Query 003355
Match_columns 827
No_of_seqs 373 out of 2786
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 22:26:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 3E-112 1E-116 1010.0 52.5 705 21-745 25-770 (772)
2 3szr_A Interferon-induced GTP- 100.0 5.2E-89 1.8E-93 807.0 51.1 577 21-741 20-607 (608)
3 3t34_A Dynamin-related protein 100.0 2.7E-47 9.2E-52 424.3 28.4 319 22-340 1-328 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 6.3E-46 2.2E-50 412.2 32.3 338 21-360 5-345 (353)
5 3ljb_A Interferon-induced GTP- 100.0 2E-40 6.7E-45 349.1 20.7 263 340-716 4-271 (271)
6 1jwy_B Dynamin A GTPase domain 100.0 3.6E-38 1.2E-42 343.2 27.2 309 23-332 1-315 (315)
7 2aka_B Dynamin-1; fusion prote 100.0 3.7E-36 1.3E-40 324.5 31.1 299 22-322 1-299 (299)
8 2j69_A Bacterial dynamin-like 99.7 5.9E-17 2E-21 194.2 21.6 189 23-230 49-245 (695)
9 4dhe_A Probable GTP-binding pr 99.4 2.3E-12 7.8E-17 131.8 16.0 129 45-230 27-159 (223)
10 2qpt_A EH domain-containing pr 99.4 3.7E-11 1.3E-15 140.2 28.0 164 46-230 64-233 (550)
11 3iev_A GTP-binding protein ERA 99.4 5.1E-12 1.8E-16 137.1 17.4 126 47-229 10-136 (308)
12 3pqc_A Probable GTP-binding pr 99.4 1.1E-11 3.8E-16 123.2 18.5 125 45-230 21-148 (195)
13 1wf3_A GTP-binding protein; GT 99.4 3.2E-12 1.1E-16 138.3 13.7 125 46-231 6-133 (301)
14 1svi_A GTP-binding protein YSX 99.3 1.6E-11 5.6E-16 122.4 17.0 125 45-230 21-149 (195)
15 3t5d_A Septin-7; GTP-binding p 99.3 1.6E-11 5.3E-16 130.8 15.6 136 48-230 9-159 (274)
16 3lxx_A GTPase IMAP family memb 99.3 1.9E-11 6.4E-16 127.2 11.9 127 46-230 28-160 (239)
17 4dcu_A GTP-binding protein ENG 99.2 7.4E-11 2.5E-15 134.9 15.2 151 22-231 169-322 (456)
18 2dyk_A GTP-binding protein; GT 99.2 3.4E-11 1.1E-15 115.8 9.3 122 47-230 1-123 (161)
19 2xtp_A GTPase IMAP family memb 99.2 7.2E-11 2.4E-15 124.3 12.4 126 46-229 21-153 (260)
20 3iby_A Ferrous iron transport 99.2 6.1E-11 2.1E-15 125.2 11.7 121 47-229 1-124 (256)
21 1ega_A Protein (GTP-binding pr 99.2 2.2E-11 7.5E-16 131.7 8.1 123 45-229 6-130 (301)
22 2h57_A ADP-ribosylation factor 99.2 5.9E-11 2E-15 118.2 9.9 116 46-230 20-141 (190)
23 1mky_A Probable GTP-binding pr 99.2 1.1E-10 3.9E-15 132.7 13.5 123 47-229 1-124 (439)
24 2hjg_A GTP-binding protein ENG 99.2 1.5E-10 5E-15 131.6 13.6 151 21-230 148-301 (436)
25 2qu8_A Putative nucleolar GTP- 99.1 6.9E-10 2.4E-14 114.3 16.6 126 46-230 28-157 (228)
26 2cxx_A Probable GTP-binding pr 99.1 1.1E-09 3.7E-14 108.3 17.1 123 47-230 1-137 (190)
27 2lkc_A Translation initiation 99.1 1.3E-10 4.4E-15 113.8 10.3 118 44-230 5-122 (178)
28 3lxw_A GTPase IMAP family memb 99.1 1.2E-10 4.1E-15 122.2 10.4 126 47-229 21-153 (247)
29 1ky3_A GTP-binding protein YPT 99.1 3E-10 1E-14 111.3 12.6 119 46-229 7-132 (182)
30 4dcu_A GTP-binding protein ENG 99.1 5.6E-11 1.9E-15 135.8 8.3 125 45-230 21-146 (456)
31 3q72_A GTP-binding protein RAD 99.1 2.1E-10 7.1E-15 111.0 11.1 116 47-230 2-121 (166)
32 4bas_A ADP-ribosylation factor 99.1 5.3E-10 1.8E-14 111.6 13.7 117 45-230 15-142 (199)
33 2il1_A RAB12; G-protein, GDP, 99.1 2.8E-10 9.7E-15 113.8 11.7 117 47-229 26-145 (192)
34 1xzp_A Probable tRNA modificat 99.1 1.6E-10 5.5E-15 132.5 10.9 120 48-230 244-365 (482)
35 3geh_A MNME, tRNA modification 99.1 1.1E-10 3.8E-15 133.2 9.1 148 48-262 225-373 (462)
36 3gee_A MNME, tRNA modification 99.1 8.4E-11 2.9E-15 134.7 8.2 121 48-230 234-358 (476)
37 3a1s_A Iron(II) transport prot 99.1 2.1E-10 7.2E-15 121.2 10.4 117 47-229 5-124 (258)
38 1zbd_A Rabphilin-3A; G protein 99.1 5E-10 1.7E-14 112.5 11.9 167 46-311 7-177 (203)
39 3tw8_B RAS-related protein RAB 99.1 2.4E-10 8.1E-15 111.9 9.3 27 46-72 8-34 (181)
40 1wms_A RAB-9, RAB9, RAS-relate 99.1 8.9E-10 3E-14 107.6 13.4 27 46-72 6-32 (177)
41 2hjg_A GTP-binding protein ENG 99.1 2.1E-10 7.3E-15 130.3 10.2 123 47-230 3-126 (436)
42 3cph_A RAS-related protein SEC 99.1 8.9E-10 3E-14 111.3 13.7 117 46-228 19-138 (213)
43 3bc1_A RAS-related protein RAB 99.1 3.7E-10 1.3E-14 111.7 10.7 67 149-229 71-141 (195)
44 2ged_A SR-beta, signal recogni 99.1 3.1E-10 1E-14 113.0 10.0 55 18-72 19-73 (193)
45 3clv_A RAB5 protein, putative; 99.1 5.1E-10 1.8E-14 111.4 11.5 65 148-226 93-158 (208)
46 2f7s_A C25KG, RAS-related prot 99.1 1E-09 3.5E-14 111.6 13.9 67 149-229 85-155 (217)
47 2g6b_A RAS-related protein RAB 99.1 2.9E-10 9.8E-15 111.5 9.4 119 47-230 10-131 (180)
48 3k53_A Ferrous iron transport 99.1 3.2E-10 1.1E-14 120.3 10.5 118 46-229 2-123 (271)
49 4dsu_A GTPase KRAS, isoform 2B 99.1 1.8E-09 6.1E-14 106.5 15.2 116 48-230 5-124 (189)
50 3con_A GTPase NRAS; structural 99.1 1.3E-09 4.3E-14 108.3 14.0 116 47-229 21-140 (190)
51 1g16_A RAS-related protein SEC 99.1 5.7E-10 1.9E-14 108.0 11.2 116 48-229 4-122 (170)
52 3tkl_A RAS-related protein RAB 99.1 7.2E-10 2.5E-14 110.3 12.2 119 46-230 15-136 (196)
53 2a5j_A RAS-related protein RAB 99.1 2.5E-10 8.4E-15 113.9 8.7 117 47-229 21-140 (191)
54 1h65_A Chloroplast outer envel 99.1 8.5E-10 2.9E-14 117.0 13.3 126 45-231 37-170 (270)
55 1z0j_A RAB-22, RAS-related pro 99.1 2.5E-10 8.6E-15 110.5 8.3 118 47-230 6-126 (170)
56 1kao_A RAP2A; GTP-binding prot 99.1 7.4E-10 2.5E-14 106.5 11.5 67 149-229 52-122 (167)
57 1u8z_A RAS-related protein RAL 99.0 5E-10 1.7E-14 107.9 10.2 116 47-229 4-123 (168)
58 1r8s_A ADP-ribosylation factor 99.0 1.7E-09 5.8E-14 104.2 13.9 69 148-230 44-116 (164)
59 2a9k_A RAS-related protein RAL 99.0 9.3E-10 3.2E-14 108.2 12.1 118 45-229 16-137 (187)
60 1z0f_A RAB14, member RAS oncog 99.0 5.8E-10 2E-14 108.9 10.5 118 46-229 14-134 (179)
61 3b1v_A Ferrous iron uptake tra 99.0 3.8E-10 1.3E-14 120.1 9.9 117 47-229 3-121 (272)
62 2nzj_A GTP-binding protein REM 99.0 1E-09 3.6E-14 106.8 11.9 26 47-72 4-29 (175)
63 2ce2_X GTPase HRAS; signaling 99.0 2E-09 7E-14 103.2 13.6 25 48-72 4-28 (166)
64 1c1y_A RAS-related protein RAP 99.0 1.5E-09 5.1E-14 104.7 12.7 25 48-72 4-28 (167)
65 2fn4_A P23, RAS-related protei 99.0 5.5E-10 1.9E-14 109.3 9.8 117 46-229 8-128 (181)
66 1ek0_A Protein (GTP-binding pr 99.0 4.4E-10 1.5E-14 108.7 8.9 117 48-230 4-123 (170)
67 2bme_A RAB4A, RAS-related prot 99.0 9.7E-10 3.3E-14 108.4 11.6 117 47-229 10-129 (186)
68 2y8e_A RAB-protein 6, GH09086P 99.0 2E-10 6.8E-15 112.2 6.5 118 47-230 14-134 (179)
69 2efe_B Small GTP-binding prote 99.0 4.7E-10 1.6E-14 110.1 9.1 119 46-230 11-132 (181)
70 2h17_A ADP-ribosylation factor 99.0 6.3E-10 2.1E-14 109.9 10.0 113 47-230 21-137 (181)
71 2qtf_A Protein HFLX, GTP-bindi 99.0 2.6E-09 9E-14 118.4 16.1 126 46-231 178-308 (364)
72 1z08_A RAS-related protein RAB 99.0 4.5E-10 1.5E-14 108.9 8.7 118 47-230 6-126 (170)
73 1vg8_A RAS-related protein RAB 99.0 8.1E-10 2.8E-14 111.1 10.7 28 46-73 7-34 (207)
74 1mky_A Probable GTP-binding pr 99.0 1.4E-09 4.8E-14 123.6 13.9 153 21-230 149-307 (439)
75 2bov_A RAla, RAS-related prote 99.0 1.5E-09 5.2E-14 108.9 12.6 119 44-229 11-133 (206)
76 2erx_A GTP-binding protein DI- 99.0 4.4E-10 1.5E-14 108.9 8.2 25 48-72 4-28 (172)
77 1upt_A ARL1, ADP-ribosylation 99.0 1.7E-09 5.8E-14 104.9 12.5 113 47-230 7-123 (171)
78 1z06_A RAS-related protein RAB 99.0 8.5E-10 2.9E-14 109.7 10.5 118 46-229 19-141 (189)
79 1zd9_A ADP-ribosylation factor 99.0 2.2E-09 7.6E-14 106.7 13.4 114 47-230 22-139 (188)
80 2oil_A CATX-8, RAS-related pro 99.0 8.1E-10 2.8E-14 110.1 10.2 118 46-229 24-144 (193)
81 3i8s_A Ferrous iron transport 99.0 5.9E-10 2E-14 118.7 9.3 121 47-229 3-126 (274)
82 1x3s_A RAS-related protein RAB 99.0 1.4E-09 5E-14 107.9 11.4 117 47-229 15-135 (195)
83 3dz8_A RAS-related protein RAB 99.0 5.7E-10 2E-14 111.2 8.4 118 46-229 22-142 (191)
84 3def_A T7I23.11 protein; chlor 99.0 2E-09 6.7E-14 113.7 13.0 125 46-230 35-166 (262)
85 2yc2_C IFT27, small RAB-relate 99.0 7.3E-10 2.5E-14 111.2 9.2 68 148-229 73-146 (208)
86 2fg5_A RAB-22B, RAS-related pr 99.0 1.2E-09 4E-14 109.2 10.4 118 46-229 22-142 (192)
87 2o52_A RAS-related protein RAB 99.0 1.3E-09 4.5E-14 109.7 10.8 118 46-229 24-144 (200)
88 2gf9_A RAS-related protein RAB 99.0 6.9E-10 2.3E-14 110.3 8.3 117 47-229 22-141 (189)
89 4gzl_A RAS-related C3 botulinu 99.0 4.9E-10 1.7E-14 113.3 7.3 118 46-231 29-150 (204)
90 2iwr_A Centaurin gamma 1; ANK 99.0 3.7E-09 1.3E-13 103.6 13.4 26 47-72 7-32 (178)
91 1z2a_A RAS-related protein RAB 99.0 3.1E-10 1.1E-14 109.7 5.5 26 47-72 5-30 (168)
92 4djt_A GTP-binding nuclear pro 99.0 3.7E-10 1.3E-14 115.0 6.2 68 149-230 62-132 (218)
93 1ksh_A ARF-like protein 2; sma 99.0 4.1E-09 1.4E-13 104.2 13.6 114 46-230 17-134 (186)
94 2bcg_Y Protein YP2, GTP-bindin 99.0 1.6E-09 5.5E-14 109.2 10.8 118 47-230 8-128 (206)
95 3oes_A GTPase rhebl1; small GT 99.0 7.4E-10 2.5E-14 111.4 8.1 118 46-230 23-144 (201)
96 2wjg_A FEOB, ferrous iron tran 99.0 1E-09 3.5E-14 108.6 8.9 120 45-229 5-126 (188)
97 1zj6_A ADP-ribosylation factor 99.0 2.4E-09 8.3E-14 106.1 11.4 114 46-230 15-132 (187)
98 3kkq_A RAS-related protein M-R 99.0 2.3E-09 8E-14 105.5 11.0 118 45-229 16-137 (183)
99 1r2q_A RAS-related protein RAB 99.0 1.1E-09 3.8E-14 105.7 8.3 67 149-229 56-125 (170)
100 2ew1_A RAS-related protein RAB 98.9 2.8E-09 9.7E-14 107.8 11.6 118 46-229 25-145 (201)
101 2e87_A Hypothetical protein PH 98.9 3E-08 1E-12 109.6 20.4 126 45-230 165-295 (357)
102 2wji_A Ferrous iron transport 98.9 3E-09 1E-13 103.5 11.0 70 149-229 51-122 (165)
103 3t1o_A Gliding protein MGLA; G 98.9 8.8E-09 3E-13 102.2 14.5 68 149-230 75-150 (198)
104 2hxs_A RAB-26, RAS-related pro 98.9 5.8E-10 2E-14 109.1 5.8 27 46-72 5-31 (178)
105 3t5g_A GTP-binding protein RHE 98.9 1.3E-09 4.3E-14 107.3 8.2 117 47-230 6-126 (181)
106 2b6h_A ADP-ribosylation factor 98.9 3.9E-09 1.3E-13 105.6 11.9 114 46-230 28-145 (192)
107 2gj8_A MNME, tRNA modification 98.9 7.9E-09 2.7E-13 101.6 13.4 75 149-229 53-129 (172)
108 2hup_A RAS-related protein RAB 98.9 3.5E-09 1.2E-13 106.8 10.9 67 149-229 79-148 (201)
109 3qq5_A Small GTP-binding prote 98.9 8.3E-10 2.8E-14 124.5 6.8 124 46-232 33-157 (423)
110 1lnz_A SPO0B-associated GTP-bi 98.9 1.8E-09 6.1E-14 118.6 9.3 124 47-230 158-289 (342)
111 2gco_A H9, RHO-related GTP-bin 98.9 2.5E-09 8.5E-14 107.7 9.5 68 149-231 74-145 (201)
112 2atx_A Small GTP binding prote 98.9 4.6E-09 1.6E-13 104.6 11.4 116 48-231 19-138 (194)
113 3q85_A GTP-binding protein REM 98.9 1.9E-09 6.4E-14 104.5 7.9 26 47-72 2-27 (169)
114 1moz_A ARL1, ADP-ribosylation 98.9 4.4E-09 1.5E-13 103.4 10.6 114 46-230 17-134 (183)
115 2p5s_A RAS and EF-hand domain 98.9 2.3E-09 7.8E-14 107.6 8.7 118 46-229 27-147 (199)
116 2fu5_C RAS-related protein RAB 98.9 8.8E-10 3E-14 108.6 5.4 69 148-230 57-128 (183)
117 2atv_A RERG, RAS-like estrogen 98.9 3.5E-09 1.2E-13 105.9 9.9 27 46-72 27-53 (196)
118 3reg_A RHO-like small GTPase; 98.9 3.1E-09 1E-13 106.1 9.3 117 46-230 22-142 (194)
119 2q3h_A RAS homolog gene family 98.9 4.3E-09 1.5E-13 105.5 10.2 117 46-230 19-139 (201)
120 2fh5_B SR-beta, signal recogni 98.9 7.3E-09 2.5E-13 105.0 11.8 118 46-231 6-131 (214)
121 1mh1_A RAC1; GTP-binding, GTPa 98.9 3.4E-09 1.1E-13 104.2 8.9 68 149-231 54-125 (186)
122 2x77_A ADP-ribosylation factor 98.9 3.3E-09 1.1E-13 105.2 8.7 114 46-230 21-138 (189)
123 2fv8_A H6, RHO-related GTP-bin 98.9 3.2E-09 1.1E-13 107.4 8.7 25 48-72 26-50 (207)
124 2j1l_A RHO-related GTP-binding 98.9 7.3E-09 2.5E-13 105.5 11.4 117 47-231 34-154 (214)
125 4a9a_A Ribosome-interacting GT 98.9 2.4E-09 8E-14 118.7 8.0 122 46-228 71-195 (376)
126 1f6b_A SAR1; gtpases, N-termin 98.9 1E-08 3.4E-13 103.2 11.8 114 45-229 23-140 (198)
127 1fzq_A ADP-ribosylation factor 98.9 2.2E-08 7.4E-13 99.1 13.9 115 45-230 14-132 (181)
128 3llu_A RAS-related GTP-binding 98.9 1.1E-08 3.7E-13 102.5 11.7 119 46-230 19-144 (196)
129 2gf0_A GTP-binding protein DI- 98.8 3.1E-09 1E-13 106.0 7.2 27 46-72 7-33 (199)
130 3ihw_A Centg3; RAS, centaurin, 98.8 1.7E-08 5.7E-13 100.4 12.6 27 46-72 19-45 (184)
131 1m2o_B GTP-binding protein SAR 98.8 1.3E-08 4.3E-13 101.7 11.7 113 46-229 22-138 (190)
132 3cpj_B GTP-binding protein YPT 98.8 1.6E-09 5.5E-14 111.0 4.8 118 46-229 12-132 (223)
133 3c5c_A RAS-like protein 12; GD 98.8 5.6E-09 1.9E-13 103.9 7.4 26 47-72 21-46 (187)
134 3l0i_B RAS-related protein RAB 98.8 2.5E-10 8.7E-15 114.7 -2.5 119 46-230 32-153 (199)
135 1nrj_B SR-beta, signal recogni 98.8 1.7E-08 5.9E-13 102.5 10.9 28 45-72 10-37 (218)
136 3dpu_A RAB family protein; roc 98.8 3.1E-08 1E-12 115.4 13.6 68 148-230 98-165 (535)
137 2j0v_A RAC-like GTP-binding pr 98.8 7.4E-09 2.5E-13 104.8 7.3 117 46-230 8-128 (212)
138 3gj0_A GTP-binding nuclear pro 98.8 4.6E-09 1.6E-13 107.3 5.1 67 149-230 65-134 (221)
139 3cbq_A GTP-binding protein REM 98.7 1.8E-08 6.2E-13 101.1 9.4 26 46-71 22-47 (195)
140 3bwd_D RAC-like GTP-binding pr 98.7 6E-09 2.1E-13 102.2 5.5 67 149-230 57-127 (182)
141 1gwn_A RHO-related GTP-binding 98.7 2.6E-08 9E-13 100.9 9.9 26 47-72 28-53 (205)
142 3q3j_B RHO-related GTP-binding 98.7 1.8E-08 6.3E-13 102.7 8.4 118 45-230 25-146 (214)
143 2qag_A Septin-2, protein NEDD5 98.7 2E-08 6.7E-13 111.2 9.0 81 148-230 95-189 (361)
144 3sjy_A Translation initiation 98.7 5.6E-08 1.9E-12 109.1 12.8 66 149-230 76-144 (403)
145 3lvq_E ARF-GAP with SH3 domain 98.7 4E-08 1.4E-12 113.3 11.8 113 47-230 322-438 (497)
146 3o47_A ADP-ribosylation factor 98.7 4E-08 1.4E-12 107.4 11.0 111 49-230 167-281 (329)
147 3j2k_7 ERF3, eukaryotic polype 98.7 5.8E-08 2E-12 110.3 11.8 146 46-229 16-169 (439)
148 3p26_A Elongation factor 1 alp 98.7 3.5E-08 1.2E-12 113.5 9.8 146 46-230 32-186 (483)
149 1wb1_A Translation elongation 98.7 1E-07 3.4E-12 109.6 13.5 65 148-229 73-139 (482)
150 3th5_A RAS-related C3 botulinu 98.1 2.5E-09 8.5E-14 107.7 0.0 68 149-230 79-149 (204)
151 3izq_1 HBS1P, elongation facto 98.6 9.7E-08 3.3E-12 112.7 12.1 146 46-229 166-319 (611)
152 1wxq_A GTP-binding protein; st 98.6 2.2E-08 7.5E-13 112.2 6.3 38 49-86 2-39 (397)
153 3tr5_A RF-3, peptide chain rel 98.6 2.8E-08 9.7E-13 115.2 7.3 68 148-230 82-149 (528)
154 3r7w_A Gtpase1, GTP-binding pr 98.6 7E-08 2.4E-12 104.4 9.9 73 148-229 52-129 (307)
155 1m7b_A RND3/RHOE small GTP-bin 98.6 3.4E-08 1.2E-12 97.6 6.8 26 47-72 7-32 (184)
156 4dkx_A RAS-related protein RAB 98.6 5.6E-08 1.9E-12 99.8 8.3 68 148-229 62-132 (216)
157 2qag_B Septin-6, protein NEDD5 98.6 6.9E-08 2.3E-12 108.4 9.3 135 46-231 41-192 (427)
158 2wkq_A NPH1-1, RAS-related C3 98.6 1.4E-07 4.9E-12 101.8 11.4 117 46-230 154-274 (332)
159 2ywe_A GTP-binding protein LEP 98.6 2E-07 6.9E-12 109.2 12.9 68 148-230 73-140 (600)
160 3cb4_D GTP-binding protein LEP 98.6 1.7E-07 5.9E-12 110.0 11.7 68 148-230 71-138 (599)
161 1pui_A ENGB, probable GTP-bind 98.6 2.5E-07 8.5E-12 93.2 11.1 79 149-231 73-153 (210)
162 2qag_C Septin-7; cell cycle, c 98.6 3.6E-07 1.2E-11 102.8 13.4 81 148-230 88-182 (418)
163 3izy_P Translation initiation 98.5 1.1E-08 3.8E-13 118.4 0.8 117 46-230 3-119 (537)
164 1kk1_A EIF2gamma; initiation o 98.5 6.9E-07 2.4E-11 100.4 15.4 66 149-230 84-152 (410)
165 2g3y_A GTP-binding protein GEM 98.5 2.9E-07 1E-11 94.0 10.9 26 46-71 36-61 (211)
166 1s0u_A EIF-2-gamma, translatio 98.5 8.2E-07 2.8E-11 99.8 15.3 67 148-230 81-150 (408)
167 2h5e_A Peptide chain release f 98.5 3.1E-07 1E-11 106.6 10.9 69 148-231 82-150 (529)
168 1zun_B Sulfate adenylate trans 98.5 5.4E-07 1.9E-11 102.1 12.7 67 148-230 104-172 (434)
169 2elf_A Protein translation elo 98.5 7.9E-07 2.7E-11 98.6 13.6 22 47-68 21-42 (370)
170 2c78_A Elongation factor TU-A; 98.5 3E-07 1E-11 103.2 9.6 67 148-229 75-142 (405)
171 2zej_A Dardarin, leucine-rich 98.4 3.6E-07 1.2E-11 90.3 8.4 23 48-70 3-25 (184)
172 2f9l_A RAB11B, member RAS onco 98.4 6E-07 2E-11 89.9 9.6 26 47-72 5-30 (199)
173 2xex_A Elongation factor G; GT 98.4 2.7E-07 9.2E-12 110.6 8.1 68 148-230 75-142 (693)
174 1g7s_A Translation initiation 98.4 8.9E-08 3E-12 112.4 3.7 66 149-229 71-136 (594)
175 2rdo_7 EF-G, elongation factor 98.4 1.1E-06 3.8E-11 105.4 12.6 68 148-230 82-149 (704)
176 1zo1_I IF2, translation initia 98.4 4.6E-08 1.6E-12 112.3 0.5 27 46-72 3-29 (501)
177 1f60_A Elongation factor EEF1A 98.4 6.3E-07 2.2E-11 102.3 9.7 143 46-229 6-159 (458)
178 1d2e_A Elongation factor TU (E 98.4 9.1E-07 3.1E-11 99.1 10.3 67 148-229 66-133 (397)
179 2www_A Methylmalonic aciduria 98.4 3E-06 1E-10 93.2 14.2 26 45-70 72-97 (349)
180 3ec1_A YQEH GTPase; atnos1, at 98.3 1.1E-07 3.9E-12 105.4 2.2 40 22-70 146-185 (369)
181 3p32_A Probable GTPase RV1496/ 98.3 1.5E-06 5.1E-11 95.9 11.1 24 46-69 78-101 (355)
182 2cjw_A GTP-binding protein GEM 98.3 9.6E-07 3.3E-11 88.2 8.3 24 47-70 6-29 (192)
183 3sop_A Neuronal-specific septi 98.3 9.9E-07 3.4E-11 93.6 8.8 82 148-231 60-156 (270)
184 2qnr_A Septin-2, protein NEDD5 98.3 3.7E-06 1.3E-10 90.6 12.5 81 148-230 76-170 (301)
185 3h2y_A GTPase family protein; 98.3 3.3E-07 1.1E-11 101.6 4.3 41 22-71 144-184 (368)
186 1dar_A EF-G, elongation factor 98.3 1.2E-06 4.3E-11 104.8 9.3 68 148-230 77-144 (691)
187 1jny_A EF-1-alpha, elongation 98.3 9.4E-07 3.2E-11 100.2 7.4 68 148-230 84-159 (435)
188 1oix_A RAS-related protein RAB 98.2 1.4E-06 4.6E-11 87.0 7.2 26 47-72 29-54 (191)
189 1r5b_A Eukaryotic peptide chai 98.2 2.6E-07 8.7E-12 105.8 1.8 24 46-69 42-65 (467)
190 3mca_A HBS1, elongation factor 98.2 5E-08 1.7E-12 114.7 -4.6 24 47-70 177-200 (592)
191 1n0u_A EF-2, elongation factor 98.2 8.9E-07 3E-11 108.2 6.0 66 148-228 98-163 (842)
192 3c5h_A Glucocorticoid receptor 98.2 1.1E-06 3.8E-11 92.2 5.7 25 46-70 18-51 (255)
193 1udx_A The GTP-binding protein 98.2 7.7E-06 2.6E-10 91.9 12.2 25 47-71 157-181 (416)
194 3avx_A Elongation factor TS, e 98.2 3.9E-06 1.3E-10 103.6 10.4 65 148-229 359-426 (1289)
195 1jal_A YCHF protein; nucleotid 98.1 1.6E-06 5.5E-11 95.5 6.1 37 48-84 3-39 (363)
196 2j37_W Signal recognition part 98.1 1.4E-05 4.7E-10 91.9 13.4 77 148-236 184-261 (504)
197 2dy1_A Elongation factor G; tr 98.1 8.6E-06 2.9E-10 97.1 11.4 132 46-228 8-139 (665)
198 3dm5_A SRP54, signal recogniti 98.1 4.6E-05 1.6E-09 85.9 16.5 81 148-239 183-263 (443)
199 1yrb_A ATP(GTP)binding protein 98.1 4.8E-05 1.6E-09 79.3 15.1 29 45-73 12-45 (262)
200 3vqt_A RF-3, peptide chain rel 98.1 9E-06 3.1E-10 94.7 10.4 68 148-230 100-167 (548)
201 1f5n_A Interferon-induced guan 98.1 4.7E-06 1.6E-10 97.3 7.9 28 45-72 36-63 (592)
202 2p67_A LAO/AO transport system 98.0 5E-06 1.7E-10 91.1 6.9 25 46-70 55-79 (341)
203 2ohf_A Protein OLA1, GTP-bindi 98.0 3.8E-06 1.3E-10 93.4 5.2 38 47-84 22-59 (396)
204 2qm8_A GTPase/ATPase; G protei 97.9 0.00015 5.3E-09 79.1 16.7 25 46-70 54-78 (337)
205 1puj_A YLQF, conserved hypothe 97.9 2.7E-05 9.1E-10 83.1 9.8 30 46-75 119-148 (282)
206 1tq4_A IIGP1, interferon-induc 97.9 2.9E-05 1E-09 87.0 10.2 120 47-228 69-188 (413)
207 2dby_A GTP-binding protein; GD 97.9 1.3E-05 4.3E-10 88.7 6.7 38 48-85 2-39 (368)
208 3r7w_B Gtpase2, GTP-binding pr 97.9 3.4E-05 1.2E-09 83.6 9.5 71 148-230 46-121 (331)
209 3j25_A Tetracycline resistance 97.8 1E-05 3.4E-10 96.1 5.4 68 148-230 67-134 (638)
210 4fn5_A EF-G 1, elongation fact 97.8 2.6E-05 8.9E-10 93.7 8.7 135 47-229 13-151 (709)
211 2wsm_A Hydrogenase expression/ 97.8 3.3E-05 1.1E-09 78.3 8.0 25 46-70 29-53 (221)
212 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 3.9E-05 1.3E-09 85.4 6.6 38 47-84 20-58 (392)
213 2v3c_C SRP54, signal recogniti 97.7 7.2E-05 2.4E-09 84.5 8.7 78 148-237 181-260 (432)
214 3kl4_A SRP54, signal recogniti 97.6 5.8E-05 2E-09 85.0 6.3 82 148-238 180-261 (433)
215 2px0_A Flagellar biosynthesis 97.6 0.00049 1.7E-08 73.8 12.9 97 148-259 183-281 (296)
216 2yhs_A FTSY, cell division pro 97.5 0.00033 1.1E-08 79.8 11.3 94 149-253 377-474 (503)
217 2xxa_A Signal recognition part 97.4 0.00082 2.8E-08 75.8 13.1 78 148-236 184-261 (433)
218 3cnl_A YLQF, putative uncharac 97.4 9.1E-05 3.1E-09 78.0 4.5 25 48-72 100-124 (262)
219 2hf9_A Probable hydrogenase ni 97.4 0.00048 1.6E-08 69.8 9.5 26 46-71 37-62 (226)
220 1rj9_A FTSY, signal recognitio 97.3 0.00098 3.4E-08 71.7 10.8 100 149-255 186-285 (304)
221 1j8m_F SRP54, signal recogniti 97.3 0.0011 3.6E-08 71.2 11.0 82 148-238 181-262 (297)
222 1vma_A Cell division protein F 97.2 0.00019 6.5E-09 77.3 4.9 98 148-255 187-287 (306)
223 3e70_C DPA, signal recognition 97.1 0.001 3.6E-08 72.2 9.4 79 149-238 213-291 (328)
224 3q5d_A Atlastin-1; G protein, 97.1 0.00042 1.4E-08 78.3 6.0 25 46-70 66-90 (447)
225 1zu4_A FTSY; GTPase, signal re 96.9 0.013 4.4E-07 63.4 15.2 99 148-256 192-293 (320)
226 2ffh_A Protein (FFH); SRP54, s 96.7 0.0033 1.1E-07 70.6 9.1 80 148-238 181-260 (425)
227 2og2_A Putative signal recogni 96.4 0.017 5.9E-07 63.4 12.0 85 149-238 242-326 (359)
228 3b9q_A Chloroplast SRP recepto 96.2 0.021 7.2E-07 61.2 11.0 85 149-238 185-269 (302)
229 1ls1_A Signal recognition part 96.1 0.02 7E-07 61.0 10.3 94 148-254 181-274 (295)
230 4ido_A Atlastin-1; GTPase, GTP 94.6 0.056 1.9E-06 60.8 7.8 22 47-68 67-88 (457)
231 1puj_A YLQF, conserved hypothe 93.2 0.34 1.2E-05 51.1 10.3 54 173-230 12-65 (282)
232 3ney_A 55 kDa erythrocyte memb 92.8 0.042 1.4E-06 55.1 2.4 24 47-70 19-42 (197)
233 1lvg_A Guanylate kinase, GMP k 92.5 0.05 1.7E-06 54.2 2.5 22 49-70 6-27 (198)
234 1kgd_A CASK, peripheral plasma 92.4 0.053 1.8E-06 53.0 2.5 23 48-70 6-28 (180)
235 1znw_A Guanylate kinase, GMP k 92.4 0.052 1.8E-06 54.2 2.5 22 49-70 22-43 (207)
236 2rcn_A Probable GTPase ENGC; Y 92.2 0.089 3E-06 57.6 4.2 23 49-71 217-239 (358)
237 1ex7_A Guanylate kinase; subst 92.1 0.054 1.8E-06 53.8 2.2 35 50-84 4-40 (186)
238 1ye8_A Protein THEP1, hypothet 92.1 0.065 2.2E-06 52.6 2.7 22 49-70 2-23 (178)
239 2gza_A Type IV secretion syste 92.0 0.084 2.9E-06 57.9 3.7 28 49-78 177-204 (361)
240 3tif_A Uncharacterized ABC tra 91.9 0.074 2.5E-06 54.6 3.0 23 49-71 33-55 (235)
241 2pcj_A ABC transporter, lipopr 91.7 0.079 2.7E-06 54.0 3.0 23 49-71 32-54 (224)
242 1zp6_A Hypothetical protein AT 91.7 0.091 3.1E-06 51.3 3.3 22 49-70 11-32 (191)
243 3tr0_A Guanylate kinase, GMP k 91.6 0.071 2.4E-06 52.6 2.4 22 49-70 9-30 (205)
244 1s96_A Guanylate kinase, GMP k 91.6 0.071 2.4E-06 54.2 2.4 23 49-71 18-40 (219)
245 1u0l_A Probable GTPase ENGC; p 91.6 0.1 3.4E-06 55.7 3.7 24 48-71 170-193 (301)
246 4g1u_C Hemin import ATP-bindin 91.5 0.1 3.5E-06 54.7 3.6 22 49-70 39-60 (266)
247 3tau_A Guanylate kinase, GMP k 91.5 0.091 3.1E-06 52.6 3.1 22 49-70 10-31 (208)
248 1t9h_A YLOQ, probable GTPase E 91.4 0.04 1.4E-06 59.1 0.4 24 48-71 174-197 (307)
249 2pt7_A CAG-ALFA; ATPase, prote 91.4 0.081 2.8E-06 57.3 2.8 28 49-78 173-200 (330)
250 3a00_A Guanylate kinase, GMP k 91.4 0.076 2.6E-06 52.1 2.4 21 50-70 4-24 (186)
251 1z6g_A Guanylate kinase; struc 91.4 0.078 2.7E-06 53.6 2.5 22 49-70 25-46 (218)
252 1mv5_A LMRA, multidrug resista 91.3 0.11 3.9E-06 53.5 3.7 23 49-71 30-52 (243)
253 2oap_1 GSPE-2, type II secreti 91.3 0.091 3.1E-06 60.4 3.3 30 50-81 263-292 (511)
254 3c8u_A Fructokinase; YP_612366 91.3 0.072 2.5E-06 53.3 2.1 22 49-70 24-45 (208)
255 1sgw_A Putative ABC transporte 91.3 0.095 3.3E-06 53.1 3.0 22 49-70 37-58 (214)
256 2onk_A Molybdate/tungstate ABC 91.2 0.1 3.5E-06 53.8 3.2 24 48-71 25-48 (240)
257 2cbz_A Multidrug resistance-as 91.1 0.1 3.5E-06 53.6 3.2 23 49-71 33-55 (237)
258 2pze_A Cystic fibrosis transme 91.0 0.11 3.6E-06 53.2 3.0 22 49-70 36-57 (229)
259 1g6h_A High-affinity branched- 90.9 0.11 3.6E-06 54.2 3.0 23 49-71 35-57 (257)
260 1b0u_A Histidine permease; ABC 90.9 0.11 3.6E-06 54.4 3.0 23 49-71 34-56 (262)
261 3gfo_A Cobalt import ATP-bindi 90.9 0.11 3.6E-06 54.9 3.0 22 49-70 36-57 (275)
262 1np6_A Molybdopterin-guanine d 90.8 0.11 3.9E-06 50.8 2.9 25 46-70 5-29 (174)
263 2ff7_A Alpha-hemolysin translo 90.8 0.11 3.8E-06 53.8 3.0 23 49-71 37-59 (247)
264 1ji0_A ABC transporter; ATP bi 90.7 0.11 3.9E-06 53.4 3.0 23 49-71 34-56 (240)
265 2qi9_C Vitamin B12 import ATP- 90.7 0.12 4E-06 53.7 3.0 23 49-71 28-50 (249)
266 2d2e_A SUFC protein; ABC-ATPas 90.6 0.12 4.3E-06 53.4 3.2 22 49-70 31-52 (250)
267 2olj_A Amino acid ABC transpor 90.6 0.12 4.1E-06 54.1 3.0 23 49-71 52-74 (263)
268 1vpl_A ABC transporter, ATP-bi 90.5 0.12 4.1E-06 53.8 3.0 23 49-71 43-65 (256)
269 1htw_A HI0065; nucleotide-bind 90.5 0.11 3.7E-06 50.0 2.5 22 49-70 35-56 (158)
270 3asz_A Uridine kinase; cytidin 90.4 0.11 3.7E-06 51.7 2.5 22 49-70 8-29 (211)
271 2ghi_A Transport protein; mult 90.4 0.13 4.3E-06 53.8 3.0 23 49-71 48-70 (260)
272 2zu0_C Probable ATP-dependent 90.4 0.13 4.5E-06 53.8 3.2 22 49-70 48-69 (267)
273 2ixe_A Antigen peptide transpo 90.3 0.13 4.4E-06 54.0 3.0 22 49-70 47-68 (271)
274 2nq2_C Hypothetical ABC transp 90.2 0.13 4.5E-06 53.4 3.0 31 49-81 33-63 (253)
275 2yz2_A Putative ABC transporte 90.2 0.13 4.6E-06 53.7 3.0 23 49-71 35-57 (266)
276 2eyu_A Twitching motility prot 90.1 0.12 4E-06 54.1 2.5 22 49-70 27-48 (261)
277 2ihy_A ABC transporter, ATP-bi 90.1 0.14 4.7E-06 54.1 3.0 23 49-71 49-71 (279)
278 4gp7_A Metallophosphoesterase; 90.0 0.14 4.9E-06 49.5 2.9 21 49-69 11-31 (171)
279 2qor_A Guanylate kinase; phosp 90.0 0.098 3.4E-06 52.0 1.7 25 46-70 11-35 (204)
280 3kta_A Chromosome segregation 89.8 0.13 4.5E-06 49.8 2.5 23 48-70 27-49 (182)
281 2f1r_A Molybdopterin-guanine d 89.7 0.082 2.8E-06 51.6 0.8 23 48-70 3-25 (171)
282 3b85_A Phosphate starvation-in 89.7 0.11 3.8E-06 52.3 1.8 22 49-70 24-45 (208)
283 2j41_A Guanylate kinase; GMP, 89.4 0.15 5.3E-06 50.1 2.6 22 49-70 8-29 (207)
284 2v9p_A Replication protein E1; 89.3 0.15 5.2E-06 54.5 2.6 22 49-70 128-149 (305)
285 2pjz_A Hypothetical protein ST 89.2 0.18 6E-06 52.8 3.0 25 49-75 32-56 (263)
286 1kag_A SKI, shikimate kinase I 89.2 0.16 5.4E-06 48.6 2.4 22 49-70 6-27 (173)
287 2yv5_A YJEQ protein; hydrolase 89.1 0.26 8.7E-06 52.6 4.2 22 48-70 166-187 (302)
288 2bbs_A Cystic fibrosis transme 89.0 0.19 6.4E-06 53.4 3.0 23 49-71 66-88 (290)
289 3nh6_A ATP-binding cassette SU 88.9 0.14 4.7E-06 54.9 2.0 22 49-70 82-103 (306)
290 4a74_A DNA repair and recombin 88.8 0.24 8.2E-06 49.5 3.6 30 49-78 27-56 (231)
291 2bdt_A BH3686; alpha-beta prot 88.8 0.18 6E-06 49.3 2.5 21 49-69 4-24 (189)
292 4eun_A Thermoresistant glucoki 88.4 0.19 6.4E-06 49.8 2.4 23 48-70 30-52 (200)
293 3lnc_A Guanylate kinase, GMP k 88.4 0.15 5.2E-06 51.6 1.8 22 49-70 29-51 (231)
294 1odf_A YGR205W, hypothetical 3 88.4 0.42 1.4E-05 50.6 5.3 24 47-70 31-54 (290)
295 3jvv_A Twitching mobility prot 88.4 0.18 6.1E-06 55.2 2.4 22 49-70 125-146 (356)
296 3aez_A Pantothenate kinase; tr 88.2 0.19 6.4E-06 54.0 2.4 26 45-70 87-113 (312)
297 2bbw_A Adenylate kinase 4, AK4 88.2 0.27 9.4E-06 50.3 3.6 24 48-71 28-54 (246)
298 2i3b_A HCR-ntpase, human cance 88.0 0.21 7.1E-06 49.5 2.4 22 49-70 3-24 (189)
299 3fvq_A Fe(3+) IONS import ATP- 87.9 0.25 8.5E-06 54.1 3.2 23 49-71 32-54 (359)
300 1z47_A CYSA, putative ABC-tran 87.7 0.26 8.8E-06 53.9 3.2 23 49-71 43-65 (355)
301 3tui_C Methionine import ATP-b 87.7 0.26 8.8E-06 54.0 3.2 23 49-71 56-78 (366)
302 1rz3_A Hypothetical protein rb 87.6 0.39 1.3E-05 47.6 4.2 22 49-70 24-45 (201)
303 1knq_A Gluconate kinase; ALFA/ 87.5 0.24 8.2E-06 47.6 2.4 22 49-70 10-31 (175)
304 1p9r_A General secretion pathw 87.4 0.19 6.4E-06 56.2 1.9 22 49-70 169-190 (418)
305 2yyz_A Sugar ABC transporter, 87.3 0.28 9.6E-06 53.7 3.2 23 49-71 31-53 (359)
306 2it1_A 362AA long hypothetical 87.3 0.28 9.6E-06 53.7 3.2 23 49-71 31-53 (362)
307 3lw7_A Adenylate kinase relate 87.2 0.32 1.1E-05 45.9 3.2 20 48-67 2-21 (179)
308 3rlf_A Maltose/maltodextrin im 87.2 0.29 9.9E-06 54.0 3.2 23 49-71 31-53 (381)
309 1g29_1 MALK, maltose transport 87.2 0.29 9.9E-06 53.8 3.2 23 49-71 31-53 (372)
310 2jeo_A Uridine-cytidine kinase 87.0 0.25 8.6E-06 50.6 2.5 22 49-70 27-48 (245)
311 3ec2_A DNA replication protein 86.9 0.37 1.3E-05 46.6 3.5 44 24-70 18-61 (180)
312 1f2t_A RAD50 ABC-ATPase; DNA d 86.8 0.34 1.1E-05 45.9 3.0 21 48-68 24-44 (149)
313 1v43_A Sugar-binding transport 86.8 0.31 1.1E-05 53.6 3.2 23 49-71 39-61 (372)
314 1xjc_A MOBB protein homolog; s 86.8 0.39 1.3E-05 46.7 3.5 24 47-70 4-27 (169)
315 3uie_A Adenylyl-sulfate kinase 86.7 0.28 9.4E-06 48.5 2.5 23 48-70 26-48 (200)
316 3kb2_A SPBC2 prophage-derived 86.7 0.38 1.3E-05 45.7 3.3 23 48-70 2-24 (173)
317 1cke_A CK, MSSA, protein (cyti 86.6 0.31 1E-05 48.9 2.8 23 48-70 6-28 (227)
318 1lw7_A Transcriptional regulat 86.6 0.24 8.1E-06 54.1 2.1 23 48-70 171-193 (365)
319 2ewv_A Twitching motility prot 86.4 0.27 9.2E-06 54.0 2.4 22 49-70 138-159 (372)
320 1nij_A Hypothetical protein YJ 86.4 0.22 7.5E-06 53.5 1.6 25 47-71 4-28 (318)
321 1u0l_A Probable GTPase ENGC; p 86.1 0.38 1.3E-05 51.2 3.3 66 149-230 64-130 (301)
322 1sq5_A Pantothenate kinase; P- 86.1 0.29 1E-05 52.2 2.5 22 49-70 82-103 (308)
323 2qt1_A Nicotinamide riboside k 85.9 0.41 1.4E-05 47.4 3.3 27 44-70 17-44 (207)
324 2if2_A Dephospho-COA kinase; a 85.9 0.34 1.2E-05 47.7 2.7 21 49-69 3-23 (204)
325 3gd7_A Fusion complex of cysti 85.9 0.37 1.3E-05 53.3 3.2 23 49-71 49-71 (390)
326 1zcb_A G alpha I/13; GTP-bindi 85.8 0.27 9.3E-06 53.9 2.1 69 148-229 201-282 (362)
327 3d31_A Sulfate/molybdate ABC t 85.8 0.26 8.9E-06 53.7 1.9 23 49-71 28-50 (348)
328 1jjv_A Dephospho-COA kinase; P 85.8 0.41 1.4E-05 47.3 3.2 22 49-70 4-25 (206)
329 2x8a_A Nuclear valosin-contain 85.7 0.48 1.6E-05 49.7 3.8 34 34-70 34-67 (274)
330 1ixz_A ATP-dependent metallopr 85.2 0.62 2.1E-05 47.6 4.4 22 49-70 51-72 (254)
331 4e22_A Cytidylate kinase; P-lo 84.9 0.53 1.8E-05 48.5 3.7 24 48-71 28-54 (252)
332 2npi_A Protein CLP1; CLP1-PCF1 84.9 0.34 1.2E-05 54.8 2.4 26 46-71 137-162 (460)
333 2jaq_A Deoxyguanosine kinase; 84.9 0.51 1.7E-05 46.1 3.4 22 49-70 2-23 (205)
334 4fid_A G protein alpha subunit 84.8 0.79 2.7E-05 49.7 5.1 70 147-229 160-242 (340)
335 3t61_A Gluconokinase; PSI-biol 84.8 0.39 1.3E-05 47.4 2.4 23 48-70 19-41 (202)
336 3qf7_A RAD50; ABC-ATPase, ATPa 84.7 0.48 1.7E-05 51.8 3.4 23 46-68 22-44 (365)
337 2kjq_A DNAA-related protein; s 84.7 0.31 1.1E-05 46.2 1.6 25 46-70 35-59 (149)
338 1oxx_K GLCV, glucose, ABC tran 84.7 0.26 8.9E-06 53.8 1.2 23 49-71 33-55 (353)
339 2ehv_A Hypothetical protein PH 84.5 0.47 1.6E-05 48.0 3.0 21 49-69 32-52 (251)
340 2vp4_A Deoxynucleoside kinase; 84.5 0.33 1.1E-05 49.3 1.8 22 49-70 22-43 (230)
341 1ly1_A Polynucleotide kinase; 84.1 0.53 1.8E-05 44.9 3.0 21 49-69 4-24 (181)
342 1cip_A Protein (guanine nucleo 84.1 0.23 7.8E-06 54.3 0.4 70 147-229 192-274 (353)
343 3thx_A DNA mismatch repair pro 84.1 3.2 0.00011 51.0 10.5 19 49-67 664-682 (934)
344 1qhx_A CPT, protein (chloramph 83.4 0.59 2E-05 44.8 3.0 22 49-70 5-26 (178)
345 1iy2_A ATP-dependent metallopr 83.4 0.84 2.9E-05 47.5 4.5 22 49-70 75-96 (278)
346 1nks_A Adenylate kinase; therm 83.3 0.59 2E-05 45.1 3.0 21 49-69 3-23 (194)
347 3tqc_A Pantothenate kinase; bi 83.2 0.47 1.6E-05 51.0 2.5 22 49-70 94-115 (321)
348 1yqt_A RNAse L inhibitor; ATP- 83.1 0.61 2.1E-05 53.8 3.5 22 49-70 49-70 (538)
349 3ec1_A YQEH GTPase; atnos1, at 83.1 2.1 7.2E-05 46.8 7.7 55 173-231 60-114 (369)
350 3h2y_A GTPase family protein; 82.9 2.4 8.3E-05 46.3 8.1 56 172-231 57-112 (368)
351 1kht_A Adenylate kinase; phosp 82.8 0.63 2.2E-05 44.9 3.0 21 49-69 5-25 (192)
352 3vaa_A Shikimate kinase, SK; s 82.7 0.71 2.4E-05 45.4 3.4 22 48-69 26-47 (199)
353 3trf_A Shikimate kinase, SK; a 82.5 0.75 2.6E-05 44.4 3.4 22 47-68 5-26 (185)
354 1y63_A LMAJ004144AAA protein; 82.2 0.78 2.7E-05 44.6 3.4 24 47-70 10-33 (184)
355 4b4t_K 26S protease regulatory 82.2 4.9 0.00017 44.8 10.3 33 34-70 196-229 (428)
356 2rhm_A Putative kinase; P-loop 82.0 0.71 2.4E-05 44.7 3.0 21 49-69 7-27 (193)
357 3ohm_A Guanine nucleotide-bind 82.0 0.69 2.4E-05 49.9 3.2 69 148-229 167-248 (327)
358 1yqt_A RNAse L inhibitor; ATP- 81.9 0.9 3.1E-05 52.4 4.3 30 49-80 314-343 (538)
359 3ozx_A RNAse L inhibitor; ATP 81.9 0.65 2.2E-05 53.6 3.1 22 49-70 27-48 (538)
360 3qks_A DNA double-strand break 81.8 0.81 2.8E-05 45.6 3.4 23 46-68 22-44 (203)
361 2yv5_A YJEQ protein; hydrolase 81.7 0.94 3.2E-05 48.1 4.1 53 177-230 72-125 (302)
362 3b60_A Lipid A export ATP-bind 81.7 0.68 2.3E-05 53.9 3.2 22 49-70 371-392 (582)
363 3ozx_A RNAse L inhibitor; ATP 81.5 0.8 2.7E-05 52.8 3.7 23 49-71 296-318 (538)
364 3euj_A Chromosome partition pr 81.5 0.59 2E-05 53.1 2.5 23 48-70 30-52 (483)
365 4b4t_L 26S protease subunit RP 81.4 4.6 0.00016 45.2 9.7 33 34-70 205-238 (437)
366 3b5x_A Lipid A export ATP-bind 81.3 0.72 2.4E-05 53.7 3.2 22 49-70 371-392 (582)
367 3j16_B RLI1P; ribosome recycli 81.3 0.71 2.4E-05 54.1 3.2 23 49-71 105-127 (608)
368 3cm0_A Adenylate kinase; ATP-b 81.3 0.78 2.7E-05 44.2 3.0 20 49-68 6-25 (186)
369 2pez_A Bifunctional 3'-phospho 81.2 0.67 2.3E-05 44.7 2.5 22 49-70 7-28 (179)
370 2v54_A DTMP kinase, thymidylat 81.2 0.79 2.7E-05 44.9 3.0 23 48-70 5-27 (204)
371 1via_A Shikimate kinase; struc 81.1 0.79 2.7E-05 44.0 2.9 23 48-70 5-27 (175)
372 2iyv_A Shikimate kinase, SK; t 80.8 0.78 2.7E-05 44.3 2.8 21 48-68 3-23 (184)
373 1gtv_A TMK, thymidylate kinase 80.8 0.43 1.5E-05 47.2 1.0 22 49-70 2-23 (214)
374 3fb4_A Adenylate kinase; psych 80.8 0.88 3E-05 45.1 3.3 20 49-68 2-21 (216)
375 2plr_A DTMP kinase, probable t 80.7 0.83 2.8E-05 44.8 3.0 23 48-70 5-27 (213)
376 2w0m_A SSO2452; RECA, SSPF, un 80.7 0.69 2.4E-05 46.0 2.5 22 49-70 25-46 (235)
377 3bk7_A ABC transporter ATP-bin 80.6 0.79 2.7E-05 53.7 3.2 23 49-71 119-141 (607)
378 3bk7_A ABC transporter ATP-bin 80.6 1 3.4E-05 52.8 4.1 30 49-80 384-413 (607)
379 2z0h_A DTMP kinase, thymidylat 80.6 0.85 2.9E-05 44.3 3.1 21 49-69 2-22 (197)
380 2yl4_A ATP-binding cassette SU 80.5 0.64 2.2E-05 54.3 2.5 22 49-70 372-393 (595)
381 3qf4_B Uncharacterized ABC tra 80.5 0.67 2.3E-05 54.2 2.6 22 49-70 383-404 (598)
382 2c95_A Adenylate kinase 1; tra 80.2 0.99 3.4E-05 43.8 3.4 22 48-69 10-31 (196)
383 3iij_A Coilin-interacting nucl 80.2 0.88 3E-05 43.8 3.0 22 47-68 11-32 (180)
384 1azs_C GS-alpha; complex (lyas 79.9 0.65 2.2E-05 51.6 2.1 69 148-229 217-298 (402)
385 2wwf_A Thymidilate kinase, put 79.8 0.92 3.2E-05 44.7 3.0 22 48-69 11-32 (212)
386 3dl0_A Adenylate kinase; phosp 79.8 0.99 3.4E-05 44.8 3.3 21 49-69 2-22 (216)
387 1nn5_A Similar to deoxythymidy 79.6 0.94 3.2E-05 44.6 3.0 22 48-69 10-31 (215)
388 1cr0_A DNA primase/helicase; R 79.6 0.76 2.6E-05 48.3 2.5 22 49-70 37-58 (296)
389 1tue_A Replication protein E1; 79.4 1.8 6.1E-05 43.5 4.9 39 23-69 39-80 (212)
390 3qf4_A ABC transporter, ATP-bi 79.3 0.68 2.3E-05 54.0 2.2 22 49-70 371-392 (587)
391 2pbr_A DTMP kinase, thymidylat 79.3 0.99 3.4E-05 43.6 3.0 21 49-69 2-22 (195)
392 2yvu_A Probable adenylyl-sulfa 79.3 1 3.4E-05 43.7 3.0 23 48-70 14-36 (186)
393 4a82_A Cystic fibrosis transme 79.2 0.61 2.1E-05 54.3 1.7 22 49-70 369-390 (578)
394 1e6c_A Shikimate kinase; phosp 78.9 1 3.5E-05 42.7 3.0 22 48-69 3-24 (173)
395 2pt5_A Shikimate kinase, SK; a 78.9 1.1 3.7E-05 42.4 3.1 21 49-69 2-22 (168)
396 3qkt_A DNA double-strand break 78.8 0.97 3.3E-05 48.7 3.0 21 48-68 24-44 (339)
397 1tev_A UMP-CMP kinase; ploop, 78.8 1.1 3.6E-05 43.3 3.0 21 49-69 5-25 (196)
398 3auy_A DNA double-strand break 78.6 0.98 3.3E-05 49.4 3.0 23 46-68 24-46 (371)
399 2bwj_A Adenylate kinase 5; pho 78.6 1.2 4.1E-05 43.3 3.4 22 48-69 13-34 (199)
400 3n70_A Transport activator; si 78.4 2.8 9.6E-05 38.9 5.8 39 28-70 9-47 (145)
401 1vht_A Dephospho-COA kinase; s 78.2 1 3.6E-05 44.7 2.9 21 49-69 6-26 (218)
402 1uf9_A TT1252 protein; P-loop, 78.2 1.1 3.8E-05 43.7 3.0 23 48-70 9-31 (203)
403 1jbk_A CLPB protein; beta barr 78.2 2.4 8.4E-05 40.0 5.5 24 47-70 43-66 (195)
404 1qf9_A UMP/CMP kinase, protein 77.6 1.2 4.1E-05 42.9 3.0 22 48-69 7-28 (194)
405 1zd8_A GTP:AMP phosphotransfer 77.6 1.3 4.4E-05 44.5 3.4 22 48-69 8-29 (227)
406 3j16_B RLI1P; ribosome recycli 77.5 1.1 3.8E-05 52.5 3.2 22 50-71 381-402 (608)
407 4aby_A DNA repair protein RECN 77.4 0.41 1.4E-05 52.9 -0.5 26 45-70 58-83 (415)
408 3ake_A Cytidylate kinase; CMP 77.3 1.4 4.7E-05 43.2 3.4 22 48-69 3-24 (208)
409 2o5v_A DNA replication and rep 77.3 0.97 3.3E-05 49.4 2.5 25 46-70 25-49 (359)
410 1fnn_A CDC6P, cell division co 77.3 1.7 5.8E-05 46.9 4.4 25 46-70 43-67 (389)
411 2obl_A ESCN; ATPase, hydrolase 77.2 1 3.6E-05 48.9 2.7 23 49-71 73-95 (347)
412 4b4t_J 26S protease regulatory 77.1 6.7 0.00023 43.4 9.1 33 34-70 172-205 (405)
413 1qhl_A Protein (cell division 77.0 0.21 7.3E-06 51.0 -2.7 22 50-71 30-51 (227)
414 3nwj_A ATSK2; P loop, shikimat 77.0 1 3.4E-05 46.6 2.4 23 47-69 48-70 (250)
415 1e4v_A Adenylate kinase; trans 76.9 1.4 4.6E-05 43.9 3.3 21 49-69 2-22 (214)
416 1w1w_A Structural maintenance 76.8 1 3.4E-05 50.3 2.5 24 48-71 27-50 (430)
417 1e69_A Chromosome segregation 76.6 1.2 4.2E-05 47.5 3.0 24 47-70 24-47 (322)
418 2cdn_A Adenylate kinase; phosp 76.2 1.4 4.7E-05 43.3 3.0 21 49-69 22-42 (201)
419 2chg_A Replication factor C sm 76.1 2.6 8.8E-05 41.0 5.1 38 27-70 24-61 (226)
420 2dpy_A FLII, flagellum-specifi 76.1 1.1 3.9E-05 50.2 2.7 23 49-71 159-181 (438)
421 1ukz_A Uridylate kinase; trans 76.1 1.4 4.8E-05 43.2 3.1 22 48-69 16-37 (203)
422 1zak_A Adenylate kinase; ATP:A 76.0 1.4 4.7E-05 44.1 3.0 22 48-69 6-27 (222)
423 2xtz_A Guanine nucleotide-bind 76.0 0.53 1.8E-05 51.3 -0.1 70 147-229 182-264 (354)
424 2vli_A Antibiotic resistance p 75.9 1 3.6E-05 43.1 2.0 22 48-69 6-27 (183)
425 3a4m_A L-seryl-tRNA(SEC) kinas 75.8 1.4 4.7E-05 45.6 3.0 22 48-69 5-26 (260)
426 2cvh_A DNA repair and recombin 75.7 1.2 4.1E-05 44.0 2.5 21 49-69 22-42 (220)
427 1gvn_B Zeta; postsegregational 75.6 1.3 4.3E-05 46.8 2.7 45 24-70 11-56 (287)
428 1aky_A Adenylate kinase; ATP:A 75.5 1.6 5.5E-05 43.5 3.4 22 48-69 5-26 (220)
429 1n0w_A DNA repair protein RAD5 75.3 1.2 4.2E-05 44.7 2.5 26 49-74 26-51 (243)
430 1svm_A Large T antigen; AAA+ f 75.2 1.2 4.1E-05 49.0 2.5 22 49-70 171-192 (377)
431 2qen_A Walker-type ATPase; unk 75.0 4.6 0.00016 42.5 7.1 35 28-70 20-54 (350)
432 1m7g_A Adenylylsulfate kinase; 74.9 1.3 4.4E-05 44.0 2.5 23 48-70 26-48 (211)
433 1in4_A RUVB, holliday junction 74.8 1.3 4.3E-05 47.6 2.5 24 47-70 51-74 (334)
434 2ze6_A Isopentenyl transferase 74.8 1.5 5.2E-05 45.1 3.0 22 49-70 3-24 (253)
435 1zuh_A Shikimate kinase; alpha 73.9 1.8 6E-05 41.1 3.0 23 46-68 6-28 (168)
436 3thx_B DNA mismatch repair pro 73.8 12 0.00042 45.7 11.1 22 49-70 675-696 (918)
437 4f4c_A Multidrug resistance pr 73.6 1.5 5.1E-05 56.1 3.1 22 49-70 446-467 (1321)
438 2xb4_A Adenylate kinase; ATP-b 73.4 1.9 6.4E-05 43.3 3.3 21 49-69 2-22 (223)
439 2grj_A Dephospho-COA kinase; T 73.4 1.7 5.9E-05 42.9 2.9 24 46-69 11-34 (192)
440 4f4c_A Multidrug resistance pr 73.3 1.1 3.8E-05 57.3 1.9 22 49-70 1107-1128(1321)
441 3syl_A Protein CBBX; photosynt 72.4 4 0.00014 42.6 5.7 34 37-70 57-90 (309)
442 3exa_A TRNA delta(2)-isopenten 72.3 2.2 7.7E-05 45.6 3.6 23 48-70 4-26 (322)
443 3be4_A Adenylate kinase; malar 72.2 2.2 7.4E-05 42.6 3.4 22 48-69 6-27 (217)
444 4eaq_A DTMP kinase, thymidylat 71.9 2 6.7E-05 43.6 3.0 22 49-70 28-49 (229)
445 2iw3_A Elongation factor 3A; a 71.9 1.1 3.9E-05 55.0 1.4 23 49-71 701-723 (986)
446 3tlx_A Adenylate kinase 2; str 71.9 2.1 7.3E-05 43.6 3.3 22 48-69 30-51 (243)
447 1ak2_A Adenylate kinase isoenz 71.7 2.2 7.7E-05 43.0 3.4 22 48-69 17-38 (233)
448 1nlf_A Regulatory protein REPA 71.5 1.7 5.7E-05 45.2 2.5 21 49-69 32-52 (279)
449 2p65_A Hypothetical protein PF 71.5 3.5 0.00012 38.9 4.5 24 47-70 43-66 (187)
450 2p5t_B PEZT; postsegregational 71.3 1.4 4.8E-05 45.2 1.8 26 45-70 29-55 (253)
451 3a8t_A Adenylate isopentenyltr 70.9 3.2 0.00011 44.8 4.5 37 48-84 41-87 (339)
452 1sxj_E Activator 1 40 kDa subu 70.6 1.6 5.6E-05 46.7 2.2 25 46-70 35-59 (354)
453 1uj2_A Uridine-cytidine kinase 70.5 2.1 7.3E-05 43.7 2.9 22 48-69 23-44 (252)
454 1q3t_A Cytidylate kinase; nucl 70.4 2 6.9E-05 43.4 2.7 23 47-69 16-38 (236)
455 1a5t_A Delta prime, HOLB; zinc 70.4 21 0.00073 37.8 11.0 40 24-69 6-46 (334)
456 2w58_A DNAI, primosome compone 70.2 6.2 0.00021 38.3 6.2 44 25-70 34-77 (202)
457 2f6r_A COA synthase, bifunctio 70.0 2.2 7.4E-05 44.7 2.9 20 49-68 77-96 (281)
458 3g5u_A MCG1178, multidrug resi 69.5 1.9 6.4E-05 55.1 2.7 22 49-70 418-439 (1284)
459 2ius_A DNA translocase FTSK; n 69.4 2.1 7.2E-05 48.9 2.8 23 47-69 167-189 (512)
460 1njg_A DNA polymerase III subu 69.4 6 0.00021 38.7 6.0 38 28-70 31-68 (250)
461 2r62_A Cell division protease 69.3 4.7 0.00016 41.2 5.3 21 50-70 47-67 (268)
462 1lv7_A FTSH; alpha/beta domain 69.1 2.1 7E-05 43.8 2.4 22 49-70 47-68 (257)
463 2ga8_A Hypothetical 39.9 kDa p 68.9 5.5 0.00019 43.3 5.8 42 27-70 6-47 (359)
464 2qz4_A Paraplegin; AAA+, SPG7, 68.8 5.7 0.0002 40.1 5.8 23 48-70 40-62 (262)
465 3bos_A Putative DNA replicatio 68.8 2.9 9.8E-05 41.5 3.4 39 26-70 37-75 (242)
466 3foz_A TRNA delta(2)-isopenten 68.8 2.5 8.5E-05 45.2 3.0 22 48-69 11-32 (316)
467 3r20_A Cytidylate kinase; stru 68.6 2.9 9.9E-05 42.7 3.4 22 48-69 10-31 (233)
468 3cr8_A Sulfate adenylyltranfer 68.6 1.4 4.8E-05 50.9 1.2 22 49-70 371-392 (552)
469 1ltq_A Polynucleotide kinase; 68.6 2.5 8.6E-05 44.2 3.0 21 49-69 4-24 (301)
470 2iw3_A Elongation factor 3A; a 68.4 2.1 7.3E-05 52.6 2.7 22 49-70 463-484 (986)
471 3co5_A Putative two-component 67.6 3.5 0.00012 38.1 3.6 21 50-70 30-50 (143)
472 2fna_A Conserved hypothetical 66.9 4.8 0.00016 42.5 4.9 23 48-70 31-53 (357)
473 1sxj_C Activator 1 40 kDa subu 66.0 2.6 9E-05 45.0 2.6 37 28-70 33-69 (340)
474 3upu_A ATP-dependent DNA helic 65.9 6.1 0.00021 44.3 5.7 44 19-69 24-67 (459)
475 1t9h_A YLOQ, probable GTPase E 65.8 5.3 0.00018 42.5 4.9 50 181-231 83-133 (307)
476 3h4m_A Proteasome-activating n 65.8 5.5 0.00019 41.0 5.0 33 35-70 42-74 (285)
477 3ux8_A Excinuclease ABC, A sub 65.8 1.9 6.4E-05 51.1 1.5 20 49-68 350-369 (670)
478 3g5u_A MCG1178, multidrug resi 64.7 3 0.0001 53.1 3.2 22 49-70 1061-1082(1284)
479 2ocp_A DGK, deoxyguanosine kin 64.7 3.4 0.00012 41.8 3.0 22 49-70 4-25 (241)
480 2qmh_A HPR kinase/phosphorylas 64.3 3.6 0.00012 41.1 3.0 23 48-70 35-57 (205)
481 3m6a_A ATP-dependent protease 64.1 4.7 0.00016 46.4 4.4 27 44-70 105-131 (543)
482 1a7j_A Phosphoribulokinase; tr 63.4 2.3 7.9E-05 44.8 1.5 23 47-69 5-27 (290)
483 1pzn_A RAD51, DNA repair and r 63.0 3.1 0.00011 45.0 2.5 23 49-71 133-155 (349)
484 4ag6_A VIRB4 ATPase, type IV s 62.9 3.6 0.00012 45.0 3.0 25 46-70 34-58 (392)
485 3sr0_A Adenylate kinase; phosp 62.9 4.3 0.00015 40.5 3.3 22 49-70 2-23 (206)
486 3cnl_A YLQF, putative uncharac 62.5 2.8 9.7E-05 43.4 2.0 49 176-230 13-61 (262)
487 2dr3_A UPF0273 protein PH0284; 62.2 4 0.00014 40.8 3.0 21 49-69 25-45 (247)
488 1p5z_B DCK, deoxycytidine kina 61.8 2.6 8.8E-05 43.4 1.5 24 47-70 24-47 (263)
489 2ce7_A Cell division protein F 61.6 4.9 0.00017 45.5 3.8 22 49-70 51-72 (476)
490 3zvl_A Bifunctional polynucleo 61.5 3.8 0.00013 45.5 2.9 23 48-70 259-281 (416)
491 4dzz_A Plasmid partitioning pr 61.5 6.8 0.00023 38.0 4.5 20 49-68 3-23 (206)
492 3d3q_A TRNA delta(2)-isopenten 61.1 4.2 0.00014 43.9 3.1 23 48-70 8-30 (340)
493 1sky_E F1-ATPase, F1-ATP synth 61.1 5.9 0.0002 44.7 4.3 22 49-70 153-174 (473)
494 2iut_A DNA translocase FTSK; n 61.0 4 0.00014 47.2 3.0 23 47-69 214-236 (574)
495 3t15_A Ribulose bisphosphate c 59.9 7.7 0.00026 40.6 4.8 26 44-69 32-58 (293)
496 2h92_A Cytidylate kinase; ross 59.8 4.8 0.00016 39.7 3.0 21 49-69 5-25 (219)
497 1tf7_A KAIC; homohexamer, hexa 59.6 3.7 0.00013 47.0 2.5 20 50-69 42-63 (525)
498 2qby_A CDC6 homolog 1, cell di 59.4 3.9 0.00013 43.7 2.5 24 47-70 45-68 (386)
499 1c9k_A COBU, adenosylcobinamid 59.3 5.1 0.00017 39.2 3.0 21 50-70 2-22 (180)
500 2dhr_A FTSH; AAA+ protein, hex 59.3 3.6 0.00012 46.9 2.2 22 49-70 66-87 (499)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=3.1e-112 Score=1010.00 Aligned_cols=705 Identities=40% Similarity=0.642 Sum_probs=570.9
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccce
Q 003355 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGE 100 (827)
Q Consensus 21 ~~~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~ 100 (827)
-++++++++|+|+|.|+.+|....+++|+|+|||.+|+|||||||+|+|.+|||++.++|||||+++++.+.+ .+|++
T Consensus 25 ~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~--~~~~~ 102 (772)
T 3zvr_A 25 GMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST--TEYAE 102 (772)
T ss_dssp CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECS--SCEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCC--cchhh
Confidence 4689999999999999999998889999999999999999999999999999999999999999999998875 48999
Q ss_pred eecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHH
Q 003355 101 FLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMS 180 (827)
Q Consensus 101 ~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~ 180 (827)
+.+..++.+.++++++.++...++...|.+++|+.+++.++|++|++++++||||||+.+.+.++||.++...+.+++..
T Consensus 103 ~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~ 182 (772)
T 3zvr_A 103 FLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQ 182 (772)
T ss_dssp CSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHH
T ss_pred eeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCchhh
Q 003355 181 YIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 260 (827)
Q Consensus 181 yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~ 260 (827)
|+....++||+|++++.++..++.+.+++.+++.+.|+|+|+||+|+++++....+++.++..++++||+.|+++|+.+.
T Consensus 183 yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G 262 (772)
T 3zvr_A 183 FVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDI 262 (772)
T ss_dssp HHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEES
T ss_pred HHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEeccccc
Confidence 99988889999999999999999889999999999999999999999988877777777777888999999999999988
Q ss_pred hhhhhHHHHHHHHHhhccCCCccccccccCCchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCCCCCh-
Q 003355 261 MFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESK- 339 (827)
Q Consensus 261 ~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~i~~~l~~~~~el~~lg~~~~~~- 339 (827)
.....+.+++..|..||..+|+|..+.+++|+..|.+.|.+.|..||++.||.++.+|+.++..++.+++++|+++++.
T Consensus 263 ~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~~~~~~~ 342 (772)
T 3zvr_A 263 DGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPDDP 342 (772)
T ss_dssp SSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred ccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCCCCCCCh
Confidence 7777899999999999999999988889999999999999999999999999999999999999999999999876544
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccCcccccccccccccchHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHhhcCCCCCC
Q 003355 340 AGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSAL 419 (827)
Q Consensus 340 ~~~~~~l~~~i~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~F~~~l~~~~~~~~l~~~dI~~~i~n~~G~~~~l 419 (827)
.++..+|++++++|++.|.++|+|.++++.+.++.|||||+++|++.|...+..+++.+.+++.+|+++|+|++|+++++
T Consensus 343 ~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~G~~~~l 422 (772)
T 3zvr_A 343 ARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGL 422 (772)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhCCCCCCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 003355 420 FVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEM 499 (827)
Q Consensus 420 fvp~~~Fe~Lvk~qI~~l~~Psl~c~~~V~~el~~i~~~~~~~~~~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~ 499 (827)
|+|+.+||.||++||++|++||++|++.|++||.+++++|. .+|.|||.|++++.+++.++|++++.+|+++|.+||+|
T Consensus 423 f~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~-~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~~~V~~LId~ 501 (772)
T 3zvr_A 423 FTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS-EKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDI 501 (772)
T ss_dssp CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG-GGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999995 78999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCccchHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCC--------
Q 003355 500 EMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQG-------- 571 (827)
Q Consensus 500 E~~yInT~hpdF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 571 (827)
|++||||+||||+|+++|+..+.+..++...+.. ....+..++|+..++.+.+.+++
T Consensus 502 E~ayintnHpdf~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 566 (772)
T 3zvr_A 502 ELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQ---------------DEILVIRKGWLTINNIGIMKGGSKEYWFVLT 566 (772)
T ss_dssp HHTCCCTTCTTCCCC------------------------------------CCEEEEEEEEESSSCCC---CCEEEEEEE
T ss_pred hcCCCCCCChhhhchHHHHHHHHHHhhcccccCC---------------ccccceeeeeeeecccccccCCCccceeecc
Confidence 9999999999999999988665543332211000 00013344554444444332221
Q ss_pred ------CCcchhhccc--CCC-----CCCCCCCC---ccccccCCCCCCCCCCCCccCCCCCCCCchhhhhhHhh-hccC
Q 003355 572 ------VRPTVEVEKV--APA-----GNTSGSSW---GISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAM-IHLR 634 (827)
Q Consensus 572 ------~~~~~~~~~~--~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~l~ 634 (827)
|+...+.++. .+. ++...+++ ++..+|+... ++.+ |+..+.....+..++.+++.+. .+.+
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 644 (772)
T 3zvr_A 567 AENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQ-RNVY-KDYRQLELACETQEEVDSWKASFLRAG 644 (772)
T ss_dssp SSEEEEESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETTS-SCSB-TTBSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccccccccchhhhcccccccccccccchhhhccccccccccccCCcc-cccc-chhhhhhhhccccccchhhHHhhhhcc
Confidence 1111122221 011 11111122 3445666543 3333 5554444444444444333221 2333
Q ss_pred CCC---------------ccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003355 635 EPP---------------TILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKK 699 (827)
Q Consensus 635 ~~p---------------~~l~~~~~~s~~e~~ei~~ir~ll~SYf~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~ 699 (827)
.+| ..+.....+++++.+||++||+||+|||+||+|+|+|+|||||||||||++|++||+||+++
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ 724 (772)
T 3zvr_A 645 VYPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLAN 724 (772)
T ss_dssp CCBC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHH
T ss_pred cCCccccccccccccCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 34444445678999999999999999999999999999999999999999999999999999
Q ss_pred HhchhhHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Q 003355 700 LYRENLFEEMLQEPEEVAMKRKRTRDTLRVLQQAFRTLDELPLEAD 745 (827)
Q Consensus 700 Ly~~~~~~~LL~E~~~ia~kR~~~~~~l~~L~~A~~~L~~i~~~~~ 745 (827)
||+.+.+++||+|++++++||++|.+|+++|++|+++|++|+..+-
T Consensus 725 ly~~~~~~~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii~~i~~~~~ 770 (772)
T 3zvr_A 725 LYSCGDQNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTTV 770 (772)
T ss_dssp HHHTCCTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HhcccCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999987654
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=5.2e-89 Score=807.01 Aligned_cols=577 Identities=30% Similarity=0.457 Sum_probs=490.7
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccce
Q 003355 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGE 100 (827)
Q Consensus 21 ~~~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~ 100 (827)
+.+.+.++++ +.|.++.+|++..+++|+|+|||++||||||||++|+|. ++|++.|.||+++..+.+.+......|..
T Consensus 20 ~~~~~r~ll~-~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~ 97 (608)
T 3szr_A 20 YEEKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRG 97 (608)
T ss_dssp CHHHHHHHHH-HHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEE
T ss_pred HHHHHHHHHH-HHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCcccccee
Confidence 4556667775 566778899999999999999999999999999999999 57999999999999998776654455665
Q ss_pred eecCC--CccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHH
Q 003355 101 FLHLP--GKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMI 178 (827)
Q Consensus 101 ~~~~~--g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv 178 (827)
.+... ...+.++..+.+.+........+.+.+++...+.+.+.++..|+++|+|+||+...+.++++.+....+.+++
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li 177 (608)
T 3szr_A 98 KVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLI 177 (608)
T ss_dssp EESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHH
T ss_pred EEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHH
Confidence 54432 2346677888888888777777888899999999999999999999999999999888888888889999999
Q ss_pred HHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCccc--HHHhhccccccccceEEEEEcCC
Q 003355 179 MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTD--ARNLLLGKVIPLRLGYVGVVNRS 256 (827)
Q Consensus 179 ~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~--~~~~l~~~~~~l~lG~~~V~nrs 256 (827)
..|+.++.+++|+|++++.|+++++++++++.+++.|.+||+|+||+|+++.++. +.+++.|+.+++++||++|+||+
T Consensus 178 ~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~ 257 (608)
T 3szr_A 178 KKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRG 257 (608)
T ss_dssp HHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSC
T ss_pred HHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCc
Confidence 9999999999999999999999999999999999999999999999999988874 56888999999999999999999
Q ss_pred chhhhhhhhHHHHHHHHHhhccCCCcccccc--ccCCchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCC
Q 003355 257 QEDIMFNRSIKDALVAEEKFFRSRPVYNGLA--DRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGE 334 (827)
Q Consensus 257 ~~d~~~~~s~~~~~~~E~~fF~~~~~~~~~~--~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~i~~~l~~~~~el~~lg~ 334 (827)
++|++.+.++.+++..|.+||.+||||+.+. .++||++|+++|+++|.+||+++||.++.+|+..+.+++++|++||+
T Consensus 258 ~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~ 337 (608)
T 3szr_A 258 QQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGV 337 (608)
T ss_dssp TTCTTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred hhhcccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999998875 38999999999999999999999999999999999999999999999
Q ss_pred CCC-ChhhHHHHHHHHHHHHHHHhhhhccCcccccccccccccchHHHHHHHHHHHhhhhcC----CCCCCchHHHHHHH
Q 003355 335 ITE-SKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVD----PCEDLTDDDIRTAI 409 (827)
Q Consensus 335 ~~~-~~~~~~~~l~~~i~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~F~~~l~~~~----~~~~l~~~dI~~~i 409 (827)
+++ +..+++.+|++++++|++.|+++++|++.. ...++..+++|+.+|+ .|...++ ++....+++|++++
T Consensus 338 ~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~-~~~~~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~~i~~~~ 412 (608)
T 3szr_A 338 DIPEDENEKMFFLIDKVNAFNQDITALMQGEETV-GEEDIRLFTRLRHEFH----KWSTIIENNFQEGHKILSRKIQKFE 412 (608)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCC-CTTCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcC-CCccccHHHHHHHHHH----HHHHHhhhcccccchhHHHHHHHHH
Confidence 765 455688999999999999999999999752 2333444455555555 4433332 23345578899999
Q ss_pred HhhcCCCCCCCCCChhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHhHhhH
Q 003355 410 QNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPS 489 (827)
Q Consensus 410 ~n~~G~~~~lfvp~~~Fe~Lvk~qI~~l~~Psl~c~~~V~~el~~i~~~~~~~~~~rfp~L~~~i~~~v~~~l~~~~~~a 489 (827)
+|++|+++|+|+|+.+||.||++||++|++|+++|++.|++++.+++..++.++|.+||+|++++.+++.++++++..+|
T Consensus 413 ~~~~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~~~f~rfp~L~~~~~~~i~~~~~~~~~~a 492 (608)
T 3szr_A 413 NQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREG 492 (608)
T ss_dssp HHCCSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCccchHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCcchhhhhHHHHHhhhcccccC
Q 003355 490 ETMIGHIIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMAD 569 (827)
Q Consensus 490 ~~~i~~li~~E~~yInT~hpdF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (827)
+++|.++|+||+.| ||+||+|. ..
T Consensus 493 ~~~i~~li~mE~~~-~~~d~~~~--------------~~----------------------------------------- 516 (608)
T 3szr_A 493 EKLIRLHFQMEQIV-YGAFQSSS--------------AT----------------------------------------- 516 (608)
T ss_dssp HHHHHHHHHHHHHC-CCC--------------------------------------------------------------
T ss_pred HHHHHHHHHHhhcc-ccCCcccc--------------CC-----------------------------------------
Confidence 99999999999975 67776662 00
Q ss_pred CCCCcchhhcccCCCCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCCCchhhhhhHhhhccCCCCccCCCCCCCchh
Q 003355 570 QGVRPTVEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQ 649 (827)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~~ 649 (827)
. .+
T Consensus 517 ------------------~---------------------------------------------------------~~-- 519 (608)
T 3szr_A 517 ------------------D---------------------------------------------------------SS-- 519 (608)
T ss_dssp -----------------------------------------------------------------------------C--
T ss_pred ------------------C---------------------------------------------------------cc--
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHHHHHH
Q 003355 650 ENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEVAMKRKRTRDTLRV 729 (827)
Q Consensus 650 e~~ei~~ir~ll~SYf~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~Ly~~~~~~~LL~E~~~ia~kR~~~~~~l~~ 729 (827)
..| |+.+|+|||+||+|||+|+|||+|||||||++++.||++|++.||+.+.+++||+|++++++||++|++++++
T Consensus 520 -~~e---i~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~~~~~~~ll~E~~~~~~~R~~l~~~~~~ 595 (608)
T 3szr_A 520 -MEE---IFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKFLKERLAR 595 (608)
T ss_dssp -TTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred -HHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 013 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccc
Q 003355 730 LQQAFRTLDELP 741 (827)
Q Consensus 730 L~~A~~~L~~i~ 741 (827)
|++|+++|.+|+
T Consensus 596 L~~A~~~l~~~~ 607 (608)
T 3szr_A 596 LTQARRRLAQFP 607 (608)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=2.7e-47 Score=424.26 Aligned_cols=319 Identities=47% Similarity=0.765 Sum_probs=287.8
Q ss_pred CCchHHHHHHHHHHHHHhCCCC--------CCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccC
Q 003355 22 GGSVIPLVNKLQDIFAQLGSQS--------TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK 93 (827)
Q Consensus 22 ~~~~~~~~~~l~d~~~~~g~~~--------~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~ 93 (827)
|+++++++|+|++++..+|... .+++|+|+|||++|||||||||+|+|.+|+|++.++|||+|+++++....
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 6899999999999999988531 26999999999999999999999999999999999999999999998765
Q ss_pred C-CcccceeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHH
Q 003355 94 T-DEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEA 172 (827)
Q Consensus 94 ~-~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~ 172 (827)
. ...|+.|.+.++..+.||++++.++..++....|.+.+|+.+++.+++.+|...+++||||||+.+....+|+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 81 DGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp SCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH
T ss_pred CcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH
Confidence 4 367888888889999999999999999999999999999999999999999999999999999999888888889999
Q ss_pred HHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEE
Q 003355 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 252 (827)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V 252 (827)
.+..++..|+.+++++||+|.+++.+..+++++.+++.+++.+.|+|+|+||+|++++++...+++.+...++++||++|
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEE
Confidence 99999999999999999999899999888888999999999999999999999999888877888888888999999999
Q ss_pred EcCCchhhhhhhhHHHHHHHHHhhccCCCccccccccCCchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhc
Q 003355 253 VNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASY 332 (827)
Q Consensus 253 ~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~i~~~l~~~~~el~~l 332 (827)
+++++++++...++.++...|..||..+++|..+..++|++.|+++|+++|.+||+++||.++.+|+.++.+++++|++|
T Consensus 241 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~l 320 (360)
T 3t34_A 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRL 320 (360)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC----
T ss_pred EECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CCCCCChh
Q 003355 333 GEITESKA 340 (827)
Q Consensus 333 g~~~~~~~ 340 (827)
|+++++..
T Consensus 321 g~~~~~~~ 328 (360)
T 3t34_A 321 GKPIAHGT 328 (360)
T ss_dssp --------
T ss_pred CCCCCCCH
Confidence 99887654
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=6.3e-46 Score=412.17 Aligned_cols=338 Identities=57% Similarity=0.909 Sum_probs=312.4
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccce
Q 003355 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGE 100 (827)
Q Consensus 21 ~~~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~ 100 (827)
-|+++++++|+|+|.|+.+|....+++|+|+|||.+|+|||||||+|+|.+|+|++.++||++|+++++.+.. .+|++
T Consensus 5 ~~~~l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~--~~~~~ 82 (353)
T 2x2e_A 5 SMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT--TEYAE 82 (353)
T ss_dssp -CCSCHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS--SCEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCC--cccee
Confidence 4789999999999999999998889999999999999999999999999999999999999999999988764 58999
Q ss_pred eecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHH
Q 003355 101 FLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMS 180 (827)
Q Consensus 101 ~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~ 180 (827)
|++.+|+.++++++++.++..++.+..|.+.+++...+.+++++|+..+++||||||+.+.+.++|+.++.+.++.++..
T Consensus 83 ~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~ 162 (353)
T 2x2e_A 83 FLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQ 162 (353)
T ss_dssp ETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHH
T ss_pred eeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHH
Confidence 99999999999999999999999988888899999999999999999999999999999988888999998899999999
Q ss_pred HhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCchhh
Q 003355 181 YIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 260 (827)
Q Consensus 181 yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~ 260 (827)
|+..++++||+|++++.++.+++++.+++.+++.+.|+|+|+||+|++++++++.+++.+...++++||+.|.++|+.+.
T Consensus 163 ~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 163 FVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDI 242 (353)
T ss_dssp HHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHH
T ss_pred HHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccc
Confidence 99999999999999999999999888999999999999999999999987776677888888889999999999999988
Q ss_pred hhhhhHHHHHHHHHhhccCCCccccccccCCchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCCCCChh
Q 003355 261 MFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKA 340 (827)
Q Consensus 261 ~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~i~~~l~~~~~el~~lg~~~~~~~ 340 (827)
.....+.+++..|..||..++.|....+++|+..|.+.|.+.|..|+++.||.++.+|+.++..++.++++||+.+++..
T Consensus 243 ~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~~~~~~~~ 322 (353)
T 2x2e_A 243 DGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKH 322 (353)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred cccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCch
Confidence 77777888888999999999999999999999999999999999999999999999999999999999999997655443
Q ss_pred -h--HHHHHHHHHHHHHHHhhhh
Q 003355 341 -G--QGALLLNILSKYSEAFSSM 360 (827)
Q Consensus 341 -~--~~~~l~~~i~~f~~~~~~~ 360 (827)
. ++.+|++++++|++.|+..
T Consensus 323 ~~~~~~~~~~~~~~~f~~~~~~~ 345 (353)
T 2x2e_A 323 GTDSRVDEMLRMYHALKEALSII 345 (353)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Confidence 2 4489999999999998653
No 5
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=349.15 Aligned_cols=263 Identities=17% Similarity=0.218 Sum_probs=193.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccCcccccccccccccchHHHHHHHHHHHhhhhcCCCCCCch----HHHHHHHHhhcCC
Q 003355 340 AGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTD----DDIRTAIQNATGP 415 (827)
Q Consensus 340 ~~~~~~l~~~i~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~F~~~l~~~~~~~~l~~----~dI~~~i~n~~G~ 415 (827)
.++..+|+..++.|++.+.+.++|+... ..|++||...++..|.+|...++....... ++|....++++|+
T Consensus 4 ~e~~~FLidkI~~F~~di~~l~~Gee~~-----~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGr 78 (271)
T 3ljb_A 4 NEKMFFLIDKVNAFNQDITALMQGEETV-----GEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGR 78 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCceecc-----cCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCc
Confidence 3577899999999999999999999753 237899999999999999877655433333 5667777799999
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 003355 416 KSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGH 495 (827)
Q Consensus 416 ~~~lfvp~~~Fe~Lvk~qI~~l~~Psl~c~~~V~~el~~i~~~~~~~~~~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~ 495 (827)
++|||+|+.+||.||++||++|++||++|++.|+++|.+++.+++..+|.+||+|++.+..+|.+++.+|..+|++||++
T Consensus 79 ELPgFv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~ 158 (271)
T 3ljb_A 79 ELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRL 158 (271)
T ss_dssp ----CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCccchHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCCcchhhhhHHHHHhhhcccccCCCCCcc
Q 003355 496 IIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRPT 575 (827)
Q Consensus 496 li~~E~~yInT~hpdF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (827)
+|+||+ ++||+|..|.++.+.+ +. .+. .+++. .
T Consensus 159 ~~~mE~-~vytqD~~Y~~~l~~~-------r~----------~~~-~~~~~--------~-------------------- 191 (271)
T 3ljb_A 159 HFQMEQ-IVYCQDQVYRGALQKV-------RE----------KEL-EEEKK--------K-------------------- 191 (271)
T ss_dssp HHHHHT-SCC----------------------------------------------------------------------
T ss_pred HHHHhc-ccccCCHHHHHHHHHH-------HH----------HHh-ccccc--------c--------------------
Confidence 999999 7999999998654321 00 000 00000 0
Q ss_pred hhhcccCCCCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCCCchhhhhhHhhhccCCCCccCCCCCCCch-hHHHHH
Q 003355 576 VEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSE-QENVEI 654 (827)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~s~-~e~~ei 654 (827)
+ ..+.| +... . .+. ..+.|
T Consensus 192 ----~-------~~~~~-----~~~~-------~------------------------------------~~~~~~~~E- 211 (271)
T 3ljb_A 192 ----K-------SWDFG-----AFQS-------S------------------------------------SATDSSMEE- 211 (271)
T ss_dssp ---------------------------------------------------------------------------CHHH-
T ss_pred ----c-------ccccc-----cccC-------C------------------------------------CCccchHHH-
Confidence 0 00000 0000 0 000 11334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhcCCCHHH
Q 003355 655 AVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPEEV 716 (827)
Q Consensus 655 ~~ir~ll~SYf~IVrK~i~D~VPKaImhfLVn~~k~~Lq~eLi~~Ly~~~~~~~LL~E~~~i 716 (827)
|..+|.|||+||+||++|+|||+||||||+.+++.||++|++.||+++.+++||+|++++
T Consensus 212 --i~~~l~sYf~i~~~rl~d~IP~~I~~~ll~~~~~~lQ~~ml~~l~~~~~~~~LL~E~~d~ 271 (271)
T 3ljb_A 212 --IFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDT 271 (271)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSCGGGHHHHTCCC---
T ss_pred --HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHhcCCCCC
Confidence 567899999999999999999999999999999999999999999999999999999985
No 6
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=3.6e-38 Score=343.21 Aligned_cols=309 Identities=59% Similarity=0.988 Sum_probs=248.7
Q ss_pred CchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccC------CCc
Q 003355 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK------TDE 96 (827)
Q Consensus 23 ~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~------~~~ 96 (827)
+++++++++|+|+++.+|+. .+++|+|+|||.+|||||||||+|+|.+++|++.++||++|+++++...+ ...
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~-~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~ 79 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSD-PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQ 79 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSC-TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCC
T ss_pred CchHHHHHHHHHHHHHcCCC-CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchh
Confidence 57999999999999999987 78999999999999999999999999999999999999999998887653 246
Q ss_pred ccceeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHH
Q 003355 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRT 176 (827)
Q Consensus 97 ~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~ 176 (827)
.|+++.+.+++.+.+++++.+++...+.+..|.+.+++.+++.+++.+|...+++||||||+.+.+..+++.++.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 159 (315)
T 1jwy_B 80 EWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRR 159 (315)
T ss_dssp CEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHH
T ss_pred hhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHH
Confidence 89999999999999999999999999988888888999999999999999999999999999876655666677788999
Q ss_pred HHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCC
Q 003355 177 MIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRS 256 (827)
Q Consensus 177 lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs 256 (827)
++..|+..++++|++|.+++.++...+.+.+++.+++.+.++|+|+||+|+.+.+....+.+.+...+++.+|+.|.+.+
T Consensus 160 ~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 239 (315)
T 1jwy_B 160 MVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRS 239 (315)
T ss_dssp HHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCC
T ss_pred HHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCC
Confidence 99999999997777777778787777767899999999999999999999998766556677766667778999999999
Q ss_pred chhhhhhhhHHHHHHHHHhhccCCCccccccccCCchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhc
Q 003355 257 QEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASY 332 (827)
Q Consensus 257 ~~d~~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~i~~~l~~~~~el~~l 332 (827)
+..++....+.+.+..+..||..+++|..+..+.|+..|.+.|.+.+..++++.||.++.+|+..+.+++++|++|
T Consensus 240 a~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 240 QEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELSTY 315 (315)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred hhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence 9987777889999999999999988898888899999999999999999999999999999999999999999765
No 7
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=3.7e-36 Score=324.49 Aligned_cols=299 Identities=61% Similarity=0.990 Sum_probs=268.8
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCccccee
Q 003355 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF 101 (827)
Q Consensus 22 ~~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~ 101 (827)
|+++++++++|+|.|+.+|.....++|+|+|||.+|+|||||||+|+|.+++|++.++||++|+++++.+.. .+|+++
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~--~~~~~~ 78 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST--TEYAEF 78 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECS--SCEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCC--cccchh
Confidence 678999999999999999988888999999999999999999999999999999999999999999887764 488999
Q ss_pred ecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHH
Q 003355 102 LHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSY 181 (827)
Q Consensus 102 ~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~y 181 (827)
.+..|..+++++.+...+...+.+..|.+.+++...+.+++++|...+++||||||+......+++.++...+..++..|
T Consensus 79 ~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 158 (299)
T 2aka_B 79 LHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQF 158 (299)
T ss_dssp TTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHH
T ss_pred hhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHH
Confidence 88889889999999999888888888888899999999999999889999999999988776667777888899999999
Q ss_pred hcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCchhhh
Q 003355 182 IKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (827)
Q Consensus 182 i~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (827)
+...+++||+|++++.++..++.+.+++.+++.+.++|+|+||+|+.+.+....+++.+....++.||+.+.+.|+....
T Consensus 159 ~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 159 VTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDID 238 (299)
T ss_dssp HTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTT
T ss_pred HcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhcc
Confidence 99999899999999999988887789999999999999999999999876656667777666777899999999988766
Q ss_pred hhhhHHHHHHHHHhhccCCCccccccccCCchHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 003355 262 FNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSAL 322 (827)
Q Consensus 262 ~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~I~~~LP~l~~~i~~~l 322 (827)
.-..+.+.+..|..||...+.|.....++|+..|.+.|.+.+..|+++.||.++++|+.++
T Consensus 239 gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~~ 299 (299)
T 2aka_B 239 GKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299 (299)
T ss_dssp SCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhC
Confidence 6666788888899999888889999899999999999999999999999999999988753
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.73 E-value=5.9e-17 Score=194.19 Aligned_cols=189 Identities=20% Similarity=0.239 Sum_probs=123.6
Q ss_pred CchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceee
Q 003355 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFL 102 (827)
Q Consensus 23 ~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~ 102 (827)
..+...+++|...+..+. -+.++|+|+|.+|+|||||||+|+|.+++|++.++||++|+.+.+..... ....
T Consensus 49 ~~l~~~l~~L~~~~~~l~----~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~----~t~~ 120 (695)
T 2j69_A 49 LSLERDIEDITIASKNLQ----QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKK----VTIH 120 (695)
T ss_dssp CCCHHHHHHHHHHHHHHH----HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCE----EEEE
T ss_pred hHHHHHHHHHHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCe----EEEE
Confidence 344455556665554442 24578999999999999999999999999999999999999997653211 0110
Q ss_pred cCCCc--cccChHHHHHHHH---HhhhhhcCCCCcccccceEEEEecCCc---ccEEEEeCCCCCcCCCCCCchHHHHHH
Q 003355 103 HLPGK--RFYDFSEIRREIQ---AQTDKEAGGNKGVSDKQIRLKIFSPHV---LDITLVDLPGITKVPVGEQPADIEARI 174 (827)
Q Consensus 103 ~~~g~--~~~d~~~i~~~i~---~~t~~~~g~~~~~s~~~i~l~i~~p~~---~~ltLVDlPGi~~~~~~~q~~di~~~i 174 (827)
...|. ...++..+...+. ...................++|+.|.. .+++||||||+.... ..
T Consensus 121 ~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~----------~~ 190 (695)
T 2j69_A 121 FNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE----------AR 190 (695)
T ss_dssp ESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH----------TC
T ss_pred EcCCCcccccChhhhhhhhcCCHHHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh----------hH
Confidence 11121 1222222221110 001111222233445666777777764 479999999986431 13
Q ss_pred HHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 175 RTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 175 ~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
..++..|+...+ ++|+|++++..++..+...+.+.+...+.++++|+||+|+.+.
T Consensus 191 ~~~~~~~i~~aD-~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 191 NELSLGYVNNCH-AILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHTHHHHSSS-EEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHhCC-EEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 467778999876 7888888888877766444555677678899999999999754
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.41 E-value=2.3e-12 Score=131.77 Aligned_cols=129 Identities=22% Similarity=0.304 Sum_probs=86.9
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCC-ccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFL-PRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~l-P~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (827)
-..++|+|+|..|+|||||+|+|+|..++ ..+.. .+|+.+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~------------------------------------- 69 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN------------------------------------- 69 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE-------------------------------------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE-------------------------------------
Confidence 46789999999999999999999998632 11111 1222211
Q ss_pred hhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCc--cEEEeecCCCCccc
Q 003355 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPS--CLILAVTPANSDLA 200 (827)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iIL~V~~a~~d~~ 200 (827)
...+.......++||||||+...... ....+.+..++..|+.... +++++|+++...+.
T Consensus 70 ----------------~~~~~~~~~~~~~l~DtpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~ 130 (223)
T 4dhe_A 70 ----------------YFSVGPAAEPVAHLVDLPGYGYAEVP---GAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLT 130 (223)
T ss_dssp ----------------EEEESCTTSCSEEEEECCCCCSSCCC---STHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC
T ss_pred ----------------EEEecCCCCCcEEEEcCCCCCcccCC---hhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCC
Confidence 11111112246899999998765332 2345677788888888533 36778888877665
Q ss_pred chHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 201 NSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 201 ~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
..+ ..+.+.+...+.++|+|+||+|+.+.
T Consensus 131 ~~~-~~~~~~l~~~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 131 ELD-RRMIEWFAPTGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp HHH-HHHHHHHGGGCCCEEEEEECGGGSCH
T ss_pred HHH-HHHHHHHHhcCCCEEEEEeccccCCh
Confidence 544 45666666677899999999999864
No 10
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.41 E-value=3.7e-11 Score=140.17 Aligned_cols=164 Identities=16% Similarity=0.233 Sum_probs=99.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCC--ccCCCccccceEEEEeeccCCCcccceeecCCCccc-cChHHHHHHHHHh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL--PRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF-YDFSEIRREIQAQ 122 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~l--P~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~-~d~~~i~~~i~~~ 122 (827)
..|.|+|+|..|+|||||||+|+|.++. +++..++|.+.+.+..... +.. .+|... .+... .+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~------~~i--~~g~~l~~~~~~---~~~-- 130 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGET------EGT--VPGNALVVDPEK---PFR-- 130 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSS------SEE--ECCC----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCc------ccc--cCCceeeecCcc---cHH--
Confidence 5689999999999999999999999875 5777777766655543211 100 011110 00000 000
Q ss_pred hhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHH--HHHHHHHHhcCCccEEEeecCCCC-cc
Q 003355 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEAR--IRTMIMSYIKQPSCLILAVTPANS-DL 199 (827)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~--i~~lv~~yi~~~~~iIL~V~~a~~-d~ 199 (827)
.....+..+....+++.+.++....++||||||+.+... ..+... +..++..|+...+ +||+|+++.. +.
T Consensus 131 --~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~----~~~~~~~~f~~~~~~~l~~aD-~il~VvDa~~~~~ 203 (550)
T 2qpt_A 131 --KLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAK----QRVSRGYDFPAVLRWFAERVD-LIILLFDAHKLEI 203 (550)
T ss_dssp ---------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCS-EEEEEEETTSCCC
T ss_pred --HHhhhcccccccceEEeccccccCCEEEEECcCCCCcch----hHHHHHhhHHHHHHHHHHhCC-EEEEEEeCCcCCC
Confidence 000112234455566666655556899999999975321 111111 4566778888887 5666667665 34
Q ss_pred cchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 200 ANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 200 ~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
...+ ..+++.+...+.++|+|+||+|+.+.
T Consensus 204 ~~~~-~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 204 SDEF-SEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp CHHH-HHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred CHHH-HHHHHHHHhcCCCEEEEEECCCccCH
Confidence 4433 56777887778899999999999974
No 11
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.39 E-value=5.1e-12 Score=137.06 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=86.1
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCc-cccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~-~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...|+++|.+|||||||+|+|+|.++...+..+ +||..+..
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~-------------------------------------- 51 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLG-------------------------------------- 51 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEE--------------------------------------
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEE--------------------------------------
Confidence 347999999999999999999999864332221 23222111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
.+..+....++||||||+.+... ...+.+.+...+..|+...+ ++|+|+++.......+..
T Consensus 52 ---------------~~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD-~il~VvD~~~~~~~~~~~ 112 (308)
T 3iev_A 52 ---------------VKNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEAD-VILFMIDATEGWRPRDEE 112 (308)
T ss_dssp ---------------EEEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCS-EEEEEEETTTBSCHHHHH
T ss_pred ---------------EEecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCC-EEEEEEeCCCCCCchhHH
Confidence 11111123689999999976431 13466778888889999887 666677777666555532
Q ss_pred HHHHHhCCCCCceEEeeecCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+...+...+.++|+|+||+|+.+
T Consensus 113 ~~~~~l~~~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 113 IYQNFIKPLNKPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHHTGGGCCCEEEEEECGGGSS
T ss_pred HHHHHHHhcCCCEEEEEECccCCC
Confidence 226666666789999999999984
No 12
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.39 E-value=1.1e-11 Score=123.16 Aligned_cols=125 Identities=22% Similarity=0.211 Sum_probs=81.9
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCc-cccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~-~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
-..++|+|+|..|+|||||+|+|+|..+-...... +|+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~-------------------------------------- 62 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSIN-------------------------------------- 62 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEE--------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeE--------------------------------------
Confidence 46789999999999999999999998742222111 111110
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCc--cEEEeecCCCCcccc
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPS--CLILAVTPANSDLAN 201 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iIL~V~~a~~d~~~ 201 (827)
.... ...+.||||||+..... +......+..+...|++... +++++|+++......
T Consensus 63 ---------------~~~~----~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~ 120 (195)
T 3pqc_A 63 ---------------FYLV----NSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQD 120 (195)
T ss_dssp ---------------EEEE----TTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH
T ss_pred ---------------EEEE----CCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCH
Confidence 0000 12588999999765322 23334567778888887542 467777887765554
Q ss_pred hHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 202 SDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 202 ~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+ ..+.+++...+.++|+|+||+|+.+.
T Consensus 121 ~~-~~~~~~~~~~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 121 SD-LMMVEWMKSLNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp HH-HHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred HH-HHHHHHHHHcCCCEEEEEEChhcCCh
Confidence 44 34555555557999999999999864
No 13
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.36 E-value=3.2e-12 Score=138.27 Aligned_cols=125 Identities=22% Similarity=0.219 Sum_probs=84.4
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
....|+|||.+|+|||||+|+|+|.++...+.. .+||..+.-.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i------------------------------------ 49 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI------------------------------------ 49 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE------------------------------------
Confidence 345799999999999999999999987443322 1333221100
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
.......+.||||||+.+.. ..+.+.+...+..|++..+ ++|+|+++...+...+
T Consensus 50 ------------------~~~~~~~l~l~DTpG~~~~~-----~~l~~~~~~~~~~~l~~ad-~il~VvD~~~~~~~~~- 104 (301)
T 1wf3_A 50 ------------------LTEGRRQIVFVDTPGLHKPM-----DALGEFMDQEVYEALADVN-AVVWVVDLRHPPTPED- 104 (301)
T ss_dssp ------------------EEETTEEEEEEECCCCCCCC-----SHHHHHHHHHHHHHTSSCS-EEEEEEETTSCCCHHH-
T ss_pred ------------------EEeCCcEEEEecCccccchh-----hHHHHHHHHHHHHHHhcCC-EEEEEEECCCCCChHH-
Confidence 00112368999999987532 3466677888889999887 6666777766555444
Q ss_pred HHHHHHhCCC--CCceEEeeecCCCCCCc
Q 003355 205 LQIAGIADPD--GYRTIGIITKLDIMDRG 231 (827)
Q Consensus 205 l~la~~~dp~--g~rtIgVlTK~D~~~~~ 231 (827)
..+.+.+... +.++|+|+||+|+....
T Consensus 105 ~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~ 133 (301)
T 1wf3_A 105 ELVARALKPLVGKVPILLVGNKLDAAKYP 133 (301)
T ss_dssp HHHHHHHGGGTTTSCEEEEEECGGGCSSH
T ss_pred HHHHHHHHhhcCCCCEEEEEECcccCCch
Confidence 3344444433 68999999999998643
No 14
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.35 E-value=1.6e-11 Score=122.42 Aligned_cols=125 Identities=25% Similarity=0.303 Sum_probs=80.8
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCc--cccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~--~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (827)
...++|+|+|..++|||||+|+|+|..+.+..... +|+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--------------------------------------- 61 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT--------------------------------------- 61 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CC---------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceee---------------------------------------
Confidence 35789999999999999999999998753221110 0110
Q ss_pred hhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCc--cEEEeecCCCCccc
Q 003355 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPS--CLILAVTPANSDLA 200 (827)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iIL~V~~a~~d~~ 200 (827)
.....+ ...+.||||||+.... .+.+....+..++..|+.... +++++|+++.....
T Consensus 62 --------------~~~~~~----~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 120 (195)
T 1svi_A 62 --------------LNFYII----NDELHFVDVPGYGFAK---VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS 120 (195)
T ss_dssp --------------EEEEEE----TTTEEEEECCCBCCCS---SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC
T ss_pred --------------EEEEEE----CCcEEEEECCCCCccc---cCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCC
Confidence 001111 1268999999976542 234445677788888887552 46777777776655
Q ss_pred chHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 201 NSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 201 ~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
..+ ..+.+.+...+.++++|+||+|+.+.
T Consensus 121 ~~~-~~~~~~~~~~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 121 NDD-VQMYEFLKYYGIPVIVIATKADKIPK 149 (195)
T ss_dssp HHH-HHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred HHH-HHHHHHHHHcCCCEEEEEECcccCCh
Confidence 544 34555555567899999999999874
No 15
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.32 E-value=1.6e-11 Score=130.83 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=80.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
-+|+|||..|+|||||+|+|+|.+.++.+...++... .
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~-----~------------------------------------- 46 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI-----K------------------------------------- 46 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc-----C-------------------------------------
Confidence 4799999999999999999999887654432111100 0
Q ss_pred CCCCcccccceEEEEecCC-cccEEEEeCCCCCcCCC-CCCchHHHHHHHHHHHHHhcC-------------CccEEEee
Q 003355 128 GGNKGVSDKQIRLKIFSPH-VLDITLVDLPGITKVPV-GEQPADIEARIRTMIMSYIKQ-------------PSCLILAV 192 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~-~~~ltLVDlPGi~~~~~-~~q~~di~~~i~~lv~~yi~~-------------~~~iIL~V 192 (827)
.++..+.....+...+ ...++||||||+.+... .+.-..+...+.+....|+.. .++++++|
T Consensus 47 ---~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i 123 (274)
T 3t5d_A 47 ---KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFI 123 (274)
T ss_dssp -----CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEE
T ss_pred ---CceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEe
Confidence 0011111122222211 13689999999954422 222233333344444566654 45677777
Q ss_pred cCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 193 TPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 193 ~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.++...+...+ ..+.+.+.. +.++|+|+||+|++..
T Consensus 124 ~~~~~~~~~~d-~~~l~~l~~-~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 124 APSGHGLKPLD-IEFMKRLHE-KVNIIPLIAKADTLTP 159 (274)
T ss_dssp CSCCSSCCHHH-HHHHHHHTT-TSCEEEEESSGGGSCH
T ss_pred cCCCCCCCHHH-HHHHHHHhc-cCCEEEEEeccCCCCH
Confidence 77776776666 567777776 7999999999999853
No 16
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.26 E-value=1.9e-11 Score=127.22 Aligned_cols=127 Identities=21% Similarity=0.266 Sum_probs=74.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC--ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g--~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
..++|+|||..|+|||||+|+|+|..++..+.. .+|+.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~----------------------------------- 72 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS----------------------------------- 72 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE-----------------------------------
Confidence 567999999999999999999999987544322 2333321111
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d 203 (827)
+.+ ....++||||||+......+ .++...+...+..+...++ ++|+|++++ .+...+
T Consensus 73 ----------------~~~---~~~~i~liDTpG~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~l~v~d~~-~~~~~~ 129 (239)
T 3lxx_A 73 ----------------SSW---KETELVVVDTPGIFDTEVPN--AETSKEIIRCILLTSPGPH-ALLLVVPLG-RYTEEE 129 (239)
T ss_dssp ----------------EEE---TTEEEEEEECCSCC-----C--HHHHHHHHHHHHHTTTCCS-EEEEEEETT-CCSSHH
T ss_pred ----------------EEe---CCceEEEEECCCccCCCCCH--HHHHHHHHHHHHhcCCCCc-EEEEEeeCC-CCCHHH
Confidence 111 11258999999998654332 4455566677767777777 555566665 333322
Q ss_pred --HHHHHH-HhC-CCCCceEEeeecCCCCCC
Q 003355 204 --ALQIAG-IAD-PDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 204 --~l~la~-~~d-p~g~rtIgVlTK~D~~~~ 230 (827)
.+.... .+. ....++|+|+||+|+.+.
T Consensus 130 ~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 130 HKATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred HHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 222222 111 123589999999999864
No 17
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.22 E-value=7.4e-11 Score=134.86 Aligned_cols=151 Identities=20% Similarity=0.324 Sum_probs=90.7
Q ss_pred CCchHHHHHHHHHHHHHhCC-CCCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCc-cccceEEEEeeccCCCcccc
Q 003355 22 GGSVIPLVNKLQDIFAQLGS-QSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYG 99 (827)
Q Consensus 22 ~~~~~~~~~~l~d~~~~~g~-~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~-~Tr~p~~l~l~~~~~~~~~~ 99 (827)
+..+-.+++.+.+.+..... ...-..++|+|+|..++|||||+|+|+|.+....+... +|+.+
T Consensus 169 g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~--------------- 233 (456)
T 4dcu_A 169 GLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA--------------- 233 (456)
T ss_dssp CTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CT---------------
T ss_pred ccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEE---------------
Confidence 44566666666554332221 12235689999999999999999999988642221111 11110
Q ss_pred eeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHH-H
Q 003355 100 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTM-I 178 (827)
Q Consensus 100 ~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~l-v 178 (827)
....+.+. ...++||||||+.+........+ ....+ .
T Consensus 234 ------------------------------------~~~~~~~~---~~~~~l~DT~G~~~~~~~~~~~e---~~~~~~~ 271 (456)
T 4dcu_A 234 ------------------------------------VDTSFTYN---QQEFVIVDTAGMRKKGKVYETTE---KYSVLRA 271 (456)
T ss_dssp ------------------------------------TSEEEEET---TEEEEETTGGGTTTBTTBCCCCS---HHHHHHH
T ss_pred ------------------------------------EEEEEEEC---CceEEEEECCCCCcCcccchHHH---HHHHHHH
Confidence 00111111 12689999999875432211111 22222 3
Q ss_pred HHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 179 MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 179 ~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
..|++.++ ++|+|+++...+..++ ..++..+...+.++|+|+||+|+.+..
T Consensus 272 ~~~~~~ad-~~llviD~~~~~~~~~-~~~~~~~~~~~~~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 272 LKAIDRSE-VVAVVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAVDKD 322 (456)
T ss_dssp HHHHHHCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGSCCC
T ss_pred HHHHhhCC-EEEEEEeCCCCcCHHH-HHHHHHHHHcCCCEEEEEEChhcCCCc
Confidence 35777776 6666778887777666 466666666789999999999998643
No 18
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.19 E-value=3.4e-11 Score=115.82 Aligned_cols=122 Identities=20% Similarity=0.230 Sum_probs=73.6
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
+|+|+|+|..++|||||+|+|++..+...... .+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 39 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL----------------------------------------- 39 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CC-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-----------------------------------------
Confidence 47899999999999999999998864211111 111110
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
....+...+ ..+.|+||||...... ....+......|+...+ ++++|+++...+...+ .
T Consensus 40 ------------~~~~~~~~~-~~~~l~Dt~G~~~~~~------~~~~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~-~ 98 (161)
T 2dyk_A 40 ------------KEGVVETDR-GRFLLVDTGGLWSGDK------WEKKIQEKVDRALEDAE-VVLFAVDGRAELTQAD-Y 98 (161)
T ss_dssp ------------EEEEEEETT-EEEEEEECGGGCSSSS------CCHHHHHHHHHHTTTCS-EEEEEEESSSCCCHHH-H
T ss_pred ------------eEEEEEeCC-ceEEEEECCCCCCccc------hHHHHHHHHHHHHHhCC-EEEEEEECCCcccHhH-H
Confidence 011111111 2689999999865321 12345666778888887 5555666665444433 2
Q ss_pred HHHHHhCCCCCceEEeeecCCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+.+.+...+.++++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 99 EVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp HHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred HHHHHHHhcCCCEEEEEECcccccc
Confidence 2333333246889999999999864
No 19
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.19 E-value=7.2e-11 Score=124.29 Aligned_cols=126 Identities=17% Similarity=0.129 Sum_probs=78.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCc--cccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~--~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
...+|+|+|..|||||||+|+|+|...++.+... +|+......
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~----------------------------------- 65 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ----------------------------------- 65 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEE-----------------------------------
Confidence 4578999999999999999999998865544332 333221110
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d 203 (827)
+. . ....+.||||||+.+.... ...+...+...+..+++.++ ++|+|+++.. +...+
T Consensus 66 ----------------~~--~-~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~~~~~~~~~d-~il~V~d~~~-~~~~~ 122 (260)
T 2xtp_A 66 ----------------GS--W-GNREIVIIDTPDMFSWKDH--CEALYKEVQRCYLLSAPGPH-VLLLVTQLGR-YTSQD 122 (260)
T ss_dssp ----------------EE--E-TTEEEEEEECCGGGGSSCC--CHHHHHHHHHHHHHHTTCCS-EEEEEEETTC-CCHHH
T ss_pred ----------------EE--e-CCCEEEEEECcCCCCCCCC--HHHHHHHHHHHHHhcCCCCc-EEEEEEeCCC-CCHHH
Confidence 00 0 1135899999999765322 23333345566667888887 5555556553 44333
Q ss_pred --HHHHHHHhCCC--CCceEEeee-cCCCCC
Q 003355 204 --ALQIAGIADPD--GYRTIGIIT-KLDIMD 229 (827)
Q Consensus 204 --~l~la~~~dp~--g~rtIgVlT-K~D~~~ 229 (827)
.+..+..+... +.+.|+|+| |+|+.+
T Consensus 123 ~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 123 QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 23344443221 468888888 999984
No 20
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.19 E-value=6.1e-11 Score=125.17 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=75.6
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.|+|+|+|.+|+|||||+|+|+|..+ ..+.- .+|.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv------------------------------------------- 36 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTV------------------------------------------- 36 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSS-------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceE-------------------------------------------
Confidence 48999999999999999999999863 11111 1111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHh--cCCccEEEeecCCCCcccchH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYI--KQPSCLILAVTPANSDLANSD 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi--~~~~~iIL~V~~a~~d~~~~d 203 (827)
+...-.+...+ ..+.||||||+.+....++... ..+.+...|+ .+++ ++++|+++... ..
T Consensus 37 ----------~~~~~~~~~~~-~~~~lvDtpG~~~~~~~~~~~~---~~e~i~~~~~~~~~~d-~vi~VvDas~~---~~ 98 (256)
T 3iby_A 37 ----------EKKTGEFLLGE-HLIEITDLPGVYSLVANAEGIS---QDEQIAAQSVIDLEYD-CIINVIDACHL---ER 98 (256)
T ss_dssp ----------EEEEEEEEETT-EEEEEEECCCCSSCC------C---HHHHHHHHHHHHSCCS-EEEEEEEGGGH---HH
T ss_pred ----------EEEEEEEEECC-eEEEEEeCCCcccccccccCCC---HHHHHHHHHHhhCCCC-EEEEEeeCCCc---hh
Confidence 00111111111 2689999999976543211112 2334566777 6776 66666666652 22
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+.+..++...+.++|+|+||+|+..
T Consensus 99 ~~~l~~~l~~~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 99 HLYLTSQLFELGKPVVVALNMMDIAE 124 (256)
T ss_dssp HHHHHHHHTTSCSCEEEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 35677788888999999999999874
No 21
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.18 E-value=2.2e-11 Score=131.67 Aligned_cols=123 Identities=21% Similarity=0.253 Sum_probs=77.6
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCc-cccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~-~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
..-+.|+|||.+|+|||||+|+|+|..+.+.+..+ +||.... +.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~------------gi----------------------- 50 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIV------------GI----------------------- 50 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEE------------EE-----------------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEE------------EE-----------------------
Confidence 34467999999999999999999998753332221 2222110 00
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCC-cCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGIT-KVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~-~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (827)
+.. ....++|+||||+. ... ..+...+...+..++...+ ++++|+++.. +...
T Consensus 51 ------------------~~~-~~~~i~~iDTpG~~~~~~-----~~l~~~~~~~~~~~l~~~D-~vl~Vvd~~~-~~~~ 104 (301)
T 1ega_A 51 ------------------HTE-GAYQAIYVDTPGLHMEEK-----RAINRLMNKAASSSIGDVE-LVIFVVEGTR-WTPD 104 (301)
T ss_dssp ------------------EEE-TTEEEEEESSSSCCHHHH-----HHHHHHHTCCTTSCCCCEE-EEEEEEETTC-CCHH
T ss_pred ------------------EEE-CCeeEEEEECcCCCccch-----hhHHHHHHHHHHHHHhcCC-EEEEEEeCCC-CCHH
Confidence 011 12368999999986 210 1122223333455666665 6777777765 6655
Q ss_pred HHHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 203 DALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 203 d~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+ ..+++.+...+.+.|+|+||+|+..
T Consensus 105 ~-~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 105 D-EMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp H-HHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred H-HHHHHHHHhcCCCEEEEEECcccCc
Confidence 5 3566666666799999999999986
No 22
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.17 E-value=5.9e-11 Score=118.21 Aligned_cols=116 Identities=20% Similarity=0.203 Sum_probs=69.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+++..... |....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~-t~~~~---------------------------------------- 58 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILP-TIGFS---------------------------------------- 58 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCC-CSSEE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCC-cccee----------------------------------------
Confidence 3468999999999999999999998632322221 11100
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
...+.+. ...+.|+||||... .+.+...|+...+ ++++|++++...+-..+.
T Consensus 59 -----------~~~~~~~---~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~ 110 (190)
T 2h57_A 59 -----------IEKFKSS---SLSFTVFDMSGQGR-------------YRNLWEHYYKEGQ-AIIFVIDSSDRLRMVVAK 110 (190)
T ss_dssp -----------EEEEECS---SCEEEEEEECCSTT-------------TGGGGGGGGGGCS-EEEEEEETTCHHHHHHHH
T ss_pred -----------EEEEEEC---CEEEEEEECCCCHH-------------HHHHHHHHHhcCC-EEEEEEECCCHHHHHHHH
Confidence 0011111 13689999999542 2234457888887 555566665432222221
Q ss_pred H----HHHHhCC--CCCceEEeeecCCCCCC
Q 003355 206 Q----IAGIADP--DGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~----la~~~dp--~g~rtIgVlTK~D~~~~ 230 (827)
. +.+.... .+.++|+|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 111 EELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp HHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 2 2222221 46899999999999864
No 23
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.17 E-value=1.1e-10 Score=132.65 Aligned_cols=123 Identities=21% Similarity=0.284 Sum_probs=76.5
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCC-CccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~-g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
+|.|++||.+|+|||||+|+|+|..+--++. -.+||-. .+
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~------------~~--------------------------- 41 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDP------------VQ--------------------------- 41 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC--------------CC------------SE---------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccce------------ee---------------------------
Confidence 5899999999999999999999986311111 1111111 11
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
-.+... ...+.||||||+.... ...+.+.++.++..|++.++ ++|+|+++...++..+ .
T Consensus 42 --------------~~~~~~-~~~~~l~DT~G~~~~~----~~~~~~~~~~~~~~~~~~ad-~il~V~D~~~~~~~~d-~ 100 (439)
T 1mky_A 42 --------------DTVEWY-GKTFKLVDTCGVFDNP----QDIISQKMKEVTLNMIREAD-LVLFVVDGKRGITKED-E 100 (439)
T ss_dssp --------------EEEEET-TEEEEEEECTTTTSSG----GGCCCHHHHHHHHHHHTTCS-EEEEEEETTTCCCHHH-H
T ss_pred --------------EEEEEC-CeEEEEEECCCccccc----cchHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHH-H
Confidence 111111 1257899999986431 11234567788889999887 6677778777666544 3
Q ss_pred HHHHHhCCCCCceEEeeecCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.++..+...+.++|+|+||+|+.+
T Consensus 101 ~i~~~l~~~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 101 SLADFLRKSTVDTILVANKAENLR 124 (439)
T ss_dssp HHHHHHHHHTCCEEEEEESCCSHH
T ss_pred HHHHHHHHcCCCEEEEEeCCCCcc
Confidence 445555445789999999999853
No 24
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.15 E-value=1.5e-10 Score=131.59 Aligned_cols=151 Identities=21% Similarity=0.315 Sum_probs=89.4
Q ss_pred CCCchHHHHHHHHHHHHHhCCC-CCCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCccc
Q 003355 21 LGGSVIPLVNKLQDIFAQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEY 98 (827)
Q Consensus 21 ~~~~~~~~~~~l~d~~~~~g~~-~~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~ 98 (827)
-+..+-.+++.+.+.+...... ..-..++|+|||.+|+|||||+|+|+|..+...+.- .+|+-..
T Consensus 148 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~------------- 214 (436)
T 2hjg_A 148 HGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAV------------- 214 (436)
T ss_dssp TTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------C-------------
T ss_pred CCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeee-------------
Confidence 3455666667666544321100 122567999999999999999999999875322111 1111110
Q ss_pred ceeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHH-
Q 003355 99 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTM- 177 (827)
Q Consensus 99 ~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~l- 177 (827)
...+.+. ...+.||||||+.+.....+ .++ ....+
T Consensus 215 --------------------------------------~~~~~~~---~~~~~l~DT~G~~~~~~~~~--~~e-~~~~~~ 250 (436)
T 2hjg_A 215 --------------------------------------DTSFTYN---QQEFVIVDTAGMRKKGKVYE--TTE-KYSVLR 250 (436)
T ss_dssp --------------------------------------CEEEEET---TEEEEETTHHHHTCBTTBCC--CCS-HHHHHH
T ss_pred --------------------------------------EEEEEEC---CeEEEEEECCCcCcCccccc--hHH-HHHHHH
Confidence 0011111 12489999999855432111 111 11111
Q ss_pred HHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 178 IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 178 v~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
...|++.++ ++|+|+++......++ ..++..+...+.++|+|+||+|+.+.
T Consensus 251 ~~~~~~~ad-~~llv~D~~~~~s~~~-~~~~~~~~~~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 251 ALKAIDRSE-VVAVVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp HHHHHHHCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred HHHHHHhCC-EEEEEEcCCcCCcHHH-HHHHHHHHHcCCcEEEEEECccCCCc
Confidence 235777776 6667778877777666 45666666668999999999999864
No 25
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.14 E-value=6.9e-10 Score=114.27 Aligned_cols=126 Identities=14% Similarity=0.200 Sum_probs=72.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..++|+|+|..|+|||||+|+|+|..+.......+|+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~---------------------------------------- 67 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLY---------------------------------------- 67 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEE----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeee----------------------------------------
Confidence 4679999999999999999999998753211111121110
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCccc--chH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA--NSD 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~--~~d 203 (827)
+.........+.||||||....+.... ..+. . ..+..|....+ ++++|++++.... ...
T Consensus 68 --------------~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~--~-~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 128 (228)
T 2qu8_A 68 --------------VGHFDHKLNKYQIIDTPGLLDRAFENR-NTIE--M-TTITALAHING-VILFIIDISEQCGLTIKE 128 (228)
T ss_dssp --------------EEEEEETTEEEEEEECTTTTTSCGGGC-CHHH--H-HHHHHHHTSSE-EEEEEEETTCTTSSCHHH
T ss_pred --------------eeeeecCCCeEEEEECCCCcCcccchh-hhHH--H-HHHHHhhcccc-EEEEEEecccccCcchHH
Confidence 000000123689999999965321111 1111 1 22234555555 5666667665422 223
Q ss_pred HHHHHHHhCCC--CCceEEeeecCCCCCC
Q 003355 204 ALQIAGIADPD--GYRTIGIITKLDIMDR 230 (827)
Q Consensus 204 ~l~la~~~dp~--g~rtIgVlTK~D~~~~ 230 (827)
...+...+... +.++|+|+||+|+.+.
T Consensus 129 ~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 129 QINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp HHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred HHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 34555555543 6899999999999864
No 26
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.13 E-value=1.1e-09 Score=108.34 Aligned_cols=123 Identities=20% Similarity=0.347 Sum_probs=74.7
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
+++|+|+|..|+|||||+|+|++..+ +.+.. .+|+.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~------------------------------------------ 37 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRK------------------------------------------ 37 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTS------------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCccce------------------------------------------
Confidence 46899999999999999999999875 22211 11111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcC-Ccc--EEEeecCCCCcccc-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQ-PSC--LILAVTPANSDLAN- 201 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~-~~~--iIL~V~~a~~d~~~- 201 (827)
...+.+. .+.|+||||+..... -+....+.++.+...|++. .+. +++.|+++......
T Consensus 38 -----------~~~~~~~-----~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~ 99 (190)
T 2cxx_A 38 -----------IIEIEWK-----NHKIIDMPGFGFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 99 (190)
T ss_dssp -----------CEEEEET-----TEEEEECCCBSCCTT--SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHH
T ss_pred -----------eEEEecC-----CEEEEECCCcccccc--CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHH
Confidence 1111111 689999999754322 1233345677777788775 443 45555655421100
Q ss_pred h---------HHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 202 S---------DALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 202 ~---------d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
. ....+.+.+...+.++++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 100 KRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC
T ss_pred HhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc
Confidence 0 0022334444457899999999999864
No 27
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.13 E-value=1.3e-10 Score=113.79 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=74.0
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 44 ~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
.-..++|+|+|..++|||||+|+|++..+.+......|...
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~--------------------------------------- 45 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI--------------------------------------- 45 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC---------------------------------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee---------------------------------------
Confidence 34678999999999999999999999876432221111110
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d 203 (827)
....+.+. ...+.|+||||...-. .+...|+...+ ++++|++++.... ..
T Consensus 46 ------------~~~~~~~~---~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d-~~i~v~d~~~~~~-~~ 95 (178)
T 2lkc_A 46 ------------GAYQVTVN---DKKITFLDTPGHEAFT-------------TMRARGAQVTD-IVILVVAADDGVM-PQ 95 (178)
T ss_dssp ------------CCCEEEET---TEEEEESCCCSSSSSS-------------CSCCSSCCCCC-EEEEEEETTCCCC-HH
T ss_pred ------------eEEEEEeC---CceEEEEECCCCHHHH-------------HHHHHHHhhCC-EEEEEEECCCCCc-HH
Confidence 00011111 1257899999974332 11225666666 4555556555433 33
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+..++.+...+.++++|+||+|+.+.
T Consensus 96 ~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 96 TVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp HHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred HHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 356666666567899999999999864
No 28
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.13 E-value=1.2e-10 Score=122.17 Aligned_cols=126 Identities=18% Similarity=0.154 Sum_probs=71.1
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCc--cccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~--~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
-.+|+|||.+|+|||||+|+|+|..++..+... +|+.+.....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~----------------------------------- 65 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSR----------------------------------- 65 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEE-----------------------------------
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEE-----------------------------------
Confidence 457999999999999999999999876544322 4443321111
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH-
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD- 203 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d- 203 (827)
.. ....++||||||+.+...... .+....+...+..+...++ ++|+|++++. +...+
T Consensus 66 ------------------~~-~~~~i~liDTPG~~~~~~~~~-~~~~~~i~~~~~~~~~~~d-~il~V~d~~~-~~~~~~ 123 (247)
T 3lxw_A 66 ------------------RW-DKCHVEVVDTPDIFSSQVSKT-DPGCEERGHCYLLSAPGPH-ALLLVTQLGR-FTAQDQ 123 (247)
T ss_dssp ------------------EE-TTEEEEEEECCSCSSTTHHHH-STTSHHHHHHHHHHTTCCS-EEEEEEETTB-CCHHHH
T ss_pred ------------------EE-CCcEEEEEECCCCCCCCCCcH-HHHHHHHHHHHHhcCCCCC-EEEEEEeCCC-CCHHHH
Confidence 00 113589999999975431100 0111122222223346776 6666667653 44333
Q ss_pred -HHHHHHHh-CCC--CCceEEeeecCCCCC
Q 003355 204 -ALQIAGIA-DPD--GYRTIGIITKLDIMD 229 (827)
Q Consensus 204 -~l~la~~~-dp~--g~rtIgVlTK~D~~~ 229 (827)
+++.++.+ .+. +.++|+|.||.|+.+
T Consensus 124 ~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 124 QAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 23444443 221 578899999999975
No 29
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.13 E-value=3e-10 Score=111.27 Aligned_cols=119 Identities=13% Similarity=0.228 Sum_probs=63.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+.+....+.+.-.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 45 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF----------------------------------------- 45 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC-----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEE-----------------------------------------
Confidence 356899999999999999999998875321111110000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
....+.+.+.....+.|+||||.. ..+.+...|++..+. +++|.++.....-....
T Consensus 46 ----------~~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~ 101 (182)
T 1ky3_A 46 ----------LTKEVTVDGDKVATMQVWDTAGQE-------------RFQSLGVAFYRGADC-CVLVYDVTNASSFENIK 101 (182)
T ss_dssp ----------EEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCE-EEEEEETTCHHHHHTHH
T ss_pred ----------EEEEEEEcCCcEEEEEEEECCCCh-------------HhhhhhHHHhhcCCE-EEEEEECCChHHHHHHH
Confidence 000111111122468999999932 334556678888875 45555555432222221
Q ss_pred HHH----HHh---CCCCCceEEeeecCCCCC
Q 003355 206 QIA----GIA---DPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 ~la----~~~---dp~g~rtIgVlTK~D~~~ 229 (827)
.+. ... ...+.++++|+||+|+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 222 211 225689999999999974
No 30
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.12 E-value=5.6e-11 Score=135.84 Aligned_cols=125 Identities=22% Similarity=0.251 Sum_probs=79.2
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
...|.|+|||.+|+|||||+|+|+|..+..+... .+|+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~----------------------------------------- 59 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTR----------------------------------------- 59 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC---------------------------------------------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcce-----------------------------------------
Confidence 4689999999999999999999999764211111 0111
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d 203 (827)
+.....+... ...+.||||||+.... ..+.+.++.++..|+..++ ++|+|+++...+...+
T Consensus 60 ------------~~~~~~~~~~-~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~il~VvD~~~~~~~~d 120 (456)
T 4dcu_A 60 ------------DRIYSSAEWL-NYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEAD-VIIFMVNGREGVTAAD 120 (456)
T ss_dssp -------------CEEEECTTC-SSCCEEECCCC-----------CCHHHHHHHHHHHHHHCS-EEEEEEESSSCSCHHH
T ss_pred ------------eEEEEEEEEC-CceEEEEECCCCCCcc-----hHHHHHHHHHHHhhHhhCC-EEEEEEeCCCCCChHH
Confidence 1111111111 1368999999987321 2345678888899999887 6777778777666665
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
..+++.+...+.++|+|+||+|+.+.
T Consensus 121 -~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 121 -EEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp -HHHHHHHTTCCSCEEEEEECC-----
T ss_pred -HHHHHHHHHcCCCEEEEEECccchhh
Confidence 57788888789999999999998753
No 31
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.12 E-value=2.1e-10 Score=110.97 Aligned_cols=116 Identities=12% Similarity=0.099 Sum_probs=55.1
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|+|..+-+....+.|.+..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR----------------------------------------- 40 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE-----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-----------------------------------------
Confidence 468999999999999999999987643222111111000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
.+.+ ......+.++||||.. ..+.+...|++..+.++++ .+.....+-.....
T Consensus 41 ------------~~~~-~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~~ 93 (166)
T 3q72_A 41 ------------SIVV-DGEEASLMVYDIWEQD-------------GGRWLPGHCMAMGDAYVIV-YSVTDKGSFEKASE 93 (166)
T ss_dssp ------------EEEE-TTEEEEEEEEECC----------------------------CCEEEEE-EETTCHHHHHHHHH
T ss_pred ------------EEEE-CCEEEEEEEEECCCCc-------------cchhhhhhhhhhCCEEEEE-EECCCHHHHHHHHH
Confidence 0000 0112357899999953 2334555688888755554 44443222222222
Q ss_pred H----HHHhCCCCCceEEeeecCCCCCC
Q 003355 207 I----AGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 207 l----a~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+ .+.....+.++++|+||+|+.+.
T Consensus 94 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 94 LRVQLRRARQTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp HHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred HHHHHHHhcCCCCCCEEEEEeccccccc
Confidence 2 22223346899999999999864
No 32
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.11 E-value=5.3e-10 Score=111.61 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=69.7
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
...++|+|+|..++|||||+|+|++..+....... |.....
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~-------------------------------------- 55 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNV-------------------------------------- 55 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEE--------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeE--------------------------------------
Confidence 45678999999999999999999998753211111 110000
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
. .+ . .....+.||||||... .+.+...|++..+ ++++|++++...+-...
T Consensus 56 -----------~--~~--~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d-~ii~v~D~~~~~s~~~~ 105 (199)
T 4bas_A 56 -----------E--TF--E-KGRVAFTVFDMGGAKK-------------FRGLWETYYDNID-AVIFVVDSSDHLRLCVV 105 (199)
T ss_dssp -----------E--EE--E-ETTEEEEEEEECCSGG-------------GGGGGGGGCTTCS-EEEEEEETTCGGGHHHH
T ss_pred -----------E--EE--E-eCCEEEEEEECCCCHh-------------HHHHHHHHHhcCC-EEEEEEECCcHHHHHHH
Confidence 0 00 0 1123689999999642 2344557888887 55555666544332222
Q ss_pred HHHHHHhCC-----------CCCceEEeeecCCCCCC
Q 003355 205 LQIAGIADP-----------DGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 l~la~~~dp-----------~g~rtIgVlTK~D~~~~ 230 (827)
......+.. .+.++|+|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 223322222 26899999999999864
No 33
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.11 E-value=2.8e-10 Score=113.79 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=69.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|++..+......+.+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~------------------------------------------ 63 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDF------------------------------------------ 63 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEE------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeE------------------------------------------
Confidence 45799999999999999999999875321111110000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH---
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d--- 203 (827)
....+.+. .....+.|+||||.. ....+...|++..+ ++++|.+++....-.+
T Consensus 64 ---------~~~~~~~~-~~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d-~iilV~D~~~~~s~~~~~~ 119 (192)
T 2il1_A 64 ---------KIKTVELR-GKKIRLQIWDTAGQE-------------RFNSITSAYYRSAK-GIILVYDITKKETFDDLPK 119 (192)
T ss_dssp ---------EEEEEEET-TEEEEEEEEEECCSG-------------GGHHHHHHHHHHCS-EEEEEEETTCHHHHHTHHH
T ss_pred ---------EEEEEEEC-CeEEEEEEEeCCCcH-------------HHHHHHHHHhcCCC-EEEEEEECcCHHHHHHHHH
Confidence 00011111 112358999999943 23455667888777 5555666654332222
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+..++...+.+.++++|+||+|+.+
T Consensus 120 ~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 120 WMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECccccc
Confidence 23455566666789999999999965
No 34
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.10 E-value=1.6e-10 Score=132.53 Aligned_cols=120 Identities=23% Similarity=0.262 Sum_probs=73.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccC-CCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~-~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
.+|+|||.+|+|||||||+|+|.++..+. ...+|+-++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~---------------------------------------- 283 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVIS---------------------------------------- 283 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCC----------------------------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEE----------------------------------------
Confidence 68999999999999999999998642221 1122322210
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCC-cCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGIT-KVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~-~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
..+.+. ...++||||||+. ..... ++..--.....|++..+ ++|+|++++......+ .
T Consensus 284 -----------~~i~~~---g~~~~l~DTaG~~~~~~~~-----ve~~gi~~~~~~~~~aD-~vl~VvD~s~~~s~~~-~ 342 (482)
T 1xzp_A 284 -----------EEIVIR---GILFRIVDTAGVRSETNDL-----VERLGIERTLQEIEKAD-IVLFVLDASSPLDEED-R 342 (482)
T ss_dssp -----------EEEEET---TEEEEEEESSCCCSSCCTT-----CCCCCHHHHHHHHHHCS-EEEEEEETTSCCCHHH-H
T ss_pred -----------EEEecC---CeEEEEEECCCccccchhh-----HHHHHHHHHHHHhhccc-EEEEEecCCCCCCHHH-H
Confidence 011221 1358999999987 43211 11111123346788776 6677777765544333 3
Q ss_pred HHHHHhCCCCCceEEeeecCCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+...+ .+.++|+|+||+|+.+.
T Consensus 343 ~il~~l--~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 343 KILERI--KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp HHHHHH--TTSSEEEEEEECSSCCC
T ss_pred HHHHHh--cCCCEEEEEECcccccc
Confidence 455555 36899999999999753
No 35
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.10 E-value=1.1e-10 Score=133.23 Aligned_cols=148 Identities=20% Similarity=0.175 Sum_probs=77.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCC-CccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~-g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
.+|+|+|.+|+|||||+|+|+|.++..... ..+|+-.+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~----------------------------------------- 263 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV----------------------------------------- 263 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHH-----------------------------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEE-----------------------------------------
Confidence 469999999999999999999975422211 11111110
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
...+.+. ...++||||||+.+.. ..++...-.....|+...+ ++|+|++++..+...+ ..
T Consensus 264 ----------~~~i~~~---g~~v~liDT~G~~~~~-----~~ve~~gi~~~~~~~~~aD-~vl~VvD~s~~~~~~~-~~ 323 (462)
T 3geh_A 264 ----------ESQLVVG---GIPVQVLDTAGIRETS-----DQVEKIGVERSRQAANTAD-LVLLTIDAATGWTTGD-QE 323 (462)
T ss_dssp ----------HHEEEET---TEEEEECC-------------------------CCCCSCS-EEEEEEETTTCSCHHH-HH
T ss_pred ----------EEEEEEC---CEEEEEEECCccccch-----hHHHHHHHHHHhhhhhcCC-EEEEEeccCCCCCHHH-HH
Confidence 0011111 1358999999985431 1112111223456777776 7777777776665544 45
Q ss_pred HHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCchhhhh
Q 003355 207 IAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMF 262 (827)
Q Consensus 207 la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~ 262 (827)
+.+.+.. .++|+|+||+|+....... .+ +.......++.+.++...+++.
T Consensus 324 i~~~l~~--~piivV~NK~Dl~~~~~~~--~~--~~~~~~~~~i~iSAktg~Gi~e 373 (462)
T 3geh_A 324 IYEQVKH--RPLILVMNKIDLVEKQLIT--SL--EYPENITQIVHTAAAQKQGIDS 373 (462)
T ss_dssp HHHHHTT--SCEEEEEECTTSSCGGGST--TC--CCCTTCCCEEEEBTTTTBSHHH
T ss_pred HHHhccC--CcEEEEEECCCCCcchhhH--HH--HHhccCCcEEEEECCCCCCHHH
Confidence 6666643 6999999999998643211 01 1111234567777776665543
No 36
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.10 E-value=8.4e-11 Score=134.72 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=61.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
.+|+|+|.+|+|||||+|+|+|.++..++.- .+|+-.+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~----------------------------------------- 272 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI----------------------------------------- 272 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-----------------------------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEE-----------------------------------------
Confidence 4699999999999999999999864222111 1111110
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch---H
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---d 203 (827)
...+.+. ...++||||||+.+.. ..++...-.....|+..++ ++|+|++++...... .
T Consensus 273 ----------~~~i~~~---g~~l~liDT~G~~~~~-----~~ve~~gi~~~~~~~~~aD-~vl~VvD~s~~~s~~~~~~ 333 (476)
T 3gee_A 273 ----------EECFIHD---KTMFRLTDTAGLREAG-----EEIEHEGIRRSRMKMAEAD-LILYLLDLGTERLDDELTE 333 (476)
T ss_dssp ----------CEEEEET---TEEEEEEC-------------------------CCCSSCS-EEEEEEETTTCSSGGGHHH
T ss_pred ----------EEEEEEC---CeEEEEEECCCCCcch-----hHHHHHHHHHHHhhcccCC-EEEEEEECCCCcchhhhHH
Confidence 0011111 1358999999986531 1112111233456788776 667777777655442 3
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
...+.+.+. +.++|+|+||+|+.+.
T Consensus 334 ~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 334 IRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp HHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred HHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 356666665 6899999999999864
No 37
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.09 E-value=2.1e-10 Score=121.18 Aligned_cols=117 Identities=21% Similarity=0.235 Sum_probs=73.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.++|+|+|.+|+|||||+|+|+|..+. .+.- .+|.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv------------------------------------------- 40 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTV------------------------------------------- 40 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCC-------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceE-------------------------------------------
Confidence 467999999999999999999998742 1110 0111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCccEEEeecCCCCcccchH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSD 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~d 203 (827)
+.....+... ...+.||||||..+..... .+ +.+...|+. .++ ++++|+++.....
T Consensus 41 ----------~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~----~~---e~v~~~~~~~~~~d-~ii~V~D~t~~~~--- 98 (258)
T 3a1s_A 41 ----------EKKEGVFTYK-GYTINLIDLPGTYSLGYSS----ID---EKIARDYLLKGDAD-LVILVADSVNPEQ--- 98 (258)
T ss_dssp ----------EEEEEEEEET-TEEEEEEECCCCSSCCSSS----HH---HHHHHHHHHHSCCS-EEEEEEETTSCHH---
T ss_pred ----------EEEEEEEEEC-CeEEEEEECCCcCccCCCC----HH---HHHHHHHHhhcCCC-EEEEEeCCCchhh---
Confidence 0111111111 2368999999987543211 11 234556664 555 6667777665322
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+.+..++...+.++|+|+||+|+.+
T Consensus 99 ~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 99 SLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 24566666667899999999999864
No 38
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.07 E-value=5e-10 Score=112.54 Aligned_cols=167 Identities=16% Similarity=0.184 Sum_probs=95.4
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+.+......+ +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~-------------------------------------- 45 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG---IDF-------------------------------------- 45 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCS---EEE--------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc---eeE--------------------------------------
Confidence 356899999999999999999999876322111000 000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~- 204 (827)
....+.+ ......+.||||||.. ..+.+...|++..+ ++++|.++.....-...
T Consensus 46 ----------~~~~~~~-~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~ 100 (203)
T 1zbd_A 46 ----------KVKTIYR-NDKRIKLQIWDTAGLE-------------RYRTITTAYYRGAM-GFILMYDITNEESFNAVQ 100 (203)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEEECCSG-------------GGHHHHHTTGGGCS-EEEEEEETTCHHHHHHHH
T ss_pred ----------EEEEEEE-CCeEEEEEEEECCCch-------------hhcchHHHhhcCCC-EEEEEEECcCHHHHHHHH
Confidence 0000111 0112368999999964 23456678888887 55555565543222222
Q ss_pred --HHHHHHhCCCCCceEEeeecCCCCCCcccHHHhhccccccccceEEEEEcCCchhhhhhhhHHHHHHHHHhhccCCCc
Q 003355 205 --LQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPV 282 (827)
Q Consensus 205 --l~la~~~dp~g~rtIgVlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~ 282 (827)
+..+......+.++|+|+||+|+.+...... + ....+..+.. -+.
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~----------------------~-------~~~~~~~~~~----~~~ 147 (203)
T 1zbd_A 101 DWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSS----------------------E-------RGRQLADHLG----FEF 147 (203)
T ss_dssp HHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCH----------------------H-------HHHHHHHHHT----CEE
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCcccccCH----------------------H-------HHHHHHHHCC----CeE
Confidence 2333444445789999999999975321100 0 0001111111 012
Q ss_pred c-ccccccCCchHHHHHHHHHHHHHHHhhc
Q 003355 283 Y-NGLADRCGVPQLAKKLNQILVQHIKAIL 311 (827)
Q Consensus 283 ~-~~~~~~~Gi~~L~~~L~~~L~~~I~~~L 311 (827)
+ .+.....|+..|...|.+.+.+.+...+
T Consensus 148 ~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~ 177 (203)
T 1zbd_A 148 FEASAKDNINVKQTFERLVDVICEKMSESL 177 (203)
T ss_dssp EECBTTTTBSSHHHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 2 3455678999999988888777766554
No 39
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.07 E-value=2.4e-10 Score=111.90 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=24.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
..++|+|+|..++|||||+|+|++..+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~ 34 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTF 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC-
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999999999875
No 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.07 E-value=8.9e-10 Score=107.65 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=24.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
...+|+|+|..++|||||+|+|++..+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 32 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKF 32 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC
Confidence 346899999999999999999998865
No 41
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.07 E-value=2.1e-10 Score=130.28 Aligned_cols=123 Identities=22% Similarity=0.242 Sum_probs=76.8
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
.|.|++||.+|+|||||+|+|+|..+..+... .+||-.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~----------------------------------------- 41 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDR----------------------------------------- 41 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------C-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccce-----------------------------------------
Confidence 58999999999999999999999764211111 111111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
+...+... ...+.||||||+.... .++.+.++.++..|+..++ ++|+|+++.......+ .
T Consensus 42 ------------~~~~~~~~-~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~il~vvD~~~~~~~~d-~ 101 (436)
T 2hjg_A 42 ------------IYSSAEWL-NYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEAD-VIIFMVNGREGVTAAD-E 101 (436)
T ss_dssp ------------EEEECTTC-SSCCEEEC--------------CHHHHHHHHHHHHHHHCS-EEEEEEETTTCSCHHH-H
T ss_pred ------------EEEEEEEC-CceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCC-EEEEEEeCCCCCCHHH-H
Confidence 11111111 1258999999986331 2366778888899999887 6777778777666555 4
Q ss_pred HHHHHhCCCCCceEEeeecCCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+++.+...+.++|+|+||+|+.+.
T Consensus 102 ~~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 102 EVAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHHHHTTCCSCEEEEEECCCC---
T ss_pred HHHHHHHHcCCCEEEEEECccCccc
Confidence 6777777788999999999999754
No 42
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.07 E-value=8.9e-10 Score=111.32 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=69.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..++|+|+|..++|||||+|+|++..+.+......+.....
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 59 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI--------------------------------------- 59 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEE---------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE---------------------------------------
Confidence 46799999999999999999999887633221111111100
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch---
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--- 202 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--- 202 (827)
..+.+. .....+.||||||.... ..+...|+...+ ++++|+++.....-.
T Consensus 60 ------------~~~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~ 112 (213)
T 3cph_A 60 ------------KTVDIN-GKKVKLQLWDTAGQERF-------------RTITTAYYRGAM-GIILVYDVTDERTFTNIK 112 (213)
T ss_dssp ------------EEEEET-TEEEEEEEECCTTGGGG-------------TCCCHHHHTTCS-EEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEC-CEEEEEEEEeCCCcHHH-------------HHHHHHHhccCC-EEEEEEECCCHHHHHHHH
Confidence 011110 01135899999995422 233456788887 455555555432211
Q ss_pred HHHHHHHHhCCCCCceEEeeecCCCC
Q 003355 203 DALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 203 d~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
..+..+....+.+.++|+|+||+|+.
T Consensus 113 ~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 113 QWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp HHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 22344444455578999999999994
No 43
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.07 E-value=3.7e-10 Score=111.70 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=43.4
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHH---HHHhC-CCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI---AGIAD-PDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~l---a~~~d-p~g~rtIgVlTK 224 (827)
.+.|+||||.. ....+...|++..+ ++++|+++....+-.+...+ +.... ..+.++++|+||
T Consensus 71 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 136 (195)
T 3bc1_A 71 HLQLWDTAGLE-------------RFRSLTTAFFRDAM-GFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNK 136 (195)
T ss_dssp EEEEEEECCSG-------------GGHHHHHHTTTTCS-EEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEEC
T ss_pred EEEEEeCCCcH-------------HHHHHHHHHHcCCC-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 68999999963 23456778898887 55555666544333222222 22222 256899999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
+|+.+
T Consensus 137 ~Dl~~ 141 (195)
T 3bc1_A 137 SDLED 141 (195)
T ss_dssp TTCGG
T ss_pred ccccc
Confidence 99975
No 44
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.07 E-value=3.1e-10 Score=113.04 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=39.6
Q ss_pred cCCCCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 18 AVPLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 18 ~~~~~~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
...+...+-.+.+.+.+++........-..++|+|+|..|+|||||+|+|++..+
T Consensus 19 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 19 GSINKRKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CBTTTTBCHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3446777778888888777666554455778999999999999999999999875
No 45
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.07 E-value=5.1e-10 Score=111.39 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=40.8
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCC-CCCceEEeeecCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADP-DGYRTIGIITKLD 226 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp-~g~rtIgVlTK~D 226 (827)
..+.||||||.... ..+...|++..+ ++++|+++.....-.+...+...+.. .+.++++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d-~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERY-------------ASIVPLYYRGAT-CAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGC-------------TTTHHHHHTTCS-EEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHH-------------HHHHHHHhcCCC-EEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 46899999995322 234557888887 56666676654333332233322221 2389999999999
No 46
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.06 E-value=1e-09 Score=111.55 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=46.3
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCC----CCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADP----DGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp----~g~rtIgVlTK 224 (827)
.+.||||||. +....+...|++..+ ++++|+++.....-.....+...+.. .+.++|+|+||
T Consensus 85 ~l~l~Dt~G~-------------~~~~~~~~~~~~~~d-~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK 150 (217)
T 2f7s_A 85 HLQLWDTAGQ-------------ERFRSLTTAFFRDAM-GFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNK 150 (217)
T ss_dssp EEEEEEEESH-------------HHHHHHHHHHHTTCC-EEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEEC
T ss_pred EEEEEECCCc-------------HhHHhHHHHHhcCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEEC
Confidence 5899999992 345667788999887 55556666554333333445555543 46889999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
+|+.+
T Consensus 151 ~Dl~~ 155 (217)
T 2f7s_A 151 ADLPD 155 (217)
T ss_dssp TTCGG
T ss_pred Ccccc
Confidence 99965
No 47
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.06 E-value=2.9e-10 Score=111.50 Aligned_cols=119 Identities=15% Similarity=0.125 Sum_probs=68.8
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|++..+.+.....++-.....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~--------------------------------------- 50 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRN--------------------------------------- 50 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEE---------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEE---------------------------------------
Confidence 45899999999999999999999876432222111111000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch---H
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---d 203 (827)
..+.+. .....+.|+||||.. ..+.+...|+...+ ++++|.++.....-. .
T Consensus 51 -----------~~~~~~-~~~~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~ 104 (180)
T 2g6b_A 51 -----------KVLDVD-GVKVKLQMWDTAGQE-------------RFRSVTHAYYRDAH-ALLLLYDVTNKASFDNIQA 104 (180)
T ss_dssp -----------EEEEET-TEEEEEEEEECCCC---------------------CCGGGCS-EEEEEEETTCHHHHHTHHH
T ss_pred -----------EEEEEC-CEEEEEEEEeCCCcH-------------HHHHHHHHHccCCC-EEEEEEECCCHHHHHHHHH
Confidence 000110 011358999999943 23455667888887 455555655432222 2
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+..+....+.+.++++|+||+|+.+.
T Consensus 105 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 105 WLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp HHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 234444555567899999999999863
No 48
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.06 E-value=3.2e-10 Score=120.35 Aligned_cols=118 Identities=22% Similarity=0.280 Sum_probs=71.6
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCc-cccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~-~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
..++|+|+|.+|+|||||+|+|+|..+ +.+.-. +|..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~----------------------------------------- 39 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVE----------------------------------------- 39 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCE-----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEE-----------------------------------------
Confidence 357899999999999999999999864 322111 1110
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHh--cCCccEEEeecCCCCcccch
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYI--KQPSCLILAVTPANSDLANS 202 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi--~~~~~iIL~V~~a~~d~~~~ 202 (827)
.....+... ...+.||||||+.+..... .. ..+...|+ .+++ ++++|+++....
T Consensus 40 ------------~~~~~~~~~-~~~~~l~DtpG~~~~~~~~----~~---~~~~~~~~~~~~~d-~vi~v~D~~~~~--- 95 (271)
T 3k53_A 40 ------------KKEGIMEYR-EKEFLVVDLPGIYSLTAHS----ID---ELIARNFILDGNAD-VIVDIVDSTCLM--- 95 (271)
T ss_dssp ------------EEEEEEEET-TEEEEEEECCCCSCCCSSC----HH---HHHHHHHHHTTCCS-EEEEEEEGGGHH---
T ss_pred ------------eeEEEEEEC-CceEEEEeCCCccccccCC----HH---HHHHHHhhhccCCc-EEEEEecCCcch---
Confidence 001111111 1248999999987543221 11 23445666 3555 666666666532
Q ss_pred HHHHHHHHhCCCC-CceEEeeecCCCCC
Q 003355 203 DALQIAGIADPDG-YRTIGIITKLDIMD 229 (827)
Q Consensus 203 d~l~la~~~dp~g-~rtIgVlTK~D~~~ 229 (827)
..+.+..++...+ .++++|+||+|+.+
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 96 RNLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred hhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 2234444444445 89999999999864
No 49
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.06 E-value=1.8e-09 Score=106.49 Aligned_cols=116 Identities=20% Similarity=0.255 Sum_probs=66.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.+|+|+|..++|||||+|+|++..+...... ++......
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~---------------------------------------- 43 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDP-TIEDSYRK---------------------------------------- 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCCCT-TCCEEEEE----------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-CchheEEE----------------------------------------
Confidence 4799999999999999999998875322211 11111000
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~--- 204 (827)
.+.+ ......+.|+||||... ...+...|+...+ ++++|.+++....-...
T Consensus 44 -----------~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~ 97 (189)
T 4dsu_A 44 -----------QVVI-DGETCLLDILDTAGQEE-------------YSAMRDQYMRTGE-GFLCVFAINNTKSFEDIHHY 97 (189)
T ss_dssp -----------EEEE-TTEEEEEEEEECCCC----------------CTTHHHHHHHCS-EEEEEEETTCHHHHHHHHHH
T ss_pred -----------EEEE-CCcEEEEEEEECCCcHH-------------HHHHHHHHHhcCC-EEEEEEECCCHHHHHHHHHH
Confidence 0000 01112478999999542 2334556777777 44555555443221121
Q ss_pred H-HHHHHhCCCCCceEEeeecCCCCCC
Q 003355 205 L-QIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 l-~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+ .+.......+.++++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred HHHHHHhcCCCCCcEEEEEECccCccc
Confidence 2 2333344457899999999999853
No 50
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.06 E-value=1.3e-09 Score=108.25 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=63.1
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
-.+|+|+|..++|||||+|+|++..+.+.... ++......
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~--------------------------------------- 60 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP-TIEDSYRK--------------------------------------- 60 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCCCT-TCCEEEEE---------------------------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccccCC-ccceEEEE---------------------------------------
Confidence 35799999999999999999998865322111 11111000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH--
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~-- 204 (827)
.+.+. .....+.||||||.. ....+...|+...+.+| +|.++.....-.+.
T Consensus 61 ------------~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 113 (190)
T 3con_A 61 ------------QVVID-GETCLLDILDTAGQE-------------EYSAMRDQYMRTGEGFL-CVFAINNSKSFADINL 113 (190)
T ss_dssp ------------EEEET-TEEEEEEEEECCC------------------------CTTCSEEE-EEEETTCHHHHHHHHH
T ss_pred ------------EEEEC-CEEEEEEEEECCChH-------------HHHHHHHHhhCcCCEEE-EEEECcCHHHHHHHHH
Confidence 00110 011358999999943 23445567888887554 55555443322222
Q ss_pred -HHHHHH-hCCCCCceEEeeecCCCCC
Q 003355 205 -LQIAGI-ADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 -l~la~~-~dp~g~rtIgVlTK~D~~~ 229 (827)
+..+.. ....+.++++|+||+|+.+
T Consensus 114 ~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 114 YREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 222222 2334689999999999976
No 51
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.06 E-value=5.7e-10 Score=108.01 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=67.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.+|+|+|..++|||||+|+|++..+.+......+.....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 42 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI----------------------------------------- 42 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEE-----------------------------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEE-----------------------------------------
Confidence 579999999999999999999887632211111110000
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch---HH
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DA 204 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---d~ 204 (827)
..+.+. .....+.|+||||.... ..+...|++..+ ++++|.++.....-. ..
T Consensus 43 ----------~~~~~~-~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~ 97 (170)
T 1g16_A 43 ----------KTVDIN-GKKVKLQIWDTAGQERF-------------RTITTAYYRGAM-GIILVYDITDERTFTNIKQW 97 (170)
T ss_dssp ----------EEEESS-SCEEEEEEECCTTGGGT-------------SCCCHHHHTTEE-EEEEEEETTCHHHHHTHHHH
T ss_pred ----------EEEEEC-CEEEEEEEEeCCCChhh-------------hhhHHHHhccCC-EEEEEEECCCHHHHHHHHHH
Confidence 000100 01135899999995432 223446777776 555566665432221 22
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+..+......+.++++|+||+|+.+
T Consensus 98 ~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 98 FKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHhcCCCCcEEEEEECccCCc
Confidence 3334444445789999999999943
No 52
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.06 E-value=7.2e-10 Score=110.34 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=72.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+.+......|....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 54 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK---------------------------------------- 54 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEE----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEE----------------------------------------
Confidence 3468999999999999999999988753222111111110
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccc---h
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---S 202 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~ 202 (827)
...+.+. .....+.|+||||... ...+...|+...+ ++++|.++.....- .
T Consensus 55 -----------~~~~~~~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 108 (196)
T 3tkl_A 55 -----------IRTIELD-GKTIKLQIWDTAGQER-------------FRTITSSYYRGAH-GIIVVYDVTDQESFNNVK 108 (196)
T ss_dssp -----------EEEEEET-TEEEEEEEEEECCSGG-------------GCTTHHHHHTTCS-EEEEEEETTCHHHHHTHH
T ss_pred -----------EEEEEEC-CEEEEEEEEECCCcHh-------------hhhhHHHHHhhCC-EEEEEEECcCHHHHHHHH
Confidence 0011110 0112589999999532 2334557888887 55555555543221 1
Q ss_pred HHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 203 DALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 203 d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
..+..+......+.++|+|+||+|+.+.
T Consensus 109 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 109 QWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 2234455555567899999999999764
No 53
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.06 E-value=2.5e-10 Score=113.90 Aligned_cols=117 Identities=18% Similarity=0.163 Sum_probs=68.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|++..+.+....+.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~------------------------------------------ 58 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF------------------------------------------ 58 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSE------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee------------------------------------------
Confidence 34799999999999999999998875322111111000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH---
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d--- 203 (827)
....+.+. .....+.|+||||...- +.+...|++..+. +++|.++.....-.+
T Consensus 59 ---------~~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~ 114 (191)
T 2a5j_A 59 ---------GARMVNID-GKQIKLQIWDTAGQESF-------------RSITRSYYRGAAG-ALLVYDITRRETFNHLTS 114 (191)
T ss_dssp ---------EEEEEEET-TEEEEEEEECCTTGGGT-------------SCCCHHHHTTCSE-EEEEEETTCHHHHHTHHH
T ss_pred ---------EEEEEEEC-CEEEEEEEEECCCchhh-------------hhhHHHHhccCCE-EEEEEECCCHHHHHHHHH
Confidence 00011111 01135899999995422 2234567888774 455555554322222
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+..+......+.++++|+||+|+.+
T Consensus 115 ~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 115 WLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHhcCCCCCEEEEEECcccCC
Confidence 23334444455789999999999974
No 54
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.06 E-value=8.5e-10 Score=117.03 Aligned_cols=126 Identities=16% Similarity=0.206 Sum_probs=72.4
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
...++|+|+|..|+|||||+|+|+|..+.+.+.. .+|+.+...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~------------------------------------ 80 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMV------------------------------------ 80 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEE------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEE------------------------------------
Confidence 3467999999999999999999999886443322 222222111
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCccEEEeecCCCC-ccc
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANS-DLA 200 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~-d~~ 200 (827)
.+.. ....++||||||+.+....+ ..+...+..|+. ..+ ++|+|++.+. .+.
T Consensus 81 -----------------~~~~-~~~~l~iiDTpG~~~~~~~~------~~~~~~i~~~~~~~~~d-~il~v~~~d~~~~~ 135 (270)
T 1h65_A 81 -----------------SRSR-AGFTLNIIDTPGLIEGGYIN------DMALNIIKSFLLDKTID-VLLYVDRLDAYRVD 135 (270)
T ss_dssp -----------------EEEE-TTEEEEEEECCCSEETTEEC------HHHHHHHHHHTTTCEEC-EEEEEEESSCCCCC
T ss_pred -----------------EEee-CCeEEEEEECCCCCCCccch------HHHHHHHHHHhhcCCCC-EEEEEEeCCCCcCC
Confidence 1111 12368999999986542111 123334455654 344 5555544332 343
Q ss_pred chH--HHHHHHHhCCC--CCceEEeeecCCCCCCc
Q 003355 201 NSD--ALQIAGIADPD--GYRTIGIITKLDIMDRG 231 (827)
Q Consensus 201 ~~d--~l~la~~~dp~--g~rtIgVlTK~D~~~~~ 231 (827)
..+ .+..+...... ..++|+|+||+|+.++.
T Consensus 136 ~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 136 NLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 333 22333322121 25899999999998643
No 55
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.05 E-value=2.5e-10 Score=110.52 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=70.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|++..+.+....... .. .
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~--~--------------------------------------- 43 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG-AS--F--------------------------------------- 43 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCS-EE--E---------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcee-EE--E---------------------------------------
Confidence 35799999999999999999999875322111000 00 0
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH--
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~-- 204 (827)
....+.+ ......+.|+||||..+ ...+...|+...+ ++++|.+++....-...
T Consensus 44 ---------~~~~~~~-~~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1z0j_A 44 ---------MTKTVQY-QNELHKFLIWDTAGLER-------------FRALAPMYYRGSA-AAIIVYDITKEETFSTLKN 99 (170)
T ss_dssp ---------EEEEEEE-TTEEEEEEEEEECCSGG-------------GGGGTHHHHTTCS-EEEEEEETTCHHHHHHHHH
T ss_pred ---------EEEEEEE-CCeEEEEEEEcCCCchh-------------hhcccHhhCcCCC-EEEEEEECcCHHHHHHHHH
Confidence 0000111 01123589999999742 2344556888887 45555565544332222
Q ss_pred -HHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 205 -LQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 -l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+..+........++++|+||+|+.+.
T Consensus 100 ~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 100 WVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp HHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred HHHHHHHhCCCCCcEEEEEECCccccc
Confidence 33344444556889999999999753
No 56
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.05 E-value=7.4e-10 Score=106.55 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=41.7
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH----HHHHHHhCCCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA----LQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~----l~la~~~dp~g~rtIgVlTK 224 (827)
.+.|+||||... ...+...|+...+.++ +|.++.....-... ..+.+.....+.++++|+||
T Consensus 52 ~~~l~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 117 (167)
T 1kao_A 52 VLEILDTAGTEQ-------------FASMRDLYIKNGQGFI-LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117 (167)
T ss_dssp EEEEEECCCTTC-------------CHHHHHHHHHHCSEEE-EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred EEEEEECCCchh-------------hHHHHHHHhccCCEEE-EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 489999999542 2334556777777444 45555432221111 23444445567999999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
+|+.+
T Consensus 118 ~Dl~~ 122 (167)
T 1kao_A 118 VDLES 122 (167)
T ss_dssp GGGGG
T ss_pred Ccccc
Confidence 99874
No 57
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.05 E-value=5e-10 Score=107.86 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=68.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|++..+. .....++......
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~--------------------------------------- 43 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRK--------------------------------------- 43 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEE---------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCCcceEEEE---------------------------------------
Confidence 357999999999999999999988752 2222111111000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH--
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~-- 204 (827)
.+.+ ......+.|+||||.. ....+...|+...+.+| +|.++.....-...
T Consensus 44 ------------~~~~-~~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 96 (168)
T 1u8z_A 44 ------------KVVL-DGEEVQIDILDTAGQE-------------DYAAIRDNYFRSGEGFL-CVFSITEMESFAATAD 96 (168)
T ss_dssp ------------EEEE-TTEEEEEEEEECCC----------------CHHHHHHHHHHCSEEE-EEEETTCHHHHHHHHH
T ss_pred ------------EEEE-CCEEEEEEEEECCCcc-------------hhHHHHHHHhhcCCEEE-EEEECCCHHHHHHHHH
Confidence 0000 0011258999999943 23345667888777544 45555433221121
Q ss_pred --HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 --LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 --l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..+.......+.++++|+||+|+.+
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCCcEEEEEECccccc
Confidence 1233344445789999999999975
No 58
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.05 E-value=1.7e-09 Score=104.23 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=43.8
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHh----CCCCCceEEeee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGIIT 223 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~----dp~g~rtIgVlT 223 (827)
..+.|+||||.. ..+.+...|+...+.+ ++|.+++...+-.........+ ...+.++++|+|
T Consensus 44 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 109 (164)
T 1r8s_A 44 ISFTVWDVGGQD-------------KIRPLWRHYFQNTQGL-IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 109 (164)
T ss_dssp CEEEEEECCCCG-------------GGHHHHHHHTTTCSEE-EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EEEEEEEcCCCh-------------hhHHHHHHHhccCCEE-EEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEE
Confidence 368999999964 2345666788888754 4555655442222222333322 223689999999
Q ss_pred cCCCCCC
Q 003355 224 KLDIMDR 230 (827)
Q Consensus 224 K~D~~~~ 230 (827)
|+|+.+.
T Consensus 110 K~Dl~~~ 116 (164)
T 1r8s_A 110 KQDLPNA 116 (164)
T ss_dssp CTTSTTC
T ss_pred CcCCcCC
Confidence 9999764
No 59
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.04 E-value=9.3e-10 Score=108.21 Aligned_cols=118 Identities=17% Similarity=0.219 Sum_probs=69.9
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
....+|+|+|..++|||||+|+|++..+. .....++......
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~------------------------------------- 57 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRK------------------------------------- 57 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCTTCCEEEEE-------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC-CcCCCccceEEEE-------------------------------------
Confidence 34568999999999999999999988753 2222122111100
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
.+.+. .....+.|+||||... ...+...|+...+.+ ++|.++.....-...
T Consensus 58 --------------~~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~ 108 (187)
T 2a9k_A 58 --------------KVVLD-GEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGF-LCVFSITEMESFAAT 108 (187)
T ss_dssp --------------EEEET-TEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEE-EEEEETTCHHHHHHH
T ss_pred --------------EEEEC-CEEEEEEEEECCCCcc-------------cHHHHHHHhccCCEE-EEEEECcCHHHHHHH
Confidence 00000 0112589999999542 234556778877744 455555432221121
Q ss_pred ----HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 ----LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 ----l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..+.......+.++++|+||+|+.+
T Consensus 109 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 109 ADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp HHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1333444445789999999999975
No 60
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.04 E-value=5.8e-10 Score=108.90 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=71.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+...... ++....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~---------------------------------------- 52 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPH-TIGVEF---------------------------------------- 52 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTT-SCCCCE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ccceEE----------------------------------------
Confidence 356899999999999999999998875321111 110000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH--
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-- 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d-- 203 (827)
....+.+. .....+.|+||||... .+.+...|++..+ ++++|.+++....-.+
T Consensus 53 ----------~~~~~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 107 (179)
T 1z0f_A 53 ----------GTRIIEVS-GQKIKLQIWDTAGQER-------------FRAVTRSYYRGAA-GALMVYDITRRSTYNHLS 107 (179)
T ss_dssp ----------EEEEEEET-TEEEEEEEEECTTGGG-------------TCHHHHHHHHTCS-EEEEEEETTCHHHHHTHH
T ss_pred ----------EEEEEEEC-CeEEEEEEEECCCChH-------------hhhhHHHHhccCC-EEEEEEeCcCHHHHHHHH
Confidence 00011110 0123589999999432 2345667888887 4555566654432222
Q ss_pred -HHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 -ALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 -~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+..++.....+.++++|+||+|+.+
T Consensus 108 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 108 SWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECccccc
Confidence 22334455555789999999999964
No 61
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.04 E-value=3.8e-10 Score=120.12 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=72.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
.++|+++|.+|+|||||+|+|+|..+.......+|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~------------------------------------------- 39 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE------------------------------------------- 39 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS-------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE-------------------------------------------
Confidence 4689999999999999999999986421111111111
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCccEEEeecCCCCcccchHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~d~ 204 (827)
.....+.. ...+.||||||..+..... .-+.+...|+. .++ ++++|+++..... .
T Consensus 40 ----------~~~~~~~~--~~~l~l~DtpG~~~~~~~~-------~~e~v~~~~~~~~~~d-~vi~V~D~t~~e~---~ 96 (272)
T 3b1v_A 40 ----------RKSGLVKK--NKDLEIQDLPGIYSMSPYS-------PEAKVARDYLLSQRAD-SILNVVDATNLER---N 96 (272)
T ss_dssp ----------CEEEECTT--CTTEEEEECCCCSCSSCSS-------HHHHHHHHHHHTTCCS-EEEEEEEGGGHHH---H
T ss_pred ----------EEEEEEec--CCeEEEEECCCcCccCCCC-------hHHHHHHHHHhcCCCC-EEEEEecCCchHh---H
Confidence 11111111 2368999999987543211 12345566776 455 6667777654221 2
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+.+..++...+.++|+|+||+|+..
T Consensus 97 ~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 97 LYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp HHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEChhhCC
Confidence 3444555446899999999999864
No 62
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.03 E-value=1e-09 Score=106.79 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.6
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
..+|+|+|..++|||||+|+|+|..+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~ 29 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQE 29 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC--
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCC
Confidence 46899999999999999999999875
No 63
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.03 E-value=2e-09 Score=103.15 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.+|+|+|..|+|||||+|+|++..+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~ 28 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF 28 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC
Confidence 3699999999999999999998865
No 64
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.03 E-value=1.5e-09 Score=104.67 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.+|+|+|..++|||||+|+|++..+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~ 28 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF 28 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4799999999999999999998765
No 65
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.03 E-value=5.5e-10 Score=109.25 Aligned_cols=117 Identities=19% Similarity=0.239 Sum_probs=69.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..++|+|+|..++|||||+|+|++..+.+ ....+|......
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~-------------------------------------- 48 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVS-DYDPTIEDSYTK-------------------------------------- 48 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCS-SCCTTCCEEEEE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCCcCceEEE--------------------------------------
Confidence 45689999999999999999999886522 222122111000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~- 204 (827)
.+.+. .....+.|+||||.... ..+...|+...+.+ ++|.++.....-...
T Consensus 49 -------------~~~~~-~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~ 100 (181)
T 2fn4_A 49 -------------ICSVD-GIPARLDILDTAGQEEF-------------GAMREQYMRAGHGF-LLVFAINDRQSFNEVG 100 (181)
T ss_dssp -------------EEEET-TEEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEE-EEEEETTCHHHHHHHH
T ss_pred -------------EEEEC-CEEEEEEEEECCCchhh-------------HHHHHHHHhhCCEE-EEEEeCCCHHHHHHHH
Confidence 00000 01135889999996432 12334567777644 455555543221221
Q ss_pred ---HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 ---LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 ---l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..+.+.....+.++++|+||+|+.+
T Consensus 101 ~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 101 KLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1333455566789999999999975
No 66
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.03 E-value=4.4e-10 Score=108.66 Aligned_cols=117 Identities=16% Similarity=0.203 Sum_probs=69.2
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.+|+|+|..++|||||+|+|++..+.+....+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~------------------------------------------- 40 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF------------------------------------------- 40 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE-------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-------------------------------------------
Confidence 4799999999999999999998875322111111000
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH-
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ- 206 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~- 206 (827)
....+.+ ......+.|+||||... ...+...|++..+ ++++|.+++....-.+...
T Consensus 41 --------~~~~~~~-~~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~ 97 (170)
T 1ek0_A 41 --------LTQRVTI-NEHTVKFEIWDTAGQER-------------FASLAPXYYRNAQ-AALVVYDVTKPQSFIKARHW 97 (170)
T ss_dssp --------EEEEEEE-TTEEEEEEEEEECCSGG-------------GGGGHHHHHTTCS-EEEEEEETTCHHHHHHHHHH
T ss_pred --------EEEEEEE-CCEEEEEEEEECCCChh-------------hhhhhhhhhccCc-EEEEEEecCChHHHHHHHHH
Confidence 0001111 01123589999999532 2344567888887 5555566554433222222
Q ss_pred --HHHHhCCCCCceEEeeecCCCCCC
Q 003355 207 --IAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 207 --la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
........+.++++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 98 VKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred HHHHHHhcCCCCcEEEEEECCCcccc
Confidence 223333456889999999999754
No 67
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.03 E-value=9.7e-10 Score=108.42 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=71.1
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|++..+.+......+....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 48 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFG----------------------------------------- 48 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEE-----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE-----------------------------------------
Confidence 468999999999999999999988753222111110000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH--
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~-- 204 (827)
...+.+. .....+.|+||||.. ....+...|+...+ ++++|.++.....-...
T Consensus 49 ----------~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~ 103 (186)
T 2bme_A 49 ----------SKIINVG-GKYVKLQIWDTAGQE-------------RFRSVTRSYYRGAA-GALLVYDITSRETYNALTN 103 (186)
T ss_dssp ----------EEEEEET-TEEEEEEEEEECCSG-------------GGHHHHHTTSTTCS-EEEEEEETTCHHHHHTHHH
T ss_pred ----------EEEEEEC-CEEEEEEEEeCCCcH-------------HHHHHHHHHHhcCC-EEEEEEECcCHHHHHHHHH
Confidence 0001110 011258999999943 23456778888887 45555555543222222
Q ss_pred -HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 -LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 -l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+..+......+.++++|+||+|+.+
T Consensus 104 ~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 104 WLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECccccc
Confidence 2333444556789999999999964
No 68
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.03 E-value=2e-10 Score=112.23 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=68.7
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
-.+|+|+|..++|||||+|+|++..+.+......+.....
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 53 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS---------------------------------------- 53 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEE----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEE----------------------------------------
Confidence 3589999999999999999999876532221111111000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH---
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d--- 203 (827)
..+.+. .....+.|+||||... ...+...|+...+ ++++|.+++....-..
T Consensus 54 -----------~~~~~~-~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~ 107 (179)
T 2y8e_A 54 -----------KTMYLE-DRTVRLQLWDTAGQER-------------FRSLIPSYIRDST-VAVVVYDITNTNSFHQTSK 107 (179)
T ss_dssp -----------EEEEET-TEEEEEEEEEECCSGG-------------GGGGSHHHHHTCS-EEEEEEETTCHHHHHTHHH
T ss_pred -----------EEEEEC-CeEEEEEEEECCCcHH-------------HHHHHHHHhcCCC-EEEEEEECCCHHHHHHHHH
Confidence 001110 0112589999999532 2234556788877 4555556554322112
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+..+....+.+.++++|+||+|+.+.
T Consensus 108 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 108 WIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp HHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECCccccc
Confidence 222233333456889999999999753
No 69
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.03 E-value=4.7e-10 Score=110.09 Aligned_cols=119 Identities=14% Similarity=0.164 Sum_probs=69.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+.+......+.. +
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------~--------------------------- 49 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA--------------F--------------------------- 49 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCS--------------E---------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeE--------------E---------------------------
Confidence 34589999999999999999999887532211100000 0
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~- 204 (827)
....+.+. .....+.|+||||... .+.+...|++..+ ++++|.+++....-...
T Consensus 50 ----------~~~~~~~~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 104 (181)
T 2efe_B 50 ----------FSQTLAVN-DATVKFEIWDTAGQER-------------YHSLAPMYYRGAA-AAIIVFDVTNQASFERAK 104 (181)
T ss_dssp ----------EEEEEEET-TEEEEEEEEECCCSGG-------------GGGGTHHHHTTCS-EEEEEEETTCHHHHHHHH
T ss_pred ----------EEEEEEEC-CEEEEEEEEeCCCChh-------------hhhhhHHHhccCC-EEEEEEECCCHHHHHHHH
Confidence 00011110 0123689999999532 2334556888887 55556666544332222
Q ss_pred --HHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 205 --LQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 --l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+..+......+.++++|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 105 KWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 22333333346889999999999753
No 70
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.03 E-value=6.3e-10 Score=109.94 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=69.7
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|++..+ .. ...+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~-------------~~~t~--------------------------------- 53 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV-VH-------------TSPTI--------------------------------- 53 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC-EE-------------EECCS---------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-Cc-------------cCCcC---------------------------------
Confidence 45799999999999999999999864 00 00000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
++. ...+.+. ...+.|+||||..+. +.+...|++..+ ++++|++++...+-..+..
T Consensus 54 -----~~~--~~~~~~~---~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d-~ii~v~D~~~~~s~~~~~~ 109 (181)
T 2h17_A 54 -----GSN--VEEIVIN---NTRFLMWDIGGQESL-------------RSSWNTYYTNTE-FVIVVVDSTDRERISVTRE 109 (181)
T ss_dssp -----SSS--CEEEEET---TEEEEEEEESSSGGG-------------TCGGGGGGTTCC-EEEEEEETTCTTTHHHHHH
T ss_pred -----cee--eEEEEEC---CEEEEEEECCCCHhH-------------HHHHHHHhccCC-EEEEEEECCCHHHHHHHHH
Confidence 000 0112221 246899999997432 233457888887 5555666655433333323
Q ss_pred HHHHh-C---CCCCceEEeeecCCCCCC
Q 003355 207 IAGIA-D---PDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 207 la~~~-d---p~g~rtIgVlTK~D~~~~ 230 (827)
....+ . ..+.++|+|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 110 ELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 33222 2 357899999999999763
No 71
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.02 E-value=2.6e-09 Score=118.35 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=75.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..|.|+++|.+|||||||+|+|+|..+...+.-.+|+-|+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~--------------------------------------- 218 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKR--------------------------------------- 218 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCE---------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEE---------------------------------------
Confidence 57889999999999999999999987522222222322211
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcc--cch-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--ANS- 202 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~~- 202 (827)
-.+.+.+ ..+.++||||+... .|.+..+.++.. ..++...+ ++++|+++.... ...
T Consensus 219 ------------~~i~~~g---~~v~l~DT~G~i~~----lp~~lve~f~~t-l~~~~~aD-~il~VvD~s~~~~~~~~~ 277 (364)
T 2qtf_A 219 ------------YAIPINN---RKIMLVDTVGFIRG----IPPQIVDAFFVT-LSEAKYSD-ALILVIDSTFSENLLIET 277 (364)
T ss_dssp ------------EEEEETT---EEEEEEECCCBCSS----CCGGGHHHHHHH-HHGGGGSS-EEEEEEETTSCHHHHHHH
T ss_pred ------------EEEEECC---EEEEEEeCCCchhc----CCHHHHHHHHHH-HHHHHhCC-EEEEEEECCCCcchHHHH
Confidence 0122221 35789999998542 134444455544 34667666 667777765433 111
Q ss_pred --HHHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 203 --DALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 203 --d~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
....+++.+...+.++|+|+||+|+.+.+
T Consensus 278 ~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 278 LQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp HHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred HHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 12355666665678999999999998654
No 72
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.02 E-value=4.5e-10 Score=108.85 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=65.5
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|++..+.+....+.+.-...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~---------------------------------------- 45 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLT---------------------------------------- 45 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEE----------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEE----------------------------------------
Confidence 3579999999999999999999886532211111100000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH--
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~-- 204 (827)
..+.+. .....+.|+||||.. ....+...|++..+ ++++|.++.....-...
T Consensus 46 -----------~~~~~~-~~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1z08_A 46 -----------KKLNIG-GKRVNLAIWDTAGQE-------------RFHALGPIYYRDSN-GAILVYDITDEDSFQKVKN 99 (170)
T ss_dssp -----------EEEESS-SCEEEEEEEECCCC--------------------CCSSTTCS-EEEEEEETTCHHHHHHHHH
T ss_pred -----------EEEEEC-CEEEEEEEEECCCcH-------------hhhhhHHHHhccCC-EEEEEEECcCHHHHHHHHH
Confidence 001110 011358899999943 22344556788777 44555555543222222
Q ss_pred -HHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 205 -LQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 -l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+..++...+.+.++++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 100 WVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp HHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCeEEEEEECcccccc
Confidence 22233333346889999999999753
No 73
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.02 E-value=8.1e-10 Score=111.10 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=24.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~l 73 (827)
...+|+|+|..++|||||+|+|++..+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~ 34 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS 34 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 3468999999999999999999998763
No 74
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.02 E-value=1.4e-09 Score=123.63 Aligned_cols=153 Identities=19% Similarity=0.297 Sum_probs=85.4
Q ss_pred CCCchHHHHHHHHHHHHHhCCC--C---CCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCC-CccccceEEEEeeccCC
Q 003355 21 LGGSVIPLVNKLQDIFAQLGSQ--S---TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKT 94 (827)
Q Consensus 21 ~~~~~~~~~~~l~d~~~~~g~~--~---~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~-g~~Tr~p~~l~l~~~~~ 94 (827)
-+..+-.+++.+.+.+...+.. . .-..++|+|||.+|+|||||+|+|+|..+..++. ..+|+-+.
T Consensus 149 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~--------- 219 (439)
T 1mky_A 149 HNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPV--------- 219 (439)
T ss_dssp TTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------C---------
T ss_pred CCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCce---------
Confidence 3556667777776666543311 1 2346799999999999999999999986421111 11222110
Q ss_pred CcccceeecCCCccccChHHHHHHHHHhhhhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHH
Q 003355 95 DEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARI 174 (827)
Q Consensus 95 ~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i 174 (827)
. ..+.+.+ .++.+|||||+.+..... +..++...
T Consensus 220 ---~---------------------------------------~~i~~~g---~~~~l~Dt~G~~~~~~~~-~~~~e~~~ 253 (439)
T 1mky_A 220 ---D---------------------------------------DEVFIDG---RKYVFVDTAGLRRKSRVE-PRTVEKYS 253 (439)
T ss_dssp ---C---------------------------------------EEEEETT---EEEEESSCSCC------------CCSC
T ss_pred ---E---------------------------------------EEEEECC---EEEEEEECCCCccccccc-hhhHHHHH
Confidence 0 0111211 257899999985321110 00000000
Q ss_pred HHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 175 RTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 175 ~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
...+..|+...+ ++++|.++......++ ..++..+...+.++|+|+||+|+.+.
T Consensus 254 ~~~~~~~i~~ad-~vllv~d~~~~~~~~~-~~i~~~l~~~~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 254 NYRVVDSIEKAD-VVVIVLDATQGITRQD-QRMAGLMERRGRASVVVFNKWDLVVH 307 (439)
T ss_dssp CHHHHHHHHHCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGSTT
T ss_pred HHHHHHHHhhCC-EEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECccCCCc
Confidence 011235677666 5566667766555554 45555555568999999999999864
No 75
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.02 E-value=1.5e-09 Score=108.87 Aligned_cols=119 Identities=17% Similarity=0.237 Sum_probs=70.7
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhh
Q 003355 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (827)
Q Consensus 44 ~~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (827)
....++|+|+|..++|||||+|+|++..+. .....++......
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~------------------------------------ 53 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRK------------------------------------ 53 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCTTCCEEEEE------------------------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEE------------------------------------
Confidence 345679999999999999999999988752 2222111111000
Q ss_pred hhhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH
Q 003355 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (827)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d 203 (827)
.+.+ ......+.||||||... ...+...|+...+.+ ++|.++.....-..
T Consensus 54 ---------------~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~-i~v~d~~~~~s~~~ 103 (206)
T 2bov_A 54 ---------------KVVL-DGEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGF-LCVFSITEMESFAA 103 (206)
T ss_dssp ---------------EEEE-TTEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEE-EEEEETTCHHHHHH
T ss_pred ---------------EEEE-CCEEEEEEEEcCCChhh-------------hHHHHHHHHhhCCEE-EEEEECCCHHHHHH
Confidence 0001 00112588999999542 234556778877744 44555543222111
Q ss_pred H---H-HHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 A---L-QIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 ~---l-~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
. + .+.......+.++|+|+||+|+.+
T Consensus 104 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 104 TADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp HHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 1 2 233334445789999999999975
No 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.01 E-value=4.4e-10 Score=108.89 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=23.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.+|+|+|..++|||||+|+|++..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~ 28 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTF 28 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4799999999999999999999765
No 77
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.01 E-value=1.7e-09 Score=104.87 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=68.9
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|++..+.. ..+|....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~----------------------------------------- 42 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVT---TIPTIGFN----------------------------------------- 42 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCC---CCCCSSEE-----------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCC---cCCcCccc-----------------------------------------
Confidence 4689999999999999999999876521 11111000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
...+.+. ...+.|+||||..+ .+.+...|++..+ ++++|.+++...+-.....
T Consensus 43 ----------~~~~~~~---~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~ 95 (171)
T 1upt_A 43 ----------VETVTYK---NLKFQVWDLGGLTS-------------IRPYWRCYYSNTD-AVIYVVDSCDRDRIGISKS 95 (171)
T ss_dssp ----------EEEEEET---TEEEEEEEECCCGG-------------GGGGGGGGCTTCS-EEEEEEETTCCTTHHHHHH
T ss_pred ----------eEEEEEC---CEEEEEEECCCChh-------------hhHHHHHHhccCC-EEEEEEECCCHHHHHHHHH
Confidence 0011111 23689999999642 2234557888877 5555566654422222222
Q ss_pred HHH-HhC---CCCCceEEeeecCCCCCC
Q 003355 207 IAG-IAD---PDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 207 la~-~~d---p~g~rtIgVlTK~D~~~~ 230 (827)
... .+. ..+.++++|+||+|+.+.
T Consensus 96 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 96 ELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 222 222 247899999999999864
No 78
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.01 E-value=8.5e-10 Score=109.66 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=70.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+.+......+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----------------------------------------- 57 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDF----------------------------------------- 57 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCE-----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEE-----------------------------------------
Confidence 346899999999999999999998765322111100000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHH-HHHHHHhcCCccEEEeecCCCCcccchH-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIR-TMIMSYIKQPSCLILAVTPANSDLANSD- 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~-~lv~~yi~~~~~iIL~V~~a~~d~~~~d- 203 (827)
....+.+. .....+.|+||||.. ... .+...|++..+ ++++|.++....+-..
T Consensus 58 ----------~~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~d-~iilv~D~~~~~s~~~~ 112 (189)
T 1z06_A 58 ----------RERAVDID-GERIKIQLWDTAGQE-------------RFRKSMVQHYYRNVH-AVVFVYDMTNMASFHSL 112 (189)
T ss_dssp ----------EEEEEEET-TEEEEEEEEECCCSH-------------HHHTTTHHHHHTTCC-EEEEEEETTCHHHHHTH
T ss_pred ----------EEEEEEEC-CEEEEEEEEECCCch-------------hhhhhhhHHHhcCCC-EEEEEEECcCHHHHHHH
Confidence 00011111 011358999999942 333 56778888887 5555566554322111
Q ss_pred --HH-HHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 --AL-QIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 --~l-~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+ .+.+.....+.++|+|+||+|+.+
T Consensus 113 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 113 PAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp HHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 12 233344456789999999999965
No 79
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.01 E-value=2.2e-09 Score=106.74 Aligned_cols=114 Identities=21% Similarity=0.188 Sum_probs=69.8
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|++..+.. ... .|-.. .+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~-~t~~~------------~~~--------------------------- 60 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNE-DMI-PTVGF------------NMR--------------------------- 60 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC-SCC-CCCSE------------EEE---------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCC-ccC-CCCce------------eEE---------------------------
Confidence 3579999999999999999999876521 111 11000 000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
. +.. ....+.||||||.. ....+...|++..+ ++++|+++.....-.....
T Consensus 61 ------------~--~~~-~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~ii~v~D~~~~~s~~~~~~ 111 (188)
T 1zd9_A 61 ------------K--ITK-GNVTIKLWDIGGQP-------------RFRSMWERYCRGVS-AIVYMVDAADQEKIEASKN 111 (188)
T ss_dssp ------------E--EEE-TTEEEEEEEECCSH-------------HHHTTHHHHHTTCS-EEEEEEETTCGGGHHHHHH
T ss_pred ------------E--EEe-CCEEEEEEECCCCH-------------hHHHHHHHHHccCC-EEEEEEECCCHHHHHHHHH
Confidence 0 000 12368999999942 34556678888887 4555566654332222222
Q ss_pred HHHHh-C---CCCCceEEeeecCCCCCC
Q 003355 207 IAGIA-D---PDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 207 la~~~-d---p~g~rtIgVlTK~D~~~~ 230 (827)
....+ . ..+.++|+|+||+|+.+.
T Consensus 112 ~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 112 ELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 22222 2 256899999999999864
No 80
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.01 E-value=8.1e-10 Score=110.05 Aligned_cols=118 Identities=13% Similarity=0.149 Sum_probs=69.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+.+....+.+ .. .
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~--~-------------------------------------- 62 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG-VE--F-------------------------------------- 62 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSS-EE--E--------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc-ee--E--------------------------------------
Confidence 346899999999999999999999875322111100 00 0
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~- 204 (827)
....+.+ ......+.|+||||..+. ..+...|++..+ ++++|.++.....-...
T Consensus 63 ----------~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d-~vi~v~D~~~~~s~~~~~ 117 (193)
T 2oil_A 63 ----------STRTVML-GTAAVKAQIWDTAGLERY-------------RAITSAYYRGAV-GALLVFDLTKHQTYAVVE 117 (193)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEEESCCCTT-------------CTTHHHHHTTCC-EEEEEEETTCHHHHHTHH
T ss_pred ----------EEEEEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhccCC-EEEEEEECCCHHHHHHHH
Confidence 0001111 111235899999997532 233456788877 45555665543322222
Q ss_pred --HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 --LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 --l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+..+......+.++|+|+||+|+.+
T Consensus 118 ~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 118 RWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp HHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 2233333345788999999999975
No 81
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.00 E-value=5.9e-10 Score=118.73 Aligned_cols=121 Identities=22% Similarity=0.274 Sum_probs=72.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
-++|+|+|.+|+|||||+|+|+|..+ .++.- .+|.-+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~----------------------------------------- 40 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVER----------------------------------------- 40 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEE-----------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEE-----------------------------------------
Confidence 46899999999999999999999874 22211 111111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHh--cCCccEEEeecCCCCcccchH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYI--KQPSCLILAVTPANSDLANSD 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi--~~~~~iIL~V~~a~~d~~~~d 203 (827)
....+... ...+.||||||+.+.........++ +.+...|+ ..++ ++++|+++.....
T Consensus 41 ------------~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d-~ii~VvD~~~~~~--- 100 (274)
T 3i8s_A 41 ------------KEGQFSTT-DHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDAD-LLINVVDASNLER--- 100 (274)
T ss_dssp ------------EEEEEECS-SCEEEEEECCCCSCSCC----CCHH---HHHHHHHHHHTCCS-EEEEEEEGGGHHH---
T ss_pred ------------EEEEEEeC-CCceEEEECcCCCccccccccCCHH---HHHHHHHHhhcCCC-EEEEEecCCChHH---
Confidence 11111111 1368999999997654211111222 23445565 4665 6666676665222
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+.+..++...+.++|+|+||+|+.+
T Consensus 101 ~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 101 NLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp HHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECccchh
Confidence 23444444445799999999999874
No 82
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.00 E-value=1.4e-09 Score=107.88 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=69.6
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|++..+.+....+.+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~------------------------------------------ 52 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDF------------------------------------------ 52 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEE------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEE------------------------------------------
Confidence 45899999999999999999998875322111111000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
....+.+. .....+.|+||||.... ..+...|++..+ ++++|+++.....-.....
T Consensus 53 ---------~~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~ 108 (195)
T 1x3s_A 53 ---------KVKTISVD-GNKAKLAIWDTAGQERF-------------RTLTPSYYRGAQ-GVILVYDVTRRDTFVKLDN 108 (195)
T ss_dssp ---------EEEEEEET-TEEEEEEEEEECSSGGG-------------CCSHHHHHTTCC-EEEEEEETTCHHHHHTHHH
T ss_pred ---------EEEEEEEC-CeEEEEEEEeCCCchhh-------------hhhhHHHhccCC-EEEEEEECcCHHHHHHHHH
Confidence 00011110 01235899999995432 233456888877 5555666654433333333
Q ss_pred HHHHhCC----CCCceEEeeecCCCCC
Q 003355 207 IAGIADP----DGYRTIGIITKLDIMD 229 (827)
Q Consensus 207 la~~~dp----~g~rtIgVlTK~D~~~ 229 (827)
+...+.. .+.++++|+||+|+.+
T Consensus 109 ~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 109 WLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp HHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred HHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 3444432 4678999999999954
No 83
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.99 E-value=5.7e-10 Score=111.22 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=72.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+.+......+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 57 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG-------------------------------------------- 57 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEET--------------------------------------------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCee--------------------------------------------
Confidence 456899999999999999999998765321110000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccc---h
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---S 202 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~ 202 (827)
.......+.+.+ ....+.||||||. +....+...|++..+. +++|.++.....- .
T Consensus 58 -------~~~~~~~~~~~~-~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~ 115 (191)
T 3dz8_A 58 -------IDFKVKTVYRHE-KRVKLQIWDTAGQ-------------ERYRTITTAYYRGAMG-FILMYDITNEESFNAVQ 115 (191)
T ss_dssp -------TTEEEEEEEETT-TTEEEEEECHHHH-------------HHCHHHHHHHHTTCCE-EEEEEETTCHHHHHTHH
T ss_pred -------eEEEEEEEEECC-EEEEEEEEeCCCh-------------HHHHHHHHHHHccCCE-EEEEEECcCHHHHHHHH
Confidence 000000111111 1235899999992 3455677789998874 5555555533221 1
Q ss_pred HHHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 203 DALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 203 d~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..+..++.....+.++|+|+||+|+.+
T Consensus 116 ~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 116 DWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 223444555556789999999999964
No 84
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.99 E-value=2e-09 Score=113.74 Aligned_cols=125 Identities=17% Similarity=0.215 Sum_probs=71.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCC-ccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g-~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
.-.+|+|+|..++|||||+|+|+|..+...+.. .+|..+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~------------------------------------- 77 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMV------------------------------------- 77 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEE-------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEE-------------------------------------
Confidence 457899999999999999999999875332221 122221111
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcC-CccEEEeecCCCC-cccch
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQ-PSCLILAVTPANS-DLANS 202 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~-~~~iIL~V~~a~~-d~~~~ 202 (827)
.+.. ....++||||||+.+.... .+.....+..|+.. ..+++|+|.+.+. .+...
T Consensus 78 ----------------~~~~-~~~~l~liDTpG~~~~~~~------~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~ 134 (262)
T 3def_A 78 ----------------SRTM-GGFTINIIDTPGLVEAGYV------NHQALELIKGFLVNRTIDVLLYVDRLDVYAVDEL 134 (262)
T ss_dssp ----------------EEEE-TTEEEEEEECCCSEETTEE------CHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHH
T ss_pred ----------------EEEE-CCeeEEEEECCCCCCcccc------hHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHH
Confidence 1111 1126899999998654211 12334445566642 2236666644432 24433
Q ss_pred H--HHHHHHHhCCC--CCceEEeeecCCCCCC
Q 003355 203 D--ALQIAGIADPD--GYRTIGIITKLDIMDR 230 (827)
Q Consensus 203 d--~l~la~~~dp~--g~rtIgVlTK~D~~~~ 230 (827)
+ .+..++..... ..++|+|+||+|+.+.
T Consensus 135 ~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 135 DKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 2 34444433222 2489999999999753
No 85
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.99 E-value=7.3e-10 Score=111.23 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=41.8
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---HHHHHHhCC---CCCceEEe
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIADP---DGYRTIGI 221 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~---l~la~~~dp---~g~rtIgV 221 (827)
..+.|+||||.. ....+...|+...+ ++++|.++....+-... +..+....+ .+.++|+|
T Consensus 73 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 138 (208)
T 2yc2_C 73 VELFLLDTAGSD-------------LYKEQISQYWNGVY-YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138 (208)
T ss_dssp EEEEEEETTTTH-------------HHHHHHSTTCCCCC-EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHhhCc-EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEE
Confidence 368999999953 44567778888887 55555665544332222 233333333 57899999
Q ss_pred eecCCCCC
Q 003355 222 ITKLDIMD 229 (827)
Q Consensus 222 lTK~D~~~ 229 (827)
+||+|+.+
T Consensus 139 ~nK~Dl~~ 146 (208)
T 2yc2_C 139 ANKTDLPP 146 (208)
T ss_dssp EECC----
T ss_pred EECcccch
Confidence 99999976
No 86
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.99 E-value=1.2e-09 Score=109.18 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=69.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+...... |-..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--~~~~----------------------------------------- 58 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISP--TIGA----------------------------------------- 58 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCC--CSSE-----------------------------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCC--Ccce-----------------------------------------
Confidence 346899999999999999999998875211110 0000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~- 204 (827)
+.....+.+ ......+.|+||||..+ ...+...|++..+ ++++|.+++....-...
T Consensus 59 --------~~~~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d-~iilV~d~~~~~s~~~~~ 115 (192)
T 2fg5_A 59 --------SFMTKTVPC-GNELHKFLIWDTAGQER-------------FHSLAPMYYRGSA-AAVIVYDITKQDSFYTLK 115 (192)
T ss_dssp --------EEEEEEEEC-SSSEEEEEEEEECCSGG-------------GGGGTHHHHTTCS-EEEEEEETTCTHHHHHHH
T ss_pred --------eEEEEEEEe-CCEEEEEEEEcCCCchh-------------hHhhhHHhhccCC-EEEEEEeCCCHHHHHHHH
Confidence 000000111 01123689999999532 2334556888887 45555565543322222
Q ss_pred --HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 --LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 --l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+..++...+.+.++++|+||+|+.+
T Consensus 116 ~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 116 KWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHhCCCCCcEEEEEECccccc
Confidence 3334444455789999999999974
No 87
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.99 E-value=1.3e-09 Score=109.70 Aligned_cols=118 Identities=20% Similarity=0.177 Sum_probs=66.4
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+.+....+.+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~----------------------------------------- 62 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEF----------------------------------------- 62 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCE-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCccccee-----------------------------------------
Confidence 356899999999999999999998875322111111000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~- 204 (827)
....+.+. .....+.|+||||.. ....+...|++..+ ++++|.++.....-...
T Consensus 63 ----------~~~~~~~~-~~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 117 (200)
T 2o52_A 63 ----------GSRVVNVG-GKTVKLQIWDTAGQE-------------RFRSVTRSYYRGAA-GALLVYDITSRETYNSLA 117 (200)
T ss_dssp ----------EEEEEEET-TEEEEEEEECCTTHH-------------HHSCCCHHHHTTCS-EEEEEEETTCHHHHHTHH
T ss_pred ----------EEEEEEEC-CeeeEEEEEcCCCcH-------------hHHHHHHHHhccCC-EEEEEEECcCHHHHHHHH
Confidence 00011111 112368999999942 33444567888887 44555555543222222
Q ss_pred --HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 --LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 --l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+..+......+.++++|+||+|+.+
T Consensus 118 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 118 AWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp HHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 2233333445789999999999964
No 88
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.98 E-value=6.9e-10 Score=110.33 Aligned_cols=117 Identities=16% Similarity=0.133 Sum_probs=69.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|++..+.+......+. ..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~---~~--------------------------------------- 59 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGI---DF--------------------------------------- 59 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCC---EE---------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeE---EE---------------------------------------
Confidence 357999999999999999999988753221111000 00
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH---
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d--- 203 (827)
....+.+. .....+.|+||||..... .+...|+...+ ++++|.+++....-..
T Consensus 60 ---------~~~~~~~~-~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~ 115 (189)
T 2gf9_A 60 ---------KVKTVYRH-DKRIKLQIWDTAGQERYR-------------TITTAYYRGAM-GFLLMYDIANQESFAAVQD 115 (189)
T ss_dssp ---------EEEEEEET-TEEEEEEEEECCSCCSSC-------------CSGGGGGTTCS-EEEEEEETTCHHHHHTHHH
T ss_pred ---------EEEEEEEC-CeEEEEEEEeCCCcHHHh-------------hhHHHhccCCC-EEEEEEECCCHHHHHHHHH
Confidence 00001110 112358999999964321 22346788877 4555556554322222
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+..+......+.++|+|+||+|+.+
T Consensus 116 ~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 116 WATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHhcCCCCCEEEEEECccccc
Confidence 23334444445789999999999975
No 89
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.98 E-value=4.9e-10 Score=113.33 Aligned_cols=118 Identities=16% Similarity=0.094 Sum_probs=68.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+++|++..+... ...++......
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~-------------------------------------- 69 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE-YIPTVFDNYSA-------------------------------------- 69 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC--CCCCSEEEEEE--------------------------------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCC-cCCeecceeEE--------------------------------------
Confidence 456899999999999999999998765221 11111110000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~- 204 (827)
.+.+. .....+.|+||||... ...+...|++..+ ++++|.+++....-.+.
T Consensus 70 -------------~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 121 (204)
T 4gzl_A 70 -------------NVMVD-GKPVNLGLWDTAGLED-------------YDRLRPLSYPQTD-VFLICFSLVSPASFENVR 121 (204)
T ss_dssp -------------EEECC--CEEEEEEEEECCSGG-------------GTTTGGGGCTTCS-EEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEC-CEEEEEEEEECCCchh-------------hHHHHHHHhccCC-EEEEEEECCCHHHHHHHH
Confidence 00000 0112477999999742 2234456888887 45555555543322222
Q ss_pred ---HHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 205 ---LQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 205 ---l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
+..++... .+.++|+|+||+|+.+..
T Consensus 122 ~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 122 AKWYPEVRHHC-PNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp HTHHHHHHHHC-SSCCEEEEEECHHHHTCH
T ss_pred HHHHHHHHHhC-CCCCEEEEEechhhccch
Confidence 23333333 368999999999998754
No 90
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.98 E-value=3.7e-09 Score=103.61 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.6
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.-+|+|+|..++|||||+++|++..+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 35799999999999999999998876
No 91
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.98 E-value=3.1e-10 Score=109.65 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.4
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
..+|+|+|..++|||||+|+|++..+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC
Confidence 45799999999999999999998765
No 92
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.97 E-value=3.7e-10 Score=114.95 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=42.2
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH---HHHHHHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d---~l~la~~~dp~g~rtIgVlTK~ 225 (827)
.+.||||||..... .+...|+...+ ++++|++++......+ .+..+....+.+.++|+|+||+
T Consensus 62 ~~~l~Dt~G~~~~~-------------~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (218)
T 4djt_A 62 KFNVWDTAGQEKKA-------------VLKDVYYIGAS-GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127 (218)
T ss_dssp EEEEEEECSGGGTS-------------CCCHHHHTTCS-EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECT
T ss_pred EEEEEecCCchhhc-------------hHHHHHhhcCC-EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 58999999964322 22335677777 5555566654433222 2344444445578999999999
Q ss_pred CCCCC
Q 003355 226 DIMDR 230 (827)
Q Consensus 226 D~~~~ 230 (827)
|+.+.
T Consensus 128 Dl~~~ 132 (218)
T 4djt_A 128 DIKNR 132 (218)
T ss_dssp TCC--
T ss_pred CCccc
Confidence 99764
No 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.97 E-value=4.1e-09 Score=104.16 Aligned_cols=114 Identities=15% Similarity=0.159 Sum_probs=70.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++.. +.... .|...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~----------------------------------------- 52 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGF----------------------------------------- 52 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSE-----------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCcc-----------------------------------------
Confidence 45789999999999999999999876 21111 11110
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
. ...+.+ +...+.|+||||.. ..+.+...|++..+ ++++|.+++...+-..+.
T Consensus 53 --------~--~~~~~~---~~~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~ 105 (186)
T 1ksh_A 53 --------N--IKTLEH---RGFKLNIWDVGGQK-------------SLRSYWRNYFESTD-GLIWVVDSADRQRMQDCQ 105 (186)
T ss_dssp --------E--EEEEEE---TTEEEEEEEECCSH-------------HHHTTGGGGCTTCS-EEEEEEETTCGGGHHHHH
T ss_pred --------c--eEEEEE---CCEEEEEEECCCCH-------------hHHHHHHHHhcCCC-EEEEEEECcCHHHHHHHH
Confidence 0 001111 12468999999953 34455667888887 555556665543333322
Q ss_pred HHHHHh-C---CCCCceEEeeecCCCCCC
Q 003355 206 QIAGIA-D---PDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~-d---p~g~rtIgVlTK~D~~~~ 230 (827)
.....+ . ..+.++++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 106 RELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 233222 2 246899999999999864
No 94
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.97 E-value=1.6e-09 Score=109.17 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=70.1
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|++..+........+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~------------------------------------------ 45 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF------------------------------------------ 45 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCE------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee------------------------------------------
Confidence 46899999999999999999998875211111000000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH--
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~-- 204 (827)
....+.+. .....+.||||||.... +.+...|+...+ ++++|+++.....-...
T Consensus 46 ---------~~~~~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d-~vilv~d~~~~~s~~~~~~ 101 (206)
T 2bcg_Y 46 ---------KIKTVELD-GKTVKLQIWDTAGQERF-------------RTITSSYYRGSH-GIIIVYDVTDQESFNGVKM 101 (206)
T ss_dssp ---------EEEEEEET-TEEEEEEEECCTTTTTT-------------TCCCGGGGTTCS-EEEEEEETTCHHHHHHHHH
T ss_pred ---------EEEEEEEC-CEEEEEEEEeCCChHHH-------------HHHHHHhccCCC-EEEEEEECcCHHHHHHHHH
Confidence 00011111 01136899999996432 123446788777 55556666544332222
Q ss_pred -HHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 205 -LQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 -l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+..+......+.++|+|+||+|+.+.
T Consensus 102 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 102 WLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 23334444557899999999999863
No 95
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.97 E-value=7.4e-10 Score=111.44 Aligned_cols=118 Identities=16% Similarity=0.178 Sum_probs=67.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+. .....++.... . ....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~-~------------~~~~---------------------- 66 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTY-S------------KIVT---------------------- 66 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEE-E------------EEEC----------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEE-E------------EEEE----------------------
Confidence 4578999999999999999999998753 22211111110 0 0000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
+ ......+.||||||..... .+...|++..+ ++++|.++.....-....
T Consensus 67 ----------------~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 115 (201)
T 3oes_A 67 ----------------L-GKDEFHLHLVDTAGQDEYS-------------ILPYSFIIGVH-GYVLVYSVTSLHSFQVIE 115 (201)
T ss_dssp ---------------------CEEEEEEEECCCCTTC-------------CCCGGGTTTCC-EEEEEEETTCHHHHHHHH
T ss_pred ----------------E-CCEEEEEEEEECCCccchH-------------HHHHHHHhcCC-EEEEEEeCCCHHHHHHHH
Confidence 0 0011357999999964321 22346788877 455555555432222222
Q ss_pred HHHHHh----CCCCCceEEeeecCCCCCC
Q 003355 206 QIAGIA----DPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~----dp~g~rtIgVlTK~D~~~~ 230 (827)
.+...+ ...+.++|+|+||+|+.+.
T Consensus 116 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 116 SLYQKLHEGHGKTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp HHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence 333333 2336899999999999753
No 96
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.97 E-value=1e-09 Score=108.62 Aligned_cols=120 Identities=21% Similarity=0.308 Sum_probs=70.2
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
...++|+|+|..|+|||||+|+|+|..+.......+|..+
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~---------------------------------------- 44 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEK---------------------------------------- 44 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEE----------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccc----------------------------------------
Confidence 3457899999999999999999999764211111111111
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCccEEEeecCCCCcccch
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANS 202 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~ 202 (827)
....+.+. ...+.|+||||........ ..+.+...|+. ..+ ++++|+++.. + .
T Consensus 45 -----------~~~~~~~~---~~~~~l~Dt~G~~~~~~~~-------~~~~~~~~~~~~~~~~-~~i~v~d~~~-~--~ 99 (188)
T 2wjg_A 45 -----------KEGEFEYN---GEKFKVVDLPGVYSLTANS-------IDEIIARDYIINEKPD-LVVNIVDATA-L--E 99 (188)
T ss_dssp -----------EEEEEEET---TEEEEEEECCCCSCCSSSS-------HHHHHHHHHHHHHCCS-EEEEEEEGGG-H--H
T ss_pred -----------eEEEEEeC---CcEEEEEECCCcCcccccc-------HHHHHHHHHHhccCCC-EEEEEecchh-H--H
Confidence 00011111 1368999999986542111 12233445654 354 6666766653 2 1
Q ss_pred HHHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 203 DALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 203 d~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
....+...+...+.++|+|+||+|+..
T Consensus 100 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 100 RNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 223444444446789999999999864
No 97
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.96 E-value=2.4e-09 Score=106.15 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=68.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+.. . .| +..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~-----~~-------t~~------------------------------- 49 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVH--T-----SP-------TIG------------------------------- 49 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEE--E-----EC-------CSC-------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc--C-----cC-------CCc-------------------------------
Confidence 45789999999999999999999876520 0 00 000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
+. ...+.+. ...+.|+||||..+ .+.+...|++..+ ++++|++++...+-....
T Consensus 50 -------~~--~~~~~~~---~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~ 103 (187)
T 1zj6_A 50 -------SN--VEEIVIN---NTRFLMWDIGGQES-------------LRSSWNTYYTNTE-FVIVVVDSTDRERISVTR 103 (187)
T ss_dssp -------SS--CEEEEET---TEEEEEEECCC-----------------CGGGHHHHTTCC-EEEEEEETTCTTTHHHHH
T ss_pred -------cc--eEEEEEC---CEEEEEEECCCCHh-------------HHHHHHHHhcCCC-EEEEEEeCCCHHHHHHHH
Confidence 00 0011111 24689999999642 2334457888887 555556665443222322
Q ss_pred HHHHHhC----CCCCceEEeeecCCCCCC
Q 003355 206 QIAGIAD----PDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~d----p~g~rtIgVlTK~D~~~~ 230 (827)
.+...+. ..+.++|+|+||+|+.+.
T Consensus 104 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 104 EELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 3333322 257899999999999863
No 98
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.95 E-value=2.3e-09 Score=105.49 Aligned_cols=118 Identities=18% Similarity=0.256 Sum_probs=68.4
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
....+|+|+|..++|||||+|+|++..+. .....++......
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~------------------------------------- 57 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSYLK------------------------------------- 57 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEE-------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceeEE-------------------------------------
Confidence 34558999999999999999999987652 2222211111000
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch--
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS-- 202 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~-- 202 (827)
.+.+ ......+.|+||||.... ..+...|++..+. +++|.+++...+-.
T Consensus 58 --------------~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~ 108 (183)
T 3kkq_A 58 --------------HTEI-DNQWAILDVLDTAGQEEF-------------SAMREQYMRTGDG-FLIVYSVTDKASFEHV 108 (183)
T ss_dssp --------------EEEE-TTEEEEEEEEECCSCGGG-------------CSSHHHHHHHCSE-EEEEEETTCHHHHHTH
T ss_pred --------------EEEe-CCcEEEEEEEECCCchhh-------------HHHHHHHHhcCCE-EEEEEECCCHHHHHHH
Confidence 0000 001124778999995322 2334467777774 44555555432111
Q ss_pred -HHH-HHHHHhCCCCCceEEeeecCCCCC
Q 003355 203 -DAL-QIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 203 -d~l-~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..+ .+.+.....+.++|+|+||+|+.+
T Consensus 109 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 109 DRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp HHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred HHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 112 233444556789999999999975
No 99
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.95 E-value=1.1e-09 Score=105.74 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=41.0
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---HHHHHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~---l~la~~~dp~g~rtIgVlTK~ 225 (827)
.+.|+||||..+ ...+...|+...+ ++++|.+++....-... +..+........++++|+||+
T Consensus 56 ~~~~~D~~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~ 121 (170)
T 1r2q_A 56 KFEIWDTAGQER-------------YHSLAPMYYRGAQ-AAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121 (170)
T ss_dssp EEEEEEECCSGG-------------GGGGHHHHHTTCS-EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEeCCCcHH-------------hhhhhHHhccCCC-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 589999999532 2344567888887 55555565543222222 222333333467889999999
Q ss_pred CCCC
Q 003355 226 DIMD 229 (827)
Q Consensus 226 D~~~ 229 (827)
|+.+
T Consensus 122 Dl~~ 125 (170)
T 1r2q_A 122 DLAN 125 (170)
T ss_dssp GGGG
T ss_pred cCcc
Confidence 9975
No 100
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.95 E-value=2.8e-09 Score=107.82 Aligned_cols=118 Identities=15% Similarity=0.246 Sum_probs=71.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+ +...+.+.-.. .
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~--~-------------------------------------- 63 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVD--F-------------------------------------- 63 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEE--E--------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCcccee--E--------------------------------------
Confidence 346899999999999999999998765 22221110000 0
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccc---h
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---S 202 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~ 202 (827)
....+.+.+ ....+.|+||||.. ..+.+...|++..+ ++++|.++....+- .
T Consensus 64 ----------~~~~~~~~~-~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d-~~i~v~D~~~~~s~~~~~ 118 (201)
T 2ew1_A 64 ----------MIKTVEING-EKVKLQIWDTAGQE-------------RFRSITQSYYRSAN-ALILTYDITCEESFRCLP 118 (201)
T ss_dssp ----------EEEEEEETT-EEEEEEEEEECCSG-------------GGHHHHGGGSTTCS-EEEEEEETTCHHHHHTHH
T ss_pred ----------EEEEEEECC-EEEEEEEEECCCcH-------------HHHHHHHHHHhcCC-EEEEEEECCCHHHHHHHH
Confidence 000111110 11258999999942 33456778898887 45555555443221 1
Q ss_pred HHHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 203 DALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 203 d~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
..+..++...+.+.++|+|+||+|+.+
T Consensus 119 ~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 119 EWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 223444555556789999999999974
No 101
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.94 E-value=3e-08 Score=109.57 Aligned_cols=126 Identities=22% Similarity=0.317 Sum_probs=71.8
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
...+.|+|+|..|+|||||+|+|+|..+...+...+|+.+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~------------------------------------- 207 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG------------------------------------- 207 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEE-------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEE-------------------------------------
Confidence 4678999999999999999999999863111111122221100
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc----cc
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD----LA 200 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d----~~ 200 (827)
.+.. ....+.++||||+....... ...++ ...+..+...++ .+|+|++++.. +.
T Consensus 208 ----------------~~~~-~~~~~~l~Dt~G~~~~~~~~-~~~~~---~~~~~~~~~~ad-~illV~D~s~~~~~~~~ 265 (357)
T 2e87_A 208 ----------------QFED-GYFRYQIIDTPGLLDRPISE-RNEIE---KQAILALRYLGN-LIIYIFDPSEHCGFPLE 265 (357)
T ss_dssp ----------------EEEE-TTEEEEEEECTTTSSSCSTT-SCHHH---HHHHHGGGGTCS-EEEEEECTTCTTSSCHH
T ss_pred ----------------EEEe-cCceEEEEeCCCccccchhh-hhHHH---HHHHHHHHhcCC-EEEEEEeCCccccCCHH
Confidence 0000 12358999999997643321 12222 223334444455 66666775542 22
Q ss_pred ch-HHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 201 NS-DALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 201 ~~-d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.. ..+..+....+ +.++|+|+||+|+.+.
T Consensus 266 ~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 266 EQIHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred HHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 21 22333333323 7899999999999864
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.94 E-value=3e-09 Score=103.55 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=42.9
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D 226 (827)
.+.++||||..+..... ..+.+...|+. .++ ++++|+++.... ....+...+...+.++|+|.||+|
T Consensus 51 ~l~i~Dt~G~~~~~~~~-------~~~~~~~~~~~~~~~~-~~i~v~D~~~~~---~~~~~~~~~~~~~~p~ilv~nK~D 119 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANS-------IDEIIARDYIINEKPD-LVVNIVDATALE---RNLYLTLQLMEMGANLLLALNKMD 119 (165)
T ss_dssp EEEEEECCCCSCSSSSS-------HHHHHHHHHHHHHCCS-EEEEEEETTCHH---HHHHHHHHHHHTTCCEEEEEECHH
T ss_pred EEEEEECCCcccCCCcc-------hhHHHHHHHHhcCCCC-EEEEEecCCchh---HhHHHHHHHHhcCCCEEEEEEchH
Confidence 68999999986532111 22345556765 665 666677765421 112333333334789999999999
Q ss_pred CCC
Q 003355 227 IMD 229 (827)
Q Consensus 227 ~~~ 229 (827)
+..
T Consensus 120 l~~ 122 (165)
T 2wji_A 120 LAK 122 (165)
T ss_dssp HHH
T ss_pred hcc
Confidence 863
No 103
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.94 E-value=8.8e-09 Score=102.15 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=41.8
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCccc--chH----HHHHHHHh--CCCCCceEE
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA--NSD----ALQIAGIA--DPDGYRTIG 220 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~--~~d----~l~la~~~--dp~g~rtIg 220 (827)
.+.|+||||...- +.+...|++..+. +++|.++..... +.+ ...+...+ ...+.++|+
T Consensus 75 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~-~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piil 140 (198)
T 3t1o_A 75 RFHLYTVPGQVFY-------------NASRKLILRGVDG-IVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVI 140 (198)
T ss_dssp EEEEEECCSCCSC-------------SHHHHHHTTTCCE-EEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEE
T ss_pred EEEEEeCCChHHH-------------HHHHHHHHhcCCE-EEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 5899999996432 2345568888874 455555553211 111 12233333 234789999
Q ss_pred eeecCCCCCC
Q 003355 221 IITKLDIMDR 230 (827)
Q Consensus 221 VlTK~D~~~~ 230 (827)
|+||+|+.+.
T Consensus 141 v~NK~Dl~~~ 150 (198)
T 3t1o_A 141 QVNKRDLPDA 150 (198)
T ss_dssp EEECTTSTTC
T ss_pred EEEchhcccc
Confidence 9999999763
No 104
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.94 E-value=5.8e-10 Score=109.08 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
...+|+|+|..++|||||+|+|++..+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~ 31 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF 31 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC
Confidence 346899999999999999999998764
No 105
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.94 E-value=1.3e-09 Score=107.27 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=65.8
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
.++|+|+|..++|||||+|+|++..+. .....++......
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~--------------------------------------- 45 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFV-DSYDPTIENTFTK--------------------------------------- 45 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEE---------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCCccccEEE---------------------------------------
Confidence 468999999999999999999976642 2222111111000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH-
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL- 205 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l- 205 (827)
.+.+ ......+.|+||||..... .+...|++..+.+| +|.++.....-....
T Consensus 46 ------------~~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~ 98 (181)
T 3t5g_A 46 ------------LITV-NGQEYHLQLVDTAGQDEYS-------------IFPQTYSIDINGYI-LVYSVTSIKSFEVIKV 98 (181)
T ss_dssp ------------EEEE-TTEEEEEEEEECCCCCTTC-------------CCCGGGTTTCSEEE-EEEETTCHHHHHHHHH
T ss_pred ------------EEEE-CCEEEEEEEEeCCCchhhh-------------HHHHHHHhcCCEEE-EEEECCCHHHHHHHHH
Confidence 0000 0011257899999975431 22335777777444 455554322221211
Q ss_pred ---HHHHHhCCCCCceEEeeecCCCCCC
Q 003355 206 ---QIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ---~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+.+.....+.++++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 99 IHGKLLDMVGKVQIPIMLVGNKKDLHME 126 (181)
T ss_dssp HHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred HHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 2334444557899999999999753
No 106
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.93 E-value=3.9e-09 Score=105.61 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=66.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+.. ..+|...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~---~~~t~~~----------------------------------------- 63 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGF----------------------------------------- 63 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE---EEEETTE-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc---cCCcCce-----------------------------------------
Confidence 45689999999999999999999876521 1111110
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
. ...+.+ ....+.|+||||..+ .+.+...|++..+ ++++|.+++....-..+.
T Consensus 64 --------~--~~~~~~---~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d-~iilv~D~~~~~s~~~~~ 116 (192)
T 2b6h_A 64 --------N--VETVEY---KNICFTVWDVGGQDK-------------IRPLWRHYFQNTQ-GLIFVVDSNDRERVQESA 116 (192)
T ss_dssp --------E--EEEEEE---TTEEEEEEECC------------------CTTHHHHHHTCC-EEEEEEETTCGGGHHHHH
T ss_pred --------e--EEEEEE---CCEEEEEEECCCCHh-------------HHHHHHHHhccCC-EEEEEEECCCHHHHHHHH
Confidence 0 001111 123689999999642 2334556888887 455556665443222222
Q ss_pred HHHHHh-C---CCCCceEEeeecCCCCCC
Q 003355 206 QIAGIA-D---PDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~-d---p~g~rtIgVlTK~D~~~~ 230 (827)
.....+ . ..+.++|+|+||+|+.+.
T Consensus 117 ~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 117 DELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 333322 2 236899999999999764
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.92 E-value=7.9e-09 Score=101.56 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=43.9
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccc--hHHHHHHHHhCCCCCceEEeeecCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN--SDALQIAGIADPDGYRTIGIITKLD 226 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~--~d~l~la~~~dp~g~rtIgVlTK~D 226 (827)
.+.++||||+.+.. ..+....-..+..|++..+ ++++|.++....+. ...+.......+.+.++|+|+||+|
T Consensus 53 ~~~l~Dt~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~D 126 (172)
T 2gj8_A 53 PLHIIDTAGLREAS-----DEVERIGIERAWQEIEQAD-RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126 (172)
T ss_dssp EEEEEECCCCSCCS-----SHHHHHHHHHHHHHHHTCS-EEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred EEEEEECCCcccch-----hHHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECcc
Confidence 47899999986431 1122111122345777777 55556666543332 2223334444455789999999999
Q ss_pred CCC
Q 003355 227 IMD 229 (827)
Q Consensus 227 ~~~ 229 (827)
+.+
T Consensus 127 l~~ 129 (172)
T 2gj8_A 127 ITG 129 (172)
T ss_dssp HHC
T ss_pred CCc
Confidence 864
No 108
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.92 E-value=3.5e-09 Score=106.77 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=43.1
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH---HHHHHHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d---~l~la~~~dp~g~rtIgVlTK~ 225 (827)
.+.|+||||.. ..+.+...|++..+.+ ++|.++.....-.. .+..+......+.++|+|+||+
T Consensus 79 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~i-ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~ 144 (201)
T 2hup_A 79 KLQIWDTAGQE-------------RFRTITQSYYRSANGA-ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS 144 (201)
T ss_dssp EEEEECCTTCG-------------GGHHHHHHHHTTCSEE-EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEECCCcH-------------hHHHHHHHHHhhCCEE-EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 68999999953 2345667889888755 44555543322112 2333344444568999999999
Q ss_pred CCCC
Q 003355 226 DIMD 229 (827)
Q Consensus 226 D~~~ 229 (827)
|+.+
T Consensus 145 Dl~~ 148 (201)
T 2hup_A 145 DLSE 148 (201)
T ss_dssp TCGG
T ss_pred cccc
Confidence 9975
No 109
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.92 E-value=8.3e-10 Score=124.53 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=71.0
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCc-cccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~-~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
..+.|+|+|..++|||||+|+|+|.++.+..... +|.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~------------------------------------------ 70 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTT------------------------------------------ 70 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------C------------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeee------------------------------------------
Confidence 5678999999999999999999998753221110 111
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
+.....+.......+.||||||+.+...-.+ . .+ ..+..|+...+ ++|+|+++. ...++
T Consensus 71 -----------d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~-~----~~-~~~~~~l~~aD-~vllVvD~~--~~~~~- 129 (423)
T 3qq5_A 71 -----------DPVYKSMELHPIGPVTLVDTPGLDDVGELGR-L----RV-EKARRVFYRAD-CGILVTDSA--PTPYE- 129 (423)
T ss_dssp -----------CCCEEEEEETTTEEEEEEECSSTTCCCTTCC-C----CH-HHHHHHHTSCS-EEEEECSSS--CCHHH-
T ss_pred -----------eeEEEEEEECCCCeEEEEECcCCCcccchhH-H----HH-HHHHHHHhcCC-EEEEEEeCC--ChHHH-
Confidence 1111111112223689999999975432211 1 11 22456777777 556666773 22222
Q ss_pred HHHHHHhCCCCCceEEeeecCCCCCCcc
Q 003355 205 LQIAGIADPDGYRTIGIITKLDIMDRGT 232 (827)
Q Consensus 205 l~la~~~dp~g~rtIgVlTK~D~~~~~~ 232 (827)
..+...+...+.++|+|+||+|+.+...
T Consensus 130 ~~~l~~l~~~~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 130 DDVVNLFKEMEIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp HHHHHHHHHTTCCEEEECCCCTTTTCCC
T ss_pred HHHHHHHHhcCCCEEEEEeCcCCCCccH
Confidence 3444444444789999999999987543
No 110
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.92 E-value=1.8e-09 Score=118.62 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=70.3
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
+|.|+|||.+|||||||||+|++..+.....-.+|..|..-
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--------------------------------------- 198 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--------------------------------------- 198 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE---------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE---------------------------------------
Confidence 68899999999999999999998753111111233322110
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCC---cccchH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS---DLANSD 203 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~---d~~~~d 203 (827)
. +..++...++|+||||+....... .. +.....+++...+ ++|+|+++.. .-.-.+
T Consensus 199 ------------~--v~~~~~~~~~l~DtPG~i~~a~~~--~~----l~~~fl~~i~~~d-~ll~VvD~s~~~~~~~~~~ 257 (342)
T 1lnz_A 199 ------------M--VETDDGRSFVMADLPGLIEGAHQG--VG----LGHQFLRHIERTR-VIVHVIDMSGLEGRDPYDD 257 (342)
T ss_dssp ------------E--EECSSSCEEEEEEHHHHHHHTTCT--TT----THHHHHHHHHHCC-EEEEEEESSCSSCCCHHHH
T ss_pred ------------E--EEeCCCceEEEecCCCCccccccc--ch----hHHHHHHHHHhcc-EEEEEEECCcccccChHHH
Confidence 0 111222368999999986432111 00 1111233445566 5666666653 111112
Q ss_pred ---HHHHHHHhCC--CCCceEEeeecCCCCCC
Q 003355 204 ---ALQIAGIADP--DGYRTIGIITKLDIMDR 230 (827)
Q Consensus 204 ---~l~la~~~dp--~g~rtIgVlTK~D~~~~ 230 (827)
.+..+..+.+ ...+.|+|+||+|+.+.
T Consensus 258 ~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 258 YLTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp HHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 1233444543 36899999999999863
No 111
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.91 E-value=2.5e-09 Score=107.66 Aligned_cols=68 Identities=15% Similarity=0.043 Sum_probs=41.7
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch----HHHHHHHHhCCCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS----DALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~----d~l~la~~~dp~g~rtIgVlTK 224 (827)
.+.|+||||..+- ..+...|++..+ ++++|.+++....-. ..+..++...+ +.++++|+||
T Consensus 74 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 138 (201)
T 2gco_A 74 ELALWDTAGQEDY-------------DRLRPLSYPDTD-VILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNK 138 (201)
T ss_dssp EEEEECCCCSGGG-------------TTTGGGGCTTCS-EEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEEC
T ss_pred EEEEEECCCchhH-------------HHHHHHhcCCCC-EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEec
Confidence 5899999995321 233445788877 455555554432211 12334444433 6899999999
Q ss_pred CCCCCCc
Q 003355 225 LDIMDRG 231 (827)
Q Consensus 225 ~D~~~~~ 231 (827)
+|+.+..
T Consensus 139 ~Dl~~~~ 145 (201)
T 2gco_A 139 KDLRQDE 145 (201)
T ss_dssp GGGTTCH
T ss_pred HHhhcCc
Confidence 9998753
No 112
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.91 E-value=4.6e-09 Score=104.63 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=68.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhc
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (827)
.+|+|+|..++|||||+++|++..+ +.....++......
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~---------------------------------------- 57 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAV---------------------------------------- 57 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEE----------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEE----------------------------------------
Confidence 4899999999999999999998764 22221111111000
Q ss_pred CCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH----
Q 003355 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---- 203 (827)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d---- 203 (827)
.+.+ ......+.|+||||..+- +.+...|++..+ ++++|.++.....-..
T Consensus 58 -----------~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~ 111 (194)
T 2atx_A 58 -----------SVTV-GGKQYLLGLYDTAGQEDY-------------DRLRPLSYPMTD-VFLICFSVVNPASFQNVKEE 111 (194)
T ss_dssp -----------EEES-SSCEEEEEEECCCCSSSS-------------TTTGGGGCTTCS-EEEEEEETTCHHHHHHHHHT
T ss_pred -----------EEEE-CCEEEEEEEEECCCCcch-------------hHHHHHhcCCCC-EEEEEEECCCHHHHHHHHHH
Confidence 0000 001135889999997532 123446788887 4555555554322111
Q ss_pred HHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 204 ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 204 ~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
.+..++...+ +.++++|+||+|+.+..
T Consensus 112 ~~~~~~~~~~-~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 112 WVPELKEYAP-NVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp HHHHHHHHST-TCCEEEEEECTTSTTCH
T ss_pred HHHHHHHhCC-CCCEEEEEEChhhcccc
Confidence 2233444333 68999999999998753
No 113
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.90 E-value=1.9e-09 Score=104.49 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
+.+|+|+|..++|||||+|+|++..+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccC
Confidence 45899999999999999999998754
No 114
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.90 E-value=4.4e-09 Score=103.36 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=67.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+.... .+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~t~-------------------------------- 50 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTK--------------PTI-------------------------------- 50 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEEC--------------SST--------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccC--------------CcC--------------------------------
Confidence 4578999999999999999999976541100 000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
++. ...+.+. ...+.++||||..+. +.+...|+...+ ++++|.+++....-....
T Consensus 51 ------~~~--~~~~~~~---~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~ 105 (183)
T 1moz_A 51 ------GFN--VETLSYK---NLKLNVWDLGGQTSI-------------RPYWRCYYADTA-AVIFVVDSTDKDRMSTAS 105 (183)
T ss_dssp ------TCC--EEEEEET---TEEEEEEEEC----C-------------CTTGGGTTTTEE-EEEEEEETTCTTTHHHHH
T ss_pred ------ccc--eEEEEEC---CEEEEEEECCCCHhH-------------HHHHHHHhccCC-EEEEEEECCCHHHHHHHH
Confidence 000 0011111 246899999997532 123346777776 566666665543333333
Q ss_pred HHHHHhC----CCCCceEEeeecCCCCCC
Q 003355 206 QIAGIAD----PDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~d----p~g~rtIgVlTK~D~~~~ 230 (827)
.....+. ..+.++++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 106 KELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp HHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 3333332 357899999999999764
No 115
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.90 E-value=2.3e-09 Score=107.65 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=67.6
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+.+......+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 62 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLG-------------------------------------------- 62 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCcc--------------------------------------------
Confidence 457899999999999999999998875211100000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH--
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-- 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d-- 203 (827)
.+.....+.+. .....+.|+||||... ...+...|++..+ ++++|.++.....-.+
T Consensus 63 -------~~~~~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d-~iilv~d~~~~~s~~~~~ 120 (199)
T 2p5s_A 63 -------VDFQMKTLIVD-GERTVLQLWDTAGQER-------------FRSIAKSYFRKAD-GVLLLYDVTCEKSFLNIR 120 (199)
T ss_dssp ---------CEEEEEEET-TEEEEEEEEECTTCTT-------------CHHHHHHHHHHCS-EEEEEEETTCHHHHHTHH
T ss_pred -------ceeEEEEEEEC-CEEEEEEEEECCCCcc-------------hhhhHHHHHhhCC-EEEEEEECCChHHHHHHH
Confidence 00000011111 1123589999999532 2345667888777 4555555554322222
Q ss_pred -HHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 204 -ALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 204 -~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
.+..++.....+.++|+|+||+|+.+
T Consensus 121 ~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 121 EWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp HHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECccccc
Confidence 23344555555789999999999964
No 116
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.90 E-value=8.8e-10 Score=108.59 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=36.3
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---HHHHHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~---l~la~~~dp~g~rtIgVlTK 224 (827)
..+.|+||||.. ....+...|++..+ ++++|.+++...+-... +..+......+.++++|+||
T Consensus 57 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 122 (183)
T 2fu5_C 57 IKLQIWDTAGQE-------------RFRTITTAYYRGAM-GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122 (183)
T ss_dssp EEEEEEEC----------------------CCTTTTTCS-EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEcCCCCh-------------hhhhhHHHHHhcCC-EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 368999999953 23344556888877 45555665543222222 22333333456899999999
Q ss_pred CCCCCC
Q 003355 225 LDIMDR 230 (827)
Q Consensus 225 ~D~~~~ 230 (827)
+|+.+.
T Consensus 123 ~Dl~~~ 128 (183)
T 2fu5_C 123 CDVNDK 128 (183)
T ss_dssp --CCSC
T ss_pred ccCCcc
Confidence 999753
No 117
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.89 E-value=3.5e-09 Score=105.91 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=24.4
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
...+|+|+|..++|||||+|+|++..+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~ 53 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRF 53 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 456899999999999999999998875
No 118
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.89 E-value=3.1e-09 Score=106.06 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=68.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+ +.....++......
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 62 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSH-------------------------------------- 62 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEE--------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEE--------------------------------------
Confidence 446899999999999999999999875 22221111110000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH--
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-- 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d-- 203 (827)
.+.+ ......+.|+||||... ...+...|++..+ ++++|.+++...+-.+
T Consensus 63 -------------~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 114 (194)
T 3reg_A 63 -------------VMKY-KNEEFILHLWDTAGQEE-------------YDRLRPLSYADSD-VVLLCFAVNNRTSFDNIS 114 (194)
T ss_dssp -------------EEEE-TTEEEEEEEEEECCSGG-------------GTTTGGGGCTTCS-EEEEEEETTCHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCcHH-------------HHHHhHhhccCCc-EEEEEEECCCHHHHHHHH
Confidence 0000 01112579999999432 2344556888887 4555555554322222
Q ss_pred --HHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 204 --ALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 204 --~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+...+... .+.++|+|+||+|+.+.
T Consensus 115 ~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 115 TKWEPEIKHYI-DTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp HTHHHHHHHHC-TTSEEEEEEECGGGCCT
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhccC
Confidence 223333333 35899999999999863
No 119
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.89 E-value=4.3e-09 Score=105.48 Aligned_cols=117 Identities=13% Similarity=0.108 Sum_probs=65.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+++|++..+ +.....+|......
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 59 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSA-------------------------------------- 59 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEE--------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEE--------------------------------------
Confidence 456899999999999999999998874 32222222111000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~- 204 (827)
.+.+. .....+.|+||||..+-. .+...|+...+ ++++|.+++....-.++
T Consensus 60 -------------~~~~~-~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~ 111 (201)
T 2q3h_A 60 -------------VVSVD-GRPVRLQLCDTAGQDEFD-------------KLRPLCYTNTD-IFLLCFSVVSPSSFQNVS 111 (201)
T ss_dssp -------------EEEET-TEEEEEEEEECCCSTTCS-------------SSGGGGGTTCS-EEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEC-CEEEEEEEEECCCCHHHH-------------HHhHhhcCCCc-EEEEEEECCCHHHHHHHH
Confidence 00010 011257899999975321 22345788777 55555665543322222
Q ss_pred ---HHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 205 ---LQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 ---l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+..++...+ +.++|+|+||+|+.+.
T Consensus 112 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 112 EKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 222333333 6899999999999864
No 120
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.88 E-value=7.3e-09 Score=104.97 Aligned_cols=118 Identities=18% Similarity=0.156 Sum_probs=68.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..++|+|+|..++|||||+++|++..+.+... +|... .
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~--~~~~~-------------~--------------------------- 43 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT--SITDS-------------S--------------------------- 43 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC--CCSCE-------------E---------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC--Cccee-------------e---------------------------
Confidence 45789999999999999999999887522211 11000 0
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHH-HHHHHhcCCccEEEeecCCCCccc-chH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRT-MIMSYIKQPSCLILAVTPANSDLA-NSD 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~-lv~~yi~~~~~iIL~V~~a~~d~~-~~d 203 (827)
..+.+.......+.||||||.. ..+. +...|++..+. +++|+++..... ...
T Consensus 44 ------------~~~~~~~~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~-~i~v~d~~~~~~~~~~ 97 (214)
T 2fh5_B 44 ------------AIYKVNNNRGNSLTLIDLPGHE-------------SLRFQLLDRFKSSARA-VVFVVDSAAFQREVKD 97 (214)
T ss_dssp ------------EEEECSSTTCCEEEEEECCCCH-------------HHHHHHHHHHGGGEEE-EEEEEETTTHHHHHHH
T ss_pred ------------EEEEecCCCccEEEEEECCCCh-------------hHHHHHHHHHHhhCCE-EEEEEECCCcCHHHHH
Confidence 0011111112368999999953 2333 66778888874 455555543111 111
Q ss_pred HHHHHH----H--hCCCCCceEEeeecCCCCCCc
Q 003355 204 ALQIAG----I--ADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 204 ~l~la~----~--~dp~g~rtIgVlTK~D~~~~~ 231 (827)
...... . ....+.++++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 98 VAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 222211 1 234468999999999998643
No 121
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.88 E-value=3.4e-09 Score=104.24 Aligned_cols=68 Identities=19% Similarity=0.077 Sum_probs=42.4
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH----HHHHHHHhCCCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD----ALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d----~l~la~~~dp~g~rtIgVlTK 224 (827)
.+.|+||||...- +.+...|+...+ ++++|.+++...+-.+ .+..++...+ +.++++|+||
T Consensus 54 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 118 (186)
T 1mh1_A 54 NLGLWDTAGQEDY-------------DRLRPLSYPQTD-VSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTK 118 (186)
T ss_dssp EEEEECCCCSGGG-------------TTTGGGGCTTCS-EEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEEC
T ss_pred EEEEEECCCCHhH-------------HHHHHHhccCCc-EEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEc
Confidence 5789999997432 233446788777 4555556554322222 2333444434 6899999999
Q ss_pred CCCCCCc
Q 003355 225 LDIMDRG 231 (827)
Q Consensus 225 ~D~~~~~ 231 (827)
+|+.+..
T Consensus 119 ~Dl~~~~ 125 (186)
T 1mh1_A 119 LDLRDDK 125 (186)
T ss_dssp HHHHTCH
T ss_pred ccccccc
Confidence 9998643
No 122
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.87 E-value=3.3e-09 Score=105.24 Aligned_cols=114 Identities=19% Similarity=0.145 Sum_probs=68.0
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+... .+|..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~------------------------------------------ 55 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTT---VPTVG------------------------------------------ 55 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEE---CSSTT------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCc---CCCCc------------------------------------------
Confidence 457899999999999999999987764210 00100
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
+. ...+.+. ...+.|+||||..+.. .+...|++..+ ++++|++++....-..+.
T Consensus 56 -------~~--~~~~~~~---~~~~~~~Dt~G~~~~~-------------~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~ 109 (189)
T 2x77_A 56 -------VN--LETLQYK---NISFEVWDLGGQTGVR-------------PYWRCYFSDTD-AVIYVVDSTDRDRMGVAK 109 (189)
T ss_dssp -------CC--EEEEEET---TEEEEEEEECCSSSSC-------------CCCSSSSTTCC-EEEEEEETTCCTTHHHHH
T ss_pred -------eE--EEEEEEC---CEEEEEEECCCCHhHH-------------HHHHHHhhcCC-EEEEEEeCCCHHHHHHHH
Confidence 00 0011111 2468999999975332 11235777777 555566665442222222
Q ss_pred HHHHH----hCCCCCceEEeeecCCCCCC
Q 003355 206 QIAGI----ADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~----~dp~g~rtIgVlTK~D~~~~ 230 (827)
..... ....+.++++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 110 HELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp HHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 22222 22347899999999999864
No 123
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.87 E-value=3.2e-09 Score=107.41 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=23.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.+|+|+|..++|||||+|+|++..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~ 50 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEF 50 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999998875
No 124
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.87 E-value=7.3e-09 Score=105.48 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=56.8
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|+|..++|||||+|+|++..+ +.....++.....
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 72 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYM---------------------------------------- 72 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEE----------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEE----------------------------------------
Confidence 45899999999999999999998865 2221111110000
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH---
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d--- 203 (827)
..+.+.+ ....+.|+||||.. ....+...|+...+ ++++|.+++...+-..
T Consensus 73 -----------~~~~~~~-~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~ 126 (214)
T 2j1l_A 73 -----------VNLQVKG-KPVHLHIWDTAGQD-------------DYDRLRPLFYPDAS-VLLLCFDVTSPNSFDNIFN 126 (214)
T ss_dssp -----------EEEEETT-EEEEEEEEEC----------------------------CEE-EEEEEEETTCHHHHHHHHH
T ss_pred -----------EEEEECC-EEEEEEEEECCCch-------------hhhHHHHHHhccCC-EEEEEEECcCHHHHHHHHH
Confidence 0011100 11258999999943 23345556888777 4555556554322222
Q ss_pred -HHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 204 -ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 204 -~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
.+..++... .+.++|+|+||+|+.+..
T Consensus 127 ~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 127 RWYPEVNHFC-KKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp THHHHHHHHC-SSCCEEEEEECGGGGSCH
T ss_pred HHHHHHHHhC-CCCCEEEEEEChhhhccc
Confidence 122333333 358999999999998643
No 125
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.86 E-value=2.4e-09 Score=118.75 Aligned_cols=122 Identities=18% Similarity=0.174 Sum_probs=77.4
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..++|++||.+|+|||||+|+|+|.+......-.||+-|+.-.+.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~----------------------------------- 115 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIR----------------------------------- 115 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEE-----------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEE-----------------------------------
Confidence 457999999999999999999999875444555677777432211
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
+ + ...+.|+||||+...+..+ ......+...++..+ +||+|++++..+..-+.+
T Consensus 116 ----------------~--~-~~~i~l~D~pGl~~~a~~~------~~~g~~~l~~i~~ad-~il~vvD~~~p~~~~~~i 169 (376)
T 4a9a_A 116 ----------------Y--K-GAKIQMLDLPGIIDGAKDG------RGRGKQVIAVARTCN-LLFIILDVNKPLHHKQII 169 (376)
T ss_dssp ----------------E--T-TEEEEEEECGGGCCC-----------CHHHHHHHHHHHCS-EEEEEEETTSHHHHHHHH
T ss_pred ----------------e--C-CcEEEEEeCCCccCCchhh------hHHHHHHHHHHHhcC-ccccccccCccHHHHHHH
Confidence 0 0 1247899999998654221 112233445666665 888888888655443321
Q ss_pred -HHHHHhCC--CCCceEEeeecCCCC
Q 003355 206 -QIAGIADP--DGYRTIGIITKLDIM 228 (827)
Q Consensus 206 -~la~~~dp--~g~rtIgVlTK~D~~ 228 (827)
.-+..++. ..++.++|+||.|.-
T Consensus 170 ~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 170 EKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHhhHhhccCChhhhhhHhhhh
Confidence 12222322 246789999999974
No 126
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.86 E-value=1e-08 Score=103.24 Aligned_cols=114 Identities=16% Similarity=0.185 Sum_probs=65.9
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
....+|+|+|..++|||||+++|++..+ +. -..|..+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~--~~~t~~~---------------------------------------- 59 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRL-GQ--HVPTLHP---------------------------------------- 59 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC---------CCCCC----------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCC-Cc--cCCCCCc----------------------------------------
Confidence 4556899999999999999999998764 10 0011000
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
....+.+.+ ..+.++||||... .+.+...|++..+ ++++|.++....+-...
T Consensus 60 -----------~~~~~~~~~---~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d-~~i~v~D~~~~~s~~~~ 111 (198)
T 1f6b_A 60 -----------TSEELTIAG---MTFTTFDLGGHIQ-------------ARRVWKNYLPAIN-GIVFLVDCADHERLLES 111 (198)
T ss_dssp -----------SCEEEEETT---EEEEEEEECC-----------------CCGGGGGGGGCS-EEEEEEETTCGGGHHHH
T ss_pred -----------eeEEEEECC---EEEEEEECCCcHh-------------hHHHHHHHHhcCC-EEEEEEECCCHHHHHHH
Confidence 001122211 4689999999532 2234557888887 45555565543222222
Q ss_pred HHHHHHh----CCCCCceEEeeecCCCCC
Q 003355 205 LQIAGIA----DPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 l~la~~~----dp~g~rtIgVlTK~D~~~ 229 (827)
......+ ...+.++++|+||+|+..
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 112 KEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 2222222 235789999999999975
No 127
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.86 E-value=2.2e-08 Score=99.10 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=70.0
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
-...+|+|+|..++|||||+++|++..+-.. .| +.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-------~~-------t~------------------------------- 48 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-------TP-------TQ------------------------------- 48 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-------EE-------ET-------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-------cC-------cC-------------------------------
Confidence 3567999999999999999999998753100 00 00
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~ 204 (827)
++. ...+.+. ...+.++||||.. ..+.+...|+...+++ ++|.++....+-...
T Consensus 49 -------g~~--~~~~~~~---~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~-i~v~d~~~~~s~~~~ 102 (181)
T 1fzq_A 49 -------GFN--IKSVQSQ---GFKLNVWDIGGQR-------------KIRPYWRSYFENTDIL-IYVIDSADRKRFEET 102 (181)
T ss_dssp -------TEE--EEEEEET---TEEEEEEECSSCG-------------GGHHHHHHHHTTCSEE-EEEEETTCGGGHHHH
T ss_pred -------CeE--EEEEEEC---CEEEEEEECCCCH-------------HHHHHHHHHhCCCCEE-EEEEECcCHHHHHHH
Confidence 000 0011111 2368999999953 2345566788888744 555555543222222
Q ss_pred HHHHHHh----CCCCCceEEeeecCCCCCC
Q 003355 205 LQIAGIA----DPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 l~la~~~----dp~g~rtIgVlTK~D~~~~ 230 (827)
......+ ...+.++++|+||+|+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 103 GQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp HHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 2233322 2246899999999999864
No 128
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.85 E-value=1.1e-08 Score=102.49 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=69.6
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||++.|.|. +.+. . |..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~-~---~~~------------------------------------------ 51 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK-MSPN-E---TLF------------------------------------------ 51 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC-CCGG-G---GGG------------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc-CCCc-c---eee------------------------------------------
Confidence 4678999999999999999999986 3221 0 000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHH---HHHhcCCccEEEeecCCCCcccc-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMI---MSYIKQPSCLILAVTPANSDLAN- 201 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv---~~yi~~~~~iIL~V~~a~~d~~~- 201 (827)
..+....+...+.......+.|+||||..+-. .+. ..|++..+++ ++|.+++.....
T Consensus 52 -----~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------~~~~~~~~~~~~~~~~-i~v~d~~~~~~~~ 112 (196)
T 3llu_A 52 -----LESTNKIYKDDISNSSFVNFQIWDFPGQMDFF-------------DPTFDYEMIFRGTGAL-IYVIDAQDDYMEA 112 (196)
T ss_dssp -----CCCCCSCEEEEECCTTSCCEEEEECCSSCCTT-------------CTTCCHHHHHHTCSEE-EEEEETTSCCHHH
T ss_pred -----eccccceeeeeccCCCeeEEEEEECCCCHHHH-------------hhhhhcccccccCCEE-EEEEECCCchHHH
Confidence 00111112222222233579999999964321 112 4678888755 555565554211
Q ss_pred -hHHHHHHHHh--CCCCCceEEeeecCCCCCC
Q 003355 202 -SDALQIAGIA--DPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 202 -~d~l~la~~~--dp~g~rtIgVlTK~D~~~~ 230 (827)
.....+...+ ...+.++++|.||+|+.+.
T Consensus 113 ~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 1222333333 2346899999999999864
No 129
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.84 E-value=3.1e-09 Score=106.01 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
...+|+|+|..++|||||+|+|++..+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~ 33 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF 33 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC
Confidence 456899999999999999999998765
No 130
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.84 E-value=1.7e-08 Score=100.35 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
..-+|+|+|..++|||||+|.|++..|
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345799999999999999999998865
No 131
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.84 E-value=1.3e-08 Score=101.68 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=68.0
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+++|++..+-.. .+|..+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~---~~t~~~~---------------------------------------- 58 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATL---QPTWHPT---------------------------------------- 58 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCC---CCCCSCE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcc---ccCCCCC----------------------------------------
Confidence 445899999999999999999998765210 1111110
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
.-.+.+.+ ..+.++||||.... +.+...|++..+ ++++|.+++...+-....
T Consensus 59 -----------~~~~~~~~---~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 110 (190)
T 1m2o_B 59 -----------SEELAIGN---IKFTTFDLGGHIQA-------------RRLWKDYFPEVN-GIVFLVDAADPERFDEAR 110 (190)
T ss_dssp -----------EEEEEETT---EEEEEEECCCSGGG-------------TTSGGGGCTTCC-EEEEEEETTCGGGHHHHH
T ss_pred -----------eEEEEECC---EEEEEEECCCCHHH-------------HHHHHHHHhcCC-EEEEEEECCChHHHHHHH
Confidence 00111111 46899999997432 223456788877 555556665443322222
Q ss_pred HHHHHh----CCCCCceEEeeecCCCCC
Q 003355 206 QIAGIA----DPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 206 ~la~~~----dp~g~rtIgVlTK~D~~~ 229 (827)
.....+ ...+.++++|+||+|+.+
T Consensus 111 ~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 111 VELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 222222 235689999999999976
No 132
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.6e-09 Score=110.99 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=67.6
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+......+.+...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~----------------------------------------- 50 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEF----------------------------------------- 50 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSE-----------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee-----------------------------------------
Confidence 346899999999999999999998875321111000000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~- 204 (827)
....+.+. .....+.||||||...- ..+...|++..+ ++++|.++.....-.++
T Consensus 51 ----------~~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d-~vilV~D~~~~~s~~~~~ 105 (223)
T 3cpj_B 51 ----------ATRTLEIE-GKRIKAQIWDTAGQERY-------------RAITSAYYRGAV-GALIVYDISKSSSYENCN 105 (223)
T ss_dssp ----------EEEEEEET-TEEEEEEEECCTTTTTT-------------TCCCGGGTTTCC-EEEEEEC-CCHHHHHHHH
T ss_pred ----------EEEEEEEC-CEEEEEEEEECCCccch-------------hhhHHHHhccCC-EEEEEEeCCCHHHHHHHH
Confidence 00011111 11136899999996432 223446788777 55556666544332222
Q ss_pred --HHHHHHhCCCCCceEEeeecCCCCC
Q 003355 205 --LQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 205 --l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
+..+......+.++|+|+||+|+.+
T Consensus 106 ~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 106 HWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp HHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred HHHHHHHHhCCCCCeEEEEEECccccc
Confidence 2333444445789999999999975
No 133
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.80 E-value=5.6e-09 Score=103.90 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=23.4
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.-+|+|+|..++|||||+|+|++..|
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC
Confidence 35799999999999999999998875
No 134
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.80 E-value=2.5e-10 Score=114.69 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=65.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++..+........|...
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 70 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF----------------------------------------- 70 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSE-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceE-----------------------------------------
Confidence 346899999999999999999998865221111111000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
....+.+. .....+.||||||..... .+...|++..+ ++++|.++.....-....
T Consensus 71 ----------~~~~~~~~-~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 125 (199)
T 3l0i_B 71 ----------KIRTIELD-GKTIKLQIWDTAGQERFR-------------TITSSYYRGAH-GIIVVYDVTDQESFNNVK 125 (199)
T ss_dssp ----------EEEEEEET-TEEEEEEEECCTTCTTCC-------------CCSCC--CCCS-EEEECC-CCCSHHHHHHH
T ss_pred ----------EEEEEEEC-CEEEEEEEEECCCcHhHH-------------HHHHHHhhcCC-EEEEEEECCCHHHHHHHH
Confidence 00011110 011358999999954321 22335777777 555666665543322222
Q ss_pred ---HHHHHhCCCCCceEEeeecCCCCCC
Q 003355 206 ---QIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ---~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
..+......+.++|+|+||+|+.+.
T Consensus 126 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 126 QWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp HHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 3334444457899999999999753
No 135
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.79 E-value=1.7e-08 Score=102.49 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=25.6
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
-..+.|+|+|..++|||||+++|++..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999999875
No 136
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.77 E-value=3.1e-08 Score=115.42 Aligned_cols=68 Identities=12% Similarity=0.068 Sum_probs=43.7
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..+.|+||||..... .+...|+++.+ ++++|+++...-.....+..++...+ ..++|+|+||+|+
T Consensus 98 ~~~~i~Dt~G~e~~~-------------~~~~~~l~~~d-~ii~V~D~s~~~~~~~~~~~l~~~~~-~~pvilV~NK~Dl 162 (535)
T 3dpu_A 98 CLFHFWDFGGQEIMH-------------ASHQFFMTRSS-VYMLLLDSRTDSNKHYWLRHIEKYGG-KSPVIVVMNKIDE 162 (535)
T ss_dssp CEEEEECCCSCCTTT-------------TTCHHHHHSSE-EEEEEECGGGGGGHHHHHHHHHHHSS-SCCEEEEECCTTT
T ss_pred EEEEEEECCcHHHHH-------------HHHHHHccCCc-EEEEEEeCCCchhHHHHHHHHHHhCC-CCCEEEEEECCCc
Confidence 358999999943221 12235677765 66667777654333334445555544 4899999999999
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
.+.
T Consensus 163 ~~~ 165 (535)
T 3dpu_A 163 NPS 165 (535)
T ss_dssp CTT
T ss_pred ccc
Confidence 864
No 137
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.77 E-value=7.4e-09 Score=104.77 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=67.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+++|++..+ +.....++......
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 48 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSA-------------------------------------- 48 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEE--------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEE--------------------------------------
Confidence 345899999999999999999998765 22211111110000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH--
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-- 203 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d-- 203 (827)
.+.+ ......+.|+||||...-. .+...|++..+. +++|.++.....-..
T Consensus 49 -------------~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~-~ilv~d~~~~~s~~~~~ 100 (212)
T 2j0v_A 49 -------------NVAV-DGQIVNLGLWDTAGQEDYS-------------RLRPLSYRGADI-FVLAFSLISKASYENVL 100 (212)
T ss_dssp -------------EEEC-SSCEEEEEEECCCCCCCCC-------------C--CGGGTTCSE-EEEEEETTCHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCcHHHH-------------HHHHhhccCCCE-EEEEEECCCHHHHHHHH
Confidence 0011 0112368999999974321 233458888874 455555543322222
Q ss_pred --HHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 204 --ALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 204 --~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.+..++...+ +.++|+|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 101 KKWMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp HTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 2233444433 6899999999999764
No 138
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.75 E-value=4.6e-09 Score=107.26 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=40.8
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH---HHHHHHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d---~l~la~~~dp~g~rtIgVlTK~ 225 (827)
.+.||||||.... ..+...|+...+ ++++|.+++...+-.. .+..+.... .+.++|+|+||+
T Consensus 65 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~ 129 (221)
T 3gj0_A 65 KFNVWDTAGQEKF-------------GGLRDGYYIQAQ-CAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKV 129 (221)
T ss_dssp EEEEEEECSGGGT-------------SCCCHHHHTTCC-EEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECT
T ss_pred EEEEEeCCChHHH-------------hHHHHHHHhcCC-EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECC
Confidence 5899999995322 223346777777 5555556554332222 222333332 268999999999
Q ss_pred CCCCC
Q 003355 226 DIMDR 230 (827)
Q Consensus 226 D~~~~ 230 (827)
|+.+.
T Consensus 130 Dl~~~ 134 (221)
T 3gj0_A 130 DIKDR 134 (221)
T ss_dssp TSSSC
T ss_pred ccccc
Confidence 99764
No 139
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.75 E-value=1.8e-08 Score=101.12 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
...+|+|||..++|||||+++|+|..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998764
No 140
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.74 E-value=6e-09 Score=102.16 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=40.4
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH----HHHHHHHhCCCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD----ALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d----~l~la~~~dp~g~rtIgVlTK 224 (827)
.+.|+||||..+- +.+...|++..+ ++++|.++....+-.. .+..++...+ +.++++|+||
T Consensus 57 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 121 (182)
T 3bwd_D 57 NLGLWDTAGQEDY-------------NRLRPLSYRGAD-VFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTK 121 (182)
T ss_dssp -CEEECCCC-CTT-------------TTTGGGGGTTCS-EEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEEC
T ss_pred EEEEEECCCChhh-------------hhhHHhhccCCC-EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEec
Confidence 5789999996432 233446788777 4555556554322222 2333444433 6899999999
Q ss_pred CCCCCC
Q 003355 225 LDIMDR 230 (827)
Q Consensus 225 ~D~~~~ 230 (827)
+|+.+.
T Consensus 122 ~Dl~~~ 127 (182)
T 3bwd_D 122 LDLRDD 127 (182)
T ss_dssp HHHHTC
T ss_pred hhhhcC
Confidence 999764
No 141
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.73 E-value=2.6e-08 Score=100.93 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=23.7
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
..+|+|+|..++|||||+|+|++..+
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45799999999999999999999875
No 142
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.72 E-value=1.8e-08 Score=102.66 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=69.1
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
....+|+|+|..++|||||+++|++..+. .....++... +.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~-------------~~------------------------- 65 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFEN-------------YT------------------------- 65 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEE-------------EE-------------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeee-------------EE-------------------------
Confidence 34568999999999999999999988752 2111111000 00
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch--
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS-- 202 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~-- 202 (827)
..+.+. .....+.|+||||... ...+...|++..+.+ ++|.+++...+-.
T Consensus 66 -------------~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~ 117 (214)
T 3q3j_B 66 -------------ACLETE-EQRVELSLWDTSGSPY-------------YDNVRPLCYSDSDAV-LLCFDISRPETVDSA 117 (214)
T ss_dssp -------------EEEEC---CEEEEEEEEECCSGG-------------GTTTGGGGCTTCSEE-EEEEETTCTHHHHHH
T ss_pred -------------EEEEEC-CEEEEEEEEECCCCHh-------------HHHHHHHHcCCCeEE-EEEEECcCHHHHHHH
Confidence 000000 0113588999999542 223445688888754 5555555433222
Q ss_pred --HHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 203 --DALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 203 --d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
..+..++...+ +.++|+|.||+|+.+.
T Consensus 118 ~~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 118 LKKWRTEILDYCP-STRVLLIGCKTDLRTD 146 (214)
T ss_dssp HTHHHHHHHHHCT-TSEEEEEEECGGGGGC
T ss_pred HHHHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 22344444433 6899999999999864
No 143
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.71 E-value=2e-08 Score=111.24 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=42.0
Q ss_pred ccEEEEeCCCCCcCCCC-CCchHHHHHHHHHHHHHhcCC-------------ccEEEeecCCCCcccchHHHHHHHHhCC
Q 003355 148 LDITLVDLPGITKVPVG-EQPADIEARIRTMIMSYIKQP-------------SCLILAVTPANSDLANSDALQIAGIADP 213 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~-~q~~di~~~i~~lv~~yi~~~-------------~~iIL~V~~a~~d~~~~d~l~la~~~dp 213 (827)
..+++|||||+.+.... +.-..+...+......|+... ++++++|.++...+...+ ..+.+.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d-~~~~~~l~- 172 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIH- 172 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHH-HHHHHHTC-
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhH-HHHHHHhc-
Confidence 36899999999543211 111112223333334566532 235555555566666655 46667775
Q ss_pred CCCceEEeeecCCCCCC
Q 003355 214 DGYRTIGIITKLDIMDR 230 (827)
Q Consensus 214 ~g~rtIgVlTK~D~~~~ 230 (827)
.+.++|+|+||+|+...
T Consensus 173 ~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp S-SCEEEEEECCSSSCH
T ss_pred cCCCEEEEEECCCCCCH
Confidence 56899999999999864
No 144
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.71 E-value=5.6e-08 Score=109.15 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=42.6
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccc---hHHHHHHHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~d~l~la~~~dp~g~rtIgVlTK~ 225 (827)
.++||||||.. .+......++...+ ++++|++++..... .+.+.+++.+. ..+.|+|+||+
T Consensus 76 ~~~iiDtPGh~-------------~~~~~~~~~~~~~D-~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~ 139 (403)
T 3sjy_A 76 RISFIDAPGHE-------------VLMATMLSGAALMD-GAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKV 139 (403)
T ss_dssp EEEEEECCCCG-------------GGHHHHHHHHTTCS-EEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECG
T ss_pred eEEEEECCCcH-------------HHHHHHHHHHhhCC-EEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECc
Confidence 68999999942 22344556777777 55556667665422 22244444443 25799999999
Q ss_pred CCCCC
Q 003355 226 DIMDR 230 (827)
Q Consensus 226 D~~~~ 230 (827)
|+.+.
T Consensus 140 Dl~~~ 144 (403)
T 3sjy_A 140 DVVSK 144 (403)
T ss_dssp GGSCH
T ss_pred cccch
Confidence 99864
No 145
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.71 E-value=4e-08 Score=113.25 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=70.8
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
..+|+|||..|+|||||+|+|++..+. ....|+-+..-
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~---~~~~T~~~~~~--------------------------------------- 359 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSV---TTIPTVGFNVE--------------------------------------- 359 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC---CCCCCSSEEEE---------------------------------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC---CcCCccceeEE---------------------------------------
Confidence 458999999999999999999988742 11223222111
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
. +.. ....+.|+||||... ++.+...|++..+ ++|+|+++.....-.+...
T Consensus 360 ------------~--~~~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad-~~i~V~D~~~~~s~~~~~~ 410 (497)
T 3lvq_E 360 ------------T--VTY-KNVKFNVWDVGGQDK-------------IRPLWRHYYTGTQ-GLIFVVDCADRDRIDEARQ 410 (497)
T ss_dssp ------------E--EES-SSCEEEEEEECCCGG-------------GSGGGGGGGTTCC-EEEEEEETTCGGGHHHHHH
T ss_pred ------------E--EEe-CCEEEEEEECCCcHH-------------HHHHHHHHhccCC-EEEEEEECcchhHHHHHHH
Confidence 0 111 113689999999542 2334567888887 5666666665433333322
Q ss_pred HHHHh----CCCCCceEEeeecCCCCCC
Q 003355 207 IAGIA----DPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 207 la~~~----dp~g~rtIgVlTK~D~~~~ 230 (827)
....+ ...+.++|+|+||+|+.+.
T Consensus 411 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 411 ELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 22222 2247899999999999753
No 146
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.70 E-value=4e-08 Score=107.37 Aligned_cols=111 Identities=18% Similarity=0.228 Sum_probs=65.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhhcC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (827)
+|+|+|..++|||||+++|++..+.. ...|.....
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~~~---~~pT~~~~~------------------------------------------ 201 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNV------------------------------------------ 201 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCCEE---EEEETTEEE------------------------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCCCC---cccccceEE------------------------------------------
Confidence 79999999999999999999887521 011111100
Q ss_pred CCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH-HH
Q 003355 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL-QI 207 (827)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l-~l 207 (827)
..+. . ....+.|+||||-. .+..+...|++..+ ++++|++++..-.-.... .+
T Consensus 202 ---------~~~~--~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad-~vilV~D~~~~~s~~~~~~~~ 255 (329)
T 3o47_A 202 ---------ETVE--Y-KNISFTVWDVGGQD-------------KIRPLWRHYFQNTQ-GLIFVVDSNDRERVNEAREEL 255 (329)
T ss_dssp ---------EEEE--E-TTEEEEEEECC------------------CCSHHHHHTTEE-EEEEEEETTCSSSHHHHHHHH
T ss_pred ---------EEEe--c-CcEEEEEEECCCCH-------------hHHHHHHHHhccCC-EEEEEEECCchHHHHHHHHHH
Confidence 0011 1 11368999999932 33445667888776 555566665432222222 22
Q ss_pred HHHhC---CCCCceEEeeecCCCCCC
Q 003355 208 AGIAD---PDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 208 a~~~d---p~g~rtIgVlTK~D~~~~ 230 (827)
...+. ..+.++|+|+||+|+.+.
T Consensus 256 ~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhhhccCCCeEEEEEECccCCcc
Confidence 22222 236889999999999864
No 147
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.68 E-value=5.8e-08 Score=110.31 Aligned_cols=146 Identities=18% Similarity=0.166 Sum_probs=74.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+++|..++|||||+|+|++..-.-....+. .+.......|+...+++-+.+....+
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~----------------~~~~~~~~~g~~~~~~a~~~d~~~~e--- 76 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLE----------------KYEREAKEKNRETWYLSWALDTNQEE--- 76 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHH----------------HHHHHHHhccccchhhhhhhccchhH---
Confidence 45689999999999999999998753110000000 00000000011111111111111111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCccc-----
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA----- 200 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~----- 200 (827)
...+++-+.....+..++ ..++||||||.. .+...+..++..++ ++|+|+++.....
T Consensus 77 ---r~~GiTid~~~~~~~~~~-~~~~iiDTPGh~-------------~f~~~~~~~~~~aD-~~ilVVDa~~g~~e~~~~ 138 (439)
T 3j2k_7 77 ---RDKGKTVEVGRAYFETEK-KHFTILDAPGHK-------------SFVPNMIGGASQAD-LAVLVISARKGEFETGFE 138 (439)
T ss_pred ---hhcCceEEEeEEEEecCC-eEEEEEECCChH-------------HHHHHHHhhHhhCC-EEEEEEECCCCccccccC
Confidence 112333333333344433 379999999942 23344456677776 5566667765532
Q ss_pred --chHHHHHHHHhCCCCCc-eEEeeecCCCCC
Q 003355 201 --NSDALQIAGIADPDGYR-TIGIITKLDIMD 229 (827)
Q Consensus 201 --~~d~l~la~~~dp~g~r-tIgVlTK~D~~~ 229 (827)
.+. ...+..+...+.+ .|+|+||+|+.+
T Consensus 139 ~~~qt-~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 139 KGGQT-REHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred CCchH-HHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 122 2333333334566 899999999975
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.67 E-value=3.5e-08 Score=113.52 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=73.0
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||+|+|++....-....+.|-. .... ..|+...++..+.+....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~------------~~~~----~~g~~~~~~~~~~d~~~~---- 91 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQ------------RESE----TMGKSSFKFAWIMDQTNE---- 91 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHC------------C-----------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHH------------HHHH----hcCCCcchhhhhhccchh----
Confidence 45689999999999999999998762100000000000 0000 001111111111111111
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc-------
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD------- 198 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d------- 198 (827)
....+++.+.....+..+. ..++||||||..+ +...+..|+...+ ++|+|++++..
T Consensus 92 --e~~~GiTi~~~~~~~~~~~-~~~~iiDTPG~~~-------------f~~~~~~~~~~aD-~~llVvDa~~g~~~~~~~ 154 (483)
T 3p26_A 92 --ERERGVTVSICTSHFSTHR-ANFTIVDAPGHRD-------------FVPNAIMGISQAD-MAILCVDCSTNAFESGFD 154 (483)
T ss_dssp -----CCSSCCCCEEEEECSS-CEEEEECCCCCGG-------------GHHHHHHHHTTCS-EEEEEEECCC------CC
T ss_pred --HhhcCcceEeeeEEEecCC-ceEEEEECCCcHH-------------HHHHHHHhhhhCC-EEEEEEECCCCccccccc
Confidence 1123444444444554443 5799999999742 3345567888887 55555666553
Q ss_pred ccchH--HHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 199 LANSD--ALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 199 ~~~~d--~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+..+. .+.+++.+. ..+.|+|+||+|+.+.
T Consensus 155 ~~~qt~e~~~~~~~~~--~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 155 LDGQTKEHMLLASSLG--IHNLIIAMNKMDNVDW 186 (483)
T ss_dssp CCHHHHHHHHHHHHTT--CCCEEEEEECGGGGTT
T ss_pred hhhhHHHHHHHHHHcC--CCcEEEEEECcCcccc
Confidence 22222 233444332 2469999999999863
No 149
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.67 E-value=1e-07 Score=109.59 Aligned_cols=65 Identities=28% Similarity=0.245 Sum_probs=43.8
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH--HHHHHHHhCCCCCceEEeeecC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--ALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d--~l~la~~~dp~g~rtIgVlTK~ 225 (827)
..++||||||.. .+...+..++...+ ++++|++++.....+. .+.+++. .+.+.|+|+||+
T Consensus 73 ~~i~iiDtPGh~-------------~~~~~~~~~~~~aD-~~ilVvda~~g~~~qt~e~l~~~~~---~~ip~IvviNK~ 135 (482)
T 1wb1_A 73 YRITLVDAPGHA-------------DLIRAVVSAADIID-LALIVVDAKEGPKTQTGEHMLILDH---FNIPIIVVITKS 135 (482)
T ss_dssp EEEEECCCSSHH-------------HHHHHHHHHTTSCC-EEEEEEETTTCSCHHHHHHHHHHHH---TTCCBCEEEECT
T ss_pred EEEEEEECCChH-------------HHHHHHHHHHhhCC-EEEEEEecCCCccHHHHHHHHHHHH---cCCCEEEEEECC
Confidence 468999999942 33344557778777 5566667766544333 2344444 468889999999
Q ss_pred CCCC
Q 003355 226 DIMD 229 (827)
Q Consensus 226 D~~~ 229 (827)
|+.+
T Consensus 136 Dl~~ 139 (482)
T 1wb1_A 136 DNAG 139 (482)
T ss_dssp TSSC
T ss_pred Cccc
Confidence 9986
No 150
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.11 E-value=2.5e-09 Score=107.74 Aligned_cols=68 Identities=18% Similarity=0.067 Sum_probs=41.4
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH-HHHHHhCCC--CCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL-QIAGIADPD--GYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l-~la~~~dp~--g~rtIgVlTK~ 225 (827)
.+.|+||||.. ....+...|++..+. +++|.+++....-.+.. .+...+... +.++|+|+||+
T Consensus 79 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~-iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~ 144 (204)
T 3th5_A 79 NLGLWDTAGQE-------------DYDRLRPLSYPQTDV-FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 144 (204)
Confidence 57799999953 233455567887774 45555554432222221 233333322 68899999999
Q ss_pred CCCCC
Q 003355 226 DIMDR 230 (827)
Q Consensus 226 D~~~~ 230 (827)
|+.+.
T Consensus 145 Dl~~~ 149 (204)
T 3th5_A 145 DLRDD 149 (204)
Confidence 99864
No 151
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.63 E-value=9.7e-08 Score=112.69 Aligned_cols=146 Identities=18% Similarity=0.209 Sum_probs=75.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|||..++|||||+|+|++.... +..+.. ..+.......|+...++..+......+..
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~-----i~~~~i-----------~~~~~~~~~~g~~~~~~a~~~d~~~~e~~- 228 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNI-----VNQSQL-----------RKLQRESETMGKSSFKFAWIMDQTNEERE- 228 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSC-----SCCHHH-----------HHHHHHSSCSSSSCCSSSHHHHHHHHHHH-
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCC-----ccHHHH-----------HHHHhhhhhccccccceeeeeccchhhhh-
Confidence 4668999999999999999999987421 000000 00000000012211222223222222211
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc-------
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD------- 198 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d------- 198 (827)
. |++.+.....+..+ ...++||||||..+ +...+..++..++ ++|+|++++..
T Consensus 229 -~----GiTid~~~~~~~~~-~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD-~~llVVDa~~g~~e~~~~ 288 (611)
T 3izq_1 229 -R----GVTVSICTSHFSTH-RANFTIVDAPGHRD-------------FVPNAIMGISQAD-MAILCVDCSTNAFESGFD 288 (611)
T ss_dssp -T----TTCCSCSCCEEECS-SCEEEEEECCSSSC-------------HHHHHTTTSSCCS-EEEEEEECSHHHHHTTCC
T ss_pred -C----CeeEeeeeEEEecC-CceEEEEECCCCcc-------------cHHHHHHHHhhcC-ceEEEEECCCCcccccch
Confidence 1 22222222233332 24799999999632 2344556778877 55566666543
Q ss_pred ccchHHHHHHHHhCCCC-CceEEeeecCCCCC
Q 003355 199 LANSDALQIAGIADPDG-YRTIGIITKLDIMD 229 (827)
Q Consensus 199 ~~~~d~l~la~~~dp~g-~rtIgVlTK~D~~~ 229 (827)
+..+. ...+..+...+ .++|+|+||+|+.+
T Consensus 289 ~~~qt-~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 289 LDGQT-KEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp TTSHH-HHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred hhhHH-HHHHHHHHHcCCCeEEEEEecccccc
Confidence 12222 22333333334 45999999999986
No 152
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.63 E-value=2.2e-08 Score=112.17 Aligned_cols=38 Identities=26% Similarity=0.247 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEE
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~ 86 (827)
+|++||.+|+|||||+|+|+|........-.||+-|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~ 39 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANV 39 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCce
Confidence 69999999999999999999987322222336666543
No 153
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.63 E-value=2.8e-08 Score=115.20 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=48.8
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+- ...+..|++..+ .+|+|+++......+. ..+.+.+...+.++|+|+||+|+
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD-~allVvDa~~g~~~~t-~~~~~~~~~~~iPiivviNK~Dl 146 (528)
T 3tr5_A 82 YLINLLDTPGHADF-------------TEDTYRTLTAVD-SALMVIDAAKGVEPRT-IKLMEVCRLRHTPIMTFINKMDR 146 (528)
T ss_dssp EEEEEECCCCSTTC-------------CHHHHHGGGGCS-EEEEEEETTTCSCHHH-HHHHHHHHTTTCCEEEEEECTTS
T ss_pred EEEEEEECCCchhH-------------HHHHHHHHHhCC-EEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEeCCCC
Confidence 46999999997542 124567888877 5566667766655444 45666666678999999999999
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
...
T Consensus 147 ~~~ 149 (528)
T 3tr5_A 147 DTR 149 (528)
T ss_dssp CCS
T ss_pred ccc
Confidence 753
No 154
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.62 E-value=7e-08 Score=104.37 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=44.2
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH---HHHHHHhC--CCCCceEEee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIAD--PDGYRTIGII 222 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~---l~la~~~d--p~g~rtIgVl 222 (827)
..+.||||||..+ -.......+...|++..+ ++++|.++.....-.+. ......+. ..+.++++|+
T Consensus 52 ~~l~i~Dt~G~~~--------~~~~~~~~~~~~~~~~ad-~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~ 122 (307)
T 3r7w_A 52 MTLNLWDCGGQDV--------FMENYFTKQKDHIFQMVQ-VLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122 (307)
T ss_dssp EEEEEEEECCSHH--------HHHHHHTTTHHHHHTTCS-EEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEEEECCCcHH--------HhhhhhhhHHHHHhccCC-EEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4689999999531 112222456677888887 55556666554332222 11222221 2368999999
Q ss_pred ecCCCCC
Q 003355 223 TKLDIMD 229 (827)
Q Consensus 223 TK~D~~~ 229 (827)
||+|+.+
T Consensus 123 NK~Dl~~ 129 (307)
T 3r7w_A 123 HKMDLVQ 129 (307)
T ss_dssp ECGGGSC
T ss_pred ecccccc
Confidence 9999986
No 155
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.62 E-value=3.4e-08 Score=97.58 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=23.5
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
..+|+|+|..++|||||+|+|++..+
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45799999999999999999998865
No 156
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.61 E-value=5.6e-08 Score=99.80 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=42.8
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCccc--c-hHHHHHHHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA--N-SDALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~--~-~d~l~la~~~dp~g~rtIgVlTK 224 (827)
..+.|+||+|-. ..+.+...|++..+.+|++. +.+..-+ + ...+..++...+...++|+|.||
T Consensus 62 v~l~iwDtaGqe-------------~~~~l~~~~~~~a~~~ilv~-di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK 127 (216)
T 4dkx_A 62 IRLQLWDTAGLE-------------RFRSLIPSYIRDSAAAVVVY-DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127 (216)
T ss_dssp EEEEEECCSCTT-------------TCGGGHHHHHTTCSEEEEEE-ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEEC
T ss_pred EEEEEEECCCch-------------hhhhHHHHHhccccEEEEEe-ecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeec
Confidence 358899999943 33456678999888555554 3332211 1 12233344444456889999999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
.|+.+
T Consensus 128 ~Dl~~ 132 (216)
T 4dkx_A 128 TDLAD 132 (216)
T ss_dssp TTCGG
T ss_pred cchHh
Confidence 99875
No 157
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.60 E-value=6.9e-08 Score=108.43 Aligned_cols=135 Identities=21% Similarity=0.273 Sum_probs=78.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..|.|+|||..|||||||||+|+|..+...... ...| +
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~--~~~~---------------------~------------------- 78 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPAT--HTQP---------------------G------------------- 78 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC---------CCS---------------------S-------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCC--CCCc---------------------c-------------------
Confidence 456799999999999999999999854211100 0000 0
Q ss_pred hcCCCCcccccceEEEEecCC-cccEEEEeCCCCCcCCCCC-CchH----HHHHHHHHHHHHhcC-----------CccE
Q 003355 126 EAGGNKGVSDKQIRLKIFSPH-VLDITLVDLPGITKVPVGE-QPAD----IEARIRTMIMSYIKQ-----------PSCL 188 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~-~~~ltLVDlPGi~~~~~~~-q~~d----i~~~i~~lv~~yi~~-----------~~~i 188 (827)
.....+.+....+. .+.++++|+||+....... .... +..++...+..|..- -+++
T Consensus 79 -------~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~ 151 (427)
T 2qag_B 79 -------VQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVC 151 (427)
T ss_dssp -------CEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEE
T ss_pred -------ceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEE
Confidence 00001111112222 2479999999996532110 0111 233444444554320 1246
Q ss_pred EEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 189 ILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 189 IL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
+++|+|++.++...| +.+++.+. .+.++|+|+||+|.+.+.
T Consensus 152 v~fI~d~~~~l~~~D-ieilk~L~-~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 152 LYFIAPTGHSLKSLD-LVTMKKLD-SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp EEEECCCC---CHHH-HHHHHHTC-SCSEEEEEESCGGGSCHH
T ss_pred EEEEeCCCCCCCHHH-HHHHHHHh-hCCCEEEEEcchhccchH
Confidence 888999998888877 68899988 679999999999999753
No 158
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.59 E-value=1.4e-07 Score=101.84 Aligned_cols=117 Identities=19% Similarity=0.132 Sum_probs=70.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
...+|+|+|..++|||||++.+++..+. .....+|......
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~-------------------------------------- 194 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSA-------------------------------------- 194 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC-CSCCCCSEEEEEE--------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC-cccCCcccceeEE--------------------------------------
Confidence 4578999999999999999999987652 2222122111000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHH-
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~- 204 (827)
.+.+. .....+.|+||||.... ..+...|++..+ ++++|.+++...+-.+.
T Consensus 195 -------------~~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 246 (332)
T 2wkq_A 195 -------------NVMVD-GKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTD-VFLICFSLVSPASFHHVR 246 (332)
T ss_dssp -------------EEEET-TEEEEEEEEEECCCGGG-------------TTTGGGGCTTCS-EEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEC-CEEEEEEEEeCCCchhh-------------hHHHHHhccCCC-EEEEEEeCCCHHHHHHHH
Confidence 00000 01124779999996432 233446788877 55556666543332222
Q ss_pred ---HHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 205 ---LQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 205 ---l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+..++...+ +.++|+|+||+|+.+.
T Consensus 247 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 247 AKWYPEVRHHCP-NTPIILVGTKLDLRDD 274 (332)
T ss_dssp HTHHHHHHHHCT-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHhhCC-CCcEEEEEEchhcccc
Confidence 233444443 6899999999999764
No 159
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.58 E-value=2e-07 Score=109.24 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=44.6
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+ +...+..++...+ .+|+|+++......+.. .........+.+.|+|+||+|+
T Consensus 73 ~~inliDTPGh~d-------------F~~ev~r~l~~aD-~aILVVDa~~gv~~qt~-~~~~~a~~~~ipiIvviNKiDl 137 (600)
T 2ywe_A 73 YKLHLIDTPGHVD-------------FSYEVSRALAACE-GALLLIDASQGIEAQTV-ANFWKAVEQDLVIIPVINKIDL 137 (600)
T ss_dssp EEEEEECCCCSGG-------------GHHHHHHHHHTCS-EEEEEEETTTBCCHHHH-HHHHHHHHTTCEEEEEEECTTS
T ss_pred EEEEEEECCCcHh-------------HHHHHHHHHHhCC-EEEEEEECCCCccHHHH-HHHHHHHHCCCCEEEEEeccCc
Confidence 4689999999753 2234556777777 55556677766554442 2222222357899999999999
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
...
T Consensus 138 ~~a 140 (600)
T 2ywe_A 138 PSA 140 (600)
T ss_dssp TTC
T ss_pred ccc
Confidence 753
No 160
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.57 E-value=1.7e-07 Score=110.00 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=44.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+ +...+..++...+ .+++|+++......+.. .........+.+.|+|+||+|+
T Consensus 71 ~~l~liDTPGh~d-------------F~~ev~~~l~~aD-~aILVVDa~~gv~~qt~-~~~~~~~~~~ipiIvViNKiDl 135 (599)
T 3cb4_D 71 YQLNFIDTPGHVD-------------FSYEVSRSLAACE-GALLVVDAGQGVEAQTL-ANCYTAMEMDLEVVPVLNKIDL 135 (599)
T ss_dssp EEEEEEECCCCGG-------------GHHHHHHHHHHCS-EEEEEEETTTCCCTHHH-HHHHHHHHTTCEEEEEEECTTS
T ss_pred EEEEEEECCCchH-------------HHHHHHHHHHHCC-EEEEEEECCCCCCHHHH-HHHHHHHHCCCCEEEeeeccCc
Confidence 4689999999742 2234556777776 55666677666554443 2222222346899999999999
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
.+.
T Consensus 136 ~~a 138 (599)
T 3cb4_D 136 PAA 138 (599)
T ss_dssp TTC
T ss_pred ccc
Confidence 863
No 161
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.55 E-value=2.5e-07 Score=93.16 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=44.7
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D 226 (827)
.+.++||||+...... ....+.++..+..|++ .....+++|.++.......+ ..+.+.+...+.+.++|.||+|
T Consensus 73 ~~~l~Dt~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~nK~D 148 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVP---EEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDSNIAVLVLLTKAD 148 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHTTCCEEEEEECGG
T ss_pred CEEEEECcCCcccccC---HHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhH-HHHHHHHHHcCCCeEEEEeccc
Confidence 5789999998542111 1112345555556664 22235566666665443322 2333444445688999999999
Q ss_pred CCCCc
Q 003355 227 IMDRG 231 (827)
Q Consensus 227 ~~~~~ 231 (827)
+...+
T Consensus 149 ~~s~~ 153 (210)
T 1pui_A 149 KLASG 153 (210)
T ss_dssp GSCHH
T ss_pred CCCch
Confidence 98754
No 162
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.55 E-value=3.6e-07 Score=102.81 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=42.9
Q ss_pred ccEEEEeCCCCCcCCCC-CCchHHHHHHHHHHHHHh-----------cCCc--cEEEeecCCCCcccchHHHHHHHHhCC
Q 003355 148 LDITLVDLPGITKVPVG-EQPADIEARIRTMIMSYI-----------KQPS--CLILAVTPANSDLANSDALQIAGIADP 213 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~-~q~~di~~~i~~lv~~yi-----------~~~~--~iIL~V~~a~~d~~~~d~l~la~~~dp 213 (827)
+.++++||||+...... .....+...+......|+ .+++ ++++++.|....+...+ ..+.+.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHHHhc
Confidence 47999999999643211 111233333444444454 3333 23444444335566555 466777765
Q ss_pred CCCceEEeeecCCCCCC
Q 003355 214 DGYRTIGIITKLDIMDR 230 (827)
Q Consensus 214 ~g~rtIgVlTK~D~~~~ 230 (827)
+.++|+|+||+|++.+
T Consensus 167 -~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 167 -KVNIIPLIAKADTLTP 182 (418)
T ss_dssp -TSEEEEEEESTTSSCH
T ss_pred -cCcEEEEEEcccCccH
Confidence 7899999999999864
No 163
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.54 E-value=1.1e-08 Score=118.36 Aligned_cols=117 Identities=20% Similarity=0.260 Sum_probs=73.0
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
..|.|+|+|..++|||||+++|++..+.....+..|.-. +.+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i--------------~~~------------------------ 44 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI--------------GAF------------------------ 44 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT--------------TSC------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE--------------eEE------------------------
Confidence 368999999999999999999998764322222222111 000
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
.+..+....++||||||...- ..+...|+...+ ++++|++++.....+. .
T Consensus 45 ---------------~v~~~~g~~i~~iDTPGhe~f-------------~~~~~~~~~~aD-~vILVVDa~dg~~~qt-~ 94 (537)
T 3izy_P 45 ---------------LVSLPSGEKITFLDTPGHAAF-------------SAMRARGTQVTD-IVILVVAADDGVMKQT-V 94 (537)
T ss_dssp ---------------CBCSSCSSCCBCEECSSSCCT-------------TTSBBSSSBSBS-SCEEECBSSSCCCHHH-H
T ss_pred ---------------EEEeCCCCEEEEEECCChHHH-------------HHHHHHHHccCC-EEEEEEECCCCccHHH-H
Confidence 001111225899999996322 123335667666 5566667776554444 4
Q ss_pred HHHHHhCCCCCceEEeeecCCCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
..+..+...+.++|+|+||+|+.+.
T Consensus 95 e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 95 ESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp HHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred HHHHHHHHcCCcEEEEEeccccccc
Confidence 4555555567899999999999753
No 164
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.54 E-value=6.9e-07 Score=100.43 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=41.6
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcc---cchHHHHHHHHhCCCCCceEEeeecC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---ANSDALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---~~~d~l~la~~~dp~g~rtIgVlTK~ 225 (827)
.++||||||.. .+......++...+ ++++|++++... .+.+.+.+++.+. ..+.|+|+||+
T Consensus 84 ~i~iiDtPGh~-------------~f~~~~~~~~~~~D-~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~ 147 (410)
T 1kk1_A 84 RVSFIDAPGHE-------------ALMTTMLAGASLMD-GAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKI 147 (410)
T ss_dssp EEEEEECSSHH-------------HHHHHHHHCGGGCS-EEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECG
T ss_pred EEEEEECCChH-------------HHHHHHHhhhhhCC-EEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECc
Confidence 58999999931 22334445566666 566666777654 2223344555443 25789999999
Q ss_pred CCCCC
Q 003355 226 DIMDR 230 (827)
Q Consensus 226 D~~~~ 230 (827)
|+.+.
T Consensus 148 Dl~~~ 152 (410)
T 1kk1_A 148 ELVDK 152 (410)
T ss_dssp GGSCH
T ss_pred cCCCH
Confidence 99864
No 165
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.53 E-value=2.9e-07 Score=93.99 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
...+|+|||..++|||||+|.++|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34689999999999999999999854
No 166
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.52 E-value=8.2e-07 Score=99.78 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=41.3
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcc-c--chHHHHHHHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL-A--NSDALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~-~--~~d~l~la~~~dp~g~rtIgVlTK 224 (827)
..++||||||. +.+......++...+ ++++|++++... . +.+.+.+++.+. ..+.|+|+||
T Consensus 81 ~~i~iiDtPGh-------------~~f~~~~~~~~~~~D-~~ilVvda~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK 144 (408)
T 1s0u_A 81 RRVSFVDSPGH-------------ETLMATMLSGASLMD-GAILVIAANEPCPQPQTKEHLMALEILG--IDKIIIVQNK 144 (408)
T ss_dssp EEEEEEECSSH-------------HHHHHHHHTTCSCCS-EEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEEC
T ss_pred cEEEEEECCCH-------------HHHHHHHHHhHhhCC-EEEEEEECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEc
Confidence 36899999993 123333445555666 566666777654 2 223334444432 2478999999
Q ss_pred CCCCCC
Q 003355 225 LDIMDR 230 (827)
Q Consensus 225 ~D~~~~ 230 (827)
+|+.+.
T Consensus 145 ~Dl~~~ 150 (408)
T 1s0u_A 145 IDLVDE 150 (408)
T ss_dssp TTSSCT
T ss_pred cCCCCH
Confidence 999864
No 167
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.49 E-value=3.1e-07 Score=106.60 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=48.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+- ...+..|+...+ .+|+|+++......+. ..+.+.+...+.++|+|+||+|+
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD-~~IlVvDa~~g~~~~t-~~~~~~~~~~~ipiivviNK~Dl 146 (529)
T 2h5e_A 82 CLVNLLDTPGHEDF-------------SEDTYRTLTAVD-CCLMVIDAAKGVEDRT-RKLMEVTRLRDTPILTFMNKLDR 146 (529)
T ss_dssp EEEEEECCCCSTTC-------------CHHHHHGGGGCS-EEEEEEETTTCSCHHH-HHHHHHHTTTTCCEEEEEECTTS
T ss_pred eEEEEEECCCChhH-------------HHHHHHHHHHCC-EEEEEEeCCccchHHH-HHHHHHHHHcCCCEEEEEcCcCC
Confidence 47999999997532 133456888777 5555566665554433 56666677678999999999999
Q ss_pred CCCc
Q 003355 228 MDRG 231 (827)
Q Consensus 228 ~~~~ 231 (827)
....
T Consensus 147 ~~~~ 150 (529)
T 2h5e_A 147 DIRD 150 (529)
T ss_dssp CCSC
T ss_pred cccc
Confidence 8643
No 168
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.48 E-value=5.4e-07 Score=102.10 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=42.7
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH--HHHHHHHhCCCCCceEEeeecC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--ALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d--~l~la~~~dp~g~rtIgVlTK~ 225 (827)
..++||||||..+ +...+..|+...+ ++|+|++++.....+. .+.+++.+. ..+.|+|+||+
T Consensus 104 ~~~~iiDtpGh~~-------------f~~~~~~~~~~aD-~~ilVvDa~~g~~~qt~~~l~~~~~~~--~~~iIvviNK~ 167 (434)
T 1zun_B 104 RKFIIADTPGHEQ-------------YTRNMATGASTCD-LAIILVDARYGVQTQTRRHSYIASLLG--IKHIVVAINKM 167 (434)
T ss_dssp EEEEEEECCCSGG-------------GHHHHHHHHTTCS-EEEEEEETTTCSCHHHHHHHHHHHHTT--CCEEEEEEECT
T ss_pred ceEEEEECCChHH-------------HHHHHHHHHhhCC-EEEEEEECCCCCcHHHHHHHHHHHHcC--CCeEEEEEEcC
Confidence 4699999999532 2233446778777 5666667766554332 234454442 23589999999
Q ss_pred CCCCC
Q 003355 226 DIMDR 230 (827)
Q Consensus 226 D~~~~ 230 (827)
|+.+.
T Consensus 168 Dl~~~ 172 (434)
T 1zun_B 168 DLNGF 172 (434)
T ss_dssp TTTTS
T ss_pred cCCcc
Confidence 99863
No 169
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.48 E-value=7.9e-07 Score=98.62 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=20.3
Q ss_pred CCEEEEEccCCCCHHHHHHHHh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~ 68 (827)
.+.|+++|..++|||||+++|+
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3489999999999999999998
No 170
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.46 E-value=3e-07 Score=103.21 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=42.2
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCc-eEEeeecCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~r-tIgVlTK~D 226 (827)
..++||||||..+ +...+..++...+.+ ++|+++......+. ...+..+...+.+ .|+|+||+|
T Consensus 75 ~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~-ilVvda~~g~~~qt-~~~l~~~~~~~ip~iivviNK~D 139 (405)
T 2c78_A 75 RHYSHVDCPGHAD-------------YIKNMITGAAQMDGA-ILVVSAADGPMPQT-REHILLARQVGVPYIVVFMNKVD 139 (405)
T ss_dssp CEEEEEECCCSGG-------------GHHHHHHHHTTCSSE-EEEEETTTCCCHHH-HHHHHHHHHTTCCCEEEEEECGG
T ss_pred eEEEEEECCChHH-------------HHHHHHHHHHHCCEE-EEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEEECcc
Confidence 5799999999642 223445677778744 55556655543332 2333333334567 789999999
Q ss_pred CCC
Q 003355 227 IMD 229 (827)
Q Consensus 227 ~~~ 229 (827)
+.+
T Consensus 140 l~~ 142 (405)
T 2c78_A 140 MVD 142 (405)
T ss_dssp GCC
T ss_pred ccC
Confidence 985
No 171
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.43 E-value=3.6e-07 Score=90.33 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.+|+|+|..++|||||++.|+|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999985
No 172
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.42 E-value=6e-07 Score=89.93 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=23.7
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
..+|+|+|..|||||||++.|+|..+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46799999999999999999999875
No 173
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.41 E-value=2.7e-07 Score=110.57 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=46.2
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+-. ..+..+++..+ .+|+|+++......++ ..+.+.+...+.+.|+|+||+|+
T Consensus 75 ~~i~liDTPG~~df~-------------~~~~~~l~~aD-~~llVvDa~~g~~~~~-~~~~~~~~~~~~p~ilviNK~Dl 139 (693)
T 2xex_A 75 HRVNIIDTPGHVDFT-------------VEVERSLRVLD-GAVTVLDAQSGVEPQT-ETVWRQATTYGVPRIVFVNKMDK 139 (693)
T ss_dssp EEEEEECCCCCSSCC-------------HHHHHHHHHCS-EEEEEEETTTBSCHHH-HHHHHHHHHTTCCEEEEEECTTS
T ss_pred eeEEEEECcCCcchH-------------HHHHHHHHHCC-EEEEEECCCCCCcHHH-HHHHHHHHHcCCCEEEEEECCCc
Confidence 479999999986421 22445677676 6666667766555443 34444444457899999999999
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
...
T Consensus 140 ~~~ 142 (693)
T 2xex_A 140 LGA 142 (693)
T ss_dssp TTC
T ss_pred ccc
Confidence 864
No 174
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.41 E-value=8.9e-08 Score=112.44 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=42.8
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
.++||||||..+-. .+...++...+ ++++|+++...+..+. +..++.+...+.++|+|+||+|+.
T Consensus 71 ~i~liDTPGhe~F~-------------~~~~r~~~~aD-~aILVvDa~~Gv~~qT-~e~l~~l~~~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 71 GLFFIDTPGHEAFT-------------TLRKRGGALAD-LAILIVDINEGFKPQT-QEALNILRMYRTPFVVAANKIDRI 135 (594)
T ss_dssp EEEEECCCTTSCCT-------------TSBCSSSBSCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CEEEEECCCcHHHH-------------HHHHHHHhhCC-EEEEEEECCCCccHhH-HHHHHHHHHcCCeEEEEecccccc
Confidence 58999999974321 11224566666 6666677776654433 333333434578999999999997
Q ss_pred C
Q 003355 229 D 229 (827)
Q Consensus 229 ~ 229 (827)
.
T Consensus 136 ~ 136 (594)
T 1g7s_A 136 H 136 (594)
T ss_dssp T
T ss_pred c
Confidence 5
No 175
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.39 E-value=1.1e-06 Score=105.39 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=46.3
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+ +...+..+++..+ .+|+|+++......+. ..+.+.+...+.+.|+|+||+|+
T Consensus 82 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD-~aIlVvDa~~gv~~qt-~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVD-------------FTIEVERSMRVLD-GAVMVYCAVGGVQPQS-ETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccc-------------hHHHHHHHHHHCC-EEEEEEeCCCCCcHHH-HHHHHHHHHcCCCEEEEEeCCCc
Confidence 5799999999642 2344556777776 5555666666554333 34445555567899999999999
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
...
T Consensus 147 ~~~ 149 (704)
T 2rdo_7 147 MGA 149 (704)
T ss_pred ccc
Confidence 754
No 176
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.38 E-value=4.6e-08 Score=112.33 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=23.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
..|.|+|+|..++|||||+++|.+..+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v 29 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV 29 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC
Confidence 468999999999999999999987643
No 177
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.38 E-value=6.3e-07 Score=102.28 Aligned_cols=143 Identities=19% Similarity=0.270 Sum_probs=72.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCC-CCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRD-FLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~-~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (827)
....|+++|..++|||||+|+|++.. .++... + ... ... ..+. |+...++.-+.+....+..
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~-~~~------~~~--~~~~-------g~~~~~~a~~~d~~~~er~ 68 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-I-EKF------EKE--AAEL-------GKGSFKYAWVLDKLKAERE 68 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-H-HHH------HHH--GGGG-------SSSCCCHHHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-H-HHh------hhh--HHhc-------CCcchhhhhhhccchhHHh
Confidence 34689999999999999999999641 111000 0 000 000 0000 1111233323222222111
Q ss_pred hhcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcc-----
Q 003355 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL----- 199 (827)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~----- 199 (827)
.| ++-+.....+..+. ..++||||||.. .+...+..++...+ ++|+|+++....
T Consensus 69 --~G----iTi~~~~~~~~~~~-~~~~iiDtPGh~-------------~f~~~~~~~~~~aD-~~ilVvda~~g~~~~sf 127 (458)
T 1f60_A 69 --RG----ITIDIALWKFETPK-YQVTVIDAPGHR-------------DFIKNMITGTSQAD-CAILIIAGGVGEFEAGI 127 (458)
T ss_dssp --TT----CCCSCSCEEEECSS-EEEEEEECCCCT-------------THHHHHHHSSSCCS-EEEEEEECSHHHHHHHT
T ss_pred --cC----cEEEEEEEEEecCC-ceEEEEECCCcH-------------HHHHHHHhhhhhCC-EEEEEEeCCcCcccccc
Confidence 12 22222222333333 469999999953 22334556788887 555556666442
Q ss_pred ----cchHHHHHHHHhCCCCCc-eEEeeecCCCCC
Q 003355 200 ----ANSDALQIAGIADPDGYR-TIGIITKLDIMD 229 (827)
Q Consensus 200 ----~~~d~l~la~~~dp~g~r-tIgVlTK~D~~~ 229 (827)
.+.+.+.+++. .+.+ .|+|+||+|+.+
T Consensus 128 ~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 128 SKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp CTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred CcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 12222334443 3454 899999999984
No 178
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.36 E-value=9.1e-07 Score=99.08 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=42.3
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCc-eEEeeecCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~r-tIgVlTK~D 226 (827)
..++||||||.. .+...+..++...+ ++++|++++.....+. ...+..+...+.+ .|+|+||+|
T Consensus 66 ~~~~iiDtpG~~-------------~f~~~~~~~~~~aD-~~ilVvda~~g~~~qt-~e~l~~~~~~~vp~iivviNK~D 130 (397)
T 1d2e_A 66 RHYAHTDCPGHA-------------DYVKNMITGTAPLD-GCILVVAANDGPMPQT-REHLLLARQIGVEHVVVYVNKAD 130 (397)
T ss_dssp CEEEEEECSSHH-------------HHHHHHHHTSSCCS-EEEEEEETTTCSCHHH-HHHHHHHHHTTCCCEEEEEECGG
T ss_pred eEEEEEECCChH-------------HHHHHHHhhHhhCC-EEEEEEECCCCCCHHH-HHHHHHHHHcCCCeEEEEEECcc
Confidence 478999999942 23344567788887 5555566665544332 2222333334667 689999999
Q ss_pred CCC
Q 003355 227 IMD 229 (827)
Q Consensus 227 ~~~ 229 (827)
+.+
T Consensus 131 l~~ 133 (397)
T 1d2e_A 131 AVQ 133 (397)
T ss_dssp GCS
T ss_pred cCC
Confidence 985
No 179
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.35 E-value=3e-06 Score=93.20 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.7
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-..+.|+++|.+|||||||+|+|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999974
No 180
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.33 E-value=1.1e-07 Score=105.42 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=29.4
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 22 ~~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+..+-.+++.|...+. -.+|+++|.+|+|||||+|+|+|.
T Consensus 146 g~gi~~L~~~I~~~~~---------~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 146 GIGMAKVMEAINRYRE---------GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TBTHHHHHHHHHHHHT---------TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcc---------cCcEEEEcCCCCchHHHHHHHHhh
Confidence 4445555555554321 246999999999999999999987
No 181
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.33 E-value=1.5e-06 Score=95.85 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G 69 (827)
..+.|+|+|.+|+|||||+++|.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999974
No 182
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.32 E-value=9.6e-07 Score=88.23 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=22.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..+|+|||+.|+|||||+|.++|.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999974
No 183
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.31 E-value=9.9e-07 Score=93.58 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=50.1
Q ss_pred ccEEEEeCCCCCcCCCCCC-chHHHHHHHHHHHHHhc--------------CCccEEEeecCCCCcccchHHHHHHHHhC
Q 003355 148 LDITLVDLPGITKVPVGEQ-PADIEARIRTMIMSYIK--------------QPSCLILAVTPANSDLANSDALQIAGIAD 212 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q-~~di~~~i~~lv~~yi~--------------~~~~iIL~V~~a~~d~~~~d~l~la~~~d 212 (827)
+.++++|+||+.......+ ...+...+......++. ...+.++++.+....+...+ ..+++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH
Confidence 4789999999965432221 12333333322222222 12556666666667777777 67777777
Q ss_pred CCCCceEEeeecCCCCCCc
Q 003355 213 PDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 213 p~g~rtIgVlTK~D~~~~~ 231 (827)
.. ..+|.|+||+|.+.+.
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp TT-SEEEEEETTGGGSCHH
T ss_pred hc-CcEEEEEeccccCCHH
Confidence 66 8999999999999754
No 184
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.28 E-value=3.7e-06 Score=90.58 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=41.7
Q ss_pred ccEEEEeCCCCCcCCCC-CCchHHHHHHHHHHHHHhcCC-------------ccEEEeecCCCCcccchHHHHHHHHhCC
Q 003355 148 LDITLVDLPGITKVPVG-EQPADIEARIRTMIMSYIKQP-------------SCLILAVTPANSDLANSDALQIAGIADP 213 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~-~q~~di~~~i~~lv~~yi~~~-------------~~iIL~V~~a~~d~~~~d~l~la~~~dp 213 (827)
..++++||||+...... +.-..+...+......|+... .++++++.|....+...+ ..+.+.+..
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~-~~~l~~l~~ 154 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIHN 154 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH-HHHHHHHTT
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH-HHHHHHHHh
Confidence 47999999998432110 111122223333333555422 224444444343455544 467777754
Q ss_pred CCCceEEeeecCCCCCC
Q 003355 214 DGYRTIGIITKLDIMDR 230 (827)
Q Consensus 214 ~g~rtIgVlTK~D~~~~ 230 (827)
..++++|+||.|+...
T Consensus 155 -~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 155 -KVNIVPVIAKADTLTL 170 (301)
T ss_dssp -TSCEEEEECCGGGSCH
T ss_pred -cCCEEEEEEeCCCCCH
Confidence 4689999999999863
No 185
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.28 E-value=3.3e-07 Score=101.64 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=29.7
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCCC
Q 003355 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 22 ~~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
+..+-.+++.|...+. -.+|+++|.+|+|||||+|+|+|..
T Consensus 144 g~gi~~L~~~l~~~~~---------~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 144 GQGIAELADAIEYYRG---------GKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp CTTHHHHHHHHHHHHT---------TSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred CcCHHHHHhhhhhhcc---------cceEEEecCCCCChhHHHHHHHhhh
Confidence 3445555555554321 2469999999999999999999874
No 186
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.27 E-value=1.2e-06 Score=104.75 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=45.5
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+ +...+..+++..+ .+|+|+++......+. ..+.+.+...+.+.++|+||+|+
T Consensus 77 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD-~~ilVvDa~~g~~~~t-~~~~~~~~~~~~p~ivviNKiD~ 141 (691)
T 1dar_A 77 HRINIIDTPGHVD-------------FTIEVERSMRVLD-GAIVVFDSSQGVEPQS-ETVWRQAEKYKVPRIAFANKMDK 141 (691)
T ss_dssp EEEEEECCCSSTT-------------CHHHHHHHHHHCS-EEEEEEETTTCSCHHH-HHHHHHHHHTTCCEEEEEECTTS
T ss_pred eEEEEEECcCccc-------------hHHHHHHHHHHCC-EEEEEEECCCCcchhh-HHHHHHHHHcCCCEEEEEECCCc
Confidence 5799999999753 2234556777776 5555666665554433 23333444457899999999999
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
...
T Consensus 142 ~~~ 144 (691)
T 1dar_A 142 TGA 144 (691)
T ss_dssp TTC
T ss_pred ccC
Confidence 864
No 187
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.25 E-value=9.4e-07 Score=100.18 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=41.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc-------ccchHHHHHHHHhCCCC-CceE
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-------LANSDALQIAGIADPDG-YRTI 219 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-------~~~~d~l~la~~~dp~g-~rtI 219 (827)
..++||||||..+ +......|+...+ ++++|+++..+ +..+. ...+..+...+ .+.|
T Consensus 84 ~~~~iiDtpG~~~-------------f~~~~~~~~~~aD-~~ilVvDa~~gsfe~~~~~~~qt-~~~~~~~~~~~~~~ii 148 (435)
T 1jny_A 84 YFFTIIDAPGHRD-------------FVKNMITGASQAD-AAILVVSAKKGEYEAGMSVEGQT-REHIILAKTMGLDQLI 148 (435)
T ss_dssp CEEEECCCSSSTT-------------HHHHHHHTSSCCS-EEEEEEECSTTHHHHHHSTTCHH-HHHHHHHHHTTCTTCE
T ss_pred eEEEEEECCCcHH-------------HHHHHHhhhhhcC-EEEEEEECCCCccccccccchHH-HHHHHHHHHcCCCeEE
Confidence 4699999999642 2234556888887 45555566554 32222 22222222223 4689
Q ss_pred EeeecCCCCCC
Q 003355 220 GIITKLDIMDR 230 (827)
Q Consensus 220 gVlTK~D~~~~ 230 (827)
+|+||+|+.+.
T Consensus 149 vviNK~Dl~~~ 159 (435)
T 1jny_A 149 VAVNKMDLTEP 159 (435)
T ss_dssp EEEECGGGSSS
T ss_pred EEEEcccCCCc
Confidence 99999999873
No 188
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.23 E-value=1.4e-06 Score=86.97 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=23.7
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
...|+|+|..+||||||++.|+|..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999864
No 189
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.22 E-value=2.6e-07 Score=105.80 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G 69 (827)
....|+++|..++|||||+++|++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHHHHH
Confidence 456899999999999999999985
No 190
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.20 E-value=5e-08 Score=114.74 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.4
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..+|+|||..++|||||+|+|++.
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999999864
No 191
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.20 E-value=8.9e-07 Score=108.25 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=45.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..+.||||||..+- ...+..|++..+ .+|+|+++......+. ..+.+.+...+.+.|+|+||+|+
T Consensus 98 ~~i~liDTPG~~df-------------~~~~~~~l~~aD-~ailVvDa~~g~~~qt-~~~~~~~~~~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDF-------------SSEVTAALRVTD-GALVVVDTIEGVCVQT-ETVLRQALGERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSS-------------CHHHHHHHHTCS-EEEEEEETTTBSCHHH-HHHHHHHHHTTCEEEEEEECHHH
T ss_pred ceEEEEECcCchhh-------------HHHHHHHHHhCC-EEEEEEeCCCCCCHHH-HHHHHHHHHcCCCeEEEEECCCc
Confidence 46899999998642 234567888887 5555666766655444 34444444457899999999998
Q ss_pred C
Q 003355 228 M 228 (827)
Q Consensus 228 ~ 228 (827)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 6
No 192
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.19 E-value=1.1e-06 Score=92.17 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCCEEEEEccC---------CCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQ---------SSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~q---------ssGKSSlLnaL~G~ 70 (827)
...+|+|||.. ++|||||+|+|++.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 44589999999 99999999999984
No 193
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.16 E-value=7.7e-06 Score=91.91 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.7
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.+.|++||..||||||||++|+|..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 3669999999999999999999985
No 194
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.16 E-value=3.9e-06 Score=103.56 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=42.5
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchH--HHHHHHHhCCCCCc-eEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--ALQIAGIADPDGYR-TIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d--~l~la~~~dp~g~r-tIgVlTK 224 (827)
..++||||||.. .+...+..++...+ ++++|++++.....+. .+.+++. .+.+ .|+|+||
T Consensus 359 ~kI~IIDTPGHe-------------dF~~~mi~gas~AD-~aILVVDAtdGv~~QTrEhL~ll~~---lgIP~IIVVINK 421 (1289)
T 3avx_A 359 RHYAHVDCPGHA-------------DYVKNMITGAAQMD-GAILVVAATDGPMPQTREHILLGRQ---VGVPYIIVFLNK 421 (1289)
T ss_dssp CEEEEEECCCHH-------------HHHHHHHHTSCCCS-EEEEEEETTTCSCTTHHHHHHHHHH---HTCSCEEEEEEC
T ss_pred EEEEEEECCChH-------------HHHHHHHHHHhhCC-EEEEEEcCCccCcHHHHHHHHHHHH---cCCCeEEEEEee
Confidence 478999999942 23345556788887 5555566665543332 2344444 3567 6899999
Q ss_pred CCCCC
Q 003355 225 LDIMD 229 (827)
Q Consensus 225 ~D~~~ 229 (827)
+|+.+
T Consensus 422 iDLv~ 426 (1289)
T 3avx_A 422 CDMVD 426 (1289)
T ss_dssp CTTCC
T ss_pred ccccc
Confidence 99986
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.15 E-value=1.6e-06 Score=95.51 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=26.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccce
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p 84 (827)
.+|++||.+|+|||||+|+|+|..+.......||..|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 4799999999999999999999874222233456555
No 196
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.12 E-value=1.4e-05 Score=91.87 Aligned_cols=77 Identities=26% Similarity=0.242 Sum_probs=46.2
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCc-eEEeeecCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~r-tIgVlTK~D 226 (827)
.+++||||||..... ..+...+..+. .++ .++ .+++|+++..... +...++.+... .+ +++|+||+|
T Consensus 184 ~DvvIIDTpG~~~~~-----~~l~~el~~~~-~~i-~pd-~vllVvDa~~g~~---~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 184 FEIIIVDTSGRHKQE-----DSLFEEMLQVA-NAI-QPD-NIVYVMDASIGQA---CEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp CCEEEEEECCCCTTC-----HHHHHHHHHHH-HHH-CCS-EEEEEEETTCCTT---HHHHHHHHHHH-HCCCCEEEECTT
T ss_pred CcEEEEeCCCCcccc-----hhHHHHHHHHH-hhh-cCc-eEEEEEecccccc---HHHHHHHHHhh-cCceEEEEeCCc
Confidence 379999999987531 22322333332 233 555 5677777776532 35556555432 45 589999999
Q ss_pred CCCCcccHHH
Q 003355 227 IMDRGTDARN 236 (827)
Q Consensus 227 ~~~~~~~~~~ 236 (827)
....+..+..
T Consensus 252 ~~~~~g~~l~ 261 (504)
T 2j37_W 252 GHAKGGGALS 261 (504)
T ss_dssp SCCCCTHHHH
T ss_pred cccchHHHHH
Confidence 9866544333
No 197
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.09 E-value=8.6e-06 Score=97.13 Aligned_cols=132 Identities=19% Similarity=0.197 Sum_probs=74.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (827)
....|+|+|..++|||||+++|++........|.+ ..|....|+.....+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-----------------------~~g~~~~d~~~~e~~------- 57 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-----------------------EEGTTTTDYTPEAKL------- 57 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-----------------------GGTCCSSCCSHHHHH-------
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-----------------------cCCcccccCCHHHHh-------
Confidence 34679999999999999999999754211111100 011112222111100
Q ss_pred hcCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHH
Q 003355 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (827)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l 205 (827)
.+++-..-...+... ...+.|+||||..+ +...+..|++..+.+ ++|+++...+..+. .
T Consensus 58 -----~giti~~~~~~~~~~-~~~~nliDTpG~~~-------------f~~~~~~~l~~ad~~-ilVvD~~~g~~~qt-~ 116 (665)
T 2dy1_A 58 -----HRTTVRTGVAPLLFR-GHRVFLLDAPGYGD-------------FVGEIRGALEAADAA-LVAVSAEAGVQVGT-E 116 (665)
T ss_dssp -----TTSCCSCEEEEEEET-TEEEEEEECCCSGG-------------GHHHHHHHHHHCSEE-EEEEETTTCSCHHH-H
T ss_pred -----cCCeEEecceEEeeC-CEEEEEEeCCCccc-------------hHHHHHHHHhhcCcE-EEEEcCCcccchhH-H
Confidence 111211122223222 34689999999642 224456777777744 44555665554433 3
Q ss_pred HHHHHhCCCCCceEEeeecCCCC
Q 003355 206 QIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 206 ~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
.+.+.+...+.+.|+|+||+|+.
T Consensus 117 ~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 117 RAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHccCCEEEEecCCchh
Confidence 44444444578999999999998
No 198
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.08 E-value=4.6e-05 Score=85.93 Aligned_cols=81 Identities=22% Similarity=0.222 Sum_probs=53.1
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.++.||||||..... ......++.+ ...+ .++ .+++|++|.. .+++...++.+.+....+.+|+||+|.
T Consensus 183 ~DvVIIDTaGrl~~d-----~~lm~el~~i-~~~~-~pd-~vlLVvDA~~---gq~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKED-----KALIEEMKQI-SNVI-HPH-EVILVIDGTI---GQQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH-HHHH-CCS-EEEEEEEGGG---GGGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred CCEEEEECCCcccch-----HHHHHHHHHH-HHhh-cCc-eEEEEEeCCC---chhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 479999999976432 2233333333 2233 454 6777777765 355677788887766778899999999
Q ss_pred CCCcccHHHhhc
Q 003355 228 MDRGTDARNLLL 239 (827)
Q Consensus 228 ~~~~~~~~~~l~ 239 (827)
...+..+..+..
T Consensus 252 ~~~gG~~ls~~~ 263 (443)
T 3dm5_A 252 SAKGGGALSAVA 263 (443)
T ss_dssp CSSHHHHHHHHH
T ss_pred cccccHHHHHHH
Confidence 987655554443
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.06 E-value=4.8e-05 Score=79.30 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=24.2
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHh-----CCCCC
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALV-----GRDFL 73 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~-----G~~~l 73 (827)
...+.++++|..|+||||+++.|. |.+++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~ 45 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 45 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 355778999999999999999998 66543
No 200
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.06 E-value=9e-06 Score=94.68 Aligned_cols=68 Identities=13% Similarity=0.178 Sum_probs=46.0
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+=. .-+..-++-.+. .|+|++|..+...+. ..+.+.+...+.+.|+++||+|.
T Consensus 100 ~~iNlIDTPGHvDF~-------------~Ev~raL~~~Dg-AvlVvda~~GV~~qT-~~v~~~a~~~~lp~i~fINK~Dr 164 (548)
T 3vqt_A 100 RVVNLLDTPGHQDFS-------------EDTYRVLTAVDS-ALVVIDAAKGVEAQT-RKLMDVCRMRATPVMTFVNKMDR 164 (548)
T ss_dssp EEEEEECCCCGGGCS-------------HHHHHHHHSCSE-EEEEEETTTBSCHHH-HHHHHHHHHTTCCEEEEEECTTS
T ss_pred EEEEEEeCCCcHHHH-------------HHHHHHHHhcCc-eEEEeecCCCccccc-HHHHHHHHHhCCceEEEEecccc
Confidence 469999999975432 112344555564 455566666665554 45666666678999999999999
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
...
T Consensus 165 ~~a 167 (548)
T 3vqt_A 165 EAL 167 (548)
T ss_dssp CCC
T ss_pred hhc
Confidence 753
No 201
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.06 E-value=4.7e-06 Score=97.31 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=24.8
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
-..+.|+|||.+|+|||||||+|+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 3567899999999999999999999863
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.02 E-value=5e-06 Score=91.13 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..+.|+++|.+|+|||||+|+|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999864
No 203
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.99 E-value=3.8e-06 Score=93.44 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=22.6
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccce
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p 84 (827)
-.+|++||.+|+|||||+|+|+|..+.....-.||..|
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p 59 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDP 59 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCc
Confidence 35799999999999999999999875222223455555
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.93 E-value=0.00015 Score=79.14 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.-..|+++|.+|||||||+|+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999975
No 205
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.91 E-value=2.7e-05 Score=83.06 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=24.5
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCCCCcc
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~~lP~ 75 (827)
.-.+|+|||.+|+|||||+|+|+|.....+
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~ 148 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKT 148 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC--
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeec
Confidence 345899999999999999999999875333
No 206
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.89 E-value=2.9e-05 Score=87.03 Aligned_cols=120 Identities=22% Similarity=0.225 Sum_probs=68.3
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
.+.|+|+|..|||||||||+|+|..- |....+..... .+ +
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~-~~-----t--------------------------------- 108 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVV-EV-----T--------------------------------- 108 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC-------------------------------------------
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCe-ec-----c---------------------------------
Confidence 44799999999999999999999742 22211111100 00 0
Q ss_pred cCCCCcccccceEEEEecCCcccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHH
Q 003355 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~ 206 (827)
...+ -...+..++++++|+||+.... ..+.+.+..+ -+...+ .++. ++... ...++ +.
T Consensus 109 --------~~~~--v~q~~~~~~ltv~D~~g~~~~~-----~~~~~~L~~~---~L~~~~-~~~~-lS~G~-~~kqr-v~ 166 (413)
T 1tq4_A 109 --------MERH--PYKHPNIPNVVFWDLPGIGSTN-----FPPDTYLEKM---KFYEYD-FFII-ISATR-FKKND-ID 166 (413)
T ss_dssp --------CCCE--EEECSSCTTEEEEECCCGGGSS-----CCHHHHHHHT---TGGGCS-EEEE-EESSC-CCHHH-HH
T ss_pred --------eeEE--eccccccCCeeehHhhcccchH-----HHHHHHHHHc---CCCccC-CeEE-eCCCC-ccHHH-HH
Confidence 0000 1112334589999999986421 1122222222 122223 3333 44433 33444 57
Q ss_pred HHHHhCCCCCceEEeeecCCCC
Q 003355 207 IAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 207 la~~~dp~g~rtIgVlTK~D~~ 228 (827)
+++.+...+.++++|+||+|++
T Consensus 167 la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 167 IAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHhcCCCeEEEEecCccc
Confidence 8888777789999999999985
No 207
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.87 E-value=1.3e-05 Score=88.73 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=27.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceE
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPL 85 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~ 85 (827)
.+|++||.+|+|||||+|+|++..........||..|.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn 39 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKN 39 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccc
Confidence 46999999999999999999987531222334566653
No 208
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.85 E-value=3.4e-05 Score=83.65 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=41.3
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch--HH---HHHHHHhCCCCCceEEee
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DA---LQIAGIADPDGYRTIGII 222 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--d~---l~la~~~dp~g~rtIgVl 222 (827)
..+.||||||--+-... .+ +...|.+..+++| +|.+....+.+. .. +..++...+ +.+.++|.
T Consensus 46 v~LqIWDTAGQErf~~~--------~l--~~~~yyr~a~~~I-lV~Ditd~~~~~~~~l~~~l~~~~~~~~-~ipillvg 113 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEP--------SY--DSERLFKSVGALV-YVIDSQDEYINAITNLAMIIEYAYKVNP-SINIEVLI 113 (331)
T ss_dssp SCEEEEECCSCSSSCCC--------SH--HHHHHHTTCSEEE-EECCCSSCTTHHHHHHHHHHHHHHHHCT-TCEEEEEC
T ss_pred EEEEEEECCCchhccch--------hh--hhhhhccCCCEEE-EEEECCchHHHHHHHHHHHHHHHhhcCC-CCcEEEEE
Confidence 47999999995432100 01 2457888887544 455555432211 11 111223344 58899999
Q ss_pred ecCCCCCC
Q 003355 223 TKLDIMDR 230 (827)
Q Consensus 223 TK~D~~~~ 230 (827)
||.|+.+.
T Consensus 114 NK~DL~~~ 121 (331)
T 3r7w_B 114 HKVDGLSE 121 (331)
T ss_dssp CCCCSSCS
T ss_pred ECcccCch
Confidence 99999864
No 209
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.83 E-value=1e-05 Score=96.07 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=46.1
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
..++||||||..+= ..-+..-++-.+ ..++|++|..+...+. ..+.+.+...+.+.|+++||+|.
T Consensus 67 ~~iNlIDTPGH~DF-------------~~Ev~raL~~~D-gavlVVDa~~GV~~qT-~~v~~~a~~~~lp~i~~INKmDr 131 (638)
T 3j25_A 67 TKVNIIDTPGHMDF-------------LAEVYRSLSVLD-GAILLISAKDGVQAQT-RILFHALRKMGIPTIFFINKIDQ 131 (638)
T ss_dssp CBCCCEECCCSSST-------------HHHHHHHHTTCS-EEECCEESSCTTCSHH-HHHHHHHHHHTCSCEECCEECCS
T ss_pred EEEEEEECCCcHHH-------------HHHHHHHHHHhC-EEEEEEeCCCCCcHHH-HHHHHHHHHcCCCeEEEEecccc
Confidence 46899999997532 122334556565 5556667777766555 45566666667899999999998
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
...
T Consensus 132 ~~a 134 (638)
T 3j25_A 132 NGI 134 (638)
T ss_dssp SSC
T ss_pred ccC
Confidence 753
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.82 E-value=2.6e-05 Score=93.72 Aligned_cols=135 Identities=13% Similarity=0.159 Sum_probs=71.8
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCccCCCccccceEEEEeeccCCCcccceeecCCCccccChHHHHHHHHHhhhhh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~Tr~p~~l~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (827)
+-.|+|||...+|||||.++|+-.. |... .. +.. ..|..+.|+.+..++
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~------g~i~-~~--------------g~v--~~~~~~~D~~~~E~e-------- 61 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYT------GVNH-KL--------------GEV--HDGAATTDWMVQEQE-------- 61 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHH------HHHH-HC------------------------------------------
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhc------CCCC-cC--------------cee--cCCCccCCChHHHHH--------
Confidence 4579999999999999999997321 1100 00 000 011223333222111
Q ss_pred cCCCCcccccceEEEEecCC----cccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccch
Q 003355 127 AGGNKGVSDKQIRLKIFSPH----VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (827)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~----~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (827)
.+-.+....+.+...+.. ...++||||||..+=. .-+...++-.+ ..|+|++|..+...+
T Consensus 62 --RGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~-------------~Ev~~aLr~~D-gavlvVDaveGV~~q 125 (709)
T 4fn5_A 62 --RGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFT-------------IEVERSLRVLD-GAVVVFCGTSGVEPQ 125 (709)
T ss_dssp --------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCH-------------HHHHHHHHHCS-EEEEEEETTTCSCHH
T ss_pred --cCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccH-------------HHHHHHHHHhC-eEEEEEECCCCCchh
Confidence 112233444555543322 2468999999975321 11223445455 445556676666655
Q ss_pred HHHHHHHHhCCCCCceEEeeecCCCCC
Q 003355 203 DALQIAGIADPDGYRTIGIITKLDIMD 229 (827)
Q Consensus 203 d~l~la~~~dp~g~rtIgVlTK~D~~~ 229 (827)
. ..+.+++...+.+.|+|+||+|...
T Consensus 126 T-~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 126 S-ETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp H-HHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred H-HHHHHHHHHcCCCeEEEEccccccC
Confidence 4 4566666666899999999999964
No 211
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.80 E-value=3.3e-05 Score=78.29 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=23.0
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|.|+|+|..|+|||||+++|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999975
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.67 E-value=3.9e-05 Score=85.40 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=29.1
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCCCCcc-CCCccccce
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR-GNDICTRRP 84 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~~lP~-~~g~~Tr~p 84 (827)
-..|++||.+|||||||+|+|+|..+... ..-.||+.|
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p 58 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP 58 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc
Confidence 35899999999999999999999875222 333456665
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.66 E-value=7.2e-05 Score=84.49 Aligned_cols=78 Identities=23% Similarity=0.153 Sum_probs=46.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHH-HHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCC-CceEEeeecC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIM-SYIKQPSCLILAVTPANSDLANSDALQIAGIADPDG-YRTIGIITKL 225 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~-~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g-~rtIgVlTK~ 225 (827)
.++.||||||..... . ..+..+.. ..+..++ .+++|+++.... ++...++.+.+.. .-+.+|+||+
T Consensus 181 ~D~vIIDT~G~~~~~-----~---~l~~~l~~i~~~~~~d-~vllVvda~~g~---~~~~~~~~~~~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEE-----K---GLLEEMKQIKEITNPD-EIILVIDGTIGQ---QAGIQAKAFKEAVGEIGSIIVTKL 248 (432)
T ss_dssp CSEEEEECCCSCSSH-----H---HHHHHHHHTTSSSCCS-EEEEEEEGGGGG---GHHHHHHHHHTTSCSCEEEEEECS
T ss_pred CCEEEEcCCCCcccc-----H---HHHHHHHHHHHHhcCc-ceeEEeeccccH---HHHHHHHHHhhcccCCeEEEEeCC
Confidence 479999999986421 1 12222211 1122455 667777776543 5566677776543 3389999999
Q ss_pred CCCCCcccHHHh
Q 003355 226 DIMDRGTDARNL 237 (827)
Q Consensus 226 D~~~~~~~~~~~ 237 (827)
|....+..+..+
T Consensus 249 D~~~~~g~~l~~ 260 (432)
T 2v3c_C 249 DGSAKGGGALSA 260 (432)
T ss_dssp SSCSTTHHHHHH
T ss_pred CCccchHHHHHH
Confidence 997655444333
No 214
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.58 E-value=5.8e-05 Score=85.03 Aligned_cols=82 Identities=22% Similarity=0.272 Sum_probs=49.0
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.++.||||||....+. . ...-..+..+. ..+ .++ .+++|+++... +++...++.+.+....+.+|+||+|.
T Consensus 180 ~DvvIIDTaGr~~~~~--d-~~lm~el~~i~-~~~-~pd-~vlLVlDa~~g---q~a~~~a~~f~~~~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGE--E-TKLLEEMKEMY-DVL-KPD-DVILVIDASIG---QKAYDLASRFHQASPIGSVIITKMDG 250 (433)
T ss_dssp CSEEEEEECCCSSSCC--T-THHHHHHHHHH-HHH-CCS-EEEEEEEGGGG---GGGHHHHHHHHHHCSSEEEEEECGGG
T ss_pred CCEEEEECCCCccccC--C-HHHHHHHHHHH-Hhh-CCc-ceEEEEeCccc---hHHHHHHHHHhcccCCcEEEEecccc
Confidence 5799999999754101 1 12223333332 233 344 56666776653 44566677776555678899999999
Q ss_pred CCCcccHHHhh
Q 003355 228 MDRGTDARNLL 238 (827)
Q Consensus 228 ~~~~~~~~~~l 238 (827)
...+..+..+.
T Consensus 251 ~a~~G~als~~ 261 (433)
T 3kl4_A 251 TAKGGGALSAV 261 (433)
T ss_dssp CSCHHHHHHHH
T ss_pred cccchHHHHHH
Confidence 87665444443
No 215
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.55 E-value=0.00049 Score=73.76 Aligned_cols=97 Identities=21% Similarity=0.135 Sum_probs=52.3
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKL 225 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~ 225 (827)
+++.|+||||..... ...+.++. ..+. .++ -+++|+++..+. .++.++++.+.. -...-+|+||.
T Consensus 183 ~dlvIiDT~G~~~~~--------~~~~~el~-~~l~~~~~~-~~~lVl~at~~~--~~~~~~~~~~~~-l~~~giVltk~ 249 (296)
T 2px0_A 183 YDHVFVDTAGRNFKD--------PQYIDELK-ETIPFESSI-QSFLVLSATAKY--EDMKHIVKRFSS-VPVNQYIFTKI 249 (296)
T ss_dssp SSEEEEECCCCCTTS--------HHHHHHHH-HHSCCCTTE-EEEEEEETTBCH--HHHHHHTTTTSS-SCCCEEEEECT
T ss_pred CCEEEEeCCCCChhh--------HHHHHHHH-HHHhhcCCC-eEEEEEECCCCH--HHHHHHHHHHhc-CCCCEEEEeCC
Confidence 589999999987432 11233332 2333 233 456666665432 344455655553 23456778999
Q ss_pred CCCCCcccHHHhhccccccccceEEEEEcCCchh
Q 003355 226 DIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 259 (827)
Q Consensus 226 D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d 259 (827)
|....+..+..++.....| .-|+++-.+-.+|
T Consensus 250 D~~~~~g~~~~~~~~~~~p--i~~i~~ge~vp~d 281 (296)
T 2px0_A 250 DETTSLGSVFNILAESKIG--VGFMTNGQNVPED 281 (296)
T ss_dssp TTCSCCHHHHHHHHTCSCC--CSEECCSSCTTTS
T ss_pred CcccchhHHHHHHHHHCcC--EEEEECCCCChHH
Confidence 9987665555555432233 3455544443333
No 216
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.51 E-value=0.00033 Score=79.78 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=52.5
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHH---HHHHhc-CCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeec
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTM---IMSYIK-QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~l---v~~yi~-~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK 224 (827)
++.||||+|..... ......+.++ ++.... .++ -+|+|+++... ++++..++.+...-.-+.+|+||
T Consensus 377 DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~-evLLvLDattG---q~al~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 377 DVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPH-EVMLTIDASTG---QNAVSQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp SEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSS-EEEEEEEGGGT---HHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCC-eeEEEecCccc---HHHHHHHHHHHhhcCCCEEEEEc
Confidence 68899999985331 1222222222 222222 344 34555665543 45666777766544568899999
Q ss_pred CCCCCCcccHHHhhccccccccceEEEEE
Q 003355 225 LDIMDRGTDARNLLLGKVIPLRLGYVGVV 253 (827)
Q Consensus 225 ~D~~~~~~~~~~~l~~~~~~l~lG~~~V~ 253 (827)
+|-...+..+..++... .+.+-|+++-
T Consensus 448 LD~takgG~~lsi~~~~--~~PI~fig~G 474 (503)
T 2yhs_A 448 LDGTAKGGVIFSVADQF--GIPIRYIGVG 474 (503)
T ss_dssp GGGCSCCTHHHHHHHHH--CCCEEEEECS
T ss_pred CCCcccccHHHHHHHHH--CCCEEEEecC
Confidence 99877666655555322 2333455543
No 217
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.42 E-value=0.00082 Score=75.85 Aligned_cols=78 Identities=27% Similarity=0.208 Sum_probs=43.9
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.+++||||||..... ......+..+ .++..++ -+++|+++... +++...++.+.+.-.-+-+|+||+|.
T Consensus 184 ~D~VIIDTpG~l~~~-----~~l~~~L~~~--~~~~~p~-~vllVvda~~g---~~~~~~~~~f~~~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD-----EAMMDEIKQV--HASINPV-ETLFVVDAMTG---QDAANTAKAFNEALPLTGVVLTKVDG 252 (433)
T ss_dssp CSEEEEECCCCCTTC-----HHHHHHHHHH--HHHSCCS-EEEEEEETTBC---TTHHHHHHHHHHHSCCCCEEEECTTS
T ss_pred CCEEEEECCCccccc-----HHHHHHHHHH--HHhhcCc-ceeEEeecchh---HHHHHHHHHHhccCCCeEEEEecCCC
Confidence 379999999975431 1122222222 3344565 44555666543 45566666665432335579999999
Q ss_pred CCCcccHHH
Q 003355 228 MDRGTDARN 236 (827)
Q Consensus 228 ~~~~~~~~~ 236 (827)
...+..+..
T Consensus 253 ~~~~g~~l~ 261 (433)
T 2xxa_A 253 DARGGAALS 261 (433)
T ss_dssp SSCCTHHHH
T ss_pred CccHHHHHH
Confidence 765543333
No 218
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.39 E-value=9.1e-05 Score=78.05 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=23.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~~ 72 (827)
.+|+|||.+|+|||||+|+|+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6899999999999999999999865
No 219
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.37 E-value=0.00048 Score=69.83 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.6
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
..+.|+|+|..|+|||||++.|++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999999763
No 220
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.26 E-value=0.00098 Score=71.68 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=54.9
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
++.++||+|..... ...+..+..+...+.+..+..|+ .+|+++++... .+++..++.+......+++|+||.|..
T Consensus 186 d~~llDt~G~~~~~-~~~~~eLs~~r~~iaRal~~~P~-~~lLvLDa~t~---~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 186 DLLFVDTAGRLHTK-HNLMEELKKVKRAIAKADPEEPK-EVWLVLDAVTG---QNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp SEEEECCCCCCTTC-HHHHHHHHHHHHHHHHHCTTCCS-EEEEEEETTBC---THHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred CEEEecCCCCCCch-HHHHHHHHHHHHHHHHhhcCCCC-eEEEEEcHHHH---HHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 56799999985431 11123344333333334444665 55556666543 334455555543334689999999987
Q ss_pred CCcccHHHhhccccccccceEEEEEcC
Q 003355 229 DRGTDARNLLLGKVIPLRLGYVGVVNR 255 (827)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~lG~~~V~nr 255 (827)
..+..+..+... ..+..-|+++-.+
T Consensus 261 a~gg~~l~i~~~--~~~pi~~ig~Ge~ 285 (304)
T 1rj9_A 261 AKGGVLIPIVRT--LKVPIKFVGVGEG 285 (304)
T ss_dssp CCCTTHHHHHHH--HCCCEEEEECSSS
T ss_pred ccccHHHHHHHH--HCCCeEEEeCCCC
Confidence 665554444322 2344556665444
No 221
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.26 E-value=0.0011 Score=71.19 Aligned_cols=82 Identities=22% Similarity=0.257 Sum_probs=45.7
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.++.||||||...... ...+...++.+ ...+ .++ .+++|+++.. .++++..++.+.+.-.-+.+|+||+|.
T Consensus 181 ~D~ViIDTpg~~~~~~---~~~l~~el~~i-~~~~-~~d-~vllVvda~~---g~~~~~~~~~~~~~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGE---EAALLEEMKNI-YEAI-KPD-EVTLVIDASI---GQKAYDLASKFNQASKIGTIIITKMDG 251 (297)
T ss_dssp CSEEEEECCCSCCTTC---HHHHHHHHHHH-HHHH-CCS-EEEEEEEGGG---GGGHHHHHHHHHHTCTTEEEEEECGGG
T ss_pred CCEEEEeCCCCccccc---HHHHHHHHHHH-HHHh-cCC-EEEEEeeCCc---hHHHHHHHHHHHhhCCCCEEEEeCCCC
Confidence 4799999999865100 01122222222 1222 455 4555556553 355667777766532337789999998
Q ss_pred CCCcccHHHhh
Q 003355 228 MDRGTDARNLL 238 (827)
Q Consensus 228 ~~~~~~~~~~l 238 (827)
...+..+..+.
T Consensus 252 ~~~~g~~~~~~ 262 (297)
T 1j8m_F 252 TAKGGGALSAV 262 (297)
T ss_dssp CTTHHHHHHHH
T ss_pred CcchHHHHHHH
Confidence 86654444433
No 222
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.23 E-value=0.00019 Score=77.33 Aligned_cols=98 Identities=20% Similarity=0.213 Sum_probs=53.1
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHH---HHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMI---MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv---~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK 224 (827)
+++.|+||||.... ...+...+..+. ...+....+.+++|+++. +.++++..++.+.....-+-+|+||
T Consensus 187 ~dvvIiDtpg~~~~-----~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~~~~l~~a~~~~~~~~i~gvVlTk 258 (306)
T 1vma_A 187 KDVVIIDTAGRLHT-----KKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TGQNGLVQAKIFKEAVNVTGIILTK 258 (306)
T ss_dssp CSEEEEEECCCCSC-----HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCEEEEECCCchhh-----HHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CCHHHHHHHHHHHhcCCCCEEEEeC
Confidence 57999999996322 122222333322 122332233556677765 3345555566554433456778999
Q ss_pred CCCCCCcccHHHhhccccccccceEEEEEcC
Q 003355 225 LDIMDRGTDARNLLLGKVIPLRLGYVGVVNR 255 (827)
Q Consensus 225 ~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nr 255 (827)
.|....+..+..+.... .+..-|+++-.+
T Consensus 259 ~D~~~~gG~~l~~~~~~--~~Pi~~i~~Ge~ 287 (306)
T 1vma_A 259 LDGTAKGGITLAIAREL--GIPIKFIGVGEK 287 (306)
T ss_dssp GGGCSCTTHHHHHHHHH--CCCEEEEECSSS
T ss_pred CCCccchHHHHHHHHHH--CCCEEEEeCCCC
Confidence 99987766555444322 233456665444
No 223
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.13 E-value=0.001 Score=72.25 Aligned_cols=79 Identities=23% Similarity=0.273 Sum_probs=46.5
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
++.++||+|..... ...-..+..+.+ .+. ++ -.++|+++... ++++..++.+.....-+++|+||.|..
T Consensus 213 d~vliDtaG~~~~~-----~~l~~eL~~i~r-al~-~d-e~llvLDa~t~---~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 213 DVVLIDTAGRSETN-----RNLMDEMKKIAR-VTK-PN-LVIFVGDALAG---NAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp SEEEEEECCSCCTT-----TCHHHHHHHHHH-HHC-CS-EEEEEEEGGGT---THHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred hhhHHhhccchhHH-----HHHHHHHHHHHH-Hhc-CC-CCEEEEecHHH---HHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 57899999985432 112223333322 222 44 34455554433 566777777765556789999999987
Q ss_pred CCcccHHHhh
Q 003355 229 DRGTDARNLL 238 (827)
Q Consensus 229 ~~~~~~~~~l 238 (827)
..+..+..++
T Consensus 282 a~~G~~l~~~ 291 (328)
T 3e70_C 282 ARGGAALSIS 291 (328)
T ss_dssp SCCHHHHHHH
T ss_pred cchhHHHHHH
Confidence 6655444443
No 224
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.09 E-value=0.00042 Score=78.30 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..--|+|+|.+++|||+|||.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3446889999999999999999974
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.89 E-value=0.013 Score=63.38 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=53.4
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHH---HHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeec
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIR---TMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~---~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK 224 (827)
.+++||||||..... ......+. .++...+....+-+++|+++... ++++..++.+.+...-+=+|+||
T Consensus 192 yD~VIIDTpg~l~~~-----~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~---~~~l~~~~~~~~~~~i~GvVltk 263 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNK-----TNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG---QNGVIQAEEFSKVADVSGIILTK 263 (320)
T ss_dssp CSEEEEECCCCGGGH-----HHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT---HHHHHHHHHHTTTSCCCEEEEEC
T ss_pred CCEEEEcCCCccccc-----HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc---HHHHHHHHHHhhcCCCcEEEEeC
Confidence 479999999976431 11111222 22222223222355666666632 55666777777654445578899
Q ss_pred CCCCCCcccHHHhhccccccccceEEEEEcCC
Q 003355 225 LDIMDRGTDARNLLLGKVIPLRLGYVGVVNRS 256 (827)
Q Consensus 225 ~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs 256 (827)
.|....+..+..++.... +..-|+++-.+-
T Consensus 264 ~d~~~~~g~~~~~~~~~~--~Pi~~i~~Ge~~ 293 (320)
T 1zu4_A 264 MDSTSKGGIGLAIKELLN--IPIKMIGVGEKV 293 (320)
T ss_dssp GGGCSCTTHHHHHHHHHC--CCEEEEECSSST
T ss_pred CCCCCchhHHHHHHHHHC--cCEEEEeCCCCc
Confidence 998766555444443222 233456554443
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.72 E-value=0.0033 Score=70.64 Aligned_cols=80 Identities=26% Similarity=0.262 Sum_probs=46.0
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.++.||||||..... ..+-..+..+ ...+ .++ -+++|+++.. .++++..++.+.+.-.-+-+|+||+|.
T Consensus 181 ~DvVIIDTaG~l~~d-----~~l~~el~~i-~~~~-~pd-~vlLVvDa~t---gq~av~~a~~f~~~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 181 RDLILVDTAGRLQID-----EPLMGELARL-KEVL-GPD-EVLLVLDAMT---GQEALSVARAFDEKVGVTGLVLTKLDG 249 (425)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH-HHHH-CCS-EEEEEEEGGG---TTHHHHHHHHHHHHTCCCEEEEESGGG
T ss_pred CCEEEEcCCCccccc-----HHHHHHHHHh-hhcc-CCc-eEEEEEeccc---hHHHHHHHHHHHhcCCceEEEEeCcCC
Confidence 479999999975431 1122222222 2222 455 3455666653 366677777766543457779999998
Q ss_pred CCCcccHHHhh
Q 003355 228 MDRGTDARNLL 238 (827)
Q Consensus 228 ~~~~~~~~~~l 238 (827)
...+..+..+.
T Consensus 250 ~~~~g~alsi~ 260 (425)
T 2ffh_A 250 DARGGAALSAR 260 (425)
T ss_dssp CSSCHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 76554444443
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.38 E-value=0.017 Score=63.36 Aligned_cols=85 Identities=22% Similarity=0.149 Sum_probs=46.1
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
+..++||.|+.... ...+.++..+...+.+..+.+|+-++|++ ++...+ |+...++.+......+++|+||.|..
T Consensus 242 d~~lldt~Gl~~~~-~~~~~eLSkqr~~iaral~~~P~e~lLvL-Dpttgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTN-YSLMEELIACKKAVGKIVSGAPNEILLVL-DGNTGL---NMLPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCC-HHHHHHHHHHHHHHHHHSTTCCSEEEEEE-EGGGGG---GGHHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhh-hhHHHHHHHHHHHHHHHHhcCCCceEEEE-cCCCCC---CHHHHHHHHHHhcCCeEEEEecCccc
Confidence 45789999986432 11123344333333344445666444444 444333 33334444433335689999999988
Q ss_pred CCcccHHHhh
Q 003355 229 DRGTDARNLL 238 (827)
Q Consensus 229 ~~~~~~~~~l 238 (827)
.++-.+..+.
T Consensus 317 ~~gG~~lsi~ 326 (359)
T 2og2_A 317 ARGGCVVSVV 326 (359)
T ss_dssp SCTHHHHHHH
T ss_pred ccccHHHHHH
Confidence 7765554443
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.17 E-value=0.021 Score=61.16 Aligned_cols=85 Identities=22% Similarity=0.149 Sum_probs=44.5
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~ 228 (827)
+..++|+.|+.... ...+.++..+...+.+..+.+|+-++|++ ++...+ |+...++.+......+++++||.|..
T Consensus 185 d~~lldt~gl~~~~-~~~~~eLSkqr~~iaral~~~P~e~lLvL-Dptsgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTN-YSLMEELIACKKAVGKIVSGAPNEILLVL-DGNTGL---NMLPQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCC-HHHHHHHHHHHHHHHTTSTTCCSEEEEEE-EGGGGG---GGHHHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcch-hHHHHHHHHHHHHHHHhhccCCCeeEEEE-eCCCCc---CHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 35789999986431 11122333222222333344565444444 454333 33333444433335689999999988
Q ss_pred CCcccHHHhh
Q 003355 229 DRGTDARNLL 238 (827)
Q Consensus 229 ~~~~~~~~~l 238 (827)
..+..+..+.
T Consensus 260 ~~~g~~l~~~ 269 (302)
T 3b9q_A 260 ARGGCVVSVV 269 (302)
T ss_dssp SCTHHHHHHH
T ss_pred CccChheehH
Confidence 7665554443
No 229
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.06 E-value=0.02 Score=61.01 Aligned_cols=94 Identities=24% Similarity=0.217 Sum_probs=49.3
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.++.||||||..... ......+..+.. .+ .++.+ ++|+++.. .++++..++.+.+.-.-+-+|+||.|.
T Consensus 181 ~D~viiDtpp~~~~d-----~~~~~~l~~~~~-~~-~~~~~-~lv~~~~~---~~~~~~~~~~~~~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 181 RDLILVDTAGRLQID-----EPLMGELARLKE-VL-GPDEV-LLVLDAMT---GQEALSVARAFDEKVGVTGLVLTKLDG 249 (295)
T ss_dssp CCEEEEECCCCSSCC-----HHHHHHHHHHHH-HH-CCSEE-EEEEEGGG---THHHHHHHHHHHHHTCCCEEEEECGGG
T ss_pred CCEEEEeCCCCcccc-----HHHHHHHHHHhh-hc-CCCEE-EEEEeCCC---cHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 479999999975431 112223323222 22 35544 45566553 255566666655432335578999998
Q ss_pred CCCcccHHHhhccccccccceEEEEEc
Q 003355 228 MDRGTDARNLLLGKVIPLRLGYVGVVN 254 (827)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~n 254 (827)
...+..+.+++.... +..-|+++-.
T Consensus 250 ~~~~g~~~~~~~~~~--~pi~~i~~g~ 274 (295)
T 1ls1_A 250 DARGGAALSARHVTG--KPIYFAGVSE 274 (295)
T ss_dssp CSSCHHHHHHHHHHC--CCEEEEC---
T ss_pred CccHHHHHHHHHHHC--cCEEEEeCCC
Confidence 876655555543322 3334555443
No 230
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.56 E-value=0.056 Score=60.81 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=18.6
Q ss_pred CCEEEEEccCCCCHHHHHHHHh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~ 68 (827)
+--|+|+|.+++|||+|+|.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 3456789999999999999776
No 231
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.21 E-value=0.34 Score=51.13 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
.....+..++.+.+ +|+.|++|........ ..+.+.+ .+++.|+|+||+|+.+.
T Consensus 12 ka~~~~~~~l~~aD-vVl~VvDAr~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 12 KARREVTEKLKLID-IVYELVDARIPMSSRN-PMIEDIL--KNKPRIMLLNKADKADA 65 (282)
T ss_dssp HHHHHHHHHGGGCS-EEEEEEETTSTTTTSC-HHHHHHC--SSSCEEEEEECGGGSCH
T ss_pred HHHHHHHHHHhhCC-EEEEEEeCCCCCccCC-HHHHHHH--CCCCEEEEEECcccCCH
Confidence 34566678888886 7788888887665542 2334444 46899999999999973
No 232
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.81 E-value=0.042 Score=55.09 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=21.5
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-..|+|+|..+||||||+++|++.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999975
No 233
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.46 E-value=0.05 Score=54.18 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|..|||||||++.|+|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999985
No 234
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.36 E-value=0.053 Score=52.98 Aligned_cols=23 Identities=13% Similarity=0.484 Sum_probs=21.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|+|+|..|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999985
No 235
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.35 E-value=0.052 Score=54.25 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++|+|..|||||||++.|.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999996
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.20 E-value=0.089 Score=57.60 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..|||||||||+|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999974
No 237
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.14 E-value=0.054 Score=53.78 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=25.3
Q ss_pred EEEEccCCCCHHHHHHHHhCCC--CCccCCCccccce
Q 003355 50 VAVVGSQSSGKSSVLEALVGRD--FLPRGNDICTRRP 84 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~~--~lP~~~g~~Tr~p 84 (827)
|||+|+.||||+||++.|+... -+......+||-|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998542 1233444455544
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.06 E-value=0.065 Score=52.60 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+++|..|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 239
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.95 E-value=0.084 Score=57.86 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.|+|+|..|||||||+++|+|. +|...|
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~--~~~~~g 204 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE--IPFDQR 204 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT--SCTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc--CCCCce
Confidence 4999999999999999999996 344444
No 240
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.89 E-value=0.074 Score=54.63 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|.|.-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999973
No 241
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.72 E-value=0.079 Score=53.99 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999973
No 242
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.69 E-value=0.091 Score=51.28 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|..|||||||++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999997
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.62 E-value=0.071 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+++|..|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999986
No 244
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.58 E-value=0.071 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
-++|+|..|||||||++.|+|..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999973
No 245
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.57 E-value=0.1 Score=55.68 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
-.++++|..|||||||||+|.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 368999999999999999999975
No 246
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.49 E-value=0.1 Score=54.72 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|..|||||||++.|.|.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999997
No 247
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.49 E-value=0.091 Score=52.59 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+|+|..|||||||++.|.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999986
No 248
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.45 E-value=0.04 Score=59.13 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
-.++|+|..|||||||||+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 479999999999999999999974
No 249
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.45 E-value=0.081 Score=57.28 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=23.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
.|+|+|..|||||||+++|+|. +|...|
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~--~~~~~g 200 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF--IPKEER 200 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG--SCTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCCc
Confidence 3999999999999999999996 344444
No 250
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.42 E-value=0.076 Score=52.06 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=20.0
Q ss_pred EEEEccCCCCHHHHHHHHhCC
Q 003355 50 VAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~ 70 (827)
|+|+|..|||||||++.|+|.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999986
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.36 E-value=0.078 Score=53.63 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++|+|..|||||||++.|+|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999995
No 252
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.33 E-value=0.11 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|.|.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999973
No 253
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.33 E-value=0.091 Score=60.36 Aligned_cols=30 Identities=30% Similarity=0.539 Sum_probs=24.9
Q ss_pred EEEEccCCCCHHHHHHHHhCCCCCccCCCccc
Q 003355 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~T 81 (827)
|+|+|.+||||||+|++|+|. +|...+++|
T Consensus 263 i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 999999999999999999985 465555443
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.32 E-value=0.072 Score=53.27 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|..+||||||++.|.|.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999986
No 255
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.29 E-value=0.095 Score=53.12 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|..|||||||++.|+|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999997
No 256
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.18 E-value=0.1 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
-.++++|..|||||||++.|.|.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999973
No 257
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.14 E-value=0.1 Score=53.61 Aligned_cols=23 Identities=52% Similarity=0.625 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|+|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 258
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.96 E-value=0.11 Score=53.23 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|..+||||||++.|+|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 259
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.93 E-value=0.11 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|.|.-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999973
No 260
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.92 E-value=0.11 Score=54.43 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..|||||||++.|.|.-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999973
No 261
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.89 E-value=0.11 Score=54.88 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|..|||||||++.|.|.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999997
No 262
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.81 E-value=0.11 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|.|+|+|..|||||||++.|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3688999999999999999999975
No 263
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.80 E-value=0.11 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|+|.-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999973
No 264
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.72 E-value=0.11 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999973
No 265
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.66 E-value=0.12 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|.|.-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999983
No 266
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.59 E-value=0.12 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|..|||||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999997
No 267
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.55 E-value=0.12 Score=54.10 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|.|.-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57899999999999999999973
No 268
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.52 E-value=0.12 Score=53.83 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|+|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999973
No 269
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.51 E-value=0.11 Score=50.02 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|+.+||||||++.|+|.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999997
No 270
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.40 E-value=0.11 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|..|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 271
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.39 E-value=0.13 Score=53.77 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..|||||||++.|+|.-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999999973
No 272
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.38 E-value=0.13 Score=53.83 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|..|||||||++.|+|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999997
No 273
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.29 E-value=0.13 Score=54.04 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++|+|..||||||||+.|+|.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999997
No 274
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.20 E-value=0.13 Score=53.42 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=24.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCccc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~T 81 (827)
.++++|..|||||||++.|.|.- +...|.++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~ 63 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH--RPIQGKIE 63 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS--CCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEEE
Confidence 47899999999999999999973 44445443
No 275
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.17 E-value=0.13 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999973
No 276
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.14 E-value=0.12 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|..|||||||+++|+|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999996
No 277
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.06 E-value=0.14 Score=54.10 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|+|.-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999973
No 278
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.04 E-value=0.14 Score=49.50 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=18.5
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
-++++|..|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 478999999999999998654
No 279
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.01 E-value=0.098 Score=52.03 Aligned_cols=25 Identities=20% Similarity=0.587 Sum_probs=21.4
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.-.-|+|+|.+|||||||.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3446899999999999999999864
No 280
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.83 E-value=0.13 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.-.+|+|..+||||||++||.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999999875
No 281
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.70 E-value=0.082 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=21.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+.|+|+|..+||||||++.|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999986
No 282
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.68 E-value=0.11 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=20.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|..+||||||++.|+|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999997
No 283
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.37 E-value=0.15 Score=50.15 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|..||||||+++.|.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999987
No 284
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.31 E-value=0.15 Score=54.49 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|..|||||||++.|+|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999999985
No 285
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.23 E-value=0.18 Score=52.81 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCcc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~ 75 (827)
.++++|..+||||||++.|.|.. |.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~--p~ 56 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL--PY 56 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CC
Confidence 57899999999999999999983 64
No 286
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.17 E-value=0.16 Score=48.64 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+++|..+||||||++.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999875
No 287
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.09 E-value=0.26 Score=52.56 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.2
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-.++++|..|||||||||+|+ .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 368999999999999999999 5
No 288
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.96 E-value=0.19 Score=53.42 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|+|.-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999999973
No 289
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.94 E-value=0.14 Score=54.91 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++|||..|||||||++.|+|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999999996
No 290
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.80 E-value=0.24 Score=49.52 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=23.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g 78 (827)
-++|+|..+||||||+..|+|.-..|.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 478999999999999999998533344433
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.75 E-value=0.18 Score=49.27 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.3
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
-|+|+|..+||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999986
No 292
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.43 E-value=0.19 Score=49.78 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|+|+|..|||||||++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
No 293
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.38 E-value=0.15 Score=51.64 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=15.2
Q ss_pred EEEEEccCCCCHHHHHHHHh-CC
Q 003355 49 QVAVVGSQSSGKSSVLEALV-GR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~-G~ 70 (827)
.|+|+|..+||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999 86
No 294
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.38 E-value=0.42 Score=50.64 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
...|+|+|.++||||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999875
No 295
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.37 E-value=0.18 Score=55.17 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|..||||||+|++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5999999999999999999986
No 296
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.22 E-value=0.19 Score=53.96 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCCC-EEEEEccCCCCHHHHHHHHhCC
Q 003355 45 IELP-QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 45 ~~lP-~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+.-+ .|+|+|..|||||||++.|.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 3445 4789999999999999999996
No 297
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.17 E-value=0.27 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=22.1
Q ss_pred CEEEEEccCCCCHHHHHHHHh---CCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALV---GRD 71 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~---G~~ 71 (827)
..|+|+|..||||||+++.|. |..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 479999999999999999999 875
No 298
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.03 E-value=0.21 Score=49.54 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+++|..+||||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999986
No 299
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.87 E-value=0.25 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..||||||||+.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999974
No 300
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.74 E-value=0.26 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..||||||||+.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999984
No 301
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.72 E-value=0.26 Score=54.05 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..|||||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 57999999999999999999974
No 302
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=87.64 E-value=0.39 Score=47.55 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|..+||||||++.|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=87.46 E-value=0.24 Score=47.59 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+++|..+|||||+++.|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999998754
No 304
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.43 E-value=0.19 Score=56.24 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+|+|..||||||+|++|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999996
No 305
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.35 E-value=0.28 Score=53.69 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999999974
No 306
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.32 E-value=0.28 Score=53.74 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999974
No 307
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=87.23 E-value=0.32 Score=45.93 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.8
Q ss_pred CEEEEEccCCCCHHHHHHHH
Q 003355 48 PQVAVVGSQSSGKSSVLEAL 67 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL 67 (827)
+-|+|+|..||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999999
No 308
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.16 E-value=0.29 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..||||||||+.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999999974
No 309
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.16 E-value=0.29 Score=53.85 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999999974
No 310
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=87.05 E-value=0.25 Score=50.62 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|..+||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 311
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=86.93 E-value=0.37 Score=46.59 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 24 ~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.....++.++..++.+... .-.-++++|..|+|||||+.+|.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~---~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNPE---EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHHHSCCGG---GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccc---CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4556677777776655432 2345899999999999999999876
No 312
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.83 E-value=0.34 Score=45.93 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.1
Q ss_pred CEEEEEccCCCCHHHHHHHHh
Q 003355 48 PQVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~ 68 (827)
.-.+|+|+.++||||+|+||.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467999999999999999986
No 313
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.82 E-value=0.31 Score=53.60 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..||||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999999974
No 314
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.78 E-value=0.39 Score=46.74 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.9
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|.|+|+|..+||||||++.|++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999864
No 315
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.70 E-value=0.28 Score=48.54 Aligned_cols=23 Identities=35% Similarity=0.265 Sum_probs=20.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|+|+|..|||||||.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999876
No 316
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=86.67 E-value=0.38 Score=45.66 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|+|+|..||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998643
No 317
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=86.64 E-value=0.31 Score=48.86 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|+++|..||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 318
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.56 E-value=0.24 Score=54.15 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-.++|+|..|||||||++.|.|.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999997
No 319
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=86.39 E-value=0.27 Score=54.05 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|..||||||++++|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999995
No 320
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.39 E-value=0.22 Score=53.46 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=22.9
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
+|.++|+|..||||||||+.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 6789999999999999999999863
No 321
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=86.10 E-value=0.38 Score=51.15 Aligned_cols=66 Identities=12% Similarity=0.175 Sum_probs=39.6
Q ss_pred cEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCcc-cchHHHHHHHHhCCCCCceEEeeecCCC
Q 003355 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL-ANSDALQIAGIADPDGYRTIGIITKLDI 227 (827)
Q Consensus 149 ~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~-~~~d~l~la~~~dp~g~rtIgVlTK~D~ 227 (827)
.+.++|| .- ..+.+...|+++.+. +++|.++.... .......+...+...+.+.|+|+||+|+
T Consensus 64 ~~~iwD~--qe-------------r~~~l~~~~~~~ad~-vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV--LH-------------RKNLLTKPHVANVDQ-VILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE--CC-------------CSCEETTTTEESCCE-EEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred eEEEEEE--cc-------------ccceeeccccccCCE-EEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHc
Confidence 7899998 11 122344468998884 45555555432 2222223333333346899999999999
Q ss_pred CCC
Q 003355 228 MDR 230 (827)
Q Consensus 228 ~~~ 230 (827)
.+.
T Consensus 128 ~~~ 130 (301)
T 1u0l_A 128 YDE 130 (301)
T ss_dssp CCH
T ss_pred CCc
Confidence 864
No 322
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.08 E-value=0.29 Score=52.16 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|..|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=85.94 E-value=0.41 Score=47.39 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=22.5
Q ss_pred CCCCC-EEEEEccCCCCHHHHHHHHhCC
Q 003355 44 TIELP-QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 44 ~~~lP-~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.+.-+ .|+|+|..+||||||.+.|.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34444 5789999999999999999986
No 324
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=85.91 E-value=0.34 Score=47.74 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.|+|+|..+|||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 325
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=85.89 E-value=0.37 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..+|||||||+.|.|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999963
No 326
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=85.84 E-value=0.27 Score=53.86 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=39.8
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc---------ccchHHHHHHHHhCC----C
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---------LANSDALQIAGIADP----D 214 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---------~~~~d~l~la~~~dp----~ 214 (827)
..+.|+||+|- +..+.+...|.+..+++|+++.-.+.| -.-.++..+...+-. .
T Consensus 201 ~~l~i~Dt~Gq-------------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 201 VPFKMVDVGGQ-------------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp EEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eEEEEEeccch-------------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 57899999993 234556667888887666655444322 112233344333321 3
Q ss_pred CCceEEeeecCCCCC
Q 003355 215 GYRTIGIITKLDIMD 229 (827)
Q Consensus 215 g~rtIgVlTK~D~~~ 229 (827)
+.++|+|+||.|+..
T Consensus 268 ~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 268 NVSIILFLNKTDLLE 282 (362)
T ss_dssp TSEEEEEEECHHHHH
T ss_pred CCCEEEEEEChhhhh
Confidence 578999999999863
No 327
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=85.83 E-value=0.26 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..||||||||+.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999984
No 328
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=85.75 E-value=0.41 Score=47.32 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+++|..+|||||+.+.|.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999999873
No 329
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.68 E-value=0.48 Score=49.65 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=25.7
Q ss_pred HHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 34 DIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 34 d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
++++.+|.. +. .-|+++|.+|+|||||+++|.|.
T Consensus 34 ~~l~~~~l~--~~-~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 34 DQFKALGLV--TP-AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHHTTCC--CC-SEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHcCCC--CC-CeEEEECCCCCcHHHHHHHHHHH
Confidence 345556642 11 23999999999999999999986
No 330
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.25 E-value=0.62 Score=47.65 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+++|.+|+|||||+++|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999985
No 331
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=84.94 E-value=0.53 Score=48.53 Aligned_cols=24 Identities=29% Similarity=0.518 Sum_probs=22.0
Q ss_pred CEEEEEccCCCCHHHHHHHHh---CCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALV---GRD 71 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~---G~~ 71 (827)
..|+++|..|||||||++.|. |..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 479999999999999999999 864
No 332
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=84.92 E-value=0.34 Score=54.82 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.=+.++|+|..+||||||++.|+|.-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34689999999999999999999973
No 333
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=84.88 E-value=0.51 Score=46.11 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|..||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5999999999999999999753
No 334
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=84.83 E-value=0.79 Score=49.67 Aligned_cols=70 Identities=16% Similarity=0.291 Sum_probs=45.3
Q ss_pred cccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCC---------CcccchHHHHHHHHh----CC
Q 003355 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN---------SDLANSDALQIAGIA----DP 213 (827)
Q Consensus 147 ~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~---------~d~~~~d~l~la~~~----dp 213 (827)
...+.|+||.| .+..+.+...|.+..+++|+++.-.. ..-.-.+++.+...+ ..
T Consensus 160 ~v~l~iwDtaG-------------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 160 DIPFHLIDVGG-------------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SCEEEEEECCS-------------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred eeeeccccCCC-------------cccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 35789999999 24677888899999886666654331 111112333333333 22
Q ss_pred CCCceEEeeecCCCCC
Q 003355 214 DGYRTIGIITKLDIMD 229 (827)
Q Consensus 214 ~g~rtIgVlTK~D~~~ 229 (827)
...++|+|+||.|+..
T Consensus 227 ~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 4678999999999874
No 335
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=84.75 E-value=0.39 Score=47.35 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=20.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|+|+|..|||||||.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998643
No 336
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=84.73 E-value=0.48 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~ 68 (827)
+..-.+|+|..||||||+||+|+
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34468899999999999999988
No 337
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=84.72 E-value=0.31 Score=46.20 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=22.3
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.-..++++|..++|||+|+.+|.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999986
No 338
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=84.67 E-value=0.26 Score=53.81 Aligned_cols=23 Identities=22% Similarity=0.624 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..||||||||+.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999974
No 339
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=84.52 E-value=0.47 Score=47.97 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
-++|+|..|||||||+..|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 479999999999999999984
No 340
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=84.45 E-value=0.33 Score=49.27 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+|+|..+|||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999986
No 341
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=84.08 E-value=0.53 Score=44.94 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.3
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.|+|+|.++|||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 489999999999999999975
No 342
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=84.08 E-value=0.23 Score=54.25 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=44.3
Q ss_pred cccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc---------ccchHHHHHHHHhCC----
Q 003355 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---------LANSDALQIAGIADP---- 213 (827)
Q Consensus 147 ~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---------~~~~d~l~la~~~dp---- 213 (827)
...+.|+||+|-. ..+.+...|.+..+++|+++.-.+.| -.-.++..+...+..
T Consensus 192 ~~~l~iwDt~GQe-------------~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQR-------------SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSG-------------GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCch-------------hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 3578999999932 33455667888888666665444422 112333444444322
Q ss_pred CCCceEEeeecCCCCC
Q 003355 214 DGYRTIGIITKLDIMD 229 (827)
Q Consensus 214 ~g~rtIgVlTK~D~~~ 229 (827)
.+.++|+|+||.|+..
T Consensus 259 ~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 259 TDTSIILFLNKKDLFE 274 (353)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred cCCcEEEEEECcCchh
Confidence 3588999999999863
No 343
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=84.07 E-value=3.2 Score=50.97 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=18.0
Q ss_pred EEEEEccCCCCHHHHHHHH
Q 003355 49 QVAVVGSQSSGKSSVLEAL 67 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL 67 (827)
.++|+|..++||||+|..|
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999999
No 344
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=83.44 E-value=0.59 Score=44.77 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+|+|.+||||||+..+|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999754
No 345
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=83.39 E-value=0.84 Score=47.48 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+++|.+|+|||||+++|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999986
No 346
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=83.28 E-value=0.59 Score=45.12 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.|+|+|..||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 347
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=83.23 E-value=0.47 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+|+|.+|||||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 348
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=83.12 E-value=0.61 Score=53.85 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|..|||||||++.|.|.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 349
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=83.12 E-value=2.1 Score=46.79 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
.+++++..|....+ +||.|+|+...... -.-.+.+.+. +.+.|+|+||+|+.+..
T Consensus 60 ~f~~~L~~~~~~~~-lil~VvD~~d~~~s-~~~~l~~~l~--~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 60 DFLSMLHRIGESKA-LVVNIVDIFDFNGS-FIPGLPRFAA--DNPILLVGNKADLLPRS 114 (369)
T ss_dssp HHHHHHHHHHHHCC-EEEEEEETTCSGGG-CCSSHHHHCT--TSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHhhccCc-EEEEEEECCCCCCc-hhhHHHHHhC--CCCEEEEEEChhcCCCc
Confidence 56677777766654 77888877653321 1112333332 68999999999999754
No 350
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=82.87 E-value=2.4 Score=46.28 Aligned_cols=56 Identities=9% Similarity=-0.006 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 172 ARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 172 ~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
+.+++++..|.+..+ ++|+|+|+.... .......+++.. +.+.|+|+||+|+.+..
T Consensus 57 e~f~~~l~~i~~~~~-~il~VvD~~d~~--~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 57 DDFLRILNGIGKSDA-LVVKIVDIFDFN--GSWLPGLHRFVG-NNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHHHSCC-EEEEEEETTSHH--HHCCTTHHHHSS-SSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHhccCc-EEEEEEECCCCc--ccHHHHHHHHhC-CCcEEEEEEChhcCCcc
Confidence 466777777777654 778888876422 111122233322 68899999999998653
No 351
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=82.83 E-value=0.63 Score=44.88 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=19.2
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.|+|+|..||||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 352
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=82.65 E-value=0.71 Score=45.44 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=20.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
..|+++|..+|||||+...|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 353
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=82.47 E-value=0.75 Score=44.37 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.9
Q ss_pred CCEEEEEccCCCCHHHHHHHHh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~ 68 (827)
.+.|+++|..+|||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999995
No 354
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=82.16 E-value=0.78 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.9
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-+.|+++|..+|||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999654
No 355
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.16 E-value=4.9 Score=44.81 Aligned_cols=33 Identities=27% Similarity=0.639 Sum_probs=26.4
Q ss_pred HHHHHhCCCCCCCCCE-EEEEccCCCCHHHHHHHHhCC
Q 003355 34 DIFAQLGSQSTIELPQ-VAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 34 d~~~~~g~~~~~~lP~-IvVvG~qssGKSSlLnaL~G~ 70 (827)
+++..+|+ ..|+ |.+.|++|+|||++..||.+.
T Consensus 196 ~~~~~~g~----~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 196 DLYEQIGI----DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp HHHHHHCC----CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHHhCCC----CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45666774 4454 999999999999999999864
No 356
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=82.01 E-value=0.71 Score=44.69 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
-|+|+|..+|||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 357
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=81.97 E-value=0.69 Score=49.88 Aligned_cols=69 Identities=12% Similarity=0.208 Sum_probs=45.0
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecC---------CCCcccchHHHHHHHHhCC----C
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTP---------ANSDLANSDALQIAGIADP----D 214 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~---------a~~d~~~~d~l~la~~~dp----~ 214 (827)
..+.++||.| .+..+.+...|.+..+++|+++.- .+..-.-.+++.+.+.+.. .
T Consensus 167 v~l~iwDtgG-------------Qe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 167 VIFRMVDVGG-------------QRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp EEEEEEEECC-------------SHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eeeEEEEcCC-------------chhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 5789999999 245677778899998876666621 1111122234444444432 3
Q ss_pred CCceEEeeecCCCCC
Q 003355 215 GYRTIGIITKLDIMD 229 (827)
Q Consensus 215 g~rtIgVlTK~D~~~ 229 (827)
..++|+|+||.|+..
T Consensus 234 ~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 234 NSSVILFLNKKDLLE 248 (327)
T ss_dssp TCEEEEEEECHHHHH
T ss_pred CceEEEEEECchhhh
Confidence 578999999999864
No 358
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=81.92 E-value=0.9 Score=52.40 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=24.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCcc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~ 80 (827)
.++|+|..|||||||++.|.|.. +...|.+
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~i 343 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKI 343 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCeEE
Confidence 58999999999999999999973 4344443
No 359
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=81.90 E-value=0.65 Score=53.60 Aligned_cols=22 Identities=36% Similarity=0.669 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|..|||||||++.|+|.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999997
No 360
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=81.78 E-value=0.81 Score=45.55 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=19.8
Q ss_pred CCCEEEEEccCCCCHHHHHHHHh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~ 68 (827)
+-.-.+|+|..++||||+++||.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Confidence 33467999999999999999986
No 361
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=81.73 E-value=0.94 Score=48.11 Aligned_cols=53 Identities=9% Similarity=0.120 Sum_probs=33.7
Q ss_pred HHHHHhcCCccEEEeecCCCCc-ccchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 177 MIMSYIKQPSCLILAVTPANSD-LANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 177 lv~~yi~~~~~iIL~V~~a~~d-~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
+.+.|+.+.+ .+|+|+++... ......-++...+...+.+.|+|+||+|+.++
T Consensus 72 l~r~~~~naD-~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 72 LIRPKVANVD-RVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp EETTEEESCC-EEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred HhHHHHHhcC-EEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc
Confidence 3345888887 55666666643 33332223333343457899999999999864
No 362
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=81.70 E-value=0.68 Score=53.92 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999999997
No 363
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=81.47 E-value=0.8 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..|||||||++.|+|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999973
No 364
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=81.46 E-value=0.59 Score=53.13 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-.++|+|..+|||||||++|.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 35899999999999999999996
No 365
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.38 E-value=4.6 Score=45.19 Aligned_cols=33 Identities=27% Similarity=0.549 Sum_probs=26.6
Q ss_pred HHHHHhCCCCCCCCC-EEEEEccCCCCHHHHHHHHhCC
Q 003355 34 DIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 34 d~~~~~g~~~~~~lP-~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+++..+|+ ..| -|.+.|++|+|||++..||.+.
T Consensus 205 ~~f~~~g~----~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 205 EIFQRVGI----KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp HHHHHHCC----CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHhCCC----CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667774 444 5999999999999999999864
No 366
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=81.35 E-value=0.72 Score=53.73 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999997
No 367
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=81.34 E-value=0.71 Score=54.10 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..||||||||+.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999973
No 368
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=81.30 E-value=0.78 Score=44.23 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.8
Q ss_pred EEEEEccCCCCHHHHHHHHh
Q 003355 49 QVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~ 68 (827)
.|+++|..+|||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=81.17 E-value=0.67 Score=44.66 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+++|..+|||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 370
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=81.15 E-value=0.79 Score=44.86 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|+|+|..+|||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 35999999999999999999764
No 371
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=81.06 E-value=0.79 Score=43.95 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+.|+|+|.++|||||+...|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35999999999999999998643
No 372
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=80.84 E-value=0.78 Score=44.28 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.1
Q ss_pred CEEEEEccCCCCHHHHHHHHh
Q 003355 48 PQVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~ 68 (827)
|.|+++|.++|||||+-..|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999999999885
No 373
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=80.78 E-value=0.43 Score=47.18 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|+|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 374
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=80.78 E-value=0.88 Score=45.13 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=18.6
Q ss_pred EEEEEccCCCCHHHHHHHHh
Q 003355 49 QVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~ 68 (827)
.|+|+|..+|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999995
No 375
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=80.75 E-value=0.83 Score=44.84 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=20.1
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|+|.|..+|||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 376
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=80.73 E-value=0.69 Score=46.00 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-++|+|..|+|||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999965
No 377
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=80.63 E-value=0.79 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..||||||||+.|.|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999973
No 378
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=80.62 E-value=1 Score=52.83 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=24.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCccCCCcc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP~~~g~~ 80 (827)
.++|+|..||||||||+.|.|.. +-..|.+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~I 413 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKV 413 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceEE
Confidence 58999999999999999999973 3334433
No 379
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=80.59 E-value=0.85 Score=44.26 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
-|+|.|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 380
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=80.48 E-value=0.64 Score=54.28 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|+.|||||||++.|.|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999997
No 381
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=80.48 E-value=0.67 Score=54.19 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.+++||+.|||||||++.|+|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999997
No 382
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=80.23 E-value=0.99 Score=43.76 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
+.|+|+|..+|||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999863
No 383
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.19 E-value=0.88 Score=43.76 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=20.1
Q ss_pred CCEEEEEccCCCCHHHHHHHHh
Q 003355 47 LPQVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~ 68 (827)
.+.|+++|..+|||||+...|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4569999999999999999997
No 384
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=79.88 E-value=0.65 Score=51.56 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=43.5
Q ss_pred ccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCCCc---------ccchHHHHHHHHhC----CC
Q 003355 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---------LANSDALQIAGIAD----PD 214 (827)
Q Consensus 148 ~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---------~~~~d~l~la~~~d----p~ 214 (827)
..+.|+||.|-- ..+.+...|.+..+++|+++.-.+.| -.-.++..+...+. ..
T Consensus 217 v~l~iwDtaGQe-------------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 217 VNFHMFDVGGQR-------------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp EEEEEEEECCSG-------------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred ccceecccchhh-------------hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 578999999932 34556678999888666665443311 11123334444332 23
Q ss_pred CCceEEeeecCCCCC
Q 003355 215 GYRTIGIITKLDIMD 229 (827)
Q Consensus 215 g~rtIgVlTK~D~~~ 229 (827)
..++|+|+||.|+..
T Consensus 284 ~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TISVILFLNKQDLLA 298 (402)
T ss_dssp SCCEEEEEECHHHHH
T ss_pred CCeEEEEEEChhhhh
Confidence 578999999999853
No 385
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=79.81 E-value=0.92 Score=44.65 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
..|+|+|..+|||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 386
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=79.79 E-value=0.99 Score=44.80 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.|+|+|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 387
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=79.62 E-value=0.94 Score=44.63 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
..|+|+|..+|||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999974
No 388
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=79.61 E-value=0.76 Score=48.27 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-++|+|..|+|||||+..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999999986
No 389
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=79.43 E-value=1.8 Score=43.52 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=30.9
Q ss_pred CchHHHHHHHHHHHHHhCCCCCCCCC---EEEEEccCCCCHHHHHHHHhC
Q 003355 23 GSVIPLVNKLQDIFAQLGSQSTIELP---QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 23 ~~~~~~~~~l~d~~~~~g~~~~~~lP---~IvVvG~qssGKSSlLnaL~G 69 (827)
-+++..+..|...++. +| .|++.|++|+|||++..+|..
T Consensus 39 ~~~~~f~~~l~~~~~~--------iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 39 IEFITFLGALKSFLKG--------TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CCHHHHHHHHHHHHHT--------CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc--------CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4567778888887652 55 699999999999988888764
No 390
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=79.33 E-value=0.68 Score=54.00 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.+++||+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 391
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=79.30 E-value=0.99 Score=43.57 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.|++.|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 392
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=79.26 E-value=1 Score=43.67 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|+|+|..+|||||+...|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 393
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=79.19 E-value=0.61 Score=54.28 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.+++||+.|||||||++.|.|.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999997
No 394
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=78.93 E-value=1 Score=42.73 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
+.|+|+|..+|||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999853
No 395
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=78.92 E-value=1.1 Score=42.38 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.|+|+|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 396
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=78.82 E-value=0.97 Score=48.74 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.7
Q ss_pred CEEEEEccCCCCHHHHHHHHh
Q 003355 48 PQVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~ 68 (827)
.-.+|+|+.++||||+++||.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999985
No 397
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=78.75 E-value=1.1 Score=43.33 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.8
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.|+|+|..+|||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 398
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=78.62 E-value=0.98 Score=49.37 Aligned_cols=23 Identities=48% Similarity=0.686 Sum_probs=19.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~ 68 (827)
+-.-.+++|+.+|||||+|+||.
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 33567999999999999999985
No 399
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=78.58 E-value=1.2 Score=43.27 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
+.|+|+|..+|||||+...|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 400
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=78.38 E-value=2.8 Score=38.89 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 28 ~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.+.++.+.+..+. ..+.| |.+.|++|+|||++..+|...
T Consensus 9 ~~~~~~~~~~~~a---~~~~~-vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 9 WINQYRRRLQQLS---ETDIA-VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHHHHT---TCCSC-EEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh---CCCCC-EEEECCCCCCHHHHHHHHHHh
Confidence 3444555444443 22344 899999999999999999754
No 401
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=78.24 E-value=1 Score=44.75 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=19.5
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.|+|+|..+|||||+.+.|.+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 402
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=78.24 E-value=1.1 Score=43.69 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|+|+|..+|||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46899999999999999999854
No 403
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=78.22 E-value=2.4 Score=40.04 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=20.8
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..-|+++|..|+|||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998754
No 404
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=77.62 E-value=1.2 Score=42.86 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.4
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
..|+|+|..+|||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 405
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=77.62 E-value=1.3 Score=44.48 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.0
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
..|+|+|..+|||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999973
No 406
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=77.47 E-value=1.1 Score=52.46 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEccCCCCHHHHHHHHhCCC
Q 003355 50 VAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~~ 71 (827)
++++|..|||||||++.|.|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999999974
No 407
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=77.43 E-value=0.41 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=22.2
Q ss_pred CCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 45 ~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+.-..++++|..||||||||++|.+.
T Consensus 58 ~~~G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 58 LGGGFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp CCSSEEEEEESHHHHHHHHTHHHHHH
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 33348999999999999999999765
No 408
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=77.32 E-value=1.4 Score=43.15 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
|.|+|.|..+|||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 409
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=77.31 E-value=0.97 Score=49.38 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+-.-.+++|+.++||||+|++|.+.
T Consensus 25 ~~g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 25 PEGVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCChhHHHHHHHHh
Confidence 3346799999999999999999864
No 410
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=77.26 E-value=1.7 Score=46.91 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|.++|+|..|+|||++++++.+.
T Consensus 43 ~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 43 HYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999875
No 411
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=77.16 E-value=1 Score=48.85 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..++|||||++.|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 412
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.08 E-value=6.7 Score=43.36 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=26.6
Q ss_pred HHHHHhCCCCCCCCC-EEEEEccCCCCHHHHHHHHhCC
Q 003355 34 DIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 34 d~~~~~g~~~~~~lP-~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+++..+|+ ..| -|.+.|++|+|||++..||.+.
T Consensus 172 e~f~~~gi----~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 172 ELFESLGI----AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp HHHHHHTC----CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHHHhCCC----CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 45677774 344 4999999999999999999864
No 413
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=77.02 E-value=0.21 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=19.6
Q ss_pred EEEEccCCCCHHHHHHHHhCCC
Q 003355 50 VAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~~ 71 (827)
++|+|+.+|||||||++|.|.-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4688999999999999999973
No 414
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=77.01 E-value=1 Score=46.65 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred CCEEEEEccCCCCHHHHHHHHhC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G 69 (827)
-..|+++|..+|||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999965
No 415
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=76.94 E-value=1.4 Score=43.89 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.|+|+|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999863
No 416
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=76.77 E-value=1 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.3
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
..++|+|..++||||||++|.+.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 357999999999999999999863
No 417
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=76.64 E-value=1.2 Score=47.52 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.0
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-...+++|..+|||||||+||...
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHHT
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH
Confidence 347899999999999999999854
No 418
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=76.23 E-value=1.4 Score=43.27 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.2
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.|+|+|..+|||||+.+.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999863
No 419
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=76.11 E-value=2.6 Score=40.96 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 27 ~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..+..|.+.+..- ..+.|++.|..|+|||+++.++...
T Consensus 24 ~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 24 EVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3556666655432 3344999999999999999998753
No 420
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=76.08 E-value=1.1 Score=50.16 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++++|..++|||||++.|.|..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999999973
No 421
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=76.05 E-value=1.4 Score=43.17 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
..|+|+|..+|||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999873
No 422
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=76.04 E-value=1.4 Score=44.07 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
..|+|+|..+|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999863
No 423
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=75.98 E-value=0.53 Score=51.34 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=41.5
Q ss_pred cccEEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCccEEEeecCCC---------CcccchHHHHHHHHhC----C
Q 003355 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN---------SDLANSDALQIAGIAD----P 213 (827)
Q Consensus 147 ~~~ltLVDlPGi~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~---------~d~~~~d~l~la~~~d----p 213 (827)
...+.|+||.|-- ..+.+...|.+..+++|+++.-.. ..-.-.++..+...+. .
T Consensus 182 ~v~l~iwDtaGQe-------------~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQR-------------NERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCST-------------TGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCch-------------hhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 3579999999942 334556678888886666654321 1111122333443332 1
Q ss_pred CCCceEEeeecCCCCC
Q 003355 214 DGYRTIGIITKLDIMD 229 (827)
Q Consensus 214 ~g~rtIgVlTK~D~~~ 229 (827)
...++|+|+||.|+..
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 3578999999999863
No 424
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=75.92 E-value=1 Score=43.13 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=15.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
..|+|+|..+|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999863
No 425
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=75.83 E-value=1.4 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
+-|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 426
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=75.68 E-value=1.2 Score=43.96 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
-++|+|..++|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999998
No 427
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=75.57 E-value=1.3 Score=46.76 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCC-EEEEEccCCCCHHHHHHHHhCC
Q 003355 24 SVIPLVNKLQDIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 24 ~~~~~~~~l~d~~~~~g~~~~~~lP-~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.+..+++++..- .++......-| -|+|+|.+||||||+...|...
T Consensus 11 ~~~~~~~~~~~~--~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 11 QFENRLNDNLEE--LIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHHH--HHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhccccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444455544332 23322223334 4788999999999999999753
No 428
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=75.47 E-value=1.6 Score=43.46 Aligned_cols=22 Identities=18% Similarity=0.361 Sum_probs=19.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
..|+|+|..+|||||+...|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 429
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=75.33 E-value=1.2 Score=44.65 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHhCCCCCc
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~~lP 74 (827)
-++|+|..++|||||+..|++.-.+|
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~ 51 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLP 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCc
Confidence 47899999999999999999853333
No 430
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=75.21 E-value=1.2 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+++|..|+|||||+.+|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999974
No 431
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=74.95 E-value=4.6 Score=42.52 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 28 ~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.+++|.+.+.. | +-|+|.|..++|||||+..+...
T Consensus 20 el~~L~~~l~~-~-------~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 20 ESRKLEESLEN-Y-------PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHH-C-------SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-------CeEEEECCCcCCHHHHHHHHHHH
Confidence 34555555443 2 67999999999999999999754
No 432
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=74.94 E-value=1.3 Score=43.98 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.3
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|+|+|..+|||||+...|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 433
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=74.78 E-value=1.3 Score=47.64 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.4
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
...++++|++|+|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 355999999999999999999875
No 434
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=74.75 E-value=1.5 Score=45.10 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+|+|.++||||||...|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999999753
No 435
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=73.88 E-value=1.8 Score=41.07 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=19.2
Q ss_pred CCCEEEEEccCCCCHHHHHHHHh
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~ 68 (827)
..-.|+|+|..+|||||+...|.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHH
Confidence 34569999999999999999985
No 436
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=73.80 E-value=12 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++|+|+.++||||+|+.|.+.
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 5899999999999999998643
No 437
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=73.62 E-value=1.5 Score=56.13 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++|||..|||||||++.|+|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 6999999999999999999996
No 438
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=73.37 E-value=1.9 Score=43.32 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.|+|+|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 439
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=73.35 E-value=1.7 Score=42.87 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.7
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G 69 (827)
.-..|+++|..+|||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999999864
No 440
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=73.34 E-value=1.1 Score=57.27 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|++||..|||||||++.|.|.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6999999999999999999986
No 441
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=72.43 E-value=4 Score=42.63 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=25.1
Q ss_pred HHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 37 AQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 37 ~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
...|+...-...-|++.|++|+|||++..+|...
T Consensus 57 ~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 57 QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456544444456999999999999999877643
No 442
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=72.34 E-value=2.2 Score=45.61 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.3
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+-|+|+|.++||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 46899999999999999999744
No 443
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=72.20 E-value=2.2 Score=42.55 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
..|+|+|..+|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999853
No 444
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=71.95 E-value=2 Score=43.60 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+|.|..+|||||+++.|...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 445
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=71.92 E-value=1.1 Score=55.00 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
.++|+|..||||||||+.|+|.-
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 446
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=71.86 E-value=2.1 Score=43.64 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.7
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
..|+|+|..+|||||+...|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999963
No 447
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=71.70 E-value=2.2 Score=42.95 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
..|+|+|..+|||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 448
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=71.54 E-value=1.7 Score=45.22 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=19.3
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.++|+|..|+|||||+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 449
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=71.48 E-value=3.5 Score=38.95 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.7
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.+-|+|+|..|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998754
No 450
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=71.34 E-value=1.4 Score=45.22 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=21.5
Q ss_pred CCCC-EEEEEccCCCCHHHHHHHHhCC
Q 003355 45 IELP-QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 45 ~~lP-~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..-| .|+++|.+||||||+...|...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3444 5789999999999999999764
No 451
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=70.91 E-value=3.2 Score=44.82 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=27.6
Q ss_pred CEEEEEccCCCCHHHHHHHHhCCC---C-------CccCCCccccce
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGRD---F-------LPRGNDICTRRP 84 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~~---~-------lP~~~g~~Tr~p 84 (827)
+-|+|+|.++||||+|...|...- | +.++-.+.|+.|
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp 87 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKI 87 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCC
Confidence 469999999999999999998641 1 234455667666
No 452
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.65 E-value=1.6 Score=46.66 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.1
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
..|.++++|+.|+||||++.+|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4566999999999999999999884
No 453
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=70.46 E-value=2.1 Score=43.73 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
..|+|.|..+|||||+-+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
No 454
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=70.42 E-value=2 Score=43.40 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.4
Q ss_pred CCEEEEEccCCCCHHHHHHHHhC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G 69 (827)
...|+|+|..+|||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999975
No 455
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=70.41 E-value=21 Score=37.85 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCE-EEEEccCCCCHHHHHHHHhC
Q 003355 24 SVIPLVNKLQDIFAQLGSQSTIELPQ-VAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 24 ~~~~~~~~l~d~~~~~g~~~~~~lP~-IvVvG~qssGKSSlLnaL~G 69 (827)
..-..+..|...++. | .+|. +.+.|..|+|||++..++..
T Consensus 6 w~~~~~~~l~~~i~~-~-----~~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA-G-----RGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp GGHHHHHHHHHHHHT-T-----CCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHc-C-----CcceeEEEECCCCchHHHHHHHHHH
Confidence 344455555554432 2 3454 89999999999999998864
No 456
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=70.21 E-value=6.2 Score=38.32 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 25 VIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 25 ~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
...++..+...+...... ....-|++.|..|+|||+|+.+|...
T Consensus 34 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp HHHHHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc--cCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 444666666666554311 12256999999999999999999864
No 457
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=69.98 E-value=2.2 Score=44.72 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=18.8
Q ss_pred EEEEEccCCCCHHHHHHHHh
Q 003355 49 QVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~ 68 (827)
.|+|+|..+|||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 458
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=69.54 E-value=1.9 Score=55.09 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.+++||..|||||||++.|.|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 459
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=69.38 E-value=2.1 Score=48.92 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.4
Q ss_pred CCEEEEEccCCCCHHHHHHHHhC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G 69 (827)
.|.++|+|.++||||++|++|+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999875
No 460
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=69.35 E-value=6 Score=38.68 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 28 ~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++.|...+..-. .-+-++|.|..|+|||+++.++...
T Consensus 31 ~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 31 VLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp HHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555665554321 1235899999999999999999753
No 461
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=69.33 E-value=4.7 Score=41.19 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.2
Q ss_pred EEEEccCCCCHHHHHHHHhCC
Q 003355 50 VAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~ 70 (827)
|++.|.+|+|||++..+|.+.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999999853
No 462
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=69.10 E-value=2.1 Score=43.76 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+++|.+|+|||+++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 463
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=68.91 E-value=5.5 Score=43.31 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 27 ~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.+++++.+.++.. +. .=..+.|+++|..++||||+..+|.+.
T Consensus 6 ~L~~~il~~l~~~-i~-~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 6 KLADDVLQLLDNR-IE-DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHHHT-TT-TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hc-cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4455555444321 11 124678999999999999999988764
No 464
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=68.84 E-value=5.7 Score=40.14 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.2
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+-|++.|.+|+|||++..+|...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999753
No 465
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=68.83 E-value=2.9 Score=41.49 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 26 IPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 26 ~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-..+..|...... + .-+-|++.|..|+|||+++.+|...
T Consensus 37 ~~~~~~l~~~~~~-~-----~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 37 DELIGALKSAASG-D-----GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp HHHHHHHHHHHHT-C-----SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-C-----CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3455666655331 1 3467999999999999999999754
No 466
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=68.80 E-value=2.5 Score=45.17 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.5
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
+-|+|+|.++||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578899999999999999974
No 467
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=68.65 E-value=2.9 Score=42.72 Aligned_cols=22 Identities=45% Similarity=0.466 Sum_probs=19.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G 69 (827)
..|+|+|..+|||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999973
No 468
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=68.63 E-value=1.4 Score=50.92 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+++|..|||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 4789999999999999999987
No 469
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=68.59 E-value=2.5 Score=44.17 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.3
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.|+|+|.++|||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 470
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=68.38 E-value=2.1 Score=52.64 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.++++|..|||||||++.|.|-
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999953
No 471
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=67.60 E-value=3.5 Score=38.12 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=19.3
Q ss_pred EEEEccCCCCHHHHHHHHhCC
Q 003355 50 VAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~ 70 (827)
|.+.|++|+|||++..+|...
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 899999999999999998664
No 472
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=66.92 E-value=4.8 Score=42.47 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+-|+|.|..++|||||++.+...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999999999998754
No 473
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.05 E-value=2.6 Score=45.03 Aligned_cols=37 Identities=24% Similarity=0.550 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 28 ~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+++.|...+.. | .+|.+++.|+.|+||||++.+|.+.
T Consensus 33 ~~~~L~~~i~~-g-----~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 33 VITTVRKFVDE-G-----KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHHHT-T-----CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 55556554442 2 4566999999999999999999876
No 474
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=65.90 E-value=6.1 Score=44.28 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCCCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhC
Q 003355 19 VPLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 19 ~~~~~~~~~~~~~l~d~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G 69 (827)
..|.+.....+..+.+.+.. + -+-++|.|..|+|||+++.++..
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~-~------~~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKE-K------KHHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHS-S------SCEEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhc-C------CCEEEEEeCCCCCHHHHHHHHHH
Confidence 34666666677766554332 1 13699999999999999999874
No 475
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=65.80 E-value=5.3 Score=42.50 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=33.4
Q ss_pred HhcCCccEEEeecCCCC-cccchHHHHHHHHhCCCCCceEEeeecCCCCCCc
Q 003355 181 YIKQPSCLILAVTPANS-DLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (827)
Q Consensus 181 yi~~~~~iIL~V~~a~~-d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~~ 231 (827)
.+.+.+ .++.|+++.. ++.....-+++..+...+.+.++|+||+|+.++.
T Consensus 83 ~~anvD-~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 83 PICNVD-QAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TEECCC-EEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred HHHhCC-EEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 455665 6777777774 4444333344444445689999999999999763
No 476
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=65.78 E-value=5.5 Score=41.00 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=24.9
Q ss_pred HHHHhCCCCCCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 35 IFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 35 ~~~~~g~~~~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
++..+|.. ...-|++.|.+|+|||+|+.+|...
T Consensus 42 ~~~~~~~~---~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 42 LFEKVGIE---PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp HHHHHCCC---CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhcCCC---CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34445532 2345999999999999999999764
No 477
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=65.75 E-value=1.9 Score=51.05 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=18.0
Q ss_pred EEEEEccCCCCHHHHHHHHh
Q 003355 49 QVAVVGSQSSGKSSVLEALV 68 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~ 68 (827)
.++|+|..+||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 58999999999999998765
No 478
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=64.74 E-value=3 Score=53.15 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|++||..|||||||++.|.|.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999997
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=64.68 E-value=3.4 Score=41.77 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+|.|..+|||||+++.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 480
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=64.28 E-value=3.6 Score=41.06 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.8
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.-|+++|.+++|||+|...|..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999866
No 481
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=64.14 E-value=4.7 Score=46.42 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=23.6
Q ss_pred CCCCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 44 TIELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 44 ~~~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.+.-+-++++|++|+|||||+.+|.+.
T Consensus 105 ~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 105 SLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp SCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 346678999999999999999999875
No 482
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=63.38 E-value=2.3 Score=44.82 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=17.1
Q ss_pred CCEEEEEccCCCCHHHHHHHHhC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G 69 (827)
.+-|+|.|..+||||||.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999864
No 483
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=62.98 E-value=3.1 Score=45.05 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHhCCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGRD 71 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~~ 71 (827)
-+.|+|..|+|||||+..|++.-
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999864
No 484
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=62.88 E-value=3.6 Score=45.03 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.9
Q ss_pred CCCEEEEEccCCCCHHHHHHHHhCC
Q 003355 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 46 ~lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.-+.++|+|.+++|||++++.|++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999976
No 485
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=62.87 E-value=4.3 Score=40.50 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.|+++|.++|||+|.-..|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 486
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=62.53 E-value=2.8 Score=43.44 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=34.0
Q ss_pred HHHHHHhcCCccEEEeecCCCCcccchHHHHHHHHhCCCCCceEEeeecCCCCCC
Q 003355 176 TMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (827)
Q Consensus 176 ~lv~~yi~~~~~iIL~V~~a~~d~~~~d~l~la~~~dp~g~rtIgVlTK~D~~~~ 230 (827)
..+...+.+.+ +|+.|++|......... .+. .+ +++.|+|+||+|+.+.
T Consensus 13 ~~~~~~l~~~D-~vl~VvDar~P~~~~~~-~l~-ll---~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 13 RQIKDLLRLVN-TVVEVRDARAPFATSAY-GVD-FS---RKETIILLNKVDIADE 61 (262)
T ss_dssp HHHHHHHTTCS-EEEEEEETTSTTTTSCT-TSC-CT---TSEEEEEEECGGGSCH
T ss_pred HHHHHHHhhCC-EEEEEeeCCCCCcCcCh-HHH-hc---CCCcEEEEECccCCCH
Confidence 44567788776 77888888766554321 111 22 7999999999999974
No 487
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=62.17 E-value=4 Score=40.77 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.9
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
-++|+|.+++|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999777653
No 488
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=61.78 E-value=2.6 Score=43.36 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=20.9
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
...|+|.|..||||||+.+.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998754
No 489
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=61.60 E-value=4.9 Score=45.52 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+++|.+|+|||+|+.+|.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
No 490
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=61.50 E-value=3.8 Score=45.46 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.9
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
.-|+++|.++|||||+...|...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45888999999999999999753
No 491
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=61.45 E-value=6.8 Score=37.95 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=15.7
Q ss_pred EEEEE-ccCCCCHHHHHHHHh
Q 003355 49 QVAVV-GSQSSGKSSVLEALV 68 (827)
Q Consensus 49 ~IvVv-G~qssGKSSlLnaL~ 68 (827)
.|+|+ +..|+||||+.-.|.
T Consensus 3 vi~v~s~kgG~GKTt~a~~la 23 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIA 23 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHH
Confidence 46666 678899999987775
No 492
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=61.13 E-value=4.2 Score=43.92 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.3
Q ss_pred CEEEEEccCCCCHHHHHHHHhCC
Q 003355 48 PQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 48 P~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+-|+|+|..+||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 36899999999999999998754
No 493
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=61.09 E-value=5.9 Score=44.70 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
+++++|..++|||||++.|...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh
Confidence 6999999999999999998764
No 494
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=61.00 E-value=4 Score=47.21 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G 69 (827)
.|.++|+|.++||||++|++|+-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999875
No 495
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=59.89 E-value=7.7 Score=40.63 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=20.5
Q ss_pred CCCCCEE-EEEccCCCCHHHHHHHHhC
Q 003355 44 TIELPQV-AVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 44 ~~~lP~I-vVvG~qssGKSSlLnaL~G 69 (827)
....|.. .+.|.+|+|||+|..+|..
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3556654 5569999999999999974
No 496
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=59.81 E-value=4.8 Score=39.72 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHhC
Q 003355 49 QVAVVGSQSSGKSSVLEALVG 69 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G 69 (827)
.|+++|..+|||||+...|..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 497
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=59.65 E-value=3.7 Score=46.95 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=0.0
Q ss_pred EEEEccCCCCHHHHHHH--HhC
Q 003355 50 VAVVGSQSSGKSSVLEA--LVG 69 (827)
Q Consensus 50 IvVvG~qssGKSSlLna--L~G 69 (827)
++|+|..+||||||+.. +.|
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
No 498
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=59.39 E-value=3.9 Score=43.73 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCEEEEEccCCCCHHHHHHHHhCC
Q 003355 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 47 lP~IvVvG~qssGKSSlLnaL~G~ 70 (827)
...|+|.|..|+|||||++++.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999874
No 499
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=59.31 E-value=5.1 Score=39.20 Aligned_cols=21 Identities=48% Similarity=0.669 Sum_probs=19.1
Q ss_pred EEEEccCCCCHHHHHHHHhCC
Q 003355 50 VAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 50 IvVvG~qssGKSSlLnaL~G~ 70 (827)
|.|+|..+||||++-+.|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999744
No 500
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=59.29 E-value=3.6 Score=46.93 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHhCC
Q 003355 49 QVAVVGSQSSGKSSVLEALVGR 70 (827)
Q Consensus 49 ~IvVvG~qssGKSSlLnaL~G~ 70 (827)
-|+++|.+|+|||+|+++|.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999975
Done!