-05 Score=79.53 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=44.0
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcC-CccEEEeecCCCCcccchHH-----HHHHHHhCCCCCceEEee
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQ-PSCLILAVTPANSDLANSDA-----LQIAGIADPDGYRTIGII 222 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~-~~~iIL~V~~a~~d~~~~d~-----l~la~~~dp~g~rtIgVl 222 (827)
++.+||+||..+.... ......++ +++.. ..+++++|+++.......+. +.+..+. ..+.+.|.|+
T Consensus 98 ~~~~~d~~g~~~~~~~------~~~~~~~~-~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~ 169 (253)
T PRK13768 98 DYVLVDTPGQMELFAF------RESGRKLV-ERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVL 169 (253)
T ss_pred CEEEEeCCcHHHHHhh------hHHHHHHH-HHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEE
Confidence 7899999997654211 11222222 33332 14588888888653333331 1112222 3479999999
Q ss_pred ecCCCCCCcc
Q 003355 223 TKLDIMDRGT 232 (827)
Q Consensus 223 TK~D~~~~~~ 232 (827)
||+|+.+..+
T Consensus 170 nK~D~~~~~~ 179 (253)
T PRK13768 170 NKADLLSEEE 179 (253)
T ss_pred EhHhhcCchh
Confidence 9999997643
No 285
>PRK12289 GTPase RsgA; Reviewed
Probab=97.70 E-value=7.5e-05 Score=83.31 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~l 73 (827)
.++|+|.+|+|||||||+|+|...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~ 198 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVEL 198 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccc
Confidence 5899999999999999999987543
No 286
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00042 Score=83.60 Aligned_cols=171 Identities=23% Similarity=0.293 Sum_probs=92.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCC--------CcccceeecCCCccccChHHHHHHHH
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT--------DEEYGEFLHLPGKRFYDFSEIRREIQ 120 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~--------~~~~~~~~~~~g~~~~d~~~i~~~i~ 120 (827)
-|++||.+|+||||++-.|.+.-.+-.+.. . +-+..... -..|++....+-....+..++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~k----k---V~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGAD----Q---LALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCC----e---EEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 468999999999999999998731111110 0 11111110 11233333233222335555554443
Q ss_pred HhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCccc
Q 003355 121 AQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA 200 (827)
Q Consensus 121 ~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~ 200 (827)
... ..+++||||||..... ..+.+.+..+. . ...+. -+++|+++...
T Consensus 260 ~~~-----------------------~~D~VLIDTAGRs~~d-----~~l~eel~~l~-~-~~~p~-e~~LVLsAt~~-- 306 (767)
T PRK14723 260 ALG-----------------------DKHLVLIDTVGMSQRD-----RNVSEQIAMLC-G-VGRPV-RRLLLLNAASH-- 306 (767)
T ss_pred Hhc-----------------------CCCEEEEeCCCCCccC-----HHHHHHHHHHh-c-cCCCC-eEEEEECCCCc--
Confidence 221 1269999999976432 22233333322 1 12333 45666777642
Q ss_pred chHHHHHHHHhCCCC--CceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCchhhh
Q 003355 201 NSDALQIAGIADPDG--YRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 201 ~~d~l~la~~~dp~g--~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
..+..++++.+.... .-+=+|+||.|....+-.+.+++... .+.+-|++.-.+-++|+.
T Consensus 307 ~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~--~lPI~yit~GQ~VPdDL~ 367 (767)
T PRK14723 307 GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRH--RLPVHYVSTGQKVPEHLE 367 (767)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHHH--CCCeEEEecCCCChhhcc
Confidence 233334666665321 35668899999998766655554332 355677877777777764
No 287
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.67 E-value=0.00012 Score=77.86 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=22.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
..++++|..|+|||||||+|+|...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 4799999999999999999998754
No 288
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.67 E-value=0.00067 Score=65.82 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=41.7
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccc---hHHHHHHHH-hC-CCCCceEEee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGI-AD-PDGYRTIGII 222 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~d~l~la~~-~d-p~g~rtIgVl 222 (827)
..|.|+||.| ++.++.++++|.++.-.++| |-+.....+- .+.+.-|+. +. |...=...|-
T Consensus 58 iklqlwdtag-------------qerfrsitksyyrnsvgvll-vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVG 123 (213)
T KOG0091|consen 58 IKLQLWDTAG-------------QERFRSITKSYYRNSVGVLL-VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVG 123 (213)
T ss_pred EEEEEeeccc-------------hHHHHHHHHHHhhcccceEE-EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEec
Confidence 3689999999 56899999999998864444 4333222111 112222332 22 4333345677
Q ss_pred ecCCCCCC
Q 003355 223 TKLDIMDR 230 (827)
Q Consensus 223 TK~D~~~~ 230 (827)
+|.|+...
T Consensus 124 hKsDL~Sq 131 (213)
T KOG0091|consen 124 HKSDLQSQ 131 (213)
T ss_pred cccchhhh
Confidence 99999853
No 289
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.67 E-value=0.00084 Score=73.62 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.-..|+|+|.+|+|||||++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999998864
No 290
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00011 Score=82.15 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=54.5
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCC--------CCceEE
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPD--------GYRTIG 220 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~--------g~rtIg 220 (827)
+++||||||..... ..+.+.+..+ . ....+ .-.++|++|+.....-+ ..++.+... ..-+=+
T Consensus 217 DlVLIDTaG~~~~d-----~~l~e~La~L-~-~~~~~-~~~lLVLsAts~~~~l~--evi~~f~~~~~~p~~~~~~~~~~ 286 (374)
T PRK14722 217 HMVLIDTIGMSQRD-----RTVSDQIAML-H-GADTP-VQRLLLLNATSHGDTLN--EVVQAYRSAAGQPKAALPDLAGC 286 (374)
T ss_pred CEEEEcCCCCCccc-----HHHHHHHHHH-h-ccCCC-CeEEEEecCccChHHHH--HHHHHHHHhhcccccccCCCCEE
Confidence 79999999976431 1222232222 1 11222 24566777766543322 223332211 124567
Q ss_pred eeecCCCCCCcccHHHhhccccccccceEEEEEcCCchhhh
Q 003355 221 IITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 221 VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
|+||.|.....-.+.+++.. ..+.+.|++.-.+-++|+.
T Consensus 287 I~TKlDEt~~~G~~l~~~~~--~~lPi~yvt~Gq~VPedl~ 325 (374)
T PRK14722 287 ILTKLDEASNLGGVLDTVIR--YKLPVHYVSTGQKVPENLY 325 (374)
T ss_pred EEeccccCCCccHHHHHHHH--HCcCeEEEecCCCCCcccc
Confidence 88999999875555544432 2455677777667666654
No 291
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.65 E-value=0.0001 Score=82.75 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=22.2
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
..|+|||.+|+|||||||+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999999864
No 292
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.0004 Score=78.96 Aligned_cols=100 Identities=19% Similarity=0.119 Sum_probs=56.4
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
++.||||+|..... ....+.+..+. . ...+. -.++|++|+... .+..++++.+... .-+=+|+||.|..
T Consensus 271 d~VLIDTaGrsqrd-----~~~~~~l~~l~-~-~~~~~-~~~LVl~at~~~--~~~~~~~~~f~~~-~~~~~I~TKlDEt 339 (420)
T PRK14721 271 HMVLIDTVGMSQRD-----QMLAEQIAMLS-Q-CGTQV-KHLLLLNATSSG--DTLDEVISAYQGH-GIHGCIITKVDEA 339 (420)
T ss_pred CEEEecCCCCCcch-----HHHHHHHHHHh-c-cCCCc-eEEEEEcCCCCH--HHHHHHHHHhcCC-CCCEEEEEeeeCC
Confidence 68999999986531 12222333321 1 11232 455666766433 3344566666654 4556789999999
Q ss_pred CCcccHHHhhccccccccceEEEEEcCCchhhh
Q 003355 229 DRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
...-.+.+++.. ..+.+.|++.-.+-++|+.
T Consensus 340 ~~~G~~l~~~~~--~~lPi~yvt~Gq~VP~Dl~ 370 (420)
T PRK14721 340 ASLGIALDAVIR--RKLVLHYVTNGQKVPEDLH 370 (420)
T ss_pred CCccHHHHHHHH--hCCCEEEEECCCCchhhhh
Confidence 876555555433 2345567666555555553
No 293
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00033 Score=84.26 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=81.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.+-.|.++|.--+|||||.++|+=.. |...+ + |+. ..|..+.|+.+..++
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k-~--------------G~v--~~g~~~~D~~e~Eqe------- 58 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISK-I--------------GEV--HDGAATMDWMEQEQE------- 58 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCC-C--------------ccc--cCCCccCCCcHHHHh-------
Confidence 45679999999999999999998321 11111 0 000 112234444333221
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
.|++-..-.+.+++.+...++||||||..+-. .-+...++-.+ ..++|++|..+..-+. .
T Consensus 59 -----RGITI~saa~s~~~~~~~~iNlIDTPGHVDFt-------------~EV~rslrvlD-gavvVvdaveGV~~QT-E 118 (697)
T COG0480 59 -----RGITITSAATTLFWKGDYRINLIDTPGHVDFT-------------IEVERSLRVLD-GAVVVVDAVEGVEPQT-E 118 (697)
T ss_pred -----cCCEEeeeeeEEEEcCceEEEEeCCCCccccH-------------HHHHHHHHhhc-ceEEEEECCCCeeecH-H
Confidence 23332222333333324578999999976432 11233444444 4455566776666555 4
Q ss_pred HHHHHhCCCCCceEEeeecCCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+.++.+..+.|.|+++||+|.+..
T Consensus 119 tv~rqa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 119 TVWRQADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred HHHHHHhhcCCCeEEEEECcccccc
Confidence 7888888889999999999999853
No 294
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.60 E-value=0.00017 Score=79.73 Aligned_cols=25 Identities=36% Similarity=0.642 Sum_probs=23.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
-+++|||-+|+|||||||+|+|...
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc
Confidence 4599999999999999999999975
No 295
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00037 Score=79.64 Aligned_cols=116 Identities=20% Similarity=0.293 Sum_probs=76.8
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
...|-|+|+|.--.||||||-+|-+..+-+...|--|.-. |
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhI--------------G------------------------- 43 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI--------------G------------------------- 43 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEe--------------e-------------------------
Confidence 4579999999999999999999988877555444332111 0
Q ss_pred hhcCCCCcccccceEEEEecC--CcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch
Q 003355 125 KEAGGNKGVSDKQIRLKIFSP--HVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p--~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (827)
...+..+ ..+.++|+||||- +.+..|=.+=. +-.+|.++|++++..+-.|
T Consensus 44 --------------A~~v~~~~~~~~~itFiDTPGH-------------eAFt~mRaRGa-~vtDIaILVVa~dDGv~pQ 95 (509)
T COG0532 44 --------------AYQVPLDVIKIPGITFIDTPGH-------------EAFTAMRARGA-SVTDIAILVVAADDGVMPQ 95 (509)
T ss_pred --------------eEEEEeccCCCceEEEEcCCcH-------------HHHHHHHhcCC-ccccEEEEEEEccCCcchh
Confidence 0111111 3467999999993 23333311111 3345777788888876544
Q ss_pred --HHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 203 --DALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 203 --d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
++...++.. +.|+|+.+||+|+.+.
T Consensus 96 TiEAI~hak~a---~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 96 TIEAINHAKAA---GVPIVVAINKIDKPEA 122 (509)
T ss_pred HHHHHHHHHHC---CCCEEEEEecccCCCC
Confidence 455666655 6999999999999954
No 296
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.59 E-value=0.0014 Score=62.66 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=46.1
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCC--CCceEEeeecC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPD--GYRTIGIITKL 225 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~--g~rtIgVlTK~ 225 (827)
..|.++||.| .+.++.|+..|.+.++.+|++. +.....+-....+++.++... ..+-+.|-||.
T Consensus 57 VkLqIwDtAG-------------qErFrtitstyyrgthgv~vVY-DVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~ 122 (198)
T KOG0079|consen 57 VKLQIWDTAG-------------QERFRTITSTYYRGTHGVIVVY-DVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKN 122 (198)
T ss_pred EEEEEeeccc-------------HHHHHHHHHHHccCCceEEEEE-ECcchhhhHhHHHHHHHHHhcCccccceecccCC
Confidence 3688999999 5789999999999998665553 332222111112344433322 47788999999
Q ss_pred CCCCCc
Q 003355 226 DIMDRG 231 (827)
Q Consensus 226 D~~~~~ 231 (827)
|..++.
T Consensus 123 d~~~Rr 128 (198)
T KOG0079|consen 123 DDPERR 128 (198)
T ss_pred CCccce
Confidence 998653
No 297
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.59 E-value=0.00035 Score=68.64 Aligned_cols=66 Identities=17% Similarity=0.284 Sum_probs=43.7
Q ss_pred EEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH-HHHHHHhCC--CCCceEEeeecCC
Q 003355 150 ITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-LQIAGIADP--DGYRTIGIITKLD 226 (827)
Q Consensus 150 ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~-l~la~~~dp--~g~rtIgVlTK~D 226 (827)
+.+|||.| .+.+..++..|.+.+.+-+|+... .|-..-++ +.+-+++.. ...||++|-||+|
T Consensus 71 ~mlWdtag-------------qeEfDaItkAyyrgaqa~vLVFST--TDr~SFea~~~w~~kv~~e~~~IPtV~vqNKID 135 (246)
T KOG4252|consen 71 SMLWDTAG-------------QEEFDAITKAYYRGAQASVLVFST--TDRYSFEATLEWYNKVQKETERIPTVFVQNKID 135 (246)
T ss_pred HHHHHhcc-------------chhHHHHHHHHhccccceEEEEec--ccHHHHHHHHHHHHHHHHHhccCCeEEeeccch
Confidence 56899998 346677788899977755555432 33333333 344444432 2589999999999
Q ss_pred CCCC
Q 003355 227 IMDR 230 (827)
Q Consensus 227 ~~~~ 230 (827)
+++.
T Consensus 136 lved 139 (246)
T KOG4252|consen 136 LVED 139 (246)
T ss_pred hhHh
Confidence 9974
No 298
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.58 E-value=0.00042 Score=74.58 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=59.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.++.||||||-.... ...++ .+.+++. .. +++ .+++|++|+.. .+++...++.+... .-.=+|+||.|.
T Consensus 155 ~D~ViIDt~Gr~~~~----~~~l~-el~~~~~-~~-~~~-~~~LVl~a~~~--~~d~~~~~~~f~~~-~~~~~I~TKlDe 223 (270)
T PRK06731 155 VDYILIDTAGKNYRA----SETVE-EMIETMG-QV-EPD-YICLTLSASMK--SKDMIEIITNFKDI-HIDGIVFTKFDE 223 (270)
T ss_pred CCEEEEECCCCCcCC----HHHHH-HHHHHHh-hh-CCC-eEEEEEcCccC--HHHHHHHHHHhCCC-CCCEEEEEeecC
Confidence 379999999975321 11222 2222221 12 344 46667776543 34556788888764 556678999999
Q ss_pred CCCcccHHHhhccccccccceEEEEEcCCchhhh
Q 003355 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
...+-.+.++... ..+.+-|++.-.+-++|+.
T Consensus 224 t~~~G~~l~~~~~--~~~Pi~~it~Gq~vp~di~ 255 (270)
T PRK06731 224 TASSGELLKIPAV--SSAPIVLMTDGQDVKKNIH 255 (270)
T ss_pred CCCccHHHHHHHH--HCcCEEEEeCCCCCCcchh
Confidence 9876555544432 2345667776666666653
No 299
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.58 E-value=0.0019 Score=67.88 Aligned_cols=222 Identities=18% Similarity=0.242 Sum_probs=110.4
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccc------------eee----c-CCCcc
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYG------------EFL----H-LPGKR 108 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~------------~~~----~-~~g~~ 108 (827)
..+-|+|||--||||+|++..|.+.-. .... .|.++.|-..-..-.|+ +.. . -.|-.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~-~~~~-----ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI 91 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH-AKKT-----PPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI 91 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh-hccC-----CCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcch
Confidence 455789999999999999999886411 1111 15666554332211221 111 0 11222
Q ss_pred c-------cChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcC---CCCCCchHHHHHHHHHH
Q 003355 109 F-------YDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKV---PVGEQPADIEARIRTMI 178 (827)
Q Consensus 109 ~-------~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~---~~~~q~~di~~~i~~lv 178 (827)
. +.|+++...|+...+. .+..||||||=+.. +..+ ..|.
T Consensus 92 ~TsLNLF~tk~dqv~~~iek~~~~----------------------~~~~liDTPGQIE~FtWSAsG------sIIt--- 140 (366)
T KOG1532|consen 92 VTSLNLFATKFDQVIELIEKRAEE----------------------FDYVLIDTPGQIEAFTWSASG------SIIT--- 140 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcc----------------------cCEEEEcCCCceEEEEecCCc------cchH---
Confidence 1 2344444444433321 35899999996432 2111 1111
Q ss_pred HHHhcCCccEEEeecCCCCcc--cc--hHHHHHHHHhCCCCCceEEeeecCCCCCCcc--cHH-H--hhccccccccceE
Q 003355 179 MSYIKQPSCLILAVTPANSDL--AN--SDALQIAGIADPDGYRTIGIITKLDIMDRGT--DAR-N--LLLGKVIPLRLGY 249 (827)
Q Consensus 179 ~~yi~~~~~iIL~V~~a~~d~--~~--~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~--~~~-~--~l~~~~~~l~lG~ 249 (827)
.....--.+++..|++....- ++ +..+.-+..+-....++|+|+||.|+.+.+- +|. + .++........+|
T Consensus 141 e~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y 220 (366)
T KOG1532|consen 141 ETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSY 220 (366)
T ss_pred hhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccch
Confidence 122233346777777654321 11 2234445555566799999999999998642 111 1 1111111123344
Q ss_pred EEEEcCCchhhhhhhhHHHHHHHHHhhccCCCcc-ccccccCCchHHHHHHHHHHHHHHHhhccchHH
Q 003355 250 VGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVY-NGLADRCGVPQLAKKLNQILVQHIKAILPGLKS 316 (827)
Q Consensus 250 ~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~~-~~~~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~ 316 (827)
+.-..| |+ ++. -.+|+.+-..- .+.....|...+...+.+.+.+.-..--|....
T Consensus 221 ~s~l~~---------Sm--SL~-leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ykp~~Ek 276 (366)
T KOG1532|consen 221 MSNLTR---------SM--SLM-LEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYKPEYEK 276 (366)
T ss_pred hHHhhh---------hH--HHH-HHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 322111 11 111 23455442111 112345777777777777777766666665543
No 300
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00064 Score=75.45 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=50.3
Q ss_pred cccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc-------ccch--
Q 003355 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-------LANS-- 202 (827)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-------~~~~-- 202 (827)
|++-+.-....+.+ ...+|++|+||.. ..+.+|+...- ++|+.||+ ++|+.+ ...+
T Consensus 70 GvTi~~~~~~fet~-k~~~tIiDaPGHr------------dFvknmItGas-qAD~aVLV-V~a~~~efE~g~~~~gQtr 134 (428)
T COG5256 70 GVTIDVAHSKFETD-KYNFTIIDAPGHR------------DFVKNMITGAS-QADVAVLV-VDARDGEFEAGFGVGGQTR 134 (428)
T ss_pred ceEEEEEEEEeecC-CceEEEeeCCchH------------HHHHHhhcchh-hccEEEEE-EECCCCccccccccCCchh
Confidence 44433333333333 3489999999932 36777765544 45655555 556555 3333
Q ss_pred HHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 203 DALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 203 d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+-..+++.+. -...|+++||+|.++-
T Consensus 135 EH~~La~tlG--i~~lIVavNKMD~v~w 160 (428)
T COG5256 135 EHAFLARTLG--IKQLIVAVNKMDLVSW 160 (428)
T ss_pred HHHHHHHhcC--CceEEEEEEccccccc
Confidence 3345666554 4789999999999973
No 301
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00089 Score=77.53 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=54.7
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.+++||||||..... ....+.+..+ ... ... ..++|++++.. ..+...+++.+... ...-+|+||+|.
T Consensus 429 ~DLVLIDTaG~s~~D-----~~l~eeL~~L-~aa-~~~--a~lLVLpAtss--~~Dl~eii~~f~~~-~~~gvILTKlDE 496 (559)
T PRK12727 429 YKLVLIDTAGMGQRD-----RALAAQLNWL-RAA-RQV--TSLLVLPANAH--FSDLDEVVRRFAHA-KPQGVVLTKLDE 496 (559)
T ss_pred CCEEEecCCCcchhh-----HHHHHHHHHH-HHh-hcC--CcEEEEECCCC--hhHHHHHHHHHHhh-CCeEEEEecCcC
Confidence 379999999986321 1111222222 222 222 34555566643 23333455555432 456799999999
Q ss_pred CCCcccHHHhhccccccccceEEEEEcCCchhhh
Q 003355 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
....-.+.+++.. ..+.+-|++.-.+-.+|+.
T Consensus 497 t~~lG~aLsv~~~--~~LPI~yvt~GQ~VPeDL~ 528 (559)
T PRK12727 497 TGRFGSALSVVVD--HQMPITWVTDGQRVPDDLH 528 (559)
T ss_pred ccchhHHHHHHHH--hCCCEEEEeCCCCchhhhh
Confidence 8765555554432 3355677776666556553
No 302
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00066 Score=75.66 Aligned_cols=172 Identities=18% Similarity=0.167 Sum_probs=87.2
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeecc--CCCcccceeecCCCc---cccChHHHHHHHHHh
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQT--KTDEEYGEFLHLPGK---RFYDFSEIRREIQAQ 122 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~--~~~~~~~~~~~~~g~---~~~d~~~i~~~i~~~ 122 (827)
..|+++|.+|+||||++..|... +...+. ....+..-.. .....|..+...-+- ...+..++.+.+...
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~-l~~~g~-----~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l 280 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQ-LLKQNR-----TVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYM 280 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHcCC-----eEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHH
Confidence 35789999999999999999854 222221 1111111000 001123222211121 123455555544332
Q ss_pred hhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCccEEEeecCCCCccc
Q 003355 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLA 200 (827)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~ 200 (827)
... ...+++||||||..... ...+.++ ..++. .++ .+++|.+++. .
T Consensus 281 ~~~--------------------~~~D~VLIDTAGr~~~d--------~~~l~EL-~~l~~~~~p~-~~~LVLsag~--~ 328 (407)
T PRK12726 281 TYV--------------------NCVDHILIDTVGRNYLA--------EESVSEI-SAYTDVVHPD-LTCFTFSSGM--K 328 (407)
T ss_pred Hhc--------------------CCCCEEEEECCCCCccC--------HHHHHHH-HHHhhccCCc-eEEEECCCcc--c
Confidence 210 01379999999975421 1122222 22332 343 5556666643 3
Q ss_pred chHHHHHHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCchhh
Q 003355 201 NSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 260 (827)
Q Consensus 201 ~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~ 260 (827)
..+...+++.+... .-.-+|+||.|....+-.+.++... ..+.+-|++.-.+-++|+
T Consensus 329 ~~d~~~i~~~f~~l-~i~glI~TKLDET~~~G~~Lsv~~~--tglPIsylt~GQ~VpdDi 385 (407)
T PRK12726 329 SADVMTILPKLAEI-PIDGFIITKMDETTRIGDLYTVMQE--TNLPVLYMTDGQNITENI 385 (407)
T ss_pred HHHHHHHHHhcCcC-CCCEEEEEcccCCCCccHHHHHHHH--HCCCEEEEecCCCCCccc
Confidence 34455666666543 4556779999998776555444322 234455666555544443
No 303
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.52 E-value=0.0011 Score=73.08 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=53.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHH---HHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTM---IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~l---v~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK 224 (827)
.+++||||||..... ....+.++.+ +...+.....-+++|++|+.. ++++.-++.....-..+-+|+||
T Consensus 197 ~D~ViIDTaGr~~~~-----~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g---~~~~~~a~~f~~~~~~~giIlTK 268 (318)
T PRK10416 197 IDVLIIDTAGRLHNK-----TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG---QNALSQAKAFHEAVGLTGIILTK 268 (318)
T ss_pred CCEEEEeCCCCCcCC-----HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC---hHHHHHHHHHHhhCCCCEEEEEC
Confidence 479999999986432 1122233332 222233333456777777743 33344455554434567889999
Q ss_pred CCCCCCcccHHHhhccccccccceEEEE
Q 003355 225 LDIMDRGTDARNLLLGKVIPLRLGYVGV 252 (827)
Q Consensus 225 ~D~~~~~~~~~~~l~~~~~~l~lG~~~V 252 (827)
.|....+-.+.+++.. ..+.+-|+++
T Consensus 269 lD~t~~~G~~l~~~~~--~~~Pi~~v~~ 294 (318)
T PRK10416 269 LDGTAKGGVVFAIADE--LGIPIKFIGV 294 (318)
T ss_pred CCCCCCccHHHHHHHH--HCCCEEEEeC
Confidence 9988766555544422 2444556653
No 304
>PRK13796 GTPase YqeH; Provisional
Probab=97.50 E-value=0.0001 Score=82.91 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
..++|||.+|+|||||||+|++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 369999999999999999999753
No 305
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0005 Score=69.82 Aligned_cols=69 Identities=28% Similarity=0.400 Sum_probs=41.9
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcC--CccEEEeecCCCCcccc-hHHHH----HHHHh--CCCCCceE
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQ--PSCLILAVTPANSDLAN-SDALQ----IAGIA--DPDGYRTI 219 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~--~~~iIL~V~~a~~d~~~-~d~l~----la~~~--dp~g~rtI 219 (827)
+++|||+||-. ..+.-+..|... .-..|++|+++-....+ .++-. ++-.- -..+.+++
T Consensus 83 ~~~LVD~PGH~-------------rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vL 149 (238)
T KOG0090|consen 83 NVTLVDLPGHS-------------RLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVL 149 (238)
T ss_pred ceEEEeCCCcH-------------HHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEE
Confidence 47999999954 455556677773 23356666655544332 23212 22222 24568899
Q ss_pred EeeecCCCCCC
Q 003355 220 GIITKLDIMDR 230 (827)
Q Consensus 220 gVlTK~D~~~~ 230 (827)
+.+||-|+...
T Consensus 150 IaCNKqDl~tA 160 (238)
T KOG0090|consen 150 IACNKQDLFTA 160 (238)
T ss_pred EEecchhhhhc
Confidence 99999999853
No 306
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.48 E-value=0.0015 Score=74.84 Aligned_cols=102 Identities=22% Similarity=0.208 Sum_probs=57.2
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.++.||||||..... ......+..++.. ...+ .-+++|++++.. ..+..++++.+...+. .-+|+||+|.
T Consensus 300 ~DlVlIDt~G~~~~d-----~~~~~~L~~ll~~-~~~~-~~~~LVl~a~~~--~~~l~~~~~~f~~~~~-~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRD-----KRLIEELKALIEF-SGEP-IDVYLVLSATTK--YEDLKDIYKHFSRLPL-DGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCC-----HHHHHHHHHHHhc-cCCC-CeEEEEEECCCC--HHHHHHHHHHhCCCCC-CEEEEecccc
Confidence 379999999985431 1112234444431 1123 244555666543 2344466667765443 4588999999
Q ss_pred CCCcccHHHhhccccccccceEEEEEcCCchhhh
Q 003355 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
........+++... .+.+.|++.-.+-++|+.
T Consensus 370 t~~~G~i~~~~~~~--~lPv~yit~Gq~VpdDl~ 401 (424)
T PRK05703 370 TSSLGSILSLLIES--GLPISYLTNGQRVPDDIK 401 (424)
T ss_pred cccccHHHHHHHHH--CCCEEEEeCCCCChhhhh
Confidence 87655555554332 344566666555555543
No 307
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.46 E-value=0.00063 Score=66.80 Aligned_cols=45 Identities=29% Similarity=0.286 Sum_probs=32.1
Q ss_pred CchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 23 ~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
..+-.+.+.|.+.+... -...+|+++|.+++||||++|+|.+...
T Consensus 82 ~gi~~L~~~l~~~~~~~-----~~~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 82 LGTKILRRTIKELAKID-----GKEGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred ccHHHHHHHHHHHHhhc-----CCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34555666666554321 1346789999999999999999998653
No 308
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.46 E-value=0.00027 Score=70.08 Aligned_cols=120 Identities=17% Similarity=0.350 Sum_probs=75.6
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
-.|-.|++.|+.|+|||||+|.++..+|. ..+...+ |
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~----------------------~qykaTI---g------------------ 43 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFS----------------------QQYKATI---G------------------ 43 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHH----------------------HHhcccc---c------------------
Confidence 35678999999999999999999988762 0111000 0
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEee-cCCCCcccchH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAV-TPANSDLANSD 203 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V-~~a~~d~~~~d 203 (827)
...-.-.+.|. .....|.++||.| ++.++.+-..|.+.++|.+|+. ++....+.+-+
T Consensus 44 --------adFltKev~Vd-~~~vtlQiWDTAG-------------QERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~ 101 (210)
T KOG0394|consen 44 --------ADFLTKEVQVD-DRSVTLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNNPKSFENLE 101 (210)
T ss_pred --------hhheeeEEEEc-CeEEEEEEEeccc-------------HHHhhhcccceecCCceEEEEeecCChhhhccHH
Confidence 00001122222 2334689999999 4577777778888888776662 33323333322
Q ss_pred H--HHHHHHhCC---CCCceEEeeecCCCCC
Q 003355 204 A--LQIAGIADP---DGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 ~--l~la~~~dp---~g~rtIgVlTK~D~~~ 229 (827)
. -+++.+.+| ..=|.|++-||+|+-.
T Consensus 102 ~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 102 NWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred HHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 2 246666654 4568899999999976
No 309
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.46 E-value=0.00083 Score=65.45 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=72.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
--+|.++|--||||||+++.|.|.+ .+.-.+|.+.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~---~~~i~pt~gf------------------------------------------ 50 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGED---TDTISPTLGF------------------------------------------ 50 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCC---ccccCCccce------------------------------------------
Confidence 4579999999999999999999986 2222222221
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
--. ++++. ...++++|.-| +..++..-.+|....+.+|.+| +......-++...
T Consensus 51 -------~Ik--tl~~~---~~~L~iwDvGG-------------q~~lr~~W~nYfestdglIwvv-DssD~~r~~e~~~ 104 (185)
T KOG0073|consen 51 -------QIK--TLEYK---GYTLNIWDVGG-------------QKTLRSYWKNYFESTDGLIWVV-DSSDRMRMQECKQ 104 (185)
T ss_pred -------eeE--EEEec---ceEEEEEEcCC-------------cchhHHHHHHhhhccCeEEEEE-ECchHHHHHHHHH
Confidence 001 11111 12589999887 2356777788999888555554 5455555555444
Q ss_pred HHHHhC----CCCCceEEeeecCCCC
Q 003355 207 IAGIAD----PDGYRTIGIITKLDIM 228 (827)
Q Consensus 207 la~~~d----p~g~rtIgVlTK~D~~ 228 (827)
..+.+- -.|.+.+++.||.|+.
T Consensus 105 ~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 105 ELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred HHHHHHhhhhhcCCceEEEEecCcCc
Confidence 333322 2378999999999998
No 310
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0011 Score=75.00 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=58.8
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc-CCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK-QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~-~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D 226 (827)
.++.||||||...... ..+ +.+..+. ..+. ....-+++|++|+... .+....++.+... .-+=+|+||.|
T Consensus 300 ~D~VLIDTaGr~~rd~----~~l-~eL~~~~-~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~-~~~glIlTKLD 370 (432)
T PRK12724 300 SELILIDTAGYSHRNL----EQL-ERMQSFY-SCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL-NYRRILLTKLD 370 (432)
T ss_pred CCEEEEeCCCCCccCH----HHH-HHHHHHH-HhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC-CCCEEEEEccc
Confidence 3789999999853210 112 2233332 2221 1223456667776543 2334566666443 45667899999
Q ss_pred CCCCcccHHHhhccccccccceEEEEEcCCchhhh
Q 003355 227 IMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
....+-.+.+++.. ..+.+-|++.-.+-++|+.
T Consensus 371 Et~~~G~il~i~~~--~~lPI~ylt~GQ~VPeDi~ 403 (432)
T PRK12724 371 EADFLGSFLELADT--YSKSFTYLSVGQEVPFDIL 403 (432)
T ss_pred CCCCccHHHHHHHH--HCCCEEEEecCCCCCCCHH
Confidence 99876555544432 3455667777777777764
No 311
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0013 Score=65.34 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=74.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
-+-.++++|+.++|||.||-.+++..|.|.-.- | | .-+++..
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~--T-----i-------Gvefg~r------------------------ 46 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDL--T-----I-------GVEFGAR------------------------ 46 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccc--e-----e-------eeeecee------------------------
Confidence 345789999999999999999999998655331 1 1 0111110
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc-cc-chH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LA-NSD 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~-~~d 203 (827)
...+...+ ..|.++||.| .+.++.++.+|.+.+...||+..-.+.+ +. -..
T Consensus 47 ----~~~id~k~----------IKlqiwDtaG-------------qe~frsv~~syYr~a~GalLVydit~r~sF~hL~~ 99 (216)
T KOG0098|consen 47 ----MVTIDGKQ----------IKLQIWDTAG-------------QESFRSVTRSYYRGAAGALLVYDITRRESFNHLTS 99 (216)
T ss_pred ----EEEEcCce----------EEEEEEecCC-------------cHHHHHHHHHHhccCcceEEEEEccchhhHHHHHH
Confidence 00111111 2578999999 3578999999999887666664222211 11 111
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
+|.-+++......-++++-||+|+....
T Consensus 100 wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 100 WLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 2334444443345566777999998653
No 312
>PRK14974 cell division protein FtsY; Provisional
Probab=97.38 E-value=0.00063 Score=75.40 Aligned_cols=91 Identities=22% Similarity=0.317 Sum_probs=54.7
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.+++||||||..... .+.-+.++.+.+ ..+++ .+++|+++.. .+++...++.+...-.-.-+|+||+|.
T Consensus 223 ~DvVLIDTaGr~~~~-----~~lm~eL~~i~~--~~~pd-~~iLVl~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTD-----ANLMDELKKIVR--VTKPD-LVIFVGDALA---GNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCc-----HHHHHHHHHHHH--hhCCc-eEEEeecccc---chhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 369999999986532 223334444321 22455 5566777754 346666677665544557889999999
Q ss_pred CCCcccHHHhhccccccccceEEE
Q 003355 228 MDRGTDARNLLLGKVIPLRLGYVG 251 (827)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~ 251 (827)
...+-.+..+... ..+.+-|++
T Consensus 292 ~~~~G~~ls~~~~--~~~Pi~~i~ 313 (336)
T PRK14974 292 DAKGGAALSIAYV--IGKPILFLG 313 (336)
T ss_pred CCCccHHHHHHHH--HCcCEEEEe
Confidence 8876555444432 234445555
No 313
>PRK00098 GTPase RsgA; Reviewed
Probab=97.38 E-value=0.00058 Score=74.78 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=22.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
-.++++|.+|+|||||||+|+|..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 369999999999999999999975
No 314
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0011 Score=74.91 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=58.7
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.+++||||||.... ....+. .+..++.. +. ++.-+++|++|+.. ..+..++.+.+... ..+=+|+||.|.
T Consensus 255 ~DlVLIDTaGr~~~----~~~~l~-el~~~l~~-~~-~~~e~~LVlsat~~--~~~~~~~~~~~~~~-~~~~~I~TKlDe 324 (388)
T PRK12723 255 FDLVLVDTIGKSPK----DFMKLA-EMKELLNA-CG-RDAEFHLAVSSTTK--TSDVKEIFHQFSPF-SYKTVIFTKLDE 324 (388)
T ss_pred CCEEEEcCCCCCcc----CHHHHH-HHHHHHHh-cC-CCCeEEEEEcCCCC--HHHHHHHHHHhcCC-CCCEEEEEeccC
Confidence 37999999997632 111122 22222222 22 23346677787765 33334566666543 356678999999
Q ss_pred CCCcccHHHhhccccccccceEEEEEcCCchhhh
Q 003355 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
...+-.+.+++... .+.+.|++.-.+-++|+.
T Consensus 325 t~~~G~~l~~~~~~--~~Pi~yit~Gq~vPeDl~ 356 (388)
T PRK12723 325 TTCVGNLISLIYEM--RKEVSYVTDGQIVPHNIS 356 (388)
T ss_pred CCcchHHHHHHHHH--CCCEEEEeCCCCChhhhh
Confidence 98766655554332 344567777666666654
No 315
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.00085 Score=68.05 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=71.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
-+-.||++|+.++|||-||..++--.|-+- ++-.+-+. |
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~-----SksTIGve------------f------------------------ 51 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLE-----SKSTIGVE------------F------------------------ 51 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcc-----cccceeEE------------E------------------------
Confidence 456799999999999999999988776321 11111111 0
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
....+.|.+ ......|+||.| ++..+.++..|.+.+...+|+- +.....+-.-..
T Consensus 52 ----------~t~t~~vd~-k~vkaqIWDTAG-------------QERyrAitSaYYrgAvGAllVY-DITr~~Tfenv~ 106 (222)
T KOG0087|consen 52 ----------ATRTVNVDG-KTVKAQIWDTAG-------------QERYRAITSAYYRGAVGALLVY-DITRRQTFENVE 106 (222)
T ss_pred ----------EeeceeecC-cEEEEeeecccc-------------hhhhccccchhhcccceeEEEE-echhHHHHHHHH
Confidence 011111111 113578999999 4577888889999887666553 222111111112
Q ss_pred HHHHHh---CCCCCceEEeeecCCCCC
Q 003355 206 QIAGIA---DPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 ~la~~~---dp~g~rtIgVlTK~D~~~ 229 (827)
++++++ ......+++|-||+|+..
T Consensus 107 rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 107 RWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred HHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 333333 333577888999999986
No 316
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.32 E-value=0.00048 Score=74.26 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-..|++|..|+|||||||+|.+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCch
Confidence 46899999999999999999985
No 317
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.31 E-value=0.00086 Score=77.00 Aligned_cols=119 Identities=20% Similarity=0.288 Sum_probs=70.4
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
--+|||||+.++||||||-+|++.+|.| .++-|.|-+. .|
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~---~VP~rl~~i~----------------IP--------------------- 48 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVD---AVPRRLPRIL----------------IP--------------------- 48 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccc---cccccCCccc----------------cC---------------------
Confidence 3489999999999999999999998732 2222222000 01
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCC----Ccccch
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN----SDLANS 202 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~----~d~~~~ 202 (827)
.. ..|.....++||++--. ..+..+.+-+++++ +|+.|-+++ .|--..
T Consensus 49 ----ad----------vtPe~vpt~ivD~ss~~-------------~~~~~l~~EirkA~-vi~lvyavd~~~T~D~ist 100 (625)
T KOG1707|consen 49 ----AD----------VTPENVPTSIVDTSSDS-------------DDRLCLRKEIRKAD-VICLVYAVDDESTVDRIST 100 (625)
T ss_pred ----Cc----------cCcCcCceEEEeccccc-------------chhHHHHHHHhhcC-EEEEEEecCChHHhhhhhh
Confidence 00 12333358999997311 22233445677777 343333222 233334
Q ss_pred HHHHHHHHhCCC--CCceEEeeecCCCCCCccc
Q 003355 203 DALQIAGIADPD--GYRTIGIITKLDIMDRGTD 233 (827)
Q Consensus 203 d~l~la~~~dp~--g~rtIgVlTK~D~~~~~~~ 233 (827)
-++-+.++.... ..|+|.|-||.|..+..+.
T Consensus 101 ~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 101 KWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred hhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 445666666532 5789999999999875443
No 318
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.29 E-value=0.00063 Score=74.11 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=23.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
..++++|..|+|||||||+|+|...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 5799999999999999999999864
No 319
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.29 E-value=0.00022 Score=70.61 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=21.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
|.++++|..+||||||++.+++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 67899999999999999999876
No 320
>PRK10867 signal recognition particle protein; Provisional
Probab=97.28 E-value=0.0019 Score=73.90 Aligned_cols=79 Identities=27% Similarity=0.313 Sum_probs=48.1
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.++.||||||..... ...-..+..+ ...+ .++. +++|+++.. .+++...++.+...-.-+-+|+||+|.
T Consensus 184 ~DvVIIDTaGrl~~d-----~~lm~eL~~i-~~~v-~p~e-vllVlda~~---gq~av~~a~~F~~~~~i~giIlTKlD~ 252 (433)
T PRK10867 184 YDVVIVDTAGRLHID-----EELMDELKAI-KAAV-NPDE-ILLVVDAMT---GQDAVNTAKAFNEALGLTGVILTKLDG 252 (433)
T ss_pred CCEEEEeCCCCcccC-----HHHHHHHHHH-HHhh-CCCe-EEEEEeccc---HHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 479999999975431 2222233232 2233 4543 466777643 467778888777544567789999998
Q ss_pred CCCcccHHHh
Q 003355 228 MDRGTDARNL 237 (827)
Q Consensus 228 ~~~~~~~~~~ 237 (827)
...+-.+..+
T Consensus 253 ~~rgG~alsi 262 (433)
T PRK10867 253 DARGGAALSI 262 (433)
T ss_pred cccccHHHHH
Confidence 7655444443
No 321
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.0005 Score=75.75 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=30.3
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccce
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p 84 (827)
.++.+||-+|+|||||+|||+....-+...-.||--|
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIeP 39 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEP 39 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccC
Confidence 4689999999999999999998875445556677666
No 322
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.25 E-value=0.0031 Score=68.11 Aligned_cols=95 Identities=23% Similarity=0.276 Sum_probs=51.3
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHH---HHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTM---IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~l---v~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK 224 (827)
.++.||||||..... ....+.++.+ +...+....+-+++|++++. ..+++..+..+...-...-+|+||
T Consensus 155 ~D~ViIDT~G~~~~d-----~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~f~~~~~~~g~IlTK 226 (272)
T TIGR00064 155 IDVVLIDTAGRLQNK-----VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT---GQNALEQAKVFNEAVGLTGIILTK 226 (272)
T ss_pred CCEEEEeCCCCCcch-----HHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---CHHHHHHHHHHHhhCCCCEEEEEc
Confidence 479999999976431 1222233332 22223323345666777763 333344444444333457889999
Q ss_pred CCCCCCcccHHHhhccccccccceEEEE
Q 003355 225 LDIMDRGTDARNLLLGKVIPLRLGYVGV 252 (827)
Q Consensus 225 ~D~~~~~~~~~~~l~~~~~~l~lG~~~V 252 (827)
+|....+-.+.++.... .+.+-|++.
T Consensus 227 lDe~~~~G~~l~~~~~~--~~Pi~~~~~ 252 (272)
T TIGR00064 227 LDGTAKGGIILSIAYEL--KLPIKFIGV 252 (272)
T ss_pred cCCCCCccHHHHHHHHH--CcCEEEEeC
Confidence 99987765544443321 244455553
No 323
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.25 E-value=0.0025 Score=62.42 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.2
Q ss_pred EEEEccCCCCHHHHHHHHhCC
Q 003355 50 VAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~ 70 (827)
|.++|..++||||++..|...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999765
No 324
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.24 E-value=0.00022 Score=73.68 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
-+|++||-+|+||||||..|++..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch
Confidence 589999999999999999998764
No 325
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.19 E-value=0.00076 Score=75.26 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=28.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC-CccCCCccccce
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF-LPRGNDICTRRP 84 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~-lP~~~g~~Tr~p 84 (827)
..+.+||-+|+|||||+|+|++... -......||-.|
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p 40 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEP 40 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCC
Confidence 4689999999999999999999974 223335666666
No 326
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0033 Score=70.43 Aligned_cols=68 Identities=24% Similarity=0.269 Sum_probs=43.6
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCC-CceEEeeecCCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDG-YRTIGIITKLDI 227 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g-~rtIgVlTK~D~ 227 (827)
.++|||.||.- +.+..|+.. +.--+ ..++|++++..+..+. .+.+.-+|-.| .+-|+|+||+|.
T Consensus 51 ~~~fIDvpgh~------------~~i~~miag-~~~~d-~alLvV~~deGl~~qt-gEhL~iLdllgi~~giivltk~D~ 115 (447)
T COG3276 51 VMGFIDVPGHP------------DFISNLLAG-LGGID-YALLVVAADEGLMAQT-GEHLLILDLLGIKNGIIVLTKADR 115 (447)
T ss_pred ceEEeeCCCcH------------HHHHHHHhh-hcCCc-eEEEEEeCccCcchhh-HHHHHHHHhcCCCceEEEEecccc
Confidence 68999999953 356666533 22233 5566677776666555 23344444445 455999999999
Q ss_pred CCCc
Q 003355 228 MDRG 231 (827)
Q Consensus 228 ~~~~ 231 (827)
.++.
T Consensus 116 ~d~~ 119 (447)
T COG3276 116 VDEA 119 (447)
T ss_pred ccHH
Confidence 9853
No 327
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.18 E-value=0.0015 Score=67.07 Aligned_cols=117 Identities=20% Similarity=0.235 Sum_probs=69.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||+|.-.+++..|...-.. +. .+.|.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~p-------------ti-ed~y~--------------------------- 41 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDP-------------TI-EDSYR--------------------------- 41 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCC-------------Cc-cccce---------------------------
Confidence 35799999999999999999998876322000 00 00111
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
..+.|. .....|.++||+|-. ....|-..|+...+..+|+. +....-+-.++..
T Consensus 42 -----------k~~~v~-~~~~~l~ilDt~g~~-------------~~~~~~~~~~~~~~gF~lVy-sitd~~SF~~~~~ 95 (196)
T KOG0395|consen 42 -----------KELTVD-GEVCMLEILDTAGQE-------------EFSAMRDLYIRNGDGFLLVY-SITDRSSFEEAKQ 95 (196)
T ss_pred -----------EEEEEC-CEEEEEEEEcCCCcc-------------cChHHHHHhhccCcEEEEEE-ECCCHHHHHHHHH
Confidence 112222 223467899999921 33344557999888665544 3333322233323
Q ss_pred HHHHh----CCCCCceEEeeecCCCCCC
Q 003355 207 IAGIA----DPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 207 la~~~----dp~g~rtIgVlTK~D~~~~ 230 (827)
+...+ +...-|+|.|.||+|+...
T Consensus 96 l~~~I~r~~~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 96 LREQILRVKGRDDVPIILVGNKCDLERE 123 (196)
T ss_pred HHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence 33333 3344699999999999863
No 328
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.18 E-value=0.0016 Score=74.64 Aligned_cols=92 Identities=22% Similarity=0.211 Sum_probs=53.7
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
+++||||||..... .+.-+.++.+. .. ..++ .+++|+++... +++...++.+...-..+-+|+||+|..
T Consensus 177 DvVIIDTAGr~~~d-----~~lm~El~~l~-~~-~~pd-evlLVvda~~g---q~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHALE-----EDLIEEMKEIK-EA-VKPD-EVLLVIDATIG---QQAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccch-----HHHHHHHHHHH-HH-hccc-ceeEEEecccc---HHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 79999999976431 22222333321 22 2444 45667777653 567777887765444567799999998
Q ss_pred CCcccHHHhhccccccccceEEEEE
Q 003355 229 DRGTDARNLLLGKVIPLRLGYVGVV 253 (827)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~lG~~~V~ 253 (827)
..+-.+..+..-. .+.+-|+++-
T Consensus 246 a~~G~~ls~~~~~--~~Pi~fig~G 268 (437)
T PRK00771 246 AKGGGALSAVAET--GAPIKFIGTG 268 (437)
T ss_pred CcccHHHHHHHHH--CcCEEEEecC
Confidence 7765544443222 2334455543
No 329
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.17 E-value=0.00092 Score=68.66 Aligned_cols=97 Identities=21% Similarity=0.240 Sum_probs=50.1
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH-HHHHHHHhCCCCCceEEeeecCCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-ALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d-~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
+++||||||..... .+..+.++++. ..+ .+ +-+++|++++.....-+ +..+.+.+ ..+=+|+||.|.
T Consensus 85 D~vlIDT~Gr~~~d-----~~~~~el~~~~-~~~-~~-~~~~LVlsa~~~~~~~~~~~~~~~~~----~~~~lIlTKlDe 152 (196)
T PF00448_consen 85 DLVLIDTAGRSPRD-----EELLEELKKLL-EAL-NP-DEVHLVLSATMGQEDLEQALAFYEAF----GIDGLILTKLDE 152 (196)
T ss_dssp SEEEEEE-SSSSTH-----HHHHHHHHHHH-HHH-SS-SEEEEEEEGGGGGHHHHHHHHHHHHS----STCEEEEESTTS
T ss_pred CEEEEecCCcchhh-----HHHHHHHHHHh-hhc-CC-ccceEEEecccChHHHHHHHHHhhcc----cCceEEEEeecC
Confidence 79999999976331 22223333332 222 33 35666777776543222 12222222 334567999999
Q ss_pred CCCcccHHHhhccccccccceEEEEEcCCchhh
Q 003355 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 260 (827)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~ 260 (827)
....-...+++.. ..+.+-|++.-.+- +|+
T Consensus 153 t~~~G~~l~~~~~--~~~Pi~~it~Gq~V-~Dl 182 (196)
T PF00448_consen 153 TARLGALLSLAYE--SGLPISYITTGQRV-DDL 182 (196)
T ss_dssp SSTTHHHHHHHHH--HTSEEEEEESSSST-TGE
T ss_pred CCCcccceeHHHH--hCCCeEEEECCCCh-hcC
Confidence 8765554444332 23445566554444 444
No 330
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.13 E-value=0.0032 Score=72.89 Aligned_cols=100 Identities=23% Similarity=0.192 Sum_probs=57.3
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
++.+|||+|..... ..+.+.. .++.... .+.- .++|+++.... .+..+.++.+... ..+-+|+||+|..
T Consensus 336 d~VLIDTaGr~~~d-----~~~~e~~-~~l~~~~-~p~e-~~LVLdAt~~~--~~l~~i~~~f~~~-~~~g~IlTKlDet 404 (484)
T PRK06995 336 HIVLIDTIGMSQRD-----RMVSEQI-AMLHGAG-APVK-RLLLLNATSHG--DTLNEVVQAYRGP-GLAGCILTKLDEA 404 (484)
T ss_pred CeEEeCCCCcChhh-----HHHHHHH-HHHhccC-CCCe-eEEEEeCCCcH--HHHHHHHHHhccC-CCCEEEEeCCCCc
Confidence 68999999976421 1111111 1221211 1222 55666776544 3334567777664 4567789999998
Q ss_pred CCcccHHHhhccccccccceEEEEEcCCchhhh
Q 003355 229 DRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
...-.+.+++... .+.+-|++.-.+-++|+.
T Consensus 405 ~~~G~~l~i~~~~--~lPI~yvt~GQ~VPeDL~ 435 (484)
T PRK06995 405 ASLGGALDVVIRY--KLPLHYVSNGQRVPEDLH 435 (484)
T ss_pred ccchHHHHHHHHH--CCCeEEEecCCCChhhhc
Confidence 7765555554332 445677777766666654
No 331
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0032 Score=71.90 Aligned_cols=131 Identities=15% Similarity=0.237 Sum_probs=72.9
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
+-.+.||-.--.|||||...|+..- | |+-+ +...+.+-|--++.+|
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~t------g--~i~~------------------~~~q~q~LDkl~vERE-------- 105 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELT------G--TIDN------------------NIGQEQVLDKLQVERE-------- 105 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHh------C--CCCC------------------CCchhhhhhhhhhhhh--------
Confidence 4468999999999999999998552 1 0000 0001111122122111
Q ss_pred cCCCCcccc--cceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 127 AGGNKGVSD--KQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 127 ~g~~~~~s~--~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
.|++- ..-.+........-|.||||||-.+-. . -+..-+.-.+ -+|+|++|+++...|..
T Consensus 106 ----RGITIkaQtasify~~~~~ylLNLIDTPGHvDFs--~-----------EVsRslaac~-G~lLvVDA~qGvqAQT~ 167 (650)
T KOG0462|consen 106 ----RGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS--G-----------EVSRSLAACD-GALLVVDASQGVQAQTV 167 (650)
T ss_pred ----cCcEEEeeeeEEEEEcCCceEEEeecCCCccccc--c-----------eehehhhhcC-ceEEEEEcCcCchHHHH
Confidence 23332 222333333223458999999975432 1 1122233334 45556788888777665
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
..+...+. .+...|.|+||+|+-..
T Consensus 168 anf~lAfe-~~L~iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 168 ANFYLAFE-AGLAIIPVLNKIDLPSA 192 (650)
T ss_pred HHHHHHHH-cCCeEEEeeeccCCCCC
Confidence 44444333 46899999999999753
No 332
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.0031 Score=60.49 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=45.6
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcc--cchHHHHHHHHhCCCCCceEEeeecC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--ANSDALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~~d~l~la~~~dp~g~rtIgVlTK~ 225 (827)
..|.++||.| ++.++..+++|.+.+...+|+..-.+.|- +-..++.-++.+.+...-+|.+-||-
T Consensus 58 vKLQIWDTAG-------------QErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKk 124 (214)
T KOG0086|consen 58 VKLQIWDTAG-------------QERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKK 124 (214)
T ss_pred EEEEEeeccc-------------HHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChh
Confidence 3588999999 56899999999998876666543333221 11223444566655545555666898
Q ss_pred CCCCC
Q 003355 226 DIMDR 230 (827)
Q Consensus 226 D~~~~ 230 (827)
|+-..
T Consensus 125 DL~~~ 129 (214)
T KOG0086|consen 125 DLDPE 129 (214)
T ss_pred hcChh
Confidence 88753
No 333
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.04 E-value=0.0021 Score=67.69 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=64.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC--ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g--~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
+|+++|..+|||||..+.|.+.- .|..+. -.|-.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~v------------------------------------------ 37 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDV------------------------------------------ 37 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SE------------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCc------------------------------------------
Confidence 58999999999999999999872 354332 011111
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCC-Ccccc----
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN-SDLAN---- 201 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~-~d~~~---- 201 (827)
-.-.+.......+.|||.||-...-... .. .-++ ...++. ..+++|.++. .++..
T Consensus 38 -----------e~~~v~~~~~~~l~iwD~pGq~~~~~~~----~~-~~~~---~if~~v-~~LIyV~D~qs~~~~~~l~~ 97 (232)
T PF04670_consen 38 -----------EKSHVRFLSFLPLNIWDCPGQDDFMENY----FN-SQRE---EIFSNV-GVLIYVFDAQSDDYDEDLAY 97 (232)
T ss_dssp -----------EEEEEECTTSCEEEEEEE-SSCSTTHTT----HT-CCHH---HHHCTE-SEEEEEEETT-STCHHHHHH
T ss_pred -----------eEEEEecCCCcEEEEEEcCCcccccccc----cc-ccHH---HHHhcc-CEEEEEEEcccccHHHHHHH
Confidence 0111222233478999999975331110 00 0011 122333 3778888887 44322
Q ss_pred -hHHHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 202 -SDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 202 -~d~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
.+.+..+.++.|. .++.+.+.|+|++.++
T Consensus 98 ~~~~i~~l~~~sp~-~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 98 LSDCIEALRQYSPN-IKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHHHHHHHHHSTT--EEEEEEE-CCCS-HH
T ss_pred HHHHHHHHHHhCCC-CeEEEEEeecccCCHH
Confidence 1224556777774 8888999999998744
No 334
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.98 E-value=0.0081 Score=60.06 Aligned_cols=77 Identities=26% Similarity=0.284 Sum_probs=42.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.++.|+||||..... .+.-..+..+. .. ..++ .+++|+++.. ..+++..+..+.....-+-+|+||+|.
T Consensus 83 ~d~viiDt~g~~~~~-----~~~l~~l~~l~-~~-~~~~-~~~lVv~~~~---~~~~~~~~~~~~~~~~~~~viltk~D~ 151 (173)
T cd03115 83 FDVVIVDTAGRLQID-----ENLMEELKKIK-RV-VKPD-EVLLVVDAMT---GQDAVNQAKAFNEALGITGVILTKLDG 151 (173)
T ss_pred CCEEEEECcccchhh-----HHHHHHHHHHH-hh-cCCC-eEEEEEECCC---ChHHHHHHHHHHhhCCCCEEEEECCcC
Confidence 368999999975321 12222333321 12 2344 5555666653 233445555553322357888999999
Q ss_pred CCCcccHH
Q 003355 228 MDRGTDAR 235 (827)
Q Consensus 228 ~~~~~~~~ 235 (827)
..+.....
T Consensus 152 ~~~~g~~~ 159 (173)
T cd03115 152 DARGGAAL 159 (173)
T ss_pred CCCcchhh
Confidence 87655443
No 335
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=96.97 E-value=0.0096 Score=57.61 Aligned_cols=113 Identities=13% Similarity=0.137 Sum_probs=66.5
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHH---HhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAG---IADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~---~~dp~g~rtIgVlTK 224 (827)
.+|.+|||.|- +.+..+---|.+..+..+|+. +..+.-+-+....+.+ .......-.++|-||
T Consensus 62 a~L~IWDTAGQ-------------ErfHALGPIYYRgSnGalLVy-DITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNK 127 (218)
T KOG0088|consen 62 ADLHIWDTAGQ-------------ERFHALGPIYYRGSNGALLVY-DITDRDSFQKVKNWVLELRTMLGNEIELLIVGNK 127 (218)
T ss_pred eeeeeeeccch-------------HhhhccCceEEeCCCceEEEE-eccchHHHHHHHHHHHHHHHHhCCeeEEEEecCc
Confidence 47999999993 345555556888888666663 2222111122122333 333334567889999
Q ss_pred CCCCCCcccHHHhhccccccccceEEEEEcCCchhhhhhhhHHHHHHHHHhhccCCCcc-ccccccCCchHHHHHHHHHH
Q 003355 225 LDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVY-NGLADRCGVPQLAKKLNQIL 303 (827)
Q Consensus 225 ~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~~-~~~~~~~Gi~~L~~~L~~~L 303 (827)
+|+-.+. .++..+|....+..-+. .+ .+.++..||..|.+.|.+..
T Consensus 128 iDLEeeR-------------------------------~Vt~qeAe~YAesvGA~--y~eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 128 IDLEEER-------------------------------QVTRQEAEAYAESVGAL--YMETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred ccHHHhh-------------------------------hhhHHHHHHHHHhhchh--heecccccccCHHHHHHHHHHHH
Confidence 9997532 23445554433222111 12 45678899999999998877
Q ss_pred HHHH
Q 003355 304 VQHI 307 (827)
Q Consensus 304 ~~~I 307 (827)
.+|.
T Consensus 175 iE~~ 178 (218)
T KOG0088|consen 175 IEHS 178 (218)
T ss_pred HHHh
Confidence 6665
No 336
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.94 E-value=0.0019 Score=67.84 Aligned_cols=133 Identities=21% Similarity=0.355 Sum_probs=77.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
.|..||..+-|||||++.|....| ++.+|+..---+.|...+ +++.
T Consensus 44 NilCvGETg~GKsTLmdtLFNt~f---~~~p~~H~~~~V~L~~~T----------------yelq--------------- 89 (406)
T KOG3859|consen 44 NILCVGETGLGKSTLMDTLFNTKF---ESEPSTHTLPNVKLQANT----------------YELQ--------------- 89 (406)
T ss_pred EEEEeccCCccHHHHHHHHhcccc---CCCCCccCCCCceeecch----------------hhhh---------------
Confidence 589999999999999999998876 223333221111111100 0000
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCC-CCCchHHHHHHHHHHHHHhc---------------CCccEEEee
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV-GEQPADIEARIRTMIMSYIK---------------QPSCLILAV 192 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~-~~q~~di~~~i~~lv~~yi~---------------~~~~iIL~V 192 (827)
..-++ ..||+|||-|+.+--. .+.-..|.+.+......|++ +-+..+.++
T Consensus 90 ------Esnvr--------lKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI 155 (406)
T KOG3859|consen 90 ------ESNVR--------LKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFI 155 (406)
T ss_pred ------hcCee--------EEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEe
Confidence 01112 3589999999964322 22222344444444444443 224456677
Q ss_pred cCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 193 TPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 193 ~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
.|....+-.-| +-..+.+|. ..++|-||-|.|.+...
T Consensus 156 ~PTGH~LKslD-Lvtmk~Lds-kVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 156 SPTGHSLKSLD-LVTMKKLDS-KVNIIPVIAKADTISKE 192 (406)
T ss_pred cCCCcchhHHH-HHHHHHHhh-hhhhHHHHHHhhhhhHH
Confidence 78777776656 444566764 47899999999998754
No 337
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.014 Score=63.14 Aligned_cols=68 Identities=28% Similarity=0.356 Sum_probs=45.7
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcC--CccEEEeecCCCCcccchHHH--HHHHHhCCCCCceEEeee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQ--PSCLILAVTPANSDLANSDAL--QIAGIADPDGYRTIGIIT 223 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~--~~~iIL~V~~a~~d~~~~d~l--~la~~~dp~g~rtIgVlT 223 (827)
..++|||-||-.+ .|+.+ |.. --++.++|+++..+..++.|. -+...+. .+.|+|+|
T Consensus 70 lq~tlvDCPGHas------------LIRti----iggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c---~klvvvin 130 (522)
T KOG0461|consen 70 LQFTLVDCPGHAS------------LIRTI----IGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC---KKLVVVIN 130 (522)
T ss_pred ceeEEEeCCCcHH------------HHHHH----HhhhheeeeeeEEEehhcccccccchhhhhhhhhc---cceEEEEe
Confidence 4679999999542 33333 332 224677888888888777663 3344443 67899999
Q ss_pred cCCCCCCcccH
Q 003355 224 KLDIMDRGTDA 234 (827)
Q Consensus 224 K~D~~~~~~~~ 234 (827)
|+|...++..+
T Consensus 131 kid~lpE~qr~ 141 (522)
T KOG0461|consen 131 KIDVLPENQRA 141 (522)
T ss_pred ccccccchhhh
Confidence 99999876543
No 338
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.91 E-value=0.0026 Score=71.24 Aligned_cols=69 Identities=25% Similarity=0.341 Sum_probs=42.7
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..+.+|||||-.+- ++ ++ +.+-.| -+.++| +++|....--|. ....++.-..|-+-|+|+||+|.
T Consensus 68 ~~INIvDTPGHADF--GG---EV-ERvl~M-------VDgvlL-lVDA~EGpMPQT-rFVlkKAl~~gL~PIVVvNKiDr 132 (603)
T COG1217 68 TRINIVDTPGHADF--GG---EV-ERVLSM-------VDGVLL-LVDASEGPMPQT-RFVLKKALALGLKPIVVINKIDR 132 (603)
T ss_pred eEEEEecCCCcCCc--cc---hh-hhhhhh-------cceEEE-EEEcccCCCCch-hhhHHHHHHcCCCcEEEEeCCCC
Confidence 46899999997543 22 12 233333 244444 456655544444 34455555678999999999999
Q ss_pred CCCc
Q 003355 228 MDRG 231 (827)
Q Consensus 228 ~~~~ 231 (827)
-+..
T Consensus 133 p~Ar 136 (603)
T COG1217 133 PDAR 136 (603)
T ss_pred CCCC
Confidence 8644
No 339
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.90 E-value=0.0018 Score=68.51 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=22.1
Q ss_pred EEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccC
Q 003355 52 VVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK 93 (827)
Q Consensus 52 VvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~ 93 (827)
|+|..||||||+..++... ++.. -|.+..+.|-...
T Consensus 1 ViGpaGSGKTT~~~~~~~~--~~~~----~~~~~~vNLDPa~ 36 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW--LESN----GRDVYIVNLDPAV 36 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH--HTTT-----S-EEEEE--TT-
T ss_pred CCCCCCCCHHHHHHHHHHH--HHhc----cCCceEEEcchHh
Confidence 7999999999999999753 2221 2556666665443
No 340
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.85 E-value=0.0085 Score=67.13 Aligned_cols=174 Identities=23% Similarity=0.283 Sum_probs=98.4
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEee--ccC---CCcccceeecCCCccccChHHHHHHHHH
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLL--QTK---TDEEYGEFLHLPGKRFYDFSEIRREIQA 121 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~--~~~---~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 121 (827)
---|++||+.|+||+|.|=-|..+-++-.+.. +.. .|.+- +-. .-..|+..+..|=+..++..++..++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~---kVa-iITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKK---KVA-IITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCc---ceE-EEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 34589999999999999998887632101100 000 01100 000 0124555555555556677777777665
Q ss_pred hhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCC-ccEEEeecCCCCccc
Q 003355 122 QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQP-SCLILAVTPANSDLA 200 (827)
Q Consensus 122 ~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~-~~iIL~V~~a~~d~~ 200 (827)
..+ .+++||||-|-.... ...+.+ ...|+... +.-..+|++|+.-
T Consensus 279 l~~-----------------------~d~ILVDTaGrs~~D--------~~~i~e-l~~~~~~~~~i~~~Lvlsat~K-- 324 (407)
T COG1419 279 LRD-----------------------CDVILVDTAGRSQYD--------KEKIEE-LKELIDVSHSIEVYLVLSATTK-- 324 (407)
T ss_pred hhc-----------------------CCEEEEeCCCCCccC--------HHHHHH-HHHHHhccccceEEEEEecCcc--
Confidence 543 279999999975432 112323 34556533 3345566676643
Q ss_pred chHHHHHHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCchhhh
Q 003355 201 NSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 201 ~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
..|...+...+...+-.. +++||+|....--+..+++.. ..+.+.|+..-.+-++||.
T Consensus 325 ~~dlkei~~~f~~~~i~~-~I~TKlDET~s~G~~~s~~~e--~~~PV~YvT~GQ~VPeDI~ 382 (407)
T COG1419 325 YEDLKEIIKQFSLFPIDG-LIFTKLDETTSLGNLFSLMYE--TRLPVSYVTNGQRVPEDIV 382 (407)
T ss_pred hHHHHHHHHHhccCCcce-eEEEcccccCchhHHHHHHHH--hCCCeEEEeCCCCCCchhh
Confidence 234446677776654444 468999998653333333322 2345677776667777764
No 341
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0064 Score=71.31 Aligned_cols=135 Identities=17% Similarity=0.250 Sum_probs=84.1
Q ss_pred CCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHh
Q 003355 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (827)
Q Consensus 43 ~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (827)
..+.-|-++|+|..-+||+-||..|-|.++---..|..|. .-|-.|+..+.|++.....
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitq---------------------qIgAt~fp~~ni~e~tk~~ 529 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQ---------------------QIGATYFPAENIREKTKEL 529 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccccceee---------------------eccccccchHHHHHHHHHH
Confidence 3678899999999999999999999988653222232221 1144455555555443322
Q ss_pred hhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch
Q 003355 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (827)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (827)
+... + .++ .+|.+.+|||||.- .+.++-.....-++ +++.|++.-.++..+
T Consensus 530 ~~~~----K------~~~-----kvPg~lvIdtpghE-------------sFtnlRsrgsslC~-~aIlvvdImhGlepq 580 (1064)
T KOG1144|consen 530 KKDA----K------KRL-----KVPGLLVIDTPGHE-------------SFTNLRSRGSSLCD-LAILVVDIMHGLEPQ 580 (1064)
T ss_pred Hhhh----h------hhc-----CCCeeEEecCCCch-------------hhhhhhhccccccc-eEEEEeehhccCCcc
Confidence 2110 0 011 24679999999942 33333333333444 777777888887766
Q ss_pred HHHHHHHHhCCCCCceEEeeecCCCC
Q 003355 203 DALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 203 d~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
.. .-+..+.....+.|+.|||+|.+
T Consensus 581 ti-ESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 581 TI-ESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred hh-HHHHHHHhcCCCeEEeehhhhhh
Confidence 53 33344444568999999999987
No 342
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.78 E-value=0.0014 Score=74.24 Aligned_cols=27 Identities=44% Similarity=0.626 Sum_probs=24.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+.-+|.+||-+|+||||+||+|+|.+.
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~Kk 339 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKK 339 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCce
Confidence 356799999999999999999999975
No 343
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.76 E-value=0.0028 Score=68.63 Aligned_cols=105 Identities=23% Similarity=0.337 Sum_probs=63.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.-+.|.+||-+|+||||++|+|+....-|...-.||--|-+-+. ..+..+| +-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V-------------~v~d~Rf---d~----------- 71 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARV-------------EVPDSRF---DL----------- 71 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceecccccee-------------ecCchHH---HH-----------
Confidence 45679999999999999999999887545455567766633221 1122111 00
Q ss_pred hcCCCCcccccceEEEEecCC---cccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCC
Q 003355 126 EAGGNKGVSDKQIRLKIFSPH---VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS 197 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~---~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~ 197 (827)
..++++|. ...|+++|..|+++.+..++ -.-+--.+.|+..+ .|+-|+.|..
T Consensus 72 -------------l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~------GLGN~FLs~iR~vD-aifhVVr~f~ 126 (391)
T KOG1491|consen 72 -------------LCPIYGPKSKVPAFLTVYDIAGLVKGASAGE------GLGNKFLSHIRHVD-AIFHVVRAFE 126 (391)
T ss_pred -------------HHHhcCCcceeeeeEEEEeecccccCcccCc------CchHHHHHhhhhcc-ceeEEEEecC
Confidence 01111111 12589999999998865543 33344456677776 5566665543
No 344
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.76 E-value=0.011 Score=67.73 Aligned_cols=93 Identities=24% Similarity=0.269 Sum_probs=53.5
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.++.||||||..... ...-..+..+. ..+ .++. +++|+++.. .+++...++.+...-.-+=+|+||+|.
T Consensus 183 ~DvVIIDTaGr~~~d-----~~l~~eL~~i~-~~~-~p~e-~lLVvda~t---gq~~~~~a~~f~~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQID-----EELMEELAAIK-EIL-NPDE-ILLVVDAMT---GQDAVNTAKTFNERLGLTGVVLTKLDG 251 (428)
T ss_pred CCEEEEeCCCccccC-----HHHHHHHHHHH-Hhh-CCce-EEEEEeccc---hHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 479999999975431 22223333332 222 4553 466666653 467778888776544557788999997
Q ss_pred CCCcccHHHhhccccccccceEEEEE
Q 003355 228 MDRGTDARNLLLGKVIPLRLGYVGVV 253 (827)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~ 253 (827)
...+-.+..+..... +..-|+++-
T Consensus 252 ~~~~G~~lsi~~~~~--~PI~fi~~G 275 (428)
T TIGR00959 252 DARGGAALSVRSVTG--KPIKFIGVG 275 (428)
T ss_pred cccccHHHHHHHHHC--cCEEEEeCC
Confidence 765544444432222 334455543
No 345
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.74 E-value=0.006 Score=76.52 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=44.7
Q ss_pred cccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCC
Q 003355 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (827)
Q Consensus 147 ~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D 226 (827)
.|.++||||||.. .+..+...+....+ ++++|+++..++..+. ...+..+...+.++|+|+||+|
T Consensus 525 ~p~i~fiDTPGhe-------------~F~~lr~~g~~~aD-ivlLVVDa~~Gi~~qT-~e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPGHE-------------AFTSLRKRGGSLAD-LAVLVVDINEGFKPQT-IEAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCCcH-------------HHHHHHHhhcccCC-EEEEEEECcccCCHhH-HHHHHHHHHcCCCEEEEEECCC
Confidence 3579999999932 23344444555565 6666777776655543 3333444445689999999999
Q ss_pred CCC
Q 003355 227 IMD 229 (827)
Q Consensus 227 ~~~ 229 (827)
+..
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 974
No 346
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.69 E-value=0.016 Score=59.93 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=23.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|.|+|+|..|||||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999865
No 347
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.68 E-value=0.0068 Score=64.10 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=20.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.-..|.|.|.+++|||||+++|.-.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999743
No 348
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.67 E-value=0.17 Score=62.31 Aligned_cols=24 Identities=50% Similarity=0.692 Sum_probs=20.6
Q ss_pred EccCCCCHHHHHHHHhCCCCCccCC
Q 003355 53 VGSQSSGKSSVLEALVGRDFLPRGN 77 (827)
Q Consensus 53 vG~qssGKSSlLnaL~G~~~lP~~~ 77 (827)
+|.||+|||||||.|.|..| ++-.
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~m~ 24 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DVMD 24 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-cccc
Confidence 59999999999999999986 5533
No 349
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.63 E-value=0.012 Score=75.91 Aligned_cols=31 Identities=35% Similarity=0.634 Sum_probs=27.0
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCCCCccC
Q 003355 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (827)
Q Consensus 44 ~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~ 76 (827)
-.+||=.+|||.++|||||+|+.- |.+| |-.
T Consensus 108 lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~ 138 (1169)
T TIGR03348 108 LYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLA 138 (1169)
T ss_pred hhcCCCEEEECCCCCchhHHHHhC-CCCC-cCc
Confidence 469999999999999999999997 8874 554
No 350
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.0072 Score=70.13 Aligned_cols=133 Identities=17% Similarity=0.250 Sum_probs=75.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..-.|+|+|.-.+|||+|+..|++... |.... +.+..|+.++. +..++
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~~-----~~e~~lrytD~--------------------l~~E~------ 174 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTH-PDFSK-----NTEADLRYTDT--------------------LFYEQ------ 174 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceecc-ccccc-----ccccccccccc--------------------chhhH------
Confidence 344689999999999999999998864 44322 22222222211 00000
Q ss_pred hcCCCCcccccceEEEEecCCc--ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCccc-ch
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHV--LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA-NS 202 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~--~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~-~~ 202 (827)
..+-++-..+.+|-+..-.. .-++++||||-..- ..+++ .-++..+ .+++|+++-.+.. +.
T Consensus 175 --eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF------------~DE~t-a~l~~sD-gvVlvvDv~EGVmlnt 238 (971)
T KOG0468|consen 175 --ERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNF------------SDETT-ASLRLSD-GVVLVVDVAEGVMLNT 238 (971)
T ss_pred --hcCceEeecceEEEEecCcCceeeeeeecCCCcccc------------hHHHH-HHhhhcc-eEEEEEEcccCceeeH
Confidence 01122333444444443322 34799999997532 12222 2344455 4444555554443 33
Q ss_pred HHHHHHHHhCCCCCceEEeeecCCCC
Q 003355 203 DALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 203 d~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
+ ++++..-....++.+|+||+|.+
T Consensus 239 E--r~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 239 E--RIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred H--HHHHHHHhccCcEEEEEehhHHH
Confidence 3 56666666779999999999985
No 351
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.57 E-value=0.13 Score=55.42 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.4
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G 69 (827)
.-+.|.+.|.+++|||||+++|.-
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHH
Confidence 566899999999999999999863
No 352
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.011 Score=67.20 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=33.7
Q ss_pred cEEEeecCCCCcccchHHHHHHHHhCCCC-CceEEeeecCCCCCCcc
Q 003355 187 CLILAVTPANSDLANSDALQIAGIADPDG-YRTIGIITKLDIMDRGT 232 (827)
Q Consensus 187 ~iIL~V~~a~~d~~~~d~l~la~~~dp~g-~rtIgVlTK~D~~~~~~ 232 (827)
+++|+.+++|-++.-.. ..++.-+.+.| .|++||+|..|+.....
T Consensus 135 DLVlLlIdgnfGfEMET-mEFLnil~~HGmPrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 135 DLVLLLIDGNFGFEMET-MEFLNILISHGMPRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred heeEEEeccccCceehH-HHHHHHHhhcCCCceEEEEeecccccChH
Confidence 58888899998877654 45555555555 67899999999997543
No 353
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.50 E-value=0.012 Score=66.30 Aligned_cols=132 Identities=16% Similarity=0.260 Sum_probs=75.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
-...+|-.--.|||||-..|+... |..+.+ +.+..+-+.++.+-
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t------~~~~~R------------------------------em~~Q~LDsMdiER 53 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELT------GGLSER------------------------------EMRAQVLDSMDIER 53 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHh------cCcChH------------------------------HHHHHhhhhhhhHh
Confidence 346788888999999999998652 111100 11112222222222
Q ss_pred CCCCcccccceEEEEecC--CcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 128 GGNKGVSDKQIRLKIFSP--HVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p--~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
..+..+-...+++..... ....|.||||||..+-.- + +.+.+..+.. .|+|++|.+++..|..-
T Consensus 54 ERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsY-----E--------VSRSLAACEG-alLvVDAsQGveAQTlA 119 (603)
T COG0481 54 ERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSY-----E--------VSRSLAACEG-ALLVVDASQGVEAQTLA 119 (603)
T ss_pred hcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEE-----E--------ehhhHhhCCC-cEEEEECccchHHHHHH
Confidence 223334455666666554 345689999999754321 0 1122333333 34556888888776643
Q ss_pred HHHHHhCCCCCceEEeeecCCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
..-..++ .+.-+|-|+||+|+-..
T Consensus 120 N~YlAle-~~LeIiPViNKIDLP~A 143 (603)
T COG0481 120 NVYLALE-NNLEIIPVLNKIDLPAA 143 (603)
T ss_pred HHHHHHH-cCcEEEEeeecccCCCC
Confidence 3333344 34789999999999753
No 354
>PTZ00099 rab6; Provisional
Probab=96.47 E-value=0.016 Score=58.47 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=41.8
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc--ccch-HHHHHHHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD--LANS-DALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d--~~~~-d~l~la~~~dp~g~rtIgVlTK 224 (827)
..+.|+||||.. ..+.+...|++..+ ++|+|.+++.. +... ..+..+........++|+|.||
T Consensus 29 v~l~iwDt~G~e-------------~~~~~~~~~~~~ad-~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 29 VRLQLWDTAGQE-------------RFRSLIPSYIRDSA-AAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEECCChH-------------HhhhccHHHhCCCc-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 578999999943 44456677888887 55555555442 2221 1222222222234678999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
+|+.+
T Consensus 95 ~DL~~ 99 (176)
T PTZ00099 95 TDLGD 99 (176)
T ss_pred ccccc
Confidence 99974
No 355
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.43 E-value=0.029 Score=63.20 Aligned_cols=77 Identities=26% Similarity=0.263 Sum_probs=51.8
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.++.||||.|-.... +++-+.++++ +-+-+|+ =+|+|++|. ..|+|...|+.++..-.=|=+|+||+|-
T Consensus 183 ~DvvIvDTAGRl~id-----e~Lm~El~~I--k~~~~P~-E~llVvDam---~GQdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 183 YDVVIVDTAGRLHID-----EELMDELKEI--KEVINPD-ETLLVVDAM---IGQDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred CCEEEEeCCCccccc-----HHHHHHHHHH--HhhcCCC-eEEEEEecc---cchHHHHHHHHHhhhcCCceEEEEcccC
Confidence 479999999965432 3333333332 2333565 455556554 4588889999999887778889999999
Q ss_pred CCCcccHH
Q 003355 228 MDRGTDAR 235 (827)
Q Consensus 228 ~~~~~~~~ 235 (827)
-.+|--+.
T Consensus 252 daRGGaAL 259 (451)
T COG0541 252 DARGGAAL 259 (451)
T ss_pred CCcchHHH
Confidence 87765443
No 356
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.017 Score=61.54 Aligned_cols=130 Identities=17% Similarity=0.301 Sum_probs=82.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
-.|..||....||+||--||++. +.-.+ +....+++++...-+
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~-la~~~-----------------------------~~~~~~y~~id~aPe------- 55 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTV-LAKKG-----------------------------GAEAKAYDQIDNAPE------- 55 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHH-HHhhc-----------------------------cccccchhhhccCch-------
Confidence 36899999999999999999875 11111 111223333321111
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCccc-chHHHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA-NSDALQ 206 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~-~~d~l~ 206 (827)
....|++-+.-+++....+ -....||-||-. .-+++|+....+ .+..||+|..+..... +.+-.-
T Consensus 56 Ek~rGITIntahveyet~~-rhyahVDcPGHa------------DYvKNMItgAaq-mDgAILVVsA~dGpmPqTrEHiL 121 (394)
T COG0050 56 EKARGITINTAHVEYETAN-RHYAHVDCPGHA------------DYVKNMITGAAQ-MDGAILVVAATDGPMPQTREHIL 121 (394)
T ss_pred HhhcCceeccceeEEecCC-ceEEeccCCChH------------HHHHHHhhhHHh-cCccEEEEEcCCCCCCcchhhhh
Confidence 1124566666667766544 368899999954 367788877666 3457777766655443 334456
Q ss_pred HHHHhCCCCCceEEeeecCCCCCC
Q 003355 207 IAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 207 la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+++++. -.+++.++||+|+++.
T Consensus 122 larqvG--vp~ivvflnK~Dmvdd 143 (394)
T COG0050 122 LARQVG--VPYIVVFLNKVDMVDD 143 (394)
T ss_pred hhhhcC--CcEEEEEEecccccCc
Confidence 777774 2477888899999984
No 357
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.018 Score=54.52 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=71.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
-.-+++|+.++|||-||..++..+|+ ..||-.+-+ +++.
T Consensus 12 fkyiiigdmgvgkscllhqftekkfm-------adcphtigv-------efgt--------------------------- 50 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFM-------ADCPHTIGV-------EFGT--------------------------- 50 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHh-------hcCCcccce-------ecce---------------------------
Confidence 35689999999999999999998874 235522211 1110
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcc---cchHH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---ANSDA 204 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---~~~d~ 204 (827)
-.+++.+. ...|.++||.| .+.++.++++|.+.+.. .|+|-+....- .-+.+
T Consensus 51 ----------riievsgq-kiklqiwdtag-------------qerfravtrsyyrgaag-almvyditrrstynhlssw 105 (215)
T KOG0097|consen 51 ----------RIIEVSGQ-KIKLQIWDTAG-------------QERFRAVTRSYYRGAAG-ALMVYDITRRSTYNHLSSW 105 (215)
T ss_pred ----------eEEEecCc-EEEEEEeeccc-------------HHHHHHHHHHHhccccc-eeEEEEehhhhhhhhHHHH
Confidence 11222222 23688999999 46889999999997753 34443332111 11233
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+.-++.+..-..-++.+-||.|+-+.
T Consensus 106 l~dar~ltnpnt~i~lignkadle~q 131 (215)
T KOG0097|consen 106 LTDARNLTNPNTVIFLIGNKADLESQ 131 (215)
T ss_pred HhhhhccCCCceEEEEecchhhhhhc
Confidence 44455554434455667799999764
No 358
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.36 E-value=0.011 Score=63.77 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=22.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.-+.+.|||-+|+|||||||++--.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~ 166 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNV 166 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHH
Confidence 5688999999999999999998654
No 359
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.0045 Score=61.78 Aligned_cols=114 Identities=17% Similarity=0.254 Sum_probs=72.4
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.--+|+++|=-+|||||+|..|--.+++ |-.|+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~v-------ttvPT---------------------------------------- 48 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-------TTVPT---------------------------------------- 48 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcc-------cCCCc----------------------------------------
Confidence 4457999999999999999988654432 11331
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
.||..+.+.++ ...++++|.-|- ..++.+-..|..+.+ .|++|+|.++...-.++.
T Consensus 49 -----iGfnVE~v~yk-----n~~f~vWDvGGq-------------~k~R~lW~~Y~~~t~-~lIfVvDS~Dr~Ri~eak 104 (181)
T KOG0070|consen 49 -----IGFNVETVEYK-----NISFTVWDVGGQ-------------EKLRPLWKHYFQNTQ-GLIFVVDSSDRERIEEAK 104 (181)
T ss_pred -----cccceeEEEEc-----ceEEEEEecCCC-------------cccccchhhhccCCc-EEEEEEeCCcHHHHHHHH
Confidence 12222222222 236899998883 255667778999887 556666666554444442
Q ss_pred -HHHH---HhCCCCCceEEeeecCCCCCC
Q 003355 206 -QIAG---IADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 -~la~---~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+.+ .-+..+.++++..||-|+...
T Consensus 105 ~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 105 EELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred HHHHHHHcCcccCCceEEEEechhhcccc
Confidence 2333 333347888999999998753
No 360
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=96.14 E-value=0.06 Score=52.11 Aligned_cols=70 Identities=13% Similarity=0.223 Sum_probs=44.9
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH-HHHHhCCC----CCceEEeee
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ-IAGIADPD----GYRTIGIIT 223 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~-la~~~dp~----g~rtIgVlT 223 (827)
.|.|.||.|+...+ .++-+.|.+-+++.+|+-.+++ ...-+.+. +-+++|.. ..++++..|
T Consensus 61 ~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d--~eSf~rv~llKk~Idk~KdKKEvpiVVLaN 126 (198)
T KOG3883|consen 61 QLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMD--PESFQRVELLKKEIDKHKDKKEVPIVVLAN 126 (198)
T ss_pred eEEEeecccccCch------------hhhhHhHhccCceEEEEecCCC--HHHHHHHHHHHHHHhhccccccccEEEEec
Confidence 58999999986431 2455679998887777766544 22222233 34456543 346667779
Q ss_pred cCCCCCCcc
Q 003355 224 KLDIMDRGT 232 (827)
Q Consensus 224 K~D~~~~~~ 232 (827)
|.|+..+.+
T Consensus 127 ~rdr~~p~~ 135 (198)
T KOG3883|consen 127 KRDRAEPRE 135 (198)
T ss_pred hhhcccchh
Confidence 999986543
No 361
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.05 E-value=0.068 Score=58.02 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-....|.|+|.+||||||||+.|++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999886
No 362
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.04 E-value=0.0059 Score=67.48 Aligned_cols=47 Identities=26% Similarity=0.399 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCCCC-CCCEEEEEccCCCCHHHHHHHHhCCCCCccCC
Q 003355 31 KLQDIFAQLGSQSTI-ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (827)
Q Consensus 31 ~l~d~~~~~g~~~~~-~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~ 77 (827)
-|.++|...+....+ .--++.|||-+|+|||||||+|..+..-++|.
T Consensus 235 ~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~ 282 (435)
T KOG2484|consen 235 TLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN 282 (435)
T ss_pred HHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCC
Confidence 345554433332222 23478999999999999999999887644443
No 363
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=95.81 E-value=0.019 Score=63.21 Aligned_cols=133 Identities=18% Similarity=0.218 Sum_probs=81.6
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
+..|.|+..-.+||+|+-|.|+-..-.-+..| . -..|...+||-.+.++
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g---------------------~--vddgdtvtdfla~ere-------- 85 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAG---------------------D--VDDGDTVTDFLAIERE-------- 85 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhccc---------------------c--cCCCchHHHHHHHHHh--------
Confidence 34578888999999999999874321001111 0 0225556666554433
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
.|++-...-+...+. ...+.||||||-.+-.. . +.+.++-- +-+++|.+++.+...+. +.
T Consensus 86 ----rgitiqsaav~fdwk-g~rinlidtpghvdf~l---------e----verclrvl-dgavav~dasagve~qt-lt 145 (753)
T KOG0464|consen 86 ----RGITIQSAAVNFDWK-GHRINLIDTPGHVDFRL---------E----VERCLRVL-DGAVAVFDASAGVEAQT-LT 145 (753)
T ss_pred ----cCceeeeeeeecccc-cceEeeecCCCcceEEE---------E----HHHHHHHh-cCeEEEEeccCCcccce-ee
Confidence 222222222233332 24689999999754321 1 12233322 25778888888877766 78
Q ss_pred HHHHhCCCCCceEEeeecCCCCCC
Q 003355 207 IAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 207 la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+.++.|....+.++.+||+|....
T Consensus 146 vwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 146 VWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred eehhccccCCchhhhhhhhhhhhh
Confidence 888999989999999999999853
No 364
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.78 E-value=0.012 Score=64.24 Aligned_cols=68 Identities=25% Similarity=0.423 Sum_probs=42.6
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc--ccchHHHHHHHHhCCCCCceEEeeecCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD--LANSDALQIAGIADPDGYRTIGIITKLD 226 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d--~~~~d~l~la~~~dp~g~rtIgVlTK~D 226 (827)
-+||+||.|-.+-- .. .+.. ...|. |++..|+| +|+.. +++.+-+-++..++ .|.++++||+|
T Consensus 250 lvTfiDLAGh~kY~----~T----Ti~g-LtgY~--Ph~A~LvV-sA~~Gi~~tTrEHLgl~~AL~---iPfFvlvtK~D 314 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQ----KT----TIHG-LTGYT--PHFACLVV-SADRGITWTTREHLGLIAALN---IPFFVLVTKMD 314 (591)
T ss_pred eEEEeecccchhhh----ee----eeee-cccCC--CceEEEEE-EcCCCCccccHHHHHHHHHhC---CCeEEEEEeec
Confidence 37999999954210 00 1111 12343 45445544 45544 56666677887776 89999999999
Q ss_pred CCCCc
Q 003355 227 IMDRG 231 (827)
Q Consensus 227 ~~~~~ 231 (827)
+.++.
T Consensus 315 l~~~~ 319 (591)
T KOG1143|consen 315 LVDRQ 319 (591)
T ss_pred cccch
Confidence 99873
No 365
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=95.73 E-value=0.055 Score=62.64 Aligned_cols=87 Identities=21% Similarity=0.187 Sum_probs=48.3
Q ss_pred CcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCccc---------c
Q 003355 131 KGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA---------N 201 (827)
Q Consensus 131 ~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~---------~ 201 (827)
.||+-++-+..++ +....+||+|.||.- ..+-+|+.... +++..||+ ++|+.+.- +
T Consensus 239 rGvTm~v~~~~fe-s~~~~~tliDaPGhk------------dFi~nmi~g~s-qaD~avLv-vd~s~~~FE~gfd~~gQt 303 (603)
T KOG0458|consen 239 RGVTMDVKTTWFE-SKSKIVTLIDAPGHK------------DFIPNMISGAS-QADVAVLV-VDASTGEFESGFDPGGQT 303 (603)
T ss_pred cceeEEeeeEEEe-cCceeEEEecCCCcc------------ccchhhhcccc-ccceEEEE-EECCcchhhhccCCCCch
Confidence 3444444333433 556789999999942 13444543333 44545555 45554321 1
Q ss_pred hHHHHHHHHhCCCCCceEEeeecCCCCCCcccH
Q 003355 202 SDALQIAGIADPDGYRTIGIITKLDIMDRGTDA 234 (827)
Q Consensus 202 ~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~ 234 (827)
.+-..+++.+. -...|+++||+|+++=..+.
T Consensus 304 rEha~llr~Lg--i~qlivaiNKmD~V~Wsq~R 334 (603)
T KOG0458|consen 304 REHALLLRSLG--ISQLIVAINKMDLVSWSQDR 334 (603)
T ss_pred HHHHHHHHHcC--cceEEEEeecccccCccHHH
Confidence 12233444443 36789999999999744443
No 366
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=95.58 E-value=0.01 Score=62.02 Aligned_cols=29 Identities=34% Similarity=0.399 Sum_probs=23.3
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~ 77 (827)
-++.+||-+|+||||++.-|+|.. -|+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vas 88 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAA 88 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-Ccccc
Confidence 367789999999999999999984 34433
No 367
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.56 E-value=0.58 Score=52.89 Aligned_cols=167 Identities=17% Similarity=0.207 Sum_probs=89.2
Q ss_pred HHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceee-cCCCcc
Q 003355 30 NKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFL-HLPGKR 108 (827)
Q Consensus 30 ~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~-~~~g~~ 108 (827)
|-.+|+..+.|-.-+ |.|||+--+||||+|..++..=++|.-.+.--|-= ...+.. ...|+.
T Consensus 5 ~iykDIa~RT~GdIY-----iGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reR------------a~DELPQS~aGkt 67 (492)
T PF09547_consen 5 DIYKDIAERTGGDIY-----IGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERER------------ARDELPQSGAGKT 67 (492)
T ss_pred hHHHHHHHhcCCceE-----EEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHH------------hhhcCCcCCCCCc
Confidence 556788788885444 89999999999999999998877775433111100 000000 001111
Q ss_pred ccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCC-cCCCCCCc---------------hHHHH
Q 003355 109 FYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGIT-KVPVGEQP---------------ADIEA 172 (827)
Q Consensus 109 ~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~-~~~~~~q~---------------~di~~ 172 (827)
+ .+-..+-+-.+.+.+.+......++.|||--|+. ..+.|... --..+
T Consensus 68 I----------------mTTEPKFiP~eAv~I~l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~e 131 (492)
T PF09547_consen 68 I----------------MTTEPKFIPNEAVEITLDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEE 131 (492)
T ss_pred e----------------eccCCcccCCcceEEEecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHH
Confidence 1 0111223344566777766666789999999984 33322210 01112
Q ss_pred HHHHHHHHHhcCCccEEEeecCC-C-CcccchHH----HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 173 RIRTMIMSYIKQPSCLILAVTPA-N-SDLANSDA----LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a-~-~d~~~~d~----l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..+-=+++-|.+-.+|=++|+.. + .|+...+. .+...++...|+|.|+|+|-.+--.
T Consensus 132 AAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s 194 (492)
T PF09547_consen 132 AAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYS 194 (492)
T ss_pred HHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCC
Confidence 22222445555545555555432 2 23333221 2455666666777777777555443
No 368
>PRK01889 GTPase RsgA; Reviewed
Probab=95.53 E-value=0.024 Score=63.67 Aligned_cols=24 Identities=42% Similarity=0.738 Sum_probs=22.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
-.++++|..++|||||+|+|+|..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 379999999999999999999975
No 369
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=0.11 Score=56.15 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=28.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeecc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQT 92 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~ 92 (827)
.|..||.--.|||||..||+|.-. -+- .--.++-+.++|.+.
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT-~~h-seElkRgitIkLGYA 53 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWT-DRH-SEELKRGITIKLGYA 53 (415)
T ss_pred Eeeeeeecccchhhheehhhceee-ech-hHHHhcCcEEEeccc
Confidence 488999999999999999999842 111 112344555665544
No 370
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=95.49 E-value=0.058 Score=52.81 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 174 IRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 174 i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
++++++.++++.+ ++++|+++.......+ ..+.+.+...+.+.|+|+||+|+.+
T Consensus 2 ~~~~~~~i~~~aD-~vl~V~D~~~~~~~~~-~~l~~~~~~~~~p~iiv~NK~Dl~~ 55 (156)
T cd01859 2 WKRLVRRIIKESD-VVLEVLDARDPELTRS-RKLERYVLELGKKLLIVLNKADLVP 55 (156)
T ss_pred HHHHHHHHHhhCC-EEEEEeeCCCCcccCC-HHHHHHHHhCCCcEEEEEEhHHhCC
Confidence 5677777777776 7777888865444333 2444444445789999999999974
No 371
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.018 Score=55.89 Aligned_cols=64 Identities=17% Similarity=0.324 Sum_probs=41.9
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH-HHHHHHhC-------CCCCceEE
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-LQIAGIAD-------PDGYRTIG 220 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~-l~la~~~d-------p~g~rtIg 220 (827)
.|.|+||.| ++.++.++..|.+.+-..+|... +++... +....++. -+..-+|+
T Consensus 68 hLQlWDTAG-------------QERFRSLTTAFfRDAMGFlLiFD-----lT~eqSFLnvrnWlSQL~~hAYcE~PDivl 129 (219)
T KOG0081|consen 68 HLQLWDTAG-------------QERFRSLTTAFFRDAMGFLLIFD-----LTSEQSFLNVRNWLSQLQTHAYCENPDIVL 129 (219)
T ss_pred EEeeecccc-------------HHHHHHHHHHHHHhhccceEEEe-----ccchHHHHHHHHHHHHHHHhhccCCCCEEE
Confidence 588999999 56899999999998876666542 222221 22222221 12345778
Q ss_pred eeecCCCCCC
Q 003355 221 IITKLDIMDR 230 (827)
Q Consensus 221 VlTK~D~~~~ 230 (827)
.-||.|+.+.
T Consensus 130 cGNK~DL~~~ 139 (219)
T KOG0081|consen 130 CGNKADLEDQ 139 (219)
T ss_pred EcCccchhhh
Confidence 8899999874
No 372
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=0.037 Score=61.10 Aligned_cols=74 Identities=32% Similarity=0.291 Sum_probs=47.5
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHH--HHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTM--IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~l--v~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~ 225 (827)
.+++||||-|-.. |... .+++| |.+.+. |+ -|++|++|+..-+ +...++.+...-.-+-++|||+
T Consensus 184 fdvIIvDTSGRh~-----qe~s---LfeEM~~v~~ai~-Pd-~vi~VmDasiGQa---ae~Qa~aFk~~vdvg~vIlTKl 250 (483)
T KOG0780|consen 184 FDVIIVDTSGRHK-----QEAS---LFEEMKQVSKAIK-PD-EIIFVMDASIGQA---AEAQARAFKETVDVGAVILTKL 250 (483)
T ss_pred CcEEEEeCCCchh-----hhHH---HHHHHHHHHhhcC-CC-eEEEEEeccccHh---HHHHHHHHHHhhccceEEEEec
Confidence 4799999999543 2222 34444 345555 44 6788888886543 3455555555545567889999
Q ss_pred CCCCCcccH
Q 003355 226 DIMDRGTDA 234 (827)
Q Consensus 226 D~~~~~~~~ 234 (827)
|-..+|--+
T Consensus 251 DGhakGGgA 259 (483)
T KOG0780|consen 251 DGHAKGGGA 259 (483)
T ss_pred ccCCCCCce
Confidence 998876543
No 373
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=95.23 E-value=0.1 Score=57.10 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=83.3
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
-.+-+++-+|.---||||||-.|+--.- ...+=++..-.+... -+..+-...||.-+.+-++++.+
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk----------~i~eDQla~l~~dS~----~~~t~g~~~D~ALLvDGL~AERE 69 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTK----------AIYEDQLASLERDSK----RKGTQGEKIDLALLVDGLEAERE 69 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcch----------hhhHHHHHHHhcccc----cccCCCCccchhhhhhhhHHHHh
Confidence 3577899999999999999988874321 111101100000000 00001123566666666655543
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
.|++-++ ..+.++-..-...+.||||- ++..++|+...-. ++ +.+++++|...+-.|.-
T Consensus 70 ------QGITIDV-AYRyFsT~KRkFIiADTPGH------------eQYTRNMaTGAST-ad-lAIlLVDAR~Gvl~QTr 128 (431)
T COG2895 70 ------QGITIDV-AYRYFSTEKRKFIIADTPGH------------EQYTRNMATGAST-AD-LAILLVDARKGVLEQTR 128 (431)
T ss_pred ------cCceEEE-EeeecccccceEEEecCCcH------------HHHhhhhhccccc-cc-EEEEEEecchhhHHHhH
Confidence 3444333 22334445568999999993 2356666544433 23 44445678777665543
Q ss_pred H-HHHHHhCCCC-CceEEeeecCCCCCCccc
Q 003355 205 L-QIAGIADPDG-YRTIGIITKLDIMDRGTD 233 (827)
Q Consensus 205 l-~la~~~dp~g-~rtIgVlTK~D~~~~~~~ 233 (827)
. .+...+ .| +..++.+||+|+++-.++
T Consensus 129 RHs~I~sL--LGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 129 RHSFIASL--LGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred HHHHHHHH--hCCcEEEEEEeeecccccCHH
Confidence 1 222222 24 456777899999986554
No 374
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=95.18 E-value=0.14 Score=57.64 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=76.7
Q ss_pred CEEEEEccCCCCHHHHHHHHh--CCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 48 PQVAVVGSQSSGKSSVLEALV--GRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~--G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
-+.++|-.+-||||||-|.|+ |.-+ +..|.+..+ .+ +.+ .-.|+=++ +.
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaI--q~AG~Vk~r-------k~------~~~------a~SDWM~i------Ek-- 63 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAI--QEAGTVKGR-------KS------GKH------AKSDWMEI------EK-- 63 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchh--hhcceeeec-------cC------Ccc------cccHHHHH------HH--
Confidence 458999999999999999987 3221 122211111 00 000 01122122 11
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
..|||...-.+...+. ..-+.|+||||--+-+ +| -. +-+...+ ..|+|++|-.++..+. +
T Consensus 64 ----qRGISVtsSVMqF~Y~-~~~iNLLDTPGHeDFS-----ED---TY-----RtLtAvD-sAvMVIDaAKGiE~qT-~ 123 (528)
T COG4108 64 ----QRGISVTSSVMQFDYA-DCLVNLLDTPGHEDFS-----ED---TY-----RTLTAVD-SAVMVIDAAKGIEPQT-L 123 (528)
T ss_pred ----hcCceEEeeEEEeccC-CeEEeccCCCCccccc-----hh---HH-----HHHHhhh-eeeEEEecccCccHHH-H
Confidence 1344433333333322 2357899999964322 11 12 2233333 5567778877787766 6
Q ss_pred HHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
+|..-..-.+.|++-.+||+|.-.+.
T Consensus 124 KLfeVcrlR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 124 KLFEVCRLRDIPIFTFINKLDREGRD 149 (528)
T ss_pred HHHHHHhhcCCceEEEeeccccccCC
Confidence 77777777789999999999987543
No 375
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=95.07 E-value=0.027 Score=64.31 Aligned_cols=36 Identities=44% Similarity=0.652 Sum_probs=30.2
Q ss_pred HHhCCC-CCCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 37 AQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 37 ~~~g~~-~~~~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
..+|.. ..++.--|+|+|+||+|||||||.|.|..|
T Consensus 26 q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 26 QCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred HHhcccccCcceeEEEEecCcccchHHHHHHHhccCh
Confidence 345543 457888999999999999999999999886
No 376
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.05 E-value=0.033 Score=61.38 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.|.+||.+|+||||+||.|-..++
T Consensus 309 SVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 309 SVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeeecCCCCchHHHHHHHhhccc
Confidence 367899999999999999977654
No 377
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=0.046 Score=54.11 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=46.0
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCC-c-ccc--hHHHHHHHHhCCCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS-D-LAN--SDALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~-d-~~~--~d~l~la~~~dp~g~rtIgVlTK 224 (827)
.|.+||+=| ++..+++-..|....|.|| +|+||.. + +.. +.-..+...=.-.|.+.+..+||
T Consensus 70 ~l~fwdlgG-------------Qe~lrSlw~~yY~~~H~ii-~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lank 135 (197)
T KOG0076|consen 70 PLSFWDLGG-------------QESLRSLWKKYYWLAHGII-YVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANK 135 (197)
T ss_pred eeEEEEcCC-------------hHHHHHHHHHHHHHhceeE-EeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcch
Confidence 589999988 3567788889999998555 4555554 2 222 22123444444468999999999
Q ss_pred CCCCCC
Q 003355 225 LDIMDR 230 (827)
Q Consensus 225 ~D~~~~ 230 (827)
-|+-+.
T Consensus 136 qd~q~~ 141 (197)
T KOG0076|consen 136 QDLQNA 141 (197)
T ss_pred hhhhhh
Confidence 998764
No 378
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.11 Score=56.60 Aligned_cols=28 Identities=36% Similarity=0.596 Sum_probs=24.8
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCC
Q 003355 44 TIELPQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 44 ~~~lP~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
..+.-.|.|+|.||+|||+||+.|.+..
T Consensus 185 ~tdf~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 185 TTDFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CCCeeEEEeecCCCccHHHHHHHHhccC
Confidence 3577789999999999999999999874
No 379
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=94.30 E-value=0.031 Score=57.03 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~ 76 (827)
.+||||+-.+||++||-...-.. ||..
T Consensus 6 K~VvVGDga~GKT~ll~~~t~~~-fp~~ 32 (198)
T KOG0393|consen 6 KCVVVGDGAVGKTCLLISYTTNA-FPEE 32 (198)
T ss_pred EEEEECCCCcCceEEEEEeccCc-Cccc
Confidence 58999999999999999887654 3543
No 380
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=94.21 E-value=0.19 Score=55.70 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=22.6
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.+|-.+|.|--+||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4789999999999999999999854
No 381
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.17 E-value=0.042 Score=55.14 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=24.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~ 77 (827)
.++|+|..+||||||||-|.|-.. |.+.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~-P~~G 54 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET-PASG 54 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC-CCCc
Confidence 689999999999999999999863 7654
No 382
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=94.15 E-value=0.063 Score=59.21 Aligned_cols=66 Identities=26% Similarity=0.304 Sum_probs=45.8
Q ss_pred EEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch--HHHHHHHHhCCCCCceEEeeecCCC
Q 003355 150 ITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 150 ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
+.||||-|-- .-.+..++..+.+.-+..|+|+.|+.....- +-+-++-. .+-|+|+|+||+|+
T Consensus 203 VsfVDtvGHE------------pwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a---~~lPviVvvTK~D~ 267 (527)
T COG5258 203 VSFVDTVGHE------------PWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA---MELPVIVVVTKIDM 267 (527)
T ss_pred EEEEecCCcc------------HHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh---hcCCEEEEEEeccc
Confidence 6899999942 2455556666666656888888888776532 32333333 35899999999999
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
.+.
T Consensus 268 ~~d 270 (527)
T COG5258 268 VPD 270 (527)
T ss_pred CcH
Confidence 974
No 383
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.04 E-value=0.17 Score=60.06 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.|++||+.|||||||++.|+|.- +...|
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~--~p~~G 390 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLL--DPLQG 390 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 69999999999999999999963 44444
No 384
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.91 E-value=0.049 Score=56.92 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCccEEEeecCCC-CcccchH-HHHHHHHhCCCCCceEEeeecCCCC
Q 003355 172 ARIRTMIMSYIKQPSCLILAVTPAN-SDLANSD-ALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 172 ~~i~~lv~~yi~~~~~iIL~V~~a~-~d~~~~d-~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
++--.+++..+.+|. +||+=-|.. -|..+.+ .+.+.+++......||+++|+-..+
T Consensus 148 qQRVAIARAL~~~P~-iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~l 205 (226)
T COG1136 148 QQRVAIARALINNPK-IILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL 205 (226)
T ss_pred HHHHHHHHHHhcCCC-eEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 444455666677775 788765543 3444443 4678888876667899999974433
No 385
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.90 E-value=0.058 Score=44.69 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..+|.|+.+|||||++.||.=.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998643
No 386
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.79 E-value=0.42 Score=52.45 Aligned_cols=78 Identities=26% Similarity=0.214 Sum_probs=49.5
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHH---HHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIE---ARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~---~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK 224 (827)
.++.||||.|--.+. ..+- +.|.+.+...+..+..=+|+|.+|.. .++++.-|+.+...-.=+=+|+||
T Consensus 222 ~DvvliDTAGRLhnk-----~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt---Gqnal~QAk~F~eav~l~GiIlTK 293 (340)
T COG0552 222 IDVVLIDTAGRLHNK-----KNLMDELKKIVRVIKKDDPDAPHEILLVLDATT---GQNALSQAKIFNEAVGLDGIILTK 293 (340)
T ss_pred CCEEEEeCcccccCc-----hhHHHHHHHHHHHhccccCCCCceEEEEEEccc---ChhHHHHHHHHHHhcCCceEEEEe
Confidence 479999999965442 1222 23444455555433334777777765 356667777776655567789999
Q ss_pred CCCCCCccc
Q 003355 225 LDIMDRGTD 233 (827)
Q Consensus 225 ~D~~~~~~~ 233 (827)
+|-..+|--
T Consensus 294 lDgtAKGG~ 302 (340)
T COG0552 294 LDGTAKGGI 302 (340)
T ss_pred cccCCCcce
Confidence 997776643
No 387
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=93.76 E-value=0.073 Score=58.27 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=43.6
Q ss_pred EEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcc--cchHHHHHHHHhCCCCCc
Q 003355 140 LKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--ANSDALQIAGIADPDGYR 217 (827)
Q Consensus 140 l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~~d~l~la~~~dp~g~r 217 (827)
++|+.....-+|||||.|--+ .++..+...--+.-+.-.+.+-+|..+ .+.+-+.+|-.+. .+
T Consensus 211 vkIce~saKviTFIDLAGHEk------------YLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~---VP 275 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEK------------YLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALH---VP 275 (641)
T ss_pred eeeccccceeEEEEeccchhh------------hhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhc---Cc
Confidence 344444444589999999421 111111111222233555555666654 3445456665553 89
Q ss_pred eEEeeecCCCCCC
Q 003355 218 TIGIITKLDIMDR 230 (827)
Q Consensus 218 tIgVlTK~D~~~~ 230 (827)
+++|+||+|....
T Consensus 276 VfvVVTKIDMCPA 288 (641)
T KOG0463|consen 276 VFVVVTKIDMCPA 288 (641)
T ss_pred EEEEEEeeccCcH
Confidence 9999999999864
No 388
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=93.74 E-value=0.24 Score=47.52 Aligned_cols=125 Identities=15% Similarity=0.231 Sum_probs=72.6
Q ss_pred HHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChH
Q 003355 34 DIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFS 113 (827)
Q Consensus 34 d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~ 113 (827)
++|..+-... -.--+|.++|--||||+|+|.-|.|.+. +.-. +
T Consensus 5 til~~~ks~t-~rEirilllGldnAGKTT~LKqL~sED~--~hlt---p------------------------------- 47 (185)
T KOG0074|consen 5 TILCCCKSRT-RREIRILLLGLDNAGKTTFLKQLKSEDP--RHLT---P------------------------------- 47 (185)
T ss_pred HHHHHhcCCC-cceEEEEEEecCCCcchhHHHHHccCCh--hhcc---c-------------------------------
Confidence 4444444332 2345799999999999999999999873 2211 0
Q ss_pred HHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeec
Q 003355 114 EIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVT 193 (827)
Q Consensus 114 ~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~ 193 (827)
.+||+. .++.+.....|+++|.-|= ..|+-.-.+|..+-+ .+++|+
T Consensus 48 ----------------T~GFn~----k~v~~~g~f~LnvwDiGGq-------------r~IRpyWsNYyenvd-~lIyVI 93 (185)
T KOG0074|consen 48 ----------------TNGFNT----KKVEYDGTFHLNVWDIGGQ-------------RGIRPYWSNYYENVD-GLIYVI 93 (185)
T ss_pred ----------------cCCcce----EEEeecCcEEEEEEecCCc-------------cccchhhhhhhhccc-eEEEEE
Confidence 112221 1222333347899998872 345666778999887 455555
Q ss_pred CCCCcccchHH-HHHHHHhCCC---CCceEEeeecCCCCC
Q 003355 194 PANSDLANSDA-LQIAGIADPD---GYRTIGIITKLDIMD 229 (827)
Q Consensus 194 ~a~~d~~~~d~-l~la~~~dp~---g~rtIgVlTK~D~~~ 229 (827)
+.++.-...+. ..++..++.. ..++.+--||-|++.
T Consensus 94 DS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 94 DSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT 133 (185)
T ss_pred eCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh
Confidence 54433222222 2344444433 345566668888764
No 389
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.61 E-value=0.054 Score=55.71 Aligned_cols=28 Identities=39% Similarity=0.700 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~ 77 (827)
-|.|+|..+||||||+|+|.|. +.|.+.
T Consensus 34 FvtViGsNGAGKSTlln~iaG~-l~~t~G 61 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGD-LKPTSG 61 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCc-cccCCc
Confidence 5899999999999999999998 344443
No 390
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=93.53 E-value=0.15 Score=60.60 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=42.3
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
-+.|||+||-.+-. ..+....+=. +..|+.+++..++..+. ..+.+++=-.|.+.|.|+||+|.
T Consensus 73 ~~nlidspghvdf~-------------sevssas~l~-d~alvlvdvvegv~~qt-~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 73 LINLIDSPGHVDFS-------------SEVSSASRLS-DGALVLVDVVEGVCSQT-YAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred EEEEecCCCccchh-------------hhhhhhhhhc-CCcEEEEeeccccchhH-HHHHHHHHHccCceEEEEehhhh
Confidence 47899999976432 1122222222 35566667777776655 56777655568999999999994
No 391
>PRK13695 putative NTPase; Provisional
Probab=93.46 E-value=0.86 Score=45.53 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+++|..++|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998765
No 392
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.43 E-value=0.46 Score=47.27 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
-.|++.|+.++|||+|+..+....
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 369999999999999999998763
No 393
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.36 E-value=0.064 Score=51.09 Aligned_cols=23 Identities=52% Similarity=0.697 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..++||||||++|+|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999999984
No 394
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=93.33 E-value=0.4 Score=53.12 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.3
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
+|..+|-|-=|||||||||.|+-..
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhcc
Confidence 4788999999999999999999764
No 395
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=93.30 E-value=0.38 Score=47.12 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=29.8
Q ss_pred cEEEeecCCCCcccchHHHHHH-HHhCCCCCceEEeeecCCCCCC
Q 003355 187 CLILAVTPANSDLANSDALQIA-GIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 187 ~iIL~V~~a~~d~~~~d~l~la-~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+++|+|+++.......+ ..+. ..+...+.+.|+|+||+|+.++
T Consensus 1 Dvvl~VvD~~~p~~~~~-~~i~~~~~~~~~~p~IiVlNK~Dl~~~ 44 (155)
T cd01849 1 DVILEVLDARDPLGTRS-PDIERVLIKEKGKKLILVLNKADLVPK 44 (155)
T ss_pred CEEEEEEeccCCccccC-HHHHHHHHhcCCCCEEEEEechhcCCH
Confidence 37888888876554433 2333 3455567999999999999753
No 396
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.21 E-value=0.53 Score=46.49 Aligned_cols=126 Identities=20% Similarity=0.258 Sum_probs=73.8
Q ss_pred HHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccC
Q 003355 32 LQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD 111 (827)
Q Consensus 32 l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d 111 (827)
..++|.-+|+- -.--.+++.|=-||||+|||+.|=..+. +.-.+|--|+ .+.
T Consensus 7 F~~VLq~LgL~--kK~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHPT-------------SE~---------- 58 (193)
T KOG0077|consen 7 FSSVLQFLGLY--KKFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPT-------------SEE---------- 58 (193)
T ss_pred HHHHHHHHHHh--ccCceEEEEeecCCchhhHHHHHccccc---cccCCCcCCC-------------hHH----------
Confidence 44566677753 2345799999999999999999865542 2222222220 000
Q ss_pred hHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEe
Q 003355 112 FSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILA 191 (827)
Q Consensus 112 ~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~ 191 (827)
+.|- ....+-+||-|- .+.+..-++|+...++|+..
T Consensus 59 ----------------------------l~Ig---~m~ftt~DLGGH-------------~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 59 ----------------------------LSIG---GMTFTTFDLGGH-------------LQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred ----------------------------heec---CceEEEEccccH-------------HHHHHHHHHHHhhhceeEee
Confidence 0010 124688999983 36677778999988866555
Q ss_pred ecCCCCcccchHH---HHHHHH-hCCCCCceEEeeecCCCCCC
Q 003355 192 VTPANSDLANSDA---LQIAGI-ADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 192 V~~a~~d~~~~d~---l~la~~-~dp~g~rtIgVlTK~D~~~~ 230 (827)
|..+... .-+++ ++.+-. ..-...+.++..||+|.-..
T Consensus 95 vda~d~e-r~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 95 VDAYDQE-RFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred eehhhHH-HhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 5443322 22222 111111 11125789999999999754
No 397
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.17 E-value=0.08 Score=51.09 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEccCCCCHHHHHHHHhCC
Q 003355 50 VAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~ 70 (827)
|+|+|..++|||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999975
No 398
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.11 E-value=0.14 Score=55.71 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+++|..|+||||++..|...
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999865
No 399
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=93.09 E-value=0.21 Score=56.07 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.5
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-..++|+|||...||||||...|+..
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHH
Confidence 35689999999999999998888755
No 400
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=92.92 E-value=0.29 Score=48.02 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=32.4
Q ss_pred HHhcCCccEEEeecCCCCcccchH--HHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 180 SYIKQPSCLILAVTPANSDLANSD--ALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 180 ~yi~~~~~iIL~V~~a~~d~~~~d--~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+-+.+.+ +|++|+++.......+ ..+..+.. ..+.+.|+|+||+|+.++
T Consensus 4 ~~l~~aD-~il~VvD~~~p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~ 54 (157)
T cd01858 4 KVIDSSD-VVIQVLDARDPMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPT 54 (157)
T ss_pred HhhhhCC-EEEEEEECCCCccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCH
Confidence 3455555 8899999887654322 23344332 235899999999999864
No 401
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=92.92 E-value=0.42 Score=48.47 Aligned_cols=54 Identities=13% Similarity=0.077 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.++.++..|+++.+ +||+|+|+........ ..+... ..+.++|+|+||+|+.++
T Consensus 23 ~~~~~l~~~~~~ad-~il~VvD~~~~~~~~~-~~l~~~--~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 23 FILNLLSSISPKKA-LVVHVVDIFDFPGSLI-PRLRLF--GGNNPVILVGNKIDLLPK 76 (190)
T ss_pred HHHHHHHhcccCCc-EEEEEEECccCCCccc-hhHHHh--cCCCcEEEEEEchhcCCC
Confidence 46788889998876 7777777764332211 122222 235899999999999854
No 402
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.81 E-value=2.3 Score=40.97 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=42.1
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH-HHHHHhCCC---CCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL-QIAGIADPD---GYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l-~la~~~dp~---g~rtIgVlTK 224 (827)
.+.++|+-|- ..++.+-+.|......+|.++.+|..|- -.+|. ++-+.+... ....++..||
T Consensus 62 kfNvwdvGGq-------------d~iRplWrhYy~gtqglIFV~Dsa~~dr-~eeAr~ELh~ii~~~em~~~~~LvlANk 127 (180)
T KOG0071|consen 62 KFNVWDVGGQ-------------DKIRPLWRHYYTGTQGLIFVVDSADRDR-IEEARNELHRIINDREMRDAIILILANK 127 (180)
T ss_pred EEeeeeccCc-------------hhhhHHHHhhccCCceEEEEEeccchhh-HHHHHHHHHHHhCCHhhhcceEEEEecC
Confidence 4678998872 4778888899998877777766665432 22222 333333322 2345556699
Q ss_pred CCCCCC
Q 003355 225 LDIMDR 230 (827)
Q Consensus 225 ~D~~~~ 230 (827)
-|+.+.
T Consensus 128 QDlp~A 133 (180)
T KOG0071|consen 128 QDLPDA 133 (180)
T ss_pred cccccc
Confidence 998763
No 403
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.69 E-value=0.085 Score=55.58 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
-|++||..|+||||||+.|.|..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999986
No 404
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=92.60 E-value=0.49 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=22.4
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.+|-.+|.|--+||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4688999999999999999999854
No 405
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=92.53 E-value=0.46 Score=47.40 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+.+.+...+.+.+ +||+|+++.......+ ..+...+. +++.|+|+||+|+.+
T Consensus 8 ~~~~~~~~~i~~aD-~il~v~D~~~~~~~~~-~~i~~~~~--~k~~ilVlNK~Dl~~ 60 (171)
T cd01856 8 KALRQIKEKLKLVD-LVIEVRDARIPLSSRN-PLLEKILG--NKPRIIVLNKADLAD 60 (171)
T ss_pred HHHHHHHHHHhhCC-EEEEEeeccCccCcCC-hhhHhHhc--CCCEEEEEehhhcCC
Confidence 34455578888887 8888888876554433 23344332 478999999999975
No 406
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.49 E-value=0.11 Score=50.53 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=20.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
|.|+|||..++|||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999865
No 407
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=92.47 E-value=1.1 Score=49.50 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=29.1
Q ss_pred HHHHHHHhCCC---CCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 32 LQDIFAQLGSQ---STIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 32 l~d~~~~~g~~---~~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
|+..|+..+.+ +.-..|+++|||+.++|||||...|+..
T Consensus 85 lH~ale~~R~~~e~~~~~GPrv~vVGp~d~GKsTl~r~L~ny 126 (415)
T KOG2749|consen 85 LHAALEKRRMQAEEESSYGPRVMVVGPTDVGKSTLCRILLNY 126 (415)
T ss_pred HHHHHHHHhhhhhhhhccCCEEEEECCCccchHHHHHHHHHH
Confidence 45555555543 2345899999999999999999888854
No 408
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.40 E-value=0.11 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|.++|||||++++|+|.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999986
No 409
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.36 E-value=0.077 Score=52.45 Aligned_cols=22 Identities=36% Similarity=0.773 Sum_probs=17.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+|+|+|..|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5999999999999999999855
No 410
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.29 E-value=0.12 Score=51.33 Aligned_cols=30 Identities=27% Similarity=0.565 Sum_probs=24.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCcc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~ 80 (827)
-+.+||+.+|||||||++|.++ + +...|.+
T Consensus 34 VLgiVGESGSGKtTLL~~is~r-l-~p~~G~v 63 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR-L-TPDAGTV 63 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc-c-CCCCCeE
Confidence 5789999999999999999998 3 4455544
No 411
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.28 E-value=0.13 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+|+|..+|||||+++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999985
No 412
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=92.21 E-value=0.63 Score=57.32 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|||..|||||||++.|+|.
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999997
No 413
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.19 E-value=0.51 Score=56.70 Aligned_cols=26 Identities=42% Similarity=0.696 Sum_probs=23.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCcc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~ 75 (827)
-.+++||..|||||||++.|+|.- |.
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~--p~ 402 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL--PY 402 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CC
Confidence 368999999999999999999973 65
No 414
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=91.99 E-value=0.37 Score=50.34 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=26.6
Q ss_pred hcCCccEEEeecCCC-CcccchH-HHHHHHHhCCCCCceEEeeecCCCC
Q 003355 182 IKQPSCLILAVTPAN-SDLANSD-ALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 182 i~~~~~iIL~V~~a~-~d~~~~d-~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
++..+ ++++|++.+ ..+.+.+ +.+++.++. -+|+.+|+||+|..
T Consensus 153 ~~~vD-~vivVvDpS~~sl~taeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVD-LVIVVVDPSYKSLRTAERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCC-EEEEEeCCcHHHHHHHHHHHHHHHHhC--CceEEEEEeeccch
Confidence 44445 566666554 3444433 234444443 29999999999976
No 415
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.94 E-value=0.13 Score=52.71 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=26.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC-CCccCCCccccce
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD-FLPRGNDICTRRP 84 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~-~lP~~~g~~Tr~p 84 (827)
.|+|+|..+||||||++.|.+.- -+......+||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 58999999999999999999862 1223334566665
No 416
>COG3910 Predicted ATPase [General function prediction only]
Probab=91.90 E-value=0.21 Score=50.39 Aligned_cols=46 Identities=33% Similarity=0.615 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHh-CCCCCccCCC
Q 003355 26 IPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALV-GRDFLPRGND 78 (827)
Q Consensus 26 ~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~-G~~~lP~~~g 78 (827)
+|++.-|+. .| .+..|--+++|..++|||||||+|. |..+-+.|.+
T Consensus 23 lPa~r~l~~---~L----eF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~ 69 (233)
T COG3910 23 LPAFRHLEE---RL----EFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGGG 69 (233)
T ss_pred chHHHhhhh---hc----cccCceEEEEcCCCccHHHHHHHHHhhccccccCCC
Confidence 456665553 12 4677888999999999999999997 4455455544
No 417
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=91.89 E-value=0.46 Score=51.93 Aligned_cols=133 Identities=20% Similarity=0.330 Sum_probs=84.5
Q ss_pred CCC--EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 46 ELP--QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 46 ~lP--~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
+.| .|.-||.--.||+||--||+-.- .. ..+-++.++++|.+.-++
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkil--a~----------------------------~g~A~~~kydeID~APEE-- 98 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKIL--AE----------------------------KGGAKFKKYDEIDKAPEE-- 98 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHH--Hh----------------------------ccccccccHhhhhcChhh--
Confidence 445 35669999999999999998641 10 011233445554332211
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcc-cch
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL-ANS 202 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~-~~~ 202 (827)
...|++-+..+++.+.+. -...=+|-||-. ..+++||....+- +..||+|......+ .+.
T Consensus 99 -----kaRGITIn~aHveYeTa~-RhYaH~DCPGHA------------DYIKNMItGaaqM-DGaILVVaatDG~MPQTr 159 (449)
T KOG0460|consen 99 -----KARGITINAAHVEYETAK-RHYAHTDCPGHA------------DYIKNMITGAAQM-DGAILVVAATDGPMPQTR 159 (449)
T ss_pred -----hhccceEeeeeeeeeccc-cccccCCCCchH------------HHHHHhhcCcccc-CceEEEEEcCCCCCcchH
Confidence 235677777778877654 356779999954 3677777665553 44666665444333 344
Q ss_pred HHHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 203 DALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 203 d~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
+-+-+|+++.- .++++-+||.|+++..
T Consensus 160 EHlLLArQVGV--~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 160 EHLLLARQVGV--KHIVVFINKVDLVDDP 186 (449)
T ss_pred HHHHHHHHcCC--ceEEEEEecccccCCH
Confidence 55789999863 6778888999999643
No 418
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.82 E-value=0.15 Score=52.61 Aligned_cols=28 Identities=36% Similarity=0.412 Sum_probs=23.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++++|..|||||||++.|+|.. +...|
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 56 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL--GPTSG 56 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 47999999999999999999973 44444
No 419
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=91.64 E-value=0.76 Score=49.76 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 175 RTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 175 ~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
...+.+.+...+ +||+|++|...+...+ ..+.+.+. +++.|+|+||+|+.++
T Consensus 12 ~~~~~~~l~~aD-vVl~V~Dar~p~~~~~-~~i~~~l~--~kp~IiVlNK~DL~~~ 63 (276)
T TIGR03596 12 RREIKEKLKLVD-VVIEVLDARIPLSSRN-PMIDEIRG--NKPRLIVLNKADLADP 63 (276)
T ss_pred HHHHHHHHhhCC-EEEEEEeCCCCCCCCC-hhHHHHHC--CCCEEEEEEccccCCH
Confidence 344567777776 8888889876555433 23444442 5899999999999753
No 420
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.62 E-value=0.16 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.640 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46899999999999999999973
No 421
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.61 E-value=0.16 Score=52.47 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=23.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++++|..|||||||++.|.|. ++...|
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G 54 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL--TPPSSG 54 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC--CCCCcc
Confidence 7899999999999999999996 344444
No 422
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.52 E-value=0.16 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..+||||||++.|.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 423
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=91.39 E-value=0.24 Score=47.73 Aligned_cols=52 Identities=10% Similarity=0.229 Sum_probs=35.5
Q ss_pred HHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCC--CCCceEEeeecCCCCCC
Q 003355 177 MIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADP--DGYRTIGIITKLDIMDR 230 (827)
Q Consensus 177 lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp--~g~rtIgVlTK~D~~~~ 230 (827)
.+.+.+...+ ++|+|+++.......+ ..+.+.+.. .+.+.|+|+||+|+.++
T Consensus 4 ~~~~~i~~aD-~vl~ViD~~~p~~~~~-~~l~~~l~~~~~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 4 QLWRVVERSD-IVVQIVDARNPLLFRP-PDLERYVKEVDPRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHHHHhhCC-EEEEEEEccCCcccCC-HHHHHHHHhccCCCcEEEEEechhcCCH
Confidence 3456777776 7778888877665543 234443333 36899999999999754
No 424
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.38 E-value=0.18 Score=53.03 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++|+|..|||||||++.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 425
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=91.38 E-value=0.56 Score=50.40 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+--|.|+|.+-+|||.|+|.|+|.
T Consensus 21 v~vvsi~G~~rtGKSfLln~l~~~ 44 (260)
T PF02263_consen 21 VAVVSIVGPYRTGKSFLLNQLLGP 44 (260)
T ss_dssp EEEEEEEEETTSSHHHHHHHHCCB
T ss_pred EEEEEeecCCccchHHHHHHHhcc
Confidence 335788999999999999999985
No 426
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.30 E-value=0.17 Score=52.39 Aligned_cols=28 Identities=43% Similarity=0.558 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++|+|..|||||||++.|+|.- |...|
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G 59 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD--RPTSG 59 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc--CCCce
Confidence 58999999999999999999973 43444
No 427
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.29 E-value=0.18 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 428
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.22 E-value=0.14 Score=51.79 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=25.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccce
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p 84 (827)
-|||.|+.++|||||+.+|+...-+-.+...+||-|
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 389999999999999999997752222333344443
No 429
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.19 E-value=0.19 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..|||||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 430
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.14 E-value=0.2 Score=51.05 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..+||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
No 431
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.12 E-value=0.21 Score=50.39 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999984
No 432
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.08 E-value=0.19 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..+||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 433
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.07 E-value=0.21 Score=52.40 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++++|..|||||||++.|.|.- |...|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 60 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE--RPTSG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58999999999999999999973 44444
No 434
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=91.04 E-value=2.8 Score=42.96 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHh
Q 003355 49 QVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~ 68 (827)
.++++|..++||||||..|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999988
No 435
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.00 E-value=0.21 Score=51.34 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=23.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++|+|..+|||||||+.|.|.. +...|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 55 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI--KESSG 55 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCce
Confidence 58999999999999999999973 33444
No 436
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=90.99 E-value=0.21 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 437
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.95 E-value=0.22 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
-.++++|..++|||||++.|.|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999974
No 438
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.91 E-value=0.2 Score=52.08 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|..|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999997
No 439
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=90.89 E-value=0.2 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..+||||||++.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 440
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=90.88 E-value=0.2 Score=58.41 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=24.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
-.+++||..|||||||++.|+|. +|...|
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~--~~~~~G 376 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGF--LAPTQG 376 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCc--CCCCCc
Confidence 37999999999999999999996 454444
No 441
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.88 E-value=0.17 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..+||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68999999999999999999973
No 442
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=90.87 E-value=1.1 Score=48.98 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 175 RTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 175 ~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
...+.+.+...+ +||.|+++...+...+ ..+.+.+. +++.|+|+||+|+.+.
T Consensus 15 ~~~l~~~l~~aD-vIL~VvDar~p~~~~~-~~l~~~~~--~kp~iiVlNK~DL~~~ 66 (287)
T PRK09563 15 RREIKENLKLVD-VVIEVLDARIPLSSEN-PMIDKIIG--NKPRLLILNKSDLADP 66 (287)
T ss_pred HHHHHHHhhhCC-EEEEEEECCCCCCCCC-hhHHHHhC--CCCEEEEEEchhcCCH
Confidence 344567777776 8888999877665443 23333332 6899999999999753
No 443
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.84 E-value=0.2 Score=55.94 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=25.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~T 81 (827)
-.|+|+|.+||||||++++|++. +|....++|
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 45999999999999999999986 365544433
No 444
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.83 E-value=0.21 Score=51.99 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|+|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999973
No 445
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=90.83 E-value=0.21 Score=51.97 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-++|+|..+|||||+|++|+|.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl 52 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGL 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999997
No 446
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.78 E-value=0.22 Score=51.39 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++|+|..+||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999997
No 447
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.77 E-value=0.21 Score=51.44 Aligned_cols=22 Identities=18% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|..+||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999997
No 448
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.75 E-value=0.24 Score=48.56 Aligned_cols=30 Identities=37% Similarity=0.446 Sum_probs=24.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~ 79 (827)
..++++|..++|||||+++|.|.- +...|.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~ 55 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGE 55 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccE
Confidence 468999999999999999999973 444553
No 449
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=90.73 E-value=0.22 Score=51.32 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=24.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~ 79 (827)
.++|+|..++|||||+++|+|.. +...|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~ 64 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL--EAEEGK 64 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCCe
Confidence 58999999999999999999973 444553
No 450
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=90.73 E-value=0.22 Score=51.67 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..+||||||++.|.|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999973
No 451
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.72 E-value=0.25 Score=50.31 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+|+|..|||||||++.|+..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999875
No 452
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=90.70 E-value=0.23 Score=51.62 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=24.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCcc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~ 80 (827)
.++++|..+||||||++.|+|.. |-..|.+
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i 44 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD--APDEGDF 44 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--cCCCCCE
Confidence 47899999999999999999973 4455543
No 453
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.70 E-value=0.23 Score=50.61 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=23.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++++|..++|||||+..|.|....+...|
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G 64 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTAGVITG 64 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcce
Confidence 578999999999999999999742233444
No 454
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=90.70 E-value=0.21 Score=52.47 Aligned_cols=22 Identities=50% Similarity=0.677 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++|+|..|||||||++.|.|.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999997
No 455
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=90.67 E-value=0.25 Score=52.15 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++|+|..|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 456
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=90.62 E-value=0.25 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 457
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=90.61 E-value=0.22 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..+||||||+++|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999973
No 458
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.59 E-value=0.24 Score=49.15 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..++|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999984
No 459
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=90.58 E-value=0.2 Score=50.32 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.6
Q ss_pred CCCEEEEEccCCCCHHHHHHHHh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~ 68 (827)
+.|.|+|+|.+||||||+.+.|.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999999998
No 460
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=90.55 E-value=0.23 Score=52.12 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=23.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++++|..|||||||+..|.|.- |...|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G 55 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFL--RPTSG 55 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--CCCCc
Confidence 58999999999999999999973 44444
No 461
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.49 E-value=0.26 Score=50.84 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=23.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++++|..++|||||++.|.|.. +...|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 57 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL--PPAAG 57 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 57899999999999999999974 33444
No 462
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=90.49 E-value=0.26 Score=50.55 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++|+|..++|||||++.|.|.- |...|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLS--PPLAG 55 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58999999999999999999973 44444
No 463
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=90.46 E-value=0.23 Score=52.45 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++|+|..|||||||++.|.|.. +...|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 57 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE--MPRSG 57 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 58999999999999999999974 43444
No 464
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=90.46 E-value=0.24 Score=51.05 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=23.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++++|..|||||||++.|+|.. |...|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 55 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE--EPDSG 55 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58999999999999999999973 44444
No 465
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.45 E-value=0.26 Score=51.54 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++|+|..++|||||++.|.|.. |-..|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 58 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY--DPQKG 58 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCC
Confidence 48999999999999999999973 44445
No 466
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.41 E-value=0.26 Score=51.17 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++|+|..++|||||++.|.|.- +...|
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 66 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL--HVESG 66 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCe
Confidence 58899999999999999999973 44455
No 467
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=90.41 E-value=0.24 Score=51.35 Aligned_cols=29 Identities=34% Similarity=0.491 Sum_probs=23.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~ 79 (827)
.++|+|..+||||||++.|.|.. |...|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~ 60 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY--KPTSGS 60 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCCe
Confidence 57899999999999999999974 444453
No 468
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=90.37 E-value=0.26 Score=51.89 Aligned_cols=28 Identities=36% Similarity=0.377 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++|+|..+||||||++.|.|.- |...|
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G 58 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY--DPTSG 58 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC--CCCCC
Confidence 57999999999999999999973 44445
No 469
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.35 E-value=0.22 Score=50.32 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.++|+|..+|||||||++|++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 579999999999999999864
No 470
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=90.30 E-value=0.25 Score=54.34 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=24.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~ 79 (827)
.++++|..+||||||++.|.|.- |...|.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~--~p~~G~ 63 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALL--LPDTGT 63 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC--CCCCcE
Confidence 58999999999999999999973 444453
No 471
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.29 E-value=0.28 Score=49.35 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=23.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++++|..+||||||++.|+|.. |...|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE--EPDSG 55 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 57899999999999999999973 44444
No 472
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=90.28 E-value=0.26 Score=50.86 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|..+||||||++.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999997
No 473
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=90.27 E-value=0.24 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..|+|||||++.|.|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 474
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.23 E-value=0.25 Score=52.01 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|.|.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999973
No 475
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=90.21 E-value=0.27 Score=52.90 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++|+|..+||||||++.|+|.- +..+|
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~--~p~~G 68 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI--EPTSG 68 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCC
Confidence 58899999999999999999973 44444
No 476
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=90.19 E-value=0.26 Score=51.38 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++|+|..+||||||++.|.|.- |...|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 60 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL--KPTSG 60 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 68999999999999999999973 43444
No 477
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=90.17 E-value=0.26 Score=50.78 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999973
No 478
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=90.16 E-value=0.26 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++|+|..+||||||++.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999996
No 479
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=90.15 E-value=0.28 Score=51.77 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++++|..+||||||++.|.|.. +...|
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 58 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV--PRDAG 58 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58999999999999999999973 44444
No 480
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=90.13 E-value=0.26 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..|||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999973
No 481
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.12 E-value=0.29 Score=48.91 Aligned_cols=23 Identities=17% Similarity=0.481 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 482
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=90.08 E-value=0.26 Score=54.73 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
-+|++|+.||||||||+.|.|..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999986
No 483
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=90.07 E-value=0.26 Score=50.90 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..+||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999973
No 484
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.07 E-value=0.7 Score=50.24 Aligned_cols=69 Identities=22% Similarity=0.254 Sum_probs=43.8
Q ss_pred EEEEeCCCCCcC-C---CCCCchHHHHHHHHHHHHHhcCCccEEEe--ecCCCCcccchHHHHHHHHhCCCCCceEEeee
Q 003355 150 ITLVDLPGITKV-P---VGEQPADIEARIRTMIMSYIKQPSCLILA--VTPANSDLANSDALQIAGIADPDGYRTIGIIT 223 (827)
Q Consensus 150 ltLVDlPGi~~~-~---~~~q~~di~~~i~~lv~~yi~~~~~iIL~--V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlT 223 (827)
|.+|.|+.-.+. | .++| ++--.+++.-..+|. |+|| .++|-+.-+++..+.+.+.+.....=||+.+|
T Consensus 126 LelVgL~dk~~~yP~qLSGGQ-----KQRVaIARALa~~P~-iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlIT 199 (339)
T COG1135 126 LELVGLSDKADRYPAQLSGGQ-----KQRVAIARALANNPK-ILLCDEATSALDPETTQSILELLKDINRELGLTIVLIT 199 (339)
T ss_pred HHHcCChhhhccCchhcCcch-----hhHHHHHHHHhcCCC-EEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 456666654322 1 2444 333445555566775 6666 23444556677789999999988888999998
Q ss_pred c
Q 003355 224 K 224 (827)
Q Consensus 224 K 224 (827)
+
T Consensus 200 H 200 (339)
T COG1135 200 H 200 (339)
T ss_pred c
Confidence 5
No 485
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=90.04 E-value=0.22 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999973
No 486
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=90.03 E-value=0.28 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..+||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999999973
No 487
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.99 E-value=0.29 Score=50.40 Aligned_cols=27 Identities=37% Similarity=0.708 Sum_probs=23.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~ 76 (827)
..+|+|..+|||||||.+|+|. +.|.+
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe-l~p~~ 55 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE-LSPDS 55 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc-cCCCC
Confidence 5799999999999999999998 44543
No 488
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.98 E-value=0.27 Score=51.63 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++|+|..+||||||++.|.|.. |...|
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G 56 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY--DVSSG 56 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCC
Confidence 57999999999999999999974 44444
No 489
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=89.96 E-value=0.25 Score=52.61 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 44 TIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 44 ~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++....++||+.+||||||++||.+.
T Consensus 22 ~~~~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 22 GFDPQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999876
No 490
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=89.94 E-value=0.27 Score=51.32 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..++|||||++.|.|..
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999999973
No 491
>PRK10908 cell division protein FtsE; Provisional
Probab=89.94 E-value=0.29 Score=50.94 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=23.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
-.++|+|..+||||||++.|.|.. |...|
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 57 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE--RPSAG 57 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 357899999999999999999973 44444
No 492
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.89 E-value=0.3 Score=51.62 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=23.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++|+|..+||||||++.|+|.- +-..|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 58 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI--DPTEG 58 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58899999999999999999973 43444
No 493
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.87 E-value=0.31 Score=50.29 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++|+|..+||||||+..|+|.. |...|
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~--~~~~G 53 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFE--TPQSG 53 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58999999999999999999983 44444
No 494
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.86 E-value=0.99 Score=57.58 Aligned_cols=28 Identities=39% Similarity=0.592 Sum_probs=23.9
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 44 TIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 44 ~~~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
-.+||=-+|||.+++||||+|.. +|.+|
T Consensus 122 lyeLPWy~viG~pgsGKTtal~~-sgl~F 149 (1188)
T COG3523 122 LYELPWYMVIGPPGSGKTTALLN-SGLQF 149 (1188)
T ss_pred hhcCCceEEecCCCCCcchHHhc-ccccC
Confidence 46999999999999999999877 46654
No 495
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=89.86 E-value=0.29 Score=52.31 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-++++|..||||||||.+|.|.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3799999999999999999996
No 496
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.83 E-value=0.32 Score=50.33 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.|++||+.||||||||.+|-|.+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 57899999999999999999986
No 497
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=89.83 E-value=1.3 Score=38.39 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.3
Q ss_pred EEEEccCCCCHHHHHHHHhCC
Q 003355 50 VAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~ 70 (827)
|++.|..++|||++...|...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688899999999999998754
No 498
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=89.82 E-value=0.28 Score=52.12 Aligned_cols=28 Identities=36% Similarity=0.573 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.++|+|..|||||||++.|+|.. |...|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 58 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRL--APDHG 58 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58999999999999999999973 44444
No 499
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=89.82 E-value=0.32 Score=48.69 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..++|||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999999973
No 500
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.81 E-value=0.27 Score=52.70 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=24.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCcc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~ 80 (827)
.++|+|..+||||||++.|+|.. +-..|.+
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~--~p~~G~I 57 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKL--KPNLGKF 57 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCCceE
Confidence 69999999999999999999983 4445543
Done!