Query 003356
Match_columns 827
No_of_seqs 547 out of 3602
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 21:57:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2006 WD40 repeat protein [G 100.0 1E-60 2.2E-65 534.3 24.5 562 228-815 121-720 (1023)
2 KOG0291 WD40-repeat-containing 100.0 1E-33 2.2E-38 305.7 42.8 408 22-484 99-553 (893)
3 KOG0271 Notchless-like WD40 re 100.0 9.3E-36 2E-40 298.7 24.9 344 38-479 85-479 (480)
4 KOG0271 Notchless-like WD40 re 100.0 4.1E-33 9E-38 279.7 23.4 310 20-418 114-479 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-32 4.6E-37 278.6 21.2 276 66-479 174-458 (459)
6 KOG0318 WD40 repeat stress pro 100.0 1.5E-29 3.3E-34 263.8 35.5 376 23-419 194-601 (603)
7 PF07064 RIC1: RIC1; InterPro 100.0 1.1E-32 2.3E-37 280.1 10.5 132 679-812 3-136 (258)
8 KOG0291 WD40-repeat-containing 100.0 4.6E-27 1E-31 254.5 49.4 451 22-571 58-550 (893)
9 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-29 3.7E-34 257.4 19.5 265 222-527 179-458 (459)
10 KOG0318 WD40 repeat stress pro 100.0 9.5E-26 2.1E-30 235.6 46.4 455 21-571 61-560 (603)
11 KOG0319 WD40-repeat-containing 100.0 2.1E-27 4.6E-32 257.2 33.5 423 21-482 105-620 (775)
12 KOG0286 G-protein beta subunit 100.0 8.5E-27 1.8E-31 227.4 27.1 283 66-479 54-343 (343)
13 KOG0273 Beta-transducin family 99.9 1.4E-25 2.9E-30 231.8 27.1 321 66-512 177-511 (524)
14 KOG0306 WD40-repeat-containing 99.9 1.2E-24 2.5E-29 235.8 35.5 426 23-482 69-665 (888)
15 KOG0279 G protein beta subunit 99.9 4.5E-25 9.7E-30 214.3 27.3 267 204-512 11-301 (315)
16 KOG0279 G protein beta subunit 99.9 2.4E-24 5.3E-29 209.2 28.6 277 253-571 11-313 (315)
17 KOG0263 Transcription initiati 99.9 1E-25 2.2E-30 247.1 20.7 242 204-470 447-703 (707)
18 KOG0263 Transcription initiati 99.9 1.4E-25 3E-30 246.1 20.8 228 221-482 381-650 (707)
19 KOG0284 Polyadenylation factor 99.9 5.1E-26 1.1E-30 231.0 16.0 277 67-480 96-379 (464)
20 KOG0276 Vesicle coat complex C 99.9 9.2E-25 2E-29 232.0 26.1 357 128-571 9-380 (794)
21 KOG0286 G-protein beta subunit 99.9 2.1E-24 4.6E-29 210.7 26.2 278 202-527 49-343 (343)
22 KOG0645 WD40 repeat protein [G 99.9 1.2E-23 2.7E-28 203.5 29.8 278 253-571 10-311 (312)
23 KOG0273 Beta-transducin family 99.9 2.7E-24 5.9E-29 222.2 26.2 316 25-480 184-522 (524)
24 KOG0319 WD40-repeat-containing 99.9 4.6E-23 9.9E-28 223.8 35.4 489 22-569 65-617 (775)
25 KOG0284 Polyadenylation factor 99.9 2.6E-25 5.7E-30 225.8 16.8 266 223-529 101-380 (464)
26 KOG0276 Vesicle coat complex C 99.9 4.2E-23 9.1E-28 219.5 33.0 265 67-414 13-293 (794)
27 KOG0306 WD40-repeat-containing 99.9 1.5E-22 3.2E-27 219.7 36.0 240 255-529 371-664 (888)
28 KOG0645 WD40 repeat protein [G 99.9 3E-23 6.6E-28 200.8 26.4 271 205-528 11-310 (312)
29 KOG0315 G-protein beta subunit 99.9 1.1E-23 2.4E-28 201.2 21.7 225 226-484 48-291 (311)
30 KOG0315 G-protein beta subunit 99.9 1.8E-22 3.9E-27 193.0 27.2 280 32-398 11-305 (311)
31 KOG0295 WD40 repeat-containing 99.9 1.1E-23 2.3E-28 211.5 17.7 256 224-515 114-397 (406)
32 KOG0296 Angio-associated migra 99.9 1.6E-22 3.5E-27 203.2 25.6 322 22-481 67-398 (399)
33 KOG0266 WD40 repeat-containing 99.9 9.6E-23 2.1E-27 230.1 26.6 267 137-480 166-453 (456)
34 KOG0281 Beta-TrCP (transducin 99.9 4.2E-24 9.1E-29 212.3 13.6 272 132-483 197-479 (499)
35 KOG0266 WD40 repeat-containing 99.9 1.6E-22 3.4E-27 228.3 27.3 268 224-529 165-454 (456)
36 KOG1408 WD40 repeat protein [F 99.9 4.2E-21 9.1E-26 206.5 34.4 277 271-572 395-714 (1080)
37 cd00200 WD40 WD40 domain, foun 99.9 2.3E-21 5.1E-26 204.2 30.9 274 67-479 9-289 (289)
38 KOG0278 Serine/threonine kinas 99.9 4E-23 8.6E-28 197.3 14.5 236 204-484 55-300 (334)
39 KOG0295 WD40 repeat-containing 99.9 3.5E-22 7.7E-27 200.7 21.5 277 128-480 104-405 (406)
40 KOG0281 Beta-TrCP (transducin 99.9 4.3E-23 9.3E-28 205.2 14.7 262 221-529 198-477 (499)
41 PLN00181 protein SPA1-RELATED; 99.9 2.6E-21 5.6E-26 234.7 33.2 227 229-480 544-792 (793)
42 KOG0305 Anaphase promoting com 99.9 1.3E-21 2.9E-26 211.9 27.0 273 26-482 184-462 (484)
43 KOG0293 WD40 repeat-containing 99.9 9.3E-22 2E-26 200.1 21.3 274 25-381 230-513 (519)
44 KOG0292 Vesicle coat complex C 99.9 2.6E-19 5.7E-24 197.3 39.9 266 137-482 16-322 (1202)
45 KOG0285 Pleiotropic regulator 99.9 3.1E-21 6.6E-26 193.1 22.1 275 254-570 148-438 (460)
46 PLN00181 protein SPA1-RELATED; 99.9 1.1E-20 2.5E-25 229.0 31.6 272 222-527 487-791 (793)
47 KOG0285 Pleiotropic regulator 99.9 5.1E-21 1.1E-25 191.5 23.0 282 127-480 146-438 (460)
48 KOG0293 WD40 repeat-containing 99.9 2.7E-21 5.9E-26 196.7 19.3 223 224-481 275-513 (519)
49 cd00200 WD40 WD40 domain, foun 99.9 6.9E-20 1.5E-24 192.9 31.0 268 206-526 7-288 (289)
50 KOG0265 U5 snRNP-specific prot 99.9 2E-20 4.2E-25 183.9 24.4 221 254-507 44-277 (338)
51 KOG0296 Angio-associated migra 99.9 5.1E-20 1.1E-24 185.4 27.9 282 126-486 58-361 (399)
52 KOG0643 Translation initiation 99.9 3.8E-21 8.3E-26 185.7 18.6 265 253-595 6-296 (327)
53 KOG0265 U5 snRNP-specific prot 99.9 1.4E-20 2.9E-25 185.0 22.6 242 205-486 44-301 (338)
54 KOG0313 Microtubule binding pr 99.9 4E-20 8.7E-25 186.9 23.8 265 135-480 108-417 (423)
55 KOG0316 Conserved WD40 repeat- 99.9 5.4E-20 1.2E-24 174.7 23.1 250 254-550 14-275 (307)
56 KOG0277 Peroxisomal targeting 99.9 3.7E-20 7.9E-25 177.8 20.2 226 143-480 74-308 (311)
57 KOG0292 Vesicle coat complex C 99.9 2.4E-19 5.2E-24 197.6 29.2 227 226-484 17-283 (1202)
58 KOG2096 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 179.5 23.0 287 22-373 89-392 (420)
59 KOG1407 WD40 repeat protein [F 99.8 1.9E-19 4E-24 173.7 23.3 247 224-512 26-288 (313)
60 KOG0275 Conserved WD40 repeat- 99.8 4.2E-21 9.2E-26 189.3 11.9 258 222-516 217-499 (508)
61 KOG0640 mRNA cleavage stimulat 99.8 7E-20 1.5E-24 180.1 19.8 299 66-479 111-424 (430)
62 KOG0275 Conserved WD40 repeat- 99.8 1.1E-20 2.3E-25 186.5 14.0 222 226-479 271-507 (508)
63 KOG0282 mRNA splicing factor [ 99.8 8.8E-21 1.9E-25 197.3 13.6 246 253-513 210-494 (503)
64 PTZ00421 coronin; Provisional 99.8 4.9E-19 1.1E-23 199.3 28.8 201 253-485 71-294 (493)
65 KOG1408 WD40 repeat protein [F 99.8 6.6E-19 1.4E-23 189.8 28.2 213 259-482 461-714 (1080)
66 KOG0641 WD40 repeat protein [G 99.8 2.7E-18 5.9E-23 161.8 27.5 264 23-362 36-331 (350)
67 KOG2048 WD40 repeat protein [G 99.8 8.8E-17 1.9E-21 174.0 42.4 411 20-515 26-539 (691)
68 KOG0274 Cdc4 and related F-box 99.8 4.4E-19 9.6E-24 199.8 24.6 269 131-485 207-486 (537)
69 KOG2096 WD40 repeat protein [G 99.8 1.5E-18 3.2E-23 171.6 24.4 303 64-477 82-398 (420)
70 KOG0283 WD40 repeat-containing 99.8 5E-19 1.1E-23 196.6 23.5 202 204-482 365-577 (712)
71 KOG0643 Translation initiation 99.8 1.7E-18 3.6E-23 167.7 23.4 254 204-482 6-318 (327)
72 KOG1539 WD repeat protein [Gen 99.8 1.5E-16 3.3E-21 175.4 41.5 449 26-571 40-564 (910)
73 KOG0313 Microtubule binding pr 99.8 8.1E-19 1.8E-23 177.5 21.0 261 230-529 115-418 (423)
74 KOG0772 Uncharacterized conser 99.8 6.1E-19 1.3E-23 184.3 20.7 286 70-417 170-484 (641)
75 KOG1274 WD40 repeat protein [G 99.8 2.4E-18 5.3E-23 191.6 26.3 209 65-342 11-223 (933)
76 KOG0310 Conserved WD40 repeat- 99.8 2.6E-18 5.7E-23 179.4 23.4 278 64-480 23-308 (487)
77 KOG0640 mRNA cleavage stimulat 99.8 8.8E-19 1.9E-23 172.4 18.2 198 254-485 109-339 (430)
78 KOG2106 Uncharacterized conser 99.8 8.5E-17 1.8E-21 168.1 33.8 415 1-480 181-625 (626)
79 KOG1446 Histone H3 (Lys4) meth 99.8 3.2E-17 7E-22 163.2 27.7 277 67-419 14-302 (311)
80 PTZ00420 coronin; Provisional 99.8 2.3E-17 5.1E-22 186.5 30.3 237 240-509 54-319 (568)
81 KOG0316 Conserved WD40 repeat- 99.8 4.1E-18 8.9E-23 162.0 19.7 268 128-478 13-296 (307)
82 KOG0973 Histone transcription 99.8 4.7E-18 1E-22 193.4 23.9 259 226-516 21-347 (942)
83 KOG0288 WD40 repeat protein Ti 99.8 6.4E-19 1.4E-23 180.0 14.9 256 222-512 179-449 (459)
84 KOG0277 Peroxisomal targeting 99.8 2.9E-18 6.2E-23 164.9 18.0 217 256-505 59-287 (311)
85 KOG0973 Histone transcription 99.8 9.5E-18 2.1E-22 190.9 25.3 304 68-483 14-357 (942)
86 KOG0294 WD40 repeat-containing 99.8 1E-17 2.2E-22 165.9 22.0 223 225-483 48-283 (362)
87 KOG0289 mRNA splicing factor [ 99.8 1.9E-17 4.1E-22 170.2 24.2 226 230-488 231-469 (506)
88 KOG2048 WD40 repeat protein [G 99.8 4.1E-16 8.8E-21 168.8 35.2 282 68-419 26-318 (691)
89 KOG0308 Conserved WD40 repeat- 99.8 1.2E-18 2.5E-23 187.1 15.6 223 228-482 35-286 (735)
90 KOG1063 RNA polymerase II elon 99.8 7.4E-17 1.6E-21 174.6 29.3 392 69-529 193-699 (764)
91 KOG0310 Conserved WD40 repeat- 99.8 1.5E-17 3.3E-22 173.7 23.2 287 242-572 11-310 (487)
92 PTZ00421 coronin; Provisional 99.8 5.5E-17 1.2E-21 182.7 27.8 196 205-423 72-293 (493)
93 KOG1063 RNA polymerase II elon 99.8 4E-15 8.7E-20 161.3 40.5 301 32-380 26-390 (764)
94 KOG1539 WD repeat protein [Gen 99.8 2.8E-16 6E-21 173.5 31.9 409 27-480 166-647 (910)
95 KOG0274 Cdc4 and related F-box 99.8 3.7E-17 8E-22 184.3 25.4 262 260-571 212-482 (537)
96 KOG1407 WD40 repeat protein [F 99.8 1.3E-16 2.7E-21 154.3 25.0 286 66-490 19-310 (313)
97 KOG0283 WD40 repeat-containing 99.8 1.2E-17 2.5E-22 185.8 20.5 248 255-571 265-576 (712)
98 KOG0641 WD40 repeat protein [G 99.8 4.5E-16 9.9E-21 146.9 26.6 299 68-419 33-348 (350)
99 KOG0300 WD40 repeat-containing 99.8 2.9E-17 6.3E-22 162.1 19.1 256 228-508 158-456 (481)
100 KOG0282 mRNA splicing factor [ 99.8 5.5E-18 1.2E-22 176.6 14.2 275 127-479 209-503 (503)
101 KOG0772 Uncharacterized conser 99.8 8.2E-17 1.8E-21 168.6 22.4 295 125-480 160-487 (641)
102 KOG2106 Uncharacterized conser 99.8 5.1E-15 1.1E-19 154.9 35.4 416 22-572 157-582 (626)
103 PTZ00420 coronin; Provisional 99.8 2E-16 4.3E-21 179.0 26.6 216 205-464 71-318 (568)
104 KOG0639 Transducin-like enhanc 99.8 3.4E-17 7.3E-22 170.6 18.3 219 225-480 472-703 (705)
105 KOG0647 mRNA export protein (c 99.7 1.3E-16 2.8E-21 157.3 20.9 240 257-510 27-309 (347)
106 KOG0299 U3 snoRNP-associated p 99.7 2.5E-16 5.4E-21 163.5 23.4 265 222-514 146-445 (479)
107 KOG0305 Anaphase promoting com 99.7 1.1E-16 2.3E-21 174.0 21.6 264 262-571 183-461 (484)
108 KOG2919 Guanine nucleotide-bin 99.7 1.2E-16 2.6E-21 158.6 19.7 217 227-472 120-360 (406)
109 KOG0301 Phospholipase A2-activ 99.7 1.5E-16 3.4E-21 172.3 21.6 213 228-485 69-292 (745)
110 KOG1446 Histone H3 (Lys4) meth 99.7 3.1E-15 6.6E-20 149.2 28.5 272 22-384 17-306 (311)
111 KOG0308 Conserved WD40 repeat- 99.7 4.7E-17 1E-21 174.9 15.4 274 141-479 36-325 (735)
112 KOG0288 WD40 repeat protein Ti 99.7 3.9E-17 8.5E-22 167.0 14.1 259 138-478 183-458 (459)
113 KOG2055 WD40 repeat protein [G 99.7 8.7E-16 1.9E-20 159.3 23.5 224 66-362 212-447 (514)
114 KOG0289 mRNA splicing factor [ 99.7 5.8E-16 1.3E-20 159.3 21.4 227 259-528 221-459 (506)
115 KOG0299 U3 snoRNP-associated p 99.7 1.4E-15 3E-20 158.0 24.2 309 68-488 143-456 (479)
116 KOG1274 WD40 repeat protein [G 99.7 2.2E-15 4.8E-20 168.3 26.6 264 22-362 16-282 (933)
117 KOG1273 WD40 repeat protein [G 99.7 3E-15 6.4E-20 148.3 24.1 266 256-605 23-307 (405)
118 KOG1332 Vesicle coat complex C 99.7 2.8E-16 6.1E-21 150.5 15.8 251 254-573 8-288 (299)
119 KOG0639 Transducin-like enhanc 99.7 2.1E-16 4.6E-21 164.7 16.3 264 25-373 425-693 (705)
120 KOG0294 WD40 repeat-containing 99.7 1.7E-15 3.6E-20 150.3 21.8 237 254-574 40-284 (362)
121 KOG0264 Nucleosome remodeling 99.7 4.6E-15 9.9E-20 154.4 25.3 250 124-420 119-404 (422)
122 KOG1332 Vesicle coat complex C 99.7 8.7E-16 1.9E-20 147.2 18.3 235 229-489 22-295 (299)
123 KOG0278 Serine/threonine kinas 99.7 5.5E-16 1.2E-20 148.7 16.6 183 224-423 106-300 (334)
124 KOG0269 WD40 repeat-containing 99.7 7.2E-16 1.6E-20 169.0 19.1 284 70-422 42-342 (839)
125 KOG0301 Phospholipase A2-activ 99.7 1.8E-15 3.8E-20 164.2 20.9 213 228-481 23-249 (745)
126 KOG0646 WD40 repeat protein [G 99.7 6.8E-16 1.5E-20 160.6 15.9 264 32-361 51-330 (476)
127 KOG0650 WD40 repeat nucleolar 99.7 3.1E-15 6.7E-20 159.5 20.1 277 254-593 397-700 (733)
128 KOG1273 WD40 repeat protein [G 99.7 2.3E-14 4.9E-19 142.1 24.5 281 22-424 26-326 (405)
129 KOG2055 WD40 repeat protein [G 99.7 9.1E-15 2E-19 151.9 21.4 262 21-362 215-494 (514)
130 KOG0267 Microtubule severing p 99.7 1.6E-16 3.5E-21 172.7 8.5 216 227-476 37-262 (825)
131 KOG0647 mRNA export protein (c 99.7 1.7E-14 3.6E-19 142.6 21.4 269 21-362 29-305 (347)
132 KOG0268 Sof1-like rRNA process 99.6 2.5E-15 5.4E-20 151.5 15.0 250 254-529 63-345 (433)
133 KOG0267 Microtubule severing p 99.6 3.1E-16 6.6E-21 170.5 9.0 234 241-514 15-256 (825)
134 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 2.7E-13 5.9E-18 145.1 30.9 274 32-390 2-288 (300)
135 KOG4283 Transcription-coupled 99.6 1.9E-14 4E-19 141.4 18.3 222 255-484 41-279 (397)
136 KOG0268 Sof1-like rRNA process 99.6 2.8E-15 6E-20 151.2 12.7 271 68-381 67-345 (433)
137 KOG0646 WD40 repeat protein [G 99.6 5.2E-14 1.1E-18 146.7 21.3 226 240-484 61-310 (476)
138 KOG1036 Mitotic spindle checkp 99.6 2E-13 4.3E-18 135.7 24.2 271 68-472 14-294 (323)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 3.3E-13 7.2E-18 144.5 28.1 224 224-484 36-282 (300)
140 KOG1036 Mitotic spindle checkp 99.6 2.1E-13 4.5E-18 135.5 23.4 262 23-372 17-292 (323)
141 KOG0269 WD40 repeat-containing 99.6 1E-14 2.3E-19 160.0 15.6 196 262-529 93-296 (839)
142 KOG1034 Transcriptional repres 99.6 2.5E-13 5.5E-18 135.7 21.7 220 232-481 107-383 (385)
143 KOG4283 Transcription-coupled 99.6 1.7E-13 3.7E-18 134.7 19.9 292 131-480 42-364 (397)
144 KOG0264 Nucleosome remodeling 99.6 1.1E-13 2.3E-18 144.3 18.6 260 207-484 123-407 (422)
145 KOG2445 Nuclear pore complex c 99.6 3.9E-13 8.6E-18 133.2 20.6 270 22-336 16-317 (361)
146 KOG4378 Nuclear protein COP1 [ 99.6 1.9E-13 4E-18 142.9 18.8 214 257-506 80-303 (673)
147 KOG0300 WD40 repeat-containing 99.5 1.3E-13 2.9E-18 136.4 16.2 268 253-571 144-428 (481)
148 KOG1445 Tumor-specific antigen 99.5 2E-13 4.3E-18 146.2 16.8 237 267-574 590-845 (1012)
149 KOG2445 Nuclear pore complex c 99.5 1.9E-12 4.2E-17 128.4 21.9 244 226-480 21-317 (361)
150 KOG4328 WD40 protein [Function 99.5 1.5E-12 3.2E-17 135.5 20.2 278 66-417 185-492 (498)
151 KOG1538 Uncharacterized conser 99.5 6.4E-12 1.4E-16 135.5 25.0 255 23-373 16-282 (1081)
152 KOG0307 Vesicle coat complex C 99.5 1.4E-13 3E-18 158.0 11.5 206 254-487 113-333 (1049)
153 KOG0270 WD40 repeat-containing 99.5 9.8E-13 2.1E-17 136.5 16.5 221 229-484 191-452 (463)
154 KOG0650 WD40 repeat nucleolar 99.5 5E-12 1.1E-16 135.4 21.6 198 254-478 518-732 (733)
155 KOG0302 Ribosome Assembly prot 99.5 1.1E-12 2.4E-17 133.3 15.7 119 204-339 253-380 (440)
156 KOG4328 WD40 protein [Function 99.5 3.5E-12 7.6E-17 132.8 19.4 196 256-481 185-399 (498)
157 KOG1538 Uncharacterized conser 99.4 2E-12 4.4E-17 139.2 17.4 262 259-571 14-293 (1081)
158 KOG1963 WD40 repeat protein [G 99.4 1.6E-10 3.6E-15 129.8 33.0 355 23-483 164-540 (792)
159 KOG0771 Prolactin regulatory e 99.4 2.1E-12 4.5E-17 133.8 16.4 205 21-338 146-355 (398)
160 COG2319 FOG: WD40 repeat [Gene 99.4 1.5E-09 3.2E-14 120.7 40.5 351 23-482 69-443 (466)
161 KOG1524 WD40 repeat-containing 99.4 4E-12 8.7E-17 134.2 18.0 138 268-419 75-215 (737)
162 KOG0303 Actin-binding protein 99.4 5.4E-12 1.2E-16 129.0 17.9 209 302-571 76-294 (472)
163 PRK11028 6-phosphogluconolacto 99.4 3.3E-10 7.1E-15 123.6 32.9 232 37-337 9-258 (330)
164 KOG0302 Ribosome Assembly prot 99.4 5.4E-12 1.2E-16 128.4 16.0 200 254-483 148-380 (440)
165 KOG1524 WD40 repeat-containing 99.4 3.2E-11 6.8E-16 127.6 21.9 218 71-361 18-238 (737)
166 KOG1009 Chromatin assembly com 99.4 6.9E-11 1.5E-15 121.7 23.4 79 254-341 120-199 (434)
167 KOG0649 WD40 repeat protein [G 99.4 3E-11 6.5E-16 116.1 19.1 251 66-419 9-273 (325)
168 KOG2919 Guanine nucleotide-bin 99.4 1.1E-11 2.4E-16 123.7 16.8 229 28-328 120-361 (406)
169 KOG0321 WD40 repeat-containing 99.4 1.4E-11 3E-16 133.1 18.3 246 204-483 96-393 (720)
170 KOG0303 Actin-binding protein 99.4 5.2E-11 1.1E-15 121.9 21.4 198 254-484 78-297 (472)
171 KOG0771 Prolactin regulatory e 99.4 4.3E-12 9.3E-17 131.5 13.5 192 260-480 148-353 (398)
172 KOG4378 Nuclear protein COP1 [ 99.4 3.2E-11 6.9E-16 126.5 19.8 286 32-401 4-301 (673)
173 KOG0270 WD40 repeat-containing 99.4 1.6E-11 3.5E-16 127.6 17.0 193 267-484 191-407 (463)
174 KOG1009 Chromatin assembly com 99.3 2.7E-11 5.9E-16 124.6 16.2 128 226-362 21-177 (434)
175 KOG1034 Transcriptional repres 99.3 5.5E-11 1.2E-15 119.2 17.8 210 256-484 88-340 (385)
176 KOG2110 Uncharacterized conser 99.3 9.6E-10 2.1E-14 112.3 26.9 114 255-381 127-248 (391)
177 COG2319 FOG: WD40 repeat [Gene 99.3 8.9E-09 1.9E-13 114.4 37.6 319 67-487 65-406 (466)
178 KOG0644 Uncharacterized conser 99.3 3.7E-12 7.9E-17 140.9 9.3 224 222-480 194-467 (1113)
179 KOG1963 WD40 repeat protein [G 99.3 7.4E-09 1.6E-13 116.7 35.1 288 255-571 203-538 (792)
180 KOG0321 WD40 repeat-containing 99.3 1.4E-10 3.1E-15 125.4 20.2 291 25-362 55-372 (720)
181 KOG2111 Uncharacterized conser 99.3 7E-10 1.5E-14 111.2 23.6 233 25-339 11-258 (346)
182 KOG0307 Vesicle coat complex C 99.3 5.3E-12 1.2E-16 145.2 9.9 223 270-529 82-327 (1049)
183 PRK01742 tolB translocation pr 99.3 1.1E-10 2.3E-15 131.7 20.3 233 40-361 184-426 (429)
184 KOG0322 G-protein beta subunit 99.3 8.4E-11 1.8E-15 114.5 15.6 266 21-337 16-323 (323)
185 KOG1240 Protein kinase contain 99.3 8.7E-10 1.9E-14 127.4 25.3 217 71-347 1052-1283(1431)
186 KOG1517 Guanine nucleotide bin 99.3 4.1E-10 9E-15 128.0 21.3 297 71-483 1068-1383(1387)
187 KOG2394 WD40 protein DMR-N9 [G 99.2 3.7E-11 8.1E-16 127.4 11.8 145 208-362 219-386 (636)
188 PRK11028 6-phosphogluconolacto 99.2 7.4E-09 1.6E-13 112.9 30.2 268 232-529 4-304 (330)
189 KOG4497 Uncharacterized conser 99.2 4.5E-09 9.7E-14 105.5 25.3 219 22-336 11-239 (447)
190 KOG1188 WD40 repeat protein [G 99.2 7.8E-10 1.7E-14 111.7 17.6 191 80-343 41-248 (376)
191 KOG1007 WD repeat protein TSSC 99.2 2.9E-09 6.2E-14 105.2 21.1 216 256-479 123-358 (370)
192 KOG1188 WD40 repeat protein [G 99.2 3.2E-10 7E-15 114.4 14.7 186 269-484 41-245 (376)
193 KOG0642 Cell-cycle nuclear pro 99.2 2.3E-10 5E-15 122.5 13.3 229 224-484 300-564 (577)
194 KOG4227 WD40 repeat protein [G 99.2 7.8E-10 1.7E-14 112.9 16.1 251 254-529 53-322 (609)
195 KOG2110 Uncharacterized conser 99.1 6.8E-09 1.5E-13 106.1 21.9 231 22-339 8-250 (391)
196 KOG1587 Cytoplasmic dynein int 99.1 3.6E-09 7.8E-14 119.1 20.9 265 18-339 241-518 (555)
197 PRK01742 tolB translocation pr 99.1 3.2E-09 6.9E-14 119.8 19.7 207 223-463 208-426 (429)
198 KOG1517 Guanine nucleotide bin 99.1 6.6E-09 1.4E-13 118.4 21.4 276 22-362 1067-1363(1387)
199 KOG1240 Protein kinase contain 99.1 1.1E-08 2.3E-13 118.6 22.6 276 4-340 1031-1337(1431)
200 KOG2139 WD40 repeat protein [G 99.1 2.5E-09 5.4E-14 108.7 15.4 186 262-481 104-309 (445)
201 KOG1587 Cytoplasmic dynein int 99.1 2.6E-08 5.7E-13 112.2 24.8 216 206-482 289-517 (555)
202 PF04762 IKI3: IKI3 family; I 99.1 2.5E-06 5.5E-11 103.5 43.5 438 66-566 74-559 (928)
203 KOG0649 WD40 repeat protein [G 99.1 1.7E-08 3.7E-13 97.4 19.0 248 262-570 16-273 (325)
204 KOG2394 WD40 protein DMR-N9 [G 99.0 1.6E-08 3.4E-13 107.9 19.9 269 24-342 126-457 (636)
205 KOG0290 Conserved WD40 repeat- 99.0 6.3E-09 1.4E-13 102.9 15.7 183 255-482 94-319 (364)
206 KOG1445 Tumor-specific antigen 99.0 8.8E-09 1.9E-13 111.2 18.0 118 205-340 624-753 (1012)
207 KOG1007 WD repeat protein TSSC 99.0 1.2E-08 2.5E-13 100.9 17.3 207 255-482 61-290 (370)
208 PRK03629 tolB translocation pr 99.0 3.2E-08 7E-13 111.4 23.5 233 40-360 179-427 (429)
209 KOG0644 Uncharacterized conser 99.0 3.3E-10 7.1E-15 125.8 6.8 217 252-483 185-428 (1113)
210 KOG1523 Actin-related protein 99.0 1.7E-08 3.8E-13 101.3 17.8 233 257-511 11-264 (361)
211 KOG0322 G-protein beta subunit 99.0 9.8E-09 2.1E-13 100.3 15.5 227 226-480 22-322 (323)
212 PF08662 eIF2A: Eukaryotic tra 99.0 1.7E-08 3.7E-13 100.3 17.7 116 208-342 59-184 (194)
213 KOG2111 Uncharacterized conser 99.0 4.6E-07 9.9E-12 91.3 27.4 94 260-362 139-238 (346)
214 KOG0642 Cell-cycle nuclear pro 99.0 5.1E-09 1.1E-13 112.4 14.3 255 25-344 300-568 (577)
215 KOG2139 WD40 repeat protein [G 99.0 1.2E-07 2.5E-12 96.8 22.8 217 209-475 141-368 (445)
216 KOG4497 Uncharacterized conser 99.0 2.2E-07 4.7E-12 93.6 24.5 287 221-528 11-390 (447)
217 KOG4227 WD40 repeat protein [G 99.0 3.7E-08 7.9E-13 100.9 19.3 218 258-486 150-392 (609)
218 KOG2321 WD40 repeat protein [G 99.0 7.5E-08 1.6E-12 103.5 22.1 168 258-488 176-354 (703)
219 PF08662 eIF2A: Eukaryotic tra 99.0 4.4E-08 9.5E-13 97.4 19.1 98 257-373 59-162 (194)
220 KOG0290 Conserved WD40 repeat- 98.9 8.1E-09 1.8E-13 102.2 12.1 209 64-338 93-319 (364)
221 PRK05137 tolB translocation pr 98.9 2.4E-07 5.2E-12 104.9 25.3 198 253-487 197-418 (435)
222 KOG1310 WD40 repeat protein [G 98.9 1.1E-08 2.3E-13 109.1 12.6 160 306-480 49-230 (758)
223 KOG1523 Actin-related protein 98.9 7.9E-08 1.7E-12 96.7 17.7 163 134-339 12-178 (361)
224 PRK04922 tolB translocation pr 98.9 1.4E-07 2.9E-12 106.8 20.8 213 68-360 204-432 (433)
225 PF15492 Nbas_N: Neuroblastoma 98.8 3.9E-07 8.4E-12 91.3 20.6 70 25-98 3-74 (282)
226 KOG1272 WD40-repeat-containing 98.8 4.7E-09 1E-13 110.0 7.2 225 257-528 130-361 (545)
227 PRK02889 tolB translocation pr 98.8 7.4E-07 1.6E-11 100.5 24.1 96 255-362 193-295 (427)
228 KOG1272 WD40-repeat-containing 98.8 1.7E-08 3.7E-13 105.9 9.5 201 64-347 127-333 (545)
229 TIGR02658 TTQ_MADH_Hv methylam 98.8 2.2E-06 4.8E-11 91.9 25.3 255 27-347 53-340 (352)
230 PRK03629 tolB translocation pr 98.8 4.6E-07 9.9E-12 102.2 21.1 207 222-462 202-427 (429)
231 KOG2315 Predicted translation 98.8 3.7E-06 8E-11 90.9 26.1 145 257-419 218-389 (566)
232 PF02239 Cytochrom_D1: Cytochr 98.8 1.7E-06 3.7E-11 94.8 24.3 282 25-389 42-355 (369)
233 PRK04922 tolB translocation pr 98.7 1.6E-06 3.4E-11 98.1 24.4 97 254-362 200-303 (433)
234 PF04762 IKI3: IKI3 family; I 98.7 7.4E-05 1.6E-09 91.0 39.0 217 207-487 74-339 (928)
235 PF02239 Cytochrom_D1: Cytochr 98.7 1.8E-05 3.8E-10 86.9 30.6 282 222-529 40-347 (369)
236 PRK02889 tolB translocation pr 98.7 6.6E-07 1.4E-11 100.9 19.3 151 223-387 200-366 (427)
237 KOG2041 WD40 repeat protein [G 98.7 5.2E-05 1.1E-09 83.9 31.6 218 65-336 12-246 (1189)
238 KOG1912 WD40 repeat protein [G 98.7 1.3E-05 2.9E-10 89.3 27.0 274 262-571 236-551 (1062)
239 PF10282 Lactonase: Lactonase, 98.7 0.00012 2.7E-09 80.0 35.2 271 23-343 40-330 (345)
240 KOG1354 Serine/threonine prote 98.7 1.2E-06 2.6E-11 89.0 17.3 257 68-348 26-313 (433)
241 COG2706 3-carboxymuconate cycl 98.6 0.00012 2.6E-09 75.8 31.5 209 261-529 92-321 (346)
242 KOG1310 WD40 repeat protein [G 98.6 4.3E-07 9.3E-12 97.2 13.3 220 252-484 45-306 (758)
243 PRK05137 tolB translocation pr 98.6 2.5E-06 5.3E-11 96.7 20.6 147 222-384 205-369 (435)
244 KOG4547 WD40 repeat-containing 98.6 1.1E-06 2.3E-11 95.8 16.1 209 76-338 2-221 (541)
245 PRK04792 tolB translocation pr 98.6 5E-06 1.1E-10 94.2 22.0 86 262-360 355-446 (448)
246 KOG1334 WD40 repeat protein [G 98.6 4.7E-07 1E-11 95.8 12.3 154 262-421 287-467 (559)
247 PF10282 Lactonase: Lactonase, 98.5 0.0008 1.7E-08 73.7 37.1 269 40-362 13-303 (345)
248 KOG1354 Serine/threonine prote 98.5 1.1E-05 2.4E-10 82.1 20.2 285 23-339 29-361 (433)
249 KOG2321 WD40 repeat protein [G 98.5 8.8E-06 1.9E-10 88.0 20.0 237 255-529 49-302 (703)
250 KOG0974 WD-repeat protein WDR6 98.5 2E-06 4.3E-11 99.2 15.8 193 73-340 93-291 (967)
251 KOG0974 WD-repeat protein WDR6 98.5 2.1E-06 4.6E-11 99.0 15.8 113 252-380 170-287 (967)
252 PRK01029 tolB translocation pr 98.5 1.7E-05 3.7E-10 89.2 23.0 126 224-361 286-425 (428)
253 COG2706 3-carboxymuconate cycl 98.5 0.00089 1.9E-08 69.6 33.0 251 33-337 6-274 (346)
254 TIGR02800 propeller_TolB tol-p 98.5 1.8E-05 3.9E-10 89.3 23.2 116 254-385 186-314 (417)
255 PRK01029 tolB translocation pr 98.5 1.9E-05 4.1E-10 88.8 22.5 68 262-336 236-310 (428)
256 KOG4547 WD40 repeat-containing 98.5 7.6E-06 1.6E-10 89.2 18.2 123 267-401 69-192 (541)
257 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00063 1.4E-08 73.2 32.5 287 29-389 18-338 (352)
258 TIGR02800 propeller_TolB tol-p 98.4 4.2E-05 9.2E-10 86.3 24.8 207 279-528 171-396 (417)
259 COG4946 Uncharacterized protei 98.4 0.0056 1.2E-07 65.4 39.8 77 254-340 356-434 (668)
260 KOG1334 WD40 repeat protein [G 98.4 5.5E-06 1.2E-10 88.0 14.4 285 22-385 145-470 (559)
261 COG5354 Uncharacterized protei 98.4 0.00015 3.2E-09 77.9 25.0 93 255-362 272-371 (561)
262 PRK00178 tolB translocation pr 98.3 7E-05 1.5E-09 84.9 23.7 96 255-362 196-298 (430)
263 KOG3881 Uncharacterized conser 98.3 2.1E-05 4.5E-10 81.7 16.8 216 29-318 114-342 (412)
264 COG4946 Uncharacterized protei 98.3 0.0013 2.9E-08 70.0 30.0 92 260-362 405-500 (668)
265 PRK04792 tolB translocation pr 98.3 6.2E-05 1.3E-09 85.3 21.8 94 257-362 217-317 (448)
266 PF00400 WD40: WD domain, G-be 98.3 1.5E-06 3.2E-11 61.6 5.5 38 290-335 2-39 (39)
267 KOG3881 Uncharacterized conser 98.3 2.3E-05 5E-10 81.3 16.1 134 240-386 173-325 (412)
268 KOG4532 WD40-like repeat conta 98.3 0.0002 4.3E-09 70.9 20.8 179 71-319 71-262 (344)
269 KOG2315 Predicted translation 98.2 9E-05 2E-09 80.5 20.0 118 206-342 268-395 (566)
270 KOG2314 Translation initiation 98.2 0.0006 1.3E-08 74.0 25.0 305 21-373 212-556 (698)
271 PF15492 Nbas_N: Neuroblastoma 98.2 0.00069 1.5E-08 68.4 23.6 233 224-487 3-269 (282)
272 KOG2041 WD40 repeat protein [G 98.2 0.00013 2.9E-09 80.7 19.4 148 205-362 11-168 (1189)
273 PRK00178 tolB translocation pr 98.1 0.00017 3.7E-09 81.7 20.9 146 224-385 204-367 (430)
274 KOG1409 Uncharacterized conser 98.1 7.7E-05 1.7E-09 76.3 13.8 79 254-340 194-273 (404)
275 KOG3914 WD repeat protein WDR4 98.0 7E-05 1.5E-09 78.3 13.8 85 253-346 147-232 (390)
276 KOG0309 Conserved WD40 repeat- 98.0 5E-05 1.1E-09 84.5 13.3 96 254-359 111-210 (1081)
277 PRK04043 tolB translocation pr 98.0 0.00061 1.3E-08 76.3 21.3 68 262-340 324-403 (419)
278 KOG0280 Uncharacterized conser 98.0 0.00041 8.8E-09 69.8 17.0 114 212-338 125-242 (339)
279 PLN02919 haloacid dehalogenase 98.0 0.0025 5.3E-08 79.5 28.0 116 224-341 745-892 (1057)
280 KOG4190 Uncharacterized conser 98.0 1.6E-05 3.4E-10 85.3 7.5 175 254-484 732-909 (1034)
281 KOG2314 Translation initiation 98.0 0.00071 1.5E-08 73.4 19.8 119 207-341 444-577 (698)
282 PF06433 Me-amine-dh_H: Methyl 98.0 0.0033 7.1E-08 66.2 24.3 259 25-349 41-332 (342)
283 KOG0309 Conserved WD40 repeat- 97.9 2E-05 4.3E-10 87.5 7.9 200 205-421 111-340 (1081)
284 KOG1064 RAVE (regulator of V-A 97.9 5.2E-05 1.1E-09 92.0 11.2 189 132-390 2208-2407(2439)
285 PF00400 WD40: WD domain, G-be 97.9 3.4E-05 7.4E-10 54.5 5.8 36 444-479 3-39 (39)
286 KOG1064 RAVE (regulator of V-A 97.9 7.1E-05 1.5E-09 90.9 11.2 182 261-482 2213-2399(2439)
287 KOG1912 WD40 repeat protein [G 97.9 0.0017 3.7E-08 73.2 21.1 61 33-100 81-146 (1062)
288 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0066 1.4E-07 67.8 26.2 67 22-97 31-109 (410)
289 KOG1409 Uncharacterized conser 97.8 0.00062 1.3E-08 69.9 15.1 225 225-484 31-273 (404)
290 PRK04043 tolB translocation pr 97.7 0.0032 6.9E-08 70.6 21.4 91 260-362 191-288 (419)
291 KOG0280 Uncharacterized conser 97.7 0.0011 2.3E-08 66.9 14.9 100 231-340 179-287 (339)
292 PF07433 DUF1513: Protein of u 97.7 0.013 2.8E-07 61.1 22.8 61 262-332 56-121 (305)
293 PF11768 DUF3312: Protein of u 97.7 0.00071 1.5E-08 74.8 14.1 76 257-343 260-335 (545)
294 TIGR03300 assembly_YfgL outer 97.6 0.011 2.4E-07 65.6 23.8 141 269-419 191-337 (377)
295 PLN02919 haloacid dehalogenase 97.6 0.014 3E-07 72.9 25.3 212 259-484 626-891 (1057)
296 KOG4640 Anaphase-promoting com 97.5 0.00031 6.7E-09 77.6 8.9 73 261-343 25-98 (665)
297 KOG3621 WD40 repeat-containing 97.5 0.0032 6.8E-08 70.8 16.6 79 257-338 76-155 (726)
298 TIGR03300 assembly_YfgL outer 97.5 0.047 1E-06 60.6 26.5 248 267-568 104-376 (377)
299 PF04841 Vps16_N: Vps16, N-ter 97.5 0.065 1.4E-06 59.9 27.0 70 451-528 215-286 (410)
300 KOG4714 Nucleoporin [Nuclear s 97.5 0.0013 2.7E-08 65.2 11.4 74 259-340 181-257 (319)
301 KOG4532 WD40-like repeat conta 97.5 0.0073 1.6E-07 60.2 16.6 190 267-484 83-285 (344)
302 COG5170 CDC55 Serine/threonine 97.4 0.00066 1.4E-08 68.5 9.5 264 64-348 23-321 (460)
303 KOG4190 Uncharacterized conser 97.4 0.0016 3.4E-08 70.4 12.9 174 128-346 731-915 (1034)
304 KOG3914 WD repeat protein WDR4 97.4 0.0014 3E-08 68.8 11.4 80 305-389 149-231 (390)
305 KOG2066 Vacuolar assembly/sort 97.4 0.0083 1.8E-07 68.4 17.8 146 261-485 44-191 (846)
306 KOG1920 IkappaB kinase complex 97.3 0.085 1.8E-06 63.2 25.3 214 209-487 69-328 (1265)
307 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.11 2.5E-06 56.9 25.5 75 21-97 44-131 (353)
308 KOG4714 Nucleoporin [Nuclear s 97.2 0.00075 1.6E-08 66.8 6.9 152 306-482 88-255 (319)
309 KOG2114 Vacuolar assembly/sort 97.2 0.033 7.1E-07 64.2 20.5 138 258-405 126-268 (933)
310 PF08450 SGL: SMP-30/Gluconola 97.2 0.071 1.5E-06 55.2 22.2 90 262-358 139-232 (246)
311 KOG1645 RING-finger-containing 97.2 0.028 6E-07 59.3 17.8 75 254-338 190-267 (463)
312 COG5354 Uncharacterized protei 97.1 0.14 3.1E-06 55.7 23.1 127 224-362 38-185 (561)
313 KOG2695 WD40 repeat protein [G 97.1 0.0019 4.1E-08 66.4 8.3 116 262-390 258-385 (425)
314 PF04053 Coatomer_WDAD: Coatom 97.0 0.29 6.2E-06 55.0 25.2 63 259-337 35-97 (443)
315 PF07433 DUF1513: Protein of u 96.9 0.28 6.1E-06 51.4 22.2 57 261-330 221-278 (305)
316 COG5170 CDC55 Serine/threonine 96.9 0.033 7.1E-07 56.6 14.7 280 24-336 31-366 (460)
317 smart00320 WD40 WD40 repeats. 96.7 0.0042 9.1E-08 42.1 5.5 30 306-335 11-40 (40)
318 KOG1920 IkappaB kinase complex 96.7 1.1 2.5E-05 54.1 27.6 54 307-362 68-121 (1265)
319 KOG4640 Anaphase-promoting com 96.7 0.007 1.5E-07 67.3 9.1 92 210-317 22-115 (665)
320 PF06433 Me-amine-dh_H: Methyl 96.6 0.73 1.6E-05 49.0 22.9 280 40-391 17-330 (342)
321 KOG2114 Vacuolar assembly/sort 96.5 0.25 5.5E-06 57.3 20.3 121 210-346 127-252 (933)
322 PRK11138 outer membrane biogen 96.4 1 2.2E-05 50.4 24.8 114 224-345 164-282 (394)
323 PF11768 DUF3312: Protein of u 96.4 0.023 5E-07 63.2 11.1 72 22-102 262-334 (545)
324 KOG2066 Vacuolar assembly/sort 96.3 0.13 2.9E-06 59.0 16.3 109 265-389 80-195 (846)
325 PF00930 DPPIV_N: Dipeptidyl p 96.2 0.37 8E-06 52.9 19.6 222 277-529 22-268 (353)
326 KOG0882 Cyclophilin-related pe 96.2 0.035 7.5E-07 59.4 10.5 202 228-486 18-236 (558)
327 KOG1832 HIV-1 Vpr-binding prot 96.2 0.0066 1.4E-07 69.5 5.3 56 306-362 1100-1155(1516)
328 KOG2695 WD40 repeat protein [G 96.1 0.014 3.1E-07 60.2 7.2 109 230-347 264-386 (425)
329 KOG3617 WD40 and TPR repeat-co 96.1 0.11 2.4E-06 59.7 14.2 68 261-337 64-131 (1416)
330 KOG3621 WD40 repeat-containing 96.0 1.1 2.3E-05 51.2 21.5 104 257-373 33-143 (726)
331 KOG3617 WD40 and TPR repeat-co 96.0 0.036 7.8E-07 63.4 10.1 104 262-381 21-131 (1416)
332 KOG1832 HIV-1 Vpr-binding prot 96.0 0.0069 1.5E-07 69.3 4.4 198 128-391 1097-1301(1516)
333 PF08596 Lgl_C: Lethal giant l 95.9 2.3 4.9E-05 47.2 23.9 93 70-162 4-117 (395)
334 PF08450 SGL: SMP-30/Gluconola 95.9 2.6 5.7E-05 43.4 27.2 217 229-472 11-245 (246)
335 KOG2079 Vacuolar assembly/sort 95.8 0.12 2.7E-06 61.2 13.6 75 267-349 98-172 (1206)
336 KOG1275 PAB-dependent poly(A) 95.6 0.13 2.8E-06 59.8 12.8 175 267-479 146-340 (1118)
337 PF13360 PQQ_2: PQQ-like domai 95.6 1.6 3.4E-05 44.6 20.0 68 267-345 35-102 (238)
338 COG3490 Uncharacterized protei 95.5 0.95 2.1E-05 46.2 16.9 67 263-339 120-191 (366)
339 PRK02888 nitrous-oxide reducta 95.5 0.34 7.4E-06 55.5 15.6 104 224-327 326-451 (635)
340 KOG4441 Proteins containing BT 95.5 0.42 9.1E-06 55.8 16.7 235 265-529 282-546 (571)
341 smart00320 WD40 WD40 repeats. 95.4 0.033 7.1E-07 37.4 4.7 34 446-479 6-40 (40)
342 COG0823 TolB Periplasmic compo 95.4 0.3 6.5E-06 54.6 14.5 65 26-98 199-269 (425)
343 KOG1897 Damage-specific DNA bi 95.2 9.9 0.00022 45.5 34.6 81 67-163 530-616 (1096)
344 KOG1275 PAB-dependent poly(A) 95.1 0.43 9.4E-06 55.7 14.7 157 135-336 180-341 (1118)
345 PRK11138 outer membrane biogen 94.9 7.8 0.00017 43.2 28.0 67 267-346 119-187 (394)
346 PF14783 BBS2_Mid: Ciliary BBS 94.9 0.65 1.4E-05 40.8 11.9 89 231-332 16-109 (111)
347 PF15390 DUF4613: Domain of un 94.8 8.4 0.00018 43.6 23.1 105 32-162 74-186 (671)
348 PF12894 Apc4_WD40: Anaphase-p 94.7 0.082 1.8E-06 38.8 5.2 34 307-340 11-44 (47)
349 PF12894 Apc4_WD40: Anaphase-p 94.6 0.061 1.3E-06 39.5 4.3 29 69-97 13-41 (47)
350 KOG0882 Cyclophilin-related pe 94.4 0.21 4.5E-06 53.7 9.2 127 221-347 99-241 (558)
351 PF13360 PQQ_2: PQQ-like domai 94.4 6.7 0.00015 39.8 22.8 63 276-346 1-63 (238)
352 KOG1008 Uncharacterized conser 94.2 0.017 3.8E-07 64.2 0.9 203 259-529 59-275 (783)
353 COG0823 TolB Periplasmic compo 94.0 0.69 1.5E-05 51.8 13.0 92 226-327 289-389 (425)
354 PF06977 SdiA-regulated: SdiA- 93.7 9.5 0.00021 39.3 21.6 123 211-338 24-148 (248)
355 PF10168 Nup88: Nuclear pore c 93.6 2.4 5.2E-05 50.6 17.2 75 25-99 90-181 (717)
356 PF08596 Lgl_C: Lethal giant l 93.1 17 0.00037 40.4 30.0 82 262-344 7-122 (395)
357 KOG1898 Splicing factor 3b, su 93.0 27 0.00059 42.4 30.5 77 19-100 537-621 (1205)
358 COG3391 Uncharacterized conser 92.3 21 0.00046 39.5 22.5 106 226-342 81-195 (381)
359 PF14783 BBS2_Mid: Ciliary BBS 92.0 1.8 3.8E-05 38.1 9.8 65 259-336 4-70 (111)
360 PRK02888 nitrous-oxide reducta 91.6 5.7 0.00012 45.9 16.0 44 315-362 284-332 (635)
361 PRK13616 lipoprotein LpqB; Pro 91.3 9.2 0.0002 44.8 17.9 88 261-362 354-459 (591)
362 PF10647 Gmad1: Lipoprotein Lp 91.3 12 0.00027 38.7 17.3 95 258-362 25-123 (253)
363 PF08553 VID27: VID27 cytoplas 91.3 1.9 4.1E-05 51.5 12.3 92 233-336 545-646 (794)
364 PF04053 Coatomer_WDAD: Coatom 91.0 17 0.00037 41.0 19.1 123 210-362 34-156 (443)
365 PF03178 CPSF_A: CPSF A subuni 90.9 26 0.00056 37.7 24.3 67 79-163 42-118 (321)
366 KOG2079 Vacuolar assembly/sort 90.6 1.4 3E-05 52.8 10.1 67 259-336 133-202 (1206)
367 KOG3630 Nuclear pore complex, 90.6 3.1 6.7E-05 50.2 12.9 75 454-529 200-282 (1405)
368 KOG2444 WD40 repeat protein [G 90.6 0.69 1.5E-05 45.8 6.5 72 258-338 103-178 (238)
369 PF06977 SdiA-regulated: SdiA- 90.1 25 0.00054 36.2 20.2 210 22-275 24-240 (248)
370 PF02897 Peptidase_S9_N: Proly 89.4 41 0.00088 37.7 22.9 34 310-343 126-164 (414)
371 COG3204 Uncharacterized protei 89.3 30 0.00065 36.0 21.5 166 209-391 86-253 (316)
372 PF15390 DUF4613: Domain of un 88.8 18 0.00038 41.2 16.3 33 450-482 153-187 (671)
373 KOG4649 PQQ (pyrrolo-quinoline 88.7 30 0.00065 35.3 20.3 82 268-360 63-145 (354)
374 PRK13616 lipoprotein LpqB; Pro 88.2 40 0.00087 39.7 19.9 108 209-329 448-560 (591)
375 PF00780 CNH: CNH domain; Int 87.1 41 0.0009 35.0 24.2 61 29-98 5-65 (275)
376 PF02897 Peptidase_S9_N: Proly 87.1 56 0.0012 36.5 31.9 56 262-328 129-190 (414)
377 PF10313 DUF2415: Uncharacteri 87.1 1.8 3.9E-05 30.9 4.9 31 308-338 1-34 (43)
378 PF10168 Nup88: Nuclear pore c 87.0 9 0.0002 45.8 13.9 80 259-339 86-181 (717)
379 KOG2377 Uncharacterized conser 86.8 46 0.001 36.7 17.3 75 450-529 64-140 (657)
380 KOG2280 Vacuolar assembly/sort 86.4 25 0.00054 41.1 16.1 165 134-346 85-255 (829)
381 KOG1897 Damage-specific DNA bi 86.1 90 0.0019 37.9 38.0 78 262-345 589-667 (1096)
382 PF07995 GSDH: Glucose / Sorbo 86.1 55 0.0012 35.5 29.7 61 267-332 270-330 (331)
383 KOG1645 RING-finger-containing 85.9 1.7 3.6E-05 46.5 6.1 59 302-362 188-247 (463)
384 PF11635 Med16: Mediator compl 85.3 55 0.0012 39.9 19.7 70 262-332 265-345 (753)
385 KOG3630 Nuclear pore complex, 84.7 6.8 0.00015 47.5 10.9 103 210-324 157-260 (1405)
386 PF00780 CNH: CNH domain; Int 84.7 54 0.0012 34.1 25.8 62 266-339 5-66 (275)
387 KOG2444 WD40 repeat protein [G 83.9 3 6.5E-05 41.4 6.6 74 267-348 69-143 (238)
388 KOG4659 Uncharacterized conser 83.3 1.1E+02 0.0023 38.5 19.7 24 303-326 657-680 (1899)
389 KOG2280 Vacuolar assembly/sort 83.2 52 0.0011 38.7 16.7 40 256-296 216-255 (829)
390 PF10313 DUF2415: Uncharacteri 82.9 3.8 8.2E-05 29.3 5.0 30 453-482 1-34 (43)
391 KOG2377 Uncharacterized conser 82.5 85 0.0018 34.7 19.7 34 306-339 65-98 (657)
392 PF12657 TFIIIC_delta: Transcr 82.3 4.8 0.00011 39.0 7.5 31 68-98 86-122 (173)
393 COG3391 Uncharacterized conser 82.1 88 0.0019 34.6 22.2 78 260-346 210-292 (381)
394 KOG4649 PQQ (pyrrolo-quinoline 81.3 68 0.0015 32.8 26.5 19 142-160 63-81 (354)
395 PHA02713 hypothetical protein; 80.9 23 0.0005 41.5 13.7 27 463-489 512-541 (557)
396 PF12234 Rav1p_C: RAVE protein 79.8 18 0.00039 42.3 12.0 83 5-96 17-103 (631)
397 PF08553 VID27: VID27 cytoplas 79.8 23 0.00049 42.7 13.0 143 318-481 492-647 (794)
398 PRK10115 protease 2; Provision 79.5 1.5E+02 0.0033 35.7 21.7 66 262-339 132-209 (686)
399 PRK13684 Ycf48-like protein; P 79.4 81 0.0018 34.2 16.6 117 259-389 174-295 (334)
400 PF10647 Gmad1: Lipoprotein Lp 78.4 18 0.00039 37.5 10.7 69 262-336 71-143 (253)
401 COG3386 Gluconolactonase [Carb 78.0 1E+02 0.0022 32.9 18.7 90 262-358 168-262 (307)
402 TIGR03074 PQQ_membr_DH membran 77.9 1.7E+02 0.0038 35.6 21.3 78 268-346 260-353 (764)
403 PF07676 PD40: WD40-like Beta 77.6 3.9 8.5E-05 28.3 3.8 28 67-94 8-38 (39)
404 KOG4441 Proteins containing BT 77.3 1.1E+02 0.0023 36.0 17.7 69 458-528 422-498 (571)
405 PF03178 CPSF_A: CPSF A subuni 76.8 1.1E+02 0.0024 32.8 18.3 177 278-481 2-202 (321)
406 PF14655 RAB3GAP2_N: Rab3 GTPa 76.0 7.5 0.00016 43.1 7.3 94 261-359 6-117 (415)
407 KOG2395 Protein involved in va 75.7 17 0.00037 40.6 9.6 59 268-336 441-499 (644)
408 PF11715 Nup160: Nucleoporin N 75.4 13 0.00027 43.6 9.5 39 307-345 214-256 (547)
409 KOG2395 Protein involved in va 75.2 83 0.0018 35.5 14.6 147 312-480 338-499 (644)
410 TIGR03606 non_repeat_PQQ dehyd 74.3 1.6E+02 0.0035 33.3 26.4 60 25-86 35-103 (454)
411 PHA03098 kelch-like protein; P 73.4 99 0.0021 36.0 16.4 28 463-490 487-520 (534)
412 PF12234 Rav1p_C: RAVE protein 72.9 32 0.00069 40.3 11.5 104 226-337 37-156 (631)
413 PF07995 GSDH: Glucose / Sorbo 72.1 1.4E+02 0.003 32.4 15.9 25 367-391 174-201 (331)
414 COG4590 ABC-type uncharacteriz 71.8 23 0.0005 38.8 9.2 32 68-100 221-252 (733)
415 PF07676 PD40: WD40-like Beta 71.4 11 0.00024 26.0 4.8 24 450-473 6-29 (39)
416 PF05694 SBP56: 56kDa selenium 69.3 1.9E+02 0.0042 32.2 16.4 99 372-483 221-344 (461)
417 TIGR02604 Piru_Ver_Nterm putat 69.2 92 0.002 34.3 14.0 63 261-326 76-142 (367)
418 PF07569 Hira: TUP1-like enhan 68.6 21 0.00046 36.1 8.0 74 264-339 18-97 (219)
419 PF08728 CRT10: CRT10; InterP 68.3 1.9E+02 0.004 34.6 16.4 73 258-336 164-245 (717)
420 COG3386 Gluconolactonase [Carb 68.2 1.7E+02 0.0038 31.2 17.9 26 456-481 216-243 (307)
421 KOG4460 Nuclear pore complex, 67.6 20 0.00042 40.1 7.8 77 25-101 109-202 (741)
422 PLN00033 photosystem II stabil 66.7 1.8E+02 0.0039 32.4 15.4 112 262-389 244-363 (398)
423 TIGR02604 Piru_Ver_Nterm putat 66.6 1.6E+02 0.0035 32.3 15.3 71 257-337 14-99 (367)
424 PF14781 BBS2_N: Ciliary BBSom 66.4 1.1E+02 0.0023 28.2 13.2 111 263-385 5-129 (136)
425 PHA02790 Kelch-like protein; P 66.2 1.7E+02 0.0037 33.6 15.9 27 462-488 445-477 (480)
426 KOG1916 Nuclear protein, conta 66.1 3 6.6E-05 49.0 1.5 72 264-337 191-265 (1283)
427 PF12341 DUF3639: Protein of u 64.4 10 0.00022 24.1 3.0 24 70-95 4-27 (27)
428 PHA02713 hypothetical protein; 62.9 2.4E+02 0.0052 33.0 16.5 55 460-516 460-523 (557)
429 TIGR03606 non_repeat_PQQ dehyd 61.9 1.1E+02 0.0023 34.7 12.6 21 305-327 145-165 (454)
430 COG3490 Uncharacterized protei 61.3 2.1E+02 0.0046 29.9 17.0 31 262-293 285-316 (366)
431 PRK13684 Ycf48-like protein; P 58.1 2.7E+02 0.0059 30.1 22.9 49 437-488 246-295 (334)
432 PF14655 RAB3GAP2_N: Rab3 GTPa 57.9 39 0.00085 37.6 8.2 83 259-346 310-407 (415)
433 PF07569 Hira: TUP1-like enhan 57.7 50 0.0011 33.3 8.5 73 22-97 13-95 (219)
434 cd00216 PQQ_DH Dehydrogenases 56.9 3.5E+02 0.0077 31.0 27.1 71 269-346 111-192 (488)
435 KOG4659 Uncharacterized conser 56.4 5.3E+02 0.012 32.9 18.9 87 71-157 596-688 (1899)
436 KOG4460 Nuclear pore complex, 54.2 65 0.0014 36.2 8.8 80 262-342 109-203 (741)
437 KOG1916 Nuclear protein, conta 53.4 19 0.00042 42.8 5.0 25 224-248 241-265 (1283)
438 KOG4499 Ca2+-binding protein R 51.0 2.8E+02 0.0061 28.1 18.1 93 262-359 163-262 (310)
439 PHA02790 Kelch-like protein; P 51.0 4.3E+02 0.0094 30.2 16.5 64 461-528 405-469 (480)
440 PF14870 PSII_BNR: Photosynthe 49.3 3.6E+02 0.0077 28.8 27.9 119 258-390 145-269 (302)
441 PHA03098 kelch-like protein; P 49.3 2.7E+02 0.0058 32.3 14.1 68 460-528 434-510 (534)
442 COG3204 Uncharacterized protei 47.6 3.6E+02 0.0079 28.4 17.3 128 254-400 82-210 (316)
443 PF12768 Rax2: Cortical protei 46.5 2.2E+02 0.0048 30.0 11.3 54 473-529 16-72 (281)
444 PF13964 Kelch_6: Kelch motif 46.4 24 0.00053 25.8 3.1 31 460-490 8-45 (50)
445 PF14781 BBS2_N: Ciliary BBSom 45.0 2.5E+02 0.0055 25.8 11.8 46 447-493 42-92 (136)
446 KOG4499 Ca2+-binding protein R 44.7 1.1E+02 0.0024 30.8 8.0 46 263-317 218-263 (310)
447 PF01344 Kelch_1: Kelch motif; 44.1 43 0.00093 23.9 4.1 30 459-488 7-43 (47)
448 PF11715 Nup160: Nucleoporin N 44.0 99 0.0021 36.1 9.3 78 219-297 157-258 (547)
449 PF14583 Pectate_lyase22: Olig 43.1 4.9E+02 0.011 28.7 26.3 30 545-574 354-384 (386)
450 COG5290 IkappaB kinase complex 42.8 6.8E+02 0.015 30.2 18.2 70 262-339 252-326 (1243)
451 KOG1008 Uncharacterized conser 42.5 12 0.00025 42.8 1.1 105 228-337 164-275 (783)
452 KOG1983 Tomosyn and related SN 42.3 5.1E+02 0.011 32.8 15.3 26 316-341 243-268 (993)
453 PF14761 HPS3_N: Hermansky-Pud 41.3 1.1E+02 0.0023 30.7 7.4 51 269-328 29-80 (215)
454 cd00216 PQQ_DH Dehydrogenases 40.3 6.2E+02 0.013 29.0 25.5 76 268-347 61-138 (488)
455 TIGR02276 beta_rpt_yvtn 40-res 39.9 76 0.0017 21.8 4.8 30 317-346 1-31 (42)
456 PF13418 Kelch_4: Galactose ox 39.2 39 0.00084 24.5 3.2 28 461-488 10-44 (49)
457 PF10214 Rrn6: RNA polymerase 38.8 8.2E+02 0.018 30.0 17.4 80 261-341 150-236 (765)
458 PF13449 Phytase-like: Esteras 37.8 5.4E+02 0.012 27.6 13.4 64 262-327 90-166 (326)
459 PF14761 HPS3_N: Hermansky-Pud 37.6 4.4E+02 0.0095 26.5 13.1 64 25-95 23-93 (215)
460 PF01731 Arylesterase: Arylest 35.2 70 0.0015 27.0 4.4 29 69-97 55-84 (86)
461 PF14870 PSII_BNR: Photosynthe 35.1 5.8E+02 0.013 27.2 26.3 248 207-487 15-267 (302)
462 KOG1900 Nuclear pore complex, 34.6 4.6E+02 0.0099 33.4 12.7 106 36-162 95-209 (1311)
463 TIGR02608 delta_60_rpt delta-6 33.6 1.4E+02 0.0031 22.7 5.5 47 224-282 6-52 (55)
464 PF11090 DUF2833: Protein of u 33.2 44 0.00095 27.9 2.8 31 457-487 2-32 (86)
465 PF10433 MMS1_N: Mono-function 31.8 8.3E+02 0.018 28.0 14.3 128 440-569 31-181 (504)
466 PF15525 DUF4652: Domain of un 31.0 3.1E+02 0.0066 26.8 8.4 56 474-529 88-148 (200)
467 COG5167 VID27 Protein involved 30.7 1.1E+02 0.0023 34.5 5.9 62 267-338 572-633 (776)
468 PLN00033 photosystem II stabil 30.5 8E+02 0.017 27.3 25.0 147 307-478 238-396 (398)
469 PF07646 Kelch_2: Kelch motif; 30.0 80 0.0017 23.0 3.6 32 457-488 5-45 (49)
470 PF13449 Phytase-like: Esteras 29.7 7.3E+02 0.016 26.6 18.0 26 449-474 143-168 (326)
471 PF05694 SBP56: 56kDa selenium 29.3 8.6E+02 0.019 27.4 14.2 66 260-325 314-391 (461)
472 TIGR01063 gyrA DNA gyrase, A s 29.3 1.2E+03 0.025 28.9 22.8 76 211-287 641-719 (800)
473 TIGR01062 parC_Gneg DNA topois 28.3 1.1E+03 0.025 28.5 17.0 64 74-159 489-553 (735)
474 COG5290 IkappaB kinase complex 27.9 7.8E+02 0.017 29.7 12.3 49 26-76 119-168 (1243)
475 PF05907 DUF866: Eukaryotic pr 26.0 1.6E+02 0.0036 28.0 5.8 49 455-504 105-155 (161)
476 PRK14131 N-acetylneuraminic ac 25.9 9E+02 0.02 26.5 18.9 54 460-514 276-352 (376)
477 KOG1983 Tomosyn and related SN 25.5 1E+03 0.022 30.1 14.1 41 447-487 229-270 (993)
478 PF10395 Utp8: Utp8 family; I 25.5 1.2E+03 0.026 27.8 17.6 30 453-482 130-160 (670)
479 PF01436 NHL: NHL repeat; Int 25.4 1.5E+02 0.0032 18.8 3.8 24 71-94 5-28 (28)
480 PF02333 Phytase: Phytase; In 25.3 9.5E+02 0.021 26.5 18.0 207 76-338 65-291 (381)
481 PRK10115 protease 2; Provision 24.6 1.3E+03 0.028 27.8 26.0 105 224-336 132-254 (686)
482 PLN02153 epithiospecifier prot 24.3 9.1E+02 0.02 25.9 12.9 31 460-490 134-176 (341)
483 KOG1896 mRNA cleavage and poly 24.1 1.6E+03 0.034 28.7 19.3 33 1-38 939-972 (1366)
484 KOG2006 WD40 repeat protein [G 23.8 1.6E+02 0.0034 36.2 6.2 31 307-338 340-370 (1023)
485 PF10584 Proteasome_A_N: Prote 23.7 14 0.00031 22.5 -1.1 9 26-34 7-15 (23)
486 COG1247 Sortase and related ac 23.2 66 0.0014 30.9 2.6 41 720-763 50-91 (169)
487 KOG0081 GTPase Rab27, small G 22.1 88 0.0019 29.4 3.0 32 772-804 142-183 (219)
488 PF05096 Glu_cyclase_2: Glutam 22.0 9.1E+02 0.02 25.1 13.8 108 224-346 50-166 (264)
489 PRK13613 lipoprotein LpqB; Pro 20.8 5.4E+02 0.012 30.4 9.9 74 23-99 458-539 (599)
490 PRK05560 DNA gyrase subunit A; 20.7 1.6E+03 0.035 27.6 20.6 221 77-336 496-720 (805)
491 PF11134 Phage_stabilise: Phag 20.1 1.3E+03 0.027 26.0 15.3 62 257-323 89-150 (469)
No 1
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-60 Score=534.32 Aligned_cols=562 Identities=31% Similarity=0.448 Sum_probs=421.8
Q ss_pred eCCcEEEEeeccCccccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCC
Q 003356 228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (827)
Q Consensus 228 ~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~ 307 (827)
.||+......+....+.-....... .--++++|++++..+.++|+|...|.+.+|+...-........... ++++
T Consensus 121 sD~q~a~~~~n~~~~~~t~~i~~~~-~l~~DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~----~~~t 195 (1023)
T KOG2006|consen 121 SDGQAAQLLLNHQGFKYTESIGAWK-PLGGDAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDD----DTLT 195 (1023)
T ss_pred ccchhhhhhcccccchhhhhhhhhc-cccccceeeeccchhhhheecccccceeehhhhhhccceeeecccC----cccc
Confidence 7777655544443322222222211 2347899999999999999999999999999876222222211111 2255
Q ss_pred CCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEE
Q 003356 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYA 387 (827)
Q Consensus 308 ~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~ 387 (827)
-++..+.|.|+++.+|.++..|...+|+..++..+.+..........+..|+|......+.-.++.....|...+..++.
T Consensus 196 i~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~~~ms~v~~~~~ts~~~~~f~~~~~l~e~~~~s~~~~~q~~e~~~~L~~ 275 (1023)
T KOG2006|consen 196 VPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGNILMLPVKKLELTSKVVLKFNPLIIMKGEPTFSKVGAIQWEEVGIVLFP 275 (1023)
T ss_pred ccccccCcCCccceeeeeecccceEEecccccccccchhhhhccchhhhccCcceeeecccccCccchhhccceeeeeec
Confidence 58899999999999999999999999999999887766554334455566666554444455556677788887777766
Q ss_pred EecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCC---CCcceEEEeeeceeeccCCCcEEEEEEcCCC
Q 003356 388 IEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED---TDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (827)
Q Consensus 388 ~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d---~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG 464 (827)
........+..+.....+. .+++........++..+++....+ .+...|.++++|.+|...+|||++++.++||
T Consensus 276 ~~~~~~~~~~~~~s~sc~~---~S~~~~~~~~l~~d~~~l~~~~~~~s~~~~~~w~~~~~P~~y~ssnwpiry~s~~~dg 352 (1023)
T KOG2006|consen 276 HGEQILTISDFKVSKSCLV---ESKTIVCRAQLMGDSHDLVSKATDVSITDIEKWDHLALPLTYTSSNWPIRYVSIDYDG 352 (1023)
T ss_pred ccccccchhheeecccccc---cccceeechhhccchhhhhhhhccccccchhhhheeecccccccccCceeEEeecCCc
Confidence 5433222221111111111 122332333344444444444334 4456899999999999999999999999999
Q ss_pred CEEEEEeCCceEEEEcCCCeEEeeCCccceEEEEEEE-EEEeCCEEEEEEEeeCCCcEEEEEeeCC-CCCccceEEEEec
Q 003356 465 MFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKG-LLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSL 542 (827)
Q Consensus 465 ~~lavag~dg~iiwd~~t~~w~~f~~~~~e~~~~v~g-l~W~~~~li~~~~~~~~~~~~lrly~~~-~l~~~~~~~~~~l 542 (827)
+++|+||.-|.++|+..+++||.|+++.||+.+.|+| |.|++++++.||+.+.+..+++++|+++ ++|++. .+....
T Consensus 353 ~~lavAgl~gla~y~~~~~~Wk~f~~~sqEq~i~vtg~liW~~~f~v~~~~~~~~~~~~L~fy~~~~~~dn~~-a~k~~~ 431 (1023)
T KOG2006|consen 353 KHLAVAGLHGLARYSLSSKRWKLFGDESQEQNINVTGGLIWWDDFVVHGCVEEGNRTFELYFYPRDYNLDNNL-AHKSAA 431 (1023)
T ss_pred cEEEEeecccceEEEeecceeecCCccchhhceecceeeEEecceEEEEEEeecCceeeeEecccccccchhh-ccchhh
Confidence 9999999999999999999999999999999999984 9999999999999999999999999998 777754 343333
Q ss_pred CCccEEEEccCCEEEEEEcCceEEEEEEEEecccCCCCCCceEEEEEEEEeeccCCCCCceEEEccCCCccccccCCCCC
Q 003356 543 LAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVS 622 (827)
Q Consensus 543 ~~~~~~l~~~~~~llV~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~ 622 (827)
......+.+.++.++|.++|+.+.+|.+..+. ...+.+.-+.+++++.+++||+||++++.+.++..-.. ..+
T Consensus 432 ~~~~~d~v~~~~~livitad~~~~~~~~~~~s------~t~l~~~~~~~~~~~~i~thP~~ivs~t~t~~~l~~i~-~~~ 504 (1023)
T KOG2006|consen 432 SAKVSDLVCVDYSLIVITADGKYQHWELWRNS------QTQLDLENVTEVSIVLINTHPACIVSLTVTSPSLANIG-NDN 504 (1023)
T ss_pred hhhhhheeeecceeEEEEecceEEEEEeccch------hhccccceeeEEEEEeecCCCcEEEEeeccCccccccC-ccc
Confidence 34444556788888889999988888776322 35678888999999999999999999999988632111 123
Q ss_pred CCccccccCCceEEEEEECCEEEEEecCC-------CceeEeccceeEEEEcCCCCccccCccceeeEEEECCCC-----
Q 003356 623 TSSDMLAREPARCLILRANGELSLLDLDD-------GRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRG----- 690 (827)
Q Consensus 623 ~~~~~~~~~~~~~~l~~~~g~l~~l~~~~-------~~~~~la~~VE~~~~~~~~~~~~~~~~~~~~~~~~~~~g----- 690 (827)
|.++ +++....+|++.++.... ..+..+|.+||.+|+.+.. +...+.+..|+.||..|
T Consensus 505 l~~~-------~~~~~~~~n~i~~l~~~~~~~~~~~~~~~~la~~Ve~~~~~ss~---~~~~~~d~~Wl~~g~~~~~~~~ 574 (1023)
T KOG2006|consen 505 LQFY-------KSITVTFNNLIGRLIINSSLRDGALYQENKLASLVENFWLNSSF---EDQQVLDLHWLGDGANGCHMKN 574 (1023)
T ss_pred hhHh-------hhhhhhhcchhheeehhhhccchhhhhhhhhhhhHHHeecCcHH---hhhhhhhceeeccCCCcccccc
Confidence 4443 234445566666665432 2578899999999987322 23345688899999999
Q ss_pred cEEecCC--------------CCCCCCCcccccccCcccccccccccceeecCccEEEEEeeeeeecc-----cccccee
Q 003356 691 MQVWYPS--------------PGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSA-----CTEFPCF 751 (827)
Q Consensus 691 ~~vw~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~YPl~v~~~~~~~~g~~~~~~~~~-----~~~~~~~ 751 (827)
|+.|.+. .+.++.+.++|+++++|++|++++|||.+++++++++|++|+..+.. +..+++.
T Consensus 575 ~~g~~~~l~~~~~~~~g~~~~~~~~~~~~~sF~~k~~ml~f~l~~Ypl~~l~~~~~~~gv~~~~~l~asa~~~~~~~~f~ 654 (1023)
T KOG2006|consen 575 MDGCPNHLCLALWLSEGNVWDLVMDAYRVPSFLSKRIMLPFTLNIYPLVLLKNVNLVLGVEQEDALLASAEIILFTLTFD 654 (1023)
T ss_pred ccCCccccccceeecccchhhcccccccCchhhhhccccccchhhceeeeecccceeeeccchhhhhhhccccccccchH
Confidence 7766553 33457778999999999999999999999999999999999976643 3355666
Q ss_pred eecCcccchHHHHHH--HHHHcCCHHHHHHHHHHcCCCCCchhHHHHHhhhhhhcccccCCCCCCC
Q 003356 752 EPTPQAQTILHCLLR--HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRYLTLHKP 815 (827)
Q Consensus 752 ~~~~~~~~~L~~ilr--~~l~~~~~~~a~~~a~~~~~l~~f~h~LE~Llh~vle~e~~~~~~~~~~ 815 (827)
-..++|++|||.|++ |+|+||++++||.+|+.|+.+|||+|+||+|||.|||+|||+++|||||
T Consensus 655 v~~~~h~~~l~~i~~l~q~lkrnl~~~aLllaq~~a~~p~f~h~le~ll~~Vle~e~ts~~p~~d~ 720 (1023)
T KOG2006|consen 655 VQERLHQIYLHIILHLYQLLKRNLGEDALLLAQECAILPHFTHALELLLHFVLEEEATSSEPIPDK 720 (1023)
T ss_pred HhhhhhhhHHHHHHHHHHHHHhhccHHHHHhHHHHHhcccchHHHHHHHHHHHHHhhcCCCCccch
Confidence 667899999999999 9999999999999999999999999999999999999999999999999
No 2
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=305.70 Aligned_cols=408 Identities=18% Similarity=0.218 Sum_probs=286.9
Q ss_pred ceEEEEEecceEEEEEccCeEEEeecCCcee-EEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~~~~v~IW~~~~~~~-~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
...|.|||||++||++..+-+.||...+... ....+.+...-+.++..++++.||-|++.|++++.|-..++|.+....
T Consensus 99 v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k 178 (893)
T KOG0291|consen 99 VGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK 178 (893)
T ss_pred cceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc
Confidence 4568999999999999999999999832111 244445544555678889999999999999999999999999997544
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceE-EEe-ecCCCeEEEEecCCcEEEEecCCccC---c----------
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV-SNI-VSDNKHMLLGLSDGSLYSISWKGEFY---G---------- 165 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v-~~~-~~d~~~llv~t~dg~i~~~~w~~~~~---~---------- 165 (827)
.... ..+.++...| .|+ ..+...+++-++||.+..|..+.... .
T Consensus 179 ~~~~---------------------~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d 237 (893)
T KOG0291|consen 179 NLFT---------------------YALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDD 237 (893)
T ss_pred ccce---------------------EeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccc
Confidence 3111 1123333333 333 44556788889999988765551100 0
Q ss_pred -------cee----------ecccCCCCcccceecccCCCCc-cccccCCceeccccCCCcccEEEEEEcCCcceEEEEE
Q 003356 166 -------AFE----------LVHSSNDSSVAALSHHFPSNGL-ASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY 227 (827)
Q Consensus 166 -------~~~----------l~~~p~~~~~i~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s 227 (827)
+.. ..-.-.....+....|..+..+ +..-+++... ....+.-.-|.++..+...-..+.+.
T Consensus 238 ~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~-LyelP~f~lih~LSis~~~I~t~~~N 316 (893)
T KOG0291|consen 238 EEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG-LYELPDFNLIHSLSISDQKILTVSFN 316 (893)
T ss_pred ccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE-EEecCCceEEEEeecccceeeEEEec
Confidence 000 0000000011222222222221 1111111110 00011112223333232223345555
Q ss_pred eCCcEEEEeecc-Cccccceeeccc---eecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCC
Q 003356 228 SNGQLMSCSVSK-KGLKLAEFIKID---KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (827)
Q Consensus 228 ~dG~~~~~~~~~-~~~~~~~~~~~~---~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~ 302 (827)
..|..++.++.. +.+-+|+..... +.++|...+. ++++|||++||+|+.||.|+|||... +-++.++..
T Consensus 317 ~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFte----- 390 (893)
T KOG0291|consen 317 STGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTE----- 390 (893)
T ss_pred ccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC-ceEEEEecc-----
Confidence 667777766654 334455544322 1268888776 99999999999999999999999988 889999988
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc----eeEEE
Q 003356 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQW 378 (827)
Q Consensus 303 ~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~i~~W 378 (827)
|+..|+.+.|+.+|+.+++++-||+|+.||+...+.++|+........++++..|.| +.+..|. .+.+|
T Consensus 391 ---Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG----elV~AG~~d~F~IfvW 463 (893)
T KOG0291|consen 391 ---HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG----ELVCAGAQDSFEIFVW 463 (893)
T ss_pred ---CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC----CEEEeeccceEEEEEE
Confidence 999999999999999999999999999999999999999987645567889999998 7777776 89999
Q ss_pred ccCCceEEEEecCCcceEEE--Eec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcE
Q 003356 379 DEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (827)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I 455 (827)
+..+++++-++.||.++|.. |++ +..++|+|.|.|+++|++...... ...+.+...+
T Consensus 464 S~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~--------------------vEtl~i~sdv 523 (893)
T KOG0291|consen 464 SVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT--------------------VETLEIRSDV 523 (893)
T ss_pred EeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce--------------------eeeEeeccce
Confidence 99999999999999999965 555 889999999999999998776542 1223445578
Q ss_pred EEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 456 QHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 456 ~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
..++|+|||+.||++.-||.+ +||++.+.
T Consensus 524 l~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 524 LAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred eEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 999999999999999999999 99997553
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.3e-36 Score=298.70 Aligned_cols=344 Identities=14% Similarity=0.127 Sum_probs=278.7
Q ss_pred ccCeEEEeecCCceeEEEEEEeChHhhhhc-CcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceee
Q 003356 38 SPCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (827)
Q Consensus 38 ~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~-G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~ 116 (827)
+++.|.|-+-.+.-..+-...|+..++..| +.+.++.|||||+.||+|+.|.++|+||+.+..+...
T Consensus 85 te~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t------------ 152 (480)
T KOG0271|consen 85 TEDVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT------------ 152 (480)
T ss_pred hhheeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee------------
Confidence 455555544312222334456777778766 6688999999999999999999999999986543222
Q ss_pred eEeeEeecccccccccceEEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccc
Q 003356 117 KISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (827)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~ 194 (827)
.+++..-|.|+ ++|++.|+.|+.||.|.+ |+..+.++.-
T Consensus 153 -----------~KgH~~WVlcvawsPDgk~iASG~~dg~I~l--wdpktg~~~g-------------------------- 193 (480)
T KOG0271|consen 153 -----------CKGHKNWVLCVAWSPDGKKIASGSKDGSIRL--WDPKTGQQIG-------------------------- 193 (480)
T ss_pred -----------ecCCccEEEEEEECCCcchhhccccCCeEEE--ecCCCCCccc--------------------------
Confidence 23444445554 789999999999999987 7766554331
Q ss_pred cCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCE
Q 003356 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQI 270 (827)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~l 270 (827)
..+..++..|+.++|.|.- ..|.++.+++++.|+++++|+...+.+. .||+.+|+ +.|-- ..+
T Consensus 194 -------~~l~gH~K~It~Lawep~h-----l~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gl 260 (480)
T KOG0271|consen 194 -------RALRGHKKWITALAWEPLH-----LVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGL 260 (480)
T ss_pred -------ccccCcccceeEEeecccc-----cCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-Cce
Confidence 2345677789999998843 5688899999999999999998876554 78998876 88743 359
Q ss_pred EEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEEC-----------CCCC-------------------
Q 003356 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT-----------PDNS------------------- 320 (827)
Q Consensus 271 la~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~s-----------pDg~------------------- 320 (827)
|++|+.|++|++|+..+ +.+.+.+++ |...|+.++.| |-|.
T Consensus 261 iySgS~DrtIkvw~a~d-G~~~r~lkG--------HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALD-GKLCRELKG--------HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEecCCCceEEEEEccc-hhHHHhhcc--------cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 99999999999999998 899999999 99999999887 2233
Q ss_pred ------EEEEEEcCCcEEEEeccCC-eeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEec
Q 003356 321 ------AFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (827)
Q Consensus 321 ------~Lasg~~Dg~v~vWs~~~~-~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~ 390 (827)
.|++|++|.++.+|+.+.. +.+....+| ..-|+.+.||||+ ..+++++ .+++|+..+++.+.++.
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~----r~IASaSFDkSVkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDG----RYIASASFDKSVKLWDGRTGKFLASFR 406 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCc----cEEEEeecccceeeeeCCCcchhhhhh
Confidence 5999999999999998644 467777777 7789999999999 9999998 89999999999999999
Q ss_pred CCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEE
Q 003356 391 GSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL 467 (827)
Q Consensus 391 ~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~l 467 (827)
+|-+.|+++.+ .+.+++++.|.++++|++....- ...+.+|...|.++.|||||+.+
T Consensus 407 GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl--------------------~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 407 GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL--------------------KQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee--------------------cccCCCCCceEEEEEecCCCcee
Confidence 99999988888 67899999999999999876544 45677899999999999999999
Q ss_pred EEEeCCceE-EEE
Q 003356 468 AVAGLHGLI-LYD 479 (827)
Q Consensus 468 avag~dg~i-iwd 479 (827)
++||+|..+ +|.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 999999998 884
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-33 Score=279.72 Aligned_cols=310 Identities=14% Similarity=0.200 Sum_probs=246.2
Q ss_pred CCceE--EEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEE
Q 003356 20 SSQQI--IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (827)
Q Consensus 20 ~~~~v--v~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v 96 (827)
+.++| ++|||+|+.||++ +|.++++||.. ...++.+.++. ..-+.+++|||||+.||+++.||.|++||.
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~-TeTp~~t~KgH------~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLD-TETPLFTCKGH------KNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccC-CCCcceeecCC------ccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 45666 6799999999999 68899999996 77777776543 355789999999999999999999999998
Q ss_pred EecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEee-------cCCCeEEEEecCCcEEEEecCCccCcceee
Q 003356 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-------SDNKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (827)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~-------~d~~~llv~t~dg~i~~~~w~~~~~~~~~l 169 (827)
.++...- ..+.++...|++++ +...+++.+++||.+++|+.. .....
T Consensus 187 ktg~~~g----------------------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~--~~~~~-- 240 (480)
T KOG0271|consen 187 KTGQQIG----------------------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK--LGTCV-- 240 (480)
T ss_pred CCCCccc----------------------ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc--CceEE--
Confidence 7665211 11233333344432 334578889999999985433 22211
Q ss_pred cccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeec
Q 003356 170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK 249 (827)
Q Consensus 170 ~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~ 249 (827)
..+..+...|+++.|- - ..++.+++.|.++++|+...
T Consensus 241 --------------------------------~~lsgHT~~VTCvrwG----------G-~gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 241 --------------------------------RTLSGHTASVTCVRWG----------G-EGLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred --------------------------------EEeccCccceEEEEEc----------C-CceEEecCCCceEEEEEccc
Confidence 1234556667766532 1 23567788899999999887
Q ss_pred cce---ecCCCCcEE-EEEc-----------CCCC-------------------------EEEEEecCCeEEEEEcCCCC
Q 003356 250 IDK---ELGSGDAVC-ASIA-----------PEQQ-------------------------ILAVGTRRGVVELYDLAESA 289 (827)
Q Consensus 250 ~~~---~~~h~~~v~-va~s-----------p~~~-------------------------lla~g~~dg~v~vw~~~~~~ 289 (827)
+.. +.||...+. ++.| |.++ .+++|+.|+++.+|+-....
T Consensus 278 G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k 357 (480)
T KOG0271|consen 278 GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK 357 (480)
T ss_pred hhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc
Confidence 643 378888887 7665 4444 49999999999999977645
Q ss_pred cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce
Q 003356 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (827)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l 369 (827)
+++....+ |..-|+.+.|||||+++|+++-|+.|++|+-.+|+.+.++++| ...|..++++.|. ..+
T Consensus 358 kpi~rmtg--------Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH-v~~VYqvawsaDs----RLl 424 (480)
T KOG0271|consen 358 KPITRMTG--------HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH-VAAVYQVAWSADS----RLL 424 (480)
T ss_pred cchhhhhc--------hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc-cceeEEEEeccCc----cEE
Confidence 56777777 9999999999999999999999999999999999999999999 7889999999998 899
Q ss_pred eecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeE
Q 003356 370 MSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQ 418 (827)
Q Consensus 370 ~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~ 418 (827)
++|+ ++++|+..+.++..-+.+|.+.|+++++ |+.+++|+.|..+++|.
T Consensus 425 VS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9998 8999999999999999999999988877 88999999999998884
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=278.56 Aligned_cols=276 Identities=14% Similarity=0.121 Sum_probs=225.2
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecC--
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSD-- 141 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d-- 141 (827)
..+++..+.||+||+.||+++-+|.+++|.....+.... +.++...+.++ .|.
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~-----------------------l~gH~~~v~~~~fhP~~~ 230 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQT-----------------------LRGHTSRVGAAVFHPVDS 230 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEE-----------------------EeccccceeeEEEccCCC
Confidence 457788999999999999999999999999864422111 33444444443 333
Q ss_pred CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcc
Q 003356 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (827)
Q Consensus 142 ~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (827)
+..|+.|+.||.+++|..+.+... ..+.++...|..
T Consensus 231 ~~~lat~s~Dgtvklw~~~~e~~l------------------------------------~~l~gH~~RVs~-------- 266 (459)
T KOG0272|consen 231 DLNLATASADGTVKLWKLSQETPL------------------------------------QDLEGHLARVSR-------- 266 (459)
T ss_pred ccceeeeccCCceeeeccCCCcch------------------------------------hhhhcchhhhee--------
Confidence 457999999999999766654211 112233444444
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEe
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
++|.|+|+.+++++-|.+-++||..+.... .||...|. ++|+|||+++++|+.|..-||||+.+ ++++..+.+
T Consensus 267 --VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~g 343 (459)
T KOG0272|consen 267 --VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAG 343 (459)
T ss_pred --eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-CcEEEEecc
Confidence 558999999999999999999999887654 79999998 99999999999999999999999999 999999999
Q ss_pred ecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEE
Q 003356 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQ 377 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~ 377 (827)
|..+|.+|+|||+|+.||+|+.|++++|||+....++.++.+| .+-|+.+.|+|..
T Consensus 344 --------H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH-~nlVS~Vk~~p~~--------------- 399 (459)
T KOG0272|consen 344 --------HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH-SNLVSQVKYSPQE--------------- 399 (459)
T ss_pred --------cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc-cchhhheEecccC---------------
Confidence 9999999999999999999999999999999999999888888 6667777776632
Q ss_pred EccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEE
Q 003356 378 WDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (827)
Q Consensus 378 W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~ 457 (827)
+..++|+++|+++++|.-..... .+++.||...|.+
T Consensus 400 ------------------------g~fL~TasyD~t~kiWs~~~~~~--------------------~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 400 ------------------------GYFLVTASYDNTVKIWSTRTWSP--------------------LKSLAGHEGKVIS 435 (459)
T ss_pred ------------------------CeEEEEcccCcceeeecCCCccc--------------------chhhcCCccceEE
Confidence 45678899999999997433222 5678899999999
Q ss_pred EEEcCCCCEEEEEeCCceE-EEE
Q 003356 458 VAASKDGMFLAVAGLHGLI-LYD 479 (827)
Q Consensus 458 va~SpdG~~lavag~dg~i-iwd 479 (827)
+.+|+||+++++++.|.++ +|.
T Consensus 436 ~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 436 LDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999 995
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=1.5e-29 Score=263.85 Aligned_cols=376 Identities=15% Similarity=0.231 Sum_probs=252.2
Q ss_pred eEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 003356 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (827)
Q Consensus 23 ~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~ 101 (827)
..|.|||||.+||++ +|+++.|||. |.+.+++.+.. +..+.|.+.+++||||++.++++++|.++++||+...+.
T Consensus 194 ~~VRysPDG~~Fat~gsDgki~iyDG-ktge~vg~l~~---~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 194 NCVRYSPDGSRFATAGSDGKIYIYDG-KTGEKVGELED---SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred eeEEECCCCCeEEEecCCccEEEEcC-CCccEEEEecC---CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 558999999999998 6889999999 79999998864 345679999999999999999999999999999987653
Q ss_pred ee-ecCCCCCCCcee---ee----EeeEeeccc------------ccccccceEEEe--ecCCCeEEEEecCCcEEEEec
Q 003356 102 SI-QIGGKQPSGLFF---IK----ISLVLNEQL------------PFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISW 159 (827)
Q Consensus 102 ~~-~~~~~~~~~~~~---~~----~~l~~~~~~------------~~~~~~~~v~~~--~~d~~~llv~t~dg~i~~~~w 159 (827)
.. ...+...+++.+ |. +.+++.+.+ .+.++...|+++ .++++.|+.|+.||.|.. |
T Consensus 270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~--W 347 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS--W 347 (603)
T ss_pred EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEE--E
Confidence 22 222333333322 21 122222222 245777777776 567789999999999865 7
Q ss_pred CCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCC---cccEEEEEEcCCcceEEEEEeCCcEEEEe
Q 003356 160 KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI---SSAIIWLELCLPMRLLFVLYSNGQLMSCS 236 (827)
Q Consensus 160 ~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~~~~~s~dG~~~~~~ 236 (827)
+.......++...+|..+..++..... +++.+..-++....+..... +..+. +...+.. .+++.+||.++++.
T Consensus 348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~-~~~~t~g~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~-~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQIKGMAASES-GELFTIGWDDTLRVISLKDNGYTKSEVV--KLGSQPK-GLAVLSDGGTAVVA 423 (603)
T ss_pred ecCCccccccccccccceEEEEeecCC-CcEEEEecCCeEEEEecccCccccccee--ecCCCce-eEEEcCCCCEEEEE
Confidence 665544444433455555444433322 23333333333333322111 11122 2222223 34555665544444
Q ss_pred eccCccccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEEC
Q 003356 237 VSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT 316 (827)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~s 316 (827)
..+.-+-+-+........---.+.++|++|+++.+|+|+.||.|+||.+.. .......... .|.++|++++||
T Consensus 424 ~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g-~~l~ee~~~~------~h~a~iT~vayS 496 (603)
T KOG0318|consen 424 CISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG-DELKEEAKLL------EHRAAITDVAYS 496 (603)
T ss_pred ecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC-Ccccceeeee------cccCCceEEEEC
Confidence 433221111111111111112345699999999999999999999999987 4433322221 299999999999
Q ss_pred CCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCce-EEEEecCC
Q 003356 317 PDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR-LYAIEEGS 392 (827)
Q Consensus 317 pDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~-l~~~~~~~ 392 (827)
|||.+||+|...+.+-+||+.++.....--..|++.|.+++|+|+. ..+++|+ .+.+|+..... .+..-..|
T Consensus 497 pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n----~~vATGSlDt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 497 PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN----KLVATGSLDTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc----eEEEeccccceEEEEEccChhhheEecccc
Confidence 9999999999999999999998876332223347899999999999 8999998 88999986532 24444568
Q ss_pred cceEEEEec--ceeeeecccCCCeeeeEE
Q 003356 393 SERVLIFSF--GKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 393 ~~~v~~~~~--~~~~~s~~~d~~~~~w~~ 419 (827)
...|..+.+ ...+++.+.|..+++|.+
T Consensus 573 ~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 573 LGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred ccCceeEEEecCceEEeccCcceeEEecc
Confidence 777877777 678899999999999975
No 7
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=99.98 E-value=1.1e-32 Score=280.11 Aligned_cols=132 Identities=37% Similarity=0.584 Sum_probs=117.5
Q ss_pred ceeeEEEECCCCcEEecCCCCC--CCCCcccccccCcccccccccccceeecCccEEEEEeeeeeeccccccceeeecCc
Q 003356 679 EEVSWLDYGYRGMQVWYPSPGV--DPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQ 756 (827)
Q Consensus 679 ~~~~~~~~~~~g~~vw~~~~~~--~~~~~~~~~~~~~~l~~~~~~YPl~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 756 (827)
.+.+|+.||++|||||+|+.+. .+...+.+.++++|++ .|||||+|++++|+++|+++++..+++.+|+++++.++
T Consensus 3 ~~~lW~~~g~~~~~vW~~~~~~~~~~~~~~~~~~~~i~l~--~d~yPlsil~~~gii~Gv~~~~~~~~~~~~~~~~~~~~ 80 (258)
T PF07064_consen 3 RDSLWLFCGAQGMKVWLPVFPVSPASSDSHSFLSKRIMLP--SDFYPLSILSEKGIILGVEQDTSQRRSSSFPFFKFEIK 80 (258)
T ss_pred ccceehhcCcccceeecccccccccccccccccccCccCC--ccccceEEEcCCcEEEEEEEEeeccCCcCccceEeecC
Confidence 3555666666999999999876 3444555655666655 99999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHcCCHHHHHHHHHHcCCCCCchhHHHHHhhhhhhcccccCCCC
Q 003356 757 AQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRYLTL 812 (827)
Q Consensus 757 ~~~~L~~ilr~~l~~~~~~~a~~~a~~~~~l~~f~h~LE~Llh~vle~e~~~~~~~ 812 (827)
+|+|||+||||+|+||++.+|++||+.|++||||+|+||+|||+|||+|++++++.
T Consensus 81 ~~l~L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~ 136 (258)
T PF07064_consen 81 TQLFLHHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDS 136 (258)
T ss_pred ceechHHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999998744
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.6e-27 Score=254.47 Aligned_cols=451 Identities=14% Similarity=0.148 Sum_probs=329.4
Q ss_pred ceEEEEEecceEEEEEccC-eEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIASPC-HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~~~-~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
-..++.||||.+|++..++ +..+-+. ..+..+..+. -.+++-++.|||||+.+|++..+ .+.+|......
T Consensus 58 I~~ialSp~g~lllavdE~g~~~lvs~-~~r~Vlh~f~-------fk~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~ 128 (893)
T KOG0291|consen 58 ITRIALSPDGTLLLAVDERGRALLVSL-LSRSVLHRFN-------FKRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEI 128 (893)
T ss_pred eEEEEeCCCceEEEEEcCCCcEEEEec-ccceeeEEEe-------ecCccceEEECCCCcEEEEEecc-eeEEEecCcch
Confidence 3448899999999988654 4445455 3444444432 13566799999999999999754 79999985432
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcc
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~ 178 (827)
...+. .+.....+.++...++++ +.|...+++|++|-..+++.-++..+...
T Consensus 129 ~~~~~---------------pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~----------- 182 (893)
T KOG0291|consen 129 KNEFN---------------PFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFT----------- 182 (893)
T ss_pred hcccC---------------cceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccce-----------
Confidence 21111 011112234555566666 55667888899999998877665543211
Q ss_pred cceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCcccccee-----------
Q 003356 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF----------- 247 (827)
Q Consensus 179 i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~----------- 247 (827)
..+..++.+|...-|......+..++.||.++++..+..-...+..
T Consensus 183 -----------------------~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~ 239 (893)
T KOG0291|consen 183 -----------------------YALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEE 239 (893)
T ss_pred -----------------------EeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccc
Confidence 2345677778877777777778889999999988876221111110
Q ss_pred --eccc------------e-e-c-CCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCe
Q 003356 248 --IKID------------K-E-L-GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV 310 (827)
Q Consensus 248 --~~~~------------~-~-~-~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V 310 (827)
..++ + + . ...+.++++|++.-.+||+|-.+|...+|++.+ -.+++.++. ...+|
T Consensus 240 ~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSi--------s~~~I 310 (893)
T KOG0291|consen 240 MDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSI--------SDQKI 310 (893)
T ss_pred ccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeec--------cccee
Confidence 0000 0 0 1 113445599999999999999999999999998 888998887 56789
Q ss_pred EEEEECCCCCEEEEEEcC-CcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEE
Q 003356 311 SCIAWTPDNSAFAVGWKS-RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLY 386 (827)
Q Consensus 311 ~~l~~spDg~~Lasg~~D-g~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~ 386 (827)
..++|+..|..||.|+.. |.+-||+.....-+...++| ...+++++++||| +.+++|. ++++|+...+-++
T Consensus 311 ~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH-~~~i~~l~YSpDg----q~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH-SDRITSLAYSPDG----QLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred eEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc-ccceeeEEECCCC----cEEEeccCCCcEEEEeccCceEE
Confidence 999999999999998864 68999999888777777777 7789999999999 9999997 9999999999999
Q ss_pred EEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCC
Q 003356 387 AIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD 463 (827)
Q Consensus 387 ~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Spd 463 (827)
.++..|...|.++.| ++.+++.|.||+++.||+....+ .++.+.|.. -...++|.+|.
T Consensus 386 vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN--------------fRTft~P~p-----~QfscvavD~s 446 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN--------------FRTFTSPEP-----IQFSCVAVDPS 446 (893)
T ss_pred EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce--------------eeeecCCCc-----eeeeEEEEcCC
Confidence 999999999988887 88999999999999999877655 122222321 12467889999
Q ss_pred CCEEEEEeCCceE--EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEe
Q 003356 464 GMFLAVAGLHGLI--LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS 541 (827)
Q Consensus 464 G~~lavag~dg~i--iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~ 541 (827)
|..+..|+.|..- +|+++||+-.-. -..||..+....+.|.++.|+.++++ ..+|+|+.. +......+.+
T Consensus 447 GelV~AG~~d~F~IfvWS~qTGqllDi-LsGHEgPVs~l~f~~~~~~LaS~SWD-----kTVRiW~if--~s~~~vEtl~ 518 (893)
T KOG0291|consen 447 GELVCAGAQDSFEIFVWSVQTGQLLDI-LSGHEGPVSGLSFSPDGSLLASGSWD-----KTVRIWDIF--SSSGTVETLE 518 (893)
T ss_pred CCEEEeeccceEEEEEEEeecCeeeeh-hcCCCCcceeeEEccccCeEEecccc-----ceEEEEEee--ccCceeeeEe
Confidence 9999999999876 999999974321 12345443344688889999988665 578888874 2222345556
Q ss_pred cCCccEEEE--ccCCEEEEEEcCceEEEEEEE
Q 003356 542 LLAKPIVMD--VYEDYILVTYRPFDVHIFHVK 571 (827)
Q Consensus 542 l~~~~~~l~--~~~~~llV~~~~~~i~l~~~~ 571 (827)
+++.++.++ +.++-++|++-||+|.+|+.+
T Consensus 519 i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 519 IRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred eccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 666666555 568999999999999999976
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=257.44 Aligned_cols=265 Identities=14% Similarity=0.160 Sum_probs=224.1
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCC--CCEEEEEecCCeEEEEEcCCCCcceEEE
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPE--QQILAVGTRRGVVELYDLAESASLIRTV 295 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~--~~lla~g~~dg~v~vw~~~~~~~~~~~l 295 (827)
..+.++.|++.+++++-++.+++|+...... +.||...+. +.|+|. +.-+|+|+.||++++|++++ ...+..+
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-e~~l~~l 257 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-ETPLQDL 257 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-Ccchhhh
Confidence 4577999999999999999999999876643 379998776 999997 66899999999999999988 6888888
Q ss_pred EeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--
Q 003356 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (827)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (827)
.+ |...|..++|+|+|++|++++.|.++++||+.++..+...++| ...|.+++|.||| ..+++|+
T Consensus 258 ~g--------H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH-s~~v~~iaf~~DG----SL~~tGGlD 324 (459)
T KOG0272|consen 258 EG--------HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH-SKGVFSIAFQPDG----SLAATGGLD 324 (459)
T ss_pred hc--------chhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc-ccccceeEecCCC----ceeeccCcc
Confidence 88 9999999999999999999999999999999999888878888 6789999999999 8888887
Q ss_pred -eeEEEccCCceEEEEecCCcceEEEEe--c-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeec
Q 003356 374 -SMMQWDEYGYRLYAIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (827)
Q Consensus 374 -~i~~W~~~~~~l~~~~~~~~~~v~~~~--~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~ 449 (827)
..++||..+++.++.+.+|...|+.++ + |-.++|||.|+++++|++..... ..+..
T Consensus 325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~--------------------ly~ip 384 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE--------------------LYTIP 384 (459)
T ss_pred chhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc--------------------ceecc
Confidence 789999999999999999999995554 4 88999999999999999987665 34556
Q ss_pred cCCCcEEEEEEcC-CCCEEEEEeCCceE-EEEcCCCeEEeeCC-ccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEe
Q 003356 450 SQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFY 526 (827)
Q Consensus 450 ~~~~~I~~va~Sp-dG~~lavag~dg~i-iwd~~t~~w~~f~~-~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly 526 (827)
+|..-|..|.|+| .|.+|+++|.|+++ +|+..+ |..... ..||..+...++.-.++.+++++++ ..+++|
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D-----RT~KLW 457 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQAIATSSFD-----RTIKLW 457 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccCCceEEEeccC-----ceeeec
Confidence 8999999999999 69999999999999 999766 444332 2345443344556667778887554 456666
Q ss_pred e
Q 003356 527 P 527 (827)
Q Consensus 527 ~ 527 (827)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 3
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=9.5e-26 Score=235.62 Aligned_cols=455 Identities=14% Similarity=0.161 Sum_probs=290.6
Q ss_pred CceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecC--cEEEEEEEE
Q 003356 21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS--LYLHIFKVQ 97 (827)
Q Consensus 21 ~~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~d--g~l~l~~v~ 97 (827)
...|..|||.|-++|++ ..+.|+||+.. ....+...+-.. + -|++.+++|++||++||+.... ++.++|-.+
T Consensus 61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt-~~~hiLKnef~v--~--aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D 135 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASGDVSGKVRIWDTT-QKEHILKNEFQV--L--AGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD 135 (603)
T ss_pred eeEEEEeCCCceEEeecCCcCcEEEEecc-Ccceeeeeeeee--c--ccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence 34667899999999999 56899999985 333333332221 1 3999999999999999987643 233333333
Q ss_pred ecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEee--cC-CCeEEEEecCCcEEEEecCCccCcceeecccCC
Q 003356 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSN 174 (827)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~--~d-~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~ 174 (827)
+++.. .+ +.++...|.++. +. +.+++.++.|+.+..+ ++. ++.+.
T Consensus 136 SG~Sv--------------------Ge---i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff--eGP---PFKFk---- 183 (603)
T KOG0318|consen 136 SGNSV--------------------GE---ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF--EGP---PFKFK---- 183 (603)
T ss_pred CCCcc--------------------ce---eeccceeEeeeeccCCCceEEEeccCCCeEEEe--eCC---Ceeee----
Confidence 33210 00 233333443332 22 3679999999999875 322 12110
Q ss_pred CCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee-
Q 003356 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE- 253 (827)
Q Consensus 175 ~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~- 253 (827)
.....+...+.++.| +|||..+++.+.|+.+.++|..++++.
T Consensus 184 ---------------------------~s~r~HskFV~~VRy----------sPDG~~Fat~gsDgki~iyDGktge~vg 226 (603)
T KOG0318|consen 184 ---------------------------SSFREHSKFVNCVRY----------SPDGSRFATAGSDGKIYIYDGKTGEKVG 226 (603)
T ss_pred ---------------------------ecccccccceeeEEE----------CCCCCeEEEecCCccEEEEcCCCccEEE
Confidence 112334446777664 555555555555555555666665543
Q ss_pred -----cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc
Q 003356 254 -----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (827)
Q Consensus 254 -----~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~ 327 (827)
.+|.+.+. ++|+||++.+++++.|.+++|||+.+ .++++++..... -...-..+-|. +..|++-+.
T Consensus 227 ~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~~~~~-----v~dqqvG~lWq--kd~lItVSl 298 (603)
T KOG0318|consen 227 ELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWPMGST-----VEDQQVGCLWQ--KDHLITVSL 298 (603)
T ss_pred EecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEeecCCc-----hhceEEEEEEe--CCeEEEEEc
Confidence 47899998 99999999999999999999999998 788887765210 11233455676 568889999
Q ss_pred CCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEe-cCCcceEEEEec--
Q 003356 328 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSERVLIFSF-- 401 (827)
Q Consensus 328 Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~-~~~~~~v~~~~~-- 401 (827)
+|++...+...+....++.+| ...|+++..+|++ ..+.+|+ .+..|+.+.+..-... ++|...|..+..
T Consensus 299 ~G~in~ln~~d~~~~~~i~GH-nK~ITaLtv~~d~----~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGH-NKSITALTVSPDG----KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE 373 (603)
T ss_pred CcEEEEecccCCChhheeccc-ccceeEEEEcCCC----CEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence 999999999988888899998 6789999999999 8899987 8999999887765443 678888987777
Q ss_pred ceeeeecccCCCeeeeEEEEcC---C--------eEEEEecCCC-Ccce-E-EEeeeceee-----ccCCCcEEEEEEcC
Q 003356 402 GKCCLNRGVSGMTYARQVIYGE---D--------RLLVVQSEDT-DELK-I-LHLNLPVSY-----ISQNWPVQHVAASK 462 (827)
Q Consensus 402 ~~~~~s~~~d~~~~~w~~~~~~---~--------~~~~~~~~d~-~~~~-w-~~~~~p~~~-----~~~~~~I~~va~Sp 462 (827)
...+.+.+.|.++++-++.... . ..-+....+. ...+ . ..+.+.+.. ..-.....++|++|
T Consensus 374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence 4688999999999887653321 1 1111111111 1100 0 111111100 00112356899999
Q ss_pred CCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCC--EEEEEEEeeCCCcEEEEEeeCC-CC-CccceE
Q 003356 463 DGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY-HL-DQSSLL 537 (827)
Q Consensus 463 dG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~--~li~~~~~~~~~~~~lrly~~~-~l-~~~~~~ 537 (827)
||..+|+||+||.+ +|.+..+.-+.+.. ..++.-.++.+.+.++ ++.+| +...++-+|++. +. .+....
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-~~~h~a~iT~vaySpd~~yla~~-----Da~rkvv~yd~~s~~~~~~~w~ 527 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGDELKEEAK-LLEHRAAITDVAYSPDGAYLAAG-----DASRKVVLYDVASREVKTNRWA 527 (603)
T ss_pred CCCEEEEecccceEEEEEecCCcccceee-eecccCCceEEEECCCCcEEEEe-----ccCCcEEEEEcccCceecceee
Confidence 99999999999999 99998754332211 1122233667777655 55555 344678899986 22 222222
Q ss_pred EEEecCCccEEEEccCCEEEEEEcC--ceEEEEEEE
Q 003356 538 CRKSLLAKPIVMDVYEDYILVTYRP--FDVHIFHVK 571 (827)
Q Consensus 538 ~~~~l~~~~~~l~~~~~~llV~~~~--~~i~l~~~~ 571 (827)
.+.+.+..++-..+..+|++.. -.+.||.+.
T Consensus 528 ---FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 528 ---FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred ---eeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 1234456666555555554544 455666554
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.1e-27 Score=257.21 Aligned_cols=423 Identities=14% Similarity=0.183 Sum_probs=274.6
Q ss_pred CceE--EEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhc-CcccEEEEcCCccE--EEEEecCcEEEEE
Q 003356 21 SQQI--IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKL--IAVVTSSLYLHIF 94 (827)
Q Consensus 21 ~~~v--v~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~-G~~~~v~wSPDg~~--lav~t~dg~l~l~ 94 (827)
..|+ .+|+|-|.++|++ .++++.|||.. ..-.+.. ++.| |.+-++.|.|+-.+ |+++..|+.+++|
T Consensus 105 e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~-~~~~th~-------fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vw 176 (775)
T KOG0319|consen 105 EAPVITMAFDPTGTLLATGGADGRVKVWDIK-NGYCTHS-------FKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVW 176 (775)
T ss_pred CCCeEEEEEcCCCceEEeccccceEEEEEee-CCEEEEE-------ecCCCceEEEEEeCCccchhheeecCCCceEEEE
Confidence 3455 6899999999998 58999999994 5444443 3344 55666999999876 8999999999999
Q ss_pred EEEecCcee------------ecCCCCCC---------CceeeeEee-EeecccccccccceEEEeecC-----CCeEEE
Q 003356 95 KVQITEKSI------------QIGGKQPS---------GLFFIKISL-VLNEQLPFAEKGLSVSNIVSD-----NKHMLL 147 (827)
Q Consensus 95 ~v~~~~~~~------------~~~~~~~~---------~~~~~~~~l-~~~~~~~~~~~~~~v~~~~~d-----~~~llv 147 (827)
++.....-. .....+.. -..+|.+.- ......+.-..-..+ .+..+ +.++++
T Consensus 177 nl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~v-v~l~~~~~~~~~~~~T 255 (775)
T KOG0319|consen 177 NLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESV-VRLREELGGKGEYIIT 255 (775)
T ss_pred EcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeE-EEechhcCCcceEEEE
Confidence 997444300 00001110 122333200 000000100000011 11122 357888
Q ss_pred EecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCC---------ceeccccCCCcccEEEEEEcC
Q 003356 148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSG---------AFVSDHKFPISSAIIWLELCL 218 (827)
Q Consensus 148 ~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~---------~~~~~~~~~~~~~i~~i~~~~ 218 (827)
++.+|.++. |+.+........-+|-........+....+++....... ......+.+-...|.+|.|-.
T Consensus 256 aG~~g~~~~--~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 256 AGGSGVVQY--WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred ecCCceEEE--EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence 899999988 444432111000011111122222333333322111111 111111222233344443322
Q ss_pred C---------------------c-----------ceEEEEEeCCcEEEEeeccCccccceeecccee-------cCCCCc
Q 003356 219 P---------------------M-----------RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDA 259 (827)
Q Consensus 219 ~---------------------~-----------~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~ 259 (827)
+ + ...+.+..+|-++++++.|.++++|........ .+|...
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence 1 0 112233456667777777777777777332211 567766
Q ss_pred EE-EEEcCC-CCEEEEEecCCeEEEEEcCCCCcceE---EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEE
Q 003356 260 VC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIR---TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (827)
Q Consensus 260 v~-va~sp~-~~lla~g~~dg~v~vw~~~~~~~~~~---~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vW 334 (827)
+. ++++.. ...+++++.|+++++|++.. .+... .+.. -.....|...|+|++.+|+.+++|+|+.|++.++|
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~-s~~~~~~~~~~~--~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW 490 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPK-SKETAFPIVLTC--RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIW 490 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCC-cccccccceehh--hHHHHhhcccccceEecCCCceEEecccccceeee
Confidence 65 777654 35777778888888887765 21111 1100 00112489999999999999999999999999999
Q ss_pred eccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeec
Q 003356 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNR 408 (827)
Q Consensus 335 s~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~ 408 (827)
++..+++..+|.+| ...|.++.|+|.+ +.+++.+ ++++|.+.++.++.++.||...|...+| ++.++|+
T Consensus 491 ~le~~~l~~vLsGH-~RGvw~V~Fs~~d----q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~ 565 (775)
T KOG0319|consen 491 DLEQLRLLGVLSGH-TRGVWCVSFSKND----QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISA 565 (775)
T ss_pred cccCceEEEEeeCC-ccceEEEEecccc----ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEec
Confidence 99999999999999 8899999999998 8888877 9999999999999999999999988888 8999999
Q ss_pred ccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 409 ~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
+.||-+++|++.+++. ..++-+|+..|++++.+|++..+++||.||.+ +|.=.|
T Consensus 566 ~adGliKlWnikt~eC--------------------~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 566 GADGLIKLWNIKTNEC--------------------EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred cCCCcEEEEeccchhh--------------------hhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999999988776 67889999999999999999999999999999 885433
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=8.5e-27 Score=227.42 Aligned_cols=283 Identities=13% Similarity=0.147 Sum_probs=217.6
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeE
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~l 145 (827)
+-+.+.++-|++|+++|++++.||.|.+||.-+.++... +++.....-..+++|.++.+
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~ha---------------------ipl~s~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHA---------------------IPLPSSWVMTCAYSPSGNFV 112 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeE---------------------EecCceeEEEEEECCCCCeE
Confidence 347889999999999999999999999999865543211 11222223345778999999
Q ss_pred EEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEE
Q 003356 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (827)
Q Consensus 146 lv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (827)
++|.-|+...+|+......... ..++..+..+.+++.+..
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~------------------------------~~v~r~l~gHtgylScC~---------- 152 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGN------------------------------VRVSRELAGHTGYLSCCR---------- 152 (343)
T ss_pred EecCcCceeEEEeccccccccc------------------------------ceeeeeecCccceeEEEE----------
Confidence 9999999877776652211100 011123455666665544
Q ss_pred EEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecC
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~ 300 (827)
|..|+ .+++++.|.+.-+||.+++++. .||..-|- ++++| +++.+++|+-|++.++||++. +.+.+++.+
T Consensus 153 f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~g--- 227 (343)
T KOG0286|consen 153 FLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEG--- 227 (343)
T ss_pred EcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeecc---
Confidence 55554 4677888999999999988765 78987776 99999 999999999999999999999 899999999
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecccc-ccceeeeeecCCCCCCccceeecceeEEEc
Q 003356 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGTSMMQWD 379 (827)
Q Consensus 301 ~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~-~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~ 379 (827)
|..-|++++|.|+|..+|+|++|++.|+||+...+.+..+.... ...|++++||..
T Consensus 228 -----hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S------------------ 284 (343)
T KOG0286|consen 228 -----HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS------------------ 284 (343)
T ss_pred -----cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc------------------
Confidence 99999999999999999999999999999998877666554210 112333333333
Q ss_pred cCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEE
Q 003356 380 EYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVA 459 (827)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va 459 (827)
|+.+..|..|.++.+||.+.++. ...+.+|...|.++.
T Consensus 285 ----------------------GRlLfagy~d~~c~vWDtlk~e~--------------------vg~L~GHeNRvScl~ 322 (343)
T KOG0286|consen 285 ----------------------GRLLFAGYDDFTCNVWDTLKGER--------------------VGVLAGHENRVSCLG 322 (343)
T ss_pred ----------------------ccEEEeeecCCceeEeeccccce--------------------EEEeeccCCeeEEEE
Confidence 45566677788888999888766 556779999999999
Q ss_pred EcCCCCEEEEEeCCceE-EEE
Q 003356 460 ASKDGMFLAVAGLHGLI-LYD 479 (827)
Q Consensus 460 ~SpdG~~lavag~dg~i-iwd 479 (827)
.+|||..+++|+.|.++ +|+
T Consensus 323 ~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 323 VSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ECCCCcEEEecchhHheeecC
Confidence 99999999999999999 984
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.4e-25 Score=231.77 Aligned_cols=321 Identities=16% Similarity=0.186 Sum_probs=232.6
Q ss_pred hcCcccEEEEcCCcc-EEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccc----cccceEEEeec
Q 003356 66 REGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFA----EKGLSVSNIVS 140 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~-~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~v~~~~~ 140 (827)
+..+++..+|+|-.. .+|+++.+-+.++|++....... ..+ + .++..+... .....|++++.
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~---~~q--------~--~lrh~~~~~~~s~~~nkdVT~L~W 243 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIG---STQ--------L--VLRHCIREGGKSVPSNKDVTSLDW 243 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhcccc---chh--------h--hhhhhhhhhcccCCccCCcceEEe
Confidence 346788999999988 89999999999999996411100 000 0 011111111 11235666654
Q ss_pred --CCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcC
Q 003356 141 --DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL 218 (827)
Q Consensus 141 --d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 218 (827)
+|..|++|..+|.+++|.-++.... .+..++++|.++.|..
T Consensus 244 n~~G~~LatG~~~G~~riw~~~G~l~~-------------------------------------tl~~HkgPI~slKWnk 286 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNKDGNLIS-------------------------------------TLGQHKGPIFSLKWNK 286 (524)
T ss_pred cCCCCeEEEeecCcEEEEEecCchhhh-------------------------------------hhhccCCceEEEEEcC
Confidence 4788999999999999655544321 2345788999999655
Q ss_pred CcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCc-EEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEE
Q 003356 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA-VCASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (827)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~-v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~ 294 (827)
+|.+++++.-|+++-+||..+++.. ..|+.. +-|.|- +..-+|+.+.||.|+||.+.. .+++.+
T Consensus 287 ----------~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~-~~P~~t 354 (524)
T KOG0273|consen 287 ----------KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGE-DRPVKT 354 (524)
T ss_pred ----------CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe-cCceEeecCCCceEEEEEecC-CCccee
Confidence 4555555555666666776655432 345554 335553 446789999999999999988 889999
Q ss_pred EEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecce
Q 003356 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTS 374 (827)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~ 374 (827)
+.+ |.++|.++.|.|.|.+|+++++|+++++|+.........|..| ...+..+.++|+++-
T Consensus 355 ~~G--------H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H-skei~t~~wsp~g~v---------- 415 (524)
T KOG0273|consen 355 FIG--------HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH-SKEIYTIKWSPTGPV---------- 415 (524)
T ss_pred eec--------ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh-ccceeeEeecCCCCc----------
Confidence 999 9999999999999999999999999999999888888888888 567888888888721
Q ss_pred eEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCc
Q 003356 375 MMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (827)
Q Consensus 375 i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~ 454 (827)
.|++.. +..+++++.|+++++|++..+.. ..++..|..|
T Consensus 416 --~~n~~~-------------------~~~l~sas~dstV~lwdv~~gv~--------------------i~~f~kH~~p 454 (524)
T KOG0273|consen 416 --TSNPNM-------------------NLMLASASFDSTVKLWDVESGVP--------------------IHTLMKHQEP 454 (524)
T ss_pred --cCCCcC-------------------CceEEEeecCCeEEEEEccCCce--------------------eEeeccCCCc
Confidence 222211 33567788999999999877665 5678899999
Q ss_pred EEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEe--CCEEEEE
Q 003356 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVC 512 (827)
Q Consensus 455 I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~ 512 (827)
|.+++|||+|+|+|+|+.||.+ +|++.+++- +.... ..-.|..++|. ++.+.+|
T Consensus 455 VysvafS~~g~ylAsGs~dg~V~iws~~~~~l--~~s~~--~~~~Ifel~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 455 VYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL--VKSYQ--GTGGIFELCWNAAGDKLGAC 511 (524)
T ss_pred eEEEEecCCCcEEEecCCCCeeEeccccchhe--eEeec--CCCeEEEEEEcCCCCEEEEE
Confidence 9999999999999999999999 999999863 31110 11126689996 4455544
No 14
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.2e-24 Score=235.83 Aligned_cols=426 Identities=12% Similarity=0.100 Sum_probs=288.2
Q ss_pred eEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 003356 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (827)
Q Consensus 23 ~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~ 101 (827)
.+++-+||.-+||++ .|+.|+||+.. ....+..+. .+...++.+.|..+|.+||+|+.|+.|.+||+-....
T Consensus 69 t~l~~~~d~l~lAVGYaDGsVqif~~~-s~~~~~tfn------gHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G 141 (888)
T KOG0306|consen 69 TCLRSSDDILLLAVGYADGSVQIFSLE-SEEILITFN------GHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG 141 (888)
T ss_pred EEeeccCCcceEEEEecCceEEeeccC-CCceeeeec------ccccceEEEEEcccCceEeecCCCccEEEEEecccee
Confidence 345556778788988 78999999985 333333321 1234567899999999999999999999999965443
Q ss_pred eeecCCCCC--------------------CCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCC
Q 003356 102 SIQIGGKQP--------------------SGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKG 161 (827)
Q Consensus 102 ~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~ 161 (827)
.+...+|.. .-..+|+++-..-+.. ...+.+.+-+++.+++.+++++.++.+.+|...-
T Consensus 142 l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~T-hvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~ 220 (888)
T KOG0306|consen 142 LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFET-HVDHRGEIWALVLDEKLLVTAGTDSELKVWELAF 220 (888)
T ss_pred eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeE-EecccceEEEEEEecceEEEEecCCceEEEEeec
Confidence 333333321 1134455543222221 1334556777788888888899999888876611
Q ss_pred ccCc----------------------ceeec---------ccC-------------------------------C-----
Q 003356 162 EFYG----------------------AFELV---------HSS-------------------------------N----- 174 (827)
Q Consensus 162 ~~~~----------------------~~~l~---------~~p-------------------------------~----- 174 (827)
+... ...+. ++. .
T Consensus 221 ~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 221 EDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred ccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 1100 00000 000 0
Q ss_pred ---------------------CCcccceecccCCC-Ccc--------c-cccC--------CceeccccCCCcccEEEEE
Q 003356 175 ---------------------DSSVAALSHHFPSN-GLA--------S-VDTS--------GAFVSDHKFPISSAIIWLE 215 (827)
Q Consensus 175 ---------------------~~~~i~~~~~s~~~-~~~--------~-~~~~--------~~~~~~~~~~~~~~i~~i~ 215 (827)
....+.++|..... .+. + +.+. ....++...++...|.+++
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~ 380 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC 380 (888)
T ss_pred cchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE
Confidence 00000111111100 000 0 0000 0000122234444555555
Q ss_pred EcCC-----------------------------cceEEEEEeCCcEEEEeeccCccccceeeccce---ecCCCCcEE-E
Q 003356 216 LCLP-----------------------------MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-A 262 (827)
Q Consensus 216 ~~~~-----------------------------~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-v 262 (827)
++.. .-....|.|.++.++++...|.+.+++...... ...|.++++ +
T Consensus 381 vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi 460 (888)
T KOG0306|consen 381 VSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSI 460 (888)
T ss_pred eecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeee
Confidence 4432 123345566777777777777777777665432 267999999 9
Q ss_pred EEcCCCCEEEEEecCCeEEEEEcCC----CCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 263 SIAPEQQILAVGTRRGVVELYDLAE----SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 263 a~sp~~~lla~g~~dg~v~vw~~~~----~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
+.+||++.+++|+.|.+|++|+..- ++...+.++.++- -.-.-+..|.|+++||||++||+|--|++++||-+.+
T Consensus 461 ~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~-rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt 539 (888)
T KOG0306|consen 461 SLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT-RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT 539 (888)
T ss_pred eecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc-eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc
Confidence 9999999999999999999999742 1111111222100 0001256799999999999999999999999999999
Q ss_pred CeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCC
Q 003356 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSG 412 (827)
Q Consensus 339 ~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~ 412 (827)
-+..-+|.|| .-+|.++..+||+ ..+++|+ ++++|..+=|.+-..+-+|++.|+.+.| ...+.|++.|+
T Consensus 540 lKFflsLYGH-kLPV~smDIS~DS----klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~ 614 (888)
T KOG0306|consen 540 LKFFLSLYGH-KLPVLSMDISPDS----KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG 614 (888)
T ss_pred eeeeeeeccc-ccceeEEeccCCc----CeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcc
Confidence 9999999999 6789999999999 8999998 8999999999999999999999977777 55778999999
Q ss_pred CeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
.++.||-.+-+. .+++.+|...|+++|++|+|.+++++|.|..+ +|....
T Consensus 615 kvKqWDg~kFe~--------------------iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 615 KVKQWDGEKFEE--------------------IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eEEeechhhhhh--------------------heeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999998554443 67888999999999999999999999999999 998643
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=4.5e-25 Score=214.34 Aligned_cols=267 Identities=16% Similarity=0.233 Sum_probs=210.1
Q ss_pred cCCCcccEEEEEEcCCcceEEEEEe-CCcEEEEeeccCccccceeecc--------ceecCCCCcEE-EEEcCCCCEEEE
Q 003356 204 KFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKI--------DKELGSGDAVC-ASIAPEQQILAV 273 (827)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~~~~~~~~~~~~~--------~~~~~h~~~v~-va~sp~~~lla~ 273 (827)
+..+..-|+.+. ..+ +-..++.++.|.++..|+...- +.+.||+..+. ++.++||++..+
T Consensus 11 l~gh~d~Vt~la----------~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 11 LEGHTDWVTALA----------IKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred ecCCCceEEEEE----------eecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence 344555666665 223 3445666666666667765422 23478999999 999999999999
Q ss_pred EecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccce
Q 003356 274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (827)
Q Consensus 274 g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v 353 (827)
++.|+++|+||+.. ++..+.+.+ |+..|.+++||||.+.+++|+.|++|++|++.+.+......+.+.+.|
T Consensus 81 ~swD~~lrlWDl~~-g~~t~~f~G--------H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 81 ASWDGTLRLWDLAT-GESTRRFVG--------HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWV 151 (315)
T ss_pred ccccceEEEEEecC-CcEEEEEEe--------cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcE
Confidence 99999999999998 788889999 999999999999999999999999999999998765544444337899
Q ss_pred eeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceE--EEEec-ceeeeecccCCCeeeeEEEEcCCeEE
Q 003356 354 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLL 427 (827)
Q Consensus 354 ~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~ 427 (827)
++++|+|+.. ...+++++ ++++|+.++.++.....+|...+ +.+++ |..+++|+.|+...+|++.++..
T Consensus 152 scvrfsP~~~--~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--- 226 (315)
T KOG0279|consen 152 SCVRFSPNES--NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--- 226 (315)
T ss_pred EEEEEcCCCC--CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce---
Confidence 9999999841 25677776 99999999999999999998888 66677 88999999999999999988776
Q ss_pred EEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEcCCCeEE------eeCCccceEEEEEEE
Q 003356 428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR------VFGDITQEQKIQSKG 501 (827)
Q Consensus 428 ~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~~t~~w~------~f~~~~~e~~~~v~g 501 (827)
-.++.|+.+|.+++|+|+.-.|+.|...+..|||+++++.- ..++.....+..+..
T Consensus 227 ------------------lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cls 288 (315)
T KOG0279|consen 227 ------------------LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLS 288 (315)
T ss_pred ------------------eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEE
Confidence 23567889999999999999998888888669999998631 112211122334668
Q ss_pred EEEe--CCEEEEE
Q 003356 502 LLWL--GKIIVVC 512 (827)
Q Consensus 502 l~W~--~~~li~~ 512 (827)
++|. +..|.++
T Consensus 289 laws~dG~tLf~g 301 (315)
T KOG0279|consen 289 LAWSADGQTLFAG 301 (315)
T ss_pred EEEcCCCcEEEee
Confidence 9998 5566665
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=2.4e-24 Score=209.24 Aligned_cols=277 Identities=16% Similarity=0.223 Sum_probs=214.6
Q ss_pred ecCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEcCCC----CcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 003356 253 ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (827)
Q Consensus 253 ~~~h~~~v~-va~sp~-~~lla~g~~dg~v~vw~~~~~----~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~ 326 (827)
+.+|.+.|. ++..++ ...+.+++.|.++.+|++... +...+.+.+ |...|..+..++||++.++++
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G--------HsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG--------HSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec--------cceEecceEEccCCceEEecc
Confidence 378999998 888886 678999999999999998752 345677888 999999999999999999999
Q ss_pred cCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCC-cceEEEEec-
Q 003356 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-SERVLIFSF- 401 (827)
Q Consensus 327 ~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~-~~~v~~~~~- 401 (827)
.|+++++||+.+++..+.+.+| ...|.+++|+++. ..+++|+ ++++|+.-+...+....+. .+.|.++.|
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH-~~dVlsva~s~dn----~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGH-TKDVLSVAFSTDN----RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred ccceEEEEEecCCcEEEEEEec-CCceEEEEecCCC----ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence 9999999999999999999999 6789999999998 8999998 8999999877666555544 677855555
Q ss_pred ----ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-
Q 003356 402 ----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (827)
Q Consensus 402 ----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i- 476 (827)
...+++++.|+++++|++.+-+- .+.+.+|++-+..+++||||...|+||+||.+
T Consensus 158 P~~~~p~Ivs~s~DktvKvWnl~~~~l--------------------~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~ 217 (315)
T KOG0279|consen 158 PNESNPIIVSASWDKTVKVWNLRNCQL--------------------RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM 217 (315)
T ss_pred CCCCCcEEEEccCCceEEEEccCCcch--------------------hhccccccccEEEEEECCCCCEEecCCCCceEE
Confidence 23689999999999999866444 67899999999999999999999999999999
Q ss_pred EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeCC-C--CCc---cceEEEEecCCccEEEE
Q 003356 477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-H--LDQ---SSLLCRKSLLAKPIVMD 550 (827)
Q Consensus 477 iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~~-~--l~~---~~~~~~~~l~~~~~~l~ 550 (827)
+||+..++- ++. -+....|..+++.++-+..|...+ ..+++|..+ . .+. ........ ...|..++
T Consensus 218 LwdL~~~k~-lys---l~a~~~v~sl~fspnrywL~~at~----~sIkIwdl~~~~~v~~l~~d~~g~s~~-~~~~~cls 288 (315)
T KOG0279|consen 218 LWDLNEGKN-LYS---LEAFDIVNSLCFSPNRYWLCAATA----TSIKIWDLESKAVVEELKLDGIGPSSK-AGDPICLS 288 (315)
T ss_pred EEEccCCce-eEe---ccCCCeEeeEEecCCceeEeeccC----CceEEEeccchhhhhhccccccccccc-cCCcEEEE
Confidence 999998874 221 122234778999988666553433 348999875 1 111 00000000 11244443
Q ss_pred ----ccCCEEEEEEcCceEEEEEEE
Q 003356 551 ----VYEDYILVTYRPFDVHIFHVK 571 (827)
Q Consensus 551 ----~~~~~llV~~~~~~i~l~~~~ 571 (827)
..+..|+-.++|+-|++|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 346677777888888888764
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=1e-25 Score=247.06 Aligned_cols=242 Identities=17% Similarity=0.222 Sum_probs=199.2
Q ss_pred cCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCe
Q 003356 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGV 279 (827)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~ 279 (827)
+.++.++|.... |+||.+++++++.|.++++|...+..+. .||..+|+ +.|+|.|-++|+|+.|++
T Consensus 447 L~GH~GPVyg~s----------FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 447 LYGHSGPVYGCS----------FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred eecCCCceeeee----------ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCce
Confidence 455666776644 8999999999999999999999877665 79999999 999999999999999999
Q ss_pred EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeec
Q 003356 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (827)
Q Consensus 280 v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~s 359 (827)
-++|..+. ..+.+.+.+ |-+-|.|++|+|+..++|+|+.|.+||+||+.+|..++.+.|| .++|.+++||
T Consensus 517 ArLWs~d~-~~PlRifag--------hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~S 586 (707)
T KOG0263|consen 517 ARLWSTDH-NKPLRIFAG--------HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFS 586 (707)
T ss_pred eeeeeccc-CCchhhhcc--------cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEc
Confidence 99999988 788888888 9999999999999999999999999999999999999999998 8899999999
Q ss_pred CCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEE-----E
Q 003356 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLL-----V 428 (827)
Q Consensus 360 p~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~-----~ 428 (827)
|.| ..+++|. .+++||..+++++..+.+|.+.|..++| +..+++++.|.++++||+.+...... .
T Consensus 587 p~G----r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~ 662 (707)
T KOG0263|consen 587 PCG----RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHIST 662 (707)
T ss_pred CCC----ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccccc
Confidence 999 9999997 8999999999999999999999977776 88999999999999999876544311 1
Q ss_pred EecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEE
Q 003356 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA 470 (827)
Q Consensus 429 ~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lava 470 (827)
+.++...... ....+..+|..-+.||..+.|......+++|
T Consensus 663 ~~~~~~~~~~-~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 663 SNSAITQENN-ASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ccccccccCC-CCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 1111111000 0011223444556688888888776556555
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=1.4e-25 Score=246.09 Aligned_cols=228 Identities=18% Similarity=0.270 Sum_probs=204.6
Q ss_pred ceEEEEEeCCcEEEEeeccCccccceeeccc----------------------------------eecCCCCcEE-EEEc
Q 003356 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----------------------------------KELGSGDAVC-ASIA 265 (827)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~h~~~v~-va~s 265 (827)
..++-|++|++++|.+..+..+++|.....+ .+.||+++|. ++|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 4667788999999999888888888765210 1247999999 9999
Q ss_pred CCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEe
Q 003356 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (827)
Q Consensus 266 p~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl 345 (827)
|+.++|.+++.|++||+|.+++ ..++-..++ |..||+++.|+|-|+++|||+.|++-++|+.......+.+
T Consensus 461 Pd~rfLlScSED~svRLWsl~t-~s~~V~y~G--------H~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKG--------HLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred ccccceeeccCCcceeeeeccc-ceeEEEecC--------CCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence 9999999999999999999998 777777778 9999999999999999999999999999999988888888
Q ss_pred ccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEE--EEec-ceeeeecccCCCeeeeEE
Q 003356 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~--~~~~-~~~~~s~~~d~~~~~w~~ 419 (827)
.+| .+.|.++.|+|+. .++++|+ +++.||..++..+..+.||.+.|. +|++ |+++++|+.|+.+++||+
T Consensus 532 agh-lsDV~cv~FHPNs----~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 532 AGH-LSDVDCVSFHPNS----NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred ccc-ccccceEEECCcc----cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 888 7889999999999 8999998 899999999999999999999995 5555 999999999999999998
Q ss_pred EEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 420 IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 420 ~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
..+.. ...+.+|.+.|.++.||.||..||+||.|..+ +||+..
T Consensus 607 ~~~~~--------------------v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 607 ANGSL--------------------VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCcc--------------------hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 77665 67788999999999999999999999999999 999854
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=5.1e-26 Score=231.03 Aligned_cols=277 Identities=16% Similarity=0.186 Sum_probs=219.4
Q ss_pred cCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecCCCe
Q 003356 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKH 144 (827)
Q Consensus 67 ~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~~ 144 (827)
.-++..|.|.|+|++|.+|+..|.+.+|+.. .+.+......++..|+++ +.++..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~-----------------------~fnFEtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT-----------------------SFNFETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCc-----------------------eeeHHHHhhhhcccceeEEEccCCCE
Confidence 3456789999999999999999999999973 234444456666777776 567788
Q ss_pred EEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEE
Q 003356 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (827)
Q Consensus 145 llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (827)
++.|..+|.|+. |+....... .....+...|++++
T Consensus 153 miSgD~gG~iKy--WqpnmnnVk----------------------------------~~~ahh~eaIRdla--------- 187 (464)
T KOG0284|consen 153 MISGDKGGMIKY--WQPNMNNVK----------------------------------IIQAHHAEAIRDLA--------- 187 (464)
T ss_pred EEEcCCCceEEe--cccchhhhH----------------------------------HhhHhhhhhhheec---------
Confidence 999999999987 665443221 11122345677766
Q ss_pred EEEeCCcEEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecC
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~ 300 (827)
|+|+...++++++|+++++|+...++. +.||.--+. ++|+|...+||+|+.|..|++||-++ ++++.++.+
T Consensus 188 -fSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~--- 262 (464)
T KOG0284|consen 188 -FSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHG--- 262 (464)
T ss_pred -cCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhh---
Confidence 777777888888999999999886643 378886665 99999999999999999999999999 899999998
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEcc
Q 003356 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380 (827)
Q Consensus 301 ~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~ 380 (827)
|+..|..+.|+|+|.+|+++++|..++++|+...+.+.++++| ...|.++.++|-. +
T Consensus 263 -----HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H-kkdv~~~~WhP~~----~------------- 319 (464)
T KOG0284|consen 263 -----HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH-KKDVTSLTWHPLN----E------------- 319 (464)
T ss_pred -----ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc-hhhheeecccccc----c-------------
Confidence 9999999999999999999999999999999987788888888 5667777666654 1
Q ss_pred CCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEE
Q 003356 381 YGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA 460 (827)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~ 460 (827)
..+++|+.|+.+..|.+...+. ++.--.+|...|+++++
T Consensus 320 ----------------------~lftsgg~Dgsvvh~~v~~~~p-------------------~~~i~~AHd~~iwsl~~ 358 (464)
T KOG0284|consen 320 ----------------------SLFTSGGSDGSVVHWVVGLEEP-------------------LGEIPPAHDGEIWSLAY 358 (464)
T ss_pred ----------------------cceeeccCCCceEEEecccccc-------------------ccCCCcccccceeeeec
Confidence 1345788888888888752222 13333478999999999
Q ss_pred cCCCCEEEEEeCCceE-EEEc
Q 003356 461 SKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 461 SpdG~~lavag~dg~i-iwd~ 480 (827)
+|-|..||+|+.|.++ .|..
T Consensus 359 hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 359 HPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cccceeEeecCCCcceeeecc
Confidence 9999999999999999 8864
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.2e-25 Score=232.02 Aligned_cols=357 Identities=14% Similarity=0.128 Sum_probs=263.3
Q ss_pred cccccceEEEeecC--CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccC
Q 003356 128 FAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (827)
Q Consensus 128 ~~~~~~~v~~~~~d--~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~ 205 (827)
+..+..+|.|+... .-.++++..+|.+.+|+.+.+..
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm----------------------------------------- 47 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM----------------------------------------- 47 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee-----------------------------------------
Confidence 44455667776444 45799999999999976654321
Q ss_pred CCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEE
Q 003356 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVE 281 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~ 281 (827)
+.+++.+......+.|-+-.+.++++++|..+++++..+.++. ..|.+-++ ++++|...++.+++.|-+|+
T Consensus 48 -----VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iK 122 (794)
T KOG0276|consen 48 -----VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIK 122 (794)
T ss_pred -----eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEE
Confidence 2222222222333446667778888888888888888777654 67999888 99999999999999999999
Q ss_pred EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecC
Q 003356 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (827)
Q Consensus 282 vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp 360 (827)
+||.+....+.+++.+ |+.-|.+++|.| |.+.+|+++-|++|+||++....+..||.+| ...|+++.+-+
T Consensus 123 lW~we~~wa~~qtfeG--------H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~ 193 (794)
T KOG0276|consen 123 LWDWENEWACEQTFEG--------HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYT 193 (794)
T ss_pred EeeccCceeeeeEEcC--------cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEecc
Confidence 9999986788899999 999999999999 8889999999999999999999999999998 78899999988
Q ss_pred CCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEE--ec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCC
Q 003356 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (827)
Q Consensus 361 ~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~--~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~ 434 (827)
.++ +..+++|. ++++||..+.+++.+++||...|... .+ -..++||+.||++++|...+-..
T Consensus 194 ~gd--kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l---------- 261 (794)
T KOG0276|consen 194 GGD--KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL---------- 261 (794)
T ss_pred CCC--cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh----------
Confidence 762 35788887 99999999999999999999888444 44 55788999999999998543222
Q ss_pred CcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEcCCCeEEeeCCccceEEEEEEE-EEEeCCEEEEEE
Q 003356 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKG-LLWLGKIIVVCN 513 (827)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~~t~~w~~f~~~~~e~~~~v~g-l~W~~~~li~~~ 513 (827)
..++.-.-..+++++-.+.++.+++|.+.|.+.-++ +.+...-.+...| +.|..+.-+.+.
T Consensus 262 ----------E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l--------greeP~vsMd~~gKIiwa~~~ei~~~ 323 (794)
T KOG0276|consen 262 ----------EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL--------GREEPAVSMDSNGKIIWAVHSEIQAV 323 (794)
T ss_pred ----------hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc--------cCCCCceeecCCccEEEEcCceeeee
Confidence 233333445799999999999999999999886665 3333334444444 889877666553
Q ss_pred EeeCCCcE-EEEEeeCCCCCccceEEEEecCCccEEEEccCCEEEEEEcCceEEEEEEE
Q 003356 514 YIDSSNTY-ELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (827)
Q Consensus 514 ~~~~~~~~-~lrly~~~~l~~~~~~~~~~l~~~~~~l~~~~~~llV~~~~~~i~l~~~~ 571 (827)
..+..+.. ++.=-.|-+|.-..+.... +-.+.+..++.+.++.| |.||+.+||.-.
T Consensus 324 ~~ks~~~~~ev~DgErL~LsvKeLgs~e-iyPq~L~hsPNGrfV~V-cgdGEyiIyTal 380 (794)
T KOG0276|consen 324 NLKSVGAQKEVTDGERLPLSVKELGSVE-IYPQTLAHSPNGRFVVV-CGDGEYIIYTAL 380 (794)
T ss_pred eceeccCcccccCCccccchhhhccccc-cchHHhccCCCCcEEEE-ecCccEEEEEee
Confidence 33322222 2211111122222222233 33347888899999888 789999999643
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=2.1e-24 Score=210.72 Aligned_cols=278 Identities=16% Similarity=0.142 Sum_probs=208.5
Q ss_pred cccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecC
Q 003356 202 DHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRR 277 (827)
Q Consensus 202 ~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~d 277 (827)
..++++...|.+|.|++ |++.+++++.|+.+-+||..+..+. +-....|. +||+|.|+++|+|+-|
T Consensus 49 r~LkGH~~Ki~~~~ws~----------Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST----------DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred EEecccccceeeeEecC----------CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC
Confidence 34577888899999554 5555555555555555776655443 22245565 9999999999999999
Q ss_pred CeEEEEEcCCC--C---cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccc
Q 003356 278 GVVELYDLAES--A---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 352 (827)
Q Consensus 278 g~v~vw~~~~~--~---~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~ 352 (827)
+...||++... . ...+.+.+ |++.+.|+.|.+|+ .|++|+.|.+..+||+++++....+.+| ...
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~g--------HtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH-~gD 188 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAG--------HTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGH-TGD 188 (343)
T ss_pred ceeEEEecccccccccceeeeeecC--------ccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCC-ccc
Confidence 99999999852 1 23345666 99999999999965 5778889999999999999999999998 788
Q ss_pred eeeeeecC-CCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCe
Q 003356 353 ISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDR 425 (827)
Q Consensus 353 v~s~~~sp-~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~ 425 (827)
|-++.++| ++ ..+++|. ..++||.+.+++.+++.+|+..|.++.| +..+++|+.|++.+++|+.... .
T Consensus 189 V~slsl~p~~~----ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~-~ 263 (343)
T KOG0286|consen 189 VMSLSLSPSDG----NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ-E 263 (343)
T ss_pred EEEEecCCCCC----CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc-E
Confidence 99999999 55 8888887 8999999999999999999999966666 8899999999999999976543 3
Q ss_pred EEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEE
Q 003356 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW 504 (827)
Q Consensus 426 ~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W 504 (827)
+.+|.. ..-+.+|++++||..|++|..|..|... +||.-.++--. .-..||+.+.+.+ -
T Consensus 264 ~a~ys~-----------------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg-~L~GHeNRvScl~--~ 323 (343)
T KOG0286|consen 264 LAVYSH-----------------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG-VLAGHENRVSCLG--V 323 (343)
T ss_pred Eeeecc-----------------CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE-EeeccCCeeEEEE--E
Confidence 433332 1234589999999999999999999999 99987664211 1123555444444 4
Q ss_pred eCCEEEEEEEeeCCCcEEEEEee
Q 003356 505 LGKIIVVCNYIDSSNTYELLFYP 527 (827)
Q Consensus 505 ~~~~li~~~~~~~~~~~~lrly~ 527 (827)
..+.+.+|.. +-+..||+|.
T Consensus 324 s~DG~av~Tg---SWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATG---SWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEec---chhHheeecC
Confidence 4454444411 2335677773
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=203.49 Aligned_cols=278 Identities=12% Similarity=0.151 Sum_probs=210.8
Q ss_pred ecCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEcCCCCc--ceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC
Q 003356 253 ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (827)
Q Consensus 253 ~~~h~~~v~-va~sp~-~~lla~g~~dg~v~vw~~~~~~~--~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D 328 (827)
+.+|.+.+. +||+|. |.+||+|+.|..||+|+...+.. +...+.. +|+..|++++|+|.|++||+|+-|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-------~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-------GHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-------cchheeeeeeecCCCcEEEEeecc
Confidence 478888888 999998 99999999999999999875222 2222222 499999999999999999999999
Q ss_pred CcEEEEeccCC--eeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccC---CceEEEEecCCcceE--EE
Q 003356 329 RGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERV--LI 398 (827)
Q Consensus 329 g~v~vWs~~~~--~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~---~~~l~~~~~~~~~~v--~~ 398 (827)
.++.||.-.++ +++.+|.+| .+.|.+++|+++| .+|++.+ .+-+|... .+++..++++|.+.| +.
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG----~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~ 157 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGH-ENEVKCVAWSASG----NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI 157 (312)
T ss_pred ceEEEeecCCCceeEEeeeecc-ccceeEEEEcCCC----CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEE
Confidence 99999988755 567889998 7899999999999 9999888 66788764 467889999999888 55
Q ss_pred Eec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-
Q 003356 399 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (827)
Q Consensus 399 ~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i- 476 (827)
+.+ ...++|+|+|.++++|.-..+++ | .+.+++.+|+..|.+++|+++|..|+++++|+++
T Consensus 158 WHPt~dlL~S~SYDnTIk~~~~~~ddd--------------W---~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 158 WHPTEDLLFSCSYDNTIKVYRDEDDDD--------------W---ECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred EcCCcceeEEeccCCeEEEEeecCCCC--------------e---eEEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence 566 67899999999999998654333 3 2456778899999999999999999999999999
Q ss_pred EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeCC-CCCcc--ceEE----EEecCCccEEE
Q 003356 477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQS--SLLC----RKSLLAKPIVM 549 (827)
Q Consensus 477 iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~~-~l~~~--~~~~----~~~l~~~~~~l 549 (827)
+|-..+. ...+++..+..+.|..+.+..+ .++..||+|... ..+.. .++. .++..-..+.-
T Consensus 221 Iw~~~~~-------~~~~~sr~~Y~v~W~~~~IaS~-----ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 221 IWRLYTD-------LSGMHSRALYDVPWDNGVIASG-----GGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred eeeeccC-------cchhcccceEeeeecccceEec-----cCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 9975432 2333555677789995555555 344679999885 22221 1111 11222223444
Q ss_pred Ecc-CCEEEEEEcCceEEEEEEE
Q 003356 550 DVY-EDYILVTYRPFDVHIFHVK 571 (827)
Q Consensus 550 ~~~-~~~llV~~~~~~i~l~~~~ 571 (827)
+.. .+.|+-..+||.+++|.+.
T Consensus 289 ~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCceeecCCCceEEEEEec
Confidence 553 4566667778999999864
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.93 E-value=2.7e-24 Score=222.21 Aligned_cols=316 Identities=15% Similarity=0.200 Sum_probs=220.5
Q ss_pred EEEEecce-EEEEE-ccCeEEEeecCCceeEEE--------EEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEE
Q 003356 25 IYFKVNNG-LLLIA-SPCHIELWSSSQHKVRLG--------KYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIF 94 (827)
Q Consensus 25 v~fspdg~-lla~~-~~~~v~IW~~~~~~~~l~--------~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~ 94 (827)
-+.+|-.. ++|+. .+.+-++|+.. ...-.+ +......+....-.+++++|+-||+.||+|..+|++++|
T Consensus 184 ~~WnP~~~~llasg~~~s~ari~~l~-e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw 262 (524)
T KOG0273|consen 184 CAWNPLRDGLLASGSGDSTARIWNLL-ENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIW 262 (524)
T ss_pred EecCchhhhhhhccCCccceeeeeeh-hhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEE
Confidence 45677766 77877 56788999984 211111 111111223333567999999999999999999999999
Q ss_pred EEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecC--CCeEEEEecCCcEEEEecCCccCcceeeccc
Q 003356 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (827)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d--~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~ 172 (827)
+...... ..+..+.++|.++-.. +++|+.++.||++.+ |+.........
T Consensus 263 ~~~G~l~------------------------~tl~~HkgPI~slKWnk~G~yilS~~vD~ttil--wd~~~g~~~q~--- 313 (524)
T KOG0273|consen 263 NKDGNLI------------------------STLGQHKGPIFSLKWNKKGTYILSGGVDGTTIL--WDAHTGTVKQQ--- 313 (524)
T ss_pred ecCchhh------------------------hhhhccCCceEEEEEcCCCCEEEeccCCccEEE--EeccCceEEEe---
Confidence 9853211 1134455667676544 567999999999877 66433322210
Q ss_pred CCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce
Q 003356 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK 252 (827)
Q Consensus 173 p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~ 252 (827)
+..+...-.+++|-.. ..|+..++||.+.++-....... ..
T Consensus 314 -------------------------------f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~-------~t 354 (524)
T KOG0273|consen 314 -------------------------------FEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPV-------KT 354 (524)
T ss_pred -------------------------------eeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcc-------ee
Confidence 0111111223333322 24566677887777554332211 12
Q ss_pred ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC---------CCEE
Q 003356 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---------NSAF 322 (827)
Q Consensus 253 ~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD---------g~~L 322 (827)
+.+|...|. +.|+|.+.+||+++.|+|+++|+... ......++. |...|..+.|||+ |..|
T Consensus 355 ~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~--------Hskei~t~~wsp~g~v~~n~~~~~~l 425 (524)
T KOG0273|consen 355 FIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQA--------HSKEIYTIKWSPTGPVTSNPNMNLML 425 (524)
T ss_pred eecccCceEEEEECCCCceEEEecCCCeeEeeecCC-Ccchhhhhh--------hccceeeEeecCCCCccCCCcCCceE
Confidence 367888887 99999999999999999999999887 777888888 9999999999996 4689
Q ss_pred EEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecc
Q 003356 323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFG 402 (827)
Q Consensus 323 asg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~ 402 (827)
|+++.|++|++||+..+.++++|..| ..+|.+++|+|++ .+++
T Consensus 426 ~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~~g----~ylA-------------------------------- 468 (524)
T KOG0273|consen 426 ASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSPNG----RYLA-------------------------------- 468 (524)
T ss_pred EEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecCCC----cEEE--------------------------------
Confidence 99999999999999999999999888 6789999999987 5554
Q ss_pred eeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 403 ~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
+|+.|+.+.+|....+.- .+.|.+.+ -|..++|+.+|.+|.++-.||.+ +-|+
T Consensus 469 ----sGs~dg~V~iws~~~~~l--------------------~~s~~~~~-~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 469 ----SGSLDGCVHIWSTKTGKL--------------------VKSYQGTG-GIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----ecCCCCeeEeccccchhe--------------------eEeecCCC-eEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 555555555555433332 33444433 38899999999999999999988 7775
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=4.6e-23 Score=223.77 Aligned_cols=489 Identities=13% Similarity=0.078 Sum_probs=316.7
Q ss_pred ceEEEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
--.++.+||+++|.++. ..-+++|+.. .+ .+.|+-+. .+.+++.-++|+|.|..+|+++.||.+++||+..+.
T Consensus 65 ita~~l~~d~~~L~~a~rs~llrv~~L~-tg----k~irswKa-~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~ 138 (775)
T KOG0319|consen 65 ITALALTPDEEVLVTASRSQLLRVWSLP-TG----KLIRSWKA-IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY 138 (775)
T ss_pred hheeeecCCccEEEEeeccceEEEEEcc-cc----hHhHhHhh-ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE
Confidence 34578999999988885 4569999994 44 23333321 246999999999999999999999999999997432
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCC----CeEEEEecCCcEEEEecCCccCcceeecccCCCC
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN----KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~----~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~ 176 (827)
-. . .+.++.+.|.++...+ ..|++|..|+.++.| +.+.... .+...-.+.
T Consensus 139 ~t---------------------h--~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vw--nl~~~~t-cl~~~~~H~ 192 (775)
T KOG0319|consen 139 CT---------------------H--SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVW--NLNDKRT-CLHTMILHK 192 (775)
T ss_pred EE---------------------E--EecCCCceEEEEEeCCccchhheeecCCCceEEEE--EcccCch-HHHHHHhhh
Confidence 11 1 1344445555543333 346777788988874 4442221 121122233
Q ss_pred cccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeC-----CcEEEEeeccCccccceeeccc
Q 003356 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN-----GQLMSCSVSKKGLKLAEFIKID 251 (827)
Q Consensus 177 ~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~d-----G~~~~~~~~~~~~~~~~~~~~~ 251 (827)
..++.+.++.++....+.+-+.....|...+-....-+.....+ -.+++.++ |..+++.+.++.++.|+...++
T Consensus 193 S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~-E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~ 271 (775)
T KOG0319|consen 193 SAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESL-ESVVRLREELGGKGEYIITAGGSGVVQYWDSESGK 271 (775)
T ss_pred hheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhhe-eeEEEechhcCCcceEEEEecCCceEEEEecccch
Confidence 34555556555432222221122222221111111111111111 23445555 6688888899999999988765
Q ss_pred ee-----cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEE-CCCCCEEEEE
Q 003356 252 KE-----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW-TPDNSAFAVG 325 (827)
Q Consensus 252 ~~-----~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~-spDg~~Lasg 325 (827)
.. ........+..-+..+.++..+.|.++.+||.++ ....+.+-+ ..+.|.+|+| -|+.++||++
T Consensus 272 ~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~-l~i~k~ivG--------~ndEI~Dm~~lG~e~~~laVA 342 (775)
T KOG0319|consen 272 CVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDE-LTIVKQIVG--------YNDEILDMKFLGPEESHLAVA 342 (775)
T ss_pred hhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccc-cEEehhhcC--------CchhheeeeecCCccceEEEE
Confidence 43 1112233344444445556667899999999887 777777777 6778998887 5688999999
Q ss_pred EcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCC----ceEEEEecCCcceEEE
Q 003356 326 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG----YRLYAIEEGSSERVLI 398 (827)
Q Consensus 326 ~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~----~~l~~~~~~~~~~v~~ 398 (827)
...+.+|++++.+..+. -+.+| +..|.++....++ ..+++|+ ++++|..+. .-++....+|...|.+
T Consensus 343 TNs~~lr~y~~~~~~c~-ii~GH-~e~vlSL~~~~~g----~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 343 TNSPELRLYTLPTSYCQ-IIPGH-TEAVLSLDVWSSG----DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred eCCCceEEEecCCCceE-EEeCc-hhheeeeeecccC----cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 99999999999887655 56667 7889988855555 7888888 899996532 2344555688888854
Q ss_pred Eec----ceeeeecccCCCeeeeEEEE-----------------------------cCCeEEEEecCCCCcceEE--Eee
Q 003356 399 FSF----GKCCLNRGVSGMTYARQVIY-----------------------------GEDRLLVVQSEDTDELKIL--HLN 443 (827)
Q Consensus 399 ~~~----~~~~~s~~~d~~~~~w~~~~-----------------------------~~~~~~~~~~~d~~~~~w~--~~~ 443 (827)
+.+ ...++++|.|.++++|++.. .+++++...+.|.....|+ ..+
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~ 496 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR 496 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce
Confidence 444 56789999999999998765 1334444555566667784 445
Q ss_pred eceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeE-EeeCCccceEEEEEEEEEE--eCCEEEEEEEeeCCC
Q 003356 444 LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW-RVFGDITQEQKIQSKGLLW--LGKIIVVCNYIDSSN 519 (827)
Q Consensus 444 ~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w-~~f~~~~~e~~~~v~gl~W--~~~~li~~~~~~~~~ 519 (827)
+..++.||.--|+++.|+|..+.+|+++.|+++ ||++++... |+|.. +.-.|....+ .+..+|+|+.+
T Consensus 497 l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG----H~~aVlra~F~~~~~qliS~~ad---- 568 (775)
T KOG0319|consen 497 LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG----HTSAVLRASFIRNGKQLISAGAD---- 568 (775)
T ss_pred EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC----ccceeEeeeeeeCCcEEEeccCC----
Confidence 667889999999999999999999999999999 999998864 44522 2234555455 46688888444
Q ss_pred cEEEEEeeCCCCCccceEEEEecCCccEEEEc--cCCEEEEEEcCceEEEEE
Q 003356 520 TYELLFYPRYHLDQSSLLCRKSLLAKPIVMDV--YEDYILVTYRPFDVHIFH 569 (827)
Q Consensus 520 ~~~lrly~~~~l~~~~~~~~~~l~~~~~~l~~--~~~~llV~~~~~~i~l~~ 569 (827)
..+++|+...-. -+..-..+...+..++. ..+.++.+.+|+.|.+|+
T Consensus 569 -GliKlWnikt~e--C~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 569 -GLIKLWNIKTNE--CEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred -CcEEEEeccchh--hhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 578999885100 00001112334666664 345455567788888885
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=2.6e-25 Score=225.83 Aligned_cols=266 Identities=14% Similarity=0.207 Sum_probs=222.3
Q ss_pred EEEEEeCCcEEEEeeccCccccceeeccc---eecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEee
Q 003356 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~ 298 (827)
.+..+|+||.+++++..+...+|+..... .+..|.++|+ +.|++++.++++|..+|.|++|+... ..++.++.
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk~~~a- 177 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVKIIQA- 177 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhHHhhH-
Confidence 45688999999999999999999975432 2278999998 99999999999999999999999764 44555555
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---ee
Q 003356 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (827)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i 375 (827)
.|...|++++|||....++++++||+|+|||..-.+....|.+|| -.|.++.|+|.. ..+++|+ .+
T Consensus 178 ------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg-wdVksvdWHP~k----gLiasgskDnlV 246 (464)
T KOG0284|consen 178 ------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG-WDVKSVDWHPTK----GLIASGSKDNLV 246 (464)
T ss_pred ------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC-CCcceeccCCcc----ceeEEccCCcee
Confidence 155899999999999999999999999999998888888889985 469999999987 7888887 89
Q ss_pred EEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCC
Q 003356 376 MQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (827)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~ 452 (827)
++||+.+++++.++.+|+..|+.+.| +..++|+|.|..++++|+....+ ..+|.+|.
T Consensus 247 KlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE--------------------l~~~r~Hk 306 (464)
T KOG0284|consen 247 KLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE--------------------LFTYRGHK 306 (464)
T ss_pred EeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH--------------------HHHhhcch
Confidence 99999999999999999999988877 78999999999999999875555 67889999
Q ss_pred CcEEEEEEcCC-CCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEe--CCEEEEEEEeeCCCcEEEEEeeC
Q 003356 453 WPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPR 528 (827)
Q Consensus 453 ~~I~~va~Spd-G~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~~~~~~~~~~~lrly~~ 528 (827)
..+++++|+|- ...+.+||.||.+ +|.+...+ -.+.....++..|..|.|. ++++..| +++..+|+|.|
T Consensus 307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tg-----snd~t~rfw~r 379 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATG-----SNDRTVRFWTR 379 (464)
T ss_pred hhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEeec-----CCCcceeeecc
Confidence 99999999996 5578889999999 99886322 2233333455568899996 5666554 55678999999
Q ss_pred C
Q 003356 529 Y 529 (827)
Q Consensus 529 ~ 529 (827)
.
T Consensus 380 ~ 380 (464)
T KOG0284|consen 380 N 380 (464)
T ss_pred C
Confidence 7
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.2e-23 Score=219.50 Aligned_cols=265 Identities=14% Similarity=0.148 Sum_probs=204.9
Q ss_pred cCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEE--eecCCCe
Q 003356 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKH 144 (827)
Q Consensus 67 ~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d~~~ 144 (827)
...+.++.|+|-...+..+--+|.|.||+-++..- +.+ ++..+.+|.+ |-...+.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-------------Vks----------feV~~~PvRa~kfiaRknW 69 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-------------VKS----------FEVSEVPVRAAKFIARKNW 69 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEeccccee-------------eee----------eeecccchhhheeeeccce
Confidence 35678999999999999999999999999875431 111 2222333332 3334578
Q ss_pred EEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEE
Q 003356 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (827)
Q Consensus 145 llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (827)
+++|++|..|+++..+..... ..+..+..+|.+++
T Consensus 70 iv~GsDD~~IrVfnynt~ekV------------------------------------~~FeAH~DyIR~ia--------- 104 (794)
T KOG0276|consen 70 IVTGSDDMQIRVFNYNTGEKV------------------------------------KTFEAHSDYIRSIA--------- 104 (794)
T ss_pred EEEecCCceEEEEecccceee------------------------------------EEeeccccceeeee---------
Confidence 999999999999877532111 11233445566655
Q ss_pred EEEeCCcEEEEeeccCccccceeecc----ceecCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCCcceEEEEee
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIKI----DKELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~ 298 (827)
+.|.--.++++++|.++++|+-... +.+.||+.-|. ++||| |.+.+|++|-|+||+||.+.. ..+..++++
T Consensus 105 -vHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~g- 181 (794)
T KOG0276|consen 105 -VHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEG- 181 (794)
T ss_pred -ecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeec-
Confidence 7777778888899999998876532 22379999887 99999 568999999999999999987 677888998
Q ss_pred cCCCCCCCCCCeEEEEECCCC--CEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---
Q 003356 299 DWGYSMDDTGPVSCIAWTPDN--SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (827)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spDg--~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--- 373 (827)
|...|+|+.|-|-| -+|++|++|.+++|||..+..|+.+|.+| +..|+.+.|+|.- ..+++|+
T Consensus 182 -------HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH-t~Nvs~v~fhp~l----piiisgsEDG 249 (794)
T KOG0276|consen 182 -------HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH-TNNVSFVFFHPEL----PIIISGSEDG 249 (794)
T ss_pred -------cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc-cccceEEEecCCC----cEEEEecCCc
Confidence 99999999998854 49999999999999999999999999999 7789999999987 7888987
Q ss_pred eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCe
Q 003356 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMT 414 (827)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~ 414 (827)
++++|...++++..++.-.-+++|++.. ...++.|...+.+
T Consensus 250 TvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 250 TVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred cEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE
Confidence 9999999999988777766778888774 3334444444433
No 27
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1.5e-22 Score=219.67 Aligned_cols=240 Identities=15% Similarity=0.205 Sum_probs=182.9
Q ss_pred CCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEee------------------cCC--------------
Q 003356 255 GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY------------------DWG-------------- 301 (827)
Q Consensus 255 ~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~------------------~~~-------------- 301 (827)
||..-|+ +++|.+..++++|+ ++.+++|+.++ .++++++... +-+
T Consensus 371 GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t-~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E 448 (888)
T KOG0306|consen 371 GHRSDVRSLCVSSDSILLASGA-GESIKIWNRDT-LKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE 448 (888)
T ss_pred cchhheeEEEeecCceeeeecC-CCcEEEEEccC-cceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence 5766777 89999988888876 56899999987 6666654321 111
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC-----Cee--E------EEeccccccceeeeeecCCCCCCccc
Q 003356 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-----CRL--M------STIRQISLSSISSPIVKPNQDCKYEP 368 (827)
Q Consensus 302 ~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~-----~~l--~------~tl~~~~~~~v~s~~~sp~~~~~~~~ 368 (827)
...+|.|.|++++.+||++.+++|+.|.+|++||..- +.. + .+|.- .+.|.++.+|||+ ..
T Consensus 449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel--~ddvL~v~~Spdg----k~ 522 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL--EDDVLCVSVSPDG----KL 522 (888)
T ss_pred hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec--cccEEEEEEcCCC----cE
Confidence 1237999999999999999999999999999998631 111 1 12221 3579999999999 88
Q ss_pred eeecc---eeEEEccCCceEEEEecCCcceEE--EEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEe
Q 003356 369 LMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (827)
Q Consensus 369 l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~--~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~ 442 (827)
++-+- ++.++..++-+.+..+-||.-+|. .+++ ++.++|||.|.++++|-+..|+.
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC------------------ 584 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC------------------ 584 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh------------------
Confidence 87664 899999999999999999999995 4555 89999999999999999988887
Q ss_pred eeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCC-ccceEEEEEEEEEEeCCEEEEEEEeeCCCc
Q 003356 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLGKIIVVCNYIDSSNT 520 (827)
Q Consensus 443 ~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~-~~~e~~~~v~gl~W~~~~li~~~~~~~~~~ 520 (827)
..++.+|...|.++.|-|+...+.++|+||.+ .||-.. .+.+.. ..|..+.-+..+.=.|.++++| +.+
T Consensus 585 --HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~~G~~vvs~-----shD 655 (888)
T KOG0306|consen 585 --HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSPNGSFVVSS-----SHD 655 (888)
T ss_pred --hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh--hhhheeeccchheeeeeEEcCCCCeEEec-----cCC
Confidence 67899999999999999999999999999999 998643 222211 1122222222333356677776 455
Q ss_pred EEEEEeeCC
Q 003356 521 YELLFYPRY 529 (827)
Q Consensus 521 ~~lrly~~~ 529 (827)
+.||+|.+.
T Consensus 656 ~sIRlwE~t 664 (888)
T KOG0306|consen 656 KSIRLWERT 664 (888)
T ss_pred ceeEeeecc
Confidence 889999985
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3e-23 Score=200.82 Aligned_cols=271 Identities=12% Similarity=0.212 Sum_probs=213.2
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee-------cCCCCcEE-EEEcCCCCEEEEEec
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAVC-ASIAPEQQILAVGTR 276 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~-va~sp~~~lla~g~~ 276 (827)
..++..+..++|+|.. |.++++++.|..+++|+...+..+ .+|..+++ +||+|.|++||+|+.
T Consensus 11 ~gh~~r~W~~awhp~~---------g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGK---------GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred cCCCCcEEEEEeccCC---------ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 3445566666654432 778888999999999987743222 47999999 999999999999999
Q ss_pred CCeEEEEEcCCC-CcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC---eeEEEeccccccc
Q 003356 277 RGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSS 352 (827)
Q Consensus 277 dg~v~vw~~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~---~l~~tl~~~~~~~ 352 (827)
|.++.||.-.+. -+++.++.+ |...|+|++||++|++||++++|+.|-||.+..+ .+...|++| +..
T Consensus 82 D~t~~Iw~k~~~efecv~~lEG--------HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqD 152 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEG--------HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQD 152 (312)
T ss_pred cceEEEeecCCCceeEEeeeec--------cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-ccc
Confidence 999999986641 256778888 9999999999999999999999999999999744 356678888 778
Q ss_pred eeeeeecCCCCCCccceeecc---eeEEEccC---CceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcC
Q 003356 353 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGE 423 (827)
Q Consensus 353 v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~---~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~ 423 (827)
|..+.|+|.. ..|++++ ++++|.-. ..++..++.+|...|+++.| +..+++++.|+++++|.....-
T Consensus 153 VK~V~WHPt~----dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~ 228 (312)
T KOG0645|consen 153 VKHVIWHPTE----DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL 228 (312)
T ss_pred ccEEEEcCCc----ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc
Confidence 9999999998 8888887 89999755 46788999999999988877 7789999999999999854221
Q ss_pred CeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC----CeEEeeCCccceEEEE
Q 003356 424 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ----KKWRVFGDITQEQKIQ 498 (827)
Q Consensus 424 ~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t----~~w~~f~~~~~e~~~~ 498 (827)
. .-|.+++..++|. .-.||+||.|+.+ +|.-.. ..|+++....+.++..
T Consensus 229 ~------------------------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d 282 (312)
T KOG0645|consen 229 S------------------------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD 282 (312)
T ss_pred c------------------------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccc
Confidence 1 2467889999998 4479999999999 886654 4677776555555557
Q ss_pred EEEEEEeC---CEEEEEEEeeCCCcEEEEEeeC
Q 003356 499 SKGLLWLG---KIIVVCNYIDSSNTYELLFYPR 528 (827)
Q Consensus 499 v~gl~W~~---~~li~~~~~~~~~~~~lrly~~ 528 (827)
|..++|.. +.|++| . .+..+++|..
T Consensus 283 VNsV~w~p~~~~~L~s~-~----DDG~v~~W~l 310 (312)
T KOG0645|consen 283 VNSVQWNPKVSNRLASG-G----DDGIVNFWEL 310 (312)
T ss_pred cceEEEcCCCCCceeec-C----CCceEEEEEe
Confidence 88899986 345544 2 2367777754
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=201.23 Aligned_cols=225 Identities=16% Similarity=0.203 Sum_probs=182.6
Q ss_pred EEeCCcEEEEeeccCccccceeeccce-----ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
++||++.++++... .++++|...... +.+|.+-|. +.|..+|+++++|++||+++|||++. ..+-+.++
T Consensus 48 iTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~qR~~~--- 122 (311)
T KOG0315|consen 48 ITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSCQRNYQ--- 122 (311)
T ss_pred EcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC-cccchhcc---
Confidence 88999988876654 578888765433 267877777 99999999999999999999999987 44444443
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeE
Q 003356 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~ 376 (827)
|..+|+++...|+..-|++|..+|.|++||+....+.+.+.......++++...|++ ..++.+- +..
T Consensus 123 ------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg----sml~a~nnkG~cy 192 (311)
T KOG0315|consen 123 ------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG----SMLAAANNKGNCY 192 (311)
T ss_pred ------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC----cEEEEecCCccEE
Confidence 789999999999999999999999999999998888877765445689999999998 6665443 788
Q ss_pred EEccCCce------EEEEecCCcceE--EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeecee
Q 003356 377 QWDEYGYR------LYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (827)
Q Consensus 377 ~W~~~~~~------l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~ 447 (827)
+|+.-+.+ .+..++.|...+ ..+++ +|+++++|.|.++++|....- +++-..
T Consensus 193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-------------------~kle~~ 253 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-------------------FKLELV 253 (311)
T ss_pred EEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-------------------eeeEEE
Confidence 99875533 223345677777 44566 999999999999999985432 123456
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 448 ~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
+.+|+..++.++||.||+||++|+.|+++ +|++..++
T Consensus 254 l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 254 LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred eecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 77999999999999999999999999999 99999886
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.92 E-value=1.8e-22 Score=192.97 Aligned_cols=280 Identities=12% Similarity=0.190 Sum_probs=207.3
Q ss_pred eEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCC
Q 003356 32 GLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQP 110 (827)
Q Consensus 32 ~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~ 110 (827)
-+||+++ |.+|++|.+. .+.-..++. . ..+.+..+...||++.||++... .||+||+.+++..
T Consensus 11 viLvsA~YDhTIRfWqa~-tG~C~rTiq-h-----~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~-------- 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQAL-TGICSRTIQ-H-----PDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN-------- 74 (311)
T ss_pred eEEEeccCcceeeeeehh-cCeEEEEEe-c-----CccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC--------
Confidence 4788885 7799999995 554333321 1 13567899999999999999755 6999999866531
Q ss_pred CCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCc
Q 003356 111 SGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGL 190 (827)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~ 190 (827)
++.+++. ......+.+|.+++..|+.|+.||.+++|+... ....
T Consensus 75 ---Pv~t~e~--------h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~--~~~q----------------------- 118 (311)
T KOG0315|consen 75 ---PVATFEG--------HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS--LSCQ----------------------- 118 (311)
T ss_pred ---ceeEEec--------cCCceEEEEEeecCeEEEecCCCceEEEEeccC--cccc-----------------------
Confidence 2222211 112334557889999999999999999965443 1111
Q ss_pred cccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee----cCCCCcEE-EEEc
Q 003356 191 ASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIA 265 (827)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~-va~s 265 (827)
......++|.++. ..|+..-++++-.++.+++||+....+. +.....+. +++.
T Consensus 119 ------------R~~~~~spVn~vv----------lhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~ 176 (311)
T KOG0315|consen 119 ------------RNYQHNSPVNTVV----------LHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM 176 (311)
T ss_pred ------------hhccCCCCcceEE----------ecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc
Confidence 0122334555544 6677777777777888999998754322 33344566 9999
Q ss_pred CCCCEEEEEecCCeEEEEEcCCCC-----cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC-
Q 003356 266 PEQQILAVGTRRGVVELYDLAESA-----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC- 339 (827)
Q Consensus 266 p~~~lla~g~~dg~v~vw~~~~~~-----~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~- 339 (827)
|||+.++.+..-|++.+|++-... .++..++. |.+-+..+.+|||+++||+++.|.+++||++.+-
T Consensus 177 ~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a--------h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 177 PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA--------HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred CCCcEEEEecCCccEEEEEccCCCccccceEhhheec--------ccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 999999999999999999986521 22334555 9999999999999999999999999999999887
Q ss_pred eeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEE
Q 003356 340 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI 398 (827)
Q Consensus 340 ~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~ 398 (827)
++..++.+| ...+...+||.++ +++++|+ ..+.|+...++......+|....++
T Consensus 249 kle~~l~gh-~rWvWdc~FS~dg----~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 249 KLELVLTGH-QRWVWDCAFSADG----EYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred eeEEEeecC-CceEEeeeeccCc----cEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence 666677777 7899999999999 9999987 8899999999988888887554433
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-23 Score=211.49 Aligned_cols=256 Identities=13% Similarity=0.105 Sum_probs=209.8
Q ss_pred EEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
+++.|+--+.++++.|.+++.||..+++.. +||.+++. ++|+..|+++|+++.|-.+.+||.++..++++.+.+
T Consensus 114 v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-- 191 (406)
T KOG0295|consen 114 VIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-- 191 (406)
T ss_pred eeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC--
Confidence 446677777787888889999998877653 89999998 999999999999999999999999874567777777
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeE
Q 003356 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~ 376 (827)
|.-.|.+++|-|-|.++++++.|.+|+.|++.++-++.++.+| ...|..++.+.|+ ..+++++ ++.
T Consensus 192 ------h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h-~ewvr~v~v~~DG----ti~As~s~dqtl~ 260 (406)
T KOG0295|consen 192 ------HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH-SEWVRMVRVNQDG----TIIASCSNDQTLR 260 (406)
T ss_pred ------cccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc-hHhEEEEEecCCe----eEEEecCCCceEE
Confidence 8999999999999999999999999999999999999999999 5699999999998 8888887 899
Q ss_pred EEccCCceEEEEecCCcceE--EEEec-----------c-----eeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcce
Q 003356 377 QWDEYGYRLYAIEEGSSERV--LIFSF-----------G-----KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (827)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v--~~~~~-----------~-----~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~ 438 (827)
+|-.++.++...+.+|.-.+ .++.+ + ..+.+++.|+++++|++..+..
T Consensus 261 vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c-------------- 326 (406)
T KOG0295|consen 261 VWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC-------------- 326 (406)
T ss_pred EEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE--------------
Confidence 99999998777777766554 22211 2 4778899999999999877644
Q ss_pred EEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEE--eCCEEEEEEEe
Q 003356 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW--LGKIIVVCNYI 515 (827)
Q Consensus 439 w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W--~~~~li~~~~~ 515 (827)
..++.+|...|+.++|+|.|+||++..+|+++ +||+++++.-.- -+.+|. .|..+.+ ...+++.|+.+
T Consensus 327 ------L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~-~~ah~h--fvt~lDfh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 327 ------LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT-LEAHEH--FVTSLDFHKTAPYVVTGSVD 397 (406)
T ss_pred ------EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec-cCCCcc--eeEEEecCCCCceEEecccc
Confidence 67889999999999999999999999999999 999999875432 224443 2333333 34466666443
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=1.6e-22 Score=203.25 Aligned_cols=322 Identities=13% Similarity=0.103 Sum_probs=230.3
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
...|+++|+.++.|++ .|+.-.||+.. .+..++.+.- +...++++.||.||.+||++.-+|.|++|++.++.
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~-~ge~~~eltg------HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDIS-TGEFAGELTG------HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEcc-CCcceeEecC------CCCceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence 3447889989999998 57888999996 6665555432 34567899999999999999999999999998654
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccc
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~ 180 (827)
.+-.. . -...+....+..+.+..+++|+.||.+..|.-+.+...+
T Consensus 140 ~~~~~-----------------~----~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~k-------------- 184 (399)
T KOG0296|consen 140 EQWKL-----------------D----QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCK-------------- 184 (399)
T ss_pred eEEEe-----------------e----cccCceEEEEecccccEEEeecCCCcEEEEECCCcceee--------------
Confidence 32111 0 012223344556667789999999998765444321111
Q ss_pred eecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee-----cC
Q 003356 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LG 255 (827)
Q Consensus 181 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-----~~ 255 (827)
.+.++...+++=+ |.|||+.++++..|+++++|+..+++.+ ..
T Consensus 185 ----------------------v~~Gh~~~ct~G~----------f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e 232 (399)
T KOG0296|consen 185 ----------------------VMSGHNSPCTCGE----------FIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE 232 (399)
T ss_pred ----------------------EecCCCCCccccc----------ccCCCceEEEEecCceEEEEecCCCceeEEecccc
Confidence 1122333333323 7899999999999999999999987655 23
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCe---EEEEECCCCCEEEEEEcCCcEE
Q 003356 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV---SCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 256 h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V---~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
|....|++++..+.++..|..++.+.+-+..+ ++.+....+......+.+...+ .++.||.+=.+.|.|+-||+|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s-gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~ 311 (399)
T KOG0296|consen 233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGS-GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIA 311 (399)
T ss_pred cCcCCccccccccceeEeccCCccEEEEcccc-ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEE
Confidence 44566799999999999999999999977766 6666555532222333344444 4455555667889999999999
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCC
Q 003356 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSG 412 (827)
Q Consensus 333 vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~ 412 (827)
|||....++.+.+. | . .|++.+.|.. .+++++++.++
T Consensus 312 iyD~a~~~~R~~c~-h-e--------------------~~V~~l~w~~---------------------t~~l~t~c~~g 348 (399)
T KOG0296|consen 312 IYDLAASTLRHICE-H-E--------------------DGVTKLKWLN---------------------TDYLLTACANG 348 (399)
T ss_pred EEecccchhheecc-C-C--------------------CceEEEEEcC---------------------cchheeeccCc
Confidence 99997654332221 1 1 1122333332 24677889999
Q ss_pred CeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcC
Q 003356 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (827)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~ 481 (827)
.++.|+.+.|.. ..+|.+|+.+|...+++|++++++++|.|+++ +|.+.
T Consensus 349 ~v~~wDaRtG~l--------------------~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 349 KVRQWDARTGQL--------------------KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEeeeccccce--------------------EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999888776 67899999999999999999999999999999 88763
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=9.6e-23 Score=230.08 Aligned_cols=267 Identities=17% Similarity=0.250 Sum_probs=219.0
Q ss_pred EeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEE
Q 003356 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (827)
Q Consensus 137 ~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 216 (827)
.+++++..++.++.++.++.+.+..... ... .....+...|.++.
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~---------------------------------~~l~~h~~~v~~~~- 210 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKS-NLL---------------------------------RELSGHTRGVSDVA- 210 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccc-hhh---------------------------------ccccccccceeeeE-
Confidence 4688899988888999998866532221 000 01123444565554
Q ss_pred cCCcceEEEEEeCCcEEEEeeccCccccceeecc-c---eecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcc
Q 003356 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-D---KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASL 291 (827)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~-~---~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~ 291 (827)
+++||+++++++.|.++++|+.... . .+.+|...+. ++|+|+++++++|+.|++|++||+.+ +++
T Consensus 211 ---------fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~ 280 (456)
T KOG0266|consen 211 ---------FSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GEC 280 (456)
T ss_pred ---------ECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeE
Confidence 8999999999999999999999433 2 2379999888 99999999999999999999999998 899
Q ss_pred eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe--eEEEecccccc-ceeeeeecCCCCCCccc
Q 003356 292 IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLS-SISSPIVKPNQDCKYEP 368 (827)
Q Consensus 292 ~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~--l~~tl~~~~~~-~v~s~~~sp~~~~~~~~ 368 (827)
++.+.+ |.++|++++|++||..|++++.|+.|++||+.++. +..++.++... .++++.|+|++ ..
T Consensus 281 ~~~l~~--------hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~----~~ 348 (456)
T KOG0266|consen 281 VRKLKG--------HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG----KY 348 (456)
T ss_pred EEeeec--------cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC----cE
Confidence 999999 99999999999999999999999999999999998 56777776444 68999999999 88
Q ss_pred eeecc---eeEEEccCCceEEEEecCCcceE---EEEe--c-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceE
Q 003356 369 LMSGT---SMMQWDEYGYRLYAIEEGSSERV---LIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (827)
Q Consensus 369 l~sg~---~i~~W~~~~~~l~~~~~~~~~~v---~~~~--~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w 439 (827)
++++. .++.|+...+.......+|...+ .... . ++.+.+|+.|+.+.+|+...+..
T Consensus 349 ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~--------------- 413 (456)
T KOG0266|consen 349 LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI--------------- 413 (456)
T ss_pred EEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch---------------
Confidence 87776 89999999999888888877643 2222 1 88999999999999999876444
Q ss_pred EEeeeceeeccC-CCcEEEEEEcCCCCEEEEEe--CCceE-EEEc
Q 003356 440 LHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAG--LHGLI-LYDI 480 (827)
Q Consensus 440 ~~~~~p~~~~~~-~~~I~~va~SpdG~~lavag--~dg~i-iwd~ 480 (827)
...+.+| ...+..++++|...++++++ .|+.+ +|..
T Consensus 414 -----~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 414 -----LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred -----hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 5667788 88999999999999999999 78888 8864
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.91 E-value=4.2e-24 Score=212.34 Aligned_cols=272 Identities=14% Similarity=0.213 Sum_probs=218.7
Q ss_pred cceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccE
Q 003356 132 GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (827)
Q Consensus 132 ~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (827)
...|.|+..|.+.|+.|..|++|++ ||....... ..+.++.+.+
T Consensus 197 skgVYClQYDD~kiVSGlrDnTiki--WD~n~~~c~----------------------------------~~L~GHtGSV 240 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKI--WDKNSLECL----------------------------------KILTGHTGSV 240 (499)
T ss_pred CCceEEEEecchhhhcccccCceEE--eccccHHHH----------------------------------HhhhcCCCcE
Confidence 4468999999999999999999998 554332111 2345667777
Q ss_pred EEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCC
Q 003356 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE 287 (827)
Q Consensus 212 ~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~ 287 (827)
.++. -|.+++++++.|.++++||..+++.+ .+|..+|- +.|+ ..++++++.|.+++|||+..
T Consensus 241 LCLq------------yd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 241 LCLQ------------YDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred Eeee------------ccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC
Confidence 6666 45678899999999999999988776 67999887 8886 45899999999999999987
Q ss_pred CC--cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCC
Q 003356 288 SA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (827)
Q Consensus 288 ~~--~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~ 365 (827)
+. .+.+.+.+ |..+|+.+.|+. +++++++.|.+|++|++.++..+.++.+| ...+.++.+ .+
T Consensus 307 ps~it~rrVLvG--------HrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gH-kRGIAClQY--r~--- 370 (499)
T KOG0281|consen 307 PTDITLRRVLVG--------HRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGH-KRGIACLQY--RD--- 370 (499)
T ss_pred chHHHHHHHHhh--------hhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcc-cccceehhc--cC---
Confidence 33 22346666 999999999864 59999999999999999999999999998 566666655 33
Q ss_pred ccceeecc---eeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEE
Q 003356 366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (827)
Q Consensus 366 ~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~ 441 (827)
..+++|+ ++++|+++.+.++..++||.+-|.++.| .+.+++|++||++++|++..+.+.-....
T Consensus 371 -rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~----------- 438 (499)
T KOG0281|consen 371 -RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPAS----------- 438 (499)
T ss_pred -eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCccccc-----------
Confidence 7788887 9999999999999999999999999999 88999999999999999988776200000
Q ss_pred eeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCC
Q 003356 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~ 483 (827)
-.+..++..|.+.|..+.| |...+++.+.|.+| +||...+
T Consensus 439 ~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 439 TLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred chHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 0012345678889999999 45788899999999 9998665
No 35
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=228.33 Aligned_cols=268 Identities=15% Similarity=0.220 Sum_probs=212.4
Q ss_pred EEEEeCCcEEEEeeccCccccceeeccc-----eecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEe
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
+.|++||+.++.+..++.+++|+....+ ...+|...+. ++|+|+++++++|+.|++|++||+...+..++++++
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 5689999998888889999999884433 1267888888 999999999999999999999999553688899998
Q ss_pred ecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---e
Q 003356 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~ 374 (827)
|+..|++++|+|+|+.+++|+.|++|+|||+.++++...+.+| ...|++++|++++ ..+++++ .
T Consensus 245 --------H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h-s~~is~~~f~~d~----~~l~s~s~d~~ 311 (456)
T KOG0266|consen 245 --------HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH-SDGISGLAFSPDG----NLLVSASYDGT 311 (456)
T ss_pred --------CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc-CCceEEEEECCCC----CEEEEcCCCcc
Confidence 9999999999999999999999999999999999999999999 6789999999999 8888887 8
Q ss_pred eEEEccCCce--EEEEecCCcce--E--EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeecee
Q 003356 375 MMQWDEYGYR--LYAIEEGSSER--V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (827)
Q Consensus 375 i~~W~~~~~~--l~~~~~~~~~~--v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~ 447 (827)
+++||..+++ +.....++... + .+|++ ++.+++++.|+++++|++..+.. +..
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~--------------------~~~ 371 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS--------------------VGT 371 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc--------------------eee
Confidence 9999999999 44555554433 5 55555 99999999999999999876665 566
Q ss_pred eccCCC---cEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCC--EEEEEEEeeCCCcE
Q 003356 448 YISQNW---PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTY 521 (827)
Q Consensus 448 ~~~~~~---~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~--~li~~~~~~~~~~~ 521 (827)
+.+|.. .+.+...+++|+++.+|+.|+.+ +||..++.-..- .+.+ ..-.+..+.|... .+..+. ...+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~-l~~h-~~~~~~~~~~~~~~~~~~s~s---~~~d~ 446 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR-LEGH-SKAAVSDLSSHPTENLIASSS---FEGDG 446 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh-hcCC-CCCceeccccCCCcCeeeecC---cCCCc
Confidence 666655 45556668999999999999999 999998642211 1111 1224567777643 333321 12345
Q ss_pred EEEEeeCC
Q 003356 522 ELLFYPRY 529 (827)
Q Consensus 522 ~lrly~~~ 529 (827)
.+++|..+
T Consensus 447 ~~~~w~~~ 454 (456)
T KOG0266|consen 447 LIRLWKYD 454 (456)
T ss_pred eEEEecCC
Confidence 67777653
No 36
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=4.2e-21 Score=206.55 Aligned_cols=277 Identities=15% Similarity=0.128 Sum_probs=178.2
Q ss_pred EEEEecCCeEEEEEcCCCCcceEEE-------EeecCCC----------------------CCCCCCCeEEEEECCCCCE
Q 003356 271 LAVGTRRGVVELYDLAESASLIRTV-------SLYDWGY----------------------SMDDTGPVSCIAWTPDNSA 321 (827)
Q Consensus 271 la~g~~dg~v~vw~~~~~~~~~~~l-------~~~~~~~----------------------~~~h~~~V~~l~~spDg~~ 321 (827)
+.+++.|++||+|+++. ...-..+ ...+.+| ..+....+++++.||||++
T Consensus 395 F~TCSsD~TIRlW~l~~-ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAF-CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred eeEecCCCcEEEeeccc-ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 78999999999999975 2111110 0011111 1134557999999999999
Q ss_pred EEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccC-CceEEEEecCCcceEE
Q 003356 322 FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGSSERVL 397 (827)
Q Consensus 322 Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~-~~~l~~~~~~~~~~v~ 397 (827)
||+|..-|+++|+++..-+.++.+..| .+.|.++.|+.-. .....+++++ .+.++|.. +|.++.++.+|...|.
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAH-esEilcLeyS~p~-~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAH-ESEILCLEYSFPV-LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecc-cceeEEEeecCch-hhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 999999999999999998888888888 7889999987532 2236778887 56677764 6778888999999998
Q ss_pred EEec---c--eeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeC
Q 003356 398 IFSF---G--KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (827)
Q Consensus 398 ~~~~---~--~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~ 472 (827)
++.| + ..+++++.|..+.+....+..+..++.++ +... ....+..+++.|.-++++++++
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~--------------t~t~-~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH--------------TQTL-SKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceecccc--------------cccc-ccceEEEeeeCCCcceEEEEec
Confidence 8887 2 56778888887766554443332221111 0111 1235788999999999999999
Q ss_pred CceE-EEEcCCCeE-EeeCC-ccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeCC--CCCccceEEEEecCCccE
Q 003356 473 HGLI-LYDIRQKKW-RVFGD-ITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPI 547 (827)
Q Consensus 473 dg~i-iwd~~t~~w-~~f~~-~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~~--~l~~~~~~~~~~l~~~~~ 547 (827)
|..| |||+++||- |.|.. ..+|.+..-.-+.=.+.++...|.+ ..|-+|.+. ..-.....|.+-+ .-..
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd-----ktl~~~Df~sgEcvA~m~GHsE~V-TG~k 690 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD-----KTLCFVDFVSGECVAQMTGHSEAV-TGVK 690 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC-----CceEEEEeccchhhhhhcCcchhe-eeee
Confidence 9999 999999985 45643 3333432211233334455444443 346666553 2222222222221 2123
Q ss_pred EEEccCCEEEEEEcCceEEEEEEEE
Q 003356 548 VMDVYEDYILVTYRPFDVHIFHVKL 572 (827)
Q Consensus 548 ~l~~~~~~llV~~~~~~i~l~~~~~ 572 (827)
+.+-+ ..|+-...|+-|-||++-.
T Consensus 691 F~nDC-kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 691 FLNDC-KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ecccc-hhheeecCCceEEEEECch
Confidence 33333 3444447788999998753
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.90 E-value=2.3e-21 Score=204.16 Aligned_cols=274 Identities=20% Similarity=0.252 Sum_probs=194.4
Q ss_pred cCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceE--EEeecCCCe
Q 003356 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKH 144 (827)
Q Consensus 67 ~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~~d~~~ 144 (827)
.+.+.+++|+||+++|++++.+|.+++|++......... ..+...+ ..+.++++.
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-----------------------~~~~~~i~~~~~~~~~~~ 65 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-----------------------KGHTGPVRDVAASADGTY 65 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-----------------------ecCCcceeEEEECCCCCE
Confidence 477889999999999999999999999999754311111 1111122 234556678
Q ss_pred EEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEE
Q 003356 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (827)
Q Consensus 145 llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (827)
+++++.+|.+.+|+.+...... .+..+...+.++.
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~------------------------------------~~~~~~~~i~~~~--------- 100 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVR------------------------------------TLTGHTSYVSSVA--------- 100 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceE------------------------------------EEeccCCcEEEEE---------
Confidence 9999999999987665321110 0112233466655
Q ss_pred EEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecC
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~ 300 (827)
+.+++++++++..++.+.+|+....+.. ..|...+. ++|+|++.++++++.||.|++||+.. .+.+..+..
T Consensus 101 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~--- 175 (289)
T cd00200 101 -FSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTG--- 175 (289)
T ss_pred -EcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc-cccceeEec---
Confidence 4455666666655677777876643322 45776666 99999999999999999999999987 677777776
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEcc
Q 003356 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380 (827)
Q Consensus 301 ~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~ 380 (827)
|.+.|.+++|+|+++.+++++.|+.+++||+..++....+..+ ...+.++.++|++ .
T Consensus 176 -----~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~----~------------- 232 (289)
T cd00200 176 -----HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH-ENGVNSVAFSPDG----Y------------- 232 (289)
T ss_pred -----CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc-CCceEEEEEcCCC----c-------------
Confidence 8889999999999999999999999999999887777666544 3345555554442 2
Q ss_pred CCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEE
Q 003356 381 YGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA 460 (827)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~ 460 (827)
.+++++.++.+++|++..+.. ...+..|..+|.+++|
T Consensus 233 -----------------------~~~~~~~~~~i~i~~~~~~~~--------------------~~~~~~~~~~i~~~~~ 269 (289)
T cd00200 233 -----------------------LLASGSEDGTIRVWDLRTGEC--------------------VQTLSGHTNSVTSLAW 269 (289)
T ss_pred -----------------------EEEEEcCCCcEEEEEcCCcee--------------------EEEccccCCcEEEEEE
Confidence 223344466677776543322 2334467788999999
Q ss_pred cCCCCEEEEEeCCceE-EEE
Q 003356 461 SKDGMFLAVAGLHGLI-LYD 479 (827)
Q Consensus 461 SpdG~~lavag~dg~i-iwd 479 (827)
+|+|+++++++.||.+ +|+
T Consensus 270 ~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 270 SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCCCEEEEecCCCeEEecC
Confidence 9999999999999999 985
No 38
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=4e-23 Score=197.33 Aligned_cols=236 Identities=18% Similarity=0.212 Sum_probs=194.3
Q ss_pred cCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee--cCCCCcEE-EEEcCCCCEEEEEecCCeE
Q 003356 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVV 280 (827)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~-va~sp~~~lla~g~~dg~v 280 (827)
+..+++.+.+.. +..|-...++++.|.+.++|+..++..+ ..|...|. ++|+.|...|.+|+.+..+
T Consensus 55 feghkgavw~~~----------l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekll 124 (334)
T KOG0278|consen 55 FEGHKGAVWSAT----------LNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLL 124 (334)
T ss_pred eeccCcceeeee----------cCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHh
Confidence 345666664433 4445556677788999999999988765 56888898 9999999999999999999
Q ss_pred EEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecC
Q 003356 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (827)
Q Consensus 281 ~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp 360 (827)
||||++....+...+.+ |++.|+.+-|....+++.++.+|++||+||..++..+++|.- ...|+++.+++
T Consensus 125 rvfdln~p~App~E~~g--------htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSlEvs~ 194 (334)
T KOG0278|consen 125 RVFDLNRPKAPPKEISG--------HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSLEVSQ 194 (334)
T ss_pred hhhhccCCCCCchhhcC--------CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec--CCCCcceeecc
Confidence 99999875556666777 999999999999889999999999999999999999999876 35799999999
Q ss_pred CCCCCccce--eecceeEEEccCCceEEEEecCCcceE--EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCC
Q 003356 361 NQDCKYEPL--MSGTSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (827)
Q Consensus 361 ~~~~~~~~l--~sg~~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~ 435 (827)
++ +.+ +-|+.+.+|++.+..++...+. ...| ..+.+ ...++.|+.|+.++-+|..++++
T Consensus 195 dG----~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE----------- 258 (334)
T KOG0278|consen 195 DG----RILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE----------- 258 (334)
T ss_pred CC----CEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCce-----------
Confidence 98 554 5667999999999988876543 2234 44555 55678899999999999888877
Q ss_pred cceEEEeeeceee-ccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 436 ELKILHLNLPVSY-ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 436 ~~~w~~~~~p~~~-~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
...| .+|.+||.++.|||||...|+|++||++ +|.+..++
T Consensus 259 ---------i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 259 ---------IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ---------eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 3345 7899999999999999999999999999 99987654
No 39
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.5e-22 Score=200.66 Aligned_cols=277 Identities=13% Similarity=0.140 Sum_probs=223.5
Q ss_pred cccccceEEEee--cCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccC
Q 003356 128 FAEKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (827)
Q Consensus 128 ~~~~~~~v~~~~--~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~ 205 (827)
+.++..+|+.+- ++-..+++++.|++|++|+.. ..+-. .++.
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~--tg~~e----------------------------------~~Lr 147 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTE--TGELE----------------------------------RSLR 147 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEcc--chhhh----------------------------------hhhh
Confidence 445555665553 334556777789999985543 22111 1233
Q ss_pred CCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecc-ce---ecCCCCcEE-EEEcCCCCEEEEEecCCeE
Q 003356 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-DK---ELGSGDAVC-ASIAPEQQILAVGTRRGVV 280 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~-~~---~~~h~~~v~-va~sp~~~lla~g~~dg~v 280 (827)
++...+.++. ++..|+++++++.|-.+++|+.... ++ ..+|+..+. ++|-|.|.+|++++.|.+|
T Consensus 148 GHt~sv~di~----------~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ti 217 (406)
T KOG0295|consen 148 GHTDSVFDIS----------FDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTI 217 (406)
T ss_pred ccccceeEEE----------EecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccce
Confidence 4444466655 7778899999999988999998763 22 268888887 9999999999999999999
Q ss_pred EEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecC
Q 003356 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (827)
Q Consensus 281 ~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp 360 (827)
+.|++++ +-+++++.+ |..-|..++.+.||..+|+++.|.++++|-+.++.+...+++| ...|.+++|-|
T Consensus 218 k~We~~t-g~cv~t~~~--------h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~wap 287 (406)
T KOG0295|consen 218 KAWECDT-GYCVKTFPG--------HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAWAP 287 (406)
T ss_pred eEEeccc-ceeEEeccC--------chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEecc
Confidence 9999999 899999998 9999999999999999999999999999999999888888887 67788888766
Q ss_pred CCCC----------C-ccceeecc---eeEEEccCCceEEEEecCCcceE--EEEec-ceeeeecccCCCeeeeEEEEcC
Q 003356 361 NQDC----------K-YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGE 423 (827)
Q Consensus 361 ~~~~----------~-~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~ 423 (827)
.... + .+.+.+++ ++++|+..++.++.++.+|...| .+|++ ||+++++..|+++++|++....
T Consensus 288 ~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 288 ESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred cccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 4420 1 13566666 89999999999999999999999 56666 9999999999999999987665
Q ss_pred CeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 424 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 424 ~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
. ..++..|..-+.++.|..+-.|+++|+-|..+ +|..
T Consensus 368 c--------------------mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 368 C--------------------MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred e--------------------eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 5 45666888899999999999999999999999 8853
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=4.3e-23 Score=205.20 Aligned_cols=262 Identities=11% Similarity=0.175 Sum_probs=215.0
Q ss_pred ceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcE-EEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEE
Q 003356 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (827)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v-~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~ 296 (827)
.+.-++--|...++++..|.++++||.....+. .||++.| |+.| +.++|++|+.|.+|+|||+.+ ++++.++-
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~t-ge~l~tli 274 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNT-GEPLNTLI 274 (499)
T ss_pred CceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccC-CchhhHHh
Confidence 455556667778889999999999998876543 7899877 4666 667999999999999999999 89999888
Q ss_pred eecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe---eEEEeccccccceeeeeecCCCCCCccceeecc
Q 003356 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~---l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
. |...|..+.|+. .++++++.|.+++||++.... +...|.+| ..+|+.+.|+ + ..+++++
T Consensus 275 h--------HceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVdfd--~----kyIVsAS 337 (499)
T KOG0281|consen 275 H--------HCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFD--D----KYIVSAS 337 (499)
T ss_pred h--------hcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeeccc--c----ceEEEec
Confidence 8 999999999985 489999999999999997654 34566777 6788888884 3 5666665
Q ss_pred ---eeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeec
Q 003356 374 ---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (827)
Q Consensus 374 ---~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~ 449 (827)
++++|+..+++++.++.+|+..|.++.+ ++.+++|+.|.++++|++..|.. ...+.
T Consensus 338 gDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~c--------------------LRvLe 397 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC--------------------LRVLE 397 (499)
T ss_pred CCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHH--------------------HHHHh
Confidence 9999999999999999999999999999 99999999999999999887765 66788
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEee-C-----CccceEEEEEEEEEEeCCEEEEEEEeeCCCcEE
Q 003356 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF-G-----DITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYE 522 (827)
Q Consensus 450 ~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f-~-----~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~ 522 (827)
||..-|+++.|+ .+.+++|+.||.+ +||+.++.-... . ....|+...|.++++...-+|++ +.+.+
T Consensus 398 GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvss-----sHddt 470 (499)
T KOG0281|consen 398 GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISS-----SHDDT 470 (499)
T ss_pred chHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEec-----cCCCe
Confidence 999999999994 5789999999999 999987642200 0 11124555678888888778776 45578
Q ss_pred EEEeeCC
Q 003356 523 LLFYPRY 529 (827)
Q Consensus 523 lrly~~~ 529 (827)
|.+|.+.
T Consensus 471 ILiWdFl 477 (499)
T KOG0281|consen 471 ILIWDFL 477 (499)
T ss_pred EEEEEcC
Confidence 9999996
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=2.6e-21 Score=234.70 Aligned_cols=227 Identities=12% Similarity=0.149 Sum_probs=172.5
Q ss_pred CCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCC
Q 003356 229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (827)
Q Consensus 229 dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~ 303 (827)
+++.++++..|+++++|+..+.+.. .+|.+.+. ++|+| ++.+|++|+.||+|++||+.+ +..+..+..
T Consensus 544 ~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~------ 616 (793)
T PLN00181 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKT------ 616 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEec------
Confidence 4667788888999999998765433 68988887 99997 789999999999999999987 666666654
Q ss_pred CCCCCCeEEEEEC-CCCCEEEEEEcCCcEEEEeccCCe-eEEEeccccccceeeeeecCCCCCCccceeecc---eeEEE
Q 003356 304 MDDTGPVSCIAWT-PDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW 378 (827)
Q Consensus 304 ~~h~~~V~~l~~s-pDg~~Lasg~~Dg~v~vWs~~~~~-l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W 378 (827)
...|.+++|+ ++|..||+|+.||.|++||+.... ...++.+| ...|.++.|. ++ ..+++++ ++++|
T Consensus 617 ---~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~-~~----~~lvs~s~D~~ikiW 687 (793)
T PLN00181 617 ---KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFV-DS----STLVSSSTDNTLKLW 687 (793)
T ss_pred ---CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC-CCCEEEEEEe-CC----CEEEEEECCCEEEEE
Confidence 3679999995 579999999999999999997654 46677777 6789999996 44 5666665 89999
Q ss_pred ccCC------ceEEEEecCCcceE--EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEe-eec-ee
Q 003356 379 DEYG------YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL-NLP-VS 447 (827)
Q Consensus 379 ~~~~------~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~-~~p-~~ 447 (827)
+... ...+..+.+|...+ +.+++ ++.+++|+.|+++++|+...... +..+.. ... .++ ..
T Consensus 688 d~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~-~~s~~~--------~~~~~~~~~~ 758 (793)
T PLN00181 688 DLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP-VLSYKF--------KTIDPVSGLE 758 (793)
T ss_pred eCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc-eEEEec--------ccCCcccccc
Confidence 9863 35666777887766 45555 78999999999999998543321 111100 000 000 01
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 448 ~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
...|...|++++|+|+|.++++|+.||.+ +|++
T Consensus 759 ~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 759 VDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 23456679999999999999999999999 9986
No 42
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.3e-21 Score=211.94 Aligned_cols=273 Identities=19% Similarity=0.244 Sum_probs=195.9
Q ss_pred EEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeec
Q 003356 26 YFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQI 105 (827)
Q Consensus 26 ~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~ 105 (827)
..| ..+.+|++-...|++|+.. .+....-+. +. .+.++++.|+|+|+.||+++.+|+|.|||+......
T Consensus 184 dWs-s~n~laValg~~vylW~~~-s~~v~~l~~-----~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~--- 252 (484)
T KOG0305|consen 184 DWS-SANVLAVALGQSVYLWSAS-SGSVTELCS-----FG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT--- 252 (484)
T ss_pred hcc-cCCeEEEEecceEEEEecC-CCceEEeEe-----cC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc---
Confidence 345 4557888888889999985 443211111 11 367899999999999999999999999998643311
Q ss_pred CCCCCCCceeeeEeeEeeccccccc-ccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecc
Q 003356 106 GGKQPSGLFFIKISLVLNEQLPFAE-KGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHH 184 (827)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~ 184 (827)
..+.+ +...|.+++..+..+.+|+.+|.|..++....
T Consensus 253 --------------------~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~---------------------- 290 (484)
T KOG0305|consen 253 --------------------RTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRIS---------------------- 290 (484)
T ss_pred --------------------ccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecc----------------------
Confidence 01122 55667677777667777777776654321100
Q ss_pred cCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEE-EE
Q 003356 185 FPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-AS 263 (827)
Q Consensus 185 s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-va 263 (827)
+.++ ..+.+|..-|| ++
T Consensus 291 ----------------------------------------------~~~~----------------~~~~~H~qeVCgLk 308 (484)
T KOG0305|consen 291 ----------------------------------------------QHVV----------------STLQGHRQEVCGLK 308 (484)
T ss_pred ----------------------------------------------hhhh----------------hhhhcccceeeeeE
Confidence 0000 00257899999 99
Q ss_pred EcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEE--cCCcEEEEeccCCe
Q 003356 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGW--KSRGLTVWSVSGCR 340 (827)
Q Consensus 264 ~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~--~Dg~v~vWs~~~~~ 340 (827)
|++|+.++|+|+.|+.+.|||... .++...+.. |+++|..++|+| ....||+|+ .|+.|++|++.++.
T Consensus 309 ws~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~--------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 309 WSPDGNQLASGGNDNVVFIWDGLS-PEPKFTFTE--------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred ECCCCCeeccCCCccceEeccCCC-ccccEEEec--------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 999999999999999999999966 677777777 999999999999 677999874 79999999999998
Q ss_pred eEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEE
Q 003356 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVI 420 (827)
Q Consensus 341 l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~ 420 (827)
.+..+... +.+..+.|.....+++.+..-. +..+.+|...
T Consensus 380 ~i~~vdtg----------------------sQVcsL~Wsk~~kEi~sthG~s------------------~n~i~lw~~p 419 (484)
T KOG0305|consen 380 RIDSVDTG----------------------SQVCSLIWSKKYKELLSTHGYS------------------ENQITLWKYP 419 (484)
T ss_pred EecccccC----------------------CceeeEEEcCCCCEEEEecCCC------------------CCcEEEEecc
Confidence 77554322 1135567777766665553221 2234455543
Q ss_pred EcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 421 ~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
+... ...+.+|...|.++++||||..+++|+.|.++ +|++-.
T Consensus 420 s~~~--------------------~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 420 SMKL--------------------VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ccce--------------------eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 3222 55678999999999999999999999999999 998754
No 43
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=9.3e-22 Score=200.09 Aligned_cols=274 Identities=15% Similarity=0.200 Sum_probs=198.5
Q ss_pred EEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCcee
Q 003356 25 IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (827)
Q Consensus 25 v~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~ 103 (827)
+.||++|++||+++ |.+.-||.+. +.+.+. +..+.. .+..++..+.||||.++|++++.+..+.+||+.++....
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~-~d~~~k-l~~tlv--gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVV-YDVHFK-LKKTLV--GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH 305 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEe-cCccee-eeeeee--cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh
Confidence 78999999999995 6788999984 544422 233322 245677889999999999999999999999998765322
Q ss_pred ecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceec
Q 003356 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSH 183 (827)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~ 183 (827)
..+.. -+....-++..||+.++++|+.|+.+..|+.|++....-
T Consensus 306 ~y~~~--------------------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W---------------- 349 (519)
T KOG0293|consen 306 LYPSG--------------------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNW---------------- 349 (519)
T ss_pred hcccC--------------------cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcc----------------
Confidence 11100 011223345678999999999999998877776543321
Q ss_pred ccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcE
Q 003356 184 HFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV 260 (827)
Q Consensus 184 ~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v 260 (827)
-......|.+++ +++||+.+++...|..+++.+.+..... ..+...+
T Consensus 350 --------------------~gvr~~~v~dla----------it~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~it 399 (519)
T KOG0293|consen 350 --------------------EGVRDPKVHDLA----------ITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPIT 399 (519)
T ss_pred --------------------cccccceeEEEE----------EcCCCcEEEEEecccceeeechhhhhhhccccccCcee
Confidence 111223465655 8899998888888888887776643222 3334444
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCC--eEEEEECC-CCCEEEEEEcCCcEEEEecc
Q 003356 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP--VSCIAWTP-DNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 261 ~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~--V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~ 337 (827)
...+|.+++++.+--.+..+++||+.+ ...++...+ |+-. +-.=+|-- |..++|+|++|+.|+||+..
T Consensus 400 s~~iS~d~k~~LvnL~~qei~LWDl~e-~~lv~kY~G--------hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 400 SFSISKDGKLALVNLQDQEIHLWDLEE-NKLVRKYFG--------HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred EEEEcCCCcEEEEEcccCeeEEeecch-hhHHHHhhc--------ccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 599999999999999999999999997 777777777 5432 22224543 66899999999999999999
Q ss_pred CCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccC
Q 003356 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (827)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~ 381 (827)
+++++.+|.|| ...|++++++|.++ +.+++++ ++++|.+.
T Consensus 471 sgkll~~LsGH-s~~vNcVswNP~~p---~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 471 SGKLLAVLSGH-SKTVNCVSWNPADP---EMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCceeEeecCC-cceeeEEecCCCCH---HHhhccCCCCeEEEecCC
Confidence 99999999999 67899999998762 4455554 66666654
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.6e-19 Score=197.32 Aligned_cols=266 Identities=13% Similarity=0.181 Sum_probs=218.5
Q ss_pred EeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEE
Q 003356 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (827)
Q Consensus 137 ~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 216 (827)
+|.|.+-.++++.-+|.|+.|+.. ...-. ..+.+++++|..+.
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYR--M~tli----------------------------------~rFdeHdGpVRgv~- 58 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYR--MGTLI----------------------------------DRFDEHDGPVRGVD- 58 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhh--hhhHH----------------------------------hhhhccCCccceee-
Confidence 445666789999999999985443 21100 12456788888877
Q ss_pred cCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcce
Q 003356 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLI 292 (827)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~ 292 (827)
|.+.+-+++++++|..+++|+....+++ .||-+-|+ +.|++...+|.+++.|.|||||+..+ ..++
T Consensus 59 ---------FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-r~~i 128 (1202)
T KOG0292|consen 59 ---------FHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-RKCI 128 (1202)
T ss_pred ---------ecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-CceE
Confidence 7778888999999999999998877665 89999999 99999999999999999999999998 8999
Q ss_pred EEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe---------------------e--------EE
Q 003356 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---------------------L--------MS 343 (827)
Q Consensus 293 ~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~---------------------l--------~~ 343 (827)
..+.+ |.-.|.|..|.|....++|++-|.+|||||+.|-+ + ..
T Consensus 129 avltG--------HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 129 AVLTG--------HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred EEEec--------CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 99999 99999999999999999999999999999985411 1 12
Q ss_pred EeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEE--ecCCcceEE--EEec-ceeeeecccCCCee
Q 003356 344 TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI--EEGSSERVL--IFSF-GKCCLNRGVSGMTY 415 (827)
Q Consensus 344 tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~--~~~~~~~v~--~~~~-~~~~~s~~~d~~~~ 415 (827)
.+.+| ...|+-++|+|.- ..++||. .+++|.....+-|-+ ..+|.+.|. .|.+ ...++|.|.|++++
T Consensus 201 VLEGH-DRGVNwaAfhpTl----pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksir 275 (1202)
T KOG0292|consen 201 VLEGH-DRGVNWAAFHPTL----PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIR 275 (1202)
T ss_pred eeccc-ccccceEEecCCc----ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEE
Confidence 34455 6789999999987 8888988 888998877777753 568888884 4444 67899999999999
Q ss_pred eeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEcCC
Q 003356 416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQ 482 (827)
Q Consensus 416 ~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~~t 482 (827)
+|++..... .+++...+..-+.+|..|.++.+|.|-+.|.++|-++.
T Consensus 276 VwDm~kRt~--------------------v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 276 VWDMTKRTS--------------------VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLER 322 (1202)
T ss_pred EEecccccc--------------------eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcc
Confidence 999876655 56777778889999999999999988888888987653
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.88 E-value=3.1e-21 Score=193.09 Aligned_cols=275 Identities=11% Similarity=0.150 Sum_probs=214.5
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEE
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
.+|.+.|. +++.|..+++|+|+.|++++|||+.+ +++..++.+ |...|..+++|+---+|+++++|+.|+
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltG--------hi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTG--------HIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecc--------hhheeeeeeecccCceEEEecCCCeeE
Confidence 78999998 99999999999999999999999999 888888888 999999999999999999999999999
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeee
Q 003356 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL 406 (827)
Q Consensus 333 vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~ 406 (827)
.||+..++.+....+| .+.|.+++.+|.. ..+++|+ ++++||.++..-+.++.+|...|..+-+ ...++
T Consensus 219 CwDLe~nkvIR~YhGH-lS~V~~L~lhPTl----dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGH-LSGVYCLDLHPTL----DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred EEechhhhhHHHhccc-cceeEEEeccccc----eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence 9999999999999888 8899999999998 8888886 8999999999999999999998844333 66899
Q ss_pred ecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEcCCCeEE
Q 003356 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR 486 (827)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~~t~~w~ 486 (827)
|+|.|+++++||+..+.. ..++..|+..+++++.+|+...+|+|+.|.+-.|++..|..
T Consensus 294 t~S~D~tvrlWDl~agkt--------------------~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f- 352 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKT--------------------MITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEF- 352 (460)
T ss_pred EecCCceEEEeeeccCce--------------------eEeeecccceeeEEecCCchhhhhccCCccceeccCCccch-
Confidence 999999999999998877 45677899999999999999999999999877999987752
Q ss_pred eeCCccceEEEEEEEEEEeCC-EEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEecCC-----ccEEEEc---cCCEEE
Q 003356 487 VFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA-----KPIVMDV---YEDYIL 557 (827)
Q Consensus 487 ~f~~~~~e~~~~v~gl~W~~~-~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~~-----~~~~l~~---~~~~ll 557 (827)
..|.+. +.-.+..|.-+.+ ++++| .....|-+|......+-+.+.+..-|. .-+..++ .+.-|+
T Consensus 353 -~~nlsg-h~~iintl~~nsD~v~~~G-----~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 353 -LQNLSG-HNAIINTLSVNSDGVLVSG-----GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred -hhcccc-ccceeeeeeeccCceEEEc-----CCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 234332 2223445666554 55555 222456666654222222222111121 1233333 233455
Q ss_pred EEEcCceEEEEEE
Q 003356 558 VTYRPFDVHIFHV 570 (827)
Q Consensus 558 V~~~~~~i~l~~~ 570 (827)
..-+|..|.+|+-
T Consensus 426 t~eadKtIk~~ke 438 (460)
T KOG0285|consen 426 TGEADKTIKMYKE 438 (460)
T ss_pred eccCCcceEEEec
Confidence 5666778888853
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.88 E-value=1.1e-20 Score=229.05 Aligned_cols=272 Identities=15% Similarity=0.199 Sum_probs=203.0
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeecc----c-------eecCCCCcEEEEEcC-CCCEEEEEecCCeEEEEEcCCCC
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKI----D-------KELGSGDAVCASIAP-EQQILAVGTRRGVVELYDLAESA 289 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~----~-------~~~~h~~~v~va~sp-~~~lla~g~~dg~v~vw~~~~~~ 289 (827)
..+.+++||+++++++.|+++++|+.... . ...++....+++|+| ++.+||+|+.||+|++||+.+ +
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~-~ 565 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR-S 565 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC-C
Confidence 44668899999999999999999986421 0 012233333488987 478999999999999999987 6
Q ss_pred cceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecC-CCCCCcc
Q 003356 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP-NQDCKYE 367 (827)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp-~~~~~~~ 367 (827)
+.+..+.+ |.+.|++++|+| ||.+|++|+.|++|++||+..+..+.++..+ ..+.++.|++ ++ .
T Consensus 566 ~~~~~~~~--------H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g----~ 631 (793)
T PLN00181 566 QLVTEMKE--------HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESG----R 631 (793)
T ss_pred eEEEEecC--------CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCC----C
Confidence 77777777 999999999997 8999999999999999999988888888754 4688888854 45 6
Q ss_pred ceeecc---eeEEEccCCce-EEEEecCCcceEEEEec--ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEE
Q 003356 368 PLMSGT---SMMQWDEYGYR-LYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (827)
Q Consensus 368 ~l~sg~---~i~~W~~~~~~-l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~ 441 (827)
.+++|+ .+.+|+....+ .+....+|...|..+.| +..+++++.|+++++|++..+.... .+
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~-----------~~-- 698 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI-----------NE-- 698 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc-----------CC--
Confidence 777776 89999998765 45666788888876666 7789999999999999976432100 00
Q ss_pred eeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe--EE-eeCCcc-------ceEEEEEEEEEEeCC--E
Q 003356 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WR-VFGDIT-------QEQKIQSKGLLWLGK--I 508 (827)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~--w~-~f~~~~-------~e~~~~v~gl~W~~~--~ 508 (827)
+....+.+|...+.+++|+|+|++||+|+.||.+ +|+..... |. .|.... .+....|..++|.++ .
T Consensus 699 -~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 699 -TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred -cceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 0134567899999999999999999999999999 99986542 11 121111 112234778999754 6
Q ss_pred EEEEEEeeCCCcEEEEEee
Q 003356 509 IVVCNYIDSSNTYELLFYP 527 (827)
Q Consensus 509 li~~~~~~~~~~~~lrly~ 527 (827)
+++|+ .+..|++|.
T Consensus 778 lva~~-----~dG~I~i~~ 791 (793)
T PLN00181 778 LVAAN-----STGNIKILE 791 (793)
T ss_pred EEEec-----CCCcEEEEe
Confidence 66663 234566664
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.88 E-value=5.1e-21 Score=191.49 Aligned_cols=282 Identities=14% Similarity=0.138 Sum_probs=225.3
Q ss_pred ccccccceEEEeecCC--CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceecccc
Q 003356 127 PFAEKGLSVSNIVSDN--KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK 204 (827)
Q Consensus 127 ~~~~~~~~v~~~~~d~--~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~ 204 (827)
.+.++.+-|.|++.++ +.++.|+.|+++.+|+. ....-. ..+
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDl--atg~Lk----------------------------------ltl 189 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDL--ATGQLK----------------------------------LTL 189 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEc--ccCeEE----------------------------------Eee
Confidence 3577888888887665 67888889999998543 332211 112
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeE
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVV 280 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v 280 (827)
.++...+..++ +++---+++++..|+.++-||+...+.+ -||-.+|. ++.+|.-+.|++|+.|.++
T Consensus 190 tGhi~~vr~va----------vS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~ 259 (460)
T KOG0285|consen 190 TGHIETVRGVA----------VSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTI 259 (460)
T ss_pred cchhheeeeee----------ecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceE
Confidence 23344455444 7777788899999999999999876544 68888886 9999999999999999999
Q ss_pred EEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecC
Q 003356 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (827)
Q Consensus 281 ~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp 360 (827)
||||+.+ ...+.++.+ |+++|.++.+.|-.-.+++|+.|++|++||+..|+.++++..| ..+|.+++.+|
T Consensus 260 RvWDiRt-r~~V~~l~G--------H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h-kksvral~lhP 329 (460)
T KOG0285|consen 260 RVWDIRT-RASVHVLSG--------HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH-KKSVRALCLHP 329 (460)
T ss_pred EEeeecc-cceEEEecC--------CCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc-cceeeEEecCC
Confidence 9999998 788889999 9999999999997677899999999999999999999999887 77899999999
Q ss_pred CCCCCccceeecc--eeEEEccCCceEEEEecCCcceEEEEec--ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCc
Q 003356 361 NQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE 436 (827)
Q Consensus 361 ~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~ 436 (827)
.. ..+++++ .++.|+.-.+..+..+.+|..-+..++. ...+++|+..+.+..|+...+-+-..
T Consensus 330 ~e----~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~--------- 396 (460)
T KOG0285|consen 330 KE----NLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQR--------- 396 (460)
T ss_pred ch----hhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCccccc---------
Confidence 87 7788887 8999999888888888888888877776 66889999999999999776654100
Q ss_pred ceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 437 LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 437 ~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
-+.+..|.++. ...-|.+.+|+..|..|++|..|.+| +|.-
T Consensus 397 --~~t~vqpGSl~-sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 397 --GQTIVQPGSLE-SEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred --ccccccCCccc-cccceeEEeecccCceEEeccCCcceEEEec
Confidence 01122233333 34458999999999999999999999 9854
No 48
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.7e-21 Score=196.70 Aligned_cols=223 Identities=15% Similarity=0.120 Sum_probs=172.4
Q ss_pred EEEEeCCcEEEEeeccCccccceeecccee----cCCCCcE-EEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEee
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v-~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~ 298 (827)
+.++||.+.+++++.+..+++||..++... .++...+ +++|.|||..+++|+.|+++..||.+. .....+++.
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg--n~~~~W~gv 352 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG--NILGNWEGV 352 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc--chhhccccc
Confidence 346677777777777667778887776554 3344444 499999999999999999999999974 444445442
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---ee
Q 003356 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (827)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i 375 (827)
..-.|.+++.++||+.+.+...|..+++++.........+..+ ..+++...|.++ ...+... .+
T Consensus 353 -------r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~--~~its~~iS~d~----k~~LvnL~~qei 419 (519)
T KOG0293|consen 353 -------RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE--QPITSFSISKDG----KLALVNLQDQEI 419 (519)
T ss_pred -------ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc--CceeEEEEcCCC----cEEEEEcccCee
Confidence 2346999999999999999999999999999876554333333 578999999888 5554333 78
Q ss_pred EEEccCCceEEEEecCCcceEEE----Eec--ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeec
Q 003356 376 MQWDEYGYRLYAIEEGSSERVLI----FSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (827)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~~----~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~ 449 (827)
..||.+...++....||+..-+. |.- .+.+++||.|+.+++|+...+.- ...+.
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl--------------------l~~Ls 479 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL--------------------LAVLS 479 (519)
T ss_pred EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce--------------------eEeec
Confidence 89999987777777788766433 333 36789999999999999766654 56788
Q ss_pred cCCCcEEEEEEcCC-CCEEEEEeCCceE-EEEcC
Q 003356 450 SQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIR 481 (827)
Q Consensus 450 ~~~~~I~~va~Spd-G~~lavag~dg~i-iwd~~ 481 (827)
||...|.+|+|+|. -..+|+||+||+| ||...
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999999996 5689999999999 99764
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=6.9e-20 Score=192.92 Aligned_cols=268 Identities=19% Similarity=0.295 Sum_probs=206.7
Q ss_pred CCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccc---eecCCCCcE-EEEEcCCCCEEEEEecCCeEE
Q 003356 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTRRGVVE 281 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v-~va~sp~~~lla~g~~dg~v~ 281 (827)
.+...|.++. ++++|+.++++..++.+.+|+....+ ...+|...+ .+.|+|+++.+++++.||.|+
T Consensus 7 ~h~~~i~~~~----------~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 76 (289)
T cd00200 7 GHTGGVTCVA----------FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR 76 (289)
T ss_pred ccCCCEEEEE----------EcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence 4556677776 56667777777777777788776542 235677777 499999999999999999999
Q ss_pred EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCC
Q 003356 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (827)
Q Consensus 282 vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (827)
+|++.+ .+....+.. |.+.|.+++|+|+++++++++.|+.+++|++..++....+..| ...+.++.++|+
T Consensus 77 i~~~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 146 (289)
T cd00200 77 LWDLET-GECVRTLTG--------HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSPD 146 (289)
T ss_pred EEEcCc-ccceEEEec--------cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-CCcEEEEEEcCc
Confidence 999987 666667766 8889999999999999999998999999999988888888766 567999999998
Q ss_pred CCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCC
Q 003356 362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (827)
Q Consensus 362 ~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~ 435 (827)
+ ..++++. .+.+|+..+.+.......+...+..+.+ ++.+++++.++.+++|++..+..
T Consensus 147 ~----~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----------- 211 (289)
T cd00200 147 G----TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC----------- 211 (289)
T ss_pred C----CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce-----------
Confidence 6 6666554 7899999988888777777777765555 55788888899999999755332
Q ss_pred cceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEE-eeCCccceEEEEEEEEEEeC--CEEEE
Q 003356 436 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLG--KIIVV 511 (827)
Q Consensus 436 ~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~-~f~~~~~e~~~~v~gl~W~~--~~li~ 511 (827)
...+..|..++.+++|+|++.++++++.||.+ +||+.+++-. .+. .....+..+.|.. ..+++
T Consensus 212 ---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 212 ---------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS----GHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred ---------ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc----ccCCcEEEEEECCCCCEEEE
Confidence 33444778899999999999999999889999 9999876532 221 1222477888976 46665
Q ss_pred EEEeeCCCcEEEEEe
Q 003356 512 CNYIDSSNTYELLFY 526 (827)
Q Consensus 512 ~~~~~~~~~~~lrly 526 (827)
++ .+..+++|
T Consensus 279 ~~-----~d~~i~iw 288 (289)
T cd00200 279 GS-----ADGTIRIW 288 (289)
T ss_pred ec-----CCCeEEec
Confidence 52 22457766
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.87 E-value=2e-20 Score=183.92 Aligned_cols=221 Identities=12% Similarity=0.177 Sum_probs=178.7
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEE
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
.+|++.+. +.|+|+|..+|+|+.|..|.+|++....+..-++++ |+++|..+.|++||+.|++++.|.+++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg--------HsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG--------HSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc--------ccceeEeeeeccCCCEEEEecCCceEE
Confidence 78999988 999999999999999999999998765667777887 999999999999999999999999999
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeee
Q 003356 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL 406 (827)
Q Consensus 333 vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~ 406 (827)
.||+.+|+.....++| .+-|+++..+..+ .+.+.+|+ ++++||.+..+.+.+.+. +-++.++.| +..+.
T Consensus 116 ~wD~~tG~~~rk~k~h-~~~vNs~~p~rrg---~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGH-TSFVNSLDPSRRG---PQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVI 190 (338)
T ss_pred EEecccceeeehhccc-cceeeecCccccC---CeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEeccccccee
Confidence 9999999999999988 5667777633333 25566776 999999998777766533 446677777 77889
Q ss_pred ecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcC----
Q 003356 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR---- 481 (827)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~---- 481 (827)
+|+-|+.+++|++.+.+. ...+.+|..+|+.++.||+|.++.+-+-|.++ +||++
T Consensus 191 sggIdn~ikvWd~r~~d~--------------------~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDG--------------------LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred eccccCceeeeccccCcc--------------------eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 999999999999887766 45678999999999999999999999999999 99985
Q ss_pred CCe-EEeeCCccceEEEEEEEEEEeCC
Q 003356 482 QKK-WRVFGDITQEQKIQSKGLLWLGK 507 (827)
Q Consensus 482 t~~-w~~f~~~~~e~~~~v~gl~W~~~ 507 (827)
..| -+.|....+..+.......|..+
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCC
Confidence 233 44553332222222335677644
No 51
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.87 E-value=5.1e-20 Score=185.43 Aligned_cols=282 Identities=14% Similarity=0.158 Sum_probs=204.0
Q ss_pred cccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccC
Q 003356 126 LPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (827)
Q Consensus 126 ~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~ 205 (827)
..|..+..+|.+++.+++.=+++|..|.=+.+.|+....... ..+.
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~----------------------------------~elt 103 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA----------------------------------GELT 103 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce----------------------------------eEec
Confidence 346778888988887765444444444444455774433211 2345
Q ss_pred CCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee----cCCCCcEEEEEcCCCCEEEEEecCCeEE
Q 003356 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVGTRRGVVE 281 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~va~sp~~~lla~g~~dg~v~ 281 (827)
+++..|+++. |+.||.+++++.-++.+++|...++... ..-.+..++.|+|.+..|+.|+.||.+-
T Consensus 104 gHKDSVt~~~----------FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 104 GHKDSVTCCS----------FSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW 173 (399)
T ss_pred CCCCceEEEE----------EccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence 6777787766 8889999998888888888887765432 1334566799999999999999999999
Q ss_pred EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCC
Q 003356 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (827)
Q Consensus 282 vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (827)
+|.+.+ ....+.+.+ |..++++=.|.|||+.+++|+.||+|++|+.++++.++.+.+........+.++..
T Consensus 174 mw~ip~-~~~~kv~~G--------h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~ 244 (399)
T KOG0296|consen 174 MWQIPS-QALCKVMSG--------HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLA 244 (399)
T ss_pred EEECCC-cceeeEecC--------CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccc
Confidence 999998 677788888 99999999999999999999999999999999999998887432222334444444
Q ss_pred CCCCccceeecc---eeEEEccCCceEEEEecC--------Ccc---eEEEEec---ceeeeecccCCCeeeeEEEEcCC
Q 003356 362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG--------SSE---RVLIFSF---GKCCLNRGVSGMTYARQVIYGED 424 (827)
Q Consensus 362 ~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~--------~~~---~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~ 424 (827)
+ ..+.+|. ....-+..+++.+....+ +.. .|-.+.+ -+.++.|+.||++.+||+....-
T Consensus 245 ~----~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~ 320 (399)
T KOG0296|consen 245 G----STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL 320 (399)
T ss_pred c----ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh
Confidence 4 4444443 344444455555554442 122 2222222 44578899999999999765443
Q ss_pred eEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEE
Q 003356 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (827)
Q Consensus 425 ~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~ 486 (827)
.....|..+|..+.|-+ -.+|++++.||.+ .||.+||+.+
T Consensus 321 ---------------------R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 321 ---------------------RHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred ---------------------heeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence 34556888899999998 7899999999999 9999999865
No 52
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=3.8e-21 Score=185.75 Aligned_cols=265 Identities=12% Similarity=0.160 Sum_probs=210.0
Q ss_pred ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 253 ~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
+.||+.++. +.+|.+|.+|.+++.|.+..||-..+ ++.+-+..+ |+|+|+||...-+.++|++|+.|.++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~G--------HtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDG--------HTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecC--------CCceEEEEEecCCcceeeecccccee
Confidence 478999998 99999999999999999999998877 888889998 99999999999999999999999999
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeec--------ceeEEEccC-------CceEEEEecCCcceE
Q 003356 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--------TSMMQWDEY-------GYRLYAIEEGSSERV 396 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg--------~~i~~W~~~-------~~~l~~~~~~~~~~v 396 (827)
++||+.+|+++.+++-. ..|..+.|++++ ..++.. +.+-+++.. +.+.+..+..+...+
T Consensus 77 kLWDv~tGk~la~~k~~--~~Vk~~~F~~~g----n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 77 KLWDVETGKQLATWKTN--SPVKRVDFSFGG----NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred EEEEcCCCcEEEEeecC--CeeEEEeeccCC----cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 99999999999988764 578999999988 333221 245556554 444444444444444
Q ss_pred --EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCC
Q 003356 397 --LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (827)
Q Consensus 397 --~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~d 473 (827)
..+.+ ++.+++|..||.+..|++.++.. +...-..|+..|..+.+|+|+.++++|++|
T Consensus 151 t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~-------------------~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 151 TSALWGPLGETIIAGHEDGSISIYDARTGKE-------------------LVDSDEEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred eeeeecccCCEEEEecCCCcEEEEEcccCce-------------------eeechhhhccccccccccCCcceEEecccC
Confidence 44555 89999999999999999987755 244455688899999999999999999999
Q ss_pred ceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeCC-CCCccceEEEEecCCccEEEEc
Q 003356 474 GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLLAKPIVMDV 551 (827)
Q Consensus 474 g~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~~-~l~~~~~~~~~~l~~~~~~l~~ 551 (827)
.+. +||+.+-. -++-|..+ +++.+.+....+ .+++..
T Consensus 212 ttakl~D~~tl~-------------------------------------v~Kty~te~PvN~aaisP~~d----~VilgG 250 (327)
T KOG0643|consen 212 TTAKLVDVRTLE-------------------------------------VLKTYTTERPVNTAAISPLLD----HVILGG 250 (327)
T ss_pred ccceeeecccee-------------------------------------eEEEeeecccccceecccccc----eEEecC
Confidence 999 99986532 13344444 444443332222 577888
Q ss_pred cCCEEEEEEcC-----ceEEEEEEEEecccCCCCCCceEEEEEEEEeec
Q 003356 552 YEDYILVTYRP-----FDVHIFHVKLFGELTPSTTPDLQLSTVRELSIM 595 (827)
Q Consensus 552 ~~~~llV~~~~-----~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (827)
++|..-|++++ ++.+.||+++++|+ +....++++++.++++
T Consensus 251 GqeA~dVTTT~~r~GKFEArFyh~i~eEEi---grvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 251 GQEAMDVTTTSTRAGKFEARFYHLIFEEEI---GRVKGHFGPINSVAFH 296 (327)
T ss_pred CceeeeeeeecccccchhhhHHHHHHHHHh---ccccccccCcceeEEC
Confidence 88999997765 68889999999987 7778899999999976
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.87 E-value=1.4e-20 Score=185.03 Aligned_cols=242 Identities=13% Similarity=0.120 Sum_probs=193.0
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecc----ceecCCCCcEE-EEEcCCCCEEEEEecCCe
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI----DKELGSGDAVC-ASIAPEQQILAVGTRRGV 279 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~v~-va~sp~~~lla~g~~dg~ 279 (827)
..+++.|..+. |+|||..+++++.|..+.+|+...- -..++|..+|. +.|++|++.|.+++.|.+
T Consensus 44 ~gh~geI~~~~----------F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 44 PGHKGEIYTIK----------FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred CCCcceEEEEE----------ECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCce
Confidence 45566676655 8899999999999999999985432 12379999999 999999999999999999
Q ss_pred EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCC-CEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeee
Q 003356 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (827)
Q Consensus 280 v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg-~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~ 358 (827)
|+.||+.+ ++.++..++ |++-|++|.-+--| .++.+|+.|+++++||+.....+.++.. ...++++.|
T Consensus 114 v~~wD~~t-G~~~rk~k~--------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~--kyqltAv~f 182 (338)
T KOG0265|consen 114 VRGWDAET-GKRIRKHKG--------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN--KYQLTAVGF 182 (338)
T ss_pred EEEEeccc-ceeeehhcc--------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc--ceeEEEEEe
Confidence 99999999 899999998 99999999844444 4778999999999999998888777754 346888888
Q ss_pred cCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEE--ec-ceeeeecccCCCeeeeEEEE--cCCe-EEEE
Q 003356 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIY--GEDR-LLVV 429 (827)
Q Consensus 359 sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~--~~-~~~~~s~~~d~~~~~w~~~~--~~~~-~~~~ 429 (827)
...+ ....+|. .+++|++.......++.||.+.|..+ +. +..+.+-+.|.++++|++.- ...| +.++
T Consensus 183 ~d~s----~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if 258 (338)
T KOG0265|consen 183 KDTS----DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF 258 (338)
T ss_pred cccc----cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe
Confidence 8776 5566665 67999999999999999999999444 44 88999999999999999864 2333 3333
Q ss_pred ecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEE
Q 003356 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (827)
Q Consensus 430 ~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~ 486 (827)
.|.. .+-......++|||+++++..|+.|..+ +||..+++..
T Consensus 259 ~g~~---------------hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l 301 (338)
T KOG0265|consen 259 QGHI---------------HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL 301 (338)
T ss_pred ecch---------------hhhhhhcceeeccCCCCccccccccceEEEeecccccEE
Confidence 3311 0111234678999999999999999999 9999887643
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.86 E-value=4e-20 Score=186.89 Aligned_cols=265 Identities=17% Similarity=0.198 Sum_probs=201.5
Q ss_pred EEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEE
Q 003356 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (827)
Q Consensus 135 v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 214 (827)
|+++...++.|+.|+.||.+++|+-.|..... ..++.+.|.++
T Consensus 108 VSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~-------------------------------------~~Ght~~ik~v 150 (423)
T KOG0313|consen 108 VSSVKGASKWILTGSYDGTSRIWDLKGKSIKT-------------------------------------IVGHTGPIKSV 150 (423)
T ss_pred hhhhcccCceEEEeecCCeeEEEecCCceEEE-------------------------------------EecCCcceeee
Confidence 44554557899999999999986554432211 12344455544
Q ss_pred EEcCCcceEEEEEeCC--cEEEEeeccCccccceeecccee-------cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEE
Q 003356 215 ELCLPMRLLFVLYSNG--QLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYD 284 (827)
Q Consensus 215 ~~~~~~~~~~~~s~dG--~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~ 284 (827)
. ++.+|. ..+++++.|.++++|....++.. .||..+|- ++.+++|..+++|+.|.++.+|+
T Consensus 151 ~---------~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs 221 (423)
T KOG0313|consen 151 A---------WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWS 221 (423)
T ss_pred E---------EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecc
Confidence 3 223332 26778888999998887655432 59999987 99999999999999999999999
Q ss_pred cCCCC------------------------cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 003356 285 LAESA------------------------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 285 ~~~~~------------------------~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~ 340 (827)
..... .++-++. +|+++|.++.|++ ...+.+++.|.+|++||+.++.
T Consensus 222 ~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~--------GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 222 VETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE--------GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred cCCCccccccccchhhhhhhhhhhcccccCceEEec--------ccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 33210 0122233 5999999999998 6788999999999999999999
Q ss_pred eEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCce---EEEEecCCcceEEEEec----ceeeeeccc
Q 003356 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR---LYAIEEGSSERVLIFSF----GKCCLNRGV 410 (827)
Q Consensus 341 l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~---l~~~~~~~~~~v~~~~~----~~~~~s~~~ 410 (827)
+..++... .+..++.++|.. ..+++|+ .+++||++++. .-..+.+|+..|-++.+ .-.+++++.
T Consensus 293 ~~~~~~~~--ksl~~i~~~~~~----~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 293 LKSTLTTN--KSLNCISYSPLS----KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY 366 (423)
T ss_pred ceeeeecC--cceeEeeccccc----ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEec
Confidence 98888763 578999999987 8888887 78999997543 34566789888855544 557899999
Q ss_pred CCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
|+++++||+...... .....+|+..|.++.|+ +|.+|++||.|..+ ++..
T Consensus 367 D~t~klWDvRS~k~p-------------------lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 367 DNTVKLWDVRSTKAP-------------------LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCeEEEEEeccCCCc-------------------ceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 999999999887753 23566899999999997 46789999999998 7753
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.4e-20 Score=174.66 Aligned_cols=250 Identities=19% Similarity=0.230 Sum_probs=199.3
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEE
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
.++..++. +.||-||++..+++.|.+|++|+... +.++++..+ |...|..++.+.|+..+|+|+.|..+.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~liktYsg--------hG~EVlD~~~s~Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GALIKTYSG--------HGHEVLDAALSSDNSKFASCGGDKAVQ 84 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccc-cceeeeecC--------CCceeeeccccccccccccCCCCceEE
Confidence 56788998 99999999999999999999999988 899999999 999999999999999999999999999
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCC--ceEEEEecCCcceEEEEec-ceeee
Q 003356 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG--YRLYAIEEGSSERVLIFSF-GKCCL 406 (827)
Q Consensus 333 vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~--~~l~~~~~~~~~~v~~~~~-~~~~~ 406 (827)
+||+.+|+....+++| ...|+.++|+.+. ..+++|+ +++.||-.+ .+.++++....+.|..+.. ...++
T Consensus 85 vwDV~TGkv~Rr~rgH-~aqVNtV~fNees----SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIv 159 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGH-LAQVNTVRFNEES----SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIV 159 (307)
T ss_pred EEEcccCeeeeecccc-cceeeEEEecCcc----eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEE
Confidence 9999999999999999 6789999998877 7888887 899999764 5677787777888988888 77899
Q ss_pred ecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeE
Q 003356 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (827)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w 485 (827)
+|+.||+++.+++..+.. ...|.+| ||++++||+||+...+++-|+++ +-|-+||+.
T Consensus 160 aGS~DGtvRtydiR~G~l--------------------~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTL--------------------SSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred eeccCCcEEEEEeeccee--------------------ehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 999999999999988765 4456665 89999999999999999999999 999999963
Q ss_pred E-ee-CCccceEEEEEEEEEEeC--CEEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEecCCccEEEE
Q 003356 486 R-VF-GDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD 550 (827)
Q Consensus 486 ~-~f-~~~~~e~~~~v~gl~W~~--~~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~~~~~~l~ 550 (827)
- .+ +-..+ ++.+. .+..+ .+++.| . .+..+.+|... +..++...+.++.++..+
T Consensus 218 L~sYkGhkn~--eykld-c~l~qsdthV~sg--S---EDG~Vy~wdLv---d~~~~sk~~~~~~v~v~d 275 (307)
T KOG0316|consen 218 LKSYKGHKNM--EYKLD-CCLNQSDTHVFSG--S---EDGKVYFWDLV---DETQISKLSVVSTVIVTD 275 (307)
T ss_pred HHHhcccccc--eeeee-eeecccceeEEec--c---CCceEEEEEec---cceeeeeeccCCceeEEe
Confidence 1 11 11122 22332 23332 233433 2 22446677553 344555556666564444
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.7e-20 Score=177.85 Aligned_cols=226 Identities=12% Similarity=0.147 Sum_probs=173.9
Q ss_pred CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcce
Q 003356 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (827)
Q Consensus 143 ~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (827)
+.+++++.||.+++|+.. +...+. ..+++++..|.+++|..
T Consensus 74 ~~~~~a~GDGSLrl~d~~-~~s~Pi----------------------------------~~~kEH~~EV~Svdwn~---- 114 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLT-MPSKPI----------------------------------HKFKEHKREVYSVDWNT---- 114 (311)
T ss_pred ceEEEEecCceEEEeccC-CCCcch----------------------------------hHHHhhhhheEEecccc----
Confidence 568888999999996521 111111 23467788888888665
Q ss_pred EEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCCcceEEEEe
Q 003356 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
.+++.+++++-|+++|+|+...++.. .||...+. ++||| ...++|+++.||++++||++..++.+. +..
T Consensus 115 -----~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a 188 (311)
T KOG0277|consen 115 -----VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA 188 (311)
T ss_pred -----ccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe
Confidence 45677778888999999998876544 78999998 99999 578999999999999999998554444 777
Q ss_pred ecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCe-eEEEeccccccceeeeeecCCCCCCccceeeccee
Q 003356 298 YDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSM 375 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~~-l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i 375 (827)
|...+.||.|+. |-+.|++|+-|+.|++||+..-+ .+..|.+| .-.|..+.|||..
T Consensus 189 --------h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~Sph~------------- 246 (311)
T KOG0277|consen 189 --------HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKVKFSPHH------------- 246 (311)
T ss_pred --------ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEEecCcch-------------
Confidence 999999999998 78899999999999999996532 34455454 2334444444432
Q ss_pred EEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcE
Q 003356 376 MQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (827)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I 455 (827)
...++|+++|.++++|+...++. +..++..|..-+
T Consensus 247 --------------------------~~lLaSasYDmT~riw~~~~~ds-------------------~~e~~~~HtEFv 281 (311)
T KOG0277|consen 247 --------------------------ASLLASASYDMTVRIWDPERQDS-------------------AIETVDHHTEFV 281 (311)
T ss_pred --------------------------hhHhhhccccceEEecccccchh-------------------hhhhhhccceEE
Confidence 34567899999999999876555 245677888889
Q ss_pred EEEEEcC-CCCEEEEEeCCceE-EEEc
Q 003356 456 QHVAASK-DGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 456 ~~va~Sp-dG~~lavag~dg~i-iwd~ 480 (827)
..+.||+ ++.++|+.|.|+++ +|+.
T Consensus 282 ~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 282 CGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eccccccccCceeeecccccceeeecc
Confidence 9999987 58899999999999 9984
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.4e-19 Score=197.61 Aligned_cols=227 Identities=11% Similarity=0.117 Sum_probs=191.0
Q ss_pred EEeCCcEEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCC
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~ 301 (827)
|.|..-.++++-..+.|++||-.-+.. +.+|.++|+ ++|+|++.++++|+.|-+|+||+.++ .+++.++.+
T Consensus 17 FHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-rrclftL~G---- 91 (1202)
T KOG0292|consen 17 FHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-RRCLFTLLG---- 91 (1202)
T ss_pred cCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-ceehhhhcc----
Confidence 666677777777888899999775543 378999999 99999999999999999999999998 889999998
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEE
Q 003356 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW 378 (827)
Q Consensus 302 ~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W 378 (827)
|-..|+.+.|++.--.+.|+++|.||+||+..++.+++.+.+| ...|-+..|+|.. +.++|++ ++++|
T Consensus 92 ----HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhptE----DlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 92 ----HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHPTE----DLIVSASLDQTVRVW 162 (1202)
T ss_pred ----ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCCcc----ceEEEecccceEEEE
Confidence 9999999999999999999999999999999999999999999 7789999999988 8889998 99999
Q ss_pred ccCCce---------------------EE--------EEecCCcceEE--EEec-ceeeeecccCCCeeeeEEEEcCCeE
Q 003356 379 DEYGYR---------------------LY--------AIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRL 426 (827)
Q Consensus 379 ~~~~~~---------------------l~--------~~~~~~~~~v~--~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~ 426 (827)
|..+-+ ++ .+++||+..|. +|.+ -..++||+.|..+++|.+....-
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-- 240 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-- 240 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc--
Confidence 986521 11 23456777773 4444 46778888888888887654322
Q ss_pred EEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 427 ~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
|+ ..+..+|..+|.++-|+|....+.+.|.|+++ +||+..++
T Consensus 241 ------------WE----vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 241 ------------WE----VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred ------------ee----ehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 32 24567999999999999999999999999999 99997654
No 58
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=179.45 Aligned_cols=287 Identities=14% Similarity=0.149 Sum_probs=192.1
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEe-cCcEEEEEEEEec
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQIT 99 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t-~dg~l~l~~v~~~ 99 (827)
...++||.||+.||++ .|++|+||+++ .-. ... .|..+.--+++.-+.++|+||.+.+++.- ..+.|++|.+.+.
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~-DF~-~~e-Hr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~ 165 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVR-DFE-NKE-HRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKK 165 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecc-hhh-hhh-hhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeec
Confidence 4568999999999998 67899999995 321 111 23333333678889999999999877755 4458999999765
Q ss_pred CceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCccc
Q 003356 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (827)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i 179 (827)
....+.... ..+.++++.-+..+ .. .. .+++..+..|+.++.|..|.+|+..|+..+..
T Consensus 166 ~dG~~~~~~----v~~D~~~f~~kh~v--~~--i~-iGiA~~~k~imsas~dt~i~lw~lkGq~L~~i------------ 224 (420)
T KOG2096|consen 166 TDGSGSHHF----VHIDNLEFERKHQV--DI--IN-IGIAGNAKYIMSASLDTKICLWDLKGQLLQSI------------ 224 (420)
T ss_pred ccCCCCccc----ccccccccchhccc--ce--EE-EeecCCceEEEEecCCCcEEEEecCCceeeee------------
Confidence 543221100 11111211111111 11 11 35566678899999999998865554322111
Q ss_pred ceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccc--------
Q 003356 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-------- 251 (827)
Q Consensus 180 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~-------- 251 (827)
.-....+..++++|||+.++++.-.-.+++|+..-.+
T Consensus 225 -----------------------------------dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~ 269 (420)
T KOG2096|consen 225 -----------------------------------DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVK 269 (420)
T ss_pred -----------------------------------ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhh
Confidence 1111124557899999999998888888999876322
Q ss_pred ---eecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCC---CcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEE
Q 003356 252 ---KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES---ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (827)
Q Consensus 252 ---~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~---~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Las 324 (827)
.+.||..+|. .+|||+.+.+++.+.||++|+||++-. ++-.+.++....+....-..++ -++.||.|+.||.
T Consensus 270 rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 270 RVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAV 348 (420)
T ss_pred hhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEe
Confidence 2379999998 999999999999999999999998631 1111122221112222223344 7999999999999
Q ss_pred EEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 003356 325 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 325 g~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
+.. .+++++....+...-+++..+...+++++|+++| ..+++..
T Consensus 349 s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g----~~~atcG 392 (420)
T KOG2096|consen 349 SFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDG----KYIATCG 392 (420)
T ss_pred ecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCC----cEEeeec
Confidence 887 7899999998887777776446679999999988 6666543
No 59
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=1.9e-19 Score=173.73 Aligned_cols=247 Identities=15% Similarity=0.239 Sum_probs=185.9
Q ss_pred EEEEeCCcEEEEeeccCccccceeecccee-----cCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEcCCCCcceEEEE
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVS 296 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~-va~sp~-~~lla~g~~dg~v~vw~~~~~~~~~~~l~ 296 (827)
+++..||..+++++.++++++|+....... .+|.+.+- ++++|. ..++|+++.|.+|++||+.. ++++..+.
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~-~k~~~~i~ 104 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS-GKCTARIE 104 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc-CcEEEEee
Confidence 347789999999999999999988765332 67888777 888875 57999999999999999998 88887766
Q ss_pred eecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeec-c--
Q 003356 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-- 373 (827)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg-~-- 373 (827)
. ++.-.-+.|+|||.++|++..|..|.+.|....+.+.+.+.. -.++.+.|+.++ +...+-+| .
T Consensus 105 ~---------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~n--d~Fflt~GlG~v 171 (313)
T KOG1407|consen 105 T---------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSN--DLFFLTNGLGCV 171 (313)
T ss_pred c---------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--ceeeeeeecCCC--CEEEEecCCceE
Confidence 5 444566899999999999999999999999888776655432 345666776443 11233344 1
Q ss_pred eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeecc
Q 003356 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (827)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~ 450 (827)
.++.|- .-+.+..++.|....+++.| ||++++|+.|..+.+||+..-- +...+..
T Consensus 172 ~ILsyp--sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi--------------------C~R~isR 229 (313)
T KOG1407|consen 172 EILSYP--SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI--------------------CERCISR 229 (313)
T ss_pred EEEecc--ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh--------------------hheeecc
Confidence 555554 55667778888877655555 9999999999999999964322 2456677
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe--EEeeCCccceEEEEEEEEEEeCCEEEEE
Q 003356 451 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKIIVVC 512 (827)
Q Consensus 451 ~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~--w~~f~~~~~e~~~~v~gl~W~~~~li~~ 512 (827)
+.||||.++||-||++||+|++|..| |=+++||. |+.- .+ .....++|..+..+.+
T Consensus 230 ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~----~~--~~t~tVAWHPk~~LLA 288 (313)
T KOG1407|consen 230 LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP----CE--GPTFTVAWHPKRPLLA 288 (313)
T ss_pred ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee----cc--CCceeEEecCCCceee
Confidence 89999999999999999999999999 99999986 3221 11 1122579997654444
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.85 E-value=4.2e-21 Score=189.27 Aligned_cols=258 Identities=14% Similarity=0.223 Sum_probs=200.7
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeecccee-----------cCCCCcE-EEEEcCCCCEEEEEecCCeEEEEEcCCCC
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA 289 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-----------~~h~~~v-~va~sp~~~lla~g~~dg~v~vw~~~~~~ 289 (827)
-.+.|+|||+++++++-|+-+.+|+..+++.. .-+.++| |+.||.|...+|+|+.||.|++|.+.+ +
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G 295 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-G 295 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-c
Confidence 45779999999999999999999998877532 1256666 499999999999999999999999999 8
Q ss_pred cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce
Q 003356 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (827)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l 369 (827)
.+++.+.. +|+..|+|+.||.|+..+.+++.|.++++--+.+|+++..+++| .+.|+...|.++| ..+
T Consensus 296 ~ClRrFdr-------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-sSyvn~a~ft~dG----~~i 363 (508)
T KOG0275|consen 296 QCLRRFDR-------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-SSYVNEATFTDDG----HHI 363 (508)
T ss_pred hHHHHhhh-------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-cccccceEEcCCC----CeE
Confidence 99988773 39999999999999999999999999999999999999999999 7789999999999 777
Q ss_pred eecc---eeEEEccCCceEEEEecCCc--ceE---EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEE
Q 003356 370 MSGT---SMMQWDEYGYRLYAIEEGSS--ERV---LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (827)
Q Consensus 370 ~sg~---~i~~W~~~~~~l~~~~~~~~--~~v---~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~ 440 (827)
++++ ++++|+..+.+++.+++... -.| .-+.- ...++.++..+++.+-++ ..+
T Consensus 364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~--qGQ---------------- 425 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM--QGQ---------------- 425 (508)
T ss_pred EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec--cce----------------
Confidence 7776 89999999999988876432 223 22222 445666666666654332 111
Q ss_pred Eeeeceeec---cCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEEee
Q 003356 441 HLNLPVSYI---SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYID 516 (827)
Q Consensus 441 ~~~~p~~~~---~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~ 516 (827)
+..++. ...+...+++.||.|.+++..|.|+.. .+++.+|+...+-.. +|+ .|.|+....+--+.+.|.+
T Consensus 426 ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-hEk--dvIGl~HHPHqNllAsYsE 499 (508)
T KOG0275|consen 426 ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-HEK--DVIGLTHHPHQNLLASYSE 499 (508)
T ss_pred ---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-ccc--cccccccCcccchhhhhcc
Confidence 222222 233456788999999999999999999 999999987665433 233 3678887766544455554
No 61
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.85 E-value=7e-20 Score=180.09 Aligned_cols=299 Identities=12% Similarity=0.150 Sum_probs=201.9
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEe----cCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--e
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI----TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--V 139 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~ 139 (827)
+.++..+.+|||||+.+|+|+.|-.|+|.|++. ........+......++- ..+-.+...|.++ .
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvI---------RTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVI---------RTLYDHVDEVNDLDFH 181 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceE---------eehhhccCcccceeec
Confidence 457778899999999999999999999999972 111111111111111111 1122333445554 4
Q ss_pred cCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCC
Q 003356 140 SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (827)
Q Consensus 140 ~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 219 (827)
+....|+.++.|++++.++......... .........+.++.
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA----------------------------------~K~~qd~~~vrsiS---- 223 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRA----------------------------------FKVFQDTEPVRSIS---- 223 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHH----------------------------------HHHhhccceeeeEe----
Confidence 4445677788999999987753322110 00111223455555
Q ss_pred cceEEEEEeCCcEEEEeeccCccccceeecccee------cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcce
Q 003356 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLI 292 (827)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~ 292 (827)
|.|.|..++++.+..+++++|..+.+++ .+|.++++ +.+|+.+++-++|+.||.|++||--. ++++
T Consensus 224 ------fHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS-~rCv 296 (430)
T KOG0640|consen 224 ------FHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS-NRCV 296 (430)
T ss_pred ------ecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecccc-HHHH
Confidence 7889999999999999999999988776 56899998 99999999999999999999999766 7888
Q ss_pred EEEEeecCCCCCCCCC-CeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceee
Q 003356 293 RTVSLYDWGYSMDDTG-PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (827)
Q Consensus 293 ~~l~~~~~~~~~~h~~-~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~s 371 (827)
+++.. +|.| .|.+..|+.+|+++.+++.|..+++|.+.+++.+.+..+.|.. +. +.+.
T Consensus 297 ~t~~~-------AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~t----------gr---q~~r- 355 (430)
T KOG0640|consen 297 RTIGN-------AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTT----------GR---QKHR- 355 (430)
T ss_pred HHHHh-------hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcc----------cc---hhhh-
Confidence 87754 2654 6999999999999999999999999999999998887765331 10 0000
Q ss_pred cceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccC
Q 003356 372 GTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (827)
Q Consensus 372 g~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~ 451 (827)
+-.+++ |.+.-+. .+ --..+.+..|+..+.+.. -.--++|
T Consensus 356 --tqAvFN------------htEdyVl-~p------DEas~slcsWdaRtadr~-------------------~l~slgH 395 (430)
T KOG0640|consen 356 --TQAVFN------------HTEDYVL-FP------DEASNSLCSWDARTADRV-------------------ALLSLGH 395 (430)
T ss_pred --hhhhhc------------CccceEE-cc------ccccCceeeccccchhhh-------------------hhcccCC
Confidence 000010 1111000 00 001123445666555442 1223589
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCceE-EEE
Q 003356 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (827)
Q Consensus 452 ~~~I~~va~SpdG~~lavag~dg~i-iwd 479 (827)
|++++.+.-||.+..+.++|.|-.+ .|-
T Consensus 396 n~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 396 NGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCceEEEeCCCCCceeeecccceeeeee
Confidence 9999999999999999999999988 774
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.85 E-value=1.1e-20 Score=186.49 Aligned_cols=222 Identities=13% Similarity=0.147 Sum_probs=171.3
Q ss_pred EEeCCcEEEEeeccCccccceeecccee----cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecC
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~ 300 (827)
|+.|...+++++.|+.+++|...++.++ ..|...++ +.||.|++.+.+++.|.++|+..+.. +++++.+++
T Consensus 271 FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~LKEfrG--- 346 (508)
T KOG0275|consen 271 FSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCLKEFRG--- 346 (508)
T ss_pred ecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-chhHHHhcC---
Confidence 7788888999999999999999998876 57888877 99999999999999999999999998 899999999
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccc-cceeeeeecCCCCCCccceeec--ceeEE
Q 003356 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-SSISSPIVKPNQDCKYEPLMSG--TSMMQ 377 (827)
Q Consensus 301 ~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~-~~v~s~~~sp~~~~~~~~l~sg--~~i~~ 377 (827)
|+..|+...|++||..+++++.||+|+||+..+..|+.+++..++ .+|+++..-|..+. ..++.. .++.+
T Consensus 347 -----HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe--h~iVCNrsntv~i 419 (508)
T KOG0275|consen 347 -----HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE--HFIVCNRSNTVYI 419 (508)
T ss_pred -----ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc--eEEEEcCCCeEEE
Confidence 999999999999999999999999999999999999999886433 46778777676532 111111 13333
Q ss_pred EccCCceEEEEecCC---cc-eE-EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccC
Q 003356 378 WDEYGYRLYAIEEGS---SE-RV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (827)
Q Consensus 378 W~~~~~~l~~~~~~~---~~-~v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~ 451 (827)
-+.. ++.+..+... .+ -| ..+++ |..+-..+.|+..+.+.+..|.- ..++..|
T Consensus 420 mn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L--------------------E~tl~Vh 478 (508)
T KOG0275|consen 420 MNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL--------------------ERTLPVH 478 (508)
T ss_pred Eecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce--------------------eeeeecc
Confidence 3333 3444443221 11 22 44555 66666667777666666555544 4556678
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCceE-EEE
Q 003356 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (827)
Q Consensus 452 ~~~I~~va~SpdG~~lavag~dg~i-iwd 479 (827)
...+..++-.|..+.+|+=+.||+. +|.
T Consensus 479 EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 479 EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccccCcccchhhhhcccchhhhcC
Confidence 8888899999999999999999999 884
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.84 E-value=8.8e-21 Score=197.27 Aligned_cols=246 Identities=16% Similarity=0.227 Sum_probs=184.3
Q ss_pred ecCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCc
Q 003356 253 ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (827)
Q Consensus 253 ~~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~ 330 (827)
+.||.+.|. +.|.| .+.||++|+.|+.|+||++-+.+++++++.+ |..+|.+++|+++|..+.+++-|+.
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g--------H~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG--------HRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc--------chhhhhhhhccccCCeeeeeeccee
Confidence 379999998 99999 8999999999999999999887889999999 9999999999999999999999999
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--eeEEEccCCceEEEEecCCcceEEEEec---ceee
Q 003356 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCC 405 (827)
Q Consensus 331 v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~ 405 (827)
+++||+++|++...+... ....++.|+|++ .+..++.++ .++.||.++++++.....|-+.|..+.| ++.+
T Consensus 282 lKlwDtETG~~~~~f~~~--~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLD--KVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred eeeeccccceEEEEEecC--CCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence 999999999998887653 457889999987 223444444 8999999999987777677777766666 9999
Q ss_pred eecccCCCeeeeEEEEcCCeEEEEec--CCCC------cceE-------------EEe-----eeceeeccCCCc--EEE
Q 003356 406 LNRGVSGMTYARQVIYGEDRLLVVQS--EDTD------ELKI-------------LHL-----NLPVSYISQNWP--VQH 457 (827)
Q Consensus 406 ~s~~~d~~~~~w~~~~~~~~~~~~~~--~d~~------~~~w-------------~~~-----~~p~~~~~~~~~--I~~ 457 (827)
++.+.|+++++|+....-.--++... ...+ .-.| ... ..-..+.+|.-+ -..
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 99999999999986543221111110 0000 0111 000 011245566543 457
Q ss_pred EEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCC---EEEEEE
Q 003356 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK---IIVVCN 513 (827)
Q Consensus 458 va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~---~li~~~ 513 (827)
+.|||||++|++|..||.+ +||..|-+ ++... +..+..|.++.|... .+++|+
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~k--l~~~l-kah~~~ci~v~wHP~e~Skvat~~ 494 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTK--LVSKL-KAHDQPCIGVDWHPVEPSKVATCG 494 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhh--hhhcc-ccCCcceEEEEecCCCcceeEecc
Confidence 8999999999999999999 99987643 22221 123446889999743 555553
No 64
>PTZ00421 coronin; Provisional
Probab=99.84 E-value=4.9e-19 Score=199.32 Aligned_cols=201 Identities=13% Similarity=0.157 Sum_probs=158.6
Q ss_pred ecCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCC------cceEEEEeecCCCCCCCCCCeEEEEECCCC-CEEE
Q 003356 253 ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFA 323 (827)
Q Consensus 253 ~~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~------~~~~~l~~~~~~~~~~h~~~V~~l~~spDg-~~La 323 (827)
+.+|.+.|. ++|+| ++++||+|+.||+|++||+.+.+ ..+..+.+ |...|.+++|+|++ .+||
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g--------H~~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG--------HTKKVGIVSFHPSAMNVLA 142 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC--------CCCcEEEEEeCcCCCCEEE
Confidence 468999887 99999 88999999999999999997622 23455666 99999999999986 6999
Q ss_pred EEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceE---E
Q 003356 324 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV---L 397 (827)
Q Consensus 324 sg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v---~ 397 (827)
+|+.|++|+|||+.++....++.+| ...|.+++|+|++ ..+++++ ++++||+.+++.+....+|.... .
T Consensus 143 Sgs~DgtVrIWDl~tg~~~~~l~~h-~~~V~sla~spdG----~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 143 SAGADMVVNVWDVERGKAVEVIKCH-SDQITSLEWNLDG----SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRC 217 (493)
T ss_pred EEeCCCEEEEEECCCCeEEEEEcCC-CCceEEEEEECCC----CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence 9999999999999999988888887 6789999999998 8888876 89999999998888777776532 2
Q ss_pred EEec-ceeeeecc----cCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceee-ccCCCcEEEEEEcCCCCEEEEEe
Q 003356 398 IFSF-GKCCLNRG----VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY-ISQNWPVQHVAASKDGMFLAVAG 471 (827)
Q Consensus 398 ~~~~-~~~~~s~~----~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~-~~~~~~I~~va~SpdG~~lavag 471 (827)
.+.. ...+++++ .|+.+++||+.+....+ ... ..+...+....|++|++++++||
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~-------------------~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY-------------------STVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce-------------------eEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 2333 34455443 47899999986544311 111 12233566778999999999998
Q ss_pred C-CceE-EEEcCCCeE
Q 003356 472 L-HGLI-LYDIRQKKW 485 (827)
Q Consensus 472 ~-dg~i-iwd~~t~~w 485 (827)
. ||.+ +||+.+++.
T Consensus 279 kgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 279 KGEGNIRCFELMNERL 294 (493)
T ss_pred eCCCeEEEEEeeCCce
Confidence 5 9999 999988764
No 65
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=6.6e-19 Score=189.83 Aligned_cols=213 Identities=18% Similarity=0.180 Sum_probs=148.6
Q ss_pred cEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC---CCCEEEEEEcCCcEEEE
Q 003356 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAFAVGWKSRGLTVW 334 (827)
Q Consensus 259 ~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp---Dg~~Lasg~~Dg~v~vW 334 (827)
.++ +++||+|+.||+|..-|+++||++.. .+....+.. |...|.|+.||. ..++||+++.|.-|.|+
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eA--------HesEilcLeyS~p~~~~kLLASasrdRlIHV~ 531 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEA--------HESEILCLEYSFPVLTNKLLASASRDRLIHVY 531 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehh-hhhhhheec--------ccceeEEEeecCchhhhHhhhhccCCceEEEE
Confidence 344 99999999999999999999999987 666666777 999999999996 35799999999999999
Q ss_pred eccCC-eeEEEeccccccceeeeeecCCCCCCccceeecc-eeEEEccC----CceEEEEec--CCcceEE--EEec-ce
Q 003356 335 SVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEY----GYRLYAIEE--GSSERVL--IFSF-GK 403 (827)
Q Consensus 335 s~~~~-~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~i~~W~~~----~~~l~~~~~--~~~~~v~--~~~~-~~ 403 (827)
|+... .++.++.+| .++|+++.|-.++. +.+.+..|. +.+.+... .+.++.... -.+..++ ++++ .+
T Consensus 532 Dv~rny~l~qtld~H-SssITsvKFa~~gl-n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k 609 (1080)
T KOG1408|consen 532 DVKRNYDLVQTLDGH-SSSITSVKFACNGL-NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK 609 (1080)
T ss_pred ecccccchhhhhccc-ccceeEEEEeecCC-ceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc
Confidence 99654 467788888 67899999876551 112222222 22222221 123322111 0123443 3444 78
Q ss_pred eeeecccCCCeeeeEEEEcCCeEEEEecCCC--Ccc---------------------e--EEEeeeceeeccCCCcEEEE
Q 003356 404 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDT--DEL---------------------K--ILHLNLPVSYISQNWPVQHV 458 (827)
Q Consensus 404 ~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~--~~~---------------------~--w~~~~~p~~~~~~~~~I~~v 458 (827)
.+++++.|..++++++..+...-.+-...+. +.. . .-...+.....+|...|+.+
T Consensus 610 ~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred eEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeee
Confidence 8888888888888887766554333322211 110 0 11234456677999999999
Q ss_pred EEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 459 AASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 459 a~SpdG~~lavag~dg~i-iwd~~t 482 (827)
.|++|-++|++++.||-| +|.+..
T Consensus 690 kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 690 KFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecccchhheeecCCceEEEEECch
Confidence 999999999999999999 998854
No 66
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.7e-18 Score=161.78 Aligned_cols=264 Identities=14% Similarity=0.215 Sum_probs=177.1
Q ss_pred eEEEEEecceEEEEEc-cCeEEEeecCC---ce--------eEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcE
Q 003356 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQ---HK--------VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLY 90 (827)
Q Consensus 23 ~vv~fspdg~lla~~~-~~~v~IW~~~~---~~--------~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~ 90 (827)
+.|+|.|.|.+.|+++ ..+.+|-.... ++ -+...++|.. -+.|.+.+.+|||+|+.||+++.|.+
T Consensus 36 rav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~k---hhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 36 RAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNK---HHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred eeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeecc---ccCccEEEEEecCccCeEEecCCCce
Confidence 4589999999999985 45677765410 10 0122234432 24599999999999999999999999
Q ss_pred EEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEee--c---CCCeEEEEecCCcEEEEecCCccCc
Q 003356 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--S---DNKHMLLGLSDGSLYSISWKGEFYG 165 (827)
Q Consensus 91 l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~--~---d~~~llv~t~dg~i~~~~w~~~~~~ 165 (827)
|++........+ ..+++ +| +.-+++.|..++ - .+..|++....|..+++--|-....
T Consensus 113 ik~l~fn~dt~~--~~g~d--------le--------~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 113 IKVLPFNADTCN--ATGHD--------LE--------FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEEEeccccccc--ccCcc--------ee--------eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 998765432211 11111 11 223344443332 1 2345666666666666544433322
Q ss_pred ceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccc
Q 003356 166 AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLA 245 (827)
Q Consensus 166 ~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~ 245 (827)
.+ .-+..+.+.|..+ .+=+|-.+++++.|.+++.|
T Consensus 175 ~~----------------------------------~a~sghtghilal-----------yswn~~m~~sgsqdktirfw 209 (350)
T KOG0641|consen 175 GF----------------------------------HALSGHTGHILAL-----------YSWNGAMFASGSQDKTIRFW 209 (350)
T ss_pred cc----------------------------------eeecCCcccEEEE-----------EEecCcEEEccCCCceEEEE
Confidence 21 0112344445433 45578889999999999999
Q ss_pred eeecccee-----c----C-CCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEE
Q 003356 246 EFIKIDKE-----L----G-SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA 314 (827)
Q Consensus 246 ~~~~~~~~-----~----~-h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~ 314 (827)
|..-..+. . | ...+|. +++.|.|++||+|-.|....+||+.. ++.++.+.. |+..|.|+.
T Consensus 210 dlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~p--------hsadir~vr 280 (350)
T KOG0641|consen 210 DLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHP--------HSADIRCVR 280 (350)
T ss_pred eeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCC--------CccceeEEE
Confidence 98755443 1 1 125676 99999999999999999999999998 899999888 999999999
Q ss_pred ECCCCCEEEEEEcCCcEEEEeccCCee----EEEeccccccceeeeeecCCC
Q 003356 315 WTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 315 ~spDg~~Lasg~~Dg~v~vWs~~~~~l----~~tl~~~~~~~v~s~~~sp~~ 362 (827)
|||...+|.+++.|..|++-|+.|... +....+| .+.+-.+.|+|.+
T Consensus 281 fsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh-kdk~i~~rwh~~d 331 (350)
T KOG0641|consen 281 FSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH-KDKAIQCRWHPQD 331 (350)
T ss_pred eCCCceEEEEecccceEEEeecccchhhcCceEEEEec-cCceEEEEecCcc
Confidence 999999999999999999999987531 2222233 3444445555544
No 67
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=8.8e-17 Score=173.95 Aligned_cols=411 Identities=15% Similarity=0.205 Sum_probs=240.0
Q ss_pred CCceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 003356 20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (827)
Q Consensus 20 ~~~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~ 98 (827)
+.-..+|||.+.+.||++ +++.|.||+.. +. -.+ .+... ..+.+.+-+++|+ +|.+|.+...+|.|.-||+..
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~-~~-w~~--~~vi~-g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLS-NN-WFL--EPVIH-GPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccC-CC-cee--eEEEe-cCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence 334457899999999988 88999999995 42 111 11111 1234666789999 556677777899999999986
Q ss_pred cCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcc
Q 003356 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (827)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~ 178 (827)
....... +..+..+|++ |+.+.++.+++|+.||.+..++-..+...-.
T Consensus 100 lk~~~~~---d~~gg~IWsi------------------ai~p~~~~l~IgcddGvl~~~s~~p~~I~~~----------- 147 (691)
T KOG2048|consen 100 LKQKYNI---DSNGGAIWSI------------------AINPENTILAIGCDDGVLYDFSIGPDKITYK----------- 147 (691)
T ss_pred CceeEEe---cCCCcceeEE------------------EeCCccceEEeecCCceEEEEecCCceEEEE-----------
Confidence 5532211 1122334433 4455567899999999555443332221111
Q ss_pred cceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee-----
Q 003356 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----- 253 (827)
Q Consensus 179 i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~----- 253 (827)
..+...++.+.++. +.++|..++.|+.|+-+++||...+...
T Consensus 148 -----------------------r~l~rq~sRvLsls----------w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~ 194 (691)
T KOG2048|consen 148 -----------------------RSLMRQKSRVLSLS----------WNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM 194 (691)
T ss_pred -----------------------eecccccceEEEEE----------ecCCccEEEecccCceEEEEEcCCCceEEEeee
Confidence 11233467788877 4556666666666666777776654432
Q ss_pred ----cCC--CCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 003356 254 ----LGS--GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (827)
Q Consensus 254 ----~~h--~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~ 326 (827)
... .-.++ +.|= .-..||+|...|+|.+||... +.+++..+. |.+-|.|++-++++.++++++
T Consensus 195 ~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~-gTLiqS~~~--------h~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIF-GTLIQSHSC--------HDADVLALAVADNEDRVFSAG 264 (691)
T ss_pred cccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccC-cchhhhhhh--------hhcceeEEEEcCCCCeEEEcc
Confidence 111 12233 4433 556899999999999999988 888888777 999999999999999999999
Q ss_pred cCCcEEEEeccCCee---EEEeccccccceeeeeecCCC----------------CCCc-----------cceeecc---
Q 003356 327 KSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQ----------------DCKY-----------EPLMSGT--- 373 (827)
Q Consensus 327 ~Dg~v~vWs~~~~~l---~~tl~~~~~~~v~s~~~sp~~----------------~~~~-----------~~l~sg~--- 373 (827)
.|+.+.-+...++.- ...-+.++...|.+++..++. ..+. ...+++.
T Consensus 265 vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~ 344 (691)
T KOG2048|consen 265 VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPEN 344 (691)
T ss_pred CCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccc
Confidence 999999998877643 222233334455555543321 0000 0011111
Q ss_pred -eeEEEccCCceEEEEecC----Ccce--EEEEec-ce---eeeecccCCC---------eeeeEEEEc-----------
Q 003356 374 -SMMQWDEYGYRLYAIEEG----SSER--VLIFSF-GK---CCLNRGVSGM---------TYARQVIYG----------- 422 (827)
Q Consensus 374 -~i~~W~~~~~~l~~~~~~----~~~~--v~~~~~-~~---~~~s~~~d~~---------~~~w~~~~~----------- 422 (827)
..+.|...+..+|..... +.+. +..+.. .+ +.++.|+||. .+++.+...
T Consensus 345 ~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~ 424 (691)
T KOG2048|consen 345 RLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDV 424 (691)
T ss_pred eEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccc
Confidence 445676666666654322 1111 111111 11 1122233332 222222110
Q ss_pred ---------------CCeEEEEecCCCCcceEEEeee--ce-------eeccCCCcEEEEEEcCCCCEEEEEeCCceE-E
Q 003356 423 ---------------EDRLLVVQSEDTDELKILHLNL--PV-------SYISQNWPVQHVAASKDGMFLAVAGLHGLI-L 477 (827)
Q Consensus 423 ---------------~~~~~~~~~~d~~~~~w~~~~~--p~-------~~~~~~~~I~~va~SpdG~~lavag~dg~i-i 477 (827)
.+.+++.. .....|+.++. |. .-.+-..+|..++.||||+|+|+++.+|.| +
T Consensus 425 ~~~~~~a~~i~ftid~~k~~~~s---~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v 501 (691)
T KOG2048|consen 425 PLALLDASAISFTIDKNKLFLVS---KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFV 501 (691)
T ss_pred hhhhccceeeEEEecCceEEEEe---cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEE
Confidence 11111111 11122322221 11 001345579999999999999999999999 9
Q ss_pred EEcCCCeEEeeCCccceEEEEEEEEE-EeCCEEEEEEEe
Q 003356 478 YDIRQKKWRVFGDITQEQKIQSKGLL-WLGKIIVVCNYI 515 (827)
Q Consensus 478 wd~~t~~w~~f~~~~~e~~~~v~gl~-W~~~~li~~~~~ 515 (827)
||+++++-+.+...-. ..++.-++. |..+.++++..+
T Consensus 502 ~nl~~~~~~~l~~rln-~~vTa~~~~~~~~~~lvvats~ 539 (691)
T KOG2048|consen 502 YNLETLESHLLKVRLN-IDVTAAAFSPFVRNRLVVATSN 539 (691)
T ss_pred EEcccceeecchhccC-cceeeeeccccccCcEEEEecC
Confidence 9999999887753322 333333433 777777777443
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.83 E-value=4.4e-19 Score=199.81 Aligned_cols=269 Identities=16% Similarity=0.212 Sum_probs=218.1
Q ss_pred ccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCccc
Q 003356 131 KGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSA 210 (827)
Q Consensus 131 ~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (827)
++..+.+.....+.+..++.++.++. |+....... ...+.++.+.
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~--~~~~~~~~i---------------------------------~~~l~GH~g~ 251 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHL--WDLNNGYLI---------------------------------LTRLVGHFGG 251 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEE--eecccceEE---------------------------------EeeccCCCCC
Confidence 34456666777788889999999865 654432221 1223456666
Q ss_pred EEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcC
Q 003356 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLA 286 (827)
Q Consensus 211 i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~ 286 (827)
+..++ +..-+..+++++.|.++++||..++++. .+|...++ +.. ....+++|+.|.+|++|++.
T Consensus 252 V~~l~----------~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 252 VWGLA----------FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred ceeEE----------EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEecc
Confidence 76655 4445778888999999999998888775 78888886 543 56678889999999999999
Q ss_pred CCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCc
Q 003356 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKY 366 (827)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~ 366 (827)
+ +..++++.+ |+++|+++... +.++++|+.|++|+||++..++++.++.+| ...|.++.+.+.
T Consensus 320 n-~~~l~l~~~--------h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~~----- 382 (537)
T KOG0274|consen 320 N-GACLNLLRG--------HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDSE----- 382 (537)
T ss_pred C-cceEEEecc--------ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC-cceEEEEEecCc-----
Confidence 8 889999988 99999999998 889999999999999999999999999998 789999987653
Q ss_pred cceeecc---eeEEEccCCc-eEEEEecCCcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEE
Q 003356 367 EPLMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (827)
Q Consensus 367 ~~l~sg~---~i~~W~~~~~-~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~ 441 (827)
..+.+|+ ++++||..+. +++.++.+|..-+..+.+ .+.+++++.|+++++||...++.
T Consensus 383 ~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~----------------- 445 (537)
T KOG0274|consen 383 NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC----------------- 445 (537)
T ss_pred ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCce-----------------
Confidence 4566776 7999999999 999999999888877777 89999999999999999877766
Q ss_pred eeeceeecc-CCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeE
Q 003356 442 LNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (827)
Q Consensus 442 ~~~p~~~~~-~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w 485 (827)
..++.+ |...|..+++. ...+++++.||.+ +||+.++.-
T Consensus 446 ---~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 446 ---LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred ---eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 344555 56778888887 5678899999999 999998863
No 69
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.5e-18 Score=171.59 Aligned_cols=303 Identities=14% Similarity=0.117 Sum_probs=181.3
Q ss_pred hhhc-CcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCC
Q 003356 64 VQRE-GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN 142 (827)
Q Consensus 64 ~~~~-G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~ 142 (827)
+..| +.+++++||.||+.||+++.|+.|++|++.-= ....|. .++ ..+..+......|++|-
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF----~~~eHr-----------~~R--~nve~dhpT~V~FapDc 144 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDF----ENKEHR-----------CIR--QNVEYDHPTRVVFAPDC 144 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchh----hhhhhh-----------Hhh--ccccCCCceEEEECCCc
Confidence 4444 67789999999999999999999999998621 111111 011 11222233445788888
Q ss_pred CeEEEEecCC-cEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceecccc-CCCcccEEEEEEcCCc
Q 003356 143 KHMLLGLSDG-SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK-FPISSAIIWLELCLPM 220 (827)
Q Consensus 143 ~~llv~t~dg-~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~ 220 (827)
..+++....| .+.+|..+..+.+...+ +..++. + ..+ ..++..+.++.
T Consensus 145 ~s~vv~~~~g~~l~vyk~~K~~dG~~~~-----~~v~~D-------~-------------~~f~~kh~v~~i~iG----- 194 (420)
T KOG2096|consen 145 KSVVVSVKRGNKLCVYKLVKKTDGSGSH-----HFVHID-------N-------------LEFERKHQVDIINIG----- 194 (420)
T ss_pred ceEEEEEccCCEEEEEEeeecccCCCCc-----cccccc-------c-------------cccchhcccceEEEe-----
Confidence 8888888766 56666555444433211 100000 0 001 12233444433
Q ss_pred ceEEEEEeCCcEEEEeeccCccccceeeccceec----CCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCC--CC---cc
Q 003356 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL----GSGDAVCASIAPEQQILAVGTRRGVVELYDLAE--SA---SL 291 (827)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~--~~---~~ 291 (827)
+..+++++++++.|.++-+|++. ++.+. ....-..+++||+|++||+++.--.|+||.+-- .+ +.
T Consensus 195 -----iA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev 268 (420)
T KOG2096|consen 195 -----IAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEV 268 (420)
T ss_pred -----ecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhh
Confidence 45667788888888888899987 44331 111222389999999999999988999999732 12 12
Q ss_pred --eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce
Q 003356 292 --IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (827)
Q Consensus 292 --~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l 369 (827)
...+++ |..+|...+|||+.+.+++.+.||+|++||+.-.-.. .+ |. ..+
T Consensus 269 ~rvf~LkG--------H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~---~q-------------Dp----k~L 320 (420)
T KOG2096|consen 269 KRVFSLKG--------HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA---GQ-------------DP----KIL 320 (420)
T ss_pred hhhheecc--------chhheeeeeeCCCcceeEEEecCCcEEEeeccceEec---CC-------------Cc----hHh
Confidence 234555 9999999999999999999999999999998532100 00 00 111
Q ss_pred eecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeec
Q 003356 370 MSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (827)
Q Consensus 370 ~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~ 449 (827)
..|+ .-.-+. +++.+...-...+.++++++ ..+++++....+++ .|.--.
T Consensus 321 k~g~-~pl~aa-g~~p~RL~lsP~g~~lA~s~---------gs~l~~~~se~g~~-------------------~~~~e~ 370 (420)
T KOG2096|consen 321 KEGS-APLHAA-GSEPVRLELSPSGDSLAVSF---------GSDLKVFASEDGKD-------------------YPELED 370 (420)
T ss_pred hcCC-cchhhc-CCCceEEEeCCCCcEEEeec---------CCceEEEEcccCcc-------------------chhHHH
Confidence 1111 000011 11111111111223333333 22344433333333 244445
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCceEE
Q 003356 450 SQNWPVQHVAASKDGMFLAVAGLHGLIL 477 (827)
Q Consensus 450 ~~~~~I~~va~SpdG~~lavag~dg~ii 477 (827)
.|...|.+++|++||+++|+.|++-..+
T Consensus 371 ~h~~~Is~is~~~~g~~~atcGdr~vrv 398 (420)
T KOG2096|consen 371 IHSTTISSISYSSDGKYIATCGDRYVRV 398 (420)
T ss_pred hhcCceeeEEecCCCcEEeeecceeeee
Confidence 7889999999999999999999876553
No 70
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=5e-19 Score=196.57 Aligned_cols=202 Identities=13% Similarity=0.156 Sum_probs=141.1
Q ss_pred cCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee--cCCCCcEE-EEEcC-CCCEEEEEecCCe
Q 003356 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAP-EQQILAVGTRRGV 279 (827)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~-va~sp-~~~lla~g~~dg~ 279 (827)
+.+|...|.++.|+. ..++++++-|.|+++|+....+++ -.|.+.|+ ++|+| |.+++++|+-||.
T Consensus 365 f~GHt~DILDlSWSK-----------n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 365 FKGHTADILDLSWSK-----------NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGK 433 (712)
T ss_pred hhccchhheeccccc-----------CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccc
Confidence 466777888887654 456777888999999999877766 56888776 99999 7899999999999
Q ss_pred EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeec
Q 003356 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (827)
Q Consensus 280 v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~s 359 (827)
||||++.+ .+...-.. -..-|++++|+|||+..++|.-+|.+++|++.+.++.....-+ ..
T Consensus 434 vRiWsI~d-~~Vv~W~D---------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~---------~~ 494 (712)
T KOG0283|consen 434 VRLWSISD-KKVVDWND---------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR---------LH 494 (712)
T ss_pred eEEeecCc-CeeEeehh---------hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe---------ec
Confidence 99999987 44333222 2467999999999999999999999999999998876543211 00
Q ss_pred CCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEec--ce--eeeecccCCCeeeeEEEEcCCeEEEEecCCCC
Q 003356 360 PNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF--GK--CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (827)
Q Consensus 360 p~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~--~~--~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~ 435 (827)
+. + . ..+. +|..|.| +. .++..+.|..|++++..+.+-
T Consensus 495 ~~-----K--------------------k-~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l----------- 536 (712)
T KOG0283|consen 495 NK-----K--------------------K-KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL----------- 536 (712)
T ss_pred cC-----c--------------------c-ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh-----------
Confidence 00 0 0 0111 4433333 22 234345566666665432222
Q ss_pred cceEEEeeeceeeccCC--CcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 436 ELKILHLNLPVSYISQN--WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 436 ~~~w~~~~~p~~~~~~~--~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
..+|.+.. ..-..++|+.||++|++|++|..+ +|+...
T Consensus 537 ---------v~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 537 ---------VHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ---------hhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 34444321 123568999999999999999999 999743
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.83 E-value=1.7e-18 Score=167.66 Aligned_cols=254 Identities=15% Similarity=0.160 Sum_probs=194.7
Q ss_pred cCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCe
Q 003356 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGV 279 (827)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~ 279 (827)
+.++..+++.+. ..-+|.++++++.|.++.+|-..+++++ .||.++|+ +.++-+.+.+.+|+.|.+
T Consensus 6 l~GHERplTqiK----------yN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t 75 (327)
T KOG0643|consen 6 LQGHERPLTQIK----------YNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQT 75 (327)
T ss_pred cccCccccceEE----------ecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccce
Confidence 445666788877 4568889999999999999988777776 89999998 999999999999999999
Q ss_pred EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC-----CcEEEEecc-------CCeeEEEecc
Q 003356 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-----RGLTVWSVS-------GCRLMSTIRQ 347 (827)
Q Consensus 280 v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D-----g~v~vWs~~-------~~~l~~tl~~ 347 (827)
+++||+.+ ++.+.+++. ..+|+.+.|+++|++++...++ +.|.++++. +..+...+..
T Consensus 76 ~kLWDv~t-Gk~la~~k~---------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 76 AKLWDVET-GKQLATWKT---------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred eEEEEcCC-CcEEEEeec---------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 99999999 888888775 6789999999999988776543 578999886 3444555555
Q ss_pred ccccceeeeeecCCCCCCccceeecc---eeEEEccCCc-eEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEE
Q 003356 348 ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVI 420 (827)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~-~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~ 420 (827)
+ .+.+++..|+|-+ +.+++|- .+..|+..++ +++...+.|...|..+.+ ...++++|.|.+-++||+.
T Consensus 146 ~-~skit~a~Wg~l~----~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 146 P-DSKITSALWGPLG----ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred C-ccceeeeeecccC----CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence 4 4678888999988 8888875 8999999986 555566778888855555 6789999999999999975
Q ss_pred EcC--------------------CeEEEEecCCCCcc--------eE-----EEe--eeceeeccCCCcEEEEEEcCCCC
Q 003356 421 YGE--------------------DRLLVVQSEDTDEL--------KI-----LHL--NLPVSYISQNWPVQHVAASKDGM 465 (827)
Q Consensus 421 ~~~--------------------~~~~~~~~~d~~~~--------~w-----~~~--~~p~~~~~~~~~I~~va~SpdG~ 465 (827)
.-+ +.+.+-.|.++.+. +. +.+ .-...+.+|-+||.++||+|||+
T Consensus 221 tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk 300 (327)
T KOG0643|consen 221 TLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK 300 (327)
T ss_pred ceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc
Confidence 421 12222223222211 00 111 01235779999999999999999
Q ss_pred EEEEEeCCceE-EEEcCC
Q 003356 466 FLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 466 ~lavag~dg~i-iwd~~t 482 (827)
..++||.||.+ +.-...
T Consensus 301 sYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 301 SYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccccCCCCceEEEEEecc
Confidence 99999999999 765443
No 72
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.82 E-value=1.5e-16 Score=175.44 Aligned_cols=449 Identities=15% Similarity=0.149 Sum_probs=286.0
Q ss_pred EEEecce-EEE-EEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCcee
Q 003356 26 YFKVNNG-LLL-IASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (827)
Q Consensus 26 ~fspdg~-lla-~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~ 103 (827)
.+..-|+ +++ ++.+.+..+||++ ...++..-+. ....+.++ +.++.+.+++... .|..|.- ++.
T Consensus 40 ~~~~~~~~~~vtt~vgksfqvYd~~-kl~ll~vs~~------lp~~I~al--as~~~~vy~A~g~-~i~~~~r--gk~-- 105 (910)
T KOG1539|consen 40 RVVALGSTFYVTTCVGKSFQVYDVN-KLNLLFVSKP------LPDKITAL--ASDKDYVYVASGN-KIYAYAR--GKH-- 105 (910)
T ss_pred eeeecCceEEEEEecCceEEEEecc-ceEEEEecCC------CCCceEEE--EecCceEEEecCc-EEEEEEc--cce--
Confidence 3444444 333 4468899999996 4433333211 12334444 4556666666544 3545442 211
Q ss_pred ecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceec
Q 003356 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSH 183 (827)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~ 183 (827)
++.. ...+...|.-+.+-|++++.+..++.+.+|.-........ +. +
T Consensus 106 -----------i~~~---------~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~-----------l~-~- 152 (910)
T KOG1539|consen 106 -----------IRHT---------TLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELY-----------LQ-S- 152 (910)
T ss_pred -----------EEEE---------eccccceEEEEeeecceEEEEEccCcEEEEEecccccccc-----------cc-c-
Confidence 0100 1222245555667789999999999998865433111101 00 0
Q ss_pred ccCCCCccccccCCceeccccCCCcccEEEEEEcCCc-ceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCc
Q 003356 184 HFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA 259 (827)
Q Consensus 184 ~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~ 259 (827)
.........|+++.|.+++ |.++..+.+|++.+ |+..+.+.. .++.+.
T Consensus 153 ------------------~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql----------~Nvrt~K~v~~f~~~~s~ 204 (910)
T KOG1539|consen 153 ------------------TFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQL----------WNVRTGKVVYTFQEFFSR 204 (910)
T ss_pred ------------------eeeeccCCceeeEecchhheeeEEEeecCCcEEE----------EEeccCcEEEEecccccc
Confidence 0111222238888777766 56555566666554 666655443 455566
Q ss_pred EE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCC-EEEEEEcCCcEEEEecc
Q 003356 260 VC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 260 v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~-~Lasg~~Dg~v~vWs~~ 337 (827)
++ +.-+|-=..+|+|..||+|.++++.. ++.+.+++. ..|+|++++|..||. .||+|...|.+.+||+.
T Consensus 205 IT~ieqsPaLDVVaiG~~~G~ViifNlK~-dkil~sFk~--------d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe 275 (910)
T KOG1539|consen 205 ITAIEQSPALDVVAIGLENGTVIIFNLKF-DKILMSFKQ--------DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLE 275 (910)
T ss_pred eeEeccCCcceEEEEeccCceEEEEEccc-CcEEEEEEc--------cccceeEEEeccCCCeeEEeccCCceEEEEEcC
Confidence 65 88889899999999999999999998 888888875 359999999999998 66777777899999999
Q ss_pred CCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccC--C--ceEEEEecCCcceEEEEec----ceeee
Q 003356 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY--G--YRLYAIEEGSSERVLIFSF----GKCCL 406 (827)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~--~--~~l~~~~~~~~~~v~~~~~----~~~~~ 406 (827)
..++...++..+..++....|-|.. ..+++.. ..+.|-.+ . .+++..-.||..+..++.| +..+.
T Consensus 276 ~kkl~~v~~nah~~sv~~~~fl~~e----pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~il 351 (910)
T KOG1539|consen 276 KKKLINVTRNAHYGSVTGATFLPGE----PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFIL 351 (910)
T ss_pred CCeeeeeeeccccCCcccceecCCC----ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEE
Confidence 9999988886446677777777765 4455444 45555333 2 3667777888887766666 77889
Q ss_pred ecccCCCeeeeEEEEcCCe---------------------------EEEEecCCC----------------CcceEE---
Q 003356 407 NRGVSGMTYARQVIYGEDR---------------------------LLVVQSEDT----------------DELKIL--- 440 (827)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~---------------------------~~~~~~~d~----------------~~~~w~--- 440 (827)
+.+.|++.+.+.+.+...+ +..+....+ ....|+
T Consensus 352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence 9999998776655322110 000000000 112341
Q ss_pred -----EeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEE-eeCCccceEEEEEEEEEEe--CCEEEE
Q 003356 441 -----HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWL--GKIIVV 511 (827)
Q Consensus 441 -----~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~-~f~~~~~e~~~~v~gl~W~--~~~li~ 511 (827)
+.--|..+..-...++++++|++|++.++|...|.| +||+++|.-+ .|+ ..+.++..|+|++-. +..+++
T Consensus 432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~-~~~ah~~~V~gla~D~~n~~~vs 510 (910)
T KOG1539|consen 432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG-DSPAHKGEVTGLAVDGTNRLLVS 510 (910)
T ss_pred cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc-cCccccCceeEEEecCCCceEEE
Confidence 222233333344678999999999999999999999 9999999765 354 223455568887765 445777
Q ss_pred EEEeeCCCcEEEEEeeCCCCCccceEEEEecCCccEEEEccC--CEEEEEEcCceEEEEEEE
Q 003356 512 CNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYE--DYILVTYRPFDVHIFHVK 571 (827)
Q Consensus 512 ~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~~~~~~l~~~~--~~llV~~~~~~i~l~~~~ 571 (827)
|++. .-+.+|++. +..++...++...+..+...+ +.+.+.++|+.|++|++.
T Consensus 511 a~~~-----Gilkfw~f~---~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 511 AGAD-----GILKFWDFK---KKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred ccCc-----ceEEEEecC---CcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence 7443 568899885 222455555666555555543 445557889999999986
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.82 E-value=8.1e-19 Score=177.53 Aligned_cols=261 Identities=12% Similarity=0.132 Sum_probs=199.5
Q ss_pred CcEEEEeeccCccccceeeccce--ecCCCCcEE-EEEc-C--CCCEEEEEecCCeEEEEEcCCCCcc----eEEEEeec
Q 003356 230 GQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAVC-ASIA-P--EQQILAVGTRRGVVELYDLAESASL----IRTVSLYD 299 (827)
Q Consensus 230 G~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~-va~s-p--~~~lla~g~~dg~v~vw~~~~~~~~----~~~l~~~~ 299 (827)
++.+++++.|++.++|+...... ..||.+++. +++- + ...++++++.|.++++|.++. ++. ++.-++
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~-~~~~~~~~~~~~G-- 191 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV-GENKVKALKVCRG-- 191 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC-chhhhhHHhHhcc--
Confidence 78899999999999999764433 378999887 5543 3 344799999999999999987 432 222234
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc-------------------------CCeeEEEecccccccee
Q 003356 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-------------------------GCRLMSTIRQISLSSIS 354 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~-------------------------~~~l~~tl~~~~~~~v~ 354 (827)
|.++|-+++..+||..+++|+.|.++++|+.. .+..+.++.+| ...|.
T Consensus 192 ------Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH-t~~Vs 264 (423)
T KOG0313|consen 192 ------HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH-TEPVS 264 (423)
T ss_pred ------cccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc-cccee
Confidence 99999999999999999999999999999931 12345677787 78999
Q ss_pred eeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEE
Q 003356 355 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLV 428 (827)
Q Consensus 355 s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~ 428 (827)
++.|++. ..+.+++ +++.||..++++.....+.. .+.+++. .+.+++||.|..+++||-..++..+
T Consensus 265 ~V~w~d~-----~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~-- 336 (423)
T KOG0313|consen 265 SVVWSDA-----TVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV-- 336 (423)
T ss_pred eEEEcCC-----CceEeecccceEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCCCceeecCCCCCCCce--
Confidence 9999885 4555665 99999999998877765533 4444444 7789999999999999988887754
Q ss_pred EecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCC-EEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeC
Q 003356 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG 506 (827)
Q Consensus 429 ~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~-~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~ 506 (827)
+.++|.+|+..|.++.|+|... .+++|+.|+++ +||+++-+=.+|.-..++ -.|....|..
T Consensus 337 ---------------v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~--DKvl~vdW~~ 399 (423)
T KOG0313|consen 337 ---------------VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN--DKVLSVDWNE 399 (423)
T ss_pred ---------------eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCC--ceEEEEeccC
Confidence 3467999999999999999754 67789999999 999998764555443332 2577889998
Q ss_pred CEEEEEEEeeCCCcEEEEEeeCC
Q 003356 507 KIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 507 ~~li~~~~~~~~~~~~lrly~~~ 529 (827)
..+|+.+ ..+..||+|.-.
T Consensus 400 ~~~IvSG----GaD~~l~i~~~~ 418 (423)
T KOG0313|consen 400 GGLIVSG----GADNKLRIFKGS 418 (423)
T ss_pred CceEEec----cCcceEEEeccc
Confidence 8555542 223578887653
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.82 E-value=6.1e-19 Score=184.32 Aligned_cols=286 Identities=9% Similarity=0.090 Sum_probs=190.1
Q ss_pred ccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEe
Q 003356 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL 149 (827)
Q Consensus 70 ~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t 149 (827)
+.++++-|.|.++++|+-|.+|++||.+.=..... .++.-.+.+.+.......++.++.|++.+
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~----------------~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR----------------SFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccch----------------hhhccCcccccccceeeecCCCCeEEEEe
Confidence 46788999999999999999999999863221100 01111122333344445667789999999
Q ss_pred cCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceec--cccCCCcccEEEEEEcCCcceEEEEE
Q 003356 150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVS--DHKFPISSAIIWLELCLPMRLLFVLY 227 (827)
Q Consensus 150 ~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~~~~~s 227 (827)
.....++++-+|....++ ..+.| +++ ...+++...+++.+|+|..
T Consensus 234 g~aqakl~DRdG~~~~e~-----------------~KGDQ---------YI~Dm~nTKGHia~lt~g~whP~~------- 280 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEF-----------------SKGDQ---------YIRDMYNTKGHIAELTCGCWHPDN------- 280 (641)
T ss_pred cCcceeEEccCCceeeee-----------------eccch---------hhhhhhccCCceeeeeccccccCc-------
Confidence 999999988777654332 11111 111 1113344455555655543
Q ss_pred eCCcEEEEeeccCccccceeecccee---------cCCC-CcEEEEEcCCCCEEEEEecCCeEEEEEcCCCC-cceEEEE
Q 003356 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---------LGSG-DAVCASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVS 296 (827)
Q Consensus 228 ~dG~~~~~~~~~~~~~~~~~~~~~~~---------~~h~-~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~-~~~~~l~ 296 (827)
...+++++.|+++++|+....+.. .+.. .++.++|||||.+||.|+.||.|.+|+..... .....++
T Consensus 281 --k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk 358 (641)
T KOG0772|consen 281 --KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK 358 (641)
T ss_pred --ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEee
Confidence 235667778888899988765432 1112 23349999999999999999999999975411 1122222
Q ss_pred eecCCCCCCCCC--CeEEEEECCCCCEEEEEEcCCcEEEEeccC-CeeEEEeccc-cccceeeeeecCCCCCCccceeec
Q 003356 297 LYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSG 372 (827)
Q Consensus 297 ~~~~~~~~~h~~--~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~-~~l~~tl~~~-~~~~v~s~~~sp~~~~~~~~l~sg 372 (827)
. +|.+ .|+||+||+||++|++-+.|+++++||+.. ++++.+..+. ..-.-+.++|||+. +.+++|
T Consensus 359 ~-------AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~----kli~TG 427 (641)
T KOG0772|consen 359 D-------AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD----KLILTG 427 (641)
T ss_pred e-------ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc----eEEEec
Confidence 1 3777 899999999999999999999999999954 3334333331 11245678999998 888888
Q ss_pred c---------eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeee
Q 003356 373 T---------SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYAR 417 (827)
Q Consensus 373 ~---------~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w 417 (827)
. +..+++..+++....+.-....|....+ -..+..++.||+++++
T Consensus 428 tS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 428 TSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 5 5678888888887776555566655555 4556677778877653
No 75
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.4e-18 Score=191.62 Aligned_cols=209 Identities=20% Similarity=0.281 Sum_probs=157.0
Q ss_pred hhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCe
Q 003356 65 QREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (827)
Q Consensus 65 ~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~ 144 (827)
.+.++.+.++|.|||..|+++++||.+++|+.....+ .++ .++.....|.++++...+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-------~P~---------------ti~~~g~~v~~ia~~s~~ 68 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-------EPE---------------TIDISGELVSSIACYSNH 68 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-------CCc---------------hhhccCceeEEEeecccc
Confidence 4567789999999999999999999999999753310 010 011134578899999999
Q ss_pred EEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEE
Q 003356 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (827)
Q Consensus 145 llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (827)
+++|+.++++.++..+....... +..-..++.. +
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~i------------------------------------L~Rftlp~r~----------~ 102 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTI------------------------------------LARFTLPIRD----------L 102 (933)
T ss_pred eEEeeccceEEEeeCCCCCccce------------------------------------eeeeeccceE----------E
Confidence 99999999999987764332211 0011122433 4
Q ss_pred EEEeCCcEEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecC
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~ 300 (827)
+++-+|+.++.+++|..+++.+..+... +.+|...|. +.++|++.+||+.+-||+|++|++++ +.+..++.+...
T Consensus 103 ~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k 181 (933)
T KOG1274|consen 103 AVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVDK 181 (933)
T ss_pred EEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCCc
Confidence 4788899999999999888877765432 378999887 99999999999999999999999998 777777666443
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeE
Q 003356 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM 342 (827)
Q Consensus 301 ~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~ 342 (827)
.....-...+..++|+|+|..||+-..|+.|++++..+....
T Consensus 182 ~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 182 DNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred cccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 333333566788999999888888888899999998876533
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.6e-18 Score=179.38 Aligned_cols=278 Identities=15% Similarity=0.211 Sum_probs=188.4
Q ss_pred hhhcCcccEEEEcCCccE-EEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCC
Q 003356 64 VQREGENLQAVWSPDTKL-IAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN 142 (827)
Q Consensus 64 ~~~~G~~~~v~wSPDg~~-lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~ 142 (827)
.+++..+.+++|||...+ +||++ .-.+.||+..+-.... ....|+. ...-.+|..||
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k--------------------~~srFk~-~v~s~~fR~DG 80 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK--------------------TFSRFKD-VVYSVDFRSDG 80 (487)
T ss_pred ccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh--------------------hHHhhcc-ceeEEEeecCC
Confidence 356788899999997665 45544 4469999875432111 0111222 12333677889
Q ss_pred CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcce
Q 003356 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (827)
Q Consensus 143 ~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (827)
+.+++|...|.+++++... .... -.+..+..++..+.|++.
T Consensus 81 ~LlaaGD~sG~V~vfD~k~--r~iL----------------------------------R~~~ah~apv~~~~f~~~--- 121 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKS--RVIL----------------------------------RQLYAHQAPVHVTKFSPQ--- 121 (487)
T ss_pred eEEEccCCcCcEEEecccc--HHHH----------------------------------HHHhhccCceeEEEeccc---
Confidence 9999999999999986321 1000 112445556666554442
Q ss_pred EEEEEeCCcEEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEcCCCCcceEEEEe
Q 003356 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~-~~lla~g~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
|+..++++++|..++.|+..+... +.+|++.|+ .+++|. ..++++|+.||+||+||+...+..+..+.
T Consensus 122 ------d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln- 194 (487)
T KOG0310|consen 122 ------DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN- 194 (487)
T ss_pred ------CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-
Confidence 344555556666677888776542 378999998 999986 45899999999999999987334444433
Q ss_pred ecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc-CCeeEEEeccccccceeeeeecCCCCCCccceeecceeE
Q 003356 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMM 376 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~-~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~ 376 (827)
|..+|.++.+-|.|..+|+++. +.|+|||+. |+++++....| ...|+|+++..++ .
T Consensus 195 --------hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H-~KtVTcL~l~s~~----~--------- 251 (487)
T KOG0310|consen 195 --------HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNH-NKTVTCLRLASDS----T--------- 251 (487)
T ss_pred --------CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcc-cceEEEEEeecCC----c---------
Confidence 8999999999999999999998 799999998 66666666656 5678887775543 2
Q ss_pred EEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEE
Q 003356 377 QWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (827)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~ 456 (827)
.++|++.|+.+++++.. +-++ ... ..-.+||.
T Consensus 252 ---------------------------rLlS~sLD~~VKVfd~t--~~Kv------------------v~s-~~~~~pvL 283 (487)
T KOG0310|consen 252 ---------------------------RLLSGSLDRHVKVFDTT--NYKV------------------VHS-WKYPGPVL 283 (487)
T ss_pred ---------------------------eEeecccccceEEEEcc--ceEE------------------EEe-eeccccee
Confidence 34556666666666521 1110 111 11235899
Q ss_pred EEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 457 HVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 457 ~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
++++|||++.+++|..||++ +=..
T Consensus 284 siavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 284 SIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred eEEecCCCceEEEecccceeeeehh
Confidence 99999999999999999999 4433
No 77
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.81 E-value=8.8e-19 Score=172.42 Aligned_cols=198 Identities=15% Similarity=0.277 Sum_probs=160.7
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCC-----------C------cceEEEEeecCCCCCCCCCCeEEEEE
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-----------A------SLIRTVSLYDWGYSMDDTGPVSCIAW 315 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~-----------~------~~~~~l~~~~~~~~~~h~~~V~~l~~ 315 (827)
..|..+++ .+|||||.++|+|+.|..|++.|+... + ..++++-. |..+|+++.|
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD--------H~devn~l~F 180 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD--------HVDEVNDLDF 180 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh--------ccCcccceee
Confidence 45777777 899999999999999999999998720 0 12444444 9999999999
Q ss_pred CCCCCEEEEEEcCCcEEEEeccCC---eeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEe
Q 003356 316 TPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 389 (827)
Q Consensus 316 spDg~~Lasg~~Dg~v~vWs~~~~---~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~ 389 (827)
.|-...|++|+.|++|+++|.... +.+..+.+ ...|.++.|+|.| +.++.|. +.++++..++|++...
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd--~~~vrsiSfHPsG----efllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD--TEPVRSISFHPSG----EFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhc--cceeeeEeecCCC----ceEEEecCCCceeEEeccceeEeeec
Confidence 999999999999999999998543 23334443 3579999999999 8888776 8899999999999876
Q ss_pred c---CCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeec-cCCC-cEEEEEEc
Q 003356 390 E---GSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNW-PVQHVAAS 461 (827)
Q Consensus 390 ~---~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~-~~~~-~I~~va~S 461 (827)
. +|.+.|.++.+ ++..++++.||.+++||-..+.. ..++. +|.+ .|.++.|+
T Consensus 255 nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--------------------v~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC--------------------VRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH--------------------HHHHHhhcCCceeeeEEEc
Confidence 4 46677866655 88999999999999999554433 33333 4543 58999999
Q ss_pred CCCCEEEEEeCCceE-EEEcCCCeE
Q 003356 462 KDGMFLAVAGLHGLI-LYDIRQKKW 485 (827)
Q Consensus 462 pdG~~lavag~dg~i-iwd~~t~~w 485 (827)
.+|+|+.+.|.|.++ +|.+.|||-
T Consensus 315 kn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 315 KNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred cCCeEEeecCCcceeeeeeecCCce
Confidence 999999999999999 999999974
No 78
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=8.5e-17 Score=168.05 Aligned_cols=415 Identities=15% Similarity=0.133 Sum_probs=247.5
Q ss_pred CcccccCceeecCCCCCCC-CCceEEEEEecc-eEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCC
Q 003356 1 MYMAYGWPQVIPLEQGLCP-SSQQIIYFKVNN-GLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD 78 (827)
Q Consensus 1 my~~~gwp~~~~~~~~~~~-~~~~vv~fspdg-~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPD 78 (827)
|.-.+-|||--.+++-.|. +......|.|-+ +++++.+.+.+..|+.+ .+.+.-.. ..-+. .+.-.+.+++|.++
T Consensus 181 ~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~-~~~l~k~~-~~fek-~ekk~Vl~v~F~en 257 (626)
T KOG2106|consen 181 MLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR-GGSLVKRQ-GIFEK-REKKFVLCVTFLEN 257 (626)
T ss_pred ccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEcc-CCceEEEe-ecccc-ccceEEEEEEEcCC
Confidence 3345678886655544221 122346799976 57888899999999885 33322111 11011 12256789999999
Q ss_pred ccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCC-CeEEEEecCCcEEEE
Q 003356 79 TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSI 157 (827)
Q Consensus 79 g~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~-~~llv~t~dg~i~~~ 157 (827)
|. ++++.++|++.||+...... ... ...+++.|.++..-+ ..|+.|.+|..|..
T Consensus 258 gd-viTgDS~G~i~Iw~~~~~~~---------------------~k~--~~aH~ggv~~L~~lr~GtllSGgKDRki~~- 312 (626)
T KOG2106|consen 258 GD-VITGDSGGNILIWSKGTNRI---------------------SKQ--VHAHDGGVFSLCMLRDGTLLSGGKDRKIIL- 312 (626)
T ss_pred CC-EEeecCCceEEEEeCCCceE---------------------EeE--eeecCCceEEEEEecCccEeecCccceEEe-
Confidence 97 46888999999999742211 111 114556666664444 34666778877755
Q ss_pred ecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEee
Q 003356 158 SWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV 237 (827)
Q Consensus 158 ~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~ 237 (827)
|+......... ..|.....+|.+.-.... +..+....... .........+...-+-. ...-++..|+..++++++
T Consensus 313 -Wd~~y~k~r~~-elPe~~G~iRtv~e~~~d-i~vGTtrN~iL-~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~g 387 (626)
T KOG2106|consen 313 -WDDNYRKLRET-ELPEQFGPIRTVAEGKGD-ILVGTTRNFIL-QGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCG 387 (626)
T ss_pred -ccccccccccc-cCchhcCCeeEEecCCCc-EEEeeccceEE-EeeecCCceEEEEeccc-ceeeEEcCCChhheeecc
Confidence 76443221111 134444445544332222 32222111000 00111222233322222 445577889999999999
Q ss_pred ccCccccceeecccee-cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEEC
Q 003356 238 SKKGLKLAEFIKIDKE-LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT 316 (827)
Q Consensus 238 ~~~~~~~~~~~~~~~~-~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~s 316 (827)
.|+.+.+|+.....-- .-...+.|+.|+|.| .+|.|...|...|.|..+ +.+-+++. ...++++++|+
T Consensus 388 qdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~--~~lv~~~~--------d~~~ls~v~ys 456 (626)
T KOG2106|consen 388 QDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTET--QDLVTIHT--------DNEQLSVVRYS 456 (626)
T ss_pred CcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccc--ceeEEEEe--------cCCceEEEEEc
Confidence 9999999994333211 222455679999999 999999999999988876 33334444 47899999999
Q ss_pred CCCCEEEEEEcCCcEEEEecc-CCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCC
Q 003356 317 PDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS 392 (827)
Q Consensus 317 pDg~~Lasg~~Dg~v~vWs~~-~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~ 392 (827)
|||.+||+|+.|+.|.+|-+. ++.......-+.-+.++.+.|++|+ +.+.+.+ .++.|.+.........+.-
T Consensus 457 p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds----~~~~~~S~d~eiLyW~~~~~~~~ts~kDv 532 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS----QFLVSNSGDYEILYWKPSECKQITSVKDV 532 (626)
T ss_pred CCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC----ceEEeccCceEEEEEccccCcccceecce
Confidence 999999999999999999985 3444444443323789999999998 7777655 7889966554333221110
Q ss_pred ----cceEEEEec-----------------ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccC
Q 003356 393 ----SERVLIFSF-----------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (827)
Q Consensus 393 ----~~~v~~~~~-----------------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~ 451 (827)
....+-|.. .+.+++|...++++++..-...-+ -.-..|.+|
T Consensus 533 kW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r-----------------A~~he~~gh 595 (626)
T KOG2106|consen 533 KWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR-----------------APSHEYGGH 595 (626)
T ss_pred eeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc-----------------ccceeeccc
Confidence 000011110 122222222222222221111110 012368899
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 452 ~~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
..-|.+++|+-+-..+.+.|.|-.+ .|++
T Consensus 596 s~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 596 SSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 9999999999988888888899988 8875
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.2e-17 Score=163.19 Aligned_cols=277 Identities=15% Similarity=0.173 Sum_probs=200.8
Q ss_pred cCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEE
Q 003356 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (827)
Q Consensus 67 ~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~ll 146 (827)
-|.+.++.|++||..+++++.|..++|||...+........ +.-...+.++......++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s---------------------kkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS---------------------KKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec---------------------ccccccEEEEecCCceEE
Confidence 47789999999999999999999999999975543211110 101123345555566666
Q ss_pred EEec--CCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEE
Q 003356 147 LGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (827)
Q Consensus 147 v~t~--dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (827)
.++. |.+|+.++....+..+ .+.+++..|.+++
T Consensus 73 ~sStk~d~tIryLsl~dNkylR------------------------------------YF~GH~~~V~sL~--------- 107 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR------------------------------------YFPGHKKRVNSLS--------- 107 (311)
T ss_pred EccCCCCCceEEEEeecCceEE------------------------------------EcCCCCceEEEEE---------
Confidence 6655 6677776665443322 2456777788877
Q ss_pred EEEeCCcEEEEeeccCccccceeecccee--cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCC-CcceEEEEeecCC
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWG 301 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~-~~~~~~l~~~~~~ 301 (827)
.+|-+..+++++.|+++++||....++. ..-...-.+||.|.|-++|+|.....|++||++.. .++..++...+
T Consensus 108 -~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-- 184 (311)
T KOG1446|consen 108 -VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD-- 184 (311)
T ss_pred -ecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--
Confidence 6777788899999999999999865543 22223334899999999999999889999999874 34455554421
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccc--eeeeeecCCCCCCccceeecc---eeE
Q 003356 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS--ISSPIVKPNQDCKYEPLMSGT---SMM 376 (827)
Q Consensus 302 ~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~--v~s~~~sp~~~~~~~~l~sg~---~i~ 376 (827)
+.....+.|.|||||++|..+...+.+.+-|.+.|...+++.++.... --+..|+|++ +.+++|. ++.
T Consensus 185 ---~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds----~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 185 ---NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS----KFVLSGSDDGTIH 257 (311)
T ss_pred ---CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC----cEEEEecCCCcEE
Confidence 245678999999999999999999999999999999999988752221 1356789999 8888886 899
Q ss_pred EEccCCceEEEEecC-CcceEEEEec-ceeeeecccCCCeeeeEE
Q 003356 377 QWDEYGYRLYAIEEG-SSERVLIFSF-GKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 377 ~W~~~~~~l~~~~~~-~~~~v~~~~~-~~~~~s~~~d~~~~~w~~ 419 (827)
+|+.++++.+..+.+ +...+.++.| .+...-++.+..+..|..
T Consensus 258 vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 258 VWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred EEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEec
Confidence 999999999888877 4555555556 444444555666666653
No 80
>PTZ00420 coronin; Provisional
Probab=99.80 E-value=2.3e-17 Score=186.52 Aligned_cols=237 Identities=14% Similarity=0.126 Sum_probs=167.8
Q ss_pred Cccccceeeccc---eecCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEcCCCCc-------ceEEEEeecCCCCCCCC
Q 003356 240 KGLKLAEFIKID---KELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESAS-------LIRTVSLYDWGYSMDDT 307 (827)
Q Consensus 240 ~~~~~~~~~~~~---~~~~h~~~v~-va~sp~-~~lla~g~~dg~v~vw~~~~~~~-------~~~~l~~~~~~~~~~h~ 307 (827)
+.+++|+..... .+.+|.+.|. ++|+|+ +.+||+|+.||+|++|++.+.+. .+..+.+ |.
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g--------H~ 125 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG--------HK 125 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec--------CC
Confidence 345667644322 2378998887 999997 78999999999999999976222 1224445 99
Q ss_pred CCeEEEEECCCCCE-EEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCc
Q 003356 308 GPVSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY 383 (827)
Q Consensus 308 ~~V~~l~~spDg~~-Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~ 383 (827)
+.|.+++|+|++.. ||+|+.|++|++||+.+++...++.. ...+.+++|+|++ ..+++++ .+++||+.++
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG----~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKG----NLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCC----CEEEEEecCCEEEEEECCCC
Confidence 99999999999875 57999999999999998887777653 3579999999998 7777664 7999999999
Q ss_pred eEEEEecCCcceE-----EE--Eec-ceeeeecccCC----CeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccC
Q 003356 384 RLYAIEEGSSERV-----LI--FSF-GKCCLNRGVSG----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (827)
Q Consensus 384 ~l~~~~~~~~~~v-----~~--~~~-~~~~~s~~~d~----~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~ 451 (827)
+.+..+.+|.+.+ +. |+. ++.+++++.|+ .+++|++......+.. .....+
T Consensus 200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~-----------------~~ld~~ 262 (568)
T PTZ00420 200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT-----------------MSIDNA 262 (568)
T ss_pred cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE-----------------EEecCC
Confidence 9988888887643 21 223 56788877764 6999998764442100 011223
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEE
Q 003356 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKII 509 (827)
Q Consensus 452 ~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~l 509 (827)
.+.+.....+++|.++++|+.|+.+ +|++.++.-..+. +.. .....+|+++..+..
T Consensus 263 ~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~-~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 263 SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN-EYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred ccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec-ccc-cCCCccceEEccccc
Confidence 3444445556779999999999999 9999877432221 111 111245666665443
No 81
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=4.1e-18 Score=161.98 Aligned_cols=268 Identities=13% Similarity=0.075 Sum_probs=206.8
Q ss_pred cccccceEEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccC
Q 003356 128 FAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (827)
Q Consensus 128 ~~~~~~~v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~ 205 (827)
++...+.|.++ ..||++.+.+.+|.++++ |+.....- + ....
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrL--WNp~rg~l------------i----------------------ktYs 56 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRL--WNPLRGAL------------I----------------------KTYS 56 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEe--ecccccce------------e----------------------eeec
Confidence 34455566555 567899999999999988 65433211 1 1123
Q ss_pred CCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCCCCEEEEEecCCeEE
Q 003356 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVE 281 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~~~lla~g~~dg~v~ 281 (827)
.++..|.+.+ .+.|...++++..|..+.+||..+++. +.+|...+. ++||.+...+++|+.|.+++
T Consensus 57 ghG~EVlD~~----------~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r 126 (307)
T KOG0316|consen 57 GHGHEVLDAA----------LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVR 126 (307)
T ss_pred CCCceeeecc----------ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeE
Confidence 4455565544 778888888888888999999998864 489999998 99999999999999999999
Q ss_pred EEEcCCC-CcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecC
Q 003356 282 LYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (827)
Q Consensus 282 vw~~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp 360 (827)
+||.... .++++.+.. ....|.++..+ +..+++|+.||++|.||+..|++..-.-+| +|+++.|++
T Consensus 127 ~wDCRS~s~ePiQilde--------a~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~ 193 (307)
T KOG0316|consen 127 LWDCRSRSFEPIQILDE--------AKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSK 193 (307)
T ss_pred EEEcccCCCCccchhhh--------hcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEecC
Confidence 9998762 245666655 67789988876 568999999999999999999887665554 799999999
Q ss_pred CCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec-----ceeeeecccCCCeeeeEEEEcCCeEEEEecC
Q 003356 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (827)
Q Consensus 361 ~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~-----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~ 432 (827)
++ ...+.++ ++++-|-++++++...++|...=+.++- ...+++|+.||.+.+|++.....
T Consensus 194 d~----nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~-------- 261 (307)
T KOG0316|consen 194 DG----NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ-------- 261 (307)
T ss_pred CC----CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee--------
Confidence 99 5554444 8888999999999999998766543332 45678999999999999877655
Q ss_pred CCCcceEEEeeeceeeccCCCc-EEEEEEcCCCCEEEEEeCCceEEE
Q 003356 433 DTDELKILHLNLPVSYISQNWP-VQHVAASKDGMFLAVAGLHGLILY 478 (827)
Q Consensus 433 d~~~~~w~~~~~p~~~~~~~~~-I~~va~SpdG~~lavag~dg~iiw 478 (827)
..++..+..+ |.++++.|....+.+|+..+...|
T Consensus 262 ------------~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 262 ------------ISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred ------------eeeeccCCceeEEeeecccCccceeEecCCceece
Confidence 4555666666 789999999888888887776655
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=4.7e-18 Score=193.37 Aligned_cols=259 Identities=15% Similarity=0.215 Sum_probs=187.4
Q ss_pred EEeCCcEEEEee--ccCccccceeecc------------ce---ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCC
Q 003356 226 LYSNGQLMSCSV--SKKGLKLAEFIKI------------DK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE 287 (827)
Q Consensus 226 ~s~dG~~~~~~~--~~~~~~~~~~~~~------------~~---~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~ 287 (827)
++|||..++++. .|+++.+|+.... +. ...|...+. +.|+|||++||+|+.|+.|.+|+...
T Consensus 21 v~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~ 100 (942)
T KOG0973|consen 21 VHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAE 100 (942)
T ss_pred ecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecc
Confidence 889999999988 6777778875411 00 145777775 89999999999999999999999873
Q ss_pred ------CC-----------cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccc
Q 003356 288 ------SA-----------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 350 (827)
Q Consensus 288 ------~~-----------~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~ 350 (827)
.+ +....+.+ |.+.|..++|+||+.+||+++.|++|.+|+..+..++..+++| .
T Consensus 101 ~~~~~~fgs~g~~~~vE~wk~~~~l~~--------H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H-~ 171 (942)
T KOG0973|consen 101 IGSGTVFGSTGGAKNVESWKVVSILRG--------HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH-Q 171 (942)
T ss_pred cCCcccccccccccccceeeEEEEEec--------CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc-c
Confidence 00 12334555 9999999999999999999999999999999999999999998 7
Q ss_pred cceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcc------eEEEEe--c-ceeeeeccc-CCCeeee
Q 003356 351 SSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE------RVLIFS--F-GKCCLNRGV-SGMTYAR 417 (827)
Q Consensus 351 ~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~------~v~~~~--~-~~~~~s~~~-d~~~~~w 417 (827)
+-|..+.|.|.| +++++-+ ++++|......+...+.++-+ .+..++ + |+.+++... .+....-
T Consensus 172 s~VKGvs~DP~G----ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 172 SLVKGVSWDPIG----KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred ccccceEECCcc----CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 789999999999 8888776 899999877777666654322 233333 3 777776532 2211111
Q ss_pred EEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCC-----CC------------EEEEEeCCceE-EEE
Q 003356 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-----GM------------FLAVAGLHGLI-LYD 479 (827)
Q Consensus 418 ~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Spd-----G~------------~lavag~dg~i-iwd 479 (827)
.+.+.+. | ++-..+.+|..|+.+++|+|. .+ .+|+||+|+.+ +|+
T Consensus 248 ~IieR~t--------------W---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 248 AIIERGT--------------W---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred EEEecCC--------------c---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 1122111 2 223468899999999999973 11 68999999999 999
Q ss_pred cCCCeEEeeCCccceEEEEEEEEEEe--CCEEEEEEEee
Q 003356 480 IRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYID 516 (827)
Q Consensus 480 ~~t~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~~~~~ 516 (827)
...-| .+| ...+--+-.|.+|+|. +-.|.+|+++.
T Consensus 311 T~~~R-Pl~-vi~~lf~~SI~DmsWspdG~~LfacS~DG 347 (942)
T KOG0973|consen 311 TALPR-PLF-VIHNLFNKSIVDMSWSPDGFSLFACSLDG 347 (942)
T ss_pred cCCCC-chh-hhhhhhcCceeeeeEcCCCCeEEEEecCC
Confidence 86554 222 2222122347899998 44677776653
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.80 E-value=6.4e-19 Score=179.99 Aligned_cols=256 Identities=16% Similarity=0.176 Sum_probs=193.2
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeeccce-----ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEE
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l 295 (827)
..+-+.++...+++++.|..+++|+....+. +.|..+.+. +.|.++++.+...+.|+.+++|+++. .+...++
T Consensus 179 ~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-~r~~~TL 257 (459)
T KOG0288|consen 179 HDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS-LRLRHTL 257 (459)
T ss_pred ceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc-hhhhhhh
Confidence 3445778878899999999999999765441 134445566 99999999999999999999999998 8888899
Q ss_pred EeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--
Q 003356 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (827)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (827)
.+ |++.|+++.|.-....+++|+.|.+++.||+....|..+.-.. +.+..+..+ ...+++|-
T Consensus 258 sG--------HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~------~~~~~SgH~D 321 (459)
T KOG0288|consen 258 SG--------HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS------ISDVISGHFD 321 (459)
T ss_pred cc--------cccceeeehhhccccceeeccccchhhhhhhhhhheecccccc--ccccceEec------ceeeeecccc
Confidence 99 9999999999998888999999999999999988777665432 223333322 13455554
Q ss_pred -eeEEEccCCceEEEEecCCcceE--EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeec
Q 003356 374 -SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (827)
Q Consensus 374 -~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~ 449 (827)
++++||..+..+......+. .| +.+++ +..+.+.+.|.++.+.++...+-+.. ..-+.-..
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~--------------~sA~g~k~ 386 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT--------------FSAEGFKC 386 (459)
T ss_pred cceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEE--------------eecccccc
Confidence 89999999988887766544 67 45555 77888889999999988765544321 11122233
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEe--CCEEEEE
Q 003356 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVC 512 (827)
Q Consensus 450 ~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~ 512 (827)
+|. .+.+.|||||.|+|+||.||.+ +|++.+++..........+. .|..+.|. +.++++|
T Consensus 387 asD--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~-aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 387 ASD--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA-AITSLSWNPSGSGLLSA 449 (459)
T ss_pred ccc--cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc-ceEEEEEcCCCchhhcc
Confidence 555 5789999999999999999999 99999998765443333332 57788886 5677776
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.9e-18 Score=164.92 Aligned_cols=217 Identities=14% Similarity=0.231 Sum_probs=171.2
Q ss_pred CCCcEE-EEEcCC-CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEE
Q 003356 256 SGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLT 332 (827)
Q Consensus 256 h~~~v~-va~sp~-~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~ 332 (827)
-.+.+. ++||+. ...+++++-||++++||......+++.++. |...|.++.|++ +++.+++++.|++|+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE--------H~~EV~Svdwn~~~r~~~ltsSWD~TiK 130 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE--------HKREVYSVDWNTVRRRIFLTSSWDGTIK 130 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh--------hhhheEEeccccccceeEEeeccCCceE
Confidence 356676 999986 457888899999999998775677888887 999999999999 777888899999999
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec----ceee
Q 003356 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCC 405 (827)
Q Consensus 333 vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~ 405 (827)
+|+..-+.-++|+.+| .+-|...+|+|..+ ..+++.+ +.++||.+...-.+.+..|...+.+.++ ...+
T Consensus 131 LW~~~r~~Sv~Tf~gh-~~~Iy~a~~sp~~~---nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 131 LWDPNRPNSVQTFNGH-NSCIYQAAFSPHIP---NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred eecCCCCcceEeecCC-ccEEEEEecCCCCC---CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEE
Confidence 9999999999999998 77899999999762 4444444 8999998754444457788888888887 4468
Q ss_pred eecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCC-CCEEEEEeCCceE-EEEcCCC
Q 003356 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Spd-G~~lavag~dg~i-iwd~~t~ 483 (827)
+||+.|+.++.||+..-... ...+.+|.-.||.+.|||- -..||+++-|-+. +||.+.+
T Consensus 207 ~Tg~vd~~vr~wDir~~r~p-------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRTP-------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred EecCCCceEEEEehhhcccc-------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 99999999999998776552 2456789999999999997 5689999999999 9998754
Q ss_pred eEEeeCCccceEEEEEEEEEEe
Q 003356 484 KWRVFGDITQEQKIQSKGLLWL 505 (827)
Q Consensus 484 ~w~~f~~~~~e~~~~v~gl~W~ 505 (827)
.- ..+...+..+| |.|+.|.
T Consensus 268 ds-~~e~~~~HtEF-v~g~Dws 287 (311)
T KOG0277|consen 268 DS-AIETVDHHTEF-VCGLDWS 287 (311)
T ss_pred hh-hhhhhhccceE-Eeccccc
Confidence 31 11222233333 4566664
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.79 E-value=9.5e-18 Score=190.91 Aligned_cols=304 Identities=16% Similarity=0.134 Sum_probs=207.1
Q ss_pred CcccEEEEcCCccEEEEEe--cCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecCCC
Q 003356 68 GENLQAVWSPDTKLIAVVT--SSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNK 143 (827)
Q Consensus 68 G~~~~v~wSPDg~~lav~t--~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~ 143 (827)
..+.++..+|||..+|+++ .||.+++|+.+.-.... ..++.. -.+..-....+.++|.|+ ++||.
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~----------~~~~~~-l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK----------EEKNEN-LPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchh----------hhhhcc-cchhheeeccccCceeEEEECCCCC
Confidence 3477999999999999999 89999999986321100 000000 011112245667888887 78899
Q ss_pred eEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceE
Q 003356 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (827)
Q Consensus 144 ~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (827)
++++|++|..+.+|.... .....
T Consensus 83 ~lAsGSDD~~v~iW~~~~--~~~~~------------------------------------------------------- 105 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAE--IGSGT------------------------------------------------------- 105 (942)
T ss_pred eEeeccCcceEEEeeecc--cCCcc-------------------------------------------------------
Confidence 999999998887743331 11000
Q ss_pred EEEEeCCcEEEEeeccCccccceeeccceecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCC
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~ 302 (827)
+ |.+.|. ...+..|.... .+.+|..-|. ++|+|++.++|+++.|++|.+|+..+ .+.++++.+
T Consensus 106 ~-fgs~g~-------~~~vE~wk~~~--~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-F~~~~vl~~----- 169 (942)
T KOG0973|consen 106 V-FGSTGG-------AKNVESWKVVS--ILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-FELLKVLRG----- 169 (942)
T ss_pred c-cccccc-------ccccceeeEEE--EEecCCCccceeccCCCccEEEEecccceEEEEcccc-ceeeeeeec-----
Confidence 0 000010 01112233221 2356887777 99999999999999999999999998 688889999
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccc-----cccceeeeeecCCCCCCccceeecc----
Q 003356 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-----SLSSISSPIVKPNQDCKYEPLMSGT---- 373 (827)
Q Consensus 303 ~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~-----~~~~v~s~~~sp~~~~~~~~l~sg~---- 373 (827)
|.+.|..+.|.|-|++||+-++|++|+||.+..-.+.+++.++ +...+.-+.||||| +.+++.-
T Consensus 170 ---H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG----~~las~nA~n~ 242 (942)
T KOG0973|consen 170 ---HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG----HHLASPNAVNG 242 (942)
T ss_pred ---ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc----CeecchhhccC
Confidence 9999999999999999999999999999998775556555443 12346778899999 7776543
Q ss_pred ---eeEEEccCCceEEEEecCCcceEE--EEec------ce------------eeeecccCCCeeeeEEEEcCCeEEEEe
Q 003356 374 ---SMMQWDEYGYRLYAIEEGSSERVL--IFSF------GK------------CCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (827)
Q Consensus 374 ---~i~~W~~~~~~l~~~~~~~~~~v~--~~~~------~~------------~~~s~~~d~~~~~w~~~~~~~~~~~~~ 430 (827)
++.+-+-++...-..+-||...+. .|.+ .+ .+++|+.|+++.+|.... .|
T Consensus 243 ~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~--~R----- 315 (942)
T KOG0973|consen 243 GKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL--PR----- 315 (942)
T ss_pred CcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC--CC-----
Confidence 444444444444445557777664 4433 12 456777888888876421 11
Q ss_pred cCCCCcceEEEeeeceee--ccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCC
Q 003356 431 SEDTDELKILHLNLPVSY--ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 431 ~~d~~~~~w~~~~~p~~~--~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~ 483 (827)
|--. .-.+.+|..++|||||..|.+++.||.+ +...+.+
T Consensus 316 --------------Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 --------------PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred --------------chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 2111 1235679999999999999999999999 8877643
No 86
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1e-17 Score=165.94 Aligned_cols=223 Identities=14% Similarity=0.237 Sum_probs=177.5
Q ss_pred EEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCC--EEEEEecCCeEEEEEcCCCCcceEEEEee
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQ--ILAVGTRRGVVELYDLAESASLIRTVSLY 298 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~--lla~g~~dg~v~vw~~~~~~~~~~~l~~~ 298 (827)
++.-+|+++++++.|.+|+++|....... ..|.+.++ +.|.+... .|.+|+.||.|.+|++.. ..++.+++.
T Consensus 48 avAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~slK~- 125 (362)
T KOG0294|consen 48 ALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLKSLKA- 125 (362)
T ss_pred EEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEeeeecc-
Confidence 34578999999999999999998866543 56877776 99998875 899999999999999998 788899998
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--eeE
Q 003356 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMM 376 (827)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~i~ 376 (827)
|++.|+.++.+|.|++-.+-+.|+.+++||+-.|+....++-. ...+.+.|+|.| +.++-++ .+-
T Consensus 126 -------H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~G----d~F~v~~~~~i~ 192 (362)
T KOG0294|consen 126 -------HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQG----DHFVVSGRNKID 192 (362)
T ss_pred -------cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCC----CEEEEEeccEEE
Confidence 9999999999999999999999999999999877654333221 123458899888 5444333 778
Q ss_pred EEccCCceEEEEecCCcceEEEEec--ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCc
Q 003356 377 QWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (827)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~ 454 (827)
+|..+...++...... .++.+..| +..+++|+.++.+.+||-.... .+..+.+|...
T Consensus 193 i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~--------------------~~~~~~AH~~R 251 (362)
T KOG0294|consen 193 IYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTDSDT--------------------PLTEFLAHENR 251 (362)
T ss_pred EEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccCCCc--------------------cceeeecchhh
Confidence 8988887776665443 35566666 7788899999999888743311 36778899999
Q ss_pred EEEEEE--cCCCCEEEEEeCCceE-EEEcCCC
Q 003356 455 VQHVAA--SKDGMFLAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 455 I~~va~--SpdG~~lavag~dg~i-iwd~~t~ 483 (827)
|..+.+ .|++.||+++|.||.| +||+...
T Consensus 252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999885 6889999999999999 9999765
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.79 E-value=1.9e-17 Score=170.16 Aligned_cols=226 Identities=13% Similarity=0.140 Sum_probs=189.1
Q ss_pred CcEEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCC
Q 003356 230 GQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (827)
Q Consensus 230 G~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~ 305 (827)
....+++..|.+.-+.+....+. +.||...++ +.++|+...+++++.|..|+||.+.. .........
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~~~~~-------- 301 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPTSSRP-------- 301 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcccccc--------
Confidence 35677777777776777655443 389999999 99999999999999999999999987 554444455
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccc-cccceeeeeecCCCCCCccceeecc---eeEEEccC
Q 003356 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (827)
Q Consensus 306 h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~-~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~ 381 (827)
|.++|+.+...|.|.+|.+++.|+++.+.|..++.+++..... ..-.+++.+|+||| -.+.+|. .+++|+..
T Consensus 302 h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----Lifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 302 HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----LIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred ccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc----eEEeccCCCceEEEEEcC
Confidence 9999999999999999999999999999999999887766542 22358899999999 8888876 88999999
Q ss_pred CceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeec-cCCCcEEE
Q 003356 382 GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQH 457 (827)
Q Consensus 382 ~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~-~~~~~I~~ 457 (827)
...-...+.+|.+.|..++| |-.+++++.|+.+++||+.+..+ .+++. ....++.+
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n--------------------~kt~~l~~~~~v~s 437 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN--------------------FKTIQLDEKKEVNS 437 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc--------------------cceeecccccccee
Confidence 88888888999999988888 78999999999999999987665 22232 33447999
Q ss_pred EEEcCCCCEEEEEeCCceE-EEEcCCCeEEee
Q 003356 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (827)
Q Consensus 458 va~SpdG~~lavag~dg~i-iwd~~t~~w~~f 488 (827)
+.|++.|+|++++|.|-.+ +++-.++.|...
T Consensus 438 ~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 438 LSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred EEEcCCCCeEEeecceeEEEEEecccccceee
Confidence 9999999999999999999 999999999864
No 88
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.1e-16 Score=168.85 Aligned_cols=282 Identities=13% Similarity=0.158 Sum_probs=177.6
Q ss_pred CcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeec-CCCeEE
Q 003356 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHML 146 (827)
Q Consensus 68 G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-d~~~ll 146 (827)
.+++++++|.+++.||++=++|+|.+|++..+- -.+..+. .+.+.+|-+++. ++.+|+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w----------------~~~~vi~-----g~~drsIE~L~W~e~~RLF 84 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW----------------FLEPVIH-----GPEDRSIESLAWAEGGRLF 84 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCc----------------eeeEEEe-----cCCCCceeeEEEccCCeEE
Confidence 457899999999999999999999999996421 1111111 123334444443 478899
Q ss_pred EEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEE
Q 003356 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (827)
Q Consensus 147 v~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (827)
....+|.|.. ||.....+. .......+.|.+|+-++......+.
T Consensus 85 S~g~sg~i~E--wDl~~lk~~----------------------------------~~~d~~gg~IWsiai~p~~~~l~Ig 128 (691)
T KOG2048|consen 85 SSGLSGSITE--WDLHTLKQK----------------------------------YNIDSNGGAIWSIAINPENTILAIG 128 (691)
T ss_pred eecCCceEEE--EecccCcee----------------------------------EEecCCCcceeEEEeCCccceEEee
Confidence 9999999876 665443322 1122345668888866655555555
Q ss_pred EeCCcEEEEeeccCccccceeecccee--cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCC
Q 003356 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (827)
Q Consensus 227 s~dG~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~ 304 (827)
+.||-++......+.+. .+.. .......+++|+|++..||.||.||.|++||+.. +...+.....--+.+.
T Consensus 129 cddGvl~~~s~~p~~I~------~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~-~~t~~~~~~~~d~l~k 201 (691)
T KOG2048|consen 129 CDDGVLYDFSIGPDKIT------YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS-GQTLHIITMQLDRLSK 201 (691)
T ss_pred cCCceEEEEecCCceEE------EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC-CceEEEeeeccccccc
Confidence 55664444333222211 1111 1224456699999999999999999999999988 5444422211111121
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeec-c--eeEEEccC
Q 003356 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T--SMMQWDEY 381 (827)
Q Consensus 305 ~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg-~--~i~~W~~~ 381 (827)
...--|+++.|-.|+ .||+|..-|+|++||...+.++.+..-| .+.|.+++..+++ ..+.++ . ++..+...
T Consensus 202 ~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~----d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 202 REPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH-DADVLALAVADNE----DRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred CCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh-hcceeEEEEcCCC----CeEEEccCCCceEEEEec
Confidence 133457888888665 6888888899999999999999888877 6789999998876 444444 3 44444443
Q ss_pred Cc-eEEEEe---cCCcceEEEEec-ceeeeecccCCCeeeeEE
Q 003356 382 GY-RLYAIE---EGSSERVLIFSF-GKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 382 ~~-~l~~~~---~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~ 419 (827)
+. .-|... ..|...+.++.. ...+.+|+.|.++.+-..
T Consensus 276 ~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 276 TNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSS 318 (691)
T ss_pred CCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccc
Confidence 32 213332 234445544444 447778888887755443
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.2e-18 Score=187.10 Aligned_cols=223 Identities=17% Similarity=0.214 Sum_probs=187.4
Q ss_pred eCCcEEEEeeccCccccceeeccce---------ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCC-cceEEEE
Q 003356 228 SNGQLMSCSVSKKGLKLAEFIKIDK---------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVS 296 (827)
Q Consensus 228 ~dG~~~~~~~~~~~~~~~~~~~~~~---------~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~-~~~~~l~ 296 (827)
++|+++++++.|+.++.|+...... +..|.+++. ++.-.+++.+++++.|.+|++|+..... -+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 6788899999999999998753322 256889988 8888899999999999999999998732 5666777
Q ss_pred eecCCCCCCCCCCeEEEEE-CCCCCEEEEEEcCCcEEEEeccCCe--eE--------EEeccccccceeeeeecCCCCCC
Q 003356 297 LYDWGYSMDDTGPVSCIAW-TPDNSAFAVGWKSRGLTVWSVSGCR--LM--------STIRQISLSSISSPIVKPNQDCK 365 (827)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~-spDg~~Lasg~~Dg~v~vWs~~~~~--l~--------~tl~~~~~~~v~s~~~sp~~~~~ 365 (827)
. |+..|.|+++ -++...+|+|+-|+.|.+||+..+. ++ +.+......++.+++.++.+
T Consensus 115 ~--------H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~--- 183 (735)
T KOG0308|consen 115 T--------HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG--- 183 (735)
T ss_pred c--------ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc---
Confidence 7 9999999999 8899999999999999999998762 22 23331225678888888887
Q ss_pred ccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceE
Q 003356 366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (827)
Q Consensus 366 ~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w 439 (827)
..+++|+ -+++||+.+.+-++-+.||...|.++-. |..++++|.|+++++|++.+...
T Consensus 184 -t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC--------------- 247 (735)
T KOG0308|consen 184 -TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC--------------- 247 (735)
T ss_pred -eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccce---------------
Confidence 7888887 6889999999999989999998855544 99999999999999999987666
Q ss_pred EEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 440 ~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
..+|..|...|+++..+|+-.++++||+||.+ .=|+.+
T Consensus 248 -----l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 248 -----LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred -----eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 67899999999999999999999999999998 777765
No 90
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=7.4e-17 Score=174.58 Aligned_cols=392 Identities=13% Similarity=0.105 Sum_probs=246.4
Q ss_pred cccEEEEcC---CccEEEEEecCcEEEEEEEEecCceeecC--------CCCCCCceeeeEeeEeecccccccccceEEE
Q 003356 69 ENLQAVWSP---DTKLIAVVTSSLYLHIFKVQITEKSIQIG--------GKQPSGLFFIKISLVLNEQLPFAEKGLSVSN 137 (827)
Q Consensus 69 ~~~~v~wSP---Dg~~lav~t~dg~l~l~~v~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~ 137 (827)
-+.+++|+. |.-+||+++.|.|||||++.......... ...+.-..+..+.+.+.....+.+++.=|.+
T Consensus 193 WIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~s 272 (764)
T KOG1063|consen 193 WIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYS 272 (764)
T ss_pred hhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEE
Confidence 345666654 34589999999999999997654211000 0000001122233444444455677777877
Q ss_pred e--ecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEE
Q 003356 138 I--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (827)
Q Consensus 138 ~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 215 (827)
+ .+.+..|+.++.|.++.+ |..+...-.- .....+-.+.
T Consensus 273 v~W~p~~~~LLSASaDksmii--W~pd~~tGiW-------------------------------------v~~vRlGe~g 313 (764)
T KOG1063|consen 273 VWWHPEGLDLLSASADKSMII--WKPDENTGIW-------------------------------------VDVVRLGEVG 313 (764)
T ss_pred EEEccchhhheecccCcceEE--EecCCccceE-------------------------------------EEEEEeeccc
Confidence 7 455567999999999876 5443321110 0000111111
Q ss_pred EcCCcceEEEEEeCCcEEEEeeccCccccceeecccee------cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCC
Q 003356 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES 288 (827)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~ 288 (827)
.+..+-.-+.+++++..+++.+..+..++|...+...| .||.+.|. ++|+|.|.+|.+.+.|.|-|+|---..
T Consensus 314 g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~ 393 (764)
T KOG1063|consen 314 GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR 393 (764)
T ss_pred ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc
Confidence 22222233556777777777777777777774433222 68999999 999999999999999999999765421
Q ss_pred CcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC----------C-----e-------eE----
Q 003356 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG----------C-----R-------LM---- 342 (827)
Q Consensus 289 ~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~----------~-----~-------l~---- 342 (827)
....+.+...+. |.-..+|+++-+....+++|.+...+|+++... + . .+
T Consensus 394 q~~wHEiaRPQi-----HGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG 468 (764)
T KOG1063|consen 394 QQEWHEIARPQI-----HGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG 468 (764)
T ss_pred ccceeeeccccc-----ccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence 222333332222 888899999999767888888889999997520 0 0 00
Q ss_pred --------------------------------------------------EEeccccccceeeeeecCCCCCCccceeec
Q 003356 343 --------------------------------------------------STIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (827)
Q Consensus 343 --------------------------------------------------~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg 372 (827)
..|.+| -..|.+++.+|++ ..++++
T Consensus 469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~g----nliASa 543 (764)
T KOG1063|consen 469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH-GYEVYALAISPTG----NLIASA 543 (764)
T ss_pred ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC-ceeEEEEEecCCC----CEEeeh
Confidence 000122 2357788888887 777766
Q ss_pred c--------eeEEEccCCceEEEEecCCcceE--EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEE
Q 003356 373 T--------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (827)
Q Consensus 373 ~--------~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~ 441 (827)
. -+++|+..+-.....+.+|+-.| +.|++ ++.+++.|.|.+..+|....+...-+ .
T Consensus 544 CKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~----------~--- 610 (764)
T KOG1063|consen 544 CKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEF----------R--- 610 (764)
T ss_pred hhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhh----------h---
Confidence 5 67889987766666778898888 55666 99999999999999998744332100 0
Q ss_pred eeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCC-ccceEEEEEEEEEEeC-----C-EEEEEE
Q 003356 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLG-----K-IIVVCN 513 (827)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~-~~~e~~~~v~gl~W~~-----~-~li~~~ 513 (827)
-.....|.--|+.+.|+||++++|+|++|..+ +|....++=+.... ........|+.+.|.. . .+++.+
T Consensus 611 ---fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavG 687 (764)
T KOG1063|consen 611 ---FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVG 687 (764)
T ss_pred ---hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEE
Confidence 11245788889999999999999999999999 99988764222211 1112223466666641 1 233332
Q ss_pred EeeCCCcEEEEEeeCC
Q 003356 514 YIDSSNTYELLFYPRY 529 (827)
Q Consensus 514 ~~~~~~~~~lrly~~~ 529 (827)
. ...+|-+|+++
T Consensus 688 l----e~GeI~l~~~~ 699 (764)
T KOG1063|consen 688 L----EKGEIVLWRRK 699 (764)
T ss_pred e----cccEEEEEecc
Confidence 2 23678888764
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.5e-17 Score=173.71 Aligned_cols=287 Identities=14% Similarity=0.137 Sum_probs=212.8
Q ss_pred cccceeecccee-cCCCCcEEEEEcCCCCE-EEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCC
Q 003356 242 LKLAEFIKIDKE-LGSGDAVCASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (827)
Q Consensus 242 ~~~~~~~~~~~~-~~h~~~v~va~sp~~~l-la~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg 319 (827)
.+.|...+.... ..|.....++|||...+ +|+.+ .-.|.+|+..+ ....+++.. -...|.++.|..||
T Consensus 11 ~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~-~~~~k~~sr--------Fk~~v~s~~fR~DG 80 (487)
T KOG0310|consen 11 IRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVT-RSVRKTFSR--------FKDVVYSVDFRSDG 80 (487)
T ss_pred chhhhhhcccccccccCcceeEecCCCCCCceEEec-ccEEEEEecch-hhhhhhHHh--------hccceeEEEeecCC
Confidence 345654443332 33444444999996543 33333 45689999876 555555555 56679999999999
Q ss_pred CEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceE
Q 003356 320 SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV 396 (827)
Q Consensus 320 ~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v 396 (827)
++||+|.+.|.|+|+|..+...+.++.+| +.++....|+|.+ +..+.+|+ ..+.|+..+......+.+|++.|
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-~apv~~~~f~~~d---~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV 156 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLYAH-QAPVHVTKFSPQD---NTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV 156 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHhhc-cCceeEEEecccC---CeEEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence 99999999999999997776677788887 7899999999987 24566666 78899999888766788999999
Q ss_pred EEEec----ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeC
Q 003356 397 LIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (827)
Q Consensus 397 ~~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~ 472 (827)
.+.++ ...++|||+|+++++||...... +..-++|.-||.++.+-|.|..+|+||.
T Consensus 157 R~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--------------------~v~elnhg~pVe~vl~lpsgs~iasAgG 216 (487)
T KOG0310|consen 157 RCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--------------------RVVELNHGCPVESVLALPSGSLIASAGG 216 (487)
T ss_pred EeeccccCCCeEEEecCCCceEEEEEeccCCc--------------------eeEEecCCCceeeEEEcCCCCEEEEcCC
Confidence 77666 44689999999999999877655 3345688999999999999999999998
Q ss_pred CceEEEEcCCCeEEeeCCccceEEEEEEEEEEe--CCEEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEecCCccEEEE
Q 003356 473 HGLILYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD 550 (827)
Q Consensus 473 dg~iiwd~~t~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~~~~~~l~ 550 (827)
+..-+||+.+|.-.+.....|.+ +|++|... +.-|++++.+ ..+++|+. ++..+.+...+|+|++.+.
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~K--tVTcL~l~s~~~rLlS~sLD-----~~VKVfd~---t~~Kvv~s~~~~~pvLsia 286 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNK--TVTCLRLASDSTRLLSGSLD-----RHVKVFDT---TNYKVVHSWKYPGPVLSIA 286 (487)
T ss_pred CeEEEEEecCCceehhhhhcccc--eEEEEEeecCCceEeecccc-----cceEEEEc---cceEEEEeeecccceeeEE
Confidence 87669999988754432222333 45555554 4778887444 56888874 4667899999999998887
Q ss_pred c--cCCEEEEEEcCceEEEEEEEE
Q 003356 551 V--YEDYILVTYRPFDVHIFHVKL 572 (827)
Q Consensus 551 ~--~~~~llV~~~~~~i~l~~~~~ 572 (827)
. .++.++++..||-+.+=+.+.
T Consensus 287 vs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 287 VSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ecCCCceEEEecccceeeeehhhc
Confidence 5 346777777777655554443
No 92
>PTZ00421 coronin; Provisional
Probab=99.78 E-value=5.5e-17 Score=182.74 Aligned_cols=196 Identities=13% Similarity=0.189 Sum_probs=147.8
Q ss_pred CCCcccEEEEEEcCCcceEEEEEe-CCcEEEEeeccCccccceeeccc----------eecCCCCcEE-EEEcCCC-CEE
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAVC-ASIAPEQ-QIL 271 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~~~~~~~~~~~~~~----------~~~~h~~~v~-va~sp~~-~ll 271 (827)
..+...|.+++ ++| |++++++++.|+++++|+..... .+.+|...+. ++|+|++ .+|
T Consensus 72 ~GH~~~V~~v~----------fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 72 LGQEGPIIDVA----------FNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVL 141 (493)
T ss_pred eCCCCCEEEEE----------EcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEE
Confidence 45666777776 555 77888888889999999875431 2368988887 9999985 699
Q ss_pred EEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecccccc
Q 003356 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 351 (827)
Q Consensus 272 a~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~ 351 (827)
|+|+.|++|++||+.+ +..+..+.. |.+.|.+++|+|||..||+|+.|++|++||+.++..+.++.+|...
T Consensus 142 aSgs~DgtVrIWDl~t-g~~~~~l~~--------h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 142 ASAGADMVVNVWDVER-GKAVEVIKC--------HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred EEEeCCCEEEEEECCC-CeEEEEEcC--------CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 9999999999999988 777777777 9999999999999999999999999999999999888888877433
Q ss_pred ceeeeeecCCCCCCccceee-c------ceeEEEccCCce-EEEEecCCc-ceE--EEEec-ceeeeecc-cCCCeeeeE
Q 003356 352 SISSPIVKPNQDCKYEPLMS-G------TSMMQWDEYGYR-LYAIEEGSS-ERV--LIFSF-GKCCLNRG-VSGMTYARQ 418 (827)
Q Consensus 352 ~v~s~~~sp~~~~~~~~l~s-g------~~i~~W~~~~~~-l~~~~~~~~-~~v--~~~~~-~~~~~s~~-~d~~~~~w~ 418 (827)
....+.|.+++ ..+++ | ..+.+||..... .+.....+. ..+ ..++. ++.+++++ .|+.+++|+
T Consensus 213 ~~~~~~w~~~~----~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 213 KSQRCLWAKRK----DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFE 288 (493)
T ss_pred cceEEEEcCCC----CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence 34556777765 44443 2 168999987643 333322222 222 23444 56666666 599999999
Q ss_pred EEEcC
Q 003356 419 VIYGE 423 (827)
Q Consensus 419 ~~~~~ 423 (827)
+..+.
T Consensus 289 l~~~~ 293 (493)
T PTZ00421 289 LMNER 293 (493)
T ss_pred eeCCc
Confidence 87543
No 93
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.78 E-value=4e-15 Score=161.32 Aligned_cols=301 Identities=13% Similarity=0.143 Sum_probs=176.6
Q ss_pred eEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCcc---EEEEEecCcEEEEEEEEecCceeecCCC
Q 003356 32 GLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK---LIAVVTSSLYLHIFKVQITEKSIQIGGK 108 (827)
Q Consensus 32 ~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~---~lav~t~dg~l~l~~v~~~~~~~~~~~~ 108 (827)
.++|.+....|.+|+-.|+ .......+ +.+.+.++.|-|+++ .+++|..||.|.+|.+.-...
T Consensus 26 ~~vafGa~~~Iav~dp~k~-~i~t~l~G------H~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~------- 91 (764)
T KOG1063|consen 26 GLVAFGAGPAIAVADPEKI-LIVTTLDG------HVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL------- 91 (764)
T ss_pred ceEEecCCceEEEeCcccc-eeEEeccC------CccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe-------
Confidence 3667778888999998543 22222221 347789999999999 899999999999999972110
Q ss_pred CCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCc-----ceeecccCCCCcccceec
Q 003356 109 QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYG-----AFELVHSSNDSSVAALSH 183 (827)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~-----~~~l~~~p~~~~~i~~~~ 183 (827)
..+. .+.++...+.|+......+.+...++.+.+ |+.+... ..++..+..=.-|+..++
T Consensus 92 ----~~i~----------~~~g~~~~~~cv~a~~~~~~~~~ad~~v~v--w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~ 155 (764)
T KOG1063|consen 92 ----IKIY----------TIQGHCKECVCVVARSSVMTCKAADGTVSV--WDKQQDEVFLLAVLRFEIKEAIPLCLAALK 155 (764)
T ss_pred ----EEEE----------eecCcceeEEEEEeeeeEEEeeccCceEEE--eecCCCceeeehheehhhhhHhhHHHhhhc
Confidence 0111 122333344444433333333467788776 4432211 111110000001111111
Q ss_pred ccCCCC-c--c----------ccccCCc-eeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeec
Q 003356 184 HFPSNG-L--A----------SVDTSGA-FVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK 249 (827)
Q Consensus 184 ~s~~~~-~--~----------~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~ 249 (827)
++. + + .+...+. .....+.++..-|.+++|..... |.-++++++.|..+++|...-
T Consensus 156 ---~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~-------~~~~laS~SQD~yIRiW~i~~ 225 (764)
T KOG1063|consen 156 ---NNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG-------DDLLLASSSQDRYIRIWRIVL 225 (764)
T ss_pred ---cCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC-------CcEEEEecCCceEEEEEEEEe
Confidence 111 0 0 0000110 11112233444444444433322 344666777788888887542
Q ss_pred cc------------------------e----------ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcce-E
Q 003356 250 ID------------------------K----------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLI-R 293 (827)
Q Consensus 250 ~~------------------------~----------~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~-~ 293 (827)
.. . +.||++.|. +.|+|.+..|.+++.|.++.+|.-++..+.. .
T Consensus 226 ~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~ 305 (764)
T KOG1063|consen 226 GDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD 305 (764)
T ss_pred cCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence 11 0 148999999 9999999999999999999999987643322 2
Q ss_pred EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee---EEEeccccccceeeeeecCCCCCCcccee
Q 003356 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDCKYEPLM 370 (827)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l---~~tl~~~~~~~v~s~~~sp~~~~~~~~l~ 370 (827)
..+....+ +..+.-..+-|+|++..+++-+.-|++++|-...... .-.+.+| .+.|..++|+|.| +.++
T Consensus 306 ~vRlGe~g---g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH-~~~V~dv~W~psG----eflL 377 (764)
T KOG1063|consen 306 VVRLGEVG---GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH-VDGVKDVDWDPSG----EFLL 377 (764)
T ss_pred EEEeeccc---ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc-cccceeeeecCCC----CEEE
Confidence 22221111 2466789999999999999988889999998443322 1223355 7889999999999 8888
Q ss_pred ecc---eeEEEcc
Q 003356 371 SGT---SMMQWDE 380 (827)
Q Consensus 371 sg~---~i~~W~~ 380 (827)
+.+ +.+++..
T Consensus 378 svs~DQTTRlFa~ 390 (764)
T KOG1063|consen 378 SVSLDQTTRLFAR 390 (764)
T ss_pred Eeccccceeeecc
Confidence 776 4444433
No 94
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.78 E-value=2.8e-16 Score=173.47 Aligned_cols=409 Identities=14% Similarity=0.121 Sum_probs=250.4
Q ss_pred EEec---ceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCcee
Q 003356 27 FKVN---NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (827)
Q Consensus 27 fspd---g~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~ 103 (827)
+.|+ ++.+...+.++++|||++ .+..+.++.+-. ..++++.=+|-=..+|+|+.+|+|.++++..++.-.
T Consensus 166 ~HP~TYLNKIvvGs~~G~lql~Nvr-t~K~v~~f~~~~------s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~ 238 (910)
T KOG1539|consen 166 LHPSTYLNKIVVGSSQGRLQLWNVR-TGKVVYTFQEFF------SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM 238 (910)
T ss_pred ecchhheeeEEEeecCCcEEEEEec-cCcEEEEecccc------cceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence 4565 445555688999999995 777777765432 456788888888899999999999999997665311
Q ss_pred ecC-----------CCC---------C-CCceeeeEeeEeecccccccccceEEEee-cCCC-eEEEEecCCcEEEEecC
Q 003356 104 QIG-----------GKQ---------P-SGLFFIKISLVLNEQLPFAEKGLSVSNIV-SDNK-HMLLGLSDGSLYSISWK 160 (827)
Q Consensus 104 ~~~-----------~~~---------~-~~~~~~~~~l~~~~~~~~~~~~~~v~~~~-~d~~-~llv~t~dg~i~~~~w~ 160 (827)
... ..+ . ..+.+|+++-+....+....+.+++.... +.++ -++.+..|+.++.|-.|
T Consensus 239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence 110 001 1 12556666433333333334444444332 2333 45556678889888777
Q ss_pred CccCcceeecccCCCCcccceecccCCCC--ccccc-----------------cCCcee------cc----ccCCCcccE
Q 003356 161 GEFYGAFELVHSSNDSSVAALSHHFPSNG--LASVD-----------------TSGAFV------SD----HKFPISSAI 211 (827)
Q Consensus 161 ~~~~~~~~l~~~p~~~~~i~~~~~s~~~~--~~~~~-----------------~~~~~~------~~----~~~~~~~~i 211 (827)
.....+..+.....+.+....+.|...+. +.+.. +.+... +. ....+-.+|
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 43333322322223333333333321111 00000 000000 00 000111233
Q ss_pred EEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce---ec-------CCCCcEEEEEcCCCCEEEEEecCCeEE
Q 003356 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---EL-------GSGDAVCASIAPEQQILAVGTRRGVVE 281 (827)
Q Consensus 212 ~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~---~~-------~h~~~v~va~sp~~~lla~g~~dg~v~ 281 (827)
..+++...-. .....++.+..++.....|+...... .. ....+.++++++-|++...|+..|+|.
T Consensus 399 ~~fa~~~~RE-----~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id 473 (910)
T KOG1539|consen 399 VEFAFENARE-----KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID 473 (910)
T ss_pred eeeecccchh-----hhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence 3333222110 00112333333444444565442211 11 112344589999999999999999999
Q ss_pred EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCC
Q 003356 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (827)
Q Consensus 282 vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (827)
+|+++. +-....+ +-++.|.++|+.++...-++.+++++.+|-+++||..++.+..+++-. ..+..+.++..
T Consensus 474 ~fNmQS-Gi~r~sf-----~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--~~~~~iv~hr~ 545 (910)
T KOG1539|consen 474 RFNMQS-GIHRKSF-----GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG--SSITGIVYHRV 545 (910)
T ss_pred EEEccc-Ceeeccc-----ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC--CCcceeeeeeh
Confidence 999987 4433333 234559999999999999999999999999999999998888777643 34555555544
Q ss_pred CCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCC
Q 003356 362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (827)
Q Consensus 362 ~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~ 435 (827)
. ..++.+. .+++.|..+-+....+.+|.++|.++.| +|.+++++.|++++.||+..+..
T Consensus 546 s----~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l----------- 610 (910)
T KOG1539|consen 546 S----DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL----------- 610 (910)
T ss_pred h----hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce-----------
Confidence 3 3333332 7889999988888889999999965555 99999999999999999876643
Q ss_pred cceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE--EEEc
Q 003356 436 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDI 480 (827)
Q Consensus 436 ~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i--iwd~ 480 (827)
... ..-..|..++.|||+|.+||++..|+.- +|.-
T Consensus 611 ---------ID~-~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 611 ---------IDG-LLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ---------eee-EecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 111 1224578899999999999999888543 7753
No 95
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.77 E-value=3.7e-17 Score=184.34 Aligned_cols=262 Identities=16% Similarity=0.189 Sum_probs=207.2
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEE-EEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 260 v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~-l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
+|..+. ...+++|+.|++|++|+..+ +..+.+ +.+ |.+.|+++++..-+..|++|+.|.+++|||..+
T Consensus 212 ~~~q~~--~~~~~~~s~~~tl~~~~~~~-~~~i~~~l~G--------H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 212 LCLQLH--DGFFKSGSDDSTLHLWDLNN-GYLILTRLVG--------HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred hhheee--cCeEEecCCCceeEEeeccc-ceEEEeeccC--------CCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 345555 67889999999999999988 666665 888 999999999998788999999999999999999
Q ss_pred CeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCe
Q 003356 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMT 414 (827)
Q Consensus 339 ~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~ 414 (827)
+.+.+++.+| .+.+.++...+ ..+.+|+ ++++|+..++.++.+..+|...|.++.. ...+++|+.|+++
T Consensus 281 g~C~~~l~gh-~stv~~~~~~~------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 281 GECTHSLQGH-TSSVRCLTIDP------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTV 353 (537)
T ss_pred CcEEEEecCC-CceEEEEEccC------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceE
Confidence 9999999998 67777776543 3455655 9999999999999999999999988888 8889999999999
Q ss_pred eeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCC-eEEeeCCcc
Q 003356 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWRVFGDIT 492 (827)
Q Consensus 415 ~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~-~w~~f~~~~ 492 (827)
++|++..+.- ..++.+|...|.++.+.+. .++++|+-|+++ +||+.++ +.... ..
T Consensus 354 ~VW~~~~~~c--------------------l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t--l~ 410 (537)
T KOG0274|consen 354 KVWDPRTGKC--------------------LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT--LQ 410 (537)
T ss_pred EEEEhhhcee--------------------eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh--hc
Confidence 9999875443 6788899999999988777 899999999999 9999998 43221 11
Q ss_pred ceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEecC--CccEEEEccCCEEEEEEcCceEEEEEE
Q 003356 493 QEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL--AKPIVMDVYEDYILVTYRPFDVHIFHV 570 (827)
Q Consensus 493 ~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~--~~~~~l~~~~~~llV~~~~~~i~l~~~ 570 (827)
+ +...|.++.-.++.|+.+.++ ..+++|..... ..+....-+ ..+..+....+.++..+.++.+.+|++
T Consensus 411 ~-h~~~v~~l~~~~~~Lvs~~aD-----~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 411 G-HTSLVSSLLLRDNFLVSSSAD-----GTIKLWDAEEG---ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDL 481 (537)
T ss_pred C-CcccccccccccceeEecccc-----ccEEEeecccC---ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEec
Confidence 1 222356777778888887554 37999966422 223333222 334455555677888888999999987
Q ss_pred E
Q 003356 571 K 571 (827)
Q Consensus 571 ~ 571 (827)
.
T Consensus 482 ~ 482 (537)
T KOG0274|consen 482 R 482 (537)
T ss_pred c
Confidence 6
No 96
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=1.3e-16 Score=154.32 Aligned_cols=286 Identities=13% Similarity=0.112 Sum_probs=190.2
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe---ecCC
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI---VSDN 142 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~---~~d~ 142 (827)
+.+.+.+|+|.-||..||.++.|+++++|+++..... ......++..+|--+ ...+
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------------~~~~~~gh~~svdql~w~~~~~ 77 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------------KELVYRGHTDSVDQLCWDPKHP 77 (313)
T ss_pred hhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------------hhhcccCCCcchhhheeCCCCC
Confidence 4477889999999999999999999999999854210 001112222222222 2334
Q ss_pred CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcce
Q 003356 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (827)
Q Consensus 143 ~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (827)
+.+++++.|..+++ |+....... ..+. ....+.
T Consensus 78 d~~atas~dk~ir~--wd~r~~k~~--------------------------------------------~~i~-~~~eni 110 (313)
T KOG1407|consen 78 DLFATASGDKTIRI--WDIRSGKCT--------------------------------------------ARIE-TKGENI 110 (313)
T ss_pred cceEEecCCceEEE--EEeccCcEE--------------------------------------------EEee-ccCcce
Confidence 67888888888887 443222111 0111 112244
Q ss_pred EEEEEeCCcEEEEeeccCccccceeecccee--cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
.+..+|+|..++++..|..+...+..+.+.. .....-+. ++|+.++.++..-...|+|.|-.... -+++.+++.
T Consensus 111 ~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps-Lkpv~si~A-- 187 (313)
T KOG1407|consen 111 NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS-LKPVQSIKA-- 187 (313)
T ss_pred EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc-ccccccccc--
Confidence 5667788888887777766666655543322 11122344 88998888888877789999988776 777888888
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEc
Q 003356 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD 379 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~ 379 (827)
|+....|++|+|+|+++|+|+.|..+.+||+..-.|.+.+.-+ .-+|..+.|+.++ +
T Consensus 188 ------H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl-dwpVRTlSFS~dg----~------------ 244 (313)
T KOG1407|consen 188 ------HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL-DWPVRTLSFSHDG----R------------ 244 (313)
T ss_pred ------CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc-cCceEEEEeccCc----c------------
Confidence 9999999999999999999999999999999876666655444 3345555555555 4
Q ss_pred cCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEE
Q 003356 380 EYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVA 459 (827)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va 459 (827)
+++++|.|..+-+-.+.+|+. .| -+.+++|..+||
T Consensus 245 ------------------------~lASaSEDh~IDIA~vetGd~-------------~~--------eI~~~~~t~tVA 279 (313)
T KOG1407|consen 245 ------------------------MLASASEDHFIDIAEVETGDR-------------VW--------EIPCEGPTFTVA 279 (313)
T ss_pred ------------------------eeeccCccceEEeEecccCCe-------------EE--------EeeccCCceeEE
Confidence 444555555444443333332 11 123567889999
Q ss_pred EcCCCCEEEEEeCCceEEEEcCCCeEEeeCC
Q 003356 460 ASKDGMFLAVAGLHGLILYDIRQKKWRVFGD 490 (827)
Q Consensus 460 ~SpdG~~lavag~dg~iiwd~~t~~w~~f~~ 490 (827)
|+|....||-|+.|.--=++.+.|.-|+||-
T Consensus 280 WHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 280 WHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred ecCCCceeeEEecCCCCccccccceeEEecC
Confidence 9999999999998764455555566666653
No 97
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.2e-17 Score=185.75 Aligned_cols=248 Identities=16% Similarity=0.177 Sum_probs=166.4
Q ss_pred CCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCC---------------------------cc--e--EEEE------
Q 003356 255 GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA---------------------------SL--I--RTVS------ 296 (827)
Q Consensus 255 ~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~---------------------------~~--~--~~l~------ 296 (827)
.|.++|+ +.||+||++||+|++||.|+||.+.... .. + +...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7999999 9999999999999999999999986500 00 0 0000
Q ss_pred -------eecCCC-------CCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 297 -------LYDWGY-------SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 297 -------~~~~~~-------~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
.+-..+ -.+|++.|..++||-+ ++|.+++.|.|||+|++....|++++.. .+-|++++|+|.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~H--ndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSH--NDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEec--CCeeEEEEecccC
Confidence 000000 1289999999999976 5788999999999999999999998863 6789999999987
Q ss_pred CCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEe
Q 003356 363 DCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (827)
Q Consensus 363 ~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~ 442 (827)
+ . ++++||.|+.+++|.+....- . .|
T Consensus 422 D---r------------------------------------yFiSGSLD~KvRiWsI~d~~V--v----------~W--- 447 (712)
T KOG0283|consen 422 D---R------------------------------------YFISGSLDGKVRLWSISDKKV--V----------DW--- 447 (712)
T ss_pred C---C------------------------------------cEeecccccceEEeecCcCee--E----------ee---
Confidence 2 3 345666666666666543211 0 01
Q ss_pred eeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCc-----cceEEEEEEEEEEe---CCEEEEEE
Q 003356 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDI-----TQEQKIQSKGLLWL---GKIIVVCN 513 (827)
Q Consensus 443 ~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~-----~~e~~~~v~gl~W~---~~~li~~~ 513 (827)
..-..-|++++|+|||++.++|+-+|.. +|++...+..+-... ...+.-.|+|++.. .+-++|.
T Consensus 448 ------~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT- 520 (712)
T KOG0283|consen 448 ------NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT- 520 (712)
T ss_pred ------hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe-
Confidence 0111348999999999999999999999 999987764321110 00111258899886 2324443
Q ss_pred EeeCCCcEEEEEeeCC--CCCccceEEEEecCCcc-EEEEccCCEEEEEEcCceEEEEEEE
Q 003356 514 YIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKP-IVMDVYEDYILVTYRPFDVHIFHVK 571 (827)
Q Consensus 514 ~~~~~~~~~lrly~~~--~l~~~~~~~~~~l~~~~-~~l~~~~~~llV~~~~~~i~l~~~~ 571 (827)
+.+..||+|... .+-...-. -....++. -.++..+.+++.++.|..++||++.
T Consensus 521 ----SnDSrIRI~d~~~~~lv~KfKG-~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 521 ----SNDSRIRIYDGRDKDLVHKFKG-FRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ----cCCCceEEEeccchhhhhhhcc-cccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 345789999883 22111100 01112211 2344578899999999999999875
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.5e-16 Score=146.89 Aligned_cols=299 Identities=12% Similarity=0.101 Sum_probs=200.6
Q ss_pred CcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecCCCeE
Q 003356 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHM 145 (827)
Q Consensus 68 G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~~l 145 (827)
..+.+++|.|.|..-||++...++++-....-.. .-..|+...++ +.+ ..+. -+.+.++|.|. +++++.|
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~--~r~~hea~~~p-p~v--~~kr---~khhkgsiyc~~ws~~geli 104 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALID--LRHAHEAAKQP-PSV--LCKR---NKHHKGSIYCTAWSPCGELI 104 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccC--cccccccccCC-CeE--Eeee---ccccCccEEEEEecCccCeE
Confidence 3457899999999999999999998865431110 01122211111 111 1111 24566677665 6777889
Q ss_pred EEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEE
Q 003356 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (827)
Q Consensus 146 lv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (827)
+.|+.|.+|+.+.++.++.....- -..+.-+++.|.+|+|-....
T Consensus 105 atgsndk~ik~l~fn~dt~~~~g~-------------------------------dle~nmhdgtirdl~fld~~~---- 149 (350)
T KOG0641|consen 105 ATGSNDKTIKVLPFNADTCNATGH-------------------------------DLEFNMHDGTIRDLAFLDDPE---- 149 (350)
T ss_pred EecCCCceEEEEecccccccccCc-------------------------------ceeeeecCCceeeeEEecCCC----
Confidence 999999999999888765432200 022344567788877544321
Q ss_pred EEeCCcEEEEeeccCccc--cceeeccce---ecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecC
Q 003356 226 LYSNGQLMSCSVSKKGLK--LAEFIKIDK---ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~--~~~~~~~~~---~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~ 300 (827)
+.|.+++++ ..+..+ +-|..+++. +.||.+-+-.-++=++-.+|+|+.|.+||.||+.- ..++.++...-.
T Consensus 150 --s~~~il~s~-gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~ 225 (350)
T KOG0641|consen 150 --SGGAILASA-GAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFH 225 (350)
T ss_pred --cCceEEEec-CCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeec-cceeeeccCccc
Confidence 123333332 222233 333333332 36788777655555789999999999999999987 666665543110
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEE
Q 003356 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ 377 (827)
Q Consensus 301 ~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~ 377 (827)
+ .--...+|.+++..|.|++||+|-+|....+||+.|++.+..+..| ...|.++.|+|.. ..+++++ .+++
T Consensus 226 ~-~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph-sadir~vrfsp~a----~yllt~syd~~ikl 299 (350)
T KOG0641|consen 226 D-GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH-SADIRCVRFSPGA----HYLLTCSYDMKIKL 299 (350)
T ss_pred C-CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC-ccceeEEEeCCCc----eEEEEecccceEEE
Confidence 0 0002457999999999999999999999999999999999999888 7789999999998 8888887 6777
Q ss_pred EccCCc---e-EEEEecCCcceEEEEec---ceeeeecccCCCeeeeEE
Q 003356 378 WDEYGY---R-LYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 378 W~~~~~---~-l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~ 419 (827)
-+..+. + ..++..+|++.+....+ .-++++.+.|.+..+|.+
T Consensus 300 tdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 300 TDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred eecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 776542 2 24455678888877666 346778889999998864
No 99
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.9e-17 Score=162.06 Aligned_cols=256 Identities=13% Similarity=0.172 Sum_probs=198.9
Q ss_pred eCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEc------CCCC--------
Q 003356 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDL------AESA-------- 289 (827)
Q Consensus 228 ~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~------~~~~-------- 289 (827)
....++.+++.|.+..+|....+.++ .||.+.+. ++|++.+.++++++.|++-.||.. ..+.
T Consensus 158 ~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE 237 (481)
T KOG0300|consen 158 STQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE 237 (481)
T ss_pred cCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence 33446667778889999999998876 79999998 999999999999999999999972 2100
Q ss_pred -------cceEEEEee------cC--C--CCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccc
Q 003356 290 -------SLIRTVSLY------DW--G--YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 352 (827)
Q Consensus 290 -------~~~~~l~~~------~~--~--~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~ 352 (827)
+..+...+. .+ + -..+|.+.|.++.|-..|+.+++++.|.+-.+||++++.++..|.+| ...
T Consensus 238 eE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGH-d~E 316 (481)
T KOG0300|consen 238 EEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGH-DSE 316 (481)
T ss_pred hhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCc-chh
Confidence 000000000 00 0 11259999999999999999999999999999999999999999998 566
Q ss_pred eeeeeecCCCCCCccceeecc---eeEEEccCC-ceEEEEecCCcceEEEEec--ceeeeecccCCCeeeeEEEEcCCeE
Q 003356 353 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRL 426 (827)
Q Consensus 353 v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~-~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~ 426 (827)
.+.+.-+|.. ..+++.+ +-++||... -+-+.++++|.+.|....| ...+++|+.|.++++|++.+...
T Consensus 317 LtHcstHptQ----rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs-- 390 (481)
T KOG0300|consen 317 LTHCSTHPTQ----RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS-- 390 (481)
T ss_pred ccccccCCcc----eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC--
Confidence 7777778887 7777766 788999863 3456788999999966666 88899999999999999988777
Q ss_pred EEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCC-ccceEEEEEEEEEE
Q 003356 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLW 504 (827)
Q Consensus 427 ~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~-~~~e~~~~v~gl~W 504 (827)
|...+....++..+++|..++.||.--++..+ +||++..+.-.+.. ..|-+.-.|...+|
T Consensus 391 ------------------plATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW 452 (481)
T KOG0300|consen 391 ------------------PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAW 452 (481)
T ss_pred ------------------cceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeec
Confidence 66666677899999999999999999999999 99999887544331 12223334667789
Q ss_pred eCCE
Q 003356 505 LGKI 508 (827)
Q Consensus 505 ~~~~ 508 (827)
..+.
T Consensus 453 ~eeh 456 (481)
T KOG0300|consen 453 LEEH 456 (481)
T ss_pred cccC
Confidence 7553
No 100
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.76 E-value=5.5e-18 Score=176.59 Aligned_cols=275 Identities=15% Similarity=0.140 Sum_probs=202.3
Q ss_pred ccccccceEEEeecC---CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccc
Q 003356 127 PFAEKGLSVSNIVSD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDH 203 (827)
Q Consensus 127 ~~~~~~~~v~~~~~d---~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~ 203 (827)
.+.++...|+++... +..++.++-|+.|++|..-.+.. +++ .
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~-------------~lr----------------------t 253 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR-------------CLR----------------------T 253 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc-------------eeh----------------------h
Confidence 346677777776433 45678888899998865332111 111 2
Q ss_pred cCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee-cCCCC--cEEEEEcCCC-CEEEEEecCCe
Q 003356 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGD--AVCASIAPEQ-QILAVGTRRGV 279 (827)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-~~h~~--~v~va~sp~~-~lla~g~~dg~ 279 (827)
+.++..+|.++. ++.+|+-+++++-|..+++||..++++. ..|.+ ..|+.|+||+ +.+.+|+.|+.
T Consensus 254 f~gH~k~Vrd~~----------~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~k 323 (503)
T KOG0282|consen 254 FKGHRKPVRDAS----------FNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKK 323 (503)
T ss_pred hhcchhhhhhhh----------ccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCc
Confidence 334555565544 8889999999999999999999999876 33443 4569999998 89999999999
Q ss_pred EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeec
Q 003356 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (827)
Q Consensus 280 v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~s 359 (827)
|+.||++. ++.++.... |-++|..+.|-++|+.++++++|++++||+......+.-+......+..++..+
T Consensus 324 i~~wDiRs-~kvvqeYd~--------hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~ 394 (503)
T KOG0282|consen 324 IRQWDIRS-GKVVQEYDR--------HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH 394 (503)
T ss_pred EEEEeccc-hHHHHHHHh--------hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecC
Confidence 99999998 787777766 999999999999999999999999999999988776665544434566778888
Q ss_pred CCCCCCccceeecc---eeEEEccCC-ce--EEEEecCCcce---E-EEEec-ceeeeecccCCCeeeeEEEEcCCeEEE
Q 003356 360 PNQDCKYEPLMSGT---SMMQWDEYG-YR--LYAIEEGSSER---V-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLV 428 (827)
Q Consensus 360 p~~~~~~~~l~sg~---~i~~W~~~~-~~--l~~~~~~~~~~---v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~ 428 (827)
|++ ..++.-+ .+.++.... ++ .-...++|... + +.|++ ++.+++|+.||.+.+|+....
T Consensus 395 P~~----~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~------ 464 (503)
T KOG0282|consen 395 PNG----KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT------ 464 (503)
T ss_pred CCC----CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh------
Confidence 887 3333222 333333211 11 01122344321 2 66777 999999999999999995443
Q ss_pred EecCCCCcceEEEeeeceeeccCCCcEEEEEEcCC-CCEEEEEeCCceE-EEE
Q 003356 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYD 479 (827)
Q Consensus 429 ~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Spd-G~~lavag~dg~i-iwd 479 (827)
++..++.+|+.++..+.|.|- -..+|++|.||.| +|+
T Consensus 465 --------------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 --------------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred --------------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 346788899999999999997 4589999999999 995
No 101
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.76 E-value=8.2e-17 Score=168.58 Aligned_cols=295 Identities=15% Similarity=0.170 Sum_probs=189.2
Q ss_pred ccccccccceEEEeecC--CCeEEEEecCCcEEEEecCCccCcceee-cccCCCCcccceecccCCCCccccccCCceec
Q 003356 125 QLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFEL-VHSSNDSSVAALSHHFPSNGLASVDTSGAFVS 201 (827)
Q Consensus 125 ~~~~~~~~~~v~~~~~d--~~~llv~t~dg~i~~~~w~~~~~~~~~l-~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~ 201 (827)
.+.+.++...|++++.| |.+++.|+-|-+++.|++.+....-... .+.|+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~--------------------------- 212 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC--------------------------- 212 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcc---------------------------
Confidence 34456666667766554 5789999999999998877653221100 01122
Q ss_pred cccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccc-------eecCCCCcEE-EEEcCCC-CEEE
Q 003356 202 DHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-------KELGSGDAVC-ASIAPEQ-QILA 272 (827)
Q Consensus 202 ~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~-------~~~~h~~~v~-va~sp~~-~lla 272 (827)
+...|.++.|++..+.+++++-..+..+...+..+ +.....+. ..+||...+. ..|+|+. ..+.
T Consensus 213 -----E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~--~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~Fl 285 (641)
T KOG0772|consen 213 -----ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE--IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFL 285 (641)
T ss_pred -----cccccceeeecCCCCeEEEEecCcceeEEccCCce--eeeeeccchhhhhhhccCCceeeeeccccccCcccceE
Confidence 23456777788777777777766655553332221 11112221 2268887665 9999975 5788
Q ss_pred EEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe--eEEEeccccc
Q 003356 273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISL 350 (827)
Q Consensus 273 ~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~--l~~tl~~~~~ 350 (827)
+++.||++|+|++....+....++...- -+..-++++|+|+|||+.+|+|..||.|.+|+..+.. .....+..|.
T Consensus 286 T~s~DgtlRiWdv~~~k~q~qVik~k~~---~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~ 362 (641)
T KOG0772|consen 286 TCSYDGTLRIWDVNNTKSQLQVIKTKPA---GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL 362 (641)
T ss_pred EecCCCcEEEEecCCchhheeEEeeccC---CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccC
Confidence 9999999999999874455555554211 1234478999999999999999999999999973321 2222333224
Q ss_pred c--ceeeeeecCCCCCCccceeecc---eeEEEccCCce-EEEEecCC----cceEEEEec-ceeeeeccc------CCC
Q 003356 351 S--SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR-LYAIEEGS----SERVLIFSF-GKCCLNRGV------SGM 413 (827)
Q Consensus 351 ~--~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~-l~~~~~~~----~~~v~~~~~-~~~~~s~~~------d~~ 413 (827)
. .++++.||+++ ..|++-+ +.++|+++... .+.+..+- ...=.+|++ .+.+++|.. .++
T Consensus 363 ~g~~Itsi~FS~dg----~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 363 PGQDITSISFSYDG----NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGT 438 (641)
T ss_pred CCCceeEEEecccc----chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCce
Confidence 4 79999999999 8888766 89999998653 44443332 222367777 666666543 222
Q ss_pred eeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE--EEEc
Q 003356 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDI 480 (827)
Q Consensus 414 ~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i--iwd~ 480 (827)
+.+++-.+ ++...+.--.+..|..+.|+|.-+.|.+|+.||++ +||.
T Consensus 439 L~f~d~~t--------------------~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 439 LFFFDRMT--------------------LDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred EEEEeccc--------------------eeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 33322111 11122222235568899999999999999999999 5554
No 102
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.76 E-value=5.1e-15 Score=154.89 Aligned_cols=416 Identities=14% Similarity=0.115 Sum_probs=237.9
Q ss_pred ceEEEEEec--ceEEEEEcc---CeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEE
Q 003356 22 QQIIYFKVN--NGLLLIASP---CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (827)
Q Consensus 22 ~~vv~fspd--g~lla~~~~---~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v 96 (827)
.-+|+||+- |++++...+ .-+.|||- +...+++..+.+.+ .+..+.|.|-+.-+.+.-.+|.+.+|+.
T Consensus 157 V~~vaFsk~~~G~~l~~vD~s~~h~lSVWdW-qk~~~~~~vk~sne------~v~~a~FHPtd~nliit~Gk~H~~Fw~~ 229 (626)
T KOG2106|consen 157 VTCVAFSKINGGSLLCAVDDSNPHMLSVWDW-QKKAKLGPVKTSNE------VVFLATFHPTDPNLIITCGKGHLYFWTL 229 (626)
T ss_pred ceeeeecccCCCceEEEecCCCccccchhhc-hhhhccCcceeccc------eEEEEEeccCCCcEEEEeCCceEEEEEc
Confidence 356889887 678888754 45899998 56666665544433 3467899999999999999999999988
Q ss_pred EecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCC-CeEEEEecCCcEEEEecCCccCcceeecccCCC
Q 003356 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (827)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~-~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~ 175 (827)
+.+.-..... + ++ +.+..-|.|+.... ..++.|-++|.|.+|+-.+....... ...+.+
T Consensus 230 ~~~~l~k~~~-------------~-fe-----k~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~-~aH~gg 289 (626)
T KOG2106|consen 230 RGGSLVKRQG-------------I-FE-----KREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQV-HAHDGG 289 (626)
T ss_pred cCCceEEEee-------------c-cc-----cccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEe-eecCCc
Confidence 7554211100 0 00 11123566665544 46788888999988654333221111 112222
Q ss_pred CcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce--e
Q 003356 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--E 253 (827)
Q Consensus 176 ~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~--~ 253 (827)
..++.+ -.++.+.+ .+.+.-+..| ...-..+..++........-.+.+.+.=++++.....+-.-+..+.-. .
T Consensus 290 v~~L~~---lr~GtllS-GgKDRki~~W-d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v 364 (626)
T KOG2106|consen 290 VFSLCM---LRDGTLLS-GGKDRKIILW-DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV 364 (626)
T ss_pred eEEEEE---ecCccEee-cCccceEEec-cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE
Confidence 222221 11121222 2211111111 111122333333333333333333333244444443332222222211 2
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEE
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
.+|.+... ++.+|+..++++++.|+.+++|+ + .++.-+... ..++.|+.|.|.| .+|.|...|.+.
T Consensus 365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~-~k~~wt~~~---------~d~~~~~~fhpsg-~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--D-HKLEWTKII---------EDPAECADFHPSG-VVAVGTATGRWF 431 (626)
T ss_pred EecccceeeEEcCCChhheeeccCcceEEEcc--C-CceeEEEEe---------cCceeEeeccCcc-eEEEeeccceEE
Confidence 67888887 89999999999999999999998 2 344433332 4578899999999 999999999999
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCC
Q 003356 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSG 412 (827)
Q Consensus 333 vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~ 412 (827)
|.|.++..++..-.+ ...++.++|+|+| . .++.|+.|+
T Consensus 432 V~d~e~~~lv~~~~d--~~~ls~v~ysp~G----~------------------------------------~lAvgs~d~ 469 (626)
T KOG2106|consen 432 VLDTETQDLVTIHTD--NEQLSVVRYSPDG----A------------------------------------FLAVGSHDN 469 (626)
T ss_pred EEecccceeEEEEec--CCceEEEEEcCCC----C------------------------------------EEEEecCCC
Confidence 999888554443322 4556667777766 3 344556666
Q ss_pred CeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCc
Q 003356 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDI 491 (827)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~ 491 (827)
.+.++.+..+..+.- ..-.-+..||+.+.||+|++++.+-+-|-.+ .|.... .+.
T Consensus 470 ~iyiy~Vs~~g~~y~------------------r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~--~~~---- 525 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYS------------------RVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE--CKQ---- 525 (626)
T ss_pred eEEEEEECCCCcEEE------------------EeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc--Ccc----
Confidence 666655544444211 1111233799999999999999999999888 783221 111
Q ss_pred cceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEecCCccEEEEccCCEEEEEEcCceEEEEEEE
Q 003356 492 TQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (827)
Q Consensus 492 ~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~~~~~~l~~~~~~llV~~~~~~i~l~~~~ 571 (827)
. -.++++.|.-..-.++ +++-. .. +++. -+.+.-+..++.+..+.+.+.++||.+-
T Consensus 526 ---~-ts~kDvkW~t~~c~lG--------F~v~g-~s---~~t~--------i~a~~rs~~~~~lA~gdd~g~v~lf~yP 581 (626)
T KOG2106|consen 526 ---I-TSVKDVKWATYTCTLG--------FEVFG-GS---DGTD--------INAVARSHCEKLLASGDDFGKVHLFSYP 581 (626)
T ss_pred ---c-ceecceeeeeeEEEEE--------EEEec-cc---CCch--------HHHhhhhhhhhhhhccccCceEEEEccc
Confidence 1 1277888976655544 22111 00 0100 0122333455666666777999999986
Q ss_pred E
Q 003356 572 L 572 (827)
Q Consensus 572 ~ 572 (827)
.
T Consensus 582 c 582 (626)
T KOG2106|consen 582 C 582 (626)
T ss_pred c
Confidence 4
No 103
>PTZ00420 coronin; Provisional
Probab=99.75 E-value=2e-16 Score=179.03 Aligned_cols=216 Identities=12% Similarity=0.112 Sum_probs=154.8
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeC-CcEEEEeeccCccccceeeccc-----------eecCCCCcEE-EEEcCCCCE-
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKID-----------KELGSGDAVC-ASIAPEQQI- 270 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~d-G~~~~~~~~~~~~~~~~~~~~~-----------~~~~h~~~v~-va~sp~~~l- 270 (827)
..+...|.+++ ++|+ +.++++++.|+++++|+..... .+.+|...+. ++|+|++..
T Consensus 71 ~gH~~~V~~la----------fsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~i 140 (568)
T PTZ00420 71 KGHTSSILDLQ----------FNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYI 140 (568)
T ss_pred cCCCCCEEEEE----------EcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeE
Confidence 34566677776 4554 6788888888899999876421 2367888887 999999875
Q ss_pred EEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccc
Q 003356 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 350 (827)
Q Consensus 271 la~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~ 350 (827)
+|+|+.||+|++||+.+ ++....+. |...|.+++|+|||.+|++++.|+.|+|||+.++..+.++.+|.
T Consensus 141 LaSgS~DgtIrIWDl~t-g~~~~~i~---------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~- 209 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIEN-EKRAFQIN---------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD- 209 (568)
T ss_pred EEEEeCCCeEEEEECCC-CcEEEEEe---------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc-
Confidence 57999999999999987 55554443 55789999999999999999999999999999999888888873
Q ss_pred ccee-----eeeecCCCCCCccceeecc-------eeEEEccCC-ceEEEEec--CCcceEE-EEec--ceeeeecccCC
Q 003356 351 SSIS-----SPIVKPNQDCKYEPLMSGT-------SMMQWDEYG-YRLYAIEE--GSSERVL-IFSF--GKCCLNRGVSG 412 (827)
Q Consensus 351 ~~v~-----s~~~sp~~~~~~~~l~sg~-------~i~~W~~~~-~~l~~~~~--~~~~~v~-~~~~--~~~~~s~~~d~ 412 (827)
..+. ...|++++ ..+++++ ++.+|+... .+.+.... .+...+. .++. +..+++|+.|+
T Consensus 210 g~~~s~~v~~~~fs~d~----~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDD----NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred CCceeEEEEeeeEcCCC----CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 3322 23345665 5666543 489999884 44444332 2233332 2222 77889999999
Q ss_pred CeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCC
Q 003356 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (827)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG 464 (827)
++++|++..+.-. ....|. +..|++.++|.|+.
T Consensus 286 tIr~~e~~~~~~~------------------~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 286 NCRYYQHSLGSIR------------------KVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred eEEEEEccCCcEE------------------eecccc-cCCCccceEEcccc
Confidence 9999998644211 122333 56789999999963
No 104
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.75 E-value=3.4e-17 Score=170.57 Aligned_cols=219 Identities=19% Similarity=0.235 Sum_probs=167.7
Q ss_pred EEEeCCcEEEEeeccCccccceeecccee----cCCCCcEE--EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEee
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC--ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~--va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~ 298 (827)
-+++||+.++++..-.++.+||+..+... ......-| +++|||.++..+++.||.|+|||+.+ ...++.+++
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn-q~~VrqfqG- 549 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQG- 549 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc-ceeeecccC-
Confidence 38899999999999888999998765432 11223345 89999999999999999999999998 888999999
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc-eeEE
Q 003356 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQ 377 (827)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~i~~ 377 (827)
|+..+.||..++||+.|-+|+-|++||.||+..++....... .+.|-++...|.+ +-++-|- ..-+
T Consensus 550 -------htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF--~SQIfSLg~cP~~----dWlavGMens~v 616 (705)
T KOG0639|consen 550 -------HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF--SSQIFSLGYCPTG----DWLAVGMENSNV 616 (705)
T ss_pred -------CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh--hhhheecccCCCc----cceeeecccCcE
Confidence 999999999999999999999999999999987764432211 3457777788887 5555443 3333
Q ss_pred Ecc--CCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCC
Q 003356 378 WDE--YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (827)
Q Consensus 378 W~~--~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~ 452 (827)
|-. .+.+-. .+.-|...|+.+.| |+.+++.+.|.....|..-.+.. ... ...+
T Consensus 617 evlh~skp~ky-qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas--------------------iFq-skE~ 674 (705)
T KOG0639|consen 617 EVLHTSKPEKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--------------------IFQ-SKES 674 (705)
T ss_pred EEEecCCccce-eecccccEEEEEEecccCceeeecCchhhhhhccCccccc--------------------eee-cccc
Confidence 322 111111 12346667877777 99999999999998998766655 111 1234
Q ss_pred CcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 453 ~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
.+|.++.+|.|.+||++|+.|..+ +|.+
T Consensus 675 SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 675 SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 689999999999999999999888 8875
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.3e-16 Score=157.28 Aligned_cols=240 Identities=19% Similarity=0.282 Sum_probs=163.2
Q ss_pred CCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCCcceE-EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEE
Q 003356 257 GDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (827)
Q Consensus 257 ~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~~~~~-~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~v 333 (827)
++.+. ++||| ...+++.|+.||+||+|++...+.... ... .|.++|.+++|+.||..+++|+.|+.+++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~--------~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ--------SHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh--------ccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 56666 99999 567888999999999999987434333 222 29999999999999999999999999999
Q ss_pred EeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEecce-eeeecc
Q 003356 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGK-CCLNRG 409 (827)
Q Consensus 334 Ws~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~-~~~s~~ 409 (827)
||+.+++ ..++..| ..+|..++|-+.. ..+.+++|+ ++++||.+....+.+.+- .+++++.+.-. .++.+.
T Consensus 99 wDL~S~Q-~~~v~~H-d~pvkt~~wv~~~--~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~pm~vVat 173 (347)
T KOG0647|consen 99 WDLASGQ-VSQVAAH-DAPVKTCHWVPGM--NYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLYPMAVVAT 173 (347)
T ss_pred EEccCCC-eeeeeec-ccceeEEEEecCC--CcceeEecccccceeecccCCCCeeeeeec-cceeeehhccCceeEEEe
Confidence 9999995 4555556 6789999886654 246889998 999999998887776643 55777777733 344444
Q ss_pred cCCCeeeeEEEEcCC--------------eEEEEecCCCCcc-------eEEEeeec-----eeeccC---------CCc
Q 003356 410 VSGMTYARQVIYGED--------------RLLVVQSEDTDEL-------KILHLNLP-----VSYISQ---------NWP 454 (827)
Q Consensus 410 ~d~~~~~w~~~~~~~--------------~~~~~~~~d~~~~-------~w~~~~~p-----~~~~~~---------~~~ 454 (827)
.+..+.++.+..+.. .+.++...+...+ .-+.+.-| .++..| -.+
T Consensus 174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 556666665533211 1111111111100 00111111 122222 235
Q ss_pred EEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEE
Q 003356 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIV 510 (827)
Q Consensus 455 I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li 510 (827)
|.+++|.|.-..++++|.||+. .||-..+ -|++..+.+.+.+.+.++.-.+.+++
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhh-hhhhccCcCCCccceeEecCCCCEEE
Confidence 8899999999999999999999 9998664 36666666656555555555555544
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.74 E-value=2.5e-16 Score=163.46 Aligned_cols=265 Identities=15% Similarity=0.196 Sum_probs=191.1
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeecccee---------------------cCCCCc-EEEEEcCCCCEEEEEecCCe
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---------------------LGSGDA-VCASIAPEQQILAVGTRRGV 279 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---------------------~~h~~~-v~va~sp~~~lla~g~~dg~ 279 (827)
..+++++|++..+.++.++++.-|+..++... .+|.+- +++++|+||++||+|+.|..
T Consensus 146 ~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~ 225 (479)
T KOG0299|consen 146 TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRH 225 (479)
T ss_pred eEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCce
Confidence 34557888888888888877777765543311 155554 45999999999999999999
Q ss_pred EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeec
Q 003356 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (827)
Q Consensus 280 v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~s 359 (827)
|.||+.++ .++++++.+ |.++|.+++|--.-..|.+++.|+++++|++.....+.++.+| .+.|.++...
T Consensus 226 v~Iw~~~t-~ehv~~~~g--------hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH-qd~v~~IdaL 295 (479)
T KOG0299|consen 226 VQIWDCDT-LEHVKVFKG--------HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH-QDGVLGIDAL 295 (479)
T ss_pred EEEecCcc-cchhhcccc--------cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC-ccceeeechh
Confidence 99999999 899999888 9999999999988889999999999999999888888888888 5667766543
Q ss_pred CCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec--ceeeeecccCCCeeeeEEEEcCCeEEEEecCCC
Q 003356 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (827)
Q Consensus 360 p~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~ 434 (827)
.-. ..+..|. +.++|.+.. +.-.+..++.+.+-+..| ...+++|+.+|.+.+|.+.+... ++++.-...
T Consensus 296 ~re----R~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp-lf~~~~AHg 369 (479)
T KOG0299|consen 296 SRE----RCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP-LFTSRLAHG 369 (479)
T ss_pred ccc----ceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCc-eeEeecccc
Confidence 332 3333332 899999832 222334456666766666 77899999999999999876543 333321100
Q ss_pred CcceEEEeeece-eeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe--EEeeCCccceEEEE--EEEEEEe--C
Q 003356 435 DELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQ--SKGLLWL--G 506 (827)
Q Consensus 435 ~~~~w~~~~~p~-~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~--w~~f~~~~~e~~~~--v~gl~W~--~ 506 (827)
. .|. .-.+++.+|++++..|....+|+|+.+|.+ +|-+.+|- ...+ .+-.+. |..++|. +
T Consensus 370 ------v--~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l----~~ls~~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 370 ------V--IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLL----YSLSLVGFVNSLAFSNSG 437 (479)
T ss_pred ------c--cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccccee----eecccccEEEEEEEccCC
Confidence 0 011 123444689999999999999999999999 99999882 2222 122222 5578875 5
Q ss_pred CEEEEEEE
Q 003356 507 KIIVVCNY 514 (827)
Q Consensus 507 ~~li~~~~ 514 (827)
+.+++++.
T Consensus 438 k~ivagiG 445 (479)
T KOG0299|consen 438 KRIVAGIG 445 (479)
T ss_pred CEEEEecc
Confidence 56777633
No 107
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.1e-16 Score=173.98 Aligned_cols=264 Identities=16% Similarity=0.227 Sum_probs=198.8
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l 341 (827)
+.|+ ....+|+|. ...|.+|+..+ +........ +.+.|+++.|+++|++||+|..+|.|.|||....+.
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s-~~v~~l~~~--------~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~ 251 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASS-GSVTELCSF--------GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK 251 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCC-CceEEeEec--------CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc
Confidence 6777 556788876 44799999887 654544444 578899999999999999999999999999999999
Q ss_pred EEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEE-ecCCcceEEEEec---ceeeeecccCCCe
Q 003356 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERVLIFSF---GKCCLNRGVSGMT 414 (827)
Q Consensus 342 ~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~-~~~~~~~v~~~~~---~~~~~s~~~d~~~ 414 (827)
..++.+++...|.+++|.. ..+.+|+ .+..++....+.... ..+|.+.|..+.+ ++.+++|+-|+.+
T Consensus 252 ~~~~~~~h~~rvg~laW~~------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~ 325 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWNS------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVV 325 (484)
T ss_pred cccccCCcCceeEEEeccC------ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccce
Confidence 9999985588899999973 4566666 788888876665544 7789999966555 8899999999999
Q ss_pred eeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCC-CCEEEEEe--CCceE-EEEcCCCeEEeeCC
Q 003356 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAG--LHGLI-LYDIRQKKWRVFGD 490 (827)
Q Consensus 415 ~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Spd-G~~lavag--~dg~i-iwd~~t~~w~~f~~ 490 (827)
.+|+...... +..+..|...|..++|+|= ...||+|| .|+.+ +||+.+|+-. ..
T Consensus 326 ~Iwd~~~~~p--------------------~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i--~~ 383 (484)
T KOG0305|consen 326 FIWDGLSPEP--------------------KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI--DS 383 (484)
T ss_pred EeccCCCccc--------------------cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe--cc
Confidence 9999743333 5688899999999999995 67888875 58999 9999988622 11
Q ss_pred ccceEEEEEEEEEEeCCE--EEEEEEeeCCCcEEEEEeeCCCCCccceEEEEecCCcc--EEEEccCCEEEEEEcCceEE
Q 003356 491 ITQEQKIQSKGLLWLGKI--IVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKP--IVMDVYEDYILVTYRPFDVH 566 (827)
Q Consensus 491 ~~~e~~~~v~gl~W~~~~--li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~~~~--~~l~~~~~~llV~~~~~~i~ 566 (827)
. .-.-+|..+.|..++ +++++.. ...+|++|.-+.+.....+. -+...+ +.++++++.++++.+|..++
T Consensus 384 v--dtgsQVcsL~Wsk~~kEi~sthG~---s~n~i~lw~~ps~~~~~~l~--gH~~RVl~la~SPdg~~i~t~a~DETlr 456 (484)
T KOG0305|consen 384 V--DTGSQVCSLIWSKKYKELLSTHGY---SENQITLWKYPSMKLVAELL--GHTSRVLYLALSPDGETIVTGAADETLR 456 (484)
T ss_pred c--ccCCceeeEEEcCCCCEEEEecCC---CCCcEEEEeccccceeeeec--CCcceeEEEEECCCCCEEEEecccCcEE
Confidence 1 111247889999776 6665322 33488998876332222222 222333 44567889999999999999
Q ss_pred EEEEE
Q 003356 567 IFHVK 571 (827)
Q Consensus 567 l~~~~ 571 (827)
+|.+=
T Consensus 457 fw~~f 461 (484)
T KOG0305|consen 457 FWNLF 461 (484)
T ss_pred ecccc
Confidence 99863
No 108
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=1.2e-16 Score=158.60 Aligned_cols=217 Identities=16% Similarity=0.181 Sum_probs=165.6
Q ss_pred EeCCcEEEEeeccCccccceeecccee-----cCC----CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceE---E
Q 003356 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGS----GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR---T 294 (827)
Q Consensus 227 s~dG~~~~~~~~~~~~~~~~~~~~~~~-----~~h----~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~---~ 294 (827)
-|+-.++++++.+.-|++||..+++.. ..| ..+.+++|||||..|..|. ..+|++||+...++... +
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh
Confidence 466667777777778888888877543 122 3467799999999998765 66999999965343222 1
Q ss_pred EEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 003356 295 VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
+...+ .+..|-+.|++|+| |.+++|.|+.-..+-|+.-.++..+..+.+| ...|+.+.|.++| +.+.+|.
T Consensus 199 ~~~~k----~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edG----n~lfsGa 269 (406)
T KOG2919|consen 199 VTKGK----FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDG----NKLFSGA 269 (406)
T ss_pred hhccc----ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCc----Ceecccc
Confidence 11111 12478899999999 6679999999889999998888889899888 6789999999999 8888887
Q ss_pred ----eeEEEccCCce-EEEEecCC----cceE-EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEe
Q 003356 374 ----SMMQWDEYGYR-LYAIEEGS----SERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (827)
Q Consensus 374 ----~i~~W~~~~~~-l~~~~~~~----~~~v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~ 442 (827)
.+..||++... .+..+..| .++| +.+.+ ++.+++|+.||.+++|++..-.+.
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~----------------- 332 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE----------------- 332 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc-----------------
Confidence 89999997654 33333333 3455 66777 899999999999999998774442
Q ss_pred eeceeeccCCCcEEEEEEcCCCCEEEEEeC
Q 003356 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (827)
Q Consensus 443 ~~p~~~~~~~~~I~~va~SpdG~~lavag~ 472 (827)
+..+..+...+..++++|--..+|+++.
T Consensus 333 --~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 333 --VSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred --ccccccccccccceecCcccceeeeccC
Confidence 5667778888999999999888888774
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.74 E-value=1.5e-16 Score=172.28 Aligned_cols=213 Identities=16% Similarity=0.268 Sum_probs=171.5
Q ss_pred eCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCC
Q 003356 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (827)
Q Consensus 228 ~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~ 303 (827)
+|+-.++++..|.++.+|.......+ .+|..-|| ++...++. +.+|+.|.++++|... ++...+.+
T Consensus 69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~~l~g------ 138 (745)
T KOG0301|consen 69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVYSLQG------ 138 (745)
T ss_pred ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch---hhhcccCC------
Confidence 45555666777877777776655543 89999999 88887877 8999999999999874 45556777
Q ss_pred CCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEcc
Q 003356 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (827)
Q Consensus 304 ~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~ 380 (827)
|+.+|++++.-|++ .+++|+.|.+|++|.- ++++.++.+| ++-|..+++-++. .++|.+ .++.|+.
T Consensus 139 --H~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gH-tD~VRgL~vl~~~-----~flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 139 --HTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGH-TDCVRGLAVLDDS-----HFLSCSNDGSIRLWDL 207 (745)
T ss_pred --cchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccc-hhheeeeEEecCC-----CeEeecCCceEEEEec
Confidence 99999999999998 8889999999999965 7889999998 8889999998874 344444 8999999
Q ss_pred CCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEE
Q 003356 381 YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (827)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~ 457 (827)
+++.+....+|+.-++.++. ...+++++.|+++++|... + .-+.+++|.+ .|++
T Consensus 208 -~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e--------------~~q~I~lPtt------siWs 264 (745)
T KOG0301|consen 208 -DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--E--------------CVQVITLPTT------SIWS 264 (745)
T ss_pred -cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--c--------------eEEEEecCcc------ceEE
Confidence 56777777899999988884 7788999999999999843 1 1245556653 5888
Q ss_pred EEEcCCCCEEEEEeCCceE-EEEcCCCeE
Q 003356 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (827)
Q Consensus 458 va~SpdG~~lavag~dg~i-iwd~~t~~w 485 (827)
+.+=++|. |++||.||.+ +|...-.||
T Consensus 265 a~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 265 AKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 88888887 6689999999 999887665
No 110
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.1e-15 Score=149.22 Aligned_cols=272 Identities=14% Similarity=0.163 Sum_probs=191.9
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEec--CcEEEEEEEEe
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS--SLYLHIFKVQI 98 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~--dg~l~l~~v~~ 98 (827)
-..+.|+++|.++++. .+++++|||.. .+.++.... + .+||.. .++|-.....+.-+++ |.+||.-++..
T Consensus 17 i~sl~fs~~G~~litss~dDsl~LYd~~-~g~~~~ti~----s-kkyG~~-~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSSEDDSLRLYDSL-SGKQVKTIN----S-KKYGVD-LACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred eeEEEecCCCCEEEEecCCCeEEEEEcC-CCceeeEee----c-cccccc-EEEEecCCceEEEccCCCCCceEEEEeec
Confidence 4558899999998887 46699999995 655544432 2 246754 5666555555555554 67888888865
Q ss_pred cCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCC
Q 003356 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (827)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~ 176 (827)
.+--.+ +.|+...|..+ ++-++.++.++-|.+++.|+..... .+-.
T Consensus 90 NkylRY-----------------------F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~-------- 137 (311)
T KOG1446|consen 90 NKYLRY-----------------------FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGL-------- 137 (311)
T ss_pred CceEEE-----------------------cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-CceE--------
Confidence 432222 34555555444 5566889999999999985443111 1100
Q ss_pred cccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce----
Q 003356 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---- 252 (827)
Q Consensus 177 ~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~---- 252 (827)
.......++++.|+|-++|++.....|+++|.....+
T Consensus 138 ---------------------------------------l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~ 178 (311)
T KOG1446|consen 138 ---------------------------------------LNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFT 178 (311)
T ss_pred ---------------------------------------EecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCce
Confidence 0011133467888888888888777888888764321
Q ss_pred -e----cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCe---EEEEECCCCCEEEE
Q 003356 253 -E----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV---SCIAWTPDNSAFAV 324 (827)
Q Consensus 253 -~----~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V---~~l~~spDg~~Las 324 (827)
. ..+..+..+.|||||+.|..+..++.+.+-|.-+ +..+.++.+ +..+- -+.+|+|||+++.+
T Consensus 179 tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~--------~~~~~~~~~~a~ftPds~Fvl~ 249 (311)
T KOG1446|consen 179 TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD-GTVKSTFSG--------YPNAGNLPLSATFTPDSKFVLS 249 (311)
T ss_pred eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-CcEeeeEee--------ccCCCCcceeEEECCCCcEEEE
Confidence 1 1234455599999999999999999999999988 777778877 33221 57889999999999
Q ss_pred EEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc-eeEEEccCCce
Q 003356 325 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYR 384 (827)
Q Consensus 325 g~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~ 384 (827)
|+.||+|.+|++.++..+..+++.....+.++.|+|-- ..+++++ .+.+|-+...+
T Consensus 250 gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~----~mf~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 250 GSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY----AMFVSASSNLVFWLPDEDA 306 (311)
T ss_pred ecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce----eeeeecCceEEEEeccccc
Confidence 99999999999999999999988546778899999876 6666665 78889876443
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=4.7e-17 Score=174.94 Aligned_cols=274 Identities=16% Similarity=0.179 Sum_probs=201.0
Q ss_pred CCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCc
Q 003356 141 DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM 220 (827)
Q Consensus 141 d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 220 (827)
.+.+++.|+.||.|+.|+.+-...... ..++.+|+.+.+.
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s----------------------------------------~~~~asme~HsDW 75 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPS----------------------------------------TPYIASMEHHSDW 75 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcc----------------------------------------cchhhhhhhhHhH
Confidence 345799999999998865442222110 1123344444444
Q ss_pred ceEEEEEeCCcEEEEeeccCccccceeeccc-----eecCCCCcEE-EEE-cCCCCEEEEEecCCeEEEEEcCCCCc-ce
Q 003356 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAVC-ASI-APEQQILAVGTRRGVVELYDLAESAS-LI 292 (827)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~-va~-sp~~~lla~g~~dg~v~vw~~~~~~~-~~ 292 (827)
..-++...+|+.+++++.|.++++|+..... .+..|.+-|. +++ .++..++|+|+-|+.|.+||+..... .+
T Consensus 76 VNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~ 155 (735)
T KOG0308|consen 76 VNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV 155 (735)
T ss_pred HhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh
Confidence 3335567889999999999999999987653 1267888876 888 88999999999999999999987322 23
Q ss_pred EEEEeecC-CCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceee
Q 003356 293 RTVSLYDW-GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (827)
Q Consensus 293 ~~l~~~~~-~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~s 371 (827)
.++....- ....++..+|.+++-++.|..+++|+..+-+++||..+++.+..|++| +..|..+..++|| ..+++
T Consensus 156 ~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH-TdNVr~ll~~dDG----t~~ls 230 (735)
T KOG0308|consen 156 ASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-TDNVRVLLVNDDG----TRLLS 230 (735)
T ss_pred hhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc-ccceEEEEEcCCC----CeEee
Confidence 22221111 112268899999999999999999999999999999999999999988 7889999999999 88888
Q ss_pred cc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeec
Q 003356 372 GT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (827)
Q Consensus 372 g~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p 445 (827)
++ ++++|+.+..+++.+...|+..+|++.. -+.+.+|+.|+.+..-++.+.....++.
T Consensus 231 ~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic---------------- 294 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC---------------- 294 (735)
T ss_pred cCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee----------------
Confidence 77 9999999999999999999999988876 4567789999888766655433322111
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEE
Q 003356 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (827)
Q Consensus 446 ~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd 479 (827)
....||..+..+.+.+-+-+++.|+.| -|.
T Consensus 295 ----k~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 295 ----KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ----cCCCchhhhhhccccCCceeeeccccceecC
Confidence 223456666666555555667777766 554
No 112
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.73 E-value=3.9e-17 Score=167.04 Aligned_cols=259 Identities=16% Similarity=0.152 Sum_probs=196.1
Q ss_pred eecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEc
Q 003356 138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (827)
Q Consensus 138 ~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 217 (827)
+-.+.+.++.|..|..|+.|...+++.... ..+.+..+.|++++
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~----------------------------------~tLaGs~g~it~~d-- 226 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELI----------------------------------STLAGSLGNITSID-- 226 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhh----------------------------------hhhhccCCCcceee--
Confidence 345557888999999998865555441111 12344556788888
Q ss_pred CCcceEEEEEeCCcEEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceE
Q 003356 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (827)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~ 293 (827)
+.++++..+..++|+..++|+....+. +.||.+.|+ +.|......+++|+.|.+|++||+.. ..+.+
T Consensus 227 --------~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~k 297 (459)
T KOG0288|consen 227 --------FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSK 297 (459)
T ss_pred --------ecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-hheec
Confidence 556677777777788888898876543 378999998 88877666699999999999999988 66666
Q ss_pred EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 003356 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
++-. ...+..|..+ +..+++|-.|++|++||..+..+..+...++ .|+++..++++ ..+.+.+
T Consensus 298 t~l~---------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g----~~lLsss 360 (459)
T KOG0288|consen 298 TVLP---------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDG----LELLSSS 360 (459)
T ss_pred cccc---------cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccCC----eEEeeec
Confidence 5432 3456666665 6788999999999999999998888887764 79999999998 5565555
Q ss_pred ---eeEEEccCCceEEEEecC------CcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEee
Q 003356 374 ---SMMQWDEYGYRLYAIEEG------SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (827)
Q Consensus 374 ---~i~~W~~~~~~l~~~~~~------~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~ 443 (827)
++.+.+..++++...... ++-.-.+|++ +.++++||.|+.+++|++..+.-.
T Consensus 361 RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE------------------ 422 (459)
T KOG0288|consen 361 RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE------------------ 422 (459)
T ss_pred CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE------------------
Confidence 778888888888776643 2323378888 889999999999999998877652
Q ss_pred eceeeccC--CCcEEEEEEcCCCCEEEEEeCCceE-EE
Q 003356 444 LPVSYISQ--NWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (827)
Q Consensus 444 ~p~~~~~~--~~~I~~va~SpdG~~lavag~dg~i-iw 478 (827)
..+... +..|.+++|+|.|.+++++++++.+ +|
T Consensus 423 --~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 423 --KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred --EEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 222222 2259999999999999999999988 88
No 113
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=8.7e-16 Score=159.32 Aligned_cols=224 Identities=15% Similarity=0.194 Sum_probs=145.8
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCC-e
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK-H 144 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~-~ 144 (827)
.+|.+++|.|+|....+.|++-||+++||+++...+. .+.++-| + .....-.+|+++|. .
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-----------~lqS~~l--~------~fPi~~a~f~p~G~~~ 272 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-----------KLQSIHL--E------KFPIQKAEFAPNGHSV 272 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-----------hheeeee--c------cCccceeeecCCCceE
Confidence 3689999999999999999999999999999754432 1222211 1 11122346778887 5
Q ss_pred EEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEE
Q 003356 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (827)
Q Consensus 145 llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (827)
+++++....++ .||-+......+. . ....+...+.. .
T Consensus 273 i~~s~rrky~y--syDle~ak~~k~~---------------~----------------~~g~e~~~~e~----------F 309 (514)
T KOG2055|consen 273 IFTSGRRKYLY--SYDLETAKVTKLK---------------P----------------PYGVEEKSMER----------F 309 (514)
T ss_pred EEecccceEEE--Eeecccccccccc---------------C----------------CCCcccchhhe----------e
Confidence 66665555554 5664433221110 0 00001111222 3
Q ss_pred EEEeCCcEEEEeeccCccccceeecccee--cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCC
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~ 301 (827)
-+++||+++++.+..+-|.+....+.+.+ ....+.+. ++|+.|++.|...+.+|.|.+||+.. ..+++++..
T Consensus 310 eVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~-~~~~~rf~D---- 384 (514)
T KOG2055|consen 310 EVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ-NSCLHRFVD---- 384 (514)
T ss_pred EecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCC-cceEEEEee----
Confidence 36788888888877777766555444322 11245566 89999999999999999999999998 677777764
Q ss_pred CCCCCCCCe--EEEEECCCCCEEEEEEcCCcEEEEeccCC------eeEEEeccccccceeeeeecCCC
Q 003356 302 YSMDDTGPV--SCIAWTPDNSAFAVGWKSRGLTVWSVSGC------RLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 302 ~~~~h~~~V--~~l~~spDg~~Lasg~~Dg~v~vWs~~~~------~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
.|.| ++++-|++|.+||+|++.|-|-|||..+. +.+.++..- ...|+++.|+++.
T Consensus 385 -----~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 385 -----DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL-TTAITSLQFNHDA 447 (514)
T ss_pred -----cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh-heeeeeeeeCcch
Confidence 4444 56788899999999999999999996543 223333322 3456777777766
No 114
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.72 E-value=5.8e-16 Score=159.32 Aligned_cols=227 Identities=19% Similarity=0.266 Sum_probs=176.3
Q ss_pred cEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 259 ~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
.++ +...|....+.+|+.|.++.++|... .+.+.++++ |+..|+.+.++|+...+++++.|..|+||++.
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s-~q~l~~~~G--------h~kki~~v~~~~~~~~v~~aSad~~i~vws~~ 291 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPS-NQILATLKG--------HTKKITSVKFHKDLDTVITASADEIIRVWSVP 291 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecch-hhhhhhccC--------cceEEEEEEeccchhheeecCCcceEEeeccc
Confidence 344 77788888999999999999999988 788889998 99999999999999999999999999999998
Q ss_pred CCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEE---ccCCceEEEEecC--CcceE--EEEec-ceeeeecc
Q 003356 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQW---DEYGYRLYAIEEG--SSERV--LIFSF-GKCCLNRG 409 (827)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W---~~~~~~l~~~~~~--~~~~v--~~~~~-~~~~~s~~ 409 (827)
.......++.| ...|+.+..+|++ +++++++....| +..++..+..... .+-.+ .+|.+ |-.+.+|.
T Consensus 292 ~~s~~~~~~~h-~~~V~~ls~h~tg----eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 292 LSSEPTSSRPH-EEPVTGLSLHPTG----EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred cccCccccccc-cccceeeeeccCC----cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC
Confidence 77766666666 7789999999999 999988855555 5555555544332 22233 45555 78889999
Q ss_pred cCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEee
Q 003356 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (827)
Q Consensus 410 ~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f 488 (827)
.|+.+++|++..+.+ ...+-+|.+||+.++|+.+|-|+|++.+|+.+ +||++.-+ .|
T Consensus 367 ~d~~vkiwdlks~~~--------------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--n~ 424 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTN--------------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--NF 424 (506)
T ss_pred CCceEEEEEcCCccc--------------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--cc
Confidence 999999999987776 67788999999999999999999999999988 99996433 44
Q ss_pred CCccceEEEEEEEEEE--eCCEEEEEEEeeCCCcEEEEEeeC
Q 003356 489 GDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPR 528 (827)
Q Consensus 489 ~~~~~e~~~~v~gl~W--~~~~li~~~~~~~~~~~~lrly~~ 528 (827)
....-+..+.+..+.+ .+.+++++ ...|++|-.
T Consensus 425 kt~~l~~~~~v~s~~fD~SGt~L~~~-------g~~l~Vy~~ 459 (506)
T KOG0289|consen 425 KTIQLDEKKEVNSLSFDQSGTYLGIA-------GSDLQVYIC 459 (506)
T ss_pred ceeeccccccceeEEEcCCCCeEEee-------cceeEEEEE
Confidence 3322222223444555 46677665 234666654
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=1.4e-15 Score=157.96 Aligned_cols=309 Identities=17% Similarity=0.179 Sum_probs=200.3
Q ss_pred CcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEE
Q 003356 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL 147 (827)
Q Consensus 68 G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv 147 (827)
-++++++++||+++...++.+|+|.=|++.++....+.-..+ + . +..--..++..........--.++++|+++++.
T Consensus 143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-e-v-~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-E-V-LKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-h-h-hhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 456899999999999999999999999998776432221110 0 0 000000001110011112233467899999999
Q ss_pred EecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEE
Q 003356 148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY 227 (827)
Q Consensus 148 ~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s 227 (827)
|..|..+++ |+.+..... ..+..+...|.+++|-...
T Consensus 220 gg~d~~v~I--w~~~t~ehv----------------------------------~~~~ghr~~V~~L~fr~gt------- 256 (479)
T KOG0299|consen 220 GGRDRHVQI--WDCDTLEHV----------------------------------KVFKGHRGAVSSLAFRKGT------- 256 (479)
T ss_pred cCCCceEEE--ecCcccchh----------------------------------hcccccccceeeeeeecCc-------
Confidence 999999987 554433221 1134566667776643322
Q ss_pred eCCcEEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCC
Q 003356 228 SNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (827)
Q Consensus 228 ~dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~ 303 (827)
.-+++++.|.++++|+...... +-||.+.+. +......+.+-+|+.|+++++|++.+..+.+ +.+
T Consensus 257 ---~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli--frg------ 325 (479)
T KOG0299|consen 257 ---SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI--FRG------ 325 (479)
T ss_pred ---cceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceee--eeC------
Confidence 3345566777888898765433 378999887 8777889999999999999999997633333 455
Q ss_pred CCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc-ccccceeeeeecCCCCCCccceeecceeEEEccCC
Q 003356 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYG 382 (827)
Q Consensus 304 ~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~-~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~ 382 (827)
|.+.+-|++|-.| ..+++|++||.|.+|++...+.+.+.+. |+.. |.. .+.+...|-
T Consensus 326 --~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~--------~~~--------~~~~~~~Wi--- 383 (479)
T KOG0299|consen 326 --GEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI--------PEL--------DPVNGNFWI--- 383 (479)
T ss_pred --CCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeecccccc--------CCc--------cccccccce---
Confidence 7889999999876 5789999999999999998888777654 3221 110 001111232
Q ss_pred ceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcC
Q 003356 383 YRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK 462 (827)
Q Consensus 383 ~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Sp 462 (827)
+ .+..+.....+++|+.+|.+++|.+..+-..+- +...+ .-.+.|.+++|++
T Consensus 384 -----t------sla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~----------------~l~~l-s~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 384 -----T------SLAVIPGSDLLASGSWSGCVRLWKIEDGLRAIN----------------LLYSL-SLVGFVNSLAFSN 435 (479)
T ss_pred -----e------eeEecccCceEEecCCCCceEEEEecCCccccc----------------eeeec-ccccEEEEEEEcc
Confidence 1 233444467889999999999999876643221 11111 2356799999999
Q ss_pred CCCEEEEEeCCceEEEEcCCCeEEee
Q 003356 463 DGMFLAVAGLHGLILYDIRQKKWRVF 488 (827)
Q Consensus 463 dG~~lavag~dg~iiwd~~t~~w~~f 488 (827)
+|+++++|-.. ...-|||+..
T Consensus 436 sgk~ivagiGk-----EhRlGRW~~~ 456 (479)
T KOG0299|consen 436 SGKRIVAGIGK-----EHRLGRWWCL 456 (479)
T ss_pred CCCEEEEeccc-----ccccceeeEe
Confidence 99977766322 2345677764
No 116
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.2e-15 Score=168.32 Aligned_cols=264 Identities=14% Similarity=0.176 Sum_probs=185.9
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
-.-|++.|+|.+++++ +++.|++|+..-+ ...++++...|. ...+..-++..+++++.+++|..|......
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd-------~e~P~ti~~~g~-~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSD-------EEEPETIDISGE-LVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCc-------ccCCchhhccCc-eeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 3458899999998888 6788999998621 133444543443 345566778899999999999999986443
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccc
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~ 180 (827)
... -+....+ ...++++..+|+.++.|++|-.|+++..+.....
T Consensus 88 ~~~----------iL~Rftl-----------p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--------------- 131 (933)
T KOG1274|consen 88 EDT----------ILARFTL-----------PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--------------- 131 (933)
T ss_pred ccc----------eeeeeec-----------cceEEEEecCCcEEEeecCceeEEEEeccccchh---------------
Confidence 210 1111111 1234577778899999999999998876644322
Q ss_pred eecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccc-cceeeccceecCCCCc
Q 003356 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKELGSGDA 259 (827)
Q Consensus 181 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~ 259 (827)
..+..++.+|.++.|+|.++.+++.+.||++.+....++.+. .|.......-......
T Consensus 132 ---------------------~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i 190 (933)
T KOG1274|consen 132 ---------------------KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRI 190 (933)
T ss_pred ---------------------eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccce
Confidence 123567888999999999888888888888888777766544 3333322110111334
Q ss_pred EE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 260 VC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 260 v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
++ ++|+|++..+|+.+.|++|++|+..+ .+....++.+. +...+.++.|||.|++||++..||.|.|||+.+
T Consensus 191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~------~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKL------SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeeeeecCCCCeEEeeccCCeEEEEccCC-ceeheeecccc------cccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 44 99999999999999999999999887 67666666543 444499999999999999999999999999986
Q ss_pred CeeEEEeccccccceeeeeecCCC
Q 003356 339 CRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 339 ~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
... ... ...|.+.+|.|+.
T Consensus 264 ~~~----~~~-~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 264 HER----HEF-KRAVCCEAWKPNA 282 (933)
T ss_pred chh----ccc-cceeEEEecCCCC
Confidence 211 111 3457777777765
No 117
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3e-15 Score=148.29 Aligned_cols=266 Identities=17% Similarity=0.225 Sum_probs=167.3
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 003356 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (827)
Q Consensus 256 h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs 335 (827)
+..+.|+.||+-|.+||+|+.||.|.+||+.+ .+.-+.+.+ |.-+|+|++||+||+.|.+++.|..+++||
T Consensus 23 ~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~lsa--------H~~pi~sl~WS~dgr~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 23 NPLAECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARMLSA--------HVRPITSLCWSRDGRKLLTSSRDWSIKLWD 93 (405)
T ss_pred CCccceEEeccCcceeeeeccCCcEEEEEccc-cchhhhhhc--------cccceeEEEecCCCCEeeeecCCceeEEEe
Confidence 44488899999999999999999999999998 666777777 999999999999999999999999999999
Q ss_pred ccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCe
Q 003356 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMT 414 (827)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~ 414 (827)
+..|.+...++-. ++|+...|+|.. ...++.........+..|+. ...++..+.|+..
T Consensus 94 l~~gs~l~rirf~--spv~~~q~hp~k-------------------~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 94 LLKGSPLKRIRFD--SPVWGAQWHPRK-------------------RNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL 152 (405)
T ss_pred ccCCCceeEEEcc--Cccceeeecccc-------------------CCeEEEEEecCCcEEEEecCCceeeccCCCcccc
Confidence 9988888777653 566666666654 11222222222233444443 1222222222110
Q ss_pred eeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccc
Q 003356 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQ 493 (827)
Q Consensus 415 ~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~ 493 (827)
+..-.+..|.+.|+|+.+|...|-+ +||.+|-+...--....
T Consensus 153 -------------------------------------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits 195 (405)
T KOG1273|consen 153 -------------------------------------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS 195 (405)
T ss_pred -------------------------------------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech
Confidence 1112234799999999999999999 99999875332111111
Q ss_pred eEEEEEEE--EEEeCCEEEEEEEeeCCCcEEEEEeeCCCCCcc-c--eEE-EE-------ecCCccEEEEccCCEEEEEE
Q 003356 494 EQKIQSKG--LLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQS-S--LLC-RK-------SLLAKPIVMDVYEDYILVTY 560 (827)
Q Consensus 494 e~~~~v~g--l~W~~~~li~~~~~~~~~~~~lrly~~~~l~~~-~--~~~-~~-------~l~~~~~~l~~~~~~llV~~ 560 (827)
.+ .|.. +.-.+..++.- ..+.-||.|....+++. . ... .+ +++=..+.++..+++++.++
T Consensus 196 ~~--~IK~I~~s~~g~~liiN-----tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 196 VQ--AIKQIIVSRKGRFLIIN-----TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS 268 (405)
T ss_pred he--eeeEEEEeccCcEEEEe-----cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence 11 2333 33456666654 34467888888633221 1 111 11 11223467788888988866
Q ss_pred cCceEEEEEEEEecccCCCCCCceEEEEEEEEe----eccCCCCCceEE
Q 003356 561 RPFDVHIFHVKLFGELTPSTTPDLQLSTVRELS----IMTAKSHPAAMR 605 (827)
Q Consensus 561 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~ 605 (827)
+. .=.+|-.+ +. ..+|+|+.|.. +..+-+||.+..
T Consensus 269 ~~-aHaLYIWE-----~~----~GsLVKILhG~kgE~l~DV~whp~rp~ 307 (405)
T KOG1273|consen 269 AR-AHALYIWE-----KS----IGSLVKILHGTKGEELLDVNWHPVRPI 307 (405)
T ss_pred cc-ceeEEEEe-----cC----CcceeeeecCCchhheeecccccceee
Confidence 42 23344333 11 23577777665 234447776654
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.8e-16 Score=150.52 Aligned_cols=251 Identities=13% Similarity=0.192 Sum_probs=171.9
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCC--cceEEEEeecCCCCCCCCCCeEEEEECC--CCCEEEEEEcC
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKS 328 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~sp--Dg~~Lasg~~D 328 (827)
..|.+.+. +...--|+.||+++.|++|+|+.+..++ .++.++.+ |.|||+.++|.. -|..||+++.|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G--------h~GPVwqv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG--------HSGPVWKVAWAHPKFGTILASCSYD 79 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecC--------CCCCeeEEeecccccCcEeeEeecC
Confidence 46888887 6666679999999999999999998855 34567777 999999999987 89999999999
Q ss_pred CcEEEEeccCCeeEEEeccc--cccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeee
Q 003356 329 RGLTVWSVSGCRLMSTIRQI--SLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCL 406 (827)
Q Consensus 329 g~v~vWs~~~~~l~~tl~~~--~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~ 406 (827)
|.|.||.-.+++ ......| +..+|++++|.|.+ +.+ .++
T Consensus 80 gkVIiWke~~g~-w~k~~e~~~h~~SVNsV~waphe--------------------ygl------------------~La 120 (299)
T KOG1332|consen 80 GKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHE--------------------YGL------------------LLA 120 (299)
T ss_pred ceEEEEecCCCc-hhhhhhhhhhcccceeecccccc--------------------cce------------------EEE
Confidence 999999998874 2222211 14456666555543 222 345
Q ss_pred ecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCC---C-----------CEEEEEeC
Q 003356 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD---G-----------MFLAVAGL 472 (827)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Spd---G-----------~~lavag~ 472 (827)
.++.||++.+........ |.. +.....|.--|.+++|.|- | +.+++||-
T Consensus 121 casSDG~vsvl~~~~~g~--------------w~t---~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc 183 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDSSGG--------------WTT---SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC 183 (299)
T ss_pred EeeCCCcEEEEEEcCCCC--------------ccc---hhhhhccccccceeeecCcCCCccccccCcccccceeeccCC
Confidence 566777776654433211 111 1223356667888888876 6 78999999
Q ss_pred CceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCC-----EEEEEEEeeCCCcEEEEEeeCC-CCCccceEEEEecCCc
Q 003356 473 HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK-----IIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLLAK 545 (827)
Q Consensus 473 dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~-----~li~~~~~~~~~~~~lrly~~~-~l~~~~~~~~~~l~~~ 545 (827)
|.++ +|...+++|++-... ..+.--|++++|.+. ..|+.| +.+..+-+|... ....-.....+++|..
T Consensus 184 Dn~VkiW~~~~~~w~~e~~l-~~H~dwVRDVAwaP~~gl~~s~iAS~----SqDg~viIwt~~~e~e~wk~tll~~f~~~ 258 (299)
T KOG1332|consen 184 DNLVKIWKFDSDSWKLERTL-EGHKDWVRDVAWAPSVGLPKSTIASC----SQDGTVIIWTKDEEYEPWKKTLLEEFPDV 258 (299)
T ss_pred ccceeeeecCCcchhhhhhh-hhcchhhhhhhhccccCCCceeeEEe----cCCCcEEEEEecCccCcccccccccCCcc
Confidence 9999 999999999863221 112224888999643 233332 233567788886 4333222223346665
Q ss_pred cEEE--EccCCEEEEEEcCceEEEEEEEEe
Q 003356 546 PIVM--DVYEDYILVTYRPFDVHIFHVKLF 573 (827)
Q Consensus 546 ~~~l--~~~~~~llV~~~~~~i~l~~~~~~ 573 (827)
...+ +..+++|.|.+.|..+.+|.-..+
T Consensus 259 ~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 259 VWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred eEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 5555 468999999999999999975543
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.70 E-value=2.1e-16 Score=164.66 Aligned_cols=264 Identities=13% Similarity=0.131 Sum_probs=193.7
Q ss_pred EEEEecceEEEEEccCeEEEeecCCceeE--EEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCce
Q 003356 25 IYFKVNNGLLLIASPCHIELWSSSQHKVR--LGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (827)
Q Consensus 25 v~fspdg~lla~~~~~~v~IW~~~~~~~~--l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~ 102 (827)
+.+|...++.-+++.+.|+|||+.+|+.+ +..+ ..+.....+.++..+|||+.|.|++...+|-|||+......
T Consensus 425 vtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqL----dcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr 500 (705)
T KOG0639|consen 425 VTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQL----DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR 500 (705)
T ss_pred EEecCCcceeEecCCCeEEEeeccCCCCCCccccc----cccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc
Confidence 56788888988999999999999765421 2211 11223345578999999999999999999999999754421
Q ss_pred eecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCccccee
Q 003356 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (827)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~ 182 (827)
++....-.+..-...++++|.+..+.++.||.|.+|+...+....
T Consensus 501 -------------------ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr---------------- 545 (705)
T KOG0639|consen 501 -------------------IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR---------------- 545 (705)
T ss_pred -------------------hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee----------------
Confidence 122211112222344677888889999999999986554333211
Q ss_pred cccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceecCCC---Cc
Q 003356 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG---DA 259 (827)
Q Consensus 183 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~ 259 (827)
.+.++...+.+|+ ++.||.-+-++..|.+++-||...+.+...|. ..
T Consensus 546 --------------------qfqGhtDGascId----------is~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 546 --------------------QFQGHTDGASCID----------ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred --------------------cccCCCCCceeEE----------ecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 1223333344444 88999999999999999999999887776554 23
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC
Q 003356 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 260 v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~ 339 (827)
..+...|++.++|+|-+++.|.|-... +.....+.. |..-|.++.|++-|+++++.+.|+-+-.|.+.-|
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~s--kp~kyqlhl--------heScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTS--KPEKYQLHL--------HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecC--Cccceeecc--------cccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 448889999999999999999886654 344455666 8899999999999999999999999999998766
Q ss_pred eeEEEeccccccceeeeeecCCCCCCccceeecc
Q 003356 340 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 340 ~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
..+...++ .++|.++.+|.++ .++++|+
T Consensus 666 asiFqskE--~SsVlsCDIS~dd----kyIVTGS 693 (705)
T KOG0639|consen 666 ASIFQSKE--SSSVLSCDISFDD----KYIVTGS 693 (705)
T ss_pred cceeeccc--cCcceeeeeccCc----eEEEecC
Confidence 65555554 4678888888887 7777665
No 120
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=1.7e-15 Score=150.33 Aligned_cols=237 Identities=13% Similarity=0.226 Sum_probs=167.0
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCC--EEEEEEcCCc
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRG 330 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~--~Lasg~~Dg~ 330 (827)
..|..++. +|+ ++.++|+|+.|-+|+|||+.. ...+..+-. |.|.|+++.|.|+-. .|.+|++||.
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k-~~qlg~ll~--------HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRK-RKQLGILLS--------HAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccc-hhhhcceec--------cccceEEEEecCCcchhheeeecCCCc
Confidence 45777776 887 689999999999999999988 666666666 999999999999876 9999999999
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeeccc
Q 003356 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV 410 (827)
Q Consensus 331 v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~ 410 (827)
|.+|++..=.++.+++.| ...|+.++.+|.+ |.+++.+.
T Consensus 109 i~iw~~~~W~~~~slK~H-~~~Vt~lsiHPS~----------------------------------------KLALsVg~ 147 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAH-KGQVTDLSIHPSG----------------------------------------KLALSVGG 147 (362)
T ss_pred EEEEEcCCeEEeeeeccc-ccccceeEecCCC----------------------------------------ceEEEEcC
Confidence 999999988889999888 5558877777765 34456677
Q ss_pred CCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEcCCCeEEeeCC
Q 003356 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGD 490 (827)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~~t~~w~~f~~ 490 (827)
|+.++.|++..+.... -.-+.+.. ..+.|+|.|.+++++++++.-+|.+.+-+ +|..
T Consensus 148 D~~lr~WNLV~Gr~a~-------------------v~~L~~~a--t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~--v~~~ 204 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAF-------------------VLNLKNKA--TLVSWSPQGDHFVVSGRNKIDIYQLDNAS--VFRE 204 (362)
T ss_pred CceeeeehhhcCccce-------------------eeccCCcc--eeeEEcCCCCEEEEEeccEEEEEecccHh--Hhhh
Confidence 8888888877766521 01112222 23999999999999999997799987653 4433
Q ss_pred ccceEEEEEEEEEEe-CCEEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEecCCccEEEEc----cCCEEEEEEcCceE
Q 003356 491 ITQEQKIQSKGLLWL-GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDV----YEDYILVTYRPFDV 565 (827)
Q Consensus 491 ~~~e~~~~v~gl~W~-~~~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~~~~~~l~~----~~~~llV~~~~~~i 565 (827)
...+ ..+..+.|. +..+++|..+ ..++++..+. .........++..+.-+-+ ...+|+.+++||.|
T Consensus 205 i~~~--~r~l~~~~l~~~~L~vG~d~-----~~i~~~D~ds--~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 205 IENP--KRILCATFLDGSELLVGGDN-----EWISLKDTDS--DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred hhcc--ccceeeeecCCceEEEecCC-----ceEEEeccCC--CccceeeecchhheeeeEEEecCCceEEEEeccCceE
Confidence 3222 224456675 5577776222 4567776651 1111112223333433333 33466668889999
Q ss_pred EEEEEEEec
Q 003356 566 HIFHVKLFG 574 (827)
Q Consensus 566 ~l~~~~~~~ 574 (827)
++|++.+..
T Consensus 276 ~vWd~~~~~ 284 (362)
T KOG0294|consen 276 KVWDIDMET 284 (362)
T ss_pred EEEEccccc
Confidence 999998753
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.70 E-value=4.6e-15 Score=154.36 Aligned_cols=250 Identities=14% Similarity=0.161 Sum_probs=172.3
Q ss_pred cccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccc
Q 003356 124 EQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDH 203 (827)
Q Consensus 124 ~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~ 203 (827)
.++..++...+++.+--+.+.+++.+..+.+++|+.......... .. .+.++ ..
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-------~~-----~~~Pd--------------l~ 172 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA-------SG-----ECRPD--------------LR 172 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc-------cc-----cCCCc--------------eE
Confidence 334445555566666666677888889999999766543322110 00 00000 01
Q ss_pred cCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce----------ecCCCCcEE-EEEcCC-CCEE
Q 003356 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----------ELGSGDAVC-ASIAPE-QQIL 271 (827)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~----------~~~h~~~v~-va~sp~-~~ll 271 (827)
+..+...-.++.|++... -.+++++++.++.+|+...... ..+|++.|. ++|++. ..++
T Consensus 173 L~gH~~eg~glsWn~~~~---------g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF 243 (422)
T KOG0264|consen 173 LKGHEKEGYGLSWNRQQE---------GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLF 243 (422)
T ss_pred EEeecccccccccccccc---------eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhh
Confidence 111211122234444332 2345556677777787653221 268999999 999985 5789
Q ss_pred EEEecCCeEEEEEcCCC-CcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccC-CeeEEEeccc
Q 003356 272 AVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQI 348 (827)
Q Consensus 272 a~g~~dg~v~vw~~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~-~~l~~tl~~~ 348 (827)
++++.|+.+.|||++.. .+..+...+ |+++|.|++|+| ++..||+|+.|++|++||+.. .+.+.++.+|
T Consensus 244 ~sv~dd~~L~iwD~R~~~~~~~~~~~a--------h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H 315 (422)
T KOG0264|consen 244 GSVGDDGKLMIWDTRSNTSKPSHSVKA--------HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH 315 (422)
T ss_pred eeecCCCeEEEEEcCCCCCCCcccccc--------cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC
Confidence 99999999999999851 344445555 999999999999 778999999999999999965 3467888888
Q ss_pred cccceeeeeecCCCCCCccceeecc---eeEEEccCC--------------ceEEEEecCCcceEEEEec----ceeeee
Q 003356 349 SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG--------------YRLYAIEEGSSERVLIFSF----GKCCLN 407 (827)
Q Consensus 349 ~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~--------------~~l~~~~~~~~~~v~~~~~----~~~~~s 407 (827)
...|..+.|+|..+ ..+++++ ...+||... -+++.+-.||...|..|++ .-.++|
T Consensus 316 -~dev~~V~WSPh~e---tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 316 -EDEVFQVEWSPHNE---TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS 391 (422)
T ss_pred -CcceEEEEeCCCCC---ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEE
Confidence 77899999999872 3344443 889998742 2456777899999988887 557889
Q ss_pred cccCCCeeeeEEE
Q 003356 408 RGVSGMTYARQVI 420 (827)
Q Consensus 408 ~~~d~~~~~w~~~ 420 (827)
++.|+.+++|...
T Consensus 392 vaeDN~LqIW~~s 404 (422)
T KOG0264|consen 392 VAEDNILQIWQMA 404 (422)
T ss_pred ecCCceEEEeecc
Confidence 9999999999864
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=8.7e-16 Score=147.18 Aligned_cols=235 Identities=19% Similarity=0.157 Sum_probs=167.5
Q ss_pred CCcEEEEeeccCccccceeeccc------eecCCCCcEE-EEEcC--CCCEEEEEecCCeEEEEEcCCCCcce--EEEEe
Q 003356 229 NGQLMSCSVSKKGLKLAEFIKID------KELGSGDAVC-ASIAP--EQQILAVGTRRGVVELYDLAESASLI--RTVSL 297 (827)
Q Consensus 229 dG~~~~~~~~~~~~~~~~~~~~~------~~~~h~~~v~-va~sp--~~~lla~g~~dg~v~vw~~~~~~~~~--~~l~~ 297 (827)
-|+.+++++.|+++|++...... .+.||.+++. ++|.+ -|.+||+++.||.|.||.-.. ++-. .....
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~-g~w~k~~e~~~ 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN-GRWTKAYEHAA 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC-Cchhhhhhhhh
Confidence 37777777778888777655432 2379999999 88865 689999999999999999766 4322 23333
Q ss_pred ecCCCCCCCCCCeEEEEECCCC--CEEEEEEcCCcEEEEeccCC--eeEEEeccccccceeeeeecCCCCC---------
Q 003356 298 YDWGYSMDDTGPVSCIAWTPDN--SAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDC--------- 364 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spDg--~~Lasg~~Dg~v~vWs~~~~--~l~~tl~~~~~~~v~s~~~sp~~~~--------- 364 (827)
|.+.|++++|.|.+ -.||.|+.||.|.|.+..+. -....+...+.-.|+++.+.|....
T Consensus 101 --------h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~ 172 (299)
T KOG1332|consen 101 --------HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPA 172 (299)
T ss_pred --------hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcc
Confidence 99999999999964 58999999999999988543 2233333333567888988886321
Q ss_pred -Cccceeecc---eeEEEccCCce--EEEEecCCcceEEE--Eec-----ceeeeecccCCCeeeeEEEEcCCeEEEEec
Q 003356 365 -KYEPLMSGT---SMMQWDEYGYR--LYAIEEGSSERVLI--FSF-----GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (827)
Q Consensus 365 -~~~~l~sg~---~i~~W~~~~~~--l~~~~~~~~~~v~~--~~~-----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~ 431 (827)
+-..+++|. .+++|..+.++ +-..+++|.+.|.. ..+ ...+++++.|+++.+|.......
T Consensus 173 ~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e------- 245 (299)
T KOG1332|consen 173 AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE------- 245 (299)
T ss_pred cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC-------
Confidence 113477776 88999887652 33446788887733 332 34689999999999998652211
Q ss_pred CCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcC-CCeEEeeC
Q 003356 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-QKKWRVFG 489 (827)
Q Consensus 432 ~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~-t~~w~~f~ 489 (827)
.|+ ++-+..-..++.+++||+.|..||+++.|..+ +|--. .|+|+..+
T Consensus 246 ------~wk----~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 246 ------PWK----KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVG 295 (299)
T ss_pred ------ccc----ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEcc
Confidence 121 11112234579999999999999999999999 99654 56888654
No 123
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.70 E-value=5.5e-16 Score=148.75 Aligned_cols=183 Identities=13% Similarity=0.241 Sum_probs=150.7
Q ss_pred EEEEeCCcEEEEeeccCccccceeeccc----eecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEee
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID----KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~ 298 (827)
++|+.|.+.+++++.+.-+++++...++ ...+|...++ +-|-...+.|.+.+.|++||+||..+ +..++++..
T Consensus 106 ~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT-gt~v~sL~~- 183 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT-GTEVQSLEF- 183 (334)
T ss_pred EEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc-CcEEEEEec-
Confidence 5688999999999998888888877553 2378999998 88887777788889999999999999 888888875
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---ee
Q 003356 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (827)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i 375 (827)
..+|+++..++||.+|.++.. ++|++||...-.++...... ..|.+...+|+. +.++.|. .+
T Consensus 184 --------~s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lKs~k~P--~nV~SASL~P~k----~~fVaGged~~~ 248 (334)
T KOG0278|consen 184 --------NSPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLKSYKMP--CNVESASLHPKK----EFFVAGGEDFKV 248 (334)
T ss_pred --------CCCCcceeeccCCCEEEEecC-ceeEEeccccccceeeccCc--cccccccccCCC----ceEEecCcceEE
Confidence 678999999999999999887 89999999887777766543 457888888886 7777776 66
Q ss_pred EEEccCCceEEEEe-cCCcceEEEEec---ceeeeecccCCCeeeeEEEEcC
Q 003356 376 MQWDEYGYRLYAIE-EGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGE 423 (827)
Q Consensus 376 ~~W~~~~~~l~~~~-~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~ 423 (827)
..+|..+++-+... ++|.+.|.+++| +...++||.||++++|...-+.
T Consensus 249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 77888888777664 789999966666 8999999999999999865443
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=7.2e-16 Score=169.03 Aligned_cols=284 Identities=14% Similarity=0.192 Sum_probs=189.1
Q ss_pred ccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEe
Q 003356 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL 149 (827)
Q Consensus 70 ~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t 149 (827)
..++.-.+|-..|+++... .+++|.+....... ....+.+.+...-.....|.-=..+.+.|++++
T Consensus 42 ~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~-------------~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s 107 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRS-LLKLYAINPNDFSE-------------KCNHRFKTKQNKFYSAADVKWGQLYSNLIATCS 107 (839)
T ss_pred cceEeecCCcceeEEeccc-ceeeEeeCcccCCc-------------ceeeecccccceeeehhhcccccchhhhheeec
Confidence 3566777888888888644 78899886432110 000011111111111111111134567899999
Q ss_pred cCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeC
Q 003356 150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN 229 (827)
Q Consensus 150 ~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~d 229 (827)
.+|.|.+|+......... + ..+.++...+.+++|++ ..
T Consensus 108 ~nG~i~vWdlnk~~rnk~-l--------------------------------~~f~EH~Rs~~~ldfh~---------te 145 (839)
T KOG0269|consen 108 TNGVISVWDLNKSIRNKL-L--------------------------------TVFNEHERSANKLDFHS---------TE 145 (839)
T ss_pred CCCcEEEEecCccccchh-h--------------------------------hHhhhhccceeeeeecc---------CC
Confidence 999998854432111111 0 12455666777777554 34
Q ss_pred CcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCC
Q 003356 230 GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (827)
Q Consensus 230 G~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~-~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~ 304 (827)
-.++++++.|+++|.||....+.. .+....++ |.|+|. +..+|++..+|.+++||++...++...+..
T Consensus 146 p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A------- 218 (839)
T KOG0269|consen 146 PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA------- 218 (839)
T ss_pred ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc-------
Confidence 567888999999999998754332 45677888 999984 778999999999999999986677777777
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee--EEEeccccccceeeeeecCCCCCCccceeecc-----eeEE
Q 003356 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-----SMMQ 377 (827)
Q Consensus 305 ~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l--~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-----~i~~ 377 (827)
|.|+|.|+.|+|++.+||+|++|++|+||++.+++. +.++.. ..+|..+.|.|... ..+++.+ .+.+
T Consensus 219 -H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT--iapv~rVkWRP~~~---~hLAtcsmv~dtsV~V 292 (839)
T KOG0269|consen 219 -HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT--IAPVGRVKWRPARS---YHLATCSMVVDTSVHV 292 (839)
T ss_pred -ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee--cceeeeeeeccCcc---chhhhhhccccceEEE
Confidence 999999999999999999999999999999987654 333332 46788999999762 2334333 7899
Q ss_pred EccCC-ceEEEEecCCcceEEEEec----ceeeeecccCCCeeeeEEEEc
Q 003356 378 WDEYG-YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYG 422 (827)
Q Consensus 378 W~~~~-~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~ 422 (827)
||... |-...+...|...+..+.+ ...+.+++.|+++....+..+
T Consensus 293 WDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 293 WDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred EeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 99865 4456677778776644443 335567777777655444333
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.68 E-value=1.8e-15 Score=164.18 Aligned_cols=213 Identities=14% Similarity=0.182 Sum_probs=173.4
Q ss_pred eCCcEEEEeeccCccccceeecccee-----cCCCCcEE--EEEc-CCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 228 SNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC--ASIA-PEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 228 ~dG~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~--va~s-p~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
.++..++.++.|+++++|.....+.. .+|...+. +++- .++-.+.+|+.|++|.+|.... ..++.++++
T Consensus 23 ~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~-~~P~~~Lkg-- 99 (745)
T KOG0301|consen 23 TDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ-AEPLYTLKG-- 99 (745)
T ss_pred cCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC-CCchhhhhc--
Confidence 44556777788999999987543322 33444332 4444 3555689999999999999988 888999999
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeE
Q 003356 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~ 376 (827)
|.+.|+|++--.++. ++||+.|.++++|-.. ++..++.+| +.+|+++++-|.+ .+++|+ +++
T Consensus 100 ------H~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH-~asVWAv~~l~e~-----~~vTgsaDKtIk 164 (745)
T KOG0301|consen 100 ------HKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGH-TASVWAVASLPEN-----TYVTGSADKTIK 164 (745)
T ss_pred ------cccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCc-chheeeeeecCCC-----cEEeccCcceee
Confidence 999999999988998 9999999999999764 566678888 8899999988874 667777 899
Q ss_pred EEccCCceEEEEecCCcceEEEEec--ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCc
Q 003356 377 QWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (827)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~ 454 (827)
.|.. ++++.++.+|.+.|..+.. ...++|++.||.++.|++ .++. ...+.+|..-
T Consensus 165 lWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~--------------------l~~~~ghtn~ 221 (745)
T KOG0301|consen 165 LWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEV--------------------LLEMHGHTNF 221 (745)
T ss_pred eccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCce--------------------eeeeeccceE
Confidence 9984 7788999999999976666 558999999999999997 3333 5678899999
Q ss_pred EEEEEEcCCCCEEEEEeCCceE-EEEcC
Q 003356 455 VQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (827)
Q Consensus 455 I~~va~SpdG~~lavag~dg~i-iwd~~ 481 (827)
|.+++...++..++++|+|+++ +|+..
T Consensus 222 vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEEEecCCCCeEEEecCCceEEEeecC
Confidence 9999999999999999999999 99864
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.8e-16 Score=160.59 Aligned_cols=264 Identities=14% Similarity=0.125 Sum_probs=179.4
Q ss_pred eEEEEE--ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCC
Q 003356 32 GLLLIA--SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (827)
Q Consensus 32 ~lla~~--~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~ 109 (827)
.+++++ ....|.+|.+. +..... ......|++.+++-+|+|.+|+.+|-.|.|.+|.+.++.--.
T Consensus 51 ~yllsaq~~rp~l~vw~i~-k~~~~~------q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~------ 117 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEIL-KKDQVV------QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN------ 117 (476)
T ss_pred hheeeecccCccccccccC-chhhhh------hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH------
Confidence 356665 34579999996 333322 123346999999999999999999999999999998664210
Q ss_pred CCCceeeeEeeEeecccccccccceEEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCC
Q 003356 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (827)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~ 187 (827)
.+..+--+|+|+ +.|+..++.|++||.|.+|....-..... .+ ...|
T Consensus 118 -----------------v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~--------~~--~~~p---- 166 (476)
T KOG0646|consen 118 -----------------VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN--------DH--SVKP---- 166 (476)
T ss_pred -----------------HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc--------CC--Cccc----
Confidence 123344456665 56678899999999998865432111100 00 0000
Q ss_pred CCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceec---CCCCcEEEEE
Q 003356 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL---GSGDAVCASI 264 (827)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~va~ 264 (827)
...+..++-.|+++...... +++ .+++++.|.++++|+...+..+. .-....++++
T Consensus 167 -------------~~~f~~HtlsITDl~ig~Gg-------~~~-rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~l 225 (476)
T KOG0646|consen 167 -------------LHIFSDHTLSITDLQIGSGG-------TNA-RLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVAL 225 (476)
T ss_pred -------------eeeeccCcceeEEEEecCCC-------ccc-eEEEecCCceEEEEEeccceeeEEEecCCcceeEEE
Confidence 12345667778888733321 333 45677889999999988776542 1223334999
Q ss_pred cCCCCEEEEEecCCeEEEEEcCCCCc-------ceEEEEeecCCCCCCCCC--CeEEEEECCCCCEEEEEEcCCcEEEEe
Q 003356 265 APEQQILAVGTRRGVVELYDLAESAS-------LIRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (827)
Q Consensus 265 sp~~~lla~g~~dg~v~vw~~~~~~~-------~~~~l~~~~~~~~~~h~~--~V~~l~~spDg~~Lasg~~Dg~v~vWs 335 (827)
.|-.+.+.+|+.+|.|.+.++..... ..+.....+.....+|.+ +|+|++.+-||++|++|++||.|+|||
T Consensus 226 Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 226 DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 99999999999999999887754110 011112222233445888 999999999999999999999999999
Q ss_pred ccCCeeEEEeccccccceeeeeecCC
Q 003356 336 VSGCRLMSTIRQISLSSISSPIVKPN 361 (827)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (827)
+.+.++++++... .++|+.+.+.|-
T Consensus 306 i~S~Q~iRtl~~~-kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 306 IYSKQCIRTLQTS-KGPVTNLQINPL 330 (476)
T ss_pred cchHHHHHHHhhh-ccccceeEeecc
Confidence 9999999888743 456777776443
No 127
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=3.1e-15 Score=159.47 Aligned_cols=277 Identities=17% Similarity=0.201 Sum_probs=183.6
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCC--EEEEEEcCCc
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRG 330 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~--~Lasg~~Dg~ 330 (827)
.||++.+. +++.|.|.+||+|+.||+||||.+.+ +++++++.. .+.|.|++|+|.+. .||++-.+.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~~---------d~~I~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQF---------DSEIRSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEee---------cceeEEEEecCCCCceeEEEEecCc-
Confidence 68999887 99999999999999999999999999 999998876 66899999999654 677777654
Q ss_pred EEEEec-cCCeeEEEeccccccceeeeeecCCCCCCccceeec-------ceeEEEccCCc---e-EEEEecCCcceEEE
Q 003356 331 LTVWSV-SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-------TSMMQWDEYGY---R-LYAIEEGSSERVLI 398 (827)
Q Consensus 331 v~vWs~-~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg-------~~i~~W~~~~~---~-l~~~~~~~~~~v~~ 398 (827)
+.|-+. +|.++..... . +.+.++ ..+..|..... + -+.+.-.|...|.+
T Consensus 466 ~~ivnp~~G~~~e~~~t---------------~----ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~ 526 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPT---------------K----ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ 526 (733)
T ss_pred eEEeCccccchhhhcch---------------h----hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce
Confidence 555554 3422211000 0 112211 15677876521 1 11222245566766
Q ss_pred Eec---ceeeeecccCCCee---eeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeC
Q 003356 399 FSF---GKCCLNRGVSGMTY---ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (827)
Q Consensus 399 ~~~---~~~~~s~~~d~~~~---~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~ 472 (827)
+++ |.++++.+.++..+ ++++..... |.|.. ...+-|.++.|.|...++++|++
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s------------------Q~PF~--kskG~vq~v~FHPs~p~lfVaTq 586 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS------------------QSPFR--KSKGLVQRVKFHPSKPYLFVATQ 586 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEecccccc------------------cCchh--hcCCceeEEEecCCCceEEEEec
Confidence 666 88999888766443 333322222 23432 33456899999999999999999
Q ss_pred CceEEEEcCCCeEEeeCCccceEEEEEEEEEE--eCCEEEEEEEeeCCCcEEEEEeeCC----CCCccceEEEEecCCcc
Q 003356 473 HGLILYDIRQKKWRVFGDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRY----HLDQSSLLCRKSLLAKP 546 (827)
Q Consensus 473 dg~iiwd~~t~~w~~f~~~~~e~~~~v~gl~W--~~~~li~~~~~~~~~~~~lrly~~~----~l~~~~~~~~~~l~~~~ 546 (827)
+...+||+..++- -....+....+..|+- .|+.+|+++++..-.++.|.+-+++ .++...+...-.++.-|
T Consensus 587 ~~vRiYdL~kqel---vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP 663 (733)
T KOG0650|consen 587 RSVRIYDLSKQEL---VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP 663 (733)
T ss_pred cceEEEehhHHHH---HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc
Confidence 9988999976431 0011122333444544 3689999999888888888777664 24444444444455555
Q ss_pred EEEEccCCEEEEEEcCceEEEEEEEEecccCCCCCCceEEEEEEEEe
Q 003356 547 IVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELS 593 (827)
Q Consensus 547 ~~l~~~~~~llV~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (827)
++.++ +.|++++|||-.++.++ ..++.+.+.++...+
T Consensus 664 Lfas~--------sdDgtv~Vfhg~VY~Dl--~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 664 LFASG--------SDDGTVIVFHGMVYNDL--LQNPLIVPLKRLRGH 700 (733)
T ss_pred eeeee--------cCCCcEEEEeeeeehhh--hcCCceEeeeeccCc
Confidence 55555 67899999999998887 567777776654433
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.3e-14 Score=142.13 Aligned_cols=281 Identities=11% Similarity=0.169 Sum_probs=178.7
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhh-hcCcccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQ-REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~-~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~ 99 (827)
..++.||+-|.+||++ .+++|.|||.. +. |..+-+. +--++.+++|||||+.|.+++.|..+.+||+..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-T~-------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFD-TF-------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcc-cc-------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence 6678999999999998 78999999996 32 2222232 3367899999999999999999999999999755
Q ss_pred CceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCccc
Q 003356 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (827)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i 179 (827)
..... +. +.. +|.. ..|-.......
T Consensus 98 s~l~r-----------------ir----f~s---pv~~-------------------~q~hp~k~n~~------------ 122 (405)
T KOG1273|consen 98 SPLKR-----------------IR----FDS---PVWG-------------------AQWHPRKRNKC------------ 122 (405)
T ss_pred CceeE-----------------EE----ccC---ccce-------------------eeeccccCCeE------------
Confidence 42110 01 110 1100 01111110000
Q ss_pred ceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEee-ccCccccceeeccceecCCCC
Q 003356 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKELGSGD 258 (827)
Q Consensus 180 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~~~~~~~~~~~~~~~~~~h~~ 258 (827)
-+.-|..++ ..+.++ |+..-+... +++.. ...
T Consensus 123 ------------------------------va~~~~~sp---~vi~~s-~~~h~~Lp~d~d~dl-------------n~s 155 (405)
T KOG1273|consen 123 ------------------------------VATIMEESP---VVIDFS-DPKHSVLPKDDDGDL-------------NSS 155 (405)
T ss_pred ------------------------------EEEEecCCc---EEEEec-CCceeeccCCCcccc-------------ccc
Confidence 000000000 001111 122111111 11111 012
Q ss_pred cEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 259 ~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
+-+..|.+.|++|.+|..-|.+.+|+..+ .+++..++.. ....|+.+.++-.|.+|+.-..|+.||+++...
T Consensus 156 as~~~fdr~g~yIitGtsKGkllv~~a~t-~e~vas~rit-------s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 156 ASHGVFDRRGKYIITGTSKGKLLVYDAET-LECVASFRIT-------SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred cccccccCCCCEEEEecCcceEEEEecch-heeeeeeeec-------hheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 23357899999999999999999999988 7777777661 236899999999999999999999999999852
Q ss_pred C-------ee--EEEeccc-cccceeeeeecCCCCCCccceeecc----eeEEEccCCceEEEEecCCcce-EEE--Eec
Q 003356 339 C-------RL--MSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSER-VLI--FSF 401 (827)
Q Consensus 339 ~-------~l--~~tl~~~-~~~~v~s~~~sp~~~~~~~~l~sg~----~i~~W~~~~~~l~~~~~~~~~~-v~~--~~~ 401 (827)
- .. .+.+++- ....-.++.|+.+| +++..|+ ...+|....|.++..+.|.++. +.. ..+
T Consensus 228 i~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg----eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp 303 (405)
T KOG1273|consen 228 IDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG----EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP 303 (405)
T ss_pred hcccCccCCcChhHHHHHHHhhhhhhheeecCCc----cEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc
Confidence 1 11 1111110 01123467888888 8777766 6789999999999999988744 443 445
Q ss_pred ceeeeecccCCCeeeeEEEEcCC
Q 003356 402 GKCCLNRGVSGMTYARQVIYGED 424 (827)
Q Consensus 402 ~~~~~s~~~d~~~~~w~~~~~~~ 424 (827)
.+.++..-..|.+++|...+-++
T Consensus 304 ~rp~i~si~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 304 VRPIIASIASGVVYIWAVVQVEN 326 (405)
T ss_pred ceeeeeeccCCceEEEEeecccc
Confidence 55555555888999998766544
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=9.1e-15 Score=151.85 Aligned_cols=262 Identities=17% Similarity=0.253 Sum_probs=177.6
Q ss_pred CceEEEEEecceEEEEEc-cCeEEEeecCCceeE-EEEEEeChHhhhhcCcccEEEEcCCcc-EEEEEecCcEEEEEEEE
Q 003356 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVR-LGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQ 97 (827)
Q Consensus 21 ~~~vv~fspdg~lla~~~-~~~v~IW~~~~~~~~-l~~~~r~~~s~~~~G~~~~v~wSPDg~-~lav~t~dg~l~l~~v~ 97 (827)
.-.+|.|.|...++.+++ +++++|+.++....+ +.... + +.-++.+++|+|+|+ .+++++...|+..||++
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-----l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-----L-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-----e-ccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 456799999999888874 889999998622211 22111 1 224567899999999 89999999999999998
Q ss_pred ecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCc-cCcceeecccCCCC
Q 003356 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGE-FYGAFELVHSSNDS 176 (827)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~-~~~~~~l~~~p~~~ 176 (827)
+........ ..++ ......-..++.++..|++.+.+|.|+++.-... .....
T Consensus 289 ~ak~~k~~~---~~g~---------------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~--------- 341 (514)
T KOG2055|consen 289 TAKVTKLKP---PYGV---------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF--------- 341 (514)
T ss_pred ccccccccC---CCCc---------------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------
Confidence 655322111 0000 0011122345778889999999999988643211 11111
Q ss_pred cccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---
Q 003356 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--- 253 (827)
Q Consensus 177 ~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~--- 253 (827)
.-.+.+.++. |++||+.++++..++.+.+|+.....+.
T Consensus 342 -----------------------------KieG~v~~~~----------fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 342 -----------------------------KIEGVVSDFT----------FSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred -----------------------------eeccEEeeEE----------EecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 0122344444 7789988888888888889998766543
Q ss_pred --cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCC-----CcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 003356 254 --LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (827)
Q Consensus 254 --~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~-----~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~ 326 (827)
.|....+.++.|++++++|+|+..|.|-|||.++. .+++.++.. -+..|++++|+||++.||.++
T Consensus 383 ~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN--------Ltt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 383 VDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN--------LTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred eecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh--------hheeeeeeeeCcchhhhhhhh
Confidence 23233445788899999999999999999996541 133333333 466799999999999988776
Q ss_pred --cCCcEEEEeccCCeeEEEecccc--ccceeeeeecCCC
Q 003356 327 --KSRGLTVWSVSGCRLMSTIRQIS--LSSISSPIVKPNQ 362 (827)
Q Consensus 327 --~Dg~v~vWs~~~~~l~~tl~~~~--~~~v~s~~~sp~~ 362 (827)
.++.+|+-.+.+...+..+...+ ...|++++|+|.+
T Consensus 455 ~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 455 RVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS 494 (514)
T ss_pred hccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC
Confidence 46789999888877666554321 2458899999977
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.6e-16 Score=172.71 Aligned_cols=216 Identities=16% Similarity=0.185 Sum_probs=179.9
Q ss_pred EeCCcEEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCC
Q 003356 227 YSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (827)
Q Consensus 227 s~dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~ 302 (827)
-..++.++++..+..+.+|....+.. +.+|+..+. +.|+++..+||.|+.+|+|++||+.. ...++++.+
T Consensus 37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtg----- 110 (825)
T KOG0267|consen 37 RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTG----- 110 (825)
T ss_pred eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-hhhhhhhhc-----
Confidence 56678888887777777887665433 378999997 99999999999999999999999998 888999988
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEc
Q 003356 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (827)
Q Consensus 303 ~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~ 379 (827)
|...+.++.|+|-|.+.|+|+.|+.+++||....-|..+.++| ...|..++|+|+| ..+++|. ++.+||
T Consensus 111 ---h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP~G----r~v~~g~ed~tvki~d 182 (825)
T KOG0267|consen 111 ---HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSPDG----RWVASGGEDNTVKIWD 182 (825)
T ss_pred ---cccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecCCC----ceeeccCCcceeeeec
Confidence 9999999999999999999999999999999877788888885 7789999999999 7888776 799999
Q ss_pred cCCceEEEEecCCcceEEEEec--ce-eeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEE
Q 003356 380 EYGYRLYAIEEGSSERVLIFSF--GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (827)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~--~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~ 456 (827)
...+++...++.|.+.+..+.+ .+ .+++|+.|+++++|++.+-+- ..........|+
T Consensus 183 ~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~--------------------I~s~~~~~~~v~ 242 (825)
T KOG0267|consen 183 LTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV--------------------ISSGKPETDGVR 242 (825)
T ss_pred ccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE--------------------eeccCCccCCce
Confidence 9999999999989988876666 33 467899999999999753211 111122245799
Q ss_pred EEEEcCCCCEEEEEeCCceE
Q 003356 457 HVAASKDGMFLAVAGLHGLI 476 (827)
Q Consensus 457 ~va~SpdG~~lavag~dg~i 476 (827)
+.+|+|||+.+++|-+..+.
T Consensus 243 ~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 243 SLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred eeeecCCceeeecCchhhhh
Confidence 99999999999998776533
No 131
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.65 E-value=1.7e-14 Score=142.58 Aligned_cols=269 Identities=15% Similarity=0.171 Sum_probs=164.0
Q ss_pred CceEEEEEec-ceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 003356 21 SQQIIYFKVN-NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (827)
Q Consensus 21 ~~~vv~fspd-g~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~ 98 (827)
+-+.++|||. ..++++.+ |++|++|++. ....+.. + ......|++.+++||-||+.+++++.|+.+++||+++
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq-~~g~~~~--k--a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQ-NSGQLVP--K--AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEe-cCCcccc--h--hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 4567999995 45665554 8999999994 3212211 1 2223469999999999999999999999999999987
Q ss_pred cCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCC----CeEEEEecCCcEEEEecCCccCcceeecccCC
Q 003356 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN----KHMLLGLSDGSLYSISWKGEFYGAFELVHSSN 174 (827)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~----~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~ 174 (827)
+... . +..++..|.++..-+ ..|+.|+.|.+++. ||........
T Consensus 104 ~Q~~-~-----------------------v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKf--WD~R~~~pv~------ 151 (347)
T KOG0647|consen 104 GQVS-Q-----------------------VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKF--WDTRSSNPVA------ 151 (347)
T ss_pred CCee-e-----------------------eeecccceeEEEEecCCCcceeEecccccceee--cccCCCCeee------
Confidence 6421 1 223344444443332 34688889999987 5532211110
Q ss_pred CCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceec
Q 003356 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL 254 (827)
Q Consensus 175 ~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~ 254 (827)
..-.+++.+..++. ...+++.+.+..+++..-.......-....+-+
T Consensus 152 ---------------------------t~~LPeRvYa~Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~SpLk-- 198 (347)
T KOG0647|consen 152 ---------------------------TLQLPERVYAADVL----YPMAVVATAERHIAVYNLENPPTEFKRIESPLK-- 198 (347)
T ss_pred ---------------------------eeeccceeeehhcc----CceeEEEecCCcEEEEEcCCCcchhhhhcCccc--
Confidence 00112222222221 123344444444444332221111100011100
Q ss_pred CCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCC-cceEEEEeecCCCCC-CCCCCeEEEEECCCCCEEEEEEcCCcEE
Q 003356 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWGYSM-DDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 255 ~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~-~~~~~l~~~~~~~~~-~h~~~V~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
-..-|++..+|.+..|.|+-.|.+.+..++... ..-.+++.+.-.-.. +.--+|++|+|+|.-..|++++.||+..
T Consensus 199 --~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 199 --WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFS 276 (347)
T ss_pred --ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEE
Confidence 112247888888888999999999999998721 222345552211110 1134688999999888999999999999
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 333 vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+||-.....+.+.+.+ ..+|++..|+.+|
T Consensus 277 FWDkdar~kLk~s~~~-~qpItcc~fn~~G 305 (347)
T KOG0647|consen 277 FWDKDARTKLKTSETH-PQPITCCSFNRNG 305 (347)
T ss_pred EecchhhhhhhccCcC-CCccceeEecCCC
Confidence 9999877666665555 5678999998887
No 132
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.64 E-value=2.5e-15 Score=151.50 Aligned_cols=250 Identities=16% Similarity=0.167 Sum_probs=175.2
Q ss_pred cCCCCcEE-EEEcCCC-CEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 254 LGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~-~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
.||.+.|. +|=+|.. ..+|+|+.||.|++||+.. ..+.++++. |.|.|+.++++. ..++++++|++|
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f~A--------H~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTFKA--------HEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhh-hhhhheeec--------ccCceeeEEecc--cceEEecCCcce
Confidence 57888887 8999987 8999999999999999988 788889998 999999999988 788899999999
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc-eeEEEccCCceEEEEecCCcceEEEEec----ceeee
Q 003356 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCL 406 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~ 406 (827)
+.|.+.+. ...++.+. +.+..+.-+..+ ..+++++ .+-+||..-...+..+.-..+.|.+++| ...++
T Consensus 132 K~wk~~~~-p~~tilg~--s~~~gIdh~~~~----~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTILGK--SVYLGIDHHRKN----SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred eeeeccCC-cceeeecc--cccccccccccc----ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 99998874 55555432 223333222222 4555555 7889998766666655545556655555 34567
Q ss_pred ecccCCCeeeeEEEEcCCeEEEEecCCCCcceE---------------------EEeeec-eeeccCCCcEEEEEEcCCC
Q 003356 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI---------------------LHLNLP-VSYISQNWPVQHVAASKDG 464 (827)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w---------------------~~~~~p-~~~~~~~~~I~~va~SpdG 464 (827)
+++.|+++.++|+.++..---+.-+.-++...| ..++-| ..+.+|...|.++.|||.|
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred eeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc
Confidence 777999999999877543211111111111222 111222 3577899999999999999
Q ss_pred CEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEE-EEEEEEeCC--EEEEEEEeeCCCcEEEEEeeCC
Q 003356 465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-SKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 465 ~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~-v~gl~W~~~--~li~~~~~~~~~~~~lrly~~~ 529 (827)
+-+++||-|.+| ||.+..+.-+ +.-+..-++ |.++.|..| ++++| +++..+|+|.-.
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SR---diYhtkRMq~V~~Vk~S~Dskyi~SG-----Sdd~nvRlWka~ 345 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSR---DIYHTKRMQHVFCVKYSMDSKYIISG-----SDDGNVRLWKAK 345 (433)
T ss_pred chhccccccceEEEeecCCCcch---hhhhHhhhheeeEEEEeccccEEEec-----CCCcceeeeecc
Confidence 999999999999 9999876532 112223333 778899744 66655 344678999764
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=3.1e-16 Score=170.54 Aligned_cols=234 Identities=18% Similarity=0.230 Sum_probs=189.5
Q ss_pred ccccceeeccceecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCC
Q 003356 241 GLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (827)
Q Consensus 241 ~~~~~~~~~~~~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg 319 (827)
.+++|+.... ..|..++. +.+-..++.+++|+.|-.+-+|.+.. -..+..+.+ |.++|.|+.|+++.
T Consensus 15 ~Lr~~~~~~~---~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k-p~~i~S~~~--------hespIeSl~f~~~E 82 (825)
T KOG0267|consen 15 KLRVWDTREF---VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK-PNAITSLTG--------HESPIESLTFDTSE 82 (825)
T ss_pred ccccccchhh---hhhhhhhceeeeeccceeeccCCCceeeccccccC-Cchhheeec--------cCCcceeeecCcch
Confidence 3456665432 45666664 55555789999999999999999876 444445667 99999999999999
Q ss_pred CEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceE
Q 003356 320 SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV 396 (827)
Q Consensus 320 ~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v 396 (827)
.+|++|..||+|++||+..++.+++|.+| ...+.++.|+|.+ ++.++|+ ...+||.....+.....+|...+
T Consensus 83 ~LlaagsasgtiK~wDleeAk~vrtLtgh-~~~~~sv~f~P~~----~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv 157 (825)
T KOG0267|consen 83 RLLAAGSASGTIKVWDLEEAKIVRTLTGH-LLNITSVDFHPYG----EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV 157 (825)
T ss_pred hhhcccccCCceeeeehhhhhhhhhhhcc-ccCcceeeeccce----EEeccccccccceehhhhccCceeeecCCccee
Confidence 99999999999999999999999999998 7789999999999 8888887 67899998777888877777655
Q ss_pred --EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCC
Q 003356 397 --LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (827)
Q Consensus 397 --~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~d 473 (827)
..|++ |+..++++.|.++++|++..++- ...|..|..++.++.|+|..-.++.||.|
T Consensus 158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~--------------------~~ef~~~e~~v~sle~hp~e~Lla~Gs~d 217 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKL--------------------SKEFKSHEGKVQSLEFHPLEVLLAPGSSD 217 (825)
T ss_pred EEEeecCCCceeeccCCcceeeeeccccccc--------------------ccccccccccccccccCchhhhhccCCCC
Confidence 56666 88999999999999999887765 66788999999999999999999999999
Q ss_pred ceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEE
Q 003356 474 GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNY 514 (827)
Q Consensus 474 g~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~ 514 (827)
+++ +||++|- .+.....+| ..-|++..+..+..++.|.
T Consensus 218 ~tv~f~dletf--e~I~s~~~~-~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 218 RTVRFWDLETF--EVISSGKPE-TDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred ceeeeecccee--EEeeccCCc-cCCceeeeecCCceeeecC
Confidence 999 9999753 334443333 2347777887776665533
No 134
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.63 E-value=2.7e-13 Score=145.14 Aligned_cols=274 Identities=11% Similarity=0.080 Sum_probs=166.1
Q ss_pred eEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEE-EEecCcEEEEEEEEecCceeecCCCC
Q 003356 32 GLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIA-VVTSSLYLHIFKVQITEKSIQIGGKQ 109 (827)
Q Consensus 32 ~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~la-v~t~dg~l~l~~v~~~~~~~~~~~~~ 109 (827)
++|++. .++.+.+|+.. ....+..+. ..+....++|+|||+.++ +++.++.|++|++..+......
T Consensus 2 ~~~~s~~~d~~v~~~d~~-t~~~~~~~~-------~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~---- 69 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTA-TLEVTRTFP-------VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL---- 69 (300)
T ss_pred cEEEEecCCCEEEEEECC-CCceEEEEE-------CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec----
Confidence 567776 57899999984 444433332 123356799999999874 5667899999998643211000
Q ss_pred CCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEe-cCCcEEEEecCCccCcceeecccCCCCcccceecccCCC
Q 003356 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (827)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t-~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~ 188 (827)
. . .......++.++++.+++++ .++.+.+|+... .... ..
T Consensus 70 -------------~----~-~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~--~~~~------------~~------- 110 (300)
T TIGR03866 70 -------------P----S-GPDPELFALHPNGKILYIANEDDNLVTVIDIET--RKVL------------AE------- 110 (300)
T ss_pred -------------c----C-CCCccEEEECCCCCEEEEEcCCCCeEEEEECCC--CeEE------------eE-------
Confidence 0 0 11112345677777777665 477777754432 1111 00
Q ss_pred CccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCc-cccceeecccee---cCCCCcEEEEE
Q 003356 189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG-LKLAEFIKIDKE---LGSGDAVCASI 264 (827)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~-~~~~~~~~~~~~---~~h~~~v~va~ 264 (827)
. .....+.. +.+++||+.++++..+.. +..|+....+.. .......+++|
T Consensus 111 -------------~---~~~~~~~~----------~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (300)
T TIGR03866 111 -------------I---PVGVEPEG----------MAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEF 164 (300)
T ss_pred -------------e---eCCCCcce----------EEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEE
Confidence 0 00011122 446777777776665433 334455433221 11223445899
Q ss_pred cCCCCEEEEE-ecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEE-EcCCcEEEEeccCCeeE
Q 003356 265 APEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSGCRLM 342 (827)
Q Consensus 265 sp~~~lla~g-~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg-~~Dg~v~vWs~~~~~l~ 342 (827)
+|++++++++ ..++.|++||+.+ ++.+..+......... .......++|+|||+.++++ ..++.+.+||+.+++..
T Consensus 165 s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~-~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 165 TADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHP-EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL 242 (300)
T ss_pred CCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeeccccccc-ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 9999988654 4699999999987 6655554431100000 01123468999999986554 45678999999988877
Q ss_pred EEeccccccceeeeeecCCCCCCccceeec----ceeEEEccCCceEEEEec
Q 003356 343 STIRQISLSSISSPIVKPNQDCKYEPLMSG----TSMMQWDEYGYRLYAIEE 390 (827)
Q Consensus 343 ~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg----~~i~~W~~~~~~l~~~~~ 390 (827)
..+..+ ..+.+++|+|++ +.++++ ..+++|+..+++++..++
T Consensus 243 ~~~~~~--~~~~~~~~~~~g----~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 243 DYLLVG--QRVWQLAFTPDE----KYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEEEeC--CCcceEEECCCC----CEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 655432 357889999998 666543 279999999988766654
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.62 E-value=1.9e-14 Score=141.38 Aligned_cols=222 Identities=16% Similarity=0.212 Sum_probs=164.5
Q ss_pred CCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCCc-----ceE-EEEeecCCCCCCCCCCeEEEEECC-CCCEEEEE
Q 003356 255 GSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESAS-----LIR-TVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVG 325 (827)
Q Consensus 255 ~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~~-----~~~-~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg 325 (827)
.|.+.|. +.+.+ .|+++.+|+.||.|.|||++.... .+. ..-.-..+...+|.-.|.++-|-| |.-.+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 4666776 77766 589999999999999999976221 111 111011223446899999999999 77788999
Q ss_pred EcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec-
Q 003356 326 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF- 401 (827)
Q Consensus 326 ~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~- 401 (827)
+-|.+++|||+.+-+..-.++.. ..|.+-+++|-. .+...++.|. .+++-|..++..-.++.+|.+.|+++++
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me--~~VYshamSp~a-~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKME--GKVYSHAMSPMA-MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccceEEEeecccceeeEEeecC--ceeehhhcChhh-hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 99999999999998877776653 457777777753 2224455554 8899999999999999999999988777
Q ss_pred ---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-E
Q 003356 402 ---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-L 477 (827)
Q Consensus 402 ---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-i 477 (827)
.-.+++|+.|+++++||+........+..-... .-.++.++-.+|++.+..+||+.||+++++.|.|..+ +
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-----k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-----KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccC-----ccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 235789999999999999876554332221111 0011122345799999999999999999999999999 9
Q ss_pred EEcCCCe
Q 003356 478 YDIRQKK 484 (827)
Q Consensus 478 wd~~t~~ 484 (827)
|+.++|+
T Consensus 273 wn~~~G~ 279 (397)
T KOG4283|consen 273 WNMESGR 279 (397)
T ss_pred eecccCc
Confidence 9999886
No 136
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.62 E-value=2.8e-15 Score=151.20 Aligned_cols=271 Identities=10% Similarity=0.083 Sum_probs=181.4
Q ss_pred CcccEEEEcCCc-cEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEE
Q 003356 68 GENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (827)
Q Consensus 68 G~~~~v~wSPDg-~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~ll 146 (827)
.++.+++=.|.. +.+|+|+.||.|++||+..- .....++.+.+.|.++..+.+.++
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-----------------------~~~~~f~AH~G~V~Gi~v~~~~~~ 123 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR-----------------------ECIRTFKAHEGLVRGICVTQTSFF 123 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhhh-----------------------hhhheeecccCceeeEEecccceE
Confidence 345567777877 78999999999999999632 222335667778888888889999
Q ss_pred EEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEE
Q 003356 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (827)
Q Consensus 147 v~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (827)
.+++|.+++.|..++.....+.. .......-....++.+++. +..+.+|......++.+|.|-.+.-..+-+
T Consensus 124 tvgdDKtvK~wk~~~~p~~tilg-----~s~~~gIdh~~~~~~FaTc---Ge~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGPPLHTILG-----KSVYLGIDHHRKNSVFATC---GEQIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred EecCCcceeeeeccCCcceeeec-----ccccccccccccccccccc---CceeeecccccCCccceeecCCCceeEEec
Confidence 99999999997766642221110 0000111111112222222 234556666677788888887776566666
Q ss_pred EeCC-cEEEEeeccCccccceeeccceecC--CCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCC
Q 003356 227 YSNG-QLMSCSVSKKGLKLAEFIKIDKELG--SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (827)
Q Consensus 227 s~dG-~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~ 302 (827)
.|-. .+++++..|.++-++|......+.. ..-.+. ++|||.+--+.+|.+|..+..||+..-...+....+
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d----- 270 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD----- 270 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcc-----
Confidence 6654 4666666888888888876654411 112233 899998888999999999999999874556666666
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEc
Q 003356 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (827)
Q Consensus 303 ~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~ 379 (827)
|..+|.+++|||-|+-+++|+.|.+|+|+.+..+..--....--...|.++.||.|. ..+++|+ .+++|.
T Consensus 271 ---hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds----kyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 271 ---HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS----KYIISGSDDGNVRLWK 343 (433)
T ss_pred ---cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc----cEEEecCCCcceeeee
Confidence 999999999999999999999999999999977642111110001235666666665 5555554 455554
Q ss_pred cC
Q 003356 380 EY 381 (827)
Q Consensus 380 ~~ 381 (827)
..
T Consensus 344 a~ 345 (433)
T KOG0268|consen 344 AK 345 (433)
T ss_pred cc
Confidence 43
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=5.2e-14 Score=146.74 Aligned_cols=226 Identities=17% Similarity=0.214 Sum_probs=162.4
Q ss_pred Cccccceeeccceec---CCCCcE-EEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEE
Q 003356 240 KGLKLAEFIKIDKEL---GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (827)
Q Consensus 240 ~~~~~~~~~~~~~~~---~h~~~v-~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~ 315 (827)
..+.+|......... -..+.+ |++-+|.|.+|+.|+..|.+++|.+.+ +.++..+.. |-.+|+|+.|
T Consensus 61 p~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~a--------HYQ~ITcL~f 131 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSA--------HYQSITCLKF 131 (476)
T ss_pred ccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHh--------hccceeEEEE
Confidence 345567655433221 112334 488899999999999999999999999 888888877 9999999999
Q ss_pred CCCCCEEEEEEcCCcEEEEecc---------CCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCc
Q 003356 316 TPDNSAFAVGWKSRGLTVWSVS---------GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY 383 (827)
Q Consensus 316 spDg~~Lasg~~Dg~v~vWs~~---------~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~ 383 (827)
+-||.+|++|+.||.|.+|++. .-+.++.+.+| +-+|+.+...+.+ ....+.+.+ ++++|+...+
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-tlsITDl~ig~Gg--~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH-TLSITDLQIGSGG--TNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC-cceeEEEEecCCC--ccceEEEecCCceEEEEEeccc
Confidence 9999999999999999999873 23456677777 5678888776654 124455555 8999999999
Q ss_pred eEEEEecC-CcceEEEEec-ceeeeecccCCCeeeeEEEEcCC---eEEEEecCCCCcceEEEeeeceeeccCCC--cEE
Q 003356 384 RLYAIEEG-SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGED---RLLVVQSEDTDELKILHLNLPVSYISQNW--PVQ 456 (827)
Q Consensus 384 ~l~~~~~~-~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~---~~~~~~~~d~~~~~w~~~~~p~~~~~~~~--~I~ 456 (827)
.++....- ..-.-+++++ .+.+..|+.+|.+.+-++.+... .+. .++.+ -+..+ ...+.+|.. +|+
T Consensus 209 ~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~-~k~~~-----~~~t~-~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 209 VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN-QKGRH-----EENTQ-INVLVGHENESAIT 281 (476)
T ss_pred eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccc-ccccc-----cccce-eeeeccccCCccee
Confidence 98876532 2222366777 56666788888776655443321 000 00000 00111 235678877 999
Q ss_pred EEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 457 HVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 457 ~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
|+++|-||..|++|+.||.+ +||+.+++
T Consensus 282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred EEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 99999999999999999999 99998875
No 138
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=2e-13 Score=135.70 Aligned_cols=271 Identities=15% Similarity=0.132 Sum_probs=173.8
Q ss_pred CcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEee-cCCCeEE
Q 003356 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-SDNKHML 146 (827)
Q Consensus 68 G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~-~d~~~ll 146 (827)
..+.++.|+|.++.|++++-||+|++|++..... +.. +. +..++.+++ .|...++
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l---------------------~~~--~~-~~~plL~c~F~d~~~~~ 69 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL---------------------KLK--FK-HGAPLLDCAFADESTIV 69 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhh---------------------hhh--ee-cCCceeeeeccCCceEE
Confidence 4567899999999999999999999999975421 111 11 123444443 3446899
Q ss_pred EEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEE
Q 003356 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (827)
Q Consensus 147 v~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (827)
+|+-||.|++++........ +..+...+.+|++.+.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~-------------------------------------igth~~~i~ci~~~~~------- 105 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ-------------------------------------IGTHDEGIRCIEYSYE------- 105 (323)
T ss_pred EeccCceEEEEEecCCccee-------------------------------------eccCCCceEEEEeecc-------
Confidence 99999999998776433211 1234566888875533
Q ss_pred EeCCcEEEEeeccCccccceeecccee--cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCC
Q 003356 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (827)
Q Consensus 227 s~dG~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~ 304 (827)
-..+++++-|.++++||....... ....+.|. +.+-.+..|++|+.|..|.+||+.......+ ....
T Consensus 106 ---~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy-~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q-~reS------ 174 (323)
T KOG1036|consen 106 ---VGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVY-CMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQ-RRES------ 174 (323)
T ss_pred ---CCeEEEcccCccEEEEeccccccccccccCceEE-EEeccCCEEEEeecCceEEEEEcccccchhh-hccc------
Confidence 334566788899999998753222 12233342 3334688999999999999999987333221 1110
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeE----EEeccccccceeeeeecCCCCCCccceeecceeEEEcc
Q 003356 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM----STIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380 (827)
Q Consensus 305 ~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~----~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~ 380 (827)
.-.-.++|++.-|++.-.|+++-||.|.+=.+...... ..++-|- . . .
T Consensus 175 ~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr-----------~--------~---------~ 226 (323)
T KOG1036|consen 175 SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR-----------L--------S---------E 226 (323)
T ss_pred cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee-----------c--------c---------c
Confidence 13456899999999998999999998887655443111 1111110 0 0 0
Q ss_pred CCceEEEEecCCcceE--EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEE
Q 003356 381 YGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (827)
Q Consensus 381 ~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~ 457 (827)
++.+++. .| ++|++ -+.++||+.||.+.+|++..... ...+..-...|.+
T Consensus 227 ~~~~~~y-------PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr--------------------l~q~~~~~~SI~s 279 (323)
T KOG1036|consen 227 KDTEIIY-------PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR--------------------LKQLAKYETSISS 279 (323)
T ss_pred CCceEEE-------EeceeEeccccceEEecCCCceEEEccCcchhh--------------------hhhccCCCCceEE
Confidence 0111111 23 33444 56799999999999999755433 2223333456999
Q ss_pred EEEcCCCCEEEEEeC
Q 003356 458 VAASKDGMFLAVAGL 472 (827)
Q Consensus 458 va~SpdG~~lavag~ 472 (827)
++|+.||..||+|+.
T Consensus 280 lsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 280 LSFSMDGSLLAIASS 294 (323)
T ss_pred EEeccCCCeEEEEec
Confidence 999999999999985
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.61 E-value=3.3e-13 Score=144.51 Aligned_cols=224 Identities=13% Similarity=0.166 Sum_probs=148.5
Q ss_pred EEEEeCCcEE-EEeeccCccccceeecccee---cCCCCcEEEEEcCCCCEEEEE-ecCCeEEEEEcCCCCcceEEEEee
Q 003356 224 FVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLY 298 (827)
Q Consensus 224 ~~~s~dG~~~-~~~~~~~~~~~~~~~~~~~~---~~h~~~v~va~sp~~~lla~g-~~dg~v~vw~~~~~~~~~~~l~~~ 298 (827)
+.+++||+.+ +++..++.+.+|+...++.. ..+.....++++|+++.++++ +.|+++++||+.+ .+.+..+..
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~- 113 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIPV- 113 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC-
Confidence 4467888755 45556777888887655432 233444458999999977654 5689999999987 555555442
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEEcCC-cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce-eec---c
Q 003356 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSG---T 373 (827)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg-~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l-~sg---~ 373 (827)
...+.+++|+|||..++++..++ .+.+|+..++.....+... ....+++|+|++ ..+ +++ .
T Consensus 114 --------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~ 179 (300)
T TIGR03866 114 --------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD--QRPRFAEFTADG----KELWVSSEIGG 179 (300)
T ss_pred --------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--CCccEEEECCCC----CEEEEEcCCCC
Confidence 23468899999999999998865 4677899888776554332 235678899998 655 333 2
Q ss_pred eeEEEccCCceEEEEecCC-----cceE----EEEec-cee-eeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEe
Q 003356 374 SMMQWDEYGYRLYAIEEGS-----SERV----LIFSF-GKC-CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (827)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~-----~~~v----~~~~~-~~~-~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~ 442 (827)
.+.+|+..+++....+..+ ...+ ..+++ ++. +++.+.++.+.+|++..+..
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~------------------ 241 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV------------------ 241 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE------------------
Confidence 7899999988776544311 1111 33444 444 33344455677776532221
Q ss_pred eeceeeccCCCcEEEEEEcCCCCEEEEE-eCCceE-EEEcCCCe
Q 003356 443 NLPVSYISQNWPVQHVAASKDGMFLAVA-GLHGLI-LYDIRQKK 484 (827)
Q Consensus 443 ~~p~~~~~~~~~I~~va~SpdG~~lava-g~dg~i-iwd~~t~~ 484 (827)
.....+...+.+++|+|+|++|+++ +.+|.+ +||+.+++
T Consensus 242 ---~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 242 ---LDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred ---EEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 0111223368899999999999987 468899 99999876
No 140
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=2.1e-13 Score=135.51 Aligned_cols=262 Identities=13% Similarity=0.150 Sum_probs=177.5
Q ss_pred eEEEEEecceEEEE-EccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 003356 23 QIIYFKVNNGLLLI-ASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (827)
Q Consensus 23 ~vv~fspdg~lla~-~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~ 101 (827)
.-+.|+|.++.|++ .=|+++++|+++ ..... ..+.+.++..+.+|.++ ..+++++-||.|+.||+.++..
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~-~~~l~-------~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVP-ANSLK-------LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEecc-chhhh-------hheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc
Confidence 34789988775544 459999999996 22111 12345688999999985 5788999999999999986553
Q ss_pred eeecCCCCCCCceeeeEeeEeecccccccccceEEEeecC--CCeEEEEecCCcEEEEecCCccCcceeecccCCCCccc
Q 003356 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (827)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d--~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i 179 (827)
.+ +..+...+.|+... ...+++|+.|+.|+. ||.-.....
T Consensus 88 ~~------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~--wD~R~~~~~------------ 129 (323)
T KOG1036|consen 88 DQ------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKF--WDPRNKVVV------------ 129 (323)
T ss_pred ee------------------------eccCCCceEEEEeeccCCeEEEcccCccEEE--Eeccccccc------------
Confidence 21 23344456666444 577899999999998 553321100
Q ss_pred ceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee-----c
Q 003356 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----L 254 (827)
Q Consensus 180 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-----~ 254 (827)
........|.+| +..|..++++..+..+..||+...... .
T Consensus 130 -----------------------~~~d~~kkVy~~------------~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS 174 (323)
T KOG1036|consen 130 -----------------------GTFDQGKKVYCM------------DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRES 174 (323)
T ss_pred -----------------------cccccCceEEEE------------eccCCEEEEeecCceEEEEEcccccchhhhccc
Confidence 001111134443 356777788778878888887754322 1
Q ss_pred CCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCC----cceEEEEeecCCC-CCCCCCCeEEEEECCCCCEEEEEEcC
Q 003356 255 GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGWKS 328 (827)
Q Consensus 255 ~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~----~~~~~l~~~~~~~-~~~h~~~V~~l~~spDg~~Lasg~~D 328 (827)
.-.-.++ ++..|.+.=.|+++-||.|.+=.+++ . +....++.+.... ...---||++|+|+|--..||+|+.|
T Consensus 175 ~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~-s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD 253 (323)
T KOG1036|consen 175 SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDD-SEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD 253 (323)
T ss_pred cceeEEEEEEEecCCCceEEEeecceEEEEccCC-chHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence 1122344 88889999999999999998876665 3 2233444421110 00112379999999998899999999
Q ss_pred CcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeec
Q 003356 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (827)
Q Consensus 329 g~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg 372 (827)
|.|.+||.+..+.++.+... ..+|.+++|+-+| ..++.+
T Consensus 254 G~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG----~~LAia 292 (323)
T KOG1036|consen 254 GIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDG----SLLAIA 292 (323)
T ss_pred ceEEEccCcchhhhhhccCC-CCceEEEEeccCC----CeEEEE
Confidence 99999999999888888766 5679999999988 666533
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=1e-14 Score=160.04 Aligned_cols=196 Identities=14% Similarity=0.207 Sum_probs=143.2
Q ss_pred EEEcC-CCCEEEEEecCCeEEEEEcCCCC--cceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEecc
Q 003356 262 ASIAP-EQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 262 va~sp-~~~lla~g~~dg~v~vw~~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~ 337 (827)
|.|+. +.++||+++.+|.|.+||+.... ..+..+.. |...|+++.|++ ..++|++|+.||+|++||+.
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E--------H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR 164 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE--------HERSANKLDFHSTEPNILISGSQDGTVKCWDLR 164 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCccccchhhhHhhh--------hccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence 66663 57899999999999999997622 23335555 999999999998 67899999999999999998
Q ss_pred CCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeee
Q 003356 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYAR 417 (827)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w 417 (827)
...-..++.+. ..+|..+.|+|.. +..++++...|.++.|
T Consensus 165 ~~~S~~t~~~n-SESiRDV~fsp~~---------------------------------------~~~F~s~~dsG~lqlW 204 (839)
T KOG0269|consen 165 SKKSKSTFRSN-SESIRDVKFSPGY---------------------------------------GNKFASIHDSGYLQLW 204 (839)
T ss_pred ccccccccccc-chhhhceeeccCC---------------------------------------CceEEEecCCceEEEe
Confidence 77655555443 2334444444331 3345677778889999
Q ss_pred EEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEE
Q 003356 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQK 496 (827)
Q Consensus 418 ~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~ 496 (827)
|+.+.+. +...+.+|++||.++.|+|++.+||+||+|+.+ +||+.+++-+.. ...+.-
T Consensus 205 DlRqp~r-------------------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~--~tInTi 263 (839)
T KOG0269|consen 205 DLRQPDR-------------------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK--HTINTI 263 (839)
T ss_pred eccCchh-------------------HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce--eEEeec
Confidence 9988766 245678999999999999999999999999999 999988763321 111121
Q ss_pred EEEEEEEEeC---CEEEEEEEeeCCCcEEEEEeeCC
Q 003356 497 IQSKGLLWLG---KIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 497 ~~v~gl~W~~---~~li~~~~~~~~~~~~lrly~~~ 529 (827)
..|..+.|-. +.|..|+. ..++++++|..-
T Consensus 264 apv~rVkWRP~~~~hLAtcsm---v~dtsV~VWDvr 296 (839)
T KOG0269|consen 264 APVGRVKWRPARSYHLATCSM---VVDTSVHVWDVR 296 (839)
T ss_pred ceeeeeeeccCccchhhhhhc---cccceEEEEeec
Confidence 2356799963 34444433 355889999774
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.58 E-value=2.5e-13 Score=135.67 Aligned_cols=220 Identities=12% Similarity=0.163 Sum_probs=151.6
Q ss_pred EEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCCC-CEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCC
Q 003356 232 LMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (827)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~~-~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h 306 (827)
+++++...+-+++.|....+. +.+|..++. +.+.|+. +++.+|+.|.+||+|++++ ..++..+.+. .+|
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~-~~Cv~VfGG~-----egH 180 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT-DVCVAVFGGV-----EGH 180 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC-CeEEEEeccc-----ccc
Confidence 444445566677777776543 378999999 9999975 7999999999999999998 7888777652 259
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec---------------------------cccccceeeeeec
Q 003356 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR---------------------------QISLSSISSPIVK 359 (827)
Q Consensus 307 ~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~---------------------------~~~~~~v~s~~~s 359 (827)
.+.|.++.|++||.+||+++.|..+++|++...+....++ ..+.+.|.++.|-
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 9999999999999999999999999999997432111110 0012222232221
Q ss_pred CCCCCCccceeecc---eeEEEccCCce-E-------------EEEecCCcceEE----EEec-ceeeeecccCCCeeee
Q 003356 360 PNQDCKYEPLMSGT---SMMQWDEYGYR-L-------------YAIEEGSSERVL----IFSF-GKCCLNRGVSGMTYAR 417 (827)
Q Consensus 360 p~~~~~~~~l~sg~---~i~~W~~~~~~-l-------------~~~~~~~~~~v~----~~~~-~~~~~s~~~d~~~~~w 417 (827)
- +.+++.+ .+..|.++..+ - +..+.-....+| +|++ .+.++.|+..|.+.+|
T Consensus 261 g------d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 261 G------DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred h------hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 1 3344433 78899884321 1 111111222343 3333 8899999999999999
Q ss_pred EEEEcCCeEEEEecCCCCcceEEEeeeceeec--cCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcC
Q 003356 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYI--SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (827)
Q Consensus 418 ~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~--~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~ 481 (827)
++...+... -.++. .....|+..+||.||..|+....||++ -||..
T Consensus 335 dL~~~ep~~------------------~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 335 DLDNNEPPK------------------CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ECCCCCCcc------------------CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 987765510 11121 123469999999999999999999999 99864
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.58 E-value=1.7e-13 Score=134.73 Aligned_cols=292 Identities=16% Similarity=0.185 Sum_probs=179.5
Q ss_pred ccceEEEeecC---CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCC
Q 003356 131 KGLSVSNIVSD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (827)
Q Consensus 131 ~~~~v~~~~~d---~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 207 (827)
+.++|.++..| +.+|+.|..||.+.+|+.......+.+. .-+...|+-. +..-..+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~--li~k~~c~v~-------------------~~h~~~H 100 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG--LIAKHKCIVA-------------------KQHENGH 100 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc--ceeheeeecc-------------------ccCCccc
Confidence 34566666555 4689999999999987665433211110 0000001100 0112345
Q ss_pred cccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee--cCCCCcEE-EEEcC---CCCEEEEEecCCeEE
Q 003356 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAP---EQQILAVGTRRGVVE 281 (827)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~-va~sp---~~~lla~g~~dg~v~ 281 (827)
+..|.++.|.|. |--.+.+++-|.++|+||..+.+.. ..-++.|. -++|| ...+||+|..|-+|+
T Consensus 101 ky~iss~~WyP~---------DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~Vr 171 (397)
T KOG4283|consen 101 KYAISSAIWYPI---------DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVR 171 (397)
T ss_pred eeeeeeeEEeee---------cCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEE
Confidence 566666665543 3344556677899999998876543 11234444 56666 467999999999999
Q ss_pred EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCC-EEEEEEcCCcEEEEeccCC-eeEEEecccc----------
Q 003356 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGC-RLMSTIRQIS---------- 349 (827)
Q Consensus 282 vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~-~Lasg~~Dg~v~vWs~~~~-~l~~tl~~~~---------- 349 (827)
+.|+.. +...+++++ |.+.|.++.|||... .||+|+.||.|++||+... -++.++..|.
T Consensus 172 LCDi~S-Gs~sH~LsG--------Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n 242 (397)
T KOG4283|consen 172 LCDIAS-GSFSHTLSG--------HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTN 242 (397)
T ss_pred EEeccC-Ccceeeecc--------ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccc
Confidence 999999 899999999 999999999999655 7899999999999999643 3555555442
Q ss_pred ---ccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecC---CcceEEEEecceeeeecccCCCeeeeEEE
Q 003356 350 ---LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG---SSERVLIFSFGKCCLNRGVSGMTYARQVI 420 (827)
Q Consensus 350 ---~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~---~~~~v~~~~~~~~~~s~~~d~~~~~w~~~ 420 (827)
.+.|+.++|+.++ ..+++.. .++.|+...++--...-+ |.... .+.+ . +. +.+..+ +.+.
T Consensus 243 ~ah~gkvngla~tSd~----~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-~~~~--~-~~-~~~s~v--fv~~ 311 (397)
T KOG4283|consen 243 TAHYGKVNGLAWTSDA----RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-SFAV--H-IQ-SMDSDV--FVLF 311 (397)
T ss_pred ccccceeeeeeecccc----hhhhhccCccceEEeecccCcccccccccccccccc-cceE--E-Ee-ecccce--EEEE
Confidence 3457777777776 5444433 778888776553211111 11111 0000 0 11 111111 1122
Q ss_pred EcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 421 ~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
..++.++++.-.+.+ ....+..|...|.+.++-|+=+...+|..|+.+ .|.+
T Consensus 312 p~~~~lall~~~sgs--------~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 312 PNDGSLALLNLLEGS--------FVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ecCCeEEEEEccCce--------EEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 222333333322211 133455677779999999999999999999999 8876
No 144
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.57 E-value=1.1e-13 Score=144.31 Aligned_cols=260 Identities=12% Similarity=0.142 Sum_probs=180.6
Q ss_pred CcccEEEEEEcCCc-ceEEEEEeCCcEEEEeeccCccccc-e-eecc-ceecCCCC-cEEEEEcCC-CCEEEEEecCCeE
Q 003356 207 ISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLA-E-FIKI-DKELGSGD-AVCASIAPE-QQILAVGTRRGVV 280 (827)
Q Consensus 207 ~~~~i~~i~~~~~~-~~~~~~s~dG~~~~~~~~~~~~~~~-~-~~~~-~~~~~h~~-~v~va~sp~-~~lla~g~~dg~v 280 (827)
+.+.|..+.|-|+. +.++.-++.|.+++.......-+.- . .-.+ -.+.||.+ ..-++||+. .-.+++|+.|++|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 44556666666655 3444456777777765543221110 0 0011 13478887 444899985 4478899999999
Q ss_pred EEEEcCCCCcc------eEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEecc--CCeeEEEecccccc
Q 003356 281 ELYDLAESASL------IRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVS--GCRLMSTIRQISLS 351 (827)
Q Consensus 281 ~vw~~~~~~~~------~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~--~~~l~~tl~~~~~~ 351 (827)
++||+...... ...+.+ |...|..++|+| +..++++.++|+.+.|||+. ..+...+...| ..
T Consensus 203 ~lwdi~~~~~~~~~~~p~~~~~~--------h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah-~~ 273 (422)
T KOG0264|consen 203 CLWDINAESKEDKVVDPKTIFSG--------HEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH-SA 273 (422)
T ss_pred EEEeccccccCCccccceEEeec--------CCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc-CC
Confidence 99999874331 223444 999999999999 66789999999999999998 44555556666 78
Q ss_pred ceeeeeecCCCCCCccceeecc---eeEEEccCCc-eEEEEecCCcceEEEEec----ceeeeecccCCCeeeeEEEEcC
Q 003356 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGE 423 (827)
Q Consensus 352 ~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~-~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~ 423 (827)
.+++++|+|-++ ..+++|+ ++.+||.++- +.+.++.+|...|+++.+ ...+++.+.|+.+.+||+.+-.
T Consensus 274 ~vn~~~fnp~~~---~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 274 EVNCVAFNPFNE---FILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred ceeEEEeCCCCC---ceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 899999999872 5677877 8999999873 457788899999966655 5678899999999999987644
Q ss_pred CeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCC-EEEEEeCCceE-EEEcCCCe
Q 003356 424 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 424 ~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~-~lavag~dg~i-iwd~~t~~ 484 (827)
.....-.+.+.+ ..+...--||...|...+|+|+.. .|+++..|+.+ ||.+...-
T Consensus 351 ~eq~~eda~dgp------pEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 351 EEQSPEDAEDGP------PELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENI 407 (422)
T ss_pred cccChhhhccCC------cceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccc
Confidence 421100000100 001112247889999999999976 56788999999 99987543
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.9e-13 Score=133.23 Aligned_cols=270 Identities=14% Similarity=0.188 Sum_probs=156.6
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCC--ccEEEEEecCcEEEEEEEEe
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD--TKLIAVVTSSLYLHIFKVQI 98 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPD--g~~lav~t~dg~l~l~~v~~ 98 (827)
...|.|.+.|+.+|++ +|.++.||+.+++.. ...++.+=-.+.|.+..|.|.|- |+.+|+++.|+++.||.=+.
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~ 92 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQE 92 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCC---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecc
Confidence 3457899999999999 688999999654432 22222211124588899999754 79999999999999998542
Q ss_pred cCceeecCCCCCCCceeeeEeeEeecccccccccceEEE--eecCC--CeEEEEecCCcEEEEecCCccCcc-eeecccC
Q 003356 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDN--KHMLLGLSDGSLYSISWKGEFYGA-FELVHSS 173 (827)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d~--~~llv~t~dg~i~~~~w~~~~~~~-~~l~~~p 173 (827)
.+. ..+. ..|.. ...+......|+. |++.. -.|++++.||.+++|.--...+.. -.+ .
T Consensus 93 ~~~----~~~~----~~Wv~------~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L---q 155 (361)
T KOG2445|consen 93 KSE----EAHG----RRWVR------RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL---Q 155 (361)
T ss_pred ccc----cccc----ceeEE------EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh---h
Confidence 111 0000 11211 1112222334433 34433 457778899999987432221111 000 0
Q ss_pred CCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCc--ceEEEEEeCC------cEEEEeeccCccccc
Q 003356 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM--RLLFVLYSNG------QLMSCSVSKKGLKLA 245 (827)
Q Consensus 174 ~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~~~~s~dG------~~~~~~~~~~~~~~~ 245 (827)
+..+.+ + .+.........++.|++.. ...+++..|. +.++...++..-| |
T Consensus 156 ~Ei~~~---~------------------~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-w 213 (361)
T KOG2445|consen 156 HEIQNV---I------------------DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-W 213 (361)
T ss_pred hhhhhc---c------------------CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-e
Confidence 000000 0 0111122334455555432 2233444443 3333333222211 2
Q ss_pred eeeccceecCCCCcEE-EEEcCC----CCEEEEEecCCeEEEEEcCCC-----------CcceEEEEeecCCCCCCCCCC
Q 003356 246 EFIKIDKELGSGDAVC-ASIAPE----QQILAVGTRRGVVELYDLAES-----------ASLIRTVSLYDWGYSMDDTGP 309 (827)
Q Consensus 246 ~~~~~~~~~~h~~~v~-va~sp~----~~lla~g~~dg~v~vw~~~~~-----------~~~~~~l~~~~~~~~~~h~~~ 309 (827)
... ..+.+|.++++ ++|.|. ..+||+++.|| |+||++... ......+.......-.+|.++
T Consensus 214 ~kv--a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~ 290 (361)
T KOG2445|consen 214 LKV--AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE 290 (361)
T ss_pred eee--hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc
Confidence 211 12368999999 999995 67999999999 999999731 111112222222223469999
Q ss_pred eEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 310 VSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 310 V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
|+.++|.--|..|++.+.||.||+|..
T Consensus 291 VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 291 VWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eEEEEEeeeeeEEeecCCCceeeehhh
Confidence 999999999999999999999999975
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.55 E-value=1.9e-13 Score=142.89 Aligned_cols=214 Identities=17% Similarity=0.211 Sum_probs=161.4
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 257 ~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
..+.|++......++++|+..++|+|||+.. ..+.+.++. |+..|+++.+.....+||+++.-|.|.|-++
T Consensus 80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lkd--------h~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 80 DNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHRFLKD--------HQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred chHHHHhhhhcceeeeccCcCceeeehhhHH-HHHhhhccC--------CcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 3667766666779999999999999999986 556667777 9999999999999999999999999999999
Q ss_pred cCCeeEEEeccccccceeeeeecCCCCCCcccee-ecc---eeEEEccCCceEEEEe-cCCcceE--EEEec--ceeeee
Q 003356 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT---SMMQWDEYGYRLYAIE-EGSSERV--LIFSF--GKCCLN 407 (827)
Q Consensus 337 ~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~-sg~---~i~~W~~~~~~l~~~~-~~~~~~v--~~~~~--~~~~~s 407 (827)
.++....++.......|.-+.|+|.. ..++ +.+ .+.+||..+......+ +.|.... ++|++ ...+++
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~sk----r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSK----RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred ccCccccceecCCCCeEEEeeccccc----ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE
Confidence 99988777776534567788898876 4333 332 8899999887765544 4455544 77777 667899
Q ss_pred cccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEE
Q 003356 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (827)
Q Consensus 408 ~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~ 486 (827)
.+.|..+.++|...... ..-+.-..|..+++|+++|.+|+.|+.+|.+ .||++..+-.
T Consensus 227 VG~Dkki~~yD~~s~~s---------------------~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQAS---------------------TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred ecccceEEEeecccccc---------------------cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 99999998888653221 1122334588999999999999999999999 9999877633
Q ss_pred eeCCccceEEEEEEEEEEeC
Q 003356 487 VFGDITQEQKIQSKGLLWLG 506 (827)
Q Consensus 487 ~f~~~~~e~~~~v~gl~W~~ 506 (827)
.--. +.++-.|..++|-.
T Consensus 286 v~v~--sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 286 VAVR--SAHDASVTRVAFQP 303 (673)
T ss_pred ceEe--eecccceeEEEeee
Confidence 2111 12222367777753
No 147
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.55 E-value=1.3e-13 Score=136.39 Aligned_cols=268 Identities=12% Similarity=0.123 Sum_probs=184.9
Q ss_pred ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 253 ~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
+.||.+.++ ++.......+++++.|.+-++|.+.+ +.++.+..+ |.|.|++++|+|.|.++++++.|++-
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~G--------H~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTG--------HTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecc--------cccceeeEEeccccceEEEccCCcch
Confidence 368999999 88888888999999999999999999 899999998 99999999999999999999999999
Q ss_pred EEEeccCCeeEEEe---ccccc-cceeeeeecCCCCCCccceeecceeEEEccCCc---eEEEEecCCcceEEEEec---
Q 003356 332 TVWSVSGCRLMSTI---RQISL-SSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGY---RLYAIEEGSSERVLIFSF--- 401 (827)
Q Consensus 332 ~vWs~~~~~l~~tl---~~~~~-~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~---~l~~~~~~~~~~v~~~~~--- 401 (827)
.||...-+-.+-.- .+|.. ..+.. + | +.+...+++ . ..++. -.+..+.+|...|.+.++
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~---s-D---e~~~d~d~~-~---~sD~~tiRvPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEH---S-D---EHNRDTDSS-E---KSDGHTIRVPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhc---c-c---ccccccccc-c---ccCCceeeeeeeeeeccccceEehhhhcC
Confidence 99974221110000 00100 00000 0 0 001111111 0 00111 134556788888888777
Q ss_pred ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
++.+++++.|.+..+||+.+++- ...+.+|....+.++-.|..+.++++++|.+. +||.
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~--------------------v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDF 343 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEV--------------------VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDF 343 (481)
T ss_pred cceeeeeeccccceeeeeccCce--------------------eccccCcchhccccccCCcceEEEEeccCceeEeccc
Confidence 89999999999999999988776 66788999999999999999999999999999 9998
Q ss_pred CCCe--EEeeCCccceEEEEEEEEEEeCC-EEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEecCC--ccEEEEccCCE
Q 003356 481 RQKK--WRVFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA--KPIVMDVYEDY 555 (827)
Q Consensus 481 ~t~~--w~~f~~~~~e~~~~v~gl~W~~~-~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~~--~~~~l~~~~~~ 555 (827)
...- -..| |.+.-+|+...+.-+ .++.+ +++..+++|...+.- .-+.+....+ ..+.++.++..
T Consensus 344 ReaI~sV~VF----QGHtdtVTS~vF~~dd~vVSg-----SDDrTvKvWdLrNMR--splATIRtdS~~NRvavs~g~~i 412 (481)
T KOG0300|consen 344 REAIQSVAVF----QGHTDTVTSVVFNTDDRVVSG-----SDDRTVKVWDLRNMR--SPLATIRTDSPANRVAVSKGHPI 412 (481)
T ss_pred hhhcceeeee----cccccceeEEEEecCCceeec-----CCCceEEEeeecccc--CcceeeecCCccceeEeecCCce
Confidence 6321 1123 323335777777644 44444 334677888664221 1223333333 34556667777
Q ss_pred EEEEEcCceEEEEEEE
Q 003356 556 ILVTYRPFDVHIFHVK 571 (827)
Q Consensus 556 llV~~~~~~i~l~~~~ 571 (827)
+.+-.+|..+++|++.
T Consensus 413 IAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 413 IAIPHDNRQVRLFDLN 428 (481)
T ss_pred EEeccCCceEEEEecC
Confidence 8887778899999864
No 148
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.53 E-value=2e-13 Score=146.20 Aligned_cols=237 Identities=20% Similarity=0.288 Sum_probs=156.8
Q ss_pred CCCEEEE--EecCCeEEEEEcCCCCcceE-EEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeE
Q 003356 267 EQQILAV--GTRRGVVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLM 342 (827)
Q Consensus 267 ~~~lla~--g~~dg~v~vw~~~~~~~~~~-~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~~l~ 342 (827)
+...+|+ .+..|.|.||++...+++-- .+.+.. ....|+.+.|.| |...||++.+||.|++|.+..+-+-
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~ 663 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF------NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP 663 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccc------cCceeeecccCCCChHHeeecccCceEEEEEeccCCCC
Confidence 4556665 45578999999988554321 111100 345699999999 8999999999999999998654221
Q ss_pred EEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEec----ceeeeecccCCCeeeeE
Q 003356 343 STIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQ 418 (827)
Q Consensus 343 ~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~ 418 (827)
. ... ..-..+..|.+.|..+.| +..++++++|.++++||
T Consensus 664 e------------------------~~~-------------tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 664 E------------------------NEM-------------TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred c------------------------ccC-------------CcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 0 000 001122345556655555 67788999999999999
Q ss_pred EEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEE
Q 003356 419 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKI 497 (827)
Q Consensus 419 ~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~ 497 (827)
+..+.. -..+.+|...|..+||||||+.+|+.++||.+ +|+..++.-.+. |...
T Consensus 707 l~~~~~--------------------~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~-----Eg~g 761 (1012)
T KOG1445|consen 707 LANAKL--------------------YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY-----EGKG 761 (1012)
T ss_pred hhhhhh--------------------hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc-----cCCC
Confidence 988877 45788999999999999999999999999999 999988864443 3332
Q ss_pred EE--E--EEEEe--CCEEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEecCCc--cEEEEccCC--EEEEEEcCceEEE
Q 003356 498 QS--K--GLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAK--PIVMDVYED--YILVTYRPFDVHI 567 (827)
Q Consensus 498 ~v--~--gl~W~--~~~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~~~--~~~l~~~~~--~llV~~~~~~i~l 567 (827)
.| + .+.|. ++++|+.+. +...+.++.+|.-+.++.+.+ .+.-+... +++-....| .+++ +..|+-.|
T Consensus 762 pvgtRgARi~wacdgr~viv~Gf-dk~SeRQv~~Y~Aq~l~~~pl-~t~~lDvaps~LvP~YD~Ds~~lfl-tGKGD~~v 838 (1012)
T KOG1445|consen 762 PVGTRGARILWACDGRIVIVVGF-DKSSERQVQMYDAQTLDLRPL-YTQVLDVAPSPLVPHYDYDSNVLFL-TGKGDRFV 838 (1012)
T ss_pred CccCcceeEEEEecCcEEEEecc-cccchhhhhhhhhhhccCCcc-eeeeecccCccccccccCCCceEEE-ecCCCceE
Confidence 22 2 37784 455555444 446678899998875654332 22222222 332233333 3444 55677777
Q ss_pred EEEEEec
Q 003356 568 FHVKLFG 574 (827)
Q Consensus 568 ~~~~~~~ 574 (827)
|-+++..
T Consensus 839 ~~yEv~~ 845 (1012)
T KOG1445|consen 839 NMYEVIY 845 (1012)
T ss_pred EEEEecC
Confidence 6666543
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.9e-12 Score=128.38 Aligned_cols=244 Identities=14% Similarity=0.123 Sum_probs=159.5
Q ss_pred EEeCCcEEEEeeccCccccceeecc-------ceecCCCCcEE-EEEcC-C-CCEEEEEecCCeEEEEEcCCCC------
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKI-------DKELGSGDAVC-ASIAP-E-QQILAVGTRRGVVELYDLAESA------ 289 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~-------~~~~~h~~~v~-va~sp-~-~~lla~g~~dg~v~vw~~~~~~------ 289 (827)
+..-|+.+++++.|.++++|+.... ..|+.|.+.+. +.|.+ . |+.+|+++.|++++||.=....
T Consensus 21 ~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~ 100 (361)
T KOG2445|consen 21 FDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGR 100 (361)
T ss_pred ecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccc
Confidence 5566777787788888888884322 12477888887 87765 3 8999999999999999863211
Q ss_pred cceE--EEEeecCCCCCCCCCCeEEEEECC--CCCEEEEEEcCCcEEEEeccCCeeE------EEec------cccccce
Q 003356 290 SLIR--TVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLM------STIR------QISLSSI 353 (827)
Q Consensus 290 ~~~~--~l~~~~~~~~~~h~~~V~~l~~sp--Dg~~Lasg~~Dg~v~vWs~~~~~l~------~tl~------~~~~~~v 353 (827)
+-++ ++.. ..+.|+.++|.| -|-.||+++.||.+|||....-..+ +.+. +......
T Consensus 101 ~Wv~~ttl~D--------srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~ 172 (361)
T KOG2445|consen 101 RWVRRTTLVD--------SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPC 172 (361)
T ss_pred eeEEEEEeec--------CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcc
Confidence 1122 2222 678899999999 5889999999999999987543211 1111 1112344
Q ss_pred eeeeecCCCCCCccceeecc--------eeEEEccC-CceEE---EEecCCcceEEEEec----c---eeeeecccCCCe
Q 003356 354 SSPIVKPNQDCKYEPLMSGT--------SMMQWDEY-GYRLY---AIEEGSSERVLIFSF----G---KCCLNRGVSGMT 414 (827)
Q Consensus 354 ~s~~~sp~~~~~~~~l~sg~--------~i~~W~~~-~~~l~---~~~~~~~~~v~~~~~----~---~~~~s~~~d~~~ 414 (827)
.++.|+|.. .....++-|+ .+.+|... +++-| ..+.+|...|..++| | ..+++++.|| +
T Consensus 173 ~CvsWn~sr-~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v 250 (361)
T KOG2445|consen 173 FCVSWNPSR-MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-V 250 (361)
T ss_pred eEEeecccc-ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-E
Confidence 566666543 1123444443 45666543 23222 334578888866666 3 3578899999 9
Q ss_pred eeeEEEEcCCeEEEEecCCCCc-ceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 415 YARQVIYGEDRLLVVQSEDTDE-LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 415 ~~w~~~~~~~~~~~~~~~d~~~-~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
++|.+......+ ...+...+. +.--.++....+.+|+++|+.+.|+-.|..|++.|.||.+ +|..
T Consensus 251 ~I~~v~~~~s~i-~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 251 RIFKVKVARSAI-EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred EEEEEeeccchh-hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 999876533322 111111111 1112344456688999999999999999999999999999 9965
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.50 E-value=1.5e-12 Score=135.52 Aligned_cols=278 Identities=13% Similarity=0.119 Sum_probs=171.1
Q ss_pred hcCcccEEEEcCCcc--EEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecC--
Q 003356 66 REGENLQAVWSPDTK--LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-- 141 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~--~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d-- 141 (827)
..|.+++++|+|--. ++|+|...|.|=+|++....+ .....+.+..+.++|.++.+.
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-------------------d~d~v~~f~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-------------------DKDGVYLFTPHSGPVSGLKFSPA 245 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------------ccCceEEeccCCccccceEecCC
Confidence 358889999999875 889999999999999952211 001222234455566665433
Q ss_pred -CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCc
Q 003356 142 -NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM 220 (827)
Q Consensus 142 -~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 220 (827)
...++..+.||+|+..+.++....... +. .....-+.+++
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~----------------s~------------------~~d~~~fs~~d----- 286 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEVL----------------SL------------------DTDNIWFSSLD----- 286 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHHh----------------hc------------------Cccceeeeecc-----
Confidence 367999999999998777654322210 00 00111122333
Q ss_pred ceEEEEEeCCcEEEEeeccCccccceeeccce----ecCCCCcEE-EEEcCCC-CEEEEEecCCeEEEEEcCCCCcceE-
Q 003356 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----ELGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASLIR- 293 (827)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~----~~~h~~~v~-va~sp~~-~lla~g~~dg~v~vw~~~~~~~~~~- 293 (827)
++.+.+.++.+.+-+...+||...... +.-|...++ +++||-. .+||+++.|++.+|||+.. .....
T Consensus 287 -----~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~-l~~K~s 360 (498)
T KOG4328|consen 287 -----FSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ-LRGKAS 360 (498)
T ss_pred -----ccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhh-hcCCCC
Confidence 334444334344433455676654432 345777888 9999965 5899999999999999986 22211
Q ss_pred -EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc----CCeeEEEeccccc--c--ceeeeeecCCCCC
Q 003356 294 -TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS----GCRLMSTIRQISL--S--SISSPIVKPNQDC 364 (827)
Q Consensus 294 -~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~----~~~l~~tl~~~~~--~--~v~s~~~sp~~~~ 364 (827)
.+.. .+|.-+|.+..|||+|-.|++.+.|+.|+|||.. .-...+++..... . ..-..+|.|+.
T Consensus 361 p~lst------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~-- 432 (498)
T KOG4328|consen 361 PFLST------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY-- 432 (498)
T ss_pred cceec------ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc--
Confidence 1222 3499999999999988779999999999999983 2233344432111 0 11223577765
Q ss_pred Cccceeecc---eeEEEccCCceEEEEecCCc----ceEEEEec-ceeeeecc-cCCCeeee
Q 003356 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSS----ERVLIFSF-GKCCLNRG-VSGMTYAR 417 (827)
Q Consensus 365 ~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~----~~v~~~~~-~~~~~s~~-~d~~~~~w 417 (827)
..++.|- .+=+++..+++++..+.+.. ..+..+.+ ...+++|+ ..|.+.+|
T Consensus 433 --~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 433 --NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred --cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 6666554 67788888888776654322 23466666 33244443 44555544
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.49 E-value=6.4e-12 Score=135.49 Aligned_cols=255 Identities=18% Similarity=0.219 Sum_probs=167.9
Q ss_pred eEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCce
Q 003356 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (827)
Q Consensus 23 ~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~ 102 (827)
.-|+|.|||.-|+.+.++++.|+|.+ .+.++.+++. +...+.+++||.||+++|+|++|..|.+|.-.....-
T Consensus 16 ~d~afkPDGsqL~lAAg~rlliyD~n-dG~llqtLKg------HKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAGSRLLVYDTS-DGTLLQPLKG------HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred heeEECCCCceEEEecCCEEEEEeCC-Cccccccccc------ccceEEEEEEccCCceeccCCCceeEEEeccccccee
Confidence 34899999999999999999999997 7777766543 3466789999999999999999999999986532211
Q ss_pred eecCCCCCCCceeeeEeeEeecccccccccceEEEeecCC-CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccce
Q 003356 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (827)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~-~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~ 181 (827)
. . .+...|.|++.++ ...+..++=..+-. |..+...
T Consensus 89 k------------------------Y-SH~D~IQCMsFNP~~h~LasCsLsdFgl--WS~~qK~---------------- 125 (1081)
T KOG1538|consen 89 K------------------------Y-SHNDAIQCMSFNPITHQLASCSLSDFGL--WSPEQKS---------------- 125 (1081)
T ss_pred e------------------------e-ccCCeeeEeecCchHHHhhhcchhhccc--cChhhhh----------------
Confidence 1 1 1223444554444 22222222222222 3322110
Q ss_pred ecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee-----cCC
Q 003356 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGS 256 (827)
Q Consensus 182 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-----~~h 256 (827)
..-......+.+ +.++.||++++.+..++|+.+-+....++. -|.
T Consensus 126 --------------------V~K~kss~R~~~----------CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~ 175 (1081)
T KOG1538|consen 126 --------------------VSKHKSSSRIIC----------CSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGS 175 (1081)
T ss_pred --------------------HHhhhhheeEEE----------eeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCC
Confidence 000001112222 557899999999999998876654322221 245
Q ss_pred CCcEE-EEEcCCC-----CEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCc
Q 003356 257 GDAVC-ASIAPEQ-----QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (827)
Q Consensus 257 ~~~v~-va~sp~~-----~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~ 330 (827)
...+. ++|+|.. ..+|+...+.++..|.++. +.+..-+. -.-.-.|+.+-|+|.++..|+.|+.
T Consensus 176 Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~r~--------L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 176 NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKDRA--------LNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred CCCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeeccccc--------CCCCchhheeccCCcEEEEccCCCc
Confidence 56777 9999963 4778888888888877753 32221111 2233478999999999999999999
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 003356 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 331 v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
++++.-.|- .+-|+.+. ..++++++..|++ +.++-|.
T Consensus 246 L~~fTR~Gv-rLGTvg~~-D~WIWtV~~~PNs----Q~v~~GC 282 (1081)
T KOG1538|consen 246 LSLFTRDGV-RLGTVGEQ-DSWIWTVQAKPNS----QYVVVGC 282 (1081)
T ss_pred eEEEeecCe-EEeecccc-ceeEEEEEEccCC----ceEEEEE
Confidence 999987754 45566554 5789999999998 6665554
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.4e-13 Score=157.95 Aligned_cols=206 Identities=19% Similarity=0.236 Sum_probs=155.0
Q ss_pred cCCCCcEE-EEEcCCCC-EEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC-CCEEEEEEcCCc
Q 003356 254 LGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRG 330 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~-lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD-g~~Lasg~~Dg~ 330 (827)
..|.+.|. +.||+.+. +||+|+.||.|.|||+.. .+.-.+.. +..-.+.|.+++|+.. ...||+++.+|.
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn-~~tP~~~~------~~~~~~eI~~lsWNrkvqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNK-PETPFTPG------SQAPPSEIKCLSWNRKVSHILASGSPSGR 185 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCC-cCCCCCCC------CCCCcccceEeccchhhhHHhhccCCCCC
Confidence 56889998 99999766 999999999999999987 22211111 1125678999999984 558899999999
Q ss_pred EEEEeccCCeeEEEeccccc-cceeeeeecCCCCCCccceeecc----eeEEEccCC-ceEEEEecCCcceEEEEec---
Q 003356 331 LTVWSVSGCRLMSTIRQISL-SSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYG-YRLYAIEEGSSERVLIFSF--- 401 (827)
Q Consensus 331 v~vWs~~~~~l~~tl~~~~~-~~v~s~~~sp~~~~~~~~l~sg~----~i~~W~~~~-~~l~~~~~~~~~~v~~~~~--- 401 (827)
..|||+...+.+-.+..++. ..++.++|+|+.... -.++++. .+..||.+. .....+.++|...|.++++
T Consensus 186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq-l~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ-LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred ceeccccCCCcccccccCCCccceeeeeeCCCCcee-eeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCC
Confidence 99999998877766666533 347889999987421 1223332 788999754 2345556789999988888
Q ss_pred -ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCC-EEEEEeCCceE-EE
Q 003356 402 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LY 478 (827)
Q Consensus 402 -~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~-~lavag~dg~i-iw 478 (827)
.+.++|++.|+.+..|+..+++- ...+-....++..+.|.|... .+|+++-||.| ||
T Consensus 265 D~~lllSsgkD~~ii~wN~~tgEv--------------------l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 265 DPRLLLSSGKDNRIICWNPNTGEV--------------------LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred CchhhhcccCCCCeeEecCCCceE--------------------eeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 46789999999999998766543 233333455689999999866 89999999999 99
Q ss_pred EcCCCeEEe
Q 003356 479 DIRQKKWRV 487 (827)
Q Consensus 479 d~~t~~w~~ 487 (827)
++.+..|..
T Consensus 325 sl~~~~~~~ 333 (1049)
T KOG0307|consen 325 SLQGTDTDL 333 (1049)
T ss_pred eeecCCccc
Confidence 998876654
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=9.8e-13 Score=136.50 Aligned_cols=221 Identities=13% Similarity=0.160 Sum_probs=159.0
Q ss_pred CCcEEEEeeccCccccceeeccc--------------e----------ecCCCCcEE-EEEcCCC-CEEEEEecCCeEEE
Q 003356 229 NGQLMSCSVSKKGLKLAEFIKID--------------K----------ELGSGDAVC-ASIAPEQ-QILAVGTRRGVVEL 282 (827)
Q Consensus 229 dG~~~~~~~~~~~~~~~~~~~~~--------------~----------~~~h~~~v~-va~sp~~-~lla~g~~dg~v~v 282 (827)
-|+++++|.-+..|.+||+.-.. . -.+|++++- ++||... ..||+|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 36677888877788888753100 0 036888887 8888764 58999999999999
Q ss_pred EEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCe-eEEEeccccccceeeeeecC
Q 003356 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKP 360 (827)
Q Consensus 283 w~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~~-l~~tl~~~~~~~v~s~~~sp 360 (827)
||+++ +++..++.- |.+.|.+++|.| .+..|.+|+.|++|++.|..... .-...+. .+.|-.++|.|
T Consensus 271 WD~~~-g~p~~s~~~--------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~ 339 (463)
T KOG0270|consen 271 WDVDT-GKPKSSITH--------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDP 339 (463)
T ss_pred EEcCC-CCcceehhh--------cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEEEEecC
Confidence 99999 888888876 999999999999 67899999999999999986311 1111111 34577788877
Q ss_pred CCCCCccceeec---ceeEEEccCCc-eEEEEecCCcceEEEEec----ceeeeecccCCCeeeeEEEEcCCeEEEEecC
Q 003356 361 NQDCKYEPLMSG---TSMMQWDEYGY-RLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (827)
Q Consensus 361 ~~~~~~~~l~sg---~~i~~W~~~~~-~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~ 432 (827)
... ..+..+ .++.-+|.+.. +.+.+.+.|.+.|..+++ ...++|++.|+++++|++...+.+.
T Consensus 340 ~se---~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~------ 410 (463)
T KOG0270|consen 340 HSE---NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS------ 410 (463)
T ss_pred CCc---eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc------
Confidence 652 223333 36777777654 777888899999966655 5568899999999999986554421
Q ss_pred CCCcceEEEeeeceeeccCC---CcEEEEEEcCCC-CEEEEEeCCceE-EEEcCCCe
Q 003356 433 DTDELKILHLNLPVSYISQN---WPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 433 d~~~~~w~~~~~p~~~~~~~---~~I~~va~SpdG-~~lavag~dg~i-iwd~~t~~ 484 (827)
...|. +...|.++.|+- -.+|.||..+.+ +||+.++.
T Consensus 411 ---------------v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 411 ---------------VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ---------------cccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 11111 225667777774 467888888877 99987653
No 154
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=5e-12 Score=135.38 Aligned_cols=198 Identities=18% Similarity=0.191 Sum_probs=140.8
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecC---CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~d---g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg 329 (827)
..|.+.+. +.|+.+|.+||+.+.+ ..|.|+++.. ......++. ..|.|.++.|.|---+|+++.. .
T Consensus 518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK-~~sQ~PF~k--------skG~vq~v~FHPs~p~lfVaTq-~ 587 (733)
T KOG0650|consen 518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK-RKSQSPFRK--------SKGLVQRVKFHPSKPYLFVATQ-R 587 (733)
T ss_pred EecCCccceeeeecCCceEEEeccCCCcceEEEEeccc-ccccCchhh--------cCCceeEEEecCCCceEEEEec-c
Confidence 34677787 9999999999998765 4788888876 332223333 5678999999999999999998 7
Q ss_pred cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--eeEEE-ccC-CceEEEEecCCcceEEEEec---c
Q 003356 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQW-DEY-GYRLYAIEEGSSERVLIFSF---G 402 (827)
Q Consensus 330 ~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~i~~W-~~~-~~~l~~~~~~~~~~v~~~~~---~ 402 (827)
.|++||+..+.++..+... ...+++++.+|.| ..++-|+ .-++| |.+ +.+.+..+.-|...+..+.+ -
T Consensus 588 ~vRiYdL~kqelvKkL~tg-~kwiS~msihp~G----Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry 662 (733)
T KOG0650|consen 588 SVRIYDLSKQELVKKLLTG-SKWISSMSIHPNG----DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY 662 (733)
T ss_pred ceEEEehhHHHHHHHHhcC-CeeeeeeeecCCC----CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc
Confidence 9999999888777766554 5678999999988 5565555 45555 333 33455666667777766555 3
Q ss_pred eeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeece-eeccCCCc----EEEEEEcCCCCEEEEEeCCceE-
Q 003356 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV-SYISQNWP----VQHVAASKDGMFLAVAGLHGLI- 476 (827)
Q Consensus 403 ~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~-~~~~~~~~----I~~va~SpdG~~lavag~dg~i- 476 (827)
..+++|+.|+++.++.-.- | +++......+|- .+.+|... |..+.|+|...+|++||.||+|
T Consensus 663 PLfas~sdDgtv~Vfhg~V-------Y-----~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 663 PLFASGSDDGTVIVFHGMV-------Y-----NDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIR 730 (733)
T ss_pred ceeeeecCCCcEEEEeeee-------e-----hhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEE
Confidence 4577888889887654211 1 112222222333 34455544 8999999999999999999999
Q ss_pred EE
Q 003356 477 LY 478 (827)
Q Consensus 477 iw 478 (827)
+|
T Consensus 731 lf 732 (733)
T KOG0650|consen 731 LF 732 (733)
T ss_pred ee
Confidence 87
No 155
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.46 E-value=1.1e-12 Score=133.26 Aligned_cols=119 Identities=18% Similarity=0.310 Sum_probs=95.1
Q ss_pred cCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee-----cCCCCcEE-EEEcCCCCEEEEEecC
Q 003356 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQQILAVGTRR 277 (827)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~-va~sp~~~lla~g~~d 277 (827)
+..+...|-++.|+|.- ..++++++-|+++++||...+++. +.|..-|. ++||.+..+||+|+.|
T Consensus 253 f~gH~~SVEDLqWSptE---------~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 253 FTGHTKSVEDLQWSPTE---------DGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred ccccccchhhhccCCcc---------CceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 34456667777877754 335566677788889998876432 66888888 9999999999999999
Q ss_pred CeEEEEEcCC--CCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCC
Q 003356 278 GVVELYDLAE--SASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 278 g~v~vw~~~~--~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~ 339 (827)
|+++|||++. .++++..++- |+.+|+|+.|+| +...||+++.|..|.+||+.-.
T Consensus 324 Gt~~iwDLR~~~~~~pVA~fk~--------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSGQPVATFKY--------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ceEEEEEhhhccCCCcceeEEe--------ccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 9999999975 2356667777 999999999999 5678999999999999998643
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.46 E-value=3.5e-12 Score=132.78 Aligned_cols=196 Identities=14% Similarity=0.154 Sum_probs=135.4
Q ss_pred CCCcE-EEEEcCCC--CEEEEEecCCeEEEEEcCCCC---cceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcC
Q 003356 256 SGDAV-CASIAPEQ--QILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS 328 (827)
Q Consensus 256 h~~~v-~va~sp~~--~lla~g~~dg~v~vw~~~~~~---~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~D 328 (827)
+...+ +++|+|.. +++|+|..-|+|-+||+.+.. .-+..+.. |.++|.++.|+| +-..+.+.+.|
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~--------hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP--------HSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc--------CCccccceEecCCChhheeeeccC
Confidence 44444 49999964 599999999999999996311 22334444 999999999999 44578888889
Q ss_pred CcEEEEeccCCee--EEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceE-EEEecCCcceE--EEEe
Q 003356 329 RGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL-YAIEEGSSERV--LIFS 400 (827)
Q Consensus 329 g~v~vWs~~~~~l--~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l-~~~~~~~~~~v--~~~~ 400 (827)
|+|+.-|+.++.. +.++... ...+.+..|+... ..++.|. ..-+||.....- ...+.-|+..| +++.
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d-~~~fs~~d~~~e~----~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTD-NIWFSSLDFSAES----RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred ceeeeeeecchhhHHHhhcCcc-ceeeeeccccCCC----ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 9999999988753 2222211 2345555565544 3333333 334566543221 12223355577 5555
Q ss_pred c--ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeec-eeeccCCCcEEEEEEcCCCCEEEEEeCCceE-
Q 003356 401 F--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (827)
Q Consensus 401 ~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p-~~~~~~~~~I~~va~SpdG~~lavag~dg~i- 476 (827)
+ ...++|+|.|++.++||+.+-..+- -| -....|.-+|.++.|||+|-.|++.+.|..|
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~-----------------sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR 394 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKA-----------------SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR 394 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCC-----------------CcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence 5 6678999999999999997755431 01 1345788999999999998889999999999
Q ss_pred EEEcC
Q 003356 477 LYDIR 481 (827)
Q Consensus 477 iwd~~ 481 (827)
+||..
T Consensus 395 v~dss 399 (498)
T KOG4328|consen 395 VFDSS 399 (498)
T ss_pred Eeecc
Confidence 99983
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.45 E-value=2e-12 Score=139.25 Aligned_cols=262 Identities=16% Similarity=0.258 Sum_probs=180.4
Q ss_pred cEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 259 ~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
.+. ++|-|||+.|..+. +..+.+||..+ +..+.++++ |...|.|++||.||+.+|+|+.|..|.+|+..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~nd-G~llqtLKg--------HKDtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSD-GTLLQPLKG--------HKDTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCC-ccccccccc--------ccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 556 99999999888766 45789999999 899999999 99999999999999999999999999999874
Q ss_pred CCeeEEEeccccccceeeeeecCCCCCCccceeecc--eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCC
Q 003356 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSG 412 (827)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~ 412 (827)
-. -+++-.+.+.+.++.|+|-. ..+++.+ .-.+|+++....... ....++...++ |..++-|-.+|
T Consensus 84 lE---G~LkYSH~D~IQCMsFNP~~----h~LasCsLsdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 84 LE---GILKYSHNDAIQCMSFNPIT----HQLASCSLSDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred cc---ceeeeccCCeeeEeecCchH----HHhhhcchhhccccChhhhhHHhh--hhheeEEEeeecCCCcEEEEeccCc
Confidence 22 23333236789999999987 7777665 456788765332111 12345555666 88899999999
Q ss_pred CeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCC-----CEEEEEeCCceE-EEEcCCCeEE
Q 003356 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-----MFLAVAGLHGLI-LYDIRQKKWR 486 (827)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG-----~~lavag~dg~i-iwd~~t~~w~ 486 (827)
++.+++- .++.++.+ ..--+.|.||++++|+|.. ..++++....++ .|.+...
T Consensus 155 TIsiRNk-~gEek~~I-----------------~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--- 213 (1081)
T KOG1538|consen 155 TISIRNK-NGEEKVKI-----------------ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--- 213 (1081)
T ss_pred eEEeecC-CCCcceEE-----------------eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---
Confidence 9988753 33443321 2223678899999999873 478888888888 7766432
Q ss_pred eeCCccceEEEEEEEEEE--eCCEEEEEEEeeCCCcEEEEEeeCC--CCCccceEEEEecCCcc--EEEEccCCEEEEEE
Q 003356 487 VFGDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKP--IVMDVYEDYILVTY 560 (827)
Q Consensus 487 ~f~~~~~e~~~~v~gl~W--~~~~li~~~~~~~~~~~~lrly~~~--~l~~~~~~~~~~l~~~~--~~l~~~~~~llV~~ 560 (827)
..+.+. .-+|.-..+.+ .+.++++| ..+..|.+|.|+ .|..- . +..+=+ +.+-++..+..++|
T Consensus 214 ~Igk~r-~L~FdP~CisYf~NGEy~LiG-----Gsdk~L~~fTR~GvrLGTv--g---~~D~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 214 QIGKDR-ALNFDPCCISYFTNGEYILLG-----GSDKQLSLFTRDGVRLGTV--G---EQDSWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred eecccc-cCCCCchhheeccCCcEEEEc-----cCCCceEEEeecCeEEeec--c---ccceeEEEEEEccCCceEEEEE
Confidence 222110 11122223344 46788877 344678999997 33321 1 111112 33446777888899
Q ss_pred cCceEEEEEEE
Q 003356 561 RPFDVHIFHVK 571 (827)
Q Consensus 561 ~~~~i~l~~~~ 571 (827)
-||++.-|.+.
T Consensus 283 qDGTiACyNl~ 293 (1081)
T KOG1538|consen 283 QDGTIACYNLI 293 (1081)
T ss_pred ccCeeehhhhH
Confidence 99999988765
No 158
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.6e-10 Score=129.78 Aligned_cols=355 Identities=18% Similarity=0.152 Sum_probs=219.6
Q ss_pred eEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcC-cccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 003356 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (827)
Q Consensus 23 ~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G-~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~ 101 (827)
.+|.+++.|.++..+....+.+|++.+.....+.+.++ . +|- ..++.++||.++++|++..||.|++|.=-..+.
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~---~-~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~ 239 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDIT---V-HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD 239 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhh---h-hhcccceeEEeccccceEEEeccCCcEEEEecccccc
Confidence 45779999999999999999999996433222222211 2 222 257899999999999999999999998432110
Q ss_pred eeecCCCCCCCceeeeEeeEeecccccccc--cceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCccc
Q 003356 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEK--GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (827)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i 179 (827)
. . ..... +..+ .....+++.+|.+|+.|+..|.+.+| ..++..+.-
T Consensus 240 ~-------~--~t~t~----------lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W--q~~T~~kqf----------- 287 (792)
T KOG1963|consen 240 D-------S--ETCTL----------LHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW--QLETGKKQF----------- 287 (792)
T ss_pred c-------c--ccceE----------EEecccccceeEEecCCceEeecccceEEEEE--eecCCCccc-----------
Confidence 0 0 00000 1222 23445678999999999999998774 433332211
Q ss_pred ceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccc-cceeeccc---eecC
Q 003356 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKID---KELG 255 (827)
Q Consensus 180 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~-~~~~~~~~---~~~~ 255 (827)
+-.-++.|..+.++++.+..+.+..|.++.+....+..++ ..+...+. ....
T Consensus 288 ------------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~ 343 (792)
T KOG1963|consen 288 ------------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR 343 (792)
T ss_pred ------------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccc
Confidence 1122566888888888888888888888888777665554 23333221 1112
Q ss_pred CCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCC---CCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 256 SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM---DDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 256 h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~---~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
..+-.. ++++|.-+.++-.+..|.|.+||+-+ ...+..++.-+.-+.. .+.-.++.++.+-+|.++|+.-.
T Consensus 344 ~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t-d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~---- 418 (792)
T KOG1963|consen 344 PQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT-DSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEA---- 418 (792)
T ss_pred ccccceeEEEcCCCCceeecCCCceEEEEeccc-cceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeee----
Confidence 234444 89999888899999999999999987 5555555443222221 24456778888888888887643
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeec-ceeEEEccCC----ceEEE-EecCCcceEE--EEec--
Q 003356 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-TSMMQWDEYG----YRLYA-IEEGSSERVL--IFSF-- 401 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg-~~i~~W~~~~----~~l~~-~~~~~~~~v~--~~~~-- 401 (827)
|.-.- ....| ...++|.... ..|-. +...|...+. ++..
T Consensus 419 --~~d~~-----------------------------~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~ 467 (792)
T KOG1963|consen 419 --RIDKF-----------------------------NFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPT 467 (792)
T ss_pred --eehhh-----------------------------hccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCc
Confidence 21000 00010 2345554322 12211 2234554442 2222
Q ss_pred -ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEc
Q 003356 402 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480 (827)
Q Consensus 402 -~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~ 480 (827)
...+++++.|+.+++|.+...++- ......|....+ ..| |+.|+.+++||.||..||+|-.|-..+||.
T Consensus 468 rs~~~vta~~dg~~KiW~~~~~~n~-------~k~~s~W~c~~i-~sy--~k~~i~a~~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 468 RSVRCVTASVDGDFKIWVFTDDSNI-------YKKSSNWTCKAI-GSY--HKTPITALCFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred ccceeEEeccCCeEEEEEEeccccc-------CcCccceEEeee-ecc--ccCcccchhhcCCCcEEEEecCCEEEEecC
Confidence 226889999999999987543331 111235633222 234 788999999999998888776554449999
Q ss_pred CCC
Q 003356 481 RQK 483 (827)
Q Consensus 481 ~t~ 483 (827)
.+.
T Consensus 538 ~~~ 540 (792)
T KOG1963|consen 538 DTK 540 (792)
T ss_pred CCh
Confidence 774
No 159
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.1e-12 Score=133.76 Aligned_cols=205 Identities=16% Similarity=0.189 Sum_probs=130.2
Q ss_pred CceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 003356 21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (827)
Q Consensus 21 ~~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~ 99 (827)
.+.+++|+.||..+|++ +|++++||+. |.... -.+..++++++.++.|||||+.||+.++| ..++|++..+
T Consensus 146 ~~k~vaf~~~gs~latgg~dg~lRv~~~--Ps~~t-----~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 146 QQKVVAFNGDGSKLATGGTDGTLRVWEW--PSMLT-----ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred cceEEEEcCCCCEeeeccccceEEEEec--Ccchh-----hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence 46889999999999998 7899999997 32211 11234678999999999999999999999 7999999855
Q ss_pred CceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCccc
Q 003356 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (827)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i 179 (827)
..-...... +.++++..+ ++.-++.. ...
T Consensus 218 ~~~a~~t~~--------------------------------~k~~~~~~c------RF~~d~~~-~~l------------ 246 (398)
T KOG0771|consen 218 AALARKTPF--------------------------------SKDEMFSSC------RFSVDNAQ-ETL------------ 246 (398)
T ss_pred chhhhcCCc--------------------------------ccchhhhhc------eecccCCC-ceE------------
Confidence 211000000 000100000 01011000 000
Q ss_pred ceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCcccccee----eccceecC
Q 003356 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF----IKIDKELG 255 (827)
Q Consensus 180 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~----~~~~~~~~ 255 (827)
- .++...+-|.+.. .+ +.+|+. ...+....
T Consensus 247 ---------------------------------~--------laa~~~~~~~v~~---~~--~~~w~~~~~l~~~~~~~~ 280 (398)
T KOG0771|consen 247 ---------------------------------R--------LAASQFPGGGVRL---CD--ISLWSGSNFLRLRKKIKR 280 (398)
T ss_pred ---------------------------------E--------EEEecCCCCceeE---EE--eeeeccccccchhhhhhc
Confidence 0 0000111111111 01 112222 11122244
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 003356 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (827)
Q Consensus 256 h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs 335 (827)
++...+++++++|+++|.|+.||.|.+|+..+ .+.++-.+. .|.+.|+.+.|+||.+++++-+.|.+.+|-.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~-lq~~~~vk~-------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKS-LQRLQYVKE-------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEece-eeeeEeehh-------hheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 55666799999999999999999999999887 555543332 3999999999999999999999999999988
Q ss_pred ccC
Q 003356 336 VSG 338 (827)
Q Consensus 336 ~~~ 338 (827)
+..
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 765
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.44 E-value=1.5e-09 Score=120.70 Aligned_cols=351 Identities=22% Similarity=0.308 Sum_probs=215.0
Q ss_pred eEEEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEE-cCCcc-EEEEEec-CcEEEEEEEEe
Q 003356 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW-SPDTK-LIAVVTS-SLYLHIFKVQI 98 (827)
Q Consensus 23 ~vv~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~w-SPDg~-~lav~t~-dg~l~l~~v~~ 98 (827)
..+.|.+++..++..+ ++.+.+|+.......+..+.-... ..+..+.+ +|++. .++..+. ++.+.+|++..
T Consensus 69 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----CceeeEEEECCCcceEEeccCCCCccEEEEEecC
Confidence 4467888998888775 889999998633313333322111 24455556 99998 5555555 89999999974
Q ss_pred -cCceeecCCCCCCCceeeeEeeEeecccccccccce--EEEeecCCCeEEEEec-CCcEEEEecCCccCcceeecccCC
Q 003356 99 -TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLS--VSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSN 174 (827)
Q Consensus 99 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--v~~~~~d~~~llv~t~-dg~i~~~~w~~~~~~~~~l~~~p~ 174 (827)
...... +..+... ..++.+++..++.+.. ++.+..|+-.. .....
T Consensus 144 ~~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------ 192 (466)
T COG2319 144 PGKLIRT-----------------------LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--GKPLS------ 192 (466)
T ss_pred CCeEEEE-----------------------EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--CceEE------
Confidence 111000 1112222 3355666676666664 88887754332 11110
Q ss_pred CCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCc-EEEEeeccCccccceeeccce-
Q 003356 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK- 252 (827)
Q Consensus 175 ~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~~~~~~~~~~~~~~~- 252 (827)
....+...+..+++ .++|+ +++.+..++.+.+|+......
T Consensus 193 ----------------------------~~~~~~~~v~~~~~----------~~~~~~~~~~~~~d~~i~~wd~~~~~~~ 234 (466)
T COG2319 193 ----------------------------TLAGHTDPVSSLAF----------SPDGGLLIASGSSDGTIRLWDLSTGKLL 234 (466)
T ss_pred ----------------------------eeccCCCceEEEEE----------cCCcceEEEEecCCCcEEEEECCCCcEE
Confidence 01123444656553 35555 333335666777775442222
Q ss_pred ---ecCCCCcEEE-EEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC
Q 003356 253 ---ELGSGDAVCA-SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (827)
Q Consensus 253 ---~~~h~~~v~v-a~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D 328 (827)
+.+|.... + .|+|++.++++++.|+.+++|++.........+.. |...|.++.|+|++..+++++.|
T Consensus 235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~d 305 (466)
T COG2319 235 RSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG--------HSSSVLSVAFSPDGKLLASGSSD 305 (466)
T ss_pred eeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec--------CCccEEEEEECCCCCEEEEeeCC
Confidence 34566554 3 79999999999999999999999873332333333 88999999999999999999999
Q ss_pred CcEEEEeccCCeeEEEec--cccccceeeeeecCCCCCCccceeec----ceeEEEccCCceEEEEecCCcceEEEEecc
Q 003356 329 RGLTVWSVSGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSG----TSMMQWDEYGYRLYAIEEGSSERVLIFSFG 402 (827)
Q Consensus 329 g~v~vWs~~~~~l~~tl~--~~~~~~v~s~~~sp~~~~~~~~l~sg----~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~ 402 (827)
+.+++|+..+........ .| ...+..+.+.+++ ..+..+ ..+..|+............... +..+.+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 379 (466)
T COG2319 306 GTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDG----SLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS 379 (466)
T ss_pred CcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCC----CEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC
Confidence 899999998877666655 44 3357777773221 222222 2455588776652222222221 3222221
Q ss_pred -e-eee-ecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EE
Q 003356 403 -K-CCL-NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (827)
Q Consensus 403 -~-~~~-s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iw 478 (827)
. ... .+..++.+.+|+....... .....+...+....+++++.+++.++.++.+ .|
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (466)
T COG2319 380 PDGRVVSSGSTDGTVRLWDLSTGSLL--------------------RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439 (466)
T ss_pred CCCCEEEEecCCCceEEEecccCeee--------------------eeccCCCCcEEEEEECCCCcEEEEecCCCcEEEE
Confidence 1 111 2466777777776544431 1111211679999999999999999999999 99
Q ss_pred EcCC
Q 003356 479 DIRQ 482 (827)
Q Consensus 479 d~~t 482 (827)
+..+
T Consensus 440 ~~~~ 443 (466)
T COG2319 440 DLKT 443 (466)
T ss_pred eccC
Confidence 9877
No 161
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.43 E-value=4e-12 Score=134.23 Aligned_cols=138 Identities=20% Similarity=0.206 Sum_probs=99.2
Q ss_pred CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 268 ~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
...++.++.||.+.+-+ ..++..+.+.. |.++|.|-.|+|||.-|.++++||.|++|+-.|. +-.++.+
T Consensus 75 ~d~~~i~s~DGkf~il~--k~~rVE~sv~A--------H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q 143 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN--KSARVERSISA--------HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRSTVVQ 143 (737)
T ss_pred cceEEEEcCCceEEEec--ccchhhhhhhh--------hhhhhhhcccCCCCceeeeecCCceEEEEeccch-HHHHHhh
Confidence 45788999999998844 33566666666 9999999999999999999999999999997754 4445544
Q ss_pred ccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEE
Q 003356 348 ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~ 419 (827)
. ..+|.+++|.|+.. .-.+..|..+.+=...-..-...++.|++-|+++++ ...+++|+.|-..++||.
T Consensus 144 ~-~~~v~c~~W~p~S~--~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 144 N-EESIRCARWAPNSN--SIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA 215 (737)
T ss_pred c-CceeEEEEECCCCC--ceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc
Confidence 4 45799999999872 111222222211111222223445678888888887 678899999999999984
No 162
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.43 E-value=5.4e-12 Score=129.00 Aligned_cols=209 Identities=16% Similarity=0.226 Sum_probs=138.8
Q ss_pred CCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEcc
Q 003356 302 YSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380 (827)
Q Consensus 302 ~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~ 380 (827)
.-.+|+++|..++|+| +.+.||||++|.+|.||.+..+.+...+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------------------------------- 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------------------------------- 121 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc----------------------------------
Confidence 3446999999999999 67899999999999999997765443321
Q ss_pred CCceEEEEecCCcceE--EEEec--ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEE
Q 003356 381 YGYRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (827)
Q Consensus 381 ~~~~l~~~~~~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~ 456 (827)
+....+.+|..+| +++.+ ...++|++.|.++.+|++.+++.- -+ +.|..-|.
T Consensus 122 ---epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal--------------------i~-l~hpd~i~ 177 (472)
T KOG0303|consen 122 ---EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL--------------------IT-LDHPDMVY 177 (472)
T ss_pred ---cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCcee--------------------ee-cCCCCeEE
Confidence 1222334455444 33444 556788999999999999888772 22 33888999
Q ss_pred EEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeCCCCCccc
Q 003356 457 HVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSS 535 (827)
Q Consensus 457 ~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~~~l~~~~ 535 (827)
+++|+-||.+++++++|..+ +||..+++--.-+ ..||..- -....|.++..+........+..++-+|.-.+|..--
T Consensus 178 S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k-~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~ 255 (472)
T KOG0303|consen 178 SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAK-PARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPI 255 (472)
T ss_pred EEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCC-cceeEEeccCceeeeccccccccceeccCcccccCcc
Confidence 99999999999999999999 9999998743322 2333221 1235687665554433444556677777776666654
Q ss_pred eEEEEecCCccEEEEc-cCCEEEE---EEcCceEEEEEEE
Q 003356 536 LLCRKSLLAKPIVMDV-YEDYILV---TYRPFDVHIFHVK 571 (827)
Q Consensus 536 ~~~~~~l~~~~~~l~~-~~~~llV---~~~~~~i~l~~~~ 571 (827)
.+.+.+- +.-++|-+ ..|.-+| +-.|+.|+.|.+.
T Consensus 256 ~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 256 ALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred eeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 4444443 33455554 2332222 3445667777554
No 163
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.42 E-value=3.3e-10 Score=123.59 Aligned_cols=232 Identities=13% Similarity=0.155 Sum_probs=131.8
Q ss_pred EccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEe-cCcEEEEEEEEecCceeecCCCCCCCcee
Q 003356 37 ASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKSIQIGGKQPSGLFF 115 (827)
Q Consensus 37 ~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t-~dg~l~l~~v~~~~~~~~~~~~~~~~~~~ 115 (827)
..+++|.+|+.+ ....+....+ +...|....++++|||++|++++ .++.|.+|++. +......
T Consensus 9 ~~~~~I~~~~~~-~~g~l~~~~~----~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~---------- 72 (330)
T PRK11028 9 PESQQIHVWNLN-HEGALTLLQV----VDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTF---------- 72 (330)
T ss_pred CCCCCEEEEEEC-CCCceeeeeE----EecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEE----------
Confidence 467899999984 3222222211 22235556899999999998875 47889999986 2111100
Q ss_pred eeEeeEeecccccccccceEEEeecCCCeEEEEec-CCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccc
Q 003356 116 IKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (827)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~-dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~ 194 (827)
.......+ ...-.++.++++.++++.. ++.+.+++.+........ +..
T Consensus 73 -------~~~~~~~~-~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~----------~~~------------- 121 (330)
T PRK11028 73 -------AAESPLPG-SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP----------IQI------------- 121 (330)
T ss_pred -------eeeecCCC-CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc----------eee-------------
Confidence 01111111 1223466778888888764 677777665421100000 000
Q ss_pred cCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEee-ccCccccceeecccee----------cCCCCcEEEE
Q 003356 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE----------LGSGDAVCAS 263 (827)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~~~~~~~~~~~~~~~~----------~~h~~~v~va 263 (827)
...... ...+.++|||+.++++. .++.+.+|+......+ .....+-.++
T Consensus 122 ----------~~~~~~----------~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 122 ----------IEGLEG----------CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred ----------ccCCCc----------ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence 000000 12245788887765444 4577888887542111 1112233489
Q ss_pred EcCCCCEEEEEec-CCeEEEEEcCCC-Cc--ceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc-CCcEEEEecc
Q 003356 264 IAPEQQILAVGTR-RGVVELYDLAES-AS--LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS 337 (827)
Q Consensus 264 ~sp~~~lla~g~~-dg~v~vw~~~~~-~~--~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~-Dg~v~vWs~~ 337 (827)
|+|+|++++++.. +++|.+|+++.. +. .+..+.. .+....+......+.++|||++|+++.+ ++.|.+|++.
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM--MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec--CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 9999999988876 899999999742 22 1222221 1100012223346899999999988854 6788888774
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.40 E-value=5.4e-12 Score=128.38 Aligned_cols=200 Identities=15% Similarity=0.213 Sum_probs=148.1
Q ss_pred cCCCCcEE-EEEcC--CCCEEEEEecCCeEEEEEcCCC---------------CcceEEEEeecCCCCCCCCCCeEEEEE
Q 003356 254 LGSGDAVC-ASIAP--EQQILAVGTRRGVVELYDLAES---------------ASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (827)
Q Consensus 254 ~~h~~~v~-va~sp--~~~lla~g~~dg~v~vw~~~~~---------------~~~~~~l~~~~~~~~~~h~~~V~~l~~ 315 (827)
..|.+.+. +..++ +..+.|+=+..|.|.||++... .+++.++.+ |.+.=..++|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g--------hk~EGy~LdW 219 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG--------HKGEGYGLDW 219 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc--------cCccceeeec
Confidence 34555554 55555 4467777788899999998651 123344444 8888899999
Q ss_pred CCCCC-EEEEEEcCCcEEEEeccCCeeE---EEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCc---eE
Q 003356 316 TPDNS-AFAVGWKSRGLTVWSVSGCRLM---STIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY---RL 385 (827)
Q Consensus 316 spDg~-~Lasg~~Dg~v~vWs~~~~~l~---~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~---~l 385 (827)
||--. .|++|..-+.|++|...++.-. ..+.+| +.+|-.+++||... ..+++++ ++++||.+.+ ..
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH-~~SVEDLqWSptE~---~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGH-TKSVEDLQWSPTED---GVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred ccccccccccCccccceEeeeeccCceeecCcccccc-ccchhhhccCCccC---ceEEeeecCceEEEEEecCCCccce
Confidence 99322 5888888899999999776532 234455 77899999999862 4566665 9999999877 33
Q ss_pred EEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcC
Q 003356 386 YAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK 462 (827)
Q Consensus 386 ~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Sp 462 (827)
+.+ +.|...|.++++ ...+++|+.||+.++|++.+-... +....|.-|..||+++.|+|
T Consensus 296 ~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-----------------~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-----------------QPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred eEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-----------------CcceeEEeccCCeeEEEecc
Confidence 333 788888888888 236899999999999999765442 12457888999999999998
Q ss_pred C-CCEEEEEeCCceE-EEEcCCC
Q 003356 463 D-GMFLAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 463 d-G~~lavag~dg~i-iwd~~t~ 483 (827)
. ...+|++|.|..+ +||+...
T Consensus 358 ~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 358 HEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ccCceEEeccCCCcEEEEEeecc
Confidence 6 5678888888888 9998654
No 165
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.40 E-value=3.2e-11 Score=127.59 Aligned_cols=218 Identities=15% Similarity=0.190 Sum_probs=137.0
Q ss_pred cEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec
Q 003356 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS 150 (827)
Q Consensus 71 ~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~ 150 (827)
.++.|+..-..+.++..+-.++-|++...+........ -.++.. ..+..+-.-++ ...+.++++++
T Consensus 18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~----df~pt~-~h~~~rs~~~g---------~~~d~~~i~s~ 83 (737)
T KOG1524|consen 18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPD----DFVPTD-MHLGGRSSGGG---------KGSDTLLICSN 83 (737)
T ss_pred EeecccccceEEEeccCceEEEeecccchhhhhhhCCc----ccCCcc-ccccccccCCC---------CCcceEEEEcC
Confidence 46889988888888877766666777544432211100 000000 00111100011 12367899999
Q ss_pred CCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCC
Q 003356 151 DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG 230 (827)
Q Consensus 151 dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG 230 (827)
||.+.+++-.+.-.... ..+.+.+.+ .-.++||
T Consensus 84 DGkf~il~k~~rVE~sv-------------------------------------~AH~~A~~~----------gRW~~dG 116 (737)
T KOG1524|consen 84 DGRFVILNKSARVERSI-------------------------------------SAHAAAISS----------GRWSPDG 116 (737)
T ss_pred CceEEEecccchhhhhh-------------------------------------hhhhhhhhh----------cccCCCC
Confidence 99998875443321111 111222222 2367899
Q ss_pred cEEEEeeccCccccceeeccce--ecCCCCcE-EEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCC
Q 003356 231 QLMSCSVSKKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (827)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v-~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~ 307 (827)
.-++++..|+.+++|.....-+ +.....++ |++|.|+.+-+..+ ..+.+.+=-+.. ...+-.++. |.
T Consensus 117 tgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~-n~k~i~WkA--------HD 186 (737)
T KOG1524|consen 117 AGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAA-NSKIIRWRA--------HD 186 (737)
T ss_pred ceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeeccc-ccceeEEec--------cC
Confidence 9999999999999998543211 12234455 59999998776653 455666655555 344445666 99
Q ss_pred CCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCC
Q 003356 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (827)
Q Consensus 308 ~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (827)
|-|.++.|+|....+++|++|-..+|||.+|..++.+-. | ..++++++|.|+
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~-~-ey~ITSva~npd 238 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAA-E-EYAITSVAFNPE 238 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEeecccCcccccCCh-h-ccceeeeeeccc
Confidence 999999999999999999999999999999987765533 2 456778877776
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.39 E-value=6.9e-11 Score=121.70 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=69.4
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEE
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
.+|.+-+. ++|+|++.++++|+-|.++++||+.. +.....+.. |...|..++|.|-++++++-+.|...+
T Consensus 120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~d--------h~~yvqgvawDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDD--------HEHYVQGVAWDPLNQYVASKSSDRHPE 190 (434)
T ss_pred cccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccc--------cccccceeecchhhhhhhhhccCcccc
Confidence 56777777 99999999999999999999999998 777777776 999999999999999999999999888
Q ss_pred EEeccCCee
Q 003356 333 VWSVSGCRL 341 (827)
Q Consensus 333 vWs~~~~~l 341 (827)
+.+....+.
T Consensus 191 ~~~~~~~~~ 199 (434)
T KOG1009|consen 191 GFSAKLKQV 199 (434)
T ss_pred eeeeeeeee
Confidence 887755443
No 167
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=3e-11 Score=116.15 Aligned_cols=251 Identities=15% Similarity=0.166 Sum_probs=161.9
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeE
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~l 145 (827)
.+..+.+-+|||-+++|+++..+|.|-+..+..-... ...++ .....++..++++++..+....+.|
T Consensus 9 ~~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~----sa~~~---------gk~~iv~eqahdgpiy~~~f~d~~L 75 (325)
T KOG0649|consen 9 AYNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG----SAEPP---------GKLKIVPEQAHDGPIYYLAFHDDFL 75 (325)
T ss_pred HHHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc----ccCCC---------CCcceeeccccCCCeeeeeeehhhe
Confidence 3556677889999999999999999999998532211 11111 0011223467788888887776666
Q ss_pred EEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEE
Q 003356 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (827)
Q Consensus 146 lv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (827)
++|. ||.++-|.|..+.....
T Consensus 76 ls~g-dG~V~gw~W~E~~es~~---------------------------------------------------------- 96 (325)
T KOG0649|consen 76 LSGG-DGLVYGWEWNEEEESLA---------------------------------------------------------- 96 (325)
T ss_pred eecc-CceEEEeeehhhhhhcc----------------------------------------------------------
Confidence 6555 59999999985432100
Q ss_pred EEeCCcEEEEeeccCccccceeecccee-cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCC
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~ 303 (827)
+-++|....+... .-.-.-+. +...|...-+.+++-|+.+.-||+.+ ++..+++++
T Consensus 97 ---------------~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~-G~i~r~~rG------ 154 (325)
T KOG0649|consen 97 ---------------TKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED-GRIQREYRG------ 154 (325)
T ss_pred ---------------chhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC-CEEEEEEcC------
Confidence 0011222211110 00011122 55667666666667899999999999 899999999
Q ss_pred CCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecccc---------ccceeeeeecCCCCCCccceeecc-
Q 003356 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS---------LSSISSPIVKPNQDCKYEPLMSGT- 373 (827)
Q Consensus 304 ~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~---------~~~v~s~~~sp~~~~~~~~l~sg~- 373 (827)
|+..|.++.-......+.+|++||++|+||..+++.+.++.... ...+-+++.+. .-++.|.
T Consensus 155 --HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e------dWlvCGgG 226 (325)
T KOG0649|consen 155 --HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE------DWLVCGGG 226 (325)
T ss_pred --CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC------ceEEecCC
Confidence 99999999986656678899999999999999999988876421 11233333322 2233332
Q ss_pred -eeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCeeeeEE
Q 003356 374 -SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 374 -~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~ 419 (827)
...+|.....+...++.- ..++-...| .+.+++++..+.+..|.+
T Consensus 227 p~lslwhLrsse~t~vfpi-pa~v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 227 PKLSLWHLRSSESTCVFPI-PARVHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred CceeEEeccCCCceEEEec-ccceeEeeeecceEEEeccccceeeeee
Confidence 778898887776555432 334555556 667777777777777764
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.39 E-value=1.1e-11 Score=123.74 Aligned_cols=229 Identities=13% Similarity=0.127 Sum_probs=155.3
Q ss_pred EecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecC
Q 003356 28 KVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIG 106 (827)
Q Consensus 28 spdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~ 106 (827)
-|+.++||+.+ +.-|.+||+ ..+.+-+.+ |.-...++.-...+++|||||..|..+- +..|++|++.......
T Consensus 120 qP~t~l~a~ssr~~PIh~wda-ftG~lraSy-~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c--- 193 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDA-FTGKLRASY-RAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDC--- 193 (406)
T ss_pred CCccceeeeccccCceeeeec-cccccccch-hhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCC---
Confidence 36677888774 567999999 466655554 3334455666667899999999999874 6789999985332110
Q ss_pred CCCCCCceeeeEeeEeecccccccccceEEEeecCC---CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceec
Q 003356 107 GKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN---KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSH 183 (827)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~---~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~ 183 (827)
+.... ..+++ .+..+.++|++..+ +.+++++....+-++.|++......
T Consensus 194 -------~vy~t--~~~~k---~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l---------------- 245 (406)
T KOG2919|consen 194 -------PVYTT--VTKGK---FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL---------------- 245 (406)
T ss_pred -------cchhh--hhccc---ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee----------------
Confidence 00000 00111 12344566665544 4678888888888888886543211
Q ss_pred ccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeec-cCccccceeecccee----cCCC-
Q 003356 184 HFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE----LGSG- 257 (827)
Q Consensus 184 ~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-~~~~~~~~~~~~~~~----~~h~- 257 (827)
+.++++.|+.+. +.+||..+++++. +..+-.||+...... ..|.
T Consensus 246 --------------------lggh~gGvThL~----------~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~ 295 (406)
T KOG2919|consen 246 --------------------LGGHGGGVTHLQ----------WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG 295 (406)
T ss_pred --------------------ecccCCCeeeEE----------eccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc
Confidence 235677888887 5567777776664 445668998754322 2333
Q ss_pred ---CcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC
Q 003356 258 ---DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (827)
Q Consensus 258 ---~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D 328 (827)
..+.....|++++||+|+.||.|++||+++.+..+..+.. |...|+.++++|-=..+|+++..
T Consensus 296 ~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~--------~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 296 DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN--------YSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc--------ccccccceecCcccceeeeccCc
Confidence 3455677899999999999999999999986665655555 88899999999998888888753
No 169
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.38 E-value=1.4e-11 Score=133.07 Aligned_cols=246 Identities=15% Similarity=0.106 Sum_probs=157.0
Q ss_pred cCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce-----ecCCCCcEE-EEEcCCC-CEEEEEec
Q 003356 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPEQ-QILAVGTR 276 (827)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~-va~sp~~-~lla~g~~ 276 (827)
+..|...|.+++| .+-...+++++.|.+++.|+...... ..||...+. ++|.|+. ..+++|+.
T Consensus 96 ~~aH~nAifDl~w----------apge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgR 165 (720)
T KOG0321|consen 96 PLAHKNAIFDLKW----------APGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGR 165 (720)
T ss_pred cccccceeEeecc----------CCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccC
Confidence 3456667777763 34334566677788999999876543 278999998 9999964 57889999
Q ss_pred CCeEEEEEcCCCCc--------ceE-EEEe---------ecCCCCCCCCCCeEE---EEECCCCCEEEEEEc-CCcEEEE
Q 003356 277 RGVVELYDLAESAS--------LIR-TVSL---------YDWGYSMDDTGPVSC---IAWTPDNSAFAVGWK-SRGLTVW 334 (827)
Q Consensus 277 dg~v~vw~~~~~~~--------~~~-~l~~---------~~~~~~~~h~~~V~~---l~~spDg~~Lasg~~-Dg~v~vW 334 (827)
||.|.|||+.-.+. .+. ...+ +...-.-+|.+.|.+ +-+.-|...||++++ |++|+||
T Consensus 166 Dg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVW 245 (720)
T KOG0321|consen 166 DGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVW 245 (720)
T ss_pred CCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEE
Confidence 99999999875220 000 0000 000011135556666 667788999999988 9999999
Q ss_pred eccCCeeEEEecc--------cc--ccceeeeeecCCCCCCccc-eeecc--eeEEEccCCceE--EEEecCCc---ceE
Q 003356 335 SVSGCRLMSTIRQ--------IS--LSSISSPIVKPNQDCKYEP-LMSGT--SMMQWDEYGYRL--YAIEEGSS---ERV 396 (827)
Q Consensus 335 s~~~~~l~~tl~~--------~~--~~~v~s~~~sp~~~~~~~~-l~sg~--~i~~W~~~~~~l--~~~~~~~~---~~v 396 (827)
|+..........- +. ...+.++.....| .. +++.. +|..|+..+... .....++. ..+
T Consensus 246 DLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG----t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v 321 (720)
T KOG0321|consen 246 DLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG----TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV 321 (720)
T ss_pred eecccccccccCCCcccCccCcccceeeeEEEEecCCC----CeEEEEecCCcEEEEeccccCcCchhhccCcccceeee
Confidence 9965543222110 10 0123444443333 33 33332 778888765432 22222221 112
Q ss_pred -EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCC--CCEEEEEeC
Q 003356 397 -LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD--GMFLAVAGL 472 (827)
Q Consensus 397 -~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Spd--G~~lavag~ 472 (827)
..+++ +.++++|+.|....+|.+...+.. |..+++|.-.|.+++|.|. +. +|++++
T Consensus 322 ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~-------------------~~~l~Ght~eVt~V~w~pS~~t~-v~TcSd 381 (720)
T KOG0321|consen 322 KSELSPDDCSLLSGSSDEQAYIWVVSSPEAP-------------------PALLLGHTREVTTVRWLPSATTP-VATCSD 381 (720)
T ss_pred eeecCCCCceEeccCCCcceeeeeecCccCC-------------------hhhhhCcceEEEEEeeccccCCC-ceeecc
Confidence 34455 788889999999998888766653 5678899999999999664 55 555699
Q ss_pred CceE-EEEcCCC
Q 003356 473 HGLI-LYDIRQK 483 (827)
Q Consensus 473 dg~i-iwd~~t~ 483 (827)
|-.+ +|++..+
T Consensus 382 D~~~kiW~l~~~ 393 (720)
T KOG0321|consen 382 DFRVKIWRLSNG 393 (720)
T ss_pred CcceEEEeccCc
Confidence 9888 9999654
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.38 E-value=5.2e-11 Score=121.92 Aligned_cols=198 Identities=13% Similarity=0.175 Sum_probs=144.0
Q ss_pred cCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCC------cceEEEEeecCCCCCCCCCCeEEEEECCC-CCEEEE
Q 003356 254 LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAV 324 (827)
Q Consensus 254 ~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~------~~~~~l~~~~~~~~~~h~~~V~~l~~spD-g~~Las 324 (827)
.||..++. ++|+| +...||+|+.|.+|.||.+.+.+ +.+..+.+ |+..|-.++|+|- .+.|++
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g--------H~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG--------HQRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee--------cceeEEEEeecccchhhHhh
Confidence 68999999 99999 56789999999999999998732 23455666 9999999999994 568999
Q ss_pred EEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcc----eEE
Q 003356 325 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE----RVL 397 (827)
Q Consensus 325 g~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~----~v~ 397 (827)
++.|++|.+|++.++..+-++. | .+-|.++.|+.+| ..+++.+ .+++|++..++++....+|.+ ++.
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~-h-pd~i~S~sfn~dG----s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai 223 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLD-H-PDMVYSMSFNRDG----SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI 223 (472)
T ss_pred ccCCceEEEEeccCCceeeecC-C-CCeEEEEEeccCC----ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence 9999999999999999888887 5 6789999999999 8888777 899999999999887766643 233
Q ss_pred EEecceeeeeccc----CCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeC-
Q 003356 398 IFSFGKCCLNRGV----SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL- 472 (827)
Q Consensus 398 ~~~~~~~~~s~~~----d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~- 472 (827)
-+.-++ ++|.+. +..+-+|+-.+-+..+. ..-+....-|.-=-+++|-..++.+|+
T Consensus 224 fl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~------------------~~elDtSnGvl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 224 FLASGK-IFTTGFSRMSERQIALWDPNNLEEPIA------------------LQELDTSNGVLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred EeccCc-eeeeccccccccceeccCcccccCcce------------------eEEeccCCceEEeeecCCCCEEEEEecC
Confidence 333355 333333 23344555433333110 011122333555567888887776664
Q ss_pred CceE-EEEcCCCe
Q 003356 473 HGLI-LYDIRQKK 484 (827)
Q Consensus 473 dg~i-iwd~~t~~ 484 (827)
||.| .|.+....
T Consensus 285 D~~IRYyEit~d~ 297 (472)
T KOG0303|consen 285 DSSIRYFEITNEP 297 (472)
T ss_pred CcceEEEEecCCC
Confidence 7888 88876554
No 171
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=4.3e-12 Score=131.49 Aligned_cols=192 Identities=15% Similarity=0.102 Sum_probs=131.9
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC
Q 003356 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 260 v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~ 339 (827)
-+++|+++|+.+|+|+.||++|+|+..+ ...+..... |.+.|.++.|||||+.||+-+.| ..+||++.++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~--------~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIA--------HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHh--------hcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence 4599999999999999999999999876 444444444 89999999999999999999998 9999999998
Q ss_pred eeEEEecc-ccccceeeeeecCCCCCCccceeec---------ceeEEEccCCceEEEEecCCcceE--EEEec-ceeee
Q 003356 340 RLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSG---------TSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCL 406 (827)
Q Consensus 340 ~l~~tl~~-~~~~~v~s~~~sp~~~~~~~~l~sg---------~~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~ 406 (827)
..+.++.. .......++.|+.+++...-.+++- ..+..|+....-.+.........| ++++. ++.++
T Consensus 218 ~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 218 AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA 297 (398)
T ss_pred chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence 77766653 2233567778877764311111111 133445543111111111112234 45555 89999
Q ss_pred ecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
-|+.||.+-+.+...-+. ++ ..-..|..-|+.+.|+||.+++++-+.+..+ +-.+
T Consensus 298 lGT~dGsVai~~~~~lq~-----------------~~--~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQR-----------------LQ--YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred EeccCCcEEEEEeceeee-----------------eE--eehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 999999888776543222 11 1224788899999999999999988777666 6654
No 172
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.38 E-value=3.2e-11 Score=126.45 Aligned_cols=286 Identities=13% Similarity=0.194 Sum_probs=185.0
Q ss_pred eEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEe--cCcEEEEEEEEecCceeecCCCC
Q 003356 32 GLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT--SSLYLHIFKVQITEKSIQIGGKQ 109 (827)
Q Consensus 32 ~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t--~dg~l~l~~v~~~~~~~~~~~~~ 109 (827)
++.++.+.+.++|||+. ......++.- .-.++| +.++.|+.... |+|++ .|..+++|.=....
T Consensus 4 Nl~~aS~gd~~kl~D~s-~~~~~~~~~~---~t~~pg-~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~--------- 68 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFS-DLETKSEYVH---QTAEPG-DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKT--------- 68 (673)
T ss_pred ceeeeccCCceEEeecc-cccCcccccc---CCCCCc-ceeeeccccce-EEEeecCCceeEEEecccCCC---------
Confidence 46666677778999995 3222111110 012356 67899988765 55555 44556666532110
Q ss_pred CCCceeeeEeeEeecccccccccceEEEeecCC--CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCC
Q 003356 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN--KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (827)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~--~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~ 187 (827)
.+.++. +. ..++ .-.|+++.. -+++.|+..|.+++|+...+...
T Consensus 69 -~~Vp~~-------~k--~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h---------------------- 114 (673)
T KOG4378|consen 69 -PEVPRV-------RK--LTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH---------------------- 114 (673)
T ss_pred -Ccccee-------ec--cccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh----------------------
Confidence 011111 00 1111 122333333 56777788899988544321111
Q ss_pred CCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee-cCCCCcEE-EEEc
Q 003356 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVC-ASIA 265 (827)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~-va~s 265 (827)
..+++++..|+.+.|......++.++-.|.+++-+...+. +. ..+ .+....|+ +.++
T Consensus 115 --------------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~-~t------t~f~~~sgqsvRll~ys 173 (673)
T KOG4378|consen 115 --------------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ-KT------TTFTIDSGQSVRLLRYS 173 (673)
T ss_pred --------------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc-cc------cceecCCCCeEEEeecc
Confidence 1245677889999999888888888888887775543221 00 011 23346676 9999
Q ss_pred CCCC-EEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCC-CEEEEEEcCCcEEEEeccCCeeEE
Q 003356 266 PEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMS 343 (827)
Q Consensus 266 p~~~-lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg-~~Lasg~~Dg~v~vWs~~~~~l~~ 343 (827)
|..+ +|.+++.+|+|.+||+.. ...+..+.. .|..|...++|||.. .+|++-+.|..|.+||....+...
T Consensus 174 ~skr~lL~~asd~G~VtlwDv~g-~sp~~~~~~-------~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 174 PSKRFLLSIASDKGAVTLWDVQG-MSPIFHASE-------AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred cccceeeEeeccCCeEEEEeccC-CCcccchhh-------hccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 9655 677899999999999987 555543322 299999999999954 577888999999999999887776
Q ss_pred EeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCc-eEEEEecCCcceEEEEec
Q 003356 344 TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF 401 (827)
Q Consensus 344 tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~-~l~~~~~~~~~~v~~~~~ 401 (827)
+|.- ..+.++++|+++| ..++.|. .+..+|.++. +.+.+...|+..|..+.|
T Consensus 246 ~l~y--~~Plstvaf~~~G----~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 246 RLTY--SHPLSTVAFSECG----TYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred eeee--cCCcceeeecCCc----eEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 6654 2468899999999 7887775 7889998764 456777788888855555
No 173
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=1.6e-11 Score=127.62 Aligned_cols=193 Identities=15% Similarity=0.236 Sum_probs=140.7
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCcceEEEEe------------ecCCCCCCCCCCeEEEEECCCC-CEEEEEEcCCcEEE
Q 003356 267 EQQILAVGTRRGVVELYDLAESASLIRTVSL------------YDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTV 333 (827)
Q Consensus 267 ~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~------------~~~~~~~~h~~~V~~l~~spDg-~~Lasg~~Dg~v~v 333 (827)
.|+++|+|+.|-.|.|||++--......+.. ++.....+|+.+|.+++|.-+- ..||||+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4789999999999999998742222221111 0011123699999999999864 48999999999999
Q ss_pred EeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCC----ceEEEEecCCcceEEEEec--cee
Q 003356 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG----YRLYAIEEGSSERVLIFSF--GKC 404 (827)
Q Consensus 334 Ws~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~----~~l~~~~~~~~~~v~~~~~--~~~ 404 (827)
||+.++++..++..| ...|+++.|+|..+ ..+++|+ ++.+.|.+. +.-|... +.... +.+.+ ...
T Consensus 271 WD~~~g~p~~s~~~~-~k~Vq~l~wh~~~p---~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-g~VEk-v~w~~~se~~ 344 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHH-GKKVQTLEWHPYEP---SVLLSGSYDGTVALKDCRDPSNSGKEWKFD-GEVEK-VAWDPHSENS 344 (463)
T ss_pred EEcCCCCcceehhhc-CCceeEEEecCCCc---eEEEeccccceEEeeeccCccccCceEEec-cceEE-EEecCCCcee
Confidence 999999999999866 67899999998763 6677887 666666552 2223221 21222 33333 556
Q ss_pred eeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCC-CCEEEEEeCCceE-EEEcCC
Q 003356 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 405 ~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Spd-G~~lavag~dg~i-iwd~~t 482 (827)
++.+..||+++..|+.+.++. .-+..+|+.+|.++++++. -..++++|.|+.+ +|++..
T Consensus 345 f~~~tddG~v~~~D~R~~~~~-------------------vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGKP-------------------VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EEEecCCceEEeeecCCCCCc-------------------eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 677788999999998877652 3467789999999999876 4578899999999 999865
Q ss_pred Ce
Q 003356 483 KK 484 (827)
Q Consensus 483 ~~ 484 (827)
..
T Consensus 406 ~~ 407 (463)
T KOG0270|consen 406 DS 407 (463)
T ss_pred CC
Confidence 43
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.34 E-value=2.7e-11 Score=124.60 Aligned_cols=128 Identities=16% Similarity=0.292 Sum_probs=102.3
Q ss_pred EEeCCc-EEEEeeccCccccceeeccce------------ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCC---
Q 003356 226 LYSNGQ-LMSCSVSKKGLKLAEFIKIDK------------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES--- 288 (827)
Q Consensus 226 ~s~dG~-~~~~~~~~~~~~~~~~~~~~~------------~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~--- 288 (827)
+..++. .++++..|..+++|....... +..|..++. +.|+|+|.+||+|+.+|+|.+|...+.
T Consensus 21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~ 100 (434)
T KOG1009|consen 21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF 100 (434)
T ss_pred eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc
Confidence 444444 788888899999998764321 146888998 999999999999999999999987620
Q ss_pred ---C-----c----ceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeee
Q 003356 289 ---A-----S----LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 356 (827)
Q Consensus 289 ---~-----~----~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~ 356 (827)
. . ..+.+.+ |...|..++|+||+.++++|+-|+.+++||+..|.+.+.+.+| ...++.+
T Consensus 101 ~~d~e~~~~ke~w~v~k~lr~--------h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~~yvqgv 171 (434)
T KOG1009|consen 101 DADTEADLNKEKWVVKKVLRG--------HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-EHYVQGV 171 (434)
T ss_pred cccchhhhCccceEEEEEecc--------cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-cccccee
Confidence 1 0 1123333 9999999999999999999999999999999999999999888 5667777
Q ss_pred eecCCC
Q 003356 357 IVKPNQ 362 (827)
Q Consensus 357 ~~sp~~ 362 (827)
++.|-.
T Consensus 172 awDpl~ 177 (434)
T KOG1009|consen 172 AWDPLN 177 (434)
T ss_pred ecchhh
Confidence 776655
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.33 E-value=5.5e-11 Score=119.17 Aligned_cols=210 Identities=13% Similarity=0.147 Sum_probs=147.9
Q ss_pred CCCcEE-EEEcCC----CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC-CCEEEEEEcCC
Q 003356 256 SGDAVC-ASIAPE----QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSR 329 (827)
Q Consensus 256 h~~~v~-va~sp~----~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD-g~~Lasg~~Dg 329 (827)
|..... ++|+-| ..++|.|+.-|.|+|.|+.. ++....+.+ |.+.|+.+.+.|+ .+++.+++.|.
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~~~~~g--------hG~sINeik~~p~~~qlvls~SkD~ 158 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCSKNYRG--------HGGSINEIKFHPDRPQLVLSASKDH 158 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-hhhccceec--------cCccchhhhcCCCCCcEEEEecCCc
Confidence 444443 666543 45899999999999999988 788888888 9999999999996 47999999999
Q ss_pred cEEEEeccCCeeEEEecc--ccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEe---------------
Q 003356 330 GLTVWSVSGCRLMSTIRQ--ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE--------------- 389 (827)
Q Consensus 330 ~v~vWs~~~~~l~~tl~~--~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~--------------- 389 (827)
+||+|++.+..+++.+.+ .+.+.|-|+.|++++ ..++++. ++++|.....+....+
T Consensus 159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g----d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pf 234 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG----DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPF 234 (385)
T ss_pred eEEEEeccCCeEEEEecccccccCcEEEEEEcCCC----CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcC
Confidence 999999999999998875 336789999999999 8888887 8999998743322111
Q ss_pred -------------cCCcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcE
Q 003356 390 -------------EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (827)
Q Consensus 390 -------------~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I 455 (827)
..|...|-+..| +..+++-|-++.+..|...+-++++--....+..... ...+.-.+..|
T Consensus 235 pt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti------~~~~~~~~c~i 308 (385)
T KOG1034|consen 235 PTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTI------LGEFDYPMCDI 308 (385)
T ss_pred CccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceee------eeEeccCccce
Confidence 113333334445 7778888888888888764433321100000000001 11222233445
Q ss_pred EEE--EEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 456 QHV--AASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 456 ~~v--a~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
+.+ +|+|-++.||.|++.|.+ +||+....
T Consensus 309 Wfirf~~d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 309 WFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred EEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence 555 456779999999999999 99997653
No 176
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=9.6e-10 Score=112.28 Aligned_cols=114 Identities=22% Similarity=0.305 Sum_probs=90.7
Q ss_pred CCCCcEE-EEEcCCCCEEEEE--ecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCc-
Q 003356 255 GSGDAVC-ASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG- 330 (827)
Q Consensus 255 ~h~~~v~-va~sp~~~lla~g--~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~- 330 (827)
.+...+| +++|+.+.++|.= ...|.|.|||+.+ -+.+..+.. |.+++.+++|+|||.+||++++.|+
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a--------H~~~lAalafs~~G~llATASeKGTV 197 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINA--------HKGPLAALAFSPDGTLLATASEKGTV 197 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEe--------cCCceeEEEECCCCCEEEEeccCceE
Confidence 4566677 8888888899963 2358999999988 777888888 9999999999999999999999997
Q ss_pred EEEEeccCCeeEEEeccc-cccceeeeeecCCCCCCccceeecc---eeEEEccC
Q 003356 331 LTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (827)
Q Consensus 331 v~vWs~~~~~l~~tl~~~-~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~ 381 (827)
|||+++..|+.+..++-+ -...+.+++|+|++ ..+...+ ++-++..+
T Consensus 198 IRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds----~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 198 IRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS----QFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEEEEcCCccEeeeeeCCceeeEEEEEEECCCC----CeEEEecCCCeEEEEEec
Confidence 699999999999888753 12468899999998 5554332 55555443
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.32 E-value=8.9e-09 Score=114.39 Aligned_cols=319 Identities=20% Similarity=0.270 Sum_probs=198.6
Q ss_pred cCcccEEEEcCCccEEEEEecCcEEEEEEEEecC-ceeecCCCCCCCceeeeEeeEeecccccccccceEEEe-ecCCCe
Q 003356 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE-KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDNKH 144 (827)
Q Consensus 67 ~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~~d~~~ 144 (827)
...+..+.+.+++..++.++.++.+.+|+..... .......... ....-... ..++..
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~ 124 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--------------------SSVSKLALSSPDGNS 124 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--------------------CceeeEEEECCCcce
Confidence 4667889999999999999999999999987543 1110100000 00000111 334443
Q ss_pred EEEE-ec-CCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcce
Q 003356 145 MLLG-LS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (827)
Q Consensus 145 llv~-t~-dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (827)
++.. +. ++.+..++....... . .....+...+..
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~-~----------------------------------~~~~~~~~~v~~--------- 160 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKL-I----------------------------------RTLEGHSESVTS--------- 160 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeE-E----------------------------------EEEecCcccEEE---------
Confidence 3333 33 677776554430000 0 011223333444
Q ss_pred EEEEEeCCcEEEEeec-cCccccceeeccce---ecCCCCcEE-EEEcCCCC-EEEEEecCCeEEEEEcCCCCcceE-EE
Q 003356 223 LFVLYSNGQLMSCSVS-KKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIR-TV 295 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~-~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~~~-lla~g~~dg~v~vw~~~~~~~~~~-~l 295 (827)
+.++++++.++.+.. ++.+++|+...... ..+|...+. ++++|++. .+++++.|++|++||... +.... .+
T Consensus 161 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~ 238 (466)
T COG2319 161 -LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTL 238 (466)
T ss_pred -EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeec
Confidence 447788877776664 78888998875322 256777777 99999998 666669999999998775 55555 45
Q ss_pred EeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee-EEEeccccccceeeeeecCCCCCCccceeecc-
Q 003356 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL-MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (827)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l-~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~- 373 (827)
.. |...+ ...|+|++..+++++.|+.+++|+...... ...+..| ...+.++.+.|++ ..++++.
T Consensus 239 ~~--------~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~~~~~~~ 304 (466)
T COG2319 239 SG--------HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH-SSSVLSVAFSPDG----KLLASGSS 304 (466)
T ss_pred CC--------CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC-CccEEEEEECCCC----CEEEEeeC
Confidence 55 77765 448999999999999999999999976553 4444344 6788999999965 5555443
Q ss_pred --eeEEEccCCceEEEEec--CCcceEEEEec--c-eeeeec-ccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeec
Q 003356 374 --SMMQWDEYGYRLYAIEE--GSSERVLIFSF--G-KCCLNR-GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (827)
Q Consensus 374 --~i~~W~~~~~~l~~~~~--~~~~~v~~~~~--~-~~~~s~-~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p 445 (827)
.+..|+..+........ .|...+..+.+ . ..+..+ ..|+.+..|+...... .
T Consensus 305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------~ 364 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP--------------------L 364 (466)
T ss_pred CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCce--------------------e
Confidence 57899887776655554 55554544433 1 233333 4556666665443331 0
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEE-EeCCceE-EEEcCCCeEEe
Q 003356 446 VSYISQNWPVQHVAASKDGMFLAV-AGLHGLI-LYDIRQKKWRV 487 (827)
Q Consensus 446 ~~~~~~~~~I~~va~SpdG~~lav-ag~dg~i-iwd~~t~~w~~ 487 (827)
...... ..+..+.+++ ...+.. ++.++.+ +|+........
T Consensus 365 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (466)
T COG2319 365 KTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLR 406 (466)
T ss_pred EEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeee
Confidence 111111 1178889988 544443 6888888 99998876543
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.32 E-value=3.7e-12 Score=140.87 Aligned_cols=224 Identities=15% Similarity=0.238 Sum_probs=164.4
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEe
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
.++++...|+.++++++|.-+|+|...+..++ .||+.-++ ++++.+..++|+++.|..|++|.+.+ +.++..+.+
T Consensus 194 yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvLrg 272 (1113)
T KOG0644|consen 194 YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVLRG 272 (1113)
T ss_pred eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-CchHHHHhc
Confidence 34668888999999999999999998887765 78998888 99999999999999999999999999 888888888
Q ss_pred ecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc--------------CCeeEEEeccccccceeeeeecCCCC
Q 003356 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--------------GCRLMSTIRQISLSSISSPIVKPNQD 363 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~--------------~~~l~~tl~~~~~~~v~s~~~sp~~~ 363 (827)
|+|+|++++|||-- +.+.||++++||.. ++.+++++..... .-....-+.+++
T Consensus 273 --------htgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~-~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 273 --------HTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN-GDRFLTGSRDGE 339 (1113)
T ss_pred --------cccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccc-ccccccccCCcc
Confidence 99999999999954 78899999999974 2222332221100 000000000000
Q ss_pred ----------C--Cccceeecc--------------eeEEEccCCceEEEEecCCcceEEEEec----ceeeeecccCCC
Q 003356 364 ----------C--KYEPLMSGT--------------SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGM 413 (827)
Q Consensus 364 ----------~--~~~~l~sg~--------------~i~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~ 413 (827)
+ +.-.+++++ ..+.|+..++++.....+|...++++++ .+...+++.||.
T Consensus 340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs 419 (1113)
T KOG0644|consen 340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS 419 (1113)
T ss_pred cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence 0 001111111 5678999999888888888888776665 566778999999
Q ss_pred eeeeEEEEcCCeEEEEecCCCCcceEEEeeeceee-ccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY-ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 414 ~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~-~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
..+|++..+.. .+.| ++ ...+...+||+||..++..-+-|.+ +...
T Consensus 420 t~iwdi~eg~p--------------------ik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 420 TIIWDIWEGIP--------------------IKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred eEeeecccCCc--------------------ceeeecc-cceeeccccCCCCceEecCCCCCceEEecc
Confidence 99999877654 2223 34 4567789999999999988888877 6654
No 179
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=7.4e-09 Score=116.74 Aligned_cols=288 Identities=11% Similarity=0.148 Sum_probs=160.2
Q ss_pred CCCC-cEEEEEcCCCCEEEEEecCCeEEEEEcCC---CCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCc
Q 003356 255 GSGD-AVCASIAPEQQILAVGTRRGVVELYDLAE---SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (827)
Q Consensus 255 ~h~~-~v~va~sp~~~lla~g~~dg~v~vw~~~~---~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~ 330 (827)
.|.. ..|+++||.++++|+|-.||.|.+|.--. .....+.++= |..+|.+++||+||.+|.+|+..+.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW--------H~~~V~~L~fS~~G~~LlSGG~E~V 274 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW--------HHDEVNSLSFSSDGAYLLSGGREGV 274 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe--------cccccceeEEecCCceEeecccceE
Confidence 3444 34599999999999999999999997432 1122345555 8899999999999999999999999
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceee--cc-eeEEEccCCceEEEEecC---C-------cce--
Q 003356 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS--GT-SMMQWDEYGYRLYAIEEG---S-------SER-- 395 (827)
Q Consensus 331 v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~s--g~-~i~~W~~~~~~l~~~~~~---~-------~~~-- 395 (827)
+.+|.+.+++ -.-|.-- .+.+..+.++||+ ..+.. +. .+.+-...+-+...+..+ . ...
T Consensus 275 Lv~Wq~~T~~-kqfLPRL-gs~I~~i~vS~ds----~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 275 LVLWQLETGK-KQFLPRL-GSPILHIVVSPDS----DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred EEEEeecCCC-ccccccc-CCeeEEEEEcCCC----CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 9999998876 2222222 3578899999988 32211 10 111111111111111111 0 111
Q ss_pred -EEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeC-
Q 003356 396 -VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL- 472 (827)
Q Consensus 396 -v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~- 472 (827)
.+.+++ .+.++-.+..+.++.+++.+... ++-+.-.+.. .-.....+.-.|++++.+-+|.+++++-.
T Consensus 349 t~~~idpr~~~~vln~~~g~vQ~ydl~td~~-i~~~~v~~~n--------~~~~~~n~~v~itav~~~~~gs~maT~E~~ 419 (792)
T KOG1963|consen 349 TGVSIDPRTNSLVLNGHPGHVQFYDLYTDST-IYKLQVCDEN--------YSDGDVNIQVGITAVARSRFGSWMATLEAR 419 (792)
T ss_pred eeEEEcCCCCceeecCCCceEEEEeccccce-eeeEEEEeec--------ccCCcceeEEeeeeehhhccceEEEEeeee
Confidence 255555 55666677788888888765443 1111100000 00011133446889999999999998743
Q ss_pred -------CceE---EE--EcCCCeEEeeC--CccceEEEEEEEEE--EeCCEEEEEEEeeCCCcEEEEEeeCC---CC-C
Q 003356 473 -------HGLI---LY--DIRQKKWRVFG--DITQEQKIQSKGLL--WLGKIIVVCNYIDSSNTYELLFYPRY---HL-D 532 (827)
Q Consensus 473 -------dg~i---iw--d~~t~~w~~f~--~~~~e~~~~v~gl~--W~~~~li~~~~~~~~~~~~lrly~~~---~l-~ 532 (827)
||.. .| +-.+..|.+-. +..|+..+.+..+. -..+..+.+ +.+..+++|... +. .
T Consensus 420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta-----~~dg~~KiW~~~~~~n~~k 494 (792)
T KOG1963|consen 420 IDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA-----SVDGDFKIWVFTDDSNIYK 494 (792)
T ss_pred ehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe-----ccCCeEEEEEEecccccCc
Confidence 3322 44 33455565532 22334433332211 112222222 233557777772 11 1
Q ss_pred cc------ceEEEEecCCccEEEEccCCEEEEEEcCceEEEEEEE
Q 003356 533 QS------SLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (827)
Q Consensus 533 ~~------~~~~~~~l~~~~~~l~~~~~~llV~~~~~~i~l~~~~ 571 (827)
.. .+.+=+..|.....++-.+..+.| ..+..|.+|++.
T Consensus 495 ~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~ 538 (792)
T KOG1963|consen 495 KSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYD 538 (792)
T ss_pred CccceEEeeeeccccCcccchhhcCCCcEEEE-ecCCEEEEecCC
Confidence 11 111112333334444445555555 456799999986
No 180
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.30 E-value=1.4e-10 Score=125.45 Aligned_cols=291 Identities=13% Similarity=0.121 Sum_probs=166.4
Q ss_pred EEEEecc---eEEEEE-ccCeEEEeecCCceeEEEEEEeC-hHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 003356 25 IYFKVNN---GLLLIA-SPCHIELWSSSQHKVRLGKYKRD-SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (827)
Q Consensus 25 v~fspdg---~lla~~-~~~~v~IW~~~~~~~~l~~~~r~-~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~ 99 (827)
..|++-- ..||++ .++.|.++|.. ...- ..-+|. .+-+.+++.+.++.|-|....|++++.|.++++||+..+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~-~~~f-r~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTK-SIVF-RLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecch-hhhc-chhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 4565543 268888 46789999985 2211 111121 122457899999999997778899999999999999754
Q ss_pred CceeecCCCCCCCceeeeEeeEeecccccccccceEE--EeecCC-CeEEEEecCCcEEEEecCCccCccee-ecccCCC
Q 003356 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFE-LVHSSND 175 (827)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~d~-~~llv~t~dg~i~~~~w~~~~~~~~~-l~~~p~~ 175 (827)
.. .+...+.++.++|. |+.+++ .-+..|..||.+.+|+..-....... .+-.--.
T Consensus 133 ~l---------------------~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~ 191 (720)
T KOG0321|consen 133 RL---------------------VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYG 191 (720)
T ss_pred ee---------------------ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhc
Confidence 31 11112344555554 445544 45677889999988655433211110 0000000
Q ss_pred CcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeec-cCccccceeecccee-
Q 003356 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE- 253 (827)
Q Consensus 176 ~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-~~~~~~~~~~~~~~~- 253 (827)
.+ +..| ...+... ..++.+ +.+...|.+ ...+.+.-|...+++++. |+++++||+......
T Consensus 192 ~~--n~~p--tpskp~~-----kr~~k~-kA~s~ti~s-------svTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 192 RH--NTAP--TPSKPLK-----KRIRKW-KAASNTIFS-------SVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred cc--cCCC--CCCchhh-----cccccc-ccccCceee-------eeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 00 0000 0000000 000011 111222221 122556788888888776 999999998765332
Q ss_pred ----------cCCC----CcEEEEEcCCCCEEEEEecCCeEEEEEcCCCC-cceEEEEeecCCCCCCCCCCeEEEEECCC
Q 003356 254 ----------LGSG----DAVCASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPD 318 (827)
Q Consensus 254 ----------~~h~----~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~-~~~~~l~~~~~~~~~~h~~~V~~l~~spD 318 (827)
.-|. +.+++.....|.+|...|.|++|..|++.... ..+..+.+... .+-.|.+ ..|||
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~-----~sf~vks-~lSpd 328 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLN-----SSFYVKS-ELSPD 328 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCccc-----ceeeeee-ecCCC
Confidence 1121 23456666667877777789999999998632 22223333100 1222333 46899
Q ss_pred CCEEEEEEcCCcEEEEeccCCeeE-EEeccccccceeeeeecCCC
Q 003356 319 NSAFAVGWKSRGLTVWSVSGCRLM-STIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 319 g~~Lasg~~Dg~v~vWs~~~~~l~-~tl~~~~~~~v~s~~~sp~~ 362 (827)
|++|++|+.|....+|.+.....- ..+.+| +-.|+++++.|..
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Gh-t~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGH-TREVTTVRWLPSA 372 (720)
T ss_pred CceEeccCCCcceeeeeecCccCChhhhhCc-ceEEEEEeecccc
Confidence 999999999999999999876542 233444 5567777776654
No 181
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.30 E-value=7e-10 Score=111.17 Aligned_cols=233 Identities=12% Similarity=0.266 Sum_probs=138.8
Q ss_pred EEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcC-cccEEEEcCCccEEEEEecC-------cEEEEEEE
Q 003356 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTSS-------LYLHIFKV 96 (827)
Q Consensus 25 v~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G-~~~~v~wSPDg~~lav~t~d-------g~l~l~~v 96 (827)
++|+-|-.-||+++++..+||+.+ |-.... .|. ...-| .++.+.|. .++||..+.. +.|.|||=
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~-P~ke~~--~r~---~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCD-PFKESA--SRQ---FIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred EEEccCCceEEEEecCceEEEecC-chhhhh--hhc---cccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEec
Confidence 889999999999999999999996 722111 111 11112 12334454 3456654422 46788882
Q ss_pred EecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCC
Q 003356 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (827)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~ 176 (827)
... -++..+++ ..+|.++...+++|++... +.|.+|....+......++
T Consensus 83 ~k~-------------~~i~el~f-----------~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~e------ 131 (346)
T KOG2111|consen 83 LKE-------------RCIIELSF-----------NSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIE------ 131 (346)
T ss_pred ccC-------------cEEEEEEe-----------ccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeee------
Confidence 111 12221211 2356677778888888765 4566766653322111100
Q ss_pred cccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecc-----c
Q 003356 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-----D 251 (827)
Q Consensus 177 ~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~-----~ 251 (827)
+...+++ +. ++++..+..+.+.|. ...|.+++-+.... .
T Consensus 132 -------------------------t~~NPkG--lC--~~~~~~~k~~LafPg-------~k~GqvQi~dL~~~~~~~p~ 175 (346)
T KOG2111|consen 132 -------------------------TRSNPKG--LC--SLCPTSNKSLLAFPG-------FKTGQVQIVDLASTKPNAPS 175 (346)
T ss_pred -------------------------cccCCCc--eE--eecCCCCceEEEcCC-------CccceEEEEEhhhcCcCCce
Confidence 0000111 11 122222222222222 12234444333221 2
Q ss_pred eecCCCCcEE-EEEcCCCCEEEEEecCCe-EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC
Q 003356 252 KELGSGDAVC-ASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (827)
Q Consensus 252 ~~~~h~~~v~-va~sp~~~lla~g~~dg~-v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg 329 (827)
....|...+. ++.|-+|.++|+++..|| |||||..+ +..+..++... ....|.||+||||+.+||++++.|
T Consensus 176 ~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~------d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 176 IINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGV------DRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred EEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCC------chheEEEEEeCCCccEEEEEcCCC
Confidence 2367887775 999999999999999997 69999998 77777665411 345699999999999999999999
Q ss_pred cEEEEeccCC
Q 003356 330 GLTVWSVSGC 339 (827)
Q Consensus 330 ~v~vWs~~~~ 339 (827)
|+.|+.+...
T Consensus 249 TlHiF~l~~~ 258 (346)
T KOG2111|consen 249 TLHIFSLRDT 258 (346)
T ss_pred eEEEEEeecC
Confidence 9999998764
No 182
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=5.3e-12 Score=145.17 Aligned_cols=223 Identities=17% Similarity=0.202 Sum_probs=152.3
Q ss_pred EEEEEecCCeEEEEEcCCC--C---cceEEEEeecCCCCCCCCCCeEEEEECCCCC-EEEEEEcCCcEEEEeccCCeeEE
Q 003356 270 ILAVGTRRGVVELYDLAES--A---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMS 343 (827)
Q Consensus 270 lla~g~~dg~v~vw~~~~~--~---~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~-~Lasg~~Dg~v~vWs~~~~~l~~ 343 (827)
+||.|..||.|.+||...- + ..+.+.+. |+|+|..+.|++.+. +||+|+.||.|.|||+..-..-.
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~--------h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSK--------HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcc--------cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC
Confidence 6999999999999998651 1 12334444 999999999999655 99999999999999997533222
Q ss_pred Eec-cccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcce----EEEEec--ceeeeecccCC-
Q 003356 344 TIR-QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSER----VLIFSF--GKCCLNRGVSG- 412 (827)
Q Consensus 344 tl~-~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~----v~~~~~--~~~~~s~~~d~- 412 (827)
+.. ....+.|.+++|+..- ...+++++ ...+||.+..+.+..+..+..+ ++.+.+ ...++.++.|.
T Consensus 154 ~~~~~~~~~eI~~lsWNrkv---qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~ 230 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRKV---SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS 230 (1049)
T ss_pred CCCCCCCcccceEeccchhh---hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC
Confidence 221 1124568888886532 14566665 7899999988766555544432 344555 45555555443
Q ss_pred --CeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCC-CEEEEEeCCceE-EEEcCCCeEEee
Q 003356 413 --MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVF 488 (827)
Q Consensus 413 --~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG-~~lavag~dg~i-iwd~~t~~w~~f 488 (827)
.+.+||+...... .+.|.+|+.-|.++.|.+.+ +++++.|+|+.+ +||.+|++- .
T Consensus 231 ~PviqlWDlR~assP-------------------~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv--l 289 (1049)
T KOG0307|consen 231 APVIQLWDLRFASSP-------------------LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV--L 289 (1049)
T ss_pred CceeEeecccccCCc-------------------hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE--e
Confidence 5888998887762 24567999999999999876 999999999999 999999862 1
Q ss_pred CCccceEEEEEEEEEEeCC--EEEEEEEeeCCCcEEEEEeeCC
Q 003356 489 GDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 489 ~~~~~e~~~~v~gl~W~~~--~li~~~~~~~~~~~~lrly~~~ 529 (827)
+... .+.--+..+.|... .++++.+.+ ..+.+|+..
T Consensus 290 ~~~p-~~~nW~fdv~w~pr~P~~~A~asfd----gkI~I~sl~ 327 (1049)
T KOG0307|consen 290 GELP-AQGNWCFDVQWCPRNPSVMAAASFD----GKISIYSLQ 327 (1049)
T ss_pred eecC-CCCcceeeeeecCCCcchhhhheec----cceeeeeee
Confidence 1111 11112567788743 355554433 456777775
No 183
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.1e-10 Score=131.69 Aligned_cols=233 Identities=13% Similarity=0.078 Sum_probs=141.7
Q ss_pred CeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecC---cEEEEEEEEecCceeecCCCCCCCceee
Q 003356 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (827)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~d---g~l~l~~v~~~~~~~~~~~~~~~~~~~~ 116 (827)
.+|.|||.+ .... ..+.+ ..+.+.+.+|||||+.||.++.+ ..|.+|++..+......
T Consensus 184 ~~i~i~d~d-g~~~-~~lt~------~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~----------- 244 (429)
T PRK01742 184 YEVRVADYD-GFNQ-FIVNR------SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA----------- 244 (429)
T ss_pred EEEEEECCC-CCCc-eEecc------CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------
Confidence 579999985 3221 11111 22457889999999999988754 36889998644321111
Q ss_pred eEeeEeecccccccccceEEEeecCCCeEEEEe-cCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCcccccc
Q 003356 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (827)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t-~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~ 195 (827)
.+.+... ..++++|++.|+++. .+|...+|.|+........+
T Consensus 245 ----------~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l-------------------------- 287 (429)
T PRK01742 245 ----------SFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL-------------------------- 287 (429)
T ss_pred ----------cCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee--------------------------
Confidence 0111111 236788999888875 57877777666432211100
Q ss_pred CCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeec-cCccccceeeccc---eecCCCCcEEEEEcCCCCEE
Q 003356 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKID---KELGSGDAVCASIAPEQQIL 271 (827)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-~~~~~~~~~~~~~---~~~~h~~~v~va~sp~~~ll 271 (827)
......+ ....++|||+.++..++ ++..++|...... ...++.. .+.+|+|||+.|
T Consensus 288 ---------t~~~~~~----------~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~i 347 (429)
T PRK01742 288 ---------TSGAGNN----------TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTL 347 (429)
T ss_pred ---------ccCCCCc----------CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEE
Confidence 0011111 22457888886665553 5566777653211 1123333 347899999999
Q ss_pred EEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc--CCeeEEEecccc
Q 003356 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--GCRLMSTIRQIS 349 (827)
Q Consensus 272 a~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~--~~~l~~tl~~~~ 349 (827)
++++.++.+ +||+.+ +.... +.. + ....+++|+|||+.|+.++.+++..+|.+. .+....++..+
T Consensus 348 a~~~~~~i~-~~Dl~~-g~~~~-lt~--------~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~- 414 (429)
T PRK01742 348 VMINGDNVV-KQDLTS-GSTEV-LSS--------T-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS- 414 (429)
T ss_pred EEEcCCCEE-EEECCC-CCeEE-ecC--------C-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC-
Confidence 998877654 589876 44322 221 1 123567899999999999999999988763 45667777665
Q ss_pred ccceeeeeecCC
Q 003356 350 LSSISSPIVKPN 361 (827)
Q Consensus 350 ~~~v~s~~~sp~ 361 (827)
...+..++|+|-
T Consensus 415 ~g~~~~p~wsp~ 426 (429)
T PRK01742 415 DGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCcccCCC
Confidence 455777888774
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.29 E-value=8.4e-11 Score=114.54 Aligned_cols=266 Identities=16% Similarity=0.198 Sum_probs=162.2
Q ss_pred CceEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCc--ccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 003356 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGE--NLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (827)
Q Consensus 21 ~~~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~--~~~v~wSPDg~~lav~t~dg~l~l~~v~~ 98 (827)
....+.|-.+++++.-...+.|.+|.. +. +|..-.++.+|. ++.+.--|+ ..+.+...|+.|.+|++..
T Consensus 16 ~v~s~~fqa~~rL~sg~~~G~V~~w~l-qt-------~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 16 SVTSVLFQANERLMSGLSVGIVKMWVL-QT-------ERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred hheehhhccchhhhcccccceEEEEEe-ec-------CccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 345567888888877667899999998 33 344433443443 445566676 6788888999999999976
Q ss_pred cCc-----------ee----ecCCCCCC---------Ccee---ee----Eee-EeecccccccccceEEEeecC---CC
Q 003356 99 TEK-----------SI----QIGGKQPS---------GLFF---IK----ISL-VLNEQLPFAEKGLSVSNIVSD---NK 143 (827)
Q Consensus 99 ~~~-----------~~----~~~~~~~~---------~~~~---~~----~~l-~~~~~~~~~~~~~~v~~~~~d---~~ 143 (827)
+.- .+ +....... +... .+ ... -.+. .-..+.++++|...+ +.
T Consensus 87 s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd--~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 87 SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD--SERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc--hhccccCceeeeeccccccc
Confidence 331 00 00011100 0000 00 000 0000 012345567776522 22
Q ss_pred --eEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcc
Q 003356 144 --HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (827)
Q Consensus 144 --~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (827)
.+++|-.+|.+..|+...+ . ..+. +|..... ......++.++.+++|.+..+
T Consensus 165 ~~lllaGyEsghvv~wd~S~~--~-~~~~-~~~~~kv----------------------~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTG--D-KIIQ-LPQSSKV----------------------ESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred eEEEEEeccCCeEEEEEccCC--c-eeec-ccccccc----------------------ccchhhccCcceeeeechhhc
Confidence 3556667888877544322 1 1110 1111000 012345677899999887765
Q ss_pred eEEEEEeCCcEEEEeeccCc--cccceeeccceecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEee
Q 003356 222 LLFVLYSNGQLMSCSVSKKG--LKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~ 298 (827)
.-+...++.++...+.++.+ ..+-.... ..|. .+. +.+-||++.+|+++.|+.||||+.++ ...+..++-
T Consensus 219 rGisgga~dkl~~~Sl~~s~gslq~~~e~~----lknp-Gv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLky- 291 (323)
T KOG0322|consen 219 RGISGGADDKLVMYSLNHSTGSLQIRKEIT----LKNP-GVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKY- 291 (323)
T ss_pred CCcCCCccccceeeeeccccCcccccceEE----ecCC-CccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhh-
Confidence 54555566666555444321 11111111 1222 334 88899999999999999999999998 788888877
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
|.+.|.+++|+||...+|+++.|+.|.+|+++
T Consensus 292 -------Hsagvn~vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 292 -------HSAGVNAVAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred -------hhcceeEEEeCCCCchhhhccCCceEEeeecC
Confidence 99999999999999999999999999999864
No 185
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.27 E-value=8.7e-10 Score=127.39 Aligned_cols=217 Identities=13% Similarity=0.149 Sum_probs=127.4
Q ss_pred cEEE-EcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEE--EeecCCCeEEE
Q 003356 71 LQAV-WSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLL 147 (827)
Q Consensus 71 ~~v~-wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~d~~~llv 147 (827)
..++ -+|+++++++++.||+|++|+...-.. +.. ..+-.........++. .+...++.+++
T Consensus 1052 ~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~------~~~----------s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1052 IKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG------EGG----------SARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred cceeecCCCCceEEEecCCceEEEeeehhhhc------Ccc----------eeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 3544 456669999999999999999863221 000 0000011111223333 34556789999
Q ss_pred EecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEE
Q 003356 148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY 227 (827)
Q Consensus 148 ~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s 227 (827)
+++||.|++.+.+-....... ..+.++....+.+.+++|.....
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~----------------------------~~~~ri~n~~~~g~vv~m~a~~~-------- 1159 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRV----------------------------ATQVRIPNLKKDGVVVSMHAFTA-------- 1159 (1431)
T ss_pred EcCCCeEEEEEccccccccce----------------------------eeeeecccccCCCceEEeecccc--------
Confidence 999999998877642111110 01112333444556777752222
Q ss_pred eCCc-EEEEeeccCccccceeeccce------ecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecC
Q 003356 228 SNGQ-LMSCSVSKKGLKLAEFIKIDK------ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (827)
Q Consensus 228 ~dG~-~~~~~~~~~~~~~~~~~~~~~------~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~ 300 (827)
-++. .++.+..-+.+-.||...... -..|+-.+.++++|-+.++++|+..|.+.+||++- ..++..++-.
T Consensus 1160 ~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P-- 1236 (1431)
T KOG1240|consen 1160 IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHP-- 1236 (1431)
T ss_pred cccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCc--
Confidence 1222 333333333444555443211 13455555599999999999999999999999987 5555554431
Q ss_pred CCCCCCCCCeEEEEECC---CCCEEEEE-E-cCCcEEEEeccCCeeEEEecc
Q 003356 301 GYSMDDTGPVSCIAWTP---DNSAFAVG-W-KSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 301 ~~~~~h~~~V~~l~~sp---Dg~~Lasg-~-~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
+..++..+...| .....+++ + ..+.|.+|++.+|.+..++..
T Consensus 1237 -----~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1237 -----ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred -----ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence 345666655554 33555444 4 578999999999876666643
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=4.1e-10 Score=127.95 Aligned_cols=297 Identities=12% Similarity=0.120 Sum_probs=165.3
Q ss_pred cEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec
Q 003356 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS 150 (827)
Q Consensus 71 ~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~ 150 (827)
..+.|+|=...++++...-.+++||-+.+.....+.......-.+.++++ +. .-|...+++|+.
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~l-------iN---------e~D~aLlLtas~ 1131 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLEL-------IN---------EQDDALLLTASS 1131 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeee-------ec---------ccchhheeeecc
Confidence 45779999999999988889999998766532222111111111222211 00 123457899999
Q ss_pred CCcEEEEecCCccC--cceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEe
Q 003356 151 DGSLYSISWKGEFY--GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS 228 (827)
Q Consensus 151 dg~i~~~~w~~~~~--~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~ 228 (827)
||.|++| +.-.. ...++. ..| ++..+++.... ..+.++ -|--.
T Consensus 1132 dGvIRIw--k~y~~~~~~~eLV--------Taw--~~Ls~~~~~~r------------~~~~v~-----------dWqQ~ 1176 (1387)
T KOG1517|consen 1132 DGVIRIW--KDYADKWKKPELV--------TAW--SSLSDQLPGAR------------GTGLVV-----------DWQQQ 1176 (1387)
T ss_pred CceEEEe--cccccccCCceeE--------Eee--ccccccCccCC------------CCCeee-----------ehhhh
Confidence 9999984 43222 111111 001 00011100000 011111 12223
Q ss_pred CCcEEEEeeccCccccceeeccceecC--CCCcEE-EEEcC---CCCEEEEEecCCeEEEEEcCCCCc--ceEEEEeecC
Q 003356 229 NGQLMSCSVSKKGLKLAEFIKIDKELG--SGDAVC-ASIAP---EQQILAVGTRRGVVELYDLAESAS--LIRTVSLYDW 300 (827)
Q Consensus 229 dG~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~-va~sp---~~~lla~g~~dg~v~vw~~~~~~~--~~~~l~~~~~ 300 (827)
.|.++++| +...+++||......... -+...+ .+.++ .|+.||.|..||.||+||...... .+...+.
T Consensus 1177 ~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~--- 1252 (1387)
T KOG1517|consen 1177 SGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE--- 1252 (1387)
T ss_pred CCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc---
Confidence 45555543 456788999876554311 112222 33333 489999999999999999876322 4455555
Q ss_pred CCCCCCCCC--eEEEEECCCCCE-EEEEEcCCcEEEEeccCCeeEEEe--ccccc--cceeeeeecCCCCCCccceeecc
Q 003356 301 GYSMDDTGP--VSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTI--RQISL--SSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 301 ~~~~~h~~~--V~~l~~spDg~~-Lasg~~Dg~v~vWs~~~~~l~~tl--~~~~~--~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
|+.. |..+.+-+.|.. |++|+.||.|++||+........+ ..|-. +..+++..++.. ..+
T Consensus 1253 -----h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ha----pii---- 1319 (1387)
T KOG1517|consen 1253 -----HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHA----PII---- 1319 (1387)
T ss_pred -----cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCC----Cee----
Confidence 7766 999999997775 999999999999999764211111 11100 013333333333 333
Q ss_pred eeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeecc-CC
Q 003356 374 SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-QN 452 (827)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~-~~ 452 (827)
++|+. +.+++|++......++.+. ..+.+ ..
T Consensus 1320 --------------------------------AsGs~-q~ikIy~~~G~~l~~~k~n---------------~~F~~q~~ 1351 (1387)
T KOG1517|consen 1320 --------------------------------ASGSA-QLIKIYSLSGEQLNIIKYN---------------PGFMGQRI 1351 (1387)
T ss_pred --------------------------------eecCc-ceEEEEecChhhhcccccC---------------cccccCcC
Confidence 34444 4445554433222111111 11221 22
Q ss_pred CcEEEEEEcCCCCEEEEEeCCceE-EEEcCCC
Q 003356 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 453 ~~I~~va~SpdG~~lavag~dg~i-iwd~~t~ 483 (827)
+.+.|++|+|--..+|+|+.|.++ +|....+
T Consensus 1352 gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1352 GSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred CCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 356899999999999999999999 9987654
No 187
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.25 E-value=3.7e-11 Score=127.42 Aligned_cols=145 Identities=19% Similarity=0.323 Sum_probs=108.2
Q ss_pred cccEEEEEEcCCc-ceEEEEEeCCcEEEEee-----cc-C---ccccce---eecc---------ceecCCCCcEE-EEE
Q 003356 208 SSAIIWLELCLPM-RLLFVLYSNGQLMSCSV-----SK-K---GLKLAE---FIKI---------DKELGSGDAVC-ASI 264 (827)
Q Consensus 208 ~~~i~~i~~~~~~-~~~~~~s~dG~~~~~~~-----~~-~---~~~~~~---~~~~---------~~~~~h~~~v~-va~ 264 (827)
++.+++++|-+.. ..+++...+|.+++-.. .. - -++..+ ..+. .+|.--..++. .+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4678888888766 57777888888777511 00 0 000000 0000 01211234566 899
Q ss_pred cCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEE
Q 003356 265 APEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 344 (827)
Q Consensus 265 sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~t 344 (827)
+|||++||+.+.||.+||||.++ .+++...+. .-|...||+|||||++|++|++|--|.||++..++.++.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkS--------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDT-QELLGVMKS--------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred cCCCceEEEEecCceEEEeeccH-HHHHHHHHh--------hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 99999999999999999999987 665555555 567899999999999999999999999999999999998
Q ss_pred eccccccceeeeeecCCC
Q 003356 345 IRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 345 l~~~~~~~v~s~~~sp~~ 362 (827)
-++| .++|+.++|.|--
T Consensus 370 GqGH-kSWVs~VaFDpyt 386 (636)
T KOG2394|consen 370 GQGH-KSWVSVVAFDPYT 386 (636)
T ss_pred cccc-ccceeeEeecccc
Confidence 8888 8999999998743
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.24 E-value=7.4e-09 Score=112.92 Aligned_cols=268 Identities=14% Similarity=0.168 Sum_probs=150.4
Q ss_pred EEEEeeccCccccceeeccce------ecCCCCcEEEEEcCCCCEEEEEe-cCCeEEEEEcCCCCcceEEEEeecCCCCC
Q 003356 232 LMSCSVSKKGLKLAEFIKIDK------ELGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSM 304 (827)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~------~~~h~~~v~va~sp~~~lla~g~-~dg~v~vw~~~~~~~~~~~l~~~~~~~~~ 304 (827)
+|++...++++.+|+...... ......+..++++|++++|++++ .++.|.+|++++.+. +.......
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~~~~~----- 77 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFAAESP----- 77 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEeeeec-----
Confidence 344445566666666642111 11123345589999999887765 578999999974233 22222111
Q ss_pred CCCCCeEEEEECCCCCEEEEEE-cCCcEEEEeccC-Ce---eEEEeccccccceeeeeecCCCCCCccceee-c---cee
Q 003356 305 DDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSG-CR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMS-G---TSM 375 (827)
Q Consensus 305 ~h~~~V~~l~~spDg~~Lasg~-~Dg~v~vWs~~~-~~---l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~s-g---~~i 375 (827)
..+....++|+|||+.|+++. .++.|.+|++.. +. ....+.+ ......++++|++ +.+.. . ..+
T Consensus 78 -~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g----~~l~v~~~~~~~v 150 (330)
T PRK11028 78 -LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDN----RTLWVPCLKEDRI 150 (330)
T ss_pred -CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCC----CEEEEeeCCCCEE
Confidence 234567899999999888775 478999999963 22 2222222 1234567789987 55532 2 278
Q ss_pred EEEccCCceEEE--------EecCCcceEEEEec-ceeeeeccc-CCCeeeeEEEEcCCeEEEEecCCCCcceEEEe-ee
Q 003356 376 MQWDEYGYRLYA--------IEEGSSERVLIFSF-GKCCLNRGV-SGMTYARQVIYGEDRLLVVQSEDTDELKILHL-NL 444 (827)
Q Consensus 376 ~~W~~~~~~l~~--------~~~~~~~~v~~~~~-~~~~~s~~~-d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~-~~ 444 (827)
.+|+..+...+. ...+...+-..|++ ++.+...+. ++++.+|++......+. ..+.+ ..
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~----------~~~~~~~~ 220 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE----------CVQTLDMM 220 (330)
T ss_pred EEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE----------EEEEEecC
Confidence 889886532221 11122222356666 666655544 78888888764322111 11111 12
Q ss_pred ceeeccCCCcEEEEEEcCCCCEEEEEeC-CceE-EEEcCC--CeEEeeCCccceEEEEEEEEEEe--CCEEEEEEEeeCC
Q 003356 445 PVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQ--KKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSS 518 (827)
Q Consensus 445 p~~~~~~~~~I~~va~SpdG~~lavag~-dg~i-iwd~~t--~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~~~~~~~ 518 (827)
|..+.+..++ ..++++|||++++++.+ ++.+ +|++.+ ++++..+...-+ ...+++.+. +..+++++.
T Consensus 221 p~~~~~~~~~-~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~---- 293 (330)
T PRK11028 221 PADFSDTRWA-ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQ---- 293 (330)
T ss_pred CCcCCCCccc-eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEc----
Confidence 3332222233 46899999999999965 5777 999854 344433211100 012345554 667777632
Q ss_pred CcEEEEEeeCC
Q 003356 519 NTYELLFYPRY 529 (827)
Q Consensus 519 ~~~~lrly~~~ 529 (827)
....+.+|..+
T Consensus 294 ~~~~v~v~~~~ 304 (330)
T PRK11028 294 KSHHISVYEID 304 (330)
T ss_pred cCCcEEEEEEc
Confidence 23467788764
No 189
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.24 E-value=4.5e-09 Score=105.49 Aligned_cols=219 Identities=17% Similarity=0.158 Sum_probs=125.0
Q ss_pred ceEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEE-EecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAV-VTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav-~t~dg~l~l~~v~~~~ 100 (827)
.+..+|||+|+++|++++.++.|-|.+ .. ++..+- .--..+.-+.|+-|+-.+.. ...++.|.+|++....
T Consensus 11 ~~~c~fSp~g~yiAs~~~yrlviRd~~-tl-q~~qlf------~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 11 NPFCSFSPCGNYIASLSRYRLVIRDSE-TL-QLHQLF------LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE 82 (447)
T ss_pred CCceeECCCCCeeeeeeeeEEEEeccc-hh-hHHHHH------HHHHHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence 445689999999999999999999885 21 111110 01244567899999987555 5677799999996221
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec-CCcEEEEecCCccCcceeecccCCCCccc
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~-dg~i~~~~w~~~~~~~~~l~~~p~~~~~i 179 (827)
|-- ++.+ +....+..+.++||..|+..+. +-.|.+|+...+.. .
T Consensus 83 ---------------w~c--kIde----g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--~------------ 127 (447)
T KOG4497|consen 83 ---------------WYC--KIDE----GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--Y------------ 127 (447)
T ss_pred ---------------eEE--Eecc----CCCcceeeeECCCcceEeeeecceeEEEEEEecccee--E------------
Confidence 111 1111 1111233466888877776553 55555544432211 1
Q ss_pred ceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccc--------cceeeccc
Q 003356 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK--------LAEFIKID 251 (827)
Q Consensus 180 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~--------~~~~~~~~ 251 (827)
.+...+..+ ...++.+||+..+......... .|.....-
T Consensus 128 -----------------------~~~~pK~~~----------kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f 174 (447)
T KOG4497|consen 128 -----------------------LLPHPKTNV----------KGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEF 174 (447)
T ss_pred -----------------------EecccccCc----------eeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhc
Confidence 001111122 2255888999887766542221 22221110
Q ss_pred eecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 252 KELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 252 ~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
. ...-+.+-+.|+|||..||+ ||--- .-.+...+ ..-.+..++|||.|++||+|+.|+.+
T Consensus 175 ~-~dT~DltgieWsPdg~~laV---------wd~~L-eykv~aYe---------~~lG~k~v~wsP~~qflavGsyD~~l 234 (447)
T KOG4497|consen 175 K-LDTIDLTGIEWSPDGNWLAV---------WDNVL-EYKVYAYE---------RGLGLKFVEWSPCNQFLAVGSYDQML 234 (447)
T ss_pred C-CCcccccCceECCCCcEEEE---------ecchh-hheeeeee---------eccceeEEEeccccceEEeeccchhh
Confidence 0 11123333899999988875 44211 00011111 12358999999999999999999999
Q ss_pred EEEec
Q 003356 332 TVWSV 336 (827)
Q Consensus 332 ~vWs~ 336 (827)
||-+-
T Consensus 235 rvlnh 239 (447)
T KOG4497|consen 235 RVLNH 239 (447)
T ss_pred hhhce
Confidence 88543
No 190
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=7.8e-10 Score=111.71 Aligned_cols=191 Identities=14% Similarity=0.191 Sum_probs=118.5
Q ss_pred cEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeec-CCCeEEEEecCCcEEEEe
Q 003356 80 KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSIS 158 (827)
Q Consensus 80 ~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-d~~~llv~t~dg~i~~~~ 158 (827)
+.+||+-+.|.+++||..+++......++ ......|.-+.+ .+..+++|+.||+|+.|
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~--------------------~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w- 99 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP--------------------PATTNGVRFISCDSPHGVISCSSDGTVRLW- 99 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCC--------------------CCcccceEEecCCCCCeeEEeccCCeEEEE-
Confidence 57899999999999998764321111111 111112222233 34789999999999984
Q ss_pred cCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCC-cccEEEEEEcCCcceEEEEEeCCcEEEEee
Q 003356 159 WKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI-SSAIIWLELCLPMRLLFVLYSNGQLMSCSV 237 (827)
Q Consensus 159 w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~ 237 (827)
|.....+.. .+ .+... ..+..+++ ....+++++++.
T Consensus 100 -D~Rs~~e~a---------~~-----------------------~~~~~~~~~f~~ld----------~nck~~ii~~Gt 136 (376)
T KOG1188|consen 100 -DIRSQAESA---------RI-----------------------SWTQQSGTPFICLD----------LNCKKNIIACGT 136 (376)
T ss_pred -Eeecchhhh---------he-----------------------eccCCCCCcceEee----------ccCcCCeEEecc
Confidence 433222110 00 00111 12233322 233556666554
Q ss_pred c----cCccccceeecccee-----cCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEcCCCCc---ceEEEEeecCCCC
Q 003356 238 S----KKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESAS---LIRTVSLYDWGYS 303 (827)
Q Consensus 238 ~----~~~~~~~~~~~~~~~-----~~h~~~v~-va~sp~-~~lla~g~~dg~v~vw~~~~~~~---~~~~l~~~~~~~~ 303 (827)
. +..+.+||....++. ..|.+-|+ +.|+|. -.+|++|+.||-|.|||+....+ +..++
T Consensus 137 E~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-------- 208 (376)
T KOG1188|consen 137 ELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-------- 208 (376)
T ss_pred ccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh--------
Confidence 3 334567888766552 34666555 999995 57999999999999999976322 22232
Q ss_pred CCCCCCeEEEEECCCCC-EEEEEEcCCcEEEEeccCCeeEE
Q 003356 304 MDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMS 343 (827)
Q Consensus 304 ~~h~~~V~~l~~spDg~-~Lasg~~Dg~v~vWs~~~~~l~~ 343 (827)
+|...|.++.|..+++ .|..-....+.++|+...+....
T Consensus 209 -N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 209 -NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred -cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 2677899999999984 57777788999999998776443
No 191
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.19 E-value=2.9e-09 Score=105.16 Aligned_cols=216 Identities=18% Similarity=0.211 Sum_probs=154.2
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC--CCCEEEEEEcCCcEEE
Q 003356 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTV 333 (827)
Q Consensus 256 h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--Dg~~Lasg~~Dg~v~v 333 (827)
+...-|+.|.|++..+|+-. |..|.+|+++...+....+.. +.+.+|....++-+||| ||+.+++.++ ++++.
T Consensus 123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s---s~s~e~~~~ftsg~WspHHdgnqv~tt~d-~tl~~ 197 (370)
T KOG1007|consen 123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS---SESAEMRHSFTSGAWSPHHDGNQVATTSD-STLQF 197 (370)
T ss_pred hCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc---cccccccceecccccCCCCccceEEEeCC-CcEEE
Confidence 44455799999999988765 889999999883332333322 12334667788999999 8999998876 99999
Q ss_pred EeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCc-eEEEEecCCcceEEEEec----ceee
Q 003356 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF----GKCC 405 (827)
Q Consensus 334 Ws~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~-~l~~~~~~~~~~v~~~~~----~~~~ 405 (827)
||+.+..+...++..+-..|..+.|+|+. ...++++. .+++||.+.. ..+..+.+|.-.+|++.| ...+
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnk---q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNK---QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCc---eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 99998888878776445678999999986 23455654 8999998754 456777899999999888 5678
Q ss_pred eecccCCCeeeeEEEEcCCeEEEEecCCCCcc-------eEEEee--eceeeccCCCcEEEEEEcCCCC-EEEEEeCCce
Q 003356 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL-------KILHLN--LPVSYISQNWPVQHVAASKDGM-FLAVAGLHGL 475 (827)
Q Consensus 406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~-------~w~~~~--~p~~~~~~~~~I~~va~SpdG~-~lavag~dg~ 475 (827)
++++.|..+.+|....-...--+..+.|.++. +.+.++ +..+|..|...|.+++||.-.. .+|+-+.||.
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 99999999988876543322222222222211 111111 2347889999999999987655 5667789998
Q ss_pred EEEE
Q 003356 476 ILYD 479 (827)
Q Consensus 476 iiwd 479 (827)
++-+
T Consensus 355 viIs 358 (370)
T KOG1007|consen 355 VIIS 358 (370)
T ss_pred EEee
Confidence 8444
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=3.2e-10 Score=114.45 Aligned_cols=186 Identities=15% Similarity=0.201 Sum_probs=135.9
Q ss_pred CEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC--CCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 269 ~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
..+|++..+|+|++||..+ ++.+..+++ +.+.++.++|.. .+..+.+++.||+|++||+........+.
T Consensus 41 ~~vav~lSngsv~lyd~~t-g~~l~~fk~--------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-GQLLEEFKG--------PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccc-hhhhheecC--------CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 6789999999999999998 888888888 788888888877 46688999999999999998766544433
Q ss_pred --cccccceeeeeecCCCCCCccceeecc-------eeEEEccCCceE-EEE-ecCCcceEEEEec----ceeeeecccC
Q 003356 347 --QISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRL-YAI-EEGSSERVLIFSF----GKCCLNRGVS 411 (827)
Q Consensus 347 --~~~~~~v~s~~~sp~~~~~~~~l~sg~-------~i~~W~~~~~~l-~~~-~~~~~~~v~~~~~----~~~~~s~~~d 411 (827)
++...+..+++.. |+...++.|. .+.+||.+..+. +.. ...|.+.|.++.| ...++|||.|
T Consensus 112 ~~~~~~~~f~~ld~n----ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLN----CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred ccCCCCCcceEeecc----CcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 2211234444332 3346666664 788999987554 443 3568888866666 6689999999
Q ss_pred CCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCC-CEEEEEeCCceE-EEEcCCCe
Q 003356 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG-~~lavag~dg~i-iwd~~t~~ 484 (827)
|.+.++++...++.= -.....+|...|.++.|..++ +.|.+-+..+.. +|+.+.+.
T Consensus 188 GLvnlfD~~~d~EeD-----------------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEED-----------------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred ceEEeeecCCCcchh-----------------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 999999976654310 022345677789999999988 335555666655 99998876
No 193
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=2.3e-10 Score=122.50 Aligned_cols=229 Identities=14% Similarity=0.090 Sum_probs=144.2
Q ss_pred EEEEeCCcEEEEeeccCccccceeeccc-----------eecCCCCcE-EEEEcCCCCEEEEEecCCeEEEEEcCCCC--
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-----------KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-- 289 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~-----------~~~~h~~~v-~va~sp~~~lla~g~~dg~v~vw~~~~~~-- 289 (827)
..+.+-...+++++.++++++|++.... .+.+|..+| |+++.+.+..+.+|+.||+|+.|++....
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 4455566678888889999999983211 126898876 59999999999999999999999765311
Q ss_pred -------cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecccccc-ceeeeeecCC
Q 003356 290 -------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS-SISSPIVKPN 361 (827)
Q Consensus 290 -------~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~-~v~s~~~sp~ 361 (827)
....++.+ |++.|+.+++|+..+.|++++.||+++.|...+... +++...-.. .-.++.+-..
T Consensus 380 ~ds~dp~vl~~~l~G--------htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLG--------HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred ccccCcchhccceec--------cccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc
Confidence 12234555 999999999999999999999999999999877655 444321000 0111111111
Q ss_pred CCCCccceeecceeEEEccCC---ceEEEEecC----------CcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEE
Q 003356 362 QDCKYEPLMSGTSMMQWDEYG---YRLYAIEEG----------SSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLV 428 (827)
Q Consensus 362 ~~~~~~~l~sg~~i~~W~~~~---~~l~~~~~~----------~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~ 428 (827)
.. ...+++ .+.....+.. .+-+.++.. +...|+.-+-+....++..|..+++.+...+.-
T Consensus 451 ~~--a~~~~s-~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~---- 523 (577)
T KOG0642|consen 451 RP--AHSLAS-FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI---- 523 (577)
T ss_pred hh--Hhhhhh-cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc----
Confidence 00 000000 0111111111 111111110 011122222244555666777777766554443
Q ss_pred EecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 429 ~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
......|-..++++++.|+|-+|++++.||.+ +|+...+.
T Consensus 524 ----------------l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 524 ----------------LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ----------------chheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 44556777889999999999999999999999 99886543
No 194
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=7.8e-10 Score=112.86 Aligned_cols=251 Identities=10% Similarity=0.026 Sum_probs=169.2
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCC-CCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~-~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
.+|.+.+. +.||.++++||+|+.|..++||+++. .-..++- +.+++ ...|...|.|++|.-.++.+.+|..+++|
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de-~~~~k~~--KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDE-LMVRKTP--KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHH-HHhhcCC--CCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 68999998 99999999999999999999999875 2111110 00111 11277899999999999999999999999
Q ss_pred EEEeccCCeeEEEeccc-cccceeeeeecCCCCCCccceeecc---eeEEEccCCce----EEEEecCCcceE--EEEec
Q 003356 332 TVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR----LYAIEEGSSERV--LIFSF 401 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~~~-~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~----l~~~~~~~~~~v--~~~~~ 401 (827)
..-|+.+.+.+-..... ....|..+..+|.+ ..+++.+ .+.+|+....+ ++... ...... ..|.+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D----N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A-N~~~~F~t~~F~P 204 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTD----NTLIVVTRAKLVSFIDNRDRQNPISLVLPA-NSGKNFYTAEFHP 204 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCC----ceEEEEecCceEEEEeccCCCCCCceeeec-CCCccceeeeecC
Confidence 99999998876665432 23478888889987 6666554 78899986543 32222 222233 34444
Q ss_pred --ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EE
Q 003356 402 --GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (827)
Q Consensus 402 --~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iw 478 (827)
...+++.+..+.+.+|+.......+|-+.+ -..+...+..-.++-|+|+|..+.+--+..-. +|
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~-------------~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~ 271 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSM-------------FKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYF 271 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhc-------------cccCcccchhhhheeeCCCCCeehhhhccCCCEEe
Confidence 567778888888889998776654433332 01111111122468899999988765444444 99
Q ss_pred EcCCCeEEeeCCccce-EEE---EEEEEEEeCCEEEEEEEeeCCCcEEEEEeeCC
Q 003356 479 DIRQKKWRVFGDITQE-QKI---QSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 479 d~~t~~w~~f~~~~~e-~~~---~v~gl~W~~~~li~~~~~~~~~~~~lrly~~~ 529 (827)
|+.+.+...|...... .-+ ++..|++.+++-|+.+ +..+.|.+|..+
T Consensus 272 D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tG----SD~~~i~~WklP 322 (609)
T KOG4227|consen 272 DFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATG----SDHWGIHIWKLP 322 (609)
T ss_pred eeecccceeEeccCCCCcceeeeeeeeeeeecceeeecc----CcccceEEEecC
Confidence 9999988777544222 212 3457999988776642 345788888776
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.15 E-value=6.8e-09 Score=106.14 Aligned_cols=231 Identities=15% Similarity=0.223 Sum_probs=150.8
Q ss_pred ceEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcC-cccEEEEcCCccEEEEEecCc--EEEEEEEEe
Q 003356 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTSSL--YLHIFKVQI 98 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G-~~~~v~wSPDg~~lav~t~dg--~l~l~~v~~ 98 (827)
-..+.|+.|+.+++.++.++-++++.+ |-.+... ....| .+..+.|| ++.+|+.+.+. .+++++...
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gyk~~~~~-~~~k~~~-------~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGYKIFSCS-PFEKCFS-------KDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred eeeeeeccceeEEEccCCCceeEEecC-chHHhhc-------ccCCCeEEEEeecc--cceeEEEecCCCceEEEEEccc
Confidence 344568999999999999999999996 5444111 11122 24556787 45777766543 477777754
Q ss_pred cCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcc
Q 003356 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (827)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~ 178 (827)
... |..+. + ..+|.++..+.++|+++..+. |++++....+....
T Consensus 78 ~~~-------------ICe~~--------f---pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhT----------- 121 (391)
T KOG2110|consen 78 KTT-------------ICEIF--------F---PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHT----------- 121 (391)
T ss_pred Cce-------------EEEEe--------c---CCceEEEEEccceEEEEEccc-EEEEecccceeehh-----------
Confidence 321 11110 1 125667777889999988776 88877665432111
Q ss_pred cceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCC--cEEEEe--eccCccccceeecccee-
Q 003356 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG--QLMSCS--VSKKGLKLAEFIKIDKE- 253 (827)
Q Consensus 179 i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG--~~~~~~--~~~~~~~~~~~~~~~~~- 253 (827)
+.. . .+...++++++++. .+++.- ...+.+.+||..+.+..
T Consensus 122 I~t-----------------------~-----------~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~ 167 (391)
T KOG2110|consen 122 IET-----------------------T-----------PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN 167 (391)
T ss_pred hhc-----------------------c-----------CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee
Confidence 111 0 01112222233322 233321 12456778887765433
Q ss_pred --cCCCCcEE-EEEcCCCCEEEEEecCCe-EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC
Q 003356 254 --LGSGDAVC-ASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (827)
Q Consensus 254 --~~h~~~v~-va~sp~~~lla~g~~dg~-v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg 329 (827)
..|.+.+. ++||++|.+||+++..|+ ||||.+.+ ++.+..++... ....|.+++|+||+++|++.+..+
T Consensus 168 ~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~------~~~~IySL~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 168 TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGT------YPVSIYSLSFSPDSQFLAASSNTE 240 (391)
T ss_pred EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCc------eeeEEEEEEECCCCCeEEEecCCC
Confidence 67998887 999999999999999996 59999988 77777776511 234688999999999999999999
Q ss_pred cEEEEeccCC
Q 003356 330 GLTVWSVSGC 339 (827)
Q Consensus 330 ~v~vWs~~~~ 339 (827)
+|.++.+...
T Consensus 241 TVHiFKL~~~ 250 (391)
T KOG2110|consen 241 TVHIFKLEKV 250 (391)
T ss_pred eEEEEEeccc
Confidence 9999988654
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.12 E-value=3.6e-09 Score=119.07 Aligned_cols=265 Identities=14% Similarity=0.144 Sum_probs=159.5
Q ss_pred CCCCceEEEEEecc-eEEEEEc-cCeEEEeecCCceeE-EEEEEeChHhhhhcCcccEEEEcCCccE--EEEEecCcEEE
Q 003356 18 CPSSQQIIYFKVNN-GLLLIAS-PCHIELWSSSQHKVR-LGKYKRDSESVQREGENLQAVWSPDTKL--IAVVTSSLYLH 92 (827)
Q Consensus 18 ~~~~~~vv~fspdg-~lla~~~-~~~v~IW~~~~~~~~-l~~~~r~~~s~~~~G~~~~v~wSPDg~~--lav~t~dg~l~ 92 (827)
|++...++.|+|.. +++|.+. .++|.+||..+++.. ........ ..+-.+++.+.|-.+-.- +++++.||.|.
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~--~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALE--VSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccccc--ccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 44556778899985 5666664 689999999755432 12111111 123477789999765555 99999999999
Q ss_pred EEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe-ecCCCeEEEEecCCcEEEEecCCccCcceeecc
Q 003356 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVH 171 (827)
Q Consensus 93 l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~ 171 (827)
.|++..-...... +..... ....... -.........+ ..+...+++||..|.|....+.+....... ..
T Consensus 319 ~W~~~~l~~P~e~-------~~~~~~-~~~~~~~-~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~-~~ 388 (555)
T KOG1587|consen 319 SWDTDMLSLPVEG-------LLLESK-KHKGQQS-SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV-SY 388 (555)
T ss_pred eeeccccccchhh-------cccccc-ccccccc-ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc-cc
Confidence 9977532210000 000000 0000000 00111112222 345678999999999988666554332210 00
Q ss_pred cCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceee-cc
Q 003356 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI-KI 250 (827)
Q Consensus 172 ~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~-~~ 250 (827)
+++ .....+.+++..+.++|.. ..++.+..|.++++|... ..
T Consensus 389 ~~~---------------------------~~~~~h~g~v~~v~~nPF~----------~k~fls~gDW~vriWs~~~~~ 431 (555)
T KOG1587|consen 389 KGH---------------------------STFITHIGPVYAVSRNPFY----------PKNFLSVGDWTVRIWSEDVIA 431 (555)
T ss_pred ccc---------------------------ccccccCcceEeeecCCCc----------cceeeeeccceeEeccccCCC
Confidence 000 1123345667777755544 334444447788888766 22
Q ss_pred cee---cCCCCcEE-EEEcCCC-CEEEEEecCCeEEEEEcCCC-CcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEE
Q 003356 251 DKE---LGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (827)
Q Consensus 251 ~~~---~~h~~~v~-va~sp~~-~lla~g~~dg~v~vw~~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Las 324 (827)
..+ ..+.+.+. ++|||.. ..+|++..||.+.+||+... .+++.+... +....+.+.|+++|+.||+
T Consensus 432 ~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--------~~~~l~~~~~s~~g~~lav 503 (555)
T KOG1587|consen 432 SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--------CSPALTRVRWSPNGKLLAV 503 (555)
T ss_pred CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--------cccccceeecCCCCcEEEE
Confidence 222 34556566 9999975 57888888999999999751 233444433 4556778899999999999
Q ss_pred EEcCCcEEEEeccCC
Q 003356 325 GWKSRGLTVWSVSGC 339 (827)
Q Consensus 325 g~~Dg~v~vWs~~~~ 339 (827)
|...|++.+|++...
T Consensus 504 Gd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 504 GDANGTTHILKLSES 518 (555)
T ss_pred ecCCCcEEEEEcCch
Confidence 999999999999643
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=3.2e-09 Score=119.82 Aligned_cols=207 Identities=13% Similarity=0.132 Sum_probs=128.8
Q ss_pred EEEEEeCCcEEEEeecc---Cccccceeeccce--ecCCCC-cEEEEEcCCCCEEEEEe-cCCeEEEEEcCCCCcceEEE
Q 003356 223 LFVLYSNGQLMSCSVSK---KGLKLAEFIKIDK--ELGSGD-AVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTV 295 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~---~~~~~~~~~~~~~--~~~h~~-~v~va~sp~~~lla~g~-~dg~v~vw~~~~~~~~~~~l 295 (827)
...++|||+.++..+.+ .++.+|+...++. +..... ....+|+|||+.|++++ .+|.+.||.++..+...+.+
T Consensus 208 ~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 208 SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL 287 (429)
T ss_pred cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence 35578888877765543 2466788765432 211111 22389999999998875 68877777554323444555
Q ss_pred EeecCCCCCCCCCCeEEEEECCCCCEEEEEE-cCCcEEEEeccCC-eeEEEeccccccceeeeeecCCCCCCccceeec-
Q 003356 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG- 372 (827)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~-~Dg~v~vWs~~~~-~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg- 372 (827)
.. +.+.+.+.+|+|||+.|+.++ .++...||.+... .....+ .+ .. .++.|+|++ ..++..
T Consensus 288 t~--------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~~--~~~~~SpDG----~~ia~~~ 351 (429)
T PRK01742 288 TS--------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-RG--YSAQISADG----KTLVMIN 351 (429)
T ss_pred cc--------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-CC--CCccCCCCC----CEEEEEc
Confidence 44 666788999999999777554 5788899987422 122222 22 11 457789998 555433
Q ss_pred -ceeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeecc
Q 003356 373 -TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (827)
Q Consensus 373 -~~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~ 450 (827)
..+..|+..+++...........-..+++ ++.++.++.++...+|.+...+.+ ....+..
T Consensus 352 ~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~------------------~~~~l~~ 413 (429)
T PRK01742 352 GDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR------------------FKARLPG 413 (429)
T ss_pred CCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC------------------ceEEccC
Confidence 35667888777654333222222245666 888888888888887776543222 1344556
Q ss_pred CCCcEEEEEEcCC
Q 003356 451 QNWPVQHVAASKD 463 (827)
Q Consensus 451 ~~~~I~~va~Spd 463 (827)
|.+.+...+|||-
T Consensus 414 ~~g~~~~p~wsp~ 426 (429)
T PRK01742 414 SDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCcccCCC
Confidence 7777888889874
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=6.6e-09 Score=118.43 Aligned_cols=276 Identities=16% Similarity=0.169 Sum_probs=162.5
Q ss_pred ceEEEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEc--CCccEEEEEecCcEEEEEEEEe
Q 003356 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWS--PDTKLIAVVTSSLYLHIFKVQI 98 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wS--PDg~~lav~t~dg~l~l~~v~~ 98 (827)
..++.|+|=...++++. ..+|+|||.. ....+..+.-.. .-+-.+.++.+- -|..++.+++.||.||||+--.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e-~~~~l~~F~n~~---~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWE-KGRLLNGFDNGA---FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecc-cCceeccccCCC---CCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 45677888887888886 5789999996 444444433221 112334556653 5677899999999999998532
Q ss_pred cC--ceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCC
Q 003356 99 TE--KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (827)
Q Consensus 99 ~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~ 176 (827)
.. +...... | ..+....+.....+.++...-....|++++.-..|++ ||.+....
T Consensus 1143 ~~~~~~eLVTa--------w---~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRI--WDa~~E~~---------- 1199 (1387)
T KOG1517|consen 1143 DKWKKPELVTA--------W---SSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRI--WDAHKEQV---------- 1199 (1387)
T ss_pred cccCCceeEEe--------e---ccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEE--Eeccccee----------
Confidence 21 1111100 0 0112222222223344444444456666655455555 66554322
Q ss_pred cccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce----
Q 003356 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---- 252 (827)
Q Consensus 177 ~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~---- 252 (827)
...+|+. ....++++.-+ ...|.+++.|..||.++++|...+..
T Consensus 1200 --~~diP~~---------------------s~t~vTaLS~~---------~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1200 --VADIPYG---------------------SSTLVTALSAD---------LVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred --EeecccC---------------------CCccceeeccc---------ccCCceEEEeecCCceEEeecccCCccccc
Confidence 1222221 22234444311 12367788888888888888664432
Q ss_pred --ecCCCCc--EE-EEEcCCCC-EEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 003356 253 --ELGSGDA--VC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (827)
Q Consensus 253 --~~~h~~~--v~-va~sp~~~-lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~ 326 (827)
+..|.+. +. +.+.++|- -|++|+.||.|++||+... .....+.. ...++..+.++++..+++...+|+|+
T Consensus 1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~i---v~~~~yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLTI---VAHWEYGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-ccccccee---eeccccCccceeeeeccCCCeeeecC
Confidence 2566665 55 99988664 4999999999999999872 22211111 01111223599999999999999999
Q ss_pred cCCcEEEEeccCCeeEEEeccc------cccceeeeeecCCC
Q 003356 327 KSRGLTVWSVSGCRLMSTIRQI------SLSSISSPIVKPNQ 362 (827)
Q Consensus 327 ~Dg~v~vWs~~~~~l~~tl~~~------~~~~v~s~~~sp~~ 362 (827)
. +.|+||++.|.++. .++.+ ...++++++|+|-.
T Consensus 1324 ~-q~ikIy~~~G~~l~-~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1324 A-QLIKIYSLSGEQLN-IIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred c-ceEEEEecChhhhc-ccccCcccccCcCCCcceeeecchh
Confidence 9 99999999886543 22211 12345677777764
No 199
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.08 E-value=1.1e-08 Score=118.59 Aligned_cols=276 Identities=10% Similarity=0.069 Sum_probs=152.2
Q ss_pred cccC-ceeecCCCCC--CCCCceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhh-hcCcccEEEEcCC
Q 003356 4 AYGW-PQVIPLEQGL--CPSSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQ-REGENLQAVWSPD 78 (827)
Q Consensus 4 ~~gw-p~~~~~~~~~--~~~~~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~-~~G~~~~v~wSPD 78 (827)
+-|| ||...+.+.. .+....+...++++.+|+++ +|++|+||+..+ ...-+...|+..... +-+.+..+..-+.
T Consensus 1031 ~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k-~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1031 PPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK-LEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred CCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehh-hhcCcceeeeeEEEeccCCceEEEEeccC
Confidence 3463 6655444332 22223444556667999999 578999999953 222112234433332 3456678888999
Q ss_pred ccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe----ecCCC-eEEEEecCCc
Q 003356 79 TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI----VSDNK-HMLLGLSDGS 153 (827)
Q Consensus 79 g~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~----~~d~~-~llv~t~dg~ 153 (827)
|..+|++|.||.|++.+++......... ....+.+ ....+.+..+ +-++. .++.+|..+.
T Consensus 1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~----~~~ri~n-----------~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVA----TQVRIPN-----------LKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred CCeEEEEcCCCeEEEEEcccccccccee----eeeeccc-----------ccCCCceEEeecccccccceeEEEEEeccc
Confidence 9999999999999999997532111110 0000000 1111222222 11223 5777888888
Q ss_pred EEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEE
Q 003356 154 LYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM 233 (827)
Q Consensus 154 i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~ 233 (827)
+.. ||....... | +.......+.|++++ +++-+..+
T Consensus 1175 iv~--~D~r~~~~~------------------------w--------~lk~~~~hG~vTSi~----------idp~~~Wl 1210 (1431)
T KOG1240|consen 1175 IVS--WDTRMRHDA------------------------W--------RLKNQLRHGLVTSIV----------IDPWCNWL 1210 (1431)
T ss_pred eEE--ecchhhhhH------------------------H--------hhhcCccccceeEEE----------ecCCceEE
Confidence 765 654322111 0 012234456777776 55556666
Q ss_pred EEeeccCccccceeecccee-----cCCCCcEEEEEcCC---CCEEEE-Ee-cCCeEEEEEcCCCCcceEEEEee-cC-C
Q 003356 234 SCSVSKKGLKLAEFIKIDKE-----LGSGDAVCASIAPE---QQILAV-GT-RRGVVELYDLAESASLIRTVSLY-DW-G 301 (827)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~va~sp~---~~lla~-g~-~dg~v~vw~~~~~~~~~~~l~~~-~~-~ 301 (827)
++|...|.+-+||..-.... ..+.....+..+|- ....++ |+ ..+.|.+|++.+ +....++... +- .
T Consensus 1211 viGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~p~ 1289 (1431)
T KOG1240|consen 1211 VIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGAPI 1289 (1431)
T ss_pred EEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCCcc
Confidence 66666666667887633222 22322223555543 344444 44 578999999988 5554444433 11 1
Q ss_pred CCC---------CCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 003356 302 YSM---------DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 302 ~~~---------~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~ 340 (827)
.++ .+.-+...+++.--+..+.+|+.|..|+.||....+
T Consensus 1290 ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1290 LSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred hhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 100 122223344444455688899999999999987654
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=2.5e-09 Score=108.72 Aligned_cols=186 Identities=22% Similarity=0.268 Sum_probs=134.4
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC-CCEEEEEEcCCcEEEEeccCCe
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD-g~~Lasg~~Dg~v~vWs~~~~~ 340 (827)
++|++.---+|++..|-+||+|+-.+ . ....++.. ....|+|++|-|. ++.||+|.. ++|.+|......
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t-~pt~Lks~-------sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-T-CPTKLKSV-------SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-C-CCceecch-------hhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence 89999888889999999999999765 2 22223321 3567999999995 568888888 899999874221
Q ss_pred ------------eEEEeccccccceeeeeecCCCCCCccceeecc----eeEEEccCCceEEEEecCCcce--EEEEec-
Q 003356 341 ------------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSER--VLIFSF- 401 (827)
Q Consensus 341 ------------l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~i~~W~~~~~~l~~~~~~~~~~--v~~~~~- 401 (827)
....+++.+...|+++++.+|+ ..+++++ .+++|++++++......-.-+. .+.+++
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg----t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd 249 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG----TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD 249 (445)
T ss_pred ccccccccccccchhheeCCCCceeeEEEEcCCC----CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC
Confidence 1222344345789999999998 7777665 8999999988776554222223 467777
Q ss_pred ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEcC
Q 003356 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIR 481 (827)
Q Consensus 402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~~ 481 (827)
+..+..+..|+..++|...+.-.. ....-..+.|...+|||+|++|..+......+|++.
T Consensus 250 gd~lfaAt~davfrlw~e~q~wt~--------------------erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQENQSWTK--------------------ERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred CCEEEEecccceeeeehhccccee--------------------cceeccCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 888888999999999965443221 112222347999999999999988887766688874
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.07 E-value=2.6e-08 Score=112.18 Aligned_cols=216 Identities=16% Similarity=0.133 Sum_probs=124.8
Q ss_pred CCcccEEEEEEcCCcce--EEEEEeCCcEEEEeeccCccc----cceee--ccceecCCCCcEEEEEcCC-CCEEEEEec
Q 003356 206 PISSAIIWLELCLPMRL--LFVLYSNGQLMSCSVSKKGLK----LAEFI--KIDKELGSGDAVCASIAPE-QQILAVGTR 276 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~--~~~~s~dG~~~~~~~~~~~~~----~~~~~--~~~~~~~h~~~v~va~sp~-~~lla~g~~ 276 (827)
.+..+++.+.|-..... ++..+.||++.....+..... .-+.. .+.....+..+++++|.+. -..+.+|+.
T Consensus 289 sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe 368 (555)
T KOG1587|consen 289 SHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE 368 (555)
T ss_pred cCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC
Confidence 34556666666655433 666777777766532221110 00000 0001122334556888874 457889999
Q ss_pred CCeEEEEEcCCCCcce-EEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc-CCeeEEEecccccccee
Q 003356 277 RGVVELYDLAESASLI-RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSIS 354 (827)
Q Consensus 277 dg~v~vw~~~~~~~~~-~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~-~~~l~~tl~~~~~~~v~ 354 (827)
+|.|.-=+-....... ...++.. ....|.|+|.++.++|=+..++..+.|.++++|+.. ....+..+..+ .+.+.
T Consensus 369 ~G~v~~~~r~g~~~~~~~~~~~~~--~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~-~~~v~ 445 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAPEVSYKGHS--TFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS-PDYVT 445 (555)
T ss_pred CcEEEEEeccCCcccccccccccc--cccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc-cceee
Confidence 9998762222211111 1111100 111289999999999977755555558999999976 33322222221 12233
Q ss_pred eeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCC
Q 003356 355 SPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (827)
Q Consensus 355 s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~ 434 (827)
++ .|++... ..++++..+|.+.+||+++...+
T Consensus 446 ~v--------------------aWSptrp-------------------avF~~~d~~G~l~iWDLl~~~~~--------- 477 (555)
T KOG1587|consen 446 DV--------------------AWSPTRP-------------------AVFATVDGDGNLDIWDLLQDDEE--------- 477 (555)
T ss_pred ee--------------------EEcCcCc-------------------eEEEEEcCCCceehhhhhccccC---------
Confidence 33 3443221 13456677899999999887664
Q ss_pred CcceEEEeeeceee-ccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 435 DELKILHLNLPVSY-ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 435 ~~~~w~~~~~p~~~-~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
|... .-+......+.|+++|+.||+|...|.+ +|++..
T Consensus 478 ----------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 478 ----------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ----------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 3322 1234456778999999999999999999 999854
No 202
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.07 E-value=2.5e-06 Score=103.54 Aligned_cols=438 Identities=15% Similarity=0.175 Sum_probs=211.9
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEE--EeecCCC
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNK 143 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~d~~ 143 (827)
..+.++++.+-+|...+++++++|.|.++..+.+.. +. .+ +. .+..+..|. +.++|.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~----------~~---~~----E~---VG~vd~GI~a~~WSPD~E 133 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPD----------ED---EI----EI---VGSVDSGILAASWSPDEE 133 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCC----------Cc---ee----EE---EEEEcCcEEEEEECCCcC
Confidence 347789999999999999999999999985532110 00 00 11 011122344 4578888
Q ss_pred eEEEEecCCcEEEEecCCccCcceeecccCCC-Ccccceecc-cCCCCccccccCCce--eccccCCCcccEEEEEEcCC
Q 003356 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSND-SSVAALSHH-FPSNGLASVDTSGAF--VSDHKFPISSAIIWLELCLP 219 (827)
Q Consensus 144 ~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~-~~~i~~~~~-s~~~~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~ 219 (827)
.+++.|.+|.+..+.-+-+...+..+.....+ .+.++ +.. ...-|+--+.+.... .+.+... +.....+. ..+
T Consensus 134 lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~Vs-VGWGkKeTQF~Gs~gK~aa~~~~~p~~~-~~d~~~~s-~dd 210 (928)
T PF04762_consen 134 LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVS-VGWGKKETQFHGSAGKAAARQLRDPTVP-KVDEGKLS-WDD 210 (928)
T ss_pred EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceee-eccCcccCccCcchhhhhhhhccCCCCC-ccccCccc-cCC
Confidence 99999999999887544332222221111111 01110 000 000111000000000 0000000 00001111 112
Q ss_pred cceEEEEEeCCcEEEEeec---c---Cccccceeecccee--cCCCCcE--EEEEcCCCCEEEEEec---CCeEEEEEcC
Q 003356 220 MRLLFVLYSNGQLMSCSVS---K---KGLKLAEFIKIDKE--LGSGDAV--CASIAPEQQILAVGTR---RGVVELYDLA 286 (827)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~---~---~~~~~~~~~~~~~~--~~h~~~v--~va~sp~~~lla~g~~---dg~v~vw~~~ 286 (827)
....+.+-.||+++++++- . ..+++|+-. +... ....+.. +++|-|.|++||+... .-.|.+|.-+
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence 2334556678888887764 1 345677654 1111 1111112 3799999999999875 3456666533
Q ss_pred CCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee--EEEeccccccceeeeeecCCCCC
Q 003356 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDC 364 (827)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l--~~tl~~~~~~~v~s~~~sp~~~~ 364 (827)
|-.-..+... . ......|..++|++|+..||+-..| .|.+|....-.- ...+. |+...
T Consensus 290 --GLrhgeF~l~---~-~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~-----------~~~~~-- 349 (928)
T PF04762_consen 290 --GLRHGEFTLR---F-DPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIR-----------FSSSE-- 349 (928)
T ss_pred --CcEeeeEecC---C-CCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEE-----------ccCCC--
Confidence 2211122221 0 1145679999999999999998875 599999876542 11221 11111
Q ss_pred CccceeecceeEEEccCCceEEEEecCCcceEEEEecceeee-ecc----cCCCeeeeEEEEcCCeEEEEe---cCCCCc
Q 003356 365 KYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCL-NRG----VSGMTYARQVIYGEDRLLVVQ---SEDTDE 436 (827)
Q Consensus 365 ~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~-s~~----~d~~~~~w~~~~~~~~~~~~~---~~d~~~ 436 (827)
+.....|+++....+..... .+.+..+.|.-... +.+ ..+.+- + -..++++++. ..-.|.
T Consensus 350 -------~~~~~~Wdpe~p~~L~v~t~-~g~~~~~~~~~~v~~s~~~~~~D~g~va---V-IDG~~lllTpf~~a~VPPP 417 (928)
T PF04762_consen 350 -------SVNFVKWDPEKPLRLHVLTS-NGQYEIYDFAWDVSRSPGSSPNDNGTVA---V-IDGNKLLLTPFRRAVVPPP 417 (928)
T ss_pred -------CCCceEECCCCCCEEEEEec-CCcEEEEEEEEEEEecCCCCccCceEEE---E-EeCCeEEEecccccCCCch
Confidence 01236788765544444332 12333333311111 100 111111 1 1223333332 111223
Q ss_pred ceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCC-eEE----eeCCc---------cce-EEEEEE
Q 003356 437 LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWR----VFGDI---------TQE-QKIQSK 500 (827)
Q Consensus 437 ~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~-~w~----~f~~~---------~~e-~~~~v~ 500 (827)
+....+++| .+|..++|++++..+|+-..||.+ +|....+ .|. .+... ..+ .....+
T Consensus 418 Ms~~~l~~~-------~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (928)
T PF04762_consen 418 MSSYELELP-------SPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLR 490 (928)
T ss_pred HhceEEcCC-------CCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEE
Confidence 333333333 579999999999989999999988 8885443 221 00000 001 112356
Q ss_pred EEEEeCCEEEEEEEeeCCCcEEEEEeeCCCC-CccceEEEEecCCccEEEEccCCE--EEEEEcCceEE
Q 003356 501 GLLWLGKIIVVCNYIDSSNTYELLFYPRYHL-DQSSLLCRKSLLAKPIVMDVYEDY--ILVTYRPFDVH 566 (827)
Q Consensus 501 gl~W~~~~li~~~~~~~~~~~~lrly~~~~l-~~~~~~~~~~l~~~~~~l~~~~~~--llV~~~~~~i~ 566 (827)
.++|.++..+++......+...+.++..... ....+......+.....+....+. +++-+.+|.+.
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~ 559 (928)
T PF04762_consen 491 QLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVF 559 (928)
T ss_pred EEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEE
Confidence 7899865433332233234566667766411 122233334444434444433322 45545566555
No 203
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=1.7e-08 Score=97.44 Aligned_cols=248 Identities=15% Similarity=0.125 Sum_probs=145.4
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCC-CCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~-~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~ 340 (827)
-+++|.+++++.|..+|+|.+..+..-......-.++..-+ ..+|.++|..++|. ..+|.+|++ |.|+=|--....
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhh
Confidence 68999999999999999999998865111000001111111 13499999999999 346777776 999988654321
Q ss_pred eEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCeeeeEE
Q 003356 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 341 l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~ 419 (827)
... .+-..|...........+-..-.-+.+++ ..+++.++.|+.++.|++
T Consensus 93 es~-----------------------------~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl 143 (325)
T KOG0649|consen 93 ESL-----------------------------ATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL 143 (325)
T ss_pred hhc-----------------------------cchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe
Confidence 100 00011211110000000000001133333 445666667888888887
Q ss_pred EEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEE-eeCCccceEEE
Q 003356 420 IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKI 497 (827)
Q Consensus 420 ~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~-~f~~~~~e~~~ 497 (827)
..+.- ..+|.+|..-|.+++--.....+.+|++||++ +||..|++.- +.+.-.++.-.
T Consensus 144 E~G~i--------------------~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~l 203 (325)
T KOG0649|consen 144 EDGRI--------------------QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLL 203 (325)
T ss_pred cCCEE--------------------EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhc
Confidence 66543 56899999999999984444567799999999 9999998753 33322222111
Q ss_pred E------EEEEEEeCCEEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEecCCccEEEEccCCEEEEEEcCceEEEEEE
Q 003356 498 Q------SKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV 570 (827)
Q Consensus 498 ~------v~gl~W~~~~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~~~~~~l~~~~~~llV~~~~~~i~l~~~ 570 (827)
. +..++-..+-++.| +.-.+-+|... ...-..+.++|++.-...+.++.++....-..+.-|.+
T Consensus 204 Rp~~g~wigala~~edWlvCG------gGp~lslwhLr---sse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 204 RPDWGKWIGALAVNEDWLVCG------GGPKLSLWHLR---SSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred CcccCceeEEEeccCceEEec------CCCceeEEecc---CCCceEEEecccceeEeeeecceEEEeccccceeeeee
Confidence 1 22233344555554 34556677553 33345677888877788888887777553334444543
No 204
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.04 E-value=1.6e-08 Score=107.87 Aligned_cols=269 Identities=13% Similarity=0.157 Sum_probs=158.8
Q ss_pred EEEEEec--ceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcc-cEEEE-----cCCccEEEEEecCcEEEEEE
Q 003356 24 IIYFKVN--NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGEN-LQAVW-----SPDTKLIAVVTSSLYLHIFK 95 (827)
Q Consensus 24 vv~fspd--g~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~-~~v~w-----SPDg~~lav~t~dg~l~l~~ 95 (827)
++.+.++ |..|+..-...+.+|+.+ ....+. +......=+|.+ .+-.| .|+|--+.++=+.|.+.+++
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~-g~~~~~---~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYR-GAADLS---KPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEcc-Ccchhc---cchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEec
Confidence 3444444 557777767778999884 322221 111111111222 12223 47777788888888888888
Q ss_pred EEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe---ecCCCeEEEEecCCcEEEEecCCccCcceeeccc
Q 003356 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI---VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (827)
Q Consensus 96 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~---~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~ 172 (827)
........... +.. .....+++|+ ..+...++++-.+|.++.++-. ..
T Consensus 202 p~~~~~sklfn-----------------e~r--~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~--~~-------- 252 (636)
T KOG2394|consen 202 PINFEVSKLFN-----------------EER--LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE--IV-------- 252 (636)
T ss_pred chhhHHHHhhh-----------------hcc--cccccceEEEEEEeCCCceEEEEEecCceEEeecc--cc--------
Confidence 76422111111 000 1112355555 2334567777788888776431 11
Q ss_pred CCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce
Q 003356 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK 252 (827)
Q Consensus 173 p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~ 252 (827)
...+...+.++..+.++....... .....++....+....-.-.+|++||+.+++.+.|+.+++++....+.
T Consensus 253 -~~~t~p~~~~~k~~~~f~i~t~ks-------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 253 -CGATAPSYQALKDGDQFAILTSKS-------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL 324 (636)
T ss_pred -ccCCCCcccccCCCCeeEEeeeec-------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH
Confidence 111112222222222221111100 011123333333333323356888999999999999999998776543
Q ss_pred e----cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC-----------
Q 003356 253 E----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP----------- 317 (827)
Q Consensus 253 ~----~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp----------- 317 (827)
+ .--..-.|++|||||++|++|++|.-|.||.+.+ .+.+..-++ |...|..|+|.|
T Consensus 325 lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e-rRVVARGqG--------HkSWVs~VaFDpytt~~ee~~~~ 395 (636)
T KOG2394|consen 325 LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE-RRVVARGQG--------HKSWVSVVAFDPYTTSTEEWNNF 395 (636)
T ss_pred HHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc-ceEEEeccc--------cccceeeEeeccccccccccccc
Confidence 2 1124567899999999999999999999999988 777777677 888999888872
Q ss_pred -------------------------------------CCCEEEEEEcCCcEEEEeccCCeeE
Q 003356 318 -------------------------------------DNSAFAVGWKSRGLTVWSVSGCRLM 342 (827)
Q Consensus 318 -------------------------------------Dg~~Lasg~~Dg~v~vWs~~~~~l~ 342 (827)
..+.+.+.+.|-.+.+||+....+.
T Consensus 396 ~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 396 SGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred ccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 1256788888999999998765443
No 205
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.04 E-value=6.3e-09 Score=102.95 Aligned_cols=183 Identities=13% Similarity=0.211 Sum_probs=123.4
Q ss_pred CCCCcEE-EEEcCCC-----CEEEEEecCCeEEEEEcCCCCcceE---EEEeecCCCCCCCCCCeEEEEECC-CCCEEEE
Q 003356 255 GSGDAVC-ASIAPEQ-----QILAVGTRRGVVELYDLAESASLIR---TVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAV 324 (827)
Q Consensus 255 ~h~~~v~-va~sp~~-----~lla~g~~dg~v~vw~~~~~~~~~~---~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Las 324 (827)
.|.-+++ +-|.|+. ++||+.+ ..+|+|.+..+...++ .+... ....+.+++++..|.. |-++|.+
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~---kns~~~aPlTSFDWne~dp~~igt 168 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNN---KNSEFCAPLTSFDWNEVDPNLIGT 168 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccC---cccccCCcccccccccCCcceeEe
Confidence 4555565 8888876 4777654 4799999985222221 22211 1234788999999997 8899999
Q ss_pred EEcCCcEEEEeccCCe---eEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEec
Q 003356 325 GWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (827)
Q Consensus 325 g~~Dg~v~vWs~~~~~---l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~ 401 (827)
++-|-+..|||+..+. ....|..| ...|..++|...+
T Consensus 169 SSiDTTCTiWdie~~~~~~vkTQLIAH-DKEV~DIaf~~~s--------------------------------------- 208 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETGVSGTVKTQLIAH-DKEVYDIAFLKGS--------------------------------------- 208 (364)
T ss_pred ecccCeEEEEEEeeccccceeeEEEec-CcceeEEEeccCc---------------------------------------
Confidence 9999999999998763 23333344 2334444443321
Q ss_pred ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCc----ceE--------------------EEeeece----eeccCCC
Q 003356 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE----LKI--------------------LHLNLPV----SYISQNW 453 (827)
Q Consensus 402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~----~~w--------------------~~~~~p~----~~~~~~~ 453 (827)
...+++++.||+++++|+..-+...++|.+..... +.| .-+++|. .+.+|..
T Consensus 209 ~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a 288 (364)
T KOG0290|consen 209 RDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA 288 (364)
T ss_pred cceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc
Confidence 23556777788888887777777777776543111 112 1233443 5679999
Q ss_pred cEEEEEEcCC-CCEEEEEeCCceE-EEEcCC
Q 003356 454 PVQHVAASKD-GMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 454 ~I~~va~Spd-G~~lavag~dg~i-iwd~~t 482 (827)
.|..++|.|. +..|++||.|..+ +||+.+
T Consensus 289 ~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 289 SVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred cccceEecCCCCceeeecCCcceEEEEeccc
Confidence 9999999997 6799999999999 999975
No 206
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.03 E-value=8.8e-09 Score=111.19 Aligned_cols=118 Identities=20% Similarity=0.262 Sum_probs=96.1
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecc---------c-eecCCCCcEE-EEEcC-CCCEEE
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI---------D-KELGSGDAVC-ASIAP-EQQILA 272 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~---------~-~~~~h~~~v~-va~sp-~~~lla 272 (827)
...+..|+++.|+|. |.+.++++.+++.+++|..... + .+..|...+| +.|+| -...||
T Consensus 624 l~Ngt~vtDl~WdPF---------D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa 694 (1012)
T KOG1445|consen 624 LFNGTLVTDLHWDPF---------DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLA 694 (1012)
T ss_pred cccCceeeecccCCC---------ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhh
Confidence 345677888888874 4455666677777888876522 1 2367888888 99999 467999
Q ss_pred EEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 003356 273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 273 ~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~ 340 (827)
+++.|.+|++||+.+ ......+.+ |++.|..++|||||+.+|+.+.||+++|+....+.
T Consensus 695 ~asyd~Ti~lWDl~~-~~~~~~l~g--------HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 695 VASYDSTIELWDLAN-AKLYSRLVG--------HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhhccceeeeeehhh-hhhhheecc--------CcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 999999999999998 666667888 99999999999999999999999999999987653
No 207
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.03 E-value=1.2e-08 Score=100.94 Aligned_cols=207 Identities=16% Similarity=0.224 Sum_probs=143.1
Q ss_pred CCCCcEE-EEEcC-CCCEEEEEecC-------CeEEEEEcCCCCcce--EEEEeecCCCCCCCCCCeEEEEECCCCCEEE
Q 003356 255 GSGDAVC-ASIAP-EQQILAVGTRR-------GVVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (827)
Q Consensus 255 ~h~~~v~-va~sp-~~~lla~g~~d-------g~v~vw~~~~~~~~~--~~l~~~~~~~~~~h~~~V~~l~~spDg~~La 323 (827)
.|.+-|+ ++-+| +.++||++..+ -...||.+..+-+.. .++..- -.+..++-|.|.|+.|.|++..||
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v-~~Ldteavg~i~cvew~Pns~kla 139 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECV-ASLDTEAVGKINCVEWEPNSDKLA 139 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHh-hcCCHHHhCceeeEEEcCCCCeeE
Confidence 3556677 88888 45677776552 246789987632220 011100 001124678999999999999999
Q ss_pred EEEcCCcEEEEeccCCee-EEEecc----ccccceeeeeecCCCCCCccceeecceeEEEccCCceEEE-EecCCcceEE
Q 003356 324 VGWKSRGLTVWSVSGCRL-MSTIRQ----ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYA-IEEGSSERVL 397 (827)
Q Consensus 324 sg~~Dg~v~vWs~~~~~l-~~tl~~----~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~-~~~~~~~~v~ 397 (827)
+-. |+.|.+|++..+.. +..+.. .+....++-+|+|..+++.....++.++..||.++.+... +-..|...+.
T Consensus 140 sm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vr 218 (370)
T KOG1007|consen 140 SMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVR 218 (370)
T ss_pred Eec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceee
Confidence 877 68999999976544 333321 1244677888888654433333444599999998766544 4456777787
Q ss_pred EEec----ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCC-CCEEEEEeC
Q 003356 398 IFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGL 472 (827)
Q Consensus 398 ~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Spd-G~~lavag~ 472 (827)
.++| ...++|++.|+.+++||....... .+.+.+|.-+|+++.|+|- .+.|.+||.
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p-------------------v~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP-------------------VQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCcc-------------------ccccCCCceEEEEEEecCccceEEEecCC
Confidence 6666 457899999999999998877762 3567789999999999986 678889999
Q ss_pred CceE-EEEcCC
Q 003356 473 HGLI-LYDIRQ 482 (827)
Q Consensus 473 dg~i-iwd~~t 482 (827)
|..+ +|...+
T Consensus 280 Ds~V~Lsca~s 290 (370)
T KOG1007|consen 280 DSAVNLSCASS 290 (370)
T ss_pred CceeEEEeccc
Confidence 9988 887643
No 208
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=3.2e-08 Score=111.42 Aligned_cols=233 Identities=12% Similarity=0.060 Sum_probs=128.4
Q ss_pred CeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEec---CcEEEEEEEEecCceeecCCCCCCCceee
Q 003356 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (827)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~---dg~l~l~~v~~~~~~~~~~~~~~~~~~~~ 116 (827)
..|.+||.+ .... ..+.+ ..+.+...+|||||+.||..+. +..|.+|++..+.......
T Consensus 179 ~~l~~~d~d-g~~~-~~lt~------~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~---------- 240 (429)
T PRK03629 179 YELRVSDYD-GYNQ-FVVHR------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS---------- 240 (429)
T ss_pred eeEEEEcCC-CCCC-EEeec------CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC----------
Confidence 368888874 2211 11222 1245678999999999997653 3467788875433211110
Q ss_pred eEeeEeecccccccccceEEEeecCCCeEEEE-ecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCcccccc
Q 003356 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (827)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~-t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~ 195 (827)
+.+... -..+++|++.|+.. ..+|...++.|+.+......+
T Consensus 241 -----------~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-------------------------- 282 (429)
T PRK03629 241 -----------FPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-------------------------- 282 (429)
T ss_pred -----------CCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc--------------------------
Confidence 111111 13678899888875 445654444455332211110
Q ss_pred CCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeecc-Cccccce--eeccc--eecCCCCcE-EEEEcCCCC
Q 003356 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAE--FIKID--KELGSGDAV-CASIAPEQQ 269 (827)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~-~~~~~~~--~~~~~--~~~~h~~~v-~va~sp~~~ 269 (827)
......+.. ..++|||+.++..+++ +..++|. ...++ ++..+.... ..+|+|||+
T Consensus 283 ---------t~~~~~~~~----------~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 283 ---------TDGRSNNTE----------PTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGK 343 (429)
T ss_pred ---------cCCCCCcCc----------eEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCC
Confidence 000111222 3467777766655543 3334443 22221 122222223 388999999
Q ss_pred EEEEEecC---CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCc---EEEEeccCCeeEE
Q 003356 270 ILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSVSGCRLMS 343 (827)
Q Consensus 270 lla~g~~d---g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~---v~vWs~~~~~l~~ 343 (827)
+|+..+.+ ..|.+||+++ +. .+.+.. .......+|||||+.|+.++.|+. +.++++.|+. ..
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~---------~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~ 411 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLAT-GG-VQVLTD---------TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KA 411 (429)
T ss_pred EEEEEEccCCCceEEEEECCC-CC-eEEeCC---------CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eE
Confidence 99887654 3578888876 43 333332 112346789999999999988876 6777776543 45
Q ss_pred EeccccccceeeeeecC
Q 003356 344 TIRQISLSSISSPIVKP 360 (827)
Q Consensus 344 tl~~~~~~~v~s~~~sp 360 (827)
.+..+ ...+..++|+|
T Consensus 412 ~l~~~-~~~~~~p~Wsp 427 (429)
T PRK03629 412 RLPAT-DGQVKFPAWSP 427 (429)
T ss_pred ECccC-CCCcCCcccCC
Confidence 55554 34566777766
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.02 E-value=3.3e-10 Score=125.78 Aligned_cols=217 Identities=16% Similarity=0.210 Sum_probs=159.5
Q ss_pred eecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCc
Q 003356 252 KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (827)
Q Consensus 252 ~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~ 330 (827)
++.+|..+|. ++|...|.+|.+|+.|..|+||...+ ..++....+ |.+.|+.++.+....++|+++.|..
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rG--------hs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRG--------HSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccc-hhhhccCCC--------CccccchhccchhhhhhhhcccCce
Confidence 4479999985 88999999999999999999999887 788888888 9999999999999999999999999
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEec----CCcceEEEEec---ce
Q 003356 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEE----GSSERVLIFSF---GK 403 (827)
Q Consensus 331 v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~----~~~~~v~~~~~---~~ 403 (827)
|++|-+..+.++..|++| +++|++++|+|-..+. .-.+..+|+.+=.-+...-. .....+..+-+ +.
T Consensus 256 IrvWrl~~~~pvsvLrgh-tgavtaiafsP~~sss-----~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~ 329 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGH-TGAVTAIAFSPRASSS-----DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD 329 (1113)
T ss_pred EEEEecCCCchHHHHhcc-ccceeeeccCccccCC-----CCCceEeccccccccccCCCCCCcccccceeeeecccccc
Confidence 999999999999999999 8899999999864110 11278899877111111100 01122223333 67
Q ss_pred eeeecccCCCeeeeEEEE---cCCeEE-EEecCCCCc-----------ceEE--EeeeceeeccCCCcEEEEEEcCCCCE
Q 003356 404 CCLNRGVSGMTYARQVIY---GEDRLL-VVQSEDTDE-----------LKIL--HLNLPVSYISQNWPVQHVAASKDGMF 466 (827)
Q Consensus 404 ~~~s~~~d~~~~~w~~~~---~~~~~~-~~~~~d~~~-----------~~w~--~~~~p~~~~~~~~~I~~va~SpdG~~ 466 (827)
..+|++.|+.-..|.+.+ .+..+. +....|.+. +.|. ..++...+.+|..++..+.++|-...
T Consensus 330 ~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 330 RFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred ccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 788999999887776543 233333 333333331 2343 23345556678889999999986554
Q ss_pred -EEEEeCCceE-EEEcCCC
Q 003356 467 -LAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 467 -lavag~dg~i-iwd~~t~ 483 (827)
..+||.||.. +||+-.|
T Consensus 410 i~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred hhhhccCCCceEeeecccC
Confidence 4579999988 9998655
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.01 E-value=1.7e-08 Score=101.33 Aligned_cols=233 Identities=15% Similarity=0.164 Sum_probs=158.5
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCC--cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEE
Q 003356 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (827)
Q Consensus 257 ~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vW 334 (827)
...+|-|||+|...+|++..+..|.||...... +..++++. |...|+.+.|+|.+..|++++.|..-.||
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~--------Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE--------HDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh--------hCcceeEEeecCCCCceeEccCCCCcccc
Confidence 345679999999999999999999999987622 34567776 99999999999999999999999999999
Q ss_pred ec-cCCeeEEEe--ccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEe----cCCcceEEEEec---
Q 003356 335 SV-SGCRLMSTI--RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE----EGSSERVLIFSF--- 401 (827)
Q Consensus 335 s~-~~~~l~~tl--~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~----~~~~~~v~~~~~--- 401 (827)
.. .++.-..++ ..+ +..++++.|+|.. ..++.|+ .+-+|-.++..-|-+. +.....|..+++
T Consensus 83 ~~~~~~~WkptlvLlRi-NrAAt~V~WsP~e----nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRI-NRAATCVKWSPKE----NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred ccCCCCeeccceeEEEe-ccceeeEeecCcC----ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 99 666533332 233 5678999999998 7777776 5556666655555332 234556777777
Q ss_pred ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCc-ceEE----EeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE
Q 003356 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE-LKIL----HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (827)
Q Consensus 402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~-~~w~----~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i 476 (827)
.-.++.||.|+..+++... +-.-++.+. .-|. -.++...+....+.|..+.|||+|..||=.+.|+.+
T Consensus 158 nVLlaaGs~D~k~rVfSay-------IK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAY-------IKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred cceecccccCcceeEEEEe-------eeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 4567789999988876542 222122221 2331 112233444556789999999999999999999999
Q ss_pred -EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEE
Q 003356 477 -LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVV 511 (827)
Q Consensus 477 -iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~ 511 (827)
+=|....+-+ .....+++ +.-+.+.|....-++
T Consensus 231 ~~~da~~p~~~-v~~~~~~~-lP~ls~~~ise~~vv 264 (361)
T KOG1523|consen 231 SFVDAAGPSER-VQSVATAQ-LPLLSVSWISENSVV 264 (361)
T ss_pred EEeecCCCchh-ccchhhcc-CCceeeEeecCCcee
Confidence 6665544211 11111222 234466776554443
No 211
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.01 E-value=9.8e-09 Score=100.35 Aligned_cols=227 Identities=15% Similarity=0.101 Sum_probs=139.5
Q ss_pred EEeCCcEEEEeeccCccccceeecccee---c-CCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcce--EEEEee
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---L-GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLI--RTVSLY 298 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~-~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~--~~l~~~ 298 (827)
|-.+++ ++.+...+.++.|...+.... . .+...+. +-.-|+ ..+.+-+.|+.+.+|++.. +..+ +.+-.+
T Consensus 22 fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~-s~~i~i~Si~~n 98 (323)
T KOG0322|consen 22 FQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY-SAFISIHSIVVN 98 (323)
T ss_pred hccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC-cceEEEeeeecc
Confidence 445555 444566677778877654332 2 3445555 555555 5667788899999999875 2110 000000
Q ss_pred c-------------------------------------------CCCCCCCCCCeEEEEECC-CCC--EEEEEEcCCcEE
Q 003356 299 D-------------------------------------------WGYSMDDTGPVSCIAWTP-DNS--AFAVGWKSRGLT 332 (827)
Q Consensus 299 ~-------------------------------------------~~~~~~h~~~V~~l~~sp-Dg~--~Lasg~~Dg~v~ 332 (827)
. .+...+..|.|.|..|.. +++ +|++|+++|.+-
T Consensus 99 slgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv 178 (323)
T KOG0322|consen 99 SLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVV 178 (323)
T ss_pred ccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEE
Confidence 0 001114567788888765 444 678899999999
Q ss_pred EEeccCCeeEEEec----------cccccceeeeeecCCCCCCccceeecc---eeEEEccC----CceEEEEecCCcce
Q 003356 333 VWSVSGCRLMSTIR----------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY----GYRLYAIEEGSSER 395 (827)
Q Consensus 333 vWs~~~~~l~~tl~----------~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~----~~~l~~~~~~~~~~ 395 (827)
+||+..+..+-.++ .| ..+|.++.|.+.- ..=++|+ ....|+.. .-++-....-....
T Consensus 179 ~wd~S~~~~~~~~~~~~kv~~~~ash-~qpvlsldyas~~----~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpG 253 (323)
T KOG0322|consen 179 IWDLSTGDKIIQLPQSSKVESPNASH-KQPVLSLDYASSC----DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPG 253 (323)
T ss_pred EEEccCCceeeccccccccccchhhc-cCcceeeeechhh----cCCcCCCccccceeeeeccccCcccccceEEecCCC
Confidence 99998873332222 23 4466777665432 1112222 34444442 22221111111122
Q ss_pred E--EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeC
Q 003356 396 V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (827)
Q Consensus 396 v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~ 472 (827)
+ +.+.+ +|.++|++.|+.++++...+... ...+.-|...|.++|||||...+|.||+
T Consensus 254 v~gvrIRpD~KIlATAGWD~RiRVyswrtl~p--------------------LAVLkyHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHRIRVYSWRTLNP--------------------LAVLKYHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred ccceEEccCCcEEeecccCCcEEEEEeccCCc--------------------hhhhhhhhcceeEEEeCCCCchhhhccC
Confidence 3 55666 89999999999999877554433 4556678899999999999999999999
Q ss_pred CceE-EEEc
Q 003356 473 HGLI-LYDI 480 (827)
Q Consensus 473 dg~i-iwd~ 480 (827)
|+.| +|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 9999 9985
No 212
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.00 E-value=1.7e-08 Score=100.31 Aligned_cols=116 Identities=18% Similarity=0.267 Sum_probs=77.6
Q ss_pred cccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcE-EEEEcCCCCEEEEEec---CCeEEEE
Q 003356 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTR---RGVVELY 283 (827)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~va~sp~~~lla~g~~---dg~v~vw 283 (827)
.+.|.+++|+|..+.++++. +..+..+.+|+........-+.... .+.|||+|++||+|+. .|.|.+|
T Consensus 59 ~~~I~~~~WsP~g~~favi~--------g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~w 130 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIY--------GSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFW 130 (194)
T ss_pred CCceEEEEECcCCCEEEEEE--------ccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEE
Confidence 34588877665544443332 1223456677764221112223334 4999999999999875 4679999
Q ss_pred EcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc------CCcEEEEeccCCeeE
Q 003356 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRLM 342 (827)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~------Dg~v~vWs~~~~~l~ 342 (827)
|+++ .+.+.... |. .++.++|||||++|+++.. |++++||+..|.++.
T Consensus 131 d~~~-~~~i~~~~---------~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 131 DVRK-KKKISTFE---------HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred ECCC-CEEeeccc---------cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeE
Confidence 9986 55554432 33 4789999999999998864 799999999876543
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.00 E-value=4.6e-07 Score=91.32 Aligned_cols=94 Identities=18% Similarity=0.350 Sum_probs=72.5
Q ss_pred EE-EEEcCCCCEEEE-EecCCeEEEEEcCCCCcc--eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCc-EEEE
Q 003356 260 VC-ASIAPEQQILAV-GTRRGVVELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG-LTVW 334 (827)
Q Consensus 260 v~-va~sp~~~lla~-g~~dg~v~vw~~~~~~~~--~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~-v~vW 334 (827)
.| +.-+....+||. |-.-|.|+|-|+.. ... ...+.. |.+.|.|++.+-+|..+|+++..|| ||||
T Consensus 139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~-~~~~~p~~I~A--------H~s~Iacv~Ln~~Gt~vATaStkGTLIRIF 209 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLAS-TKPNAPSIINA--------HDSDIACVALNLQGTLVATASTKGTLIRIF 209 (346)
T ss_pred eEeecCCCCceEEEcCCCccceEEEEEhhh-cCcCCceEEEc--------ccCceeEEEEcCCccEEEEeccCcEEEEEE
Confidence 44 443344566665 44569999998876 322 345555 9999999999999999999999998 6999
Q ss_pred eccCCeeEEEeccc-cccceeeeeecCCC
Q 003356 335 SVSGCRLMSTIRQI-SLSSISSPIVKPNQ 362 (827)
Q Consensus 335 s~~~~~l~~tl~~~-~~~~v~s~~~sp~~ 362 (827)
|..+|.+++.++-+ ....+.+++|||+.
T Consensus 210 dt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 210 DTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred EcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 99999999988743 23568889999886
No 214
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=5.1e-09 Score=112.41 Aligned_cols=255 Identities=12% Similarity=0.121 Sum_probs=148.9
Q ss_pred EEEEecceEEEEEc-cCeEEEeecCC---ce----eEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEE
Q 003356 25 IYFKVNNGLLLIAS-PCHIELWSSSQ---HK----VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (827)
Q Consensus 25 v~fspdg~lla~~~-~~~v~IW~~~~---~~----~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v 96 (827)
.+|-|.--.|++++ ++.|.+|+.-| .. .++-++. .+.|++.+++.++.+..+++++.||+|+.|++
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr------aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR------AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe------cccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 45655555778885 67899999821 11 1222221 35699999999999999999999999999998
Q ss_pred EecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecccCC
Q 003356 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSN 174 (827)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~ 174 (827)
..+.... ...++. .+.+ .+.|+...|..+ +...++|+.++.||+++. |+........ ++
T Consensus 374 p~n~dp~--ds~dp~---------vl~~--~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~--w~~~~~~~~~---f~- 434 (577)
T KOG0642|consen 374 PPNQDPD--DSYDPS---------VLSG--TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRL--WEPTEESPCT---FG- 434 (577)
T ss_pred CCCCCcc--cccCcc---------hhcc--ceeccccceeeeeecccccceeeecCCceEEe--eccCCcCccc---cC-
Confidence 6322111 111110 0111 134455555444 455678999999999987 5433322210 00
Q ss_pred CCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCcc----ccceeecc
Q 003356 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL----KLAEFIKI 250 (827)
Q Consensus 175 ~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~----~~~~~~~~ 250 (827)
. ..+.+.-.++++... ..+....+++...+...+..+ ++......
T Consensus 435 -----------~------------------~~e~g~Plsvd~~ss--~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~ 483 (577)
T KOG0642|consen 435 -----------E------------------PKEHGYPLSVDRTSS--RPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS 483 (577)
T ss_pred -----------C------------------ccccCCcceEeeccc--hhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence 0 000001111110000 000011112221111111111 00000000
Q ss_pred ceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCc
Q 003356 251 DKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (827)
Q Consensus 251 ~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~ 330 (827)
.....-.....+..+|.+.+..++..|+.|+++|..+ +..+..... |...|+++++-|+|-+|++|+.|+.
T Consensus 484 ~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a--------~~~svtslai~~ng~~l~s~s~d~s 554 (577)
T KOG0642|consen 484 PGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT-GKILHSMVA--------HKDSVTSLAIDPNGPYLMSGSHDGS 554 (577)
T ss_pred CcccccCccceEEecCCCCeeEecccCCceecccccc-cccchheee--------ccceecceeecCCCceEEeecCCce
Confidence 0000011222377889999999999999999999888 788877777 9999999999999999999999999
Q ss_pred EEEEeccCCeeEEE
Q 003356 331 LTVWSVSGCRLMST 344 (827)
Q Consensus 331 v~vWs~~~~~l~~t 344 (827)
+++|+.....++..
T Consensus 555 v~l~kld~k~~~~e 568 (577)
T KOG0642|consen 555 VRLWKLDVKTCVLE 568 (577)
T ss_pred eehhhccchheeec
Confidence 99999977665543
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=1.2e-07 Score=96.85 Aligned_cols=217 Identities=17% Similarity=0.167 Sum_probs=124.2
Q ss_pred ccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccc------eeeccce--ecCCCCcEEEEEcCCCCEEEEEecC-Ce
Q 003356 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLA------EFIKIDK--ELGSGDAVCASIAPEQQILAVGTRR-GV 279 (827)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~------~~~~~~~--~~~h~~~v~va~sp~~~lla~g~~d-g~ 279 (827)
..+++++|-|.....+++..-+-+.+...+. +...- .....+. -.||...+.+.|++||..+++++.+ ..
T Consensus 141 rnvtclawRPlsaselavgCr~gIciW~~s~-tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsss 219 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAGICIWSDSR-TLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSS 219 (445)
T ss_pred cceeEEEeccCCcceeeeeecceeEEEEcCc-ccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcce
Confidence 4477888877664444444444444443221 11100 0001111 1567544559999999999998875 68
Q ss_pred EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeec
Q 003356 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (827)
Q Consensus 280 v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~s 359 (827)
|.|||.++ +..+..... -.|.++-+.|||||.+|+++.-|++.++|+..... .+.+
T Consensus 220 i~iWdpdt-g~~~pL~~~--------glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w--t~er------------- 275 (445)
T KOG2139|consen 220 IMIWDPDT-GQKIPLIPK--------GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW--TKER------------- 275 (445)
T ss_pred EEEEcCCC-CCccccccc--------CCCceeeEEEcCCCCEEEEecccceeeeehhcccc--eecc-------------
Confidence 99999998 555443322 46789999999999999999999999999653221 1100
Q ss_pred CCCCCCccceeec-ceeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcc
Q 003356 360 PNQDCKYEPLMSG-TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL 437 (827)
Q Consensus 360 p~~~~~~~~l~sg-~~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~ 437 (827)
..+.+| ++...|++.|..++.+..+ ...++.+.| ++....-. .+.+ |..+--.+ - ++
T Consensus 276 -------w~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~-~~~~--k~~lliaD------L---~e- 334 (445)
T KOG2139|consen 276 -------WILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLR-PQSI--KRVLLIAD------L---QE- 334 (445)
T ss_pred -------eeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccC-cccc--eeeeeecc------c---hh-
Confidence 111122 2556788887777766654 346677777 43332111 1111 11110000 0 00
Q ss_pred eEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCce
Q 003356 438 KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 475 (827)
Q Consensus 438 ~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~ 475 (827)
-.+.-++++. .+++.++||+|.|.|+|+--+.+-
T Consensus 335 --~ti~ag~~l~--cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 335 --VTICAGQRLC--CGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred --hhhhcCcccc--cCccceeeECCCCCEEEEEEcCCc
Confidence 0000111111 467899999999999999866543
No 216
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.99 E-value=2.2e-07 Score=93.62 Aligned_cols=287 Identities=15% Similarity=0.219 Sum_probs=163.9
Q ss_pred ceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEEEEEcCCCCEEEE-EecCCeEEEEEcCCCCcceEEEE
Q 003356 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVS 296 (827)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~va~sp~~~lla~-g~~dg~v~vw~~~~~~~~~~~l~ 296 (827)
+.++.|+|+|+.+++.+.- .+-+-|..+.+.. ..-.+.+.+.|..|...+.+ ...|+.|.+|++.. .+-...+.
T Consensus 11 ~~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-pew~ckId 88 (447)
T KOG4497|consen 11 NPFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-PEWYCKID 88 (447)
T ss_pred CCceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeec-ceeEEEec
Confidence 3467899999998876543 2223333332211 12234455888888876665 46788999999976 44444555
Q ss_pred eecCCCCCCCCCCeEEEEECCCCC-EEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCC---------CCc
Q 003356 297 LYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD---------CKY 366 (827)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spDg~-~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~---------~~~ 366 (827)
. ...++.+++|||||+ .|.+..-|-.|.||++.+..... -.|....+..++|+|++. |+.
T Consensus 89 e--------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~~~kg~~f~~dg~f~ai~sRrDCkd 158 (447)
T KOG4497|consen 89 E--------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKTNVKGYAFHPDGQFCAILSRRDCKD 158 (447)
T ss_pred c--------CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--ecccccCceeEEECCCCceeeeeecccHHH
Confidence 4 577899999999996 55566678899999998765432 233344567788888882 111
Q ss_pred -cceeec---------------ceeEEEccCCceEEEEec-----------CCcceEEEEec-ceeeeecccCCCeeeeE
Q 003356 367 -EPLMSG---------------TSMMQWDEYGYRLYAIEE-----------GSSERVLIFSF-GKCCLNRGVSGMTYARQ 418 (827)
Q Consensus 367 -~~l~sg---------------~~i~~W~~~~~~l~~~~~-----------~~~~~v~~~~~-~~~~~s~~~d~~~~~w~ 418 (827)
-.+.+. .+.+.|.+++.-+..--. +-.-.....++ ++.++.|+.|+.+++-+
T Consensus 159 yv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 159 YVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred HHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 001100 045678887765432211 01111256666 88889999998766522
Q ss_pred -----EEEc--------CCe-EEEE----------------ecCCCCcceE----------------EEeeeceeeccCC
Q 003356 419 -----VIYG--------EDR-LLVV----------------QSEDTDELKI----------------LHLNLPVSYISQN 452 (827)
Q Consensus 419 -----~~~~--------~~~-~~~~----------------~~~d~~~~~w----------------~~~~~p~~~~~~~ 452 (827)
.... +.. ..++ ...+.....| +..+-|+.+.+-.
T Consensus 239 h~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk 318 (447)
T KOG4497|consen 239 HFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK 318 (447)
T ss_pred eeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcc
Confidence 1110 000 0111 1111111112 2222233333333
Q ss_pred CcEEEEEEcCCCCEEEEEeCC--ceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCC--EEEEEEEeeCCCcEEEEEee
Q 003356 453 WPVQHVAASKDGMFLAVAGLH--GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYP 527 (827)
Q Consensus 453 ~~I~~va~SpdG~~lavag~d--g~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~--~li~~~~~~~~~~~~lrly~ 527 (827)
-.+--++||+|..|+|+-... ..+ +||++..+ ++.-.. +.-.|+.+.|... -+++| .+...|.+|.
T Consensus 319 ~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~--l~avLi--Qk~piraf~WdP~~prL~vc-----tg~srLY~W~ 389 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK--LHAVLI--QKHPIRAFEWDPGRPRLVVC-----TGKSRLYFWA 389 (447)
T ss_pred cccceeeecCCceEEeeecCCCCceEEEEechhhh--hhhhhh--hccceeEEEeCCCCceEEEE-----cCCceEEEEc
Confidence 346789999999999987654 344 88987654 443333 2335889999843 55655 1223355555
Q ss_pred C
Q 003356 528 R 528 (827)
Q Consensus 528 ~ 528 (827)
.
T Consensus 390 p 390 (447)
T KOG4497|consen 390 P 390 (447)
T ss_pred C
Confidence 4
No 217
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=3.7e-08 Score=100.86 Aligned_cols=218 Identities=14% Similarity=0.147 Sum_probs=136.9
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEe
Q 003356 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWS 335 (827)
Q Consensus 258 ~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs 335 (827)
++|. +..+|....+|+.+.+|.|.+||..+...++..+-. .+......++.|.| .-.+|++.+..+++-+||
T Consensus 150 ~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~------AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D 223 (609)
T KOG4227|consen 150 GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP------ANSGKNFYTAEFHPETPALILVNSETGGPNVFD 223 (609)
T ss_pred cceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee------cCCCccceeeeecCCCceeEEeccccCCCCcee
Confidence 4777 999999999999999999999999873323332211 01445678899999 466889999999999999
Q ss_pred ccCCee-------EEEeccccccceeeeeecCCCCCCccceee---cceeEEEccCCceEEEEecCCcc-------eEEE
Q 003356 336 VSGCRL-------MSTIRQISLSSISSPIVKPNQDCKYEPLMS---GTSMMQWDEYGYRLYAIEEGSSE-------RVLI 398 (827)
Q Consensus 336 ~~~~~l-------~~tl~~~~~~~v~s~~~sp~~~~~~~~l~s---g~~i~~W~~~~~~l~~~~~~~~~-------~v~~ 398 (827)
..-... ...|... ...-.+..|+|+| ..+++ +..-+.++.-+.++...-..|.. .+..
T Consensus 224 ~R~~~~~~~~~~~~~~L~~~-~~~~M~~~~~~~G----~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS 298 (609)
T KOG4227|consen 224 RRMQARPVYQRSMFKGLPQE-NTEWMGSLWSPSG----NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKS 298 (609)
T ss_pred eccccchHHhhhccccCccc-chhhhheeeCCCC----CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeee
Confidence 853220 1112111 0112345678877 44432 12345566655555444333322 2333
Q ss_pred Eec--ceeeeecccCCCeeeeEEEEcCCeEEEE-ecCCCCcceE--EEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCC
Q 003356 399 FSF--GKCCLNRGVSGMTYARQVIYGEDRLLVV-QSEDTDELKI--LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (827)
Q Consensus 399 ~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~-~~~d~~~~~w--~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~d 473 (827)
..| ...+++|+.+-.+++|.+....+.--+. -|.|...+-- -.-+-...+.+|..-+..+.|+|....|++.|-.
T Consensus 299 ~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE 378 (609)
T KOG4227|consen 299 MTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVE 378 (609)
T ss_pred eeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchh
Confidence 344 4568899999999999876544321111 0222211110 0111234567899989999999999999999999
Q ss_pred ceE-EEEcCCCeEE
Q 003356 474 GLI-LYDIRQKKWR 486 (827)
Q Consensus 474 g~i-iwd~~t~~w~ 486 (827)
..+ +|+.....|.
T Consensus 379 ~~~KlWS~~r~P~~ 392 (609)
T KOG4227|consen 379 NSFKLWSDHRLPWS 392 (609)
T ss_pred hheeccccccCCcc
Confidence 988 9987666564
No 218
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=7.5e-08 Score=103.51 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=106.8
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCC-----eEEEEECCCCCEEEEEEcCCcE
Q 003356 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP-----VSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 258 ~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~-----V~~l~~spDg~~Lasg~~Dg~v 331 (827)
..+. +.+|+-..+||+|+.||.|..||-.+ .....++..... -..|.+. |++++|+.||-.+++|..+|.+
T Consensus 176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v 252 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV 252 (703)
T ss_pred ccceeeeecCccceEEecccCceEEEecchh-hhhheeeecccc--cCCCccccccCcceEEEecCCceeEEeeccCCcE
Confidence 4555 99999999999999999999999887 444444443211 0124444 9999999999999999999999
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccC
Q 003356 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVS 411 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d 411 (827)
.++|+...+.+..-.....-++..+.|.+.+.. ..+++. ..
T Consensus 253 ~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q--~~v~S~-------------------------------------Dk 293 (703)
T KOG2321|consen 253 LIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ--NKVVSM-------------------------------------DK 293 (703)
T ss_pred EEEEcccCCceeecccCCccceeeecccccCCC--ceEEec-------------------------------------ch
Confidence 999998776543322211223333333332100 111111 11
Q ss_pred CCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcC----CCeEE
Q 003356 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR----QKKWR 486 (827)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~----t~~w~ 486 (827)
..+++|+-..+.. -.......++..+++-|++-.+.+|..++.+ .|=+. .-+|.
T Consensus 294 ~~~kiWd~~~Gk~---------------------~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrWC 352 (703)
T KOG2321|consen 294 RILKIWDECTGKP---------------------MASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRWC 352 (703)
T ss_pred HHhhhcccccCCc---------------------eeeccccCCcCceeeecCCceEEEecCCCcceeEEccccCCCchhh
Confidence 2345555433332 2223333457788999999999999999988 55442 34787
Q ss_pred ee
Q 003356 487 VF 488 (827)
Q Consensus 487 ~f 488 (827)
.|
T Consensus 353 Sf 354 (703)
T KOG2321|consen 353 SF 354 (703)
T ss_pred hH
Confidence 66
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.97 E-value=4.4e-08 Score=97.39 Aligned_cols=98 Identities=22% Similarity=0.345 Sum_probs=76.0
Q ss_pred CCcEE-EEEcCCCCEEEEE--ecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC---Cc
Q 003356 257 GDAVC-ASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RG 330 (827)
Q Consensus 257 ~~~v~-va~sp~~~lla~g--~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D---g~ 330 (827)
...+. ++|+|+|+.+|+. ..++.|.+||++ ...+..+ +.+++..+.|||+|++||+|+.+ |.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~----------~~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSF----------GTQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEee----------cCCCceEEEECCCCCEEEEEEccCCCcE
Confidence 33466 9999999987664 467899999996 3444443 35678899999999999998753 56
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 003356 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 331 v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
+.+||+...+.+.+.... .++.++|+|+| +.+++..
T Consensus 127 l~~wd~~~~~~i~~~~~~---~~t~~~WsPdG----r~~~ta~ 162 (194)
T PF08662_consen 127 LEFWDVRKKKKISTFEHS---DATDVEWSPDG----RYLATAT 162 (194)
T ss_pred EEEEECCCCEEeeccccC---cEEEEEEcCCC----CEEEEEE
Confidence 999999988888776532 47888999999 7777665
No 220
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.94 E-value=8.1e-09 Score=102.16 Aligned_cols=209 Identities=14% Similarity=0.192 Sum_probs=129.1
Q ss_pred hhhcCcccEEEEcCCcc-----EEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe
Q 003356 64 VQREGENLQAVWSPDTK-----LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI 138 (827)
Q Consensus 64 ~~~~G~~~~v~wSPDg~-----~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~ 138 (827)
+++.=+.+.+.|.||.. .||+ ++.+||+|.+........... .+ ..... .....++++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLAT--s~D~LRlWri~~ee~~~~~~~---------~L--~~~kn---s~~~aPlTSF 156 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLAT--SSDFLRLWRIGDEESRVELQS---------VL--NNNKN---SEFCAPLTSF 156 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhc--ccCeEEEEeccCcCCceehhh---------hh--ccCcc---cccCCccccc
Confidence 44445678999999995 3443 445999999975432221100 00 00000 0112234444
Q ss_pred e---cCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEE
Q 003356 139 V---SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (827)
Q Consensus 139 ~---~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 215 (827)
- .+.++|.+++-|-+..+ |+.+..... .++..+..++..|.+++
T Consensus 157 DWne~dp~~igtSSiDTTCTi--Wdie~~~~~-------------------------------~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 157 DWNEVDPNLIGTSSIDTTCTI--WDIETGVSG-------------------------------TVKTQLIAHDKEVYDIA 203 (364)
T ss_pred ccccCCcceeEeecccCeEEE--EEEeecccc-------------------------------ceeeEEEecCcceeEEE
Confidence 2 34566666666776665 554432111 11233456677788888
Q ss_pred EcCCcceEEEEEeCCcEEEEeeccCccccceeeccce---e---cC-CCCcEEEEEcC-CCCEEEEEecCC-eEEEEEcC
Q 003356 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---E---LG-SGDAVCASIAP-EQQILAVGTRRG-VVELYDLA 286 (827)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~---~---~~-h~~~v~va~sp-~~~lla~g~~dg-~v~vw~~~ 286 (827)
|.... -+++++.+.||.++.+|+...+. . .. +..-.+++||+ |-+++|+...|+ .|.+-|++
T Consensus 204 f~~~s---------~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 204 FLKGS---------RDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred eccCc---------cceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 65533 12334444455556566543221 1 11 33445589987 467899887775 79999999
Q ss_pred CCCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccC
Q 003356 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~ 338 (827)
.....+.++++ |.+.|+.++|.| ....|+++++|..+-+||+..
T Consensus 275 ~P~tpva~L~~--------H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 275 VPCTPVARLRN--------HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCcceehhhc--------CcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 87777888888 999999999999 566999999999999999964
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=2.4e-07 Score=104.93 Aligned_cols=198 Identities=14% Similarity=0.121 Sum_probs=114.5
Q ss_pred ecCCCCcEE-EEEcCCCCEEEEEec---CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEE-EEEc
Q 003356 253 ELGSGDAVC-ASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWK 327 (827)
Q Consensus 253 ~~~h~~~v~-va~sp~~~lla~g~~---dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~La-sg~~ 327 (827)
+..|...+. .+|+|||+.||..+. +..|.+||+.+ +.. +.+.. +.+.+.+.+|||||+.|+ +.+.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~~-~~l~~--------~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQR-ELVGN--------FPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-CcE-EEeec--------CCCcccCcEECCCCCEEEEEEec
Confidence 344555555 999999999998764 46899999976 433 33443 567788899999999776 5555
Q ss_pred CCc--EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc------eeEEEccCCceEEEEecCCcceE--E
Q 003356 328 SRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERV--L 397 (827)
Q Consensus 328 Dg~--v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~i~~W~~~~~~l~~~~~~~~~~v--~ 397 (827)
++. |.+||+.++.+ ..+..+ .....++.|+|++ ..++..+ .+..|+..+++......+ ...+ .
T Consensus 267 ~g~~~Iy~~d~~~~~~-~~Lt~~-~~~~~~~~~spDG----~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~ 339 (435)
T PRK05137 267 GGNTDIYTMDLRSGTT-TRLTDS-PAIDTSPSYSPDG----SQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTP 339 (435)
T ss_pred CCCceEEEEECCCCce-EEccCC-CCccCceeEcCCC----CEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCe
Confidence 555 77778887764 334433 3345678999998 5444222 455666666544333221 1112 3
Q ss_pred EEec-ceeeeecccCC-CeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCc-
Q 003356 398 IFSF-GKCCLNRGVSG-MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG- 474 (827)
Q Consensus 398 ~~~~-~~~~~s~~~d~-~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg- 474 (827)
.+++ ++.++..+.++ ..++ +++...... .........+...+|||||+.|+..+.++
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i----------~~~d~~~~~----------~~~lt~~~~~~~p~~spDG~~i~~~~~~~~ 399 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSI----------GVMKPDGSG----------ERILTSGFLVEGPTWAPNGRVIMFFRQTPG 399 (435)
T ss_pred EECCCCCEEEEEEcCCCceEE----------EEEECCCCc----------eEeccCCCCCCCCeECCCCCEEEEEEccCC
Confidence 3444 55554433221 1122 222110000 01111122356789999999988765532
Q ss_pred -----eE-EEEcCCCeEEe
Q 003356 475 -----LI-LYDIRQKKWRV 487 (827)
Q Consensus 475 -----~i-iwd~~t~~w~~ 487 (827)
.+ ++|+.++.-+.
T Consensus 400 ~~~~~~L~~~dl~g~~~~~ 418 (435)
T PRK05137 400 SGGAPKLYTVDLTGRNERE 418 (435)
T ss_pred CCCcceEEEEECCCCceEE
Confidence 34 66776654443
No 222
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.1e-08 Score=109.08 Aligned_cols=160 Identities=21% Similarity=0.255 Sum_probs=113.9
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCC
Q 003356 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (827)
Q Consensus 306 h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~ 382 (827)
|+|-|+|++|+.||.+||+|++|-.+.|||.+..++++.+...++..|-++.|-|.. +.+.+++|. .+++++...
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t--nnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT--NNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC--CCeEEEeccCcceEEEEeccc
Confidence 999999999999999999999999999999999999998876668889999998854 346777776 778888763
Q ss_pred c----------eEEEEecCCcceEEEE--ec--ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeece--
Q 003356 383 Y----------RLYAIEEGSSERVLIF--SF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV-- 446 (827)
Q Consensus 383 ~----------~l~~~~~~~~~~v~~~--~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~-- 446 (827)
. +....+.-|..+|..+ .+ ...+.+++.||+++-+|+...... . +...+|.
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c-----~--------p~~~~~~~l 193 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC-----N--------PDEDCPSIL 193 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC-----C--------ccccccHHH
Confidence 1 1122233345555222 22 367788899999988887653220 0 0000121
Q ss_pred -eeccCCCcEEEEEEcCC-CCEEEEEeCCceE-EEEc
Q 003356 447 -SYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 447 -~~~~~~~~I~~va~Spd-G~~lavag~dg~i-iwd~ 480 (827)
.|...--...++.+||. -.++|+||.|-++ +||.
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 12222234678999986 5689999999999 9995
No 223
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.90 E-value=7.9e-08 Score=96.69 Aligned_cols=163 Identities=12% Similarity=0.095 Sum_probs=111.9
Q ss_pred eEEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccE
Q 003356 134 SVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (827)
Q Consensus 134 ~v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (827)
+|+|. ..|+..++++..+..++++.+.+...-.. .-.+..++..+
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~---------------------------------~htls~Hd~~v 58 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP---------------------------------AHTLSEHDKIV 58 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCcee---------------------------------ceehhhhCcce
Confidence 45554 45667788888899999998876542111 01234566778
Q ss_pred EEEEEcCCcceEEEEEeCCcEEEEee-ccCccccceeeccceecCCC-CcEEEEEcCCCCEEEEEecCCeEEEEEcCCCC
Q 003356 212 IWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKELGSG-DAVCASIAPEQQILAVGTRRGVVELYDLAESA 289 (827)
Q Consensus 212 ~~i~~~~~~~~~~~~s~dG~~~~~~~-~~~~~~~~~~~~~~~~~~h~-~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~ 289 (827)
+.++|.+..+.++.++.|...++... .+++ |... . .+..+. .++|+.|+|..+.+|+|+....|.||-.+.+.
T Consensus 59 tgvdWap~snrIvtcs~drnayVw~~~~~~~---Wkpt-l-vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN 133 (361)
T KOG1523|consen 59 TGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT---WKPT-L-VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN 133 (361)
T ss_pred eEEeecCCCCceeEccCCCCccccccCCCCe---eccc-e-eEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc
Confidence 88998888887777777777777555 2322 2110 0 012344 45569999999999999999999999887622
Q ss_pred cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC
Q 003356 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~ 339 (827)
. .-..+..+. .+...|++++|.|++-+||+|+.|+..||++.+-.
T Consensus 134 d-WWVsKhikk----PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK 178 (361)
T KOG1523|consen 134 D-WWVSKHIKK----PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIK 178 (361)
T ss_pred c-eehhhhhCC----ccccceeeeeccCCcceecccccCcceeEEEEeee
Confidence 2 111110000 16678999999999999999999999999998643
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=1.4e-07 Score=106.79 Aligned_cols=213 Identities=15% Similarity=0.138 Sum_probs=114.1
Q ss_pred CcccEEEEcCCccEEEEEecC---cEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCe
Q 003356 68 GENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (827)
Q Consensus 68 G~~~~v~wSPDg~~lav~t~d---g~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~ 144 (827)
+.+.+.+|||||+.||..+.+ ..|.+|++..+....... +.+.. ....+++|++.
T Consensus 204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~---------------------~~g~~-~~~~~SpDG~~ 261 (433)
T PRK04922 204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS---------------------FRGIN-GAPSFSPDGRR 261 (433)
T ss_pred CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc---------------------CCCCc-cCceECCCCCE
Confidence 456789999999999987743 368888875433211100 01111 12256788888
Q ss_pred EEEE-ecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceE
Q 003356 145 MLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (827)
Q Consensus 145 llv~-t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (827)
+++. +.+|.-.++.|+........+ ...... ...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~l-----------------------------------t~~~~~----------~~~ 296 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRL-----------------------------------TNHFGI----------DTE 296 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEEC-----------------------------------ccCCCC----------ccc
Confidence 7654 455543344454332211100 000001 111
Q ss_pred EEEEeCCcEEEEeec-cCccccc--eeeccc--eecCCCCcE-EEEEcCCCCEEEEEecCC---eEEEEEcCCCCcceEE
Q 003356 224 FVLYSNGQLMSCSVS-KKGLKLA--EFIKID--KELGSGDAV-CASIAPEQQILAVGTRRG---VVELYDLAESASLIRT 294 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~-~~~~~~~--~~~~~~--~~~~h~~~v-~va~sp~~~lla~g~~dg---~v~vw~~~~~~~~~~~ 294 (827)
..+++||+.++..++ ++...+| +...++ .+..+.... ..+|||||+.||..+.++ .|.+|++.+ +... .
T Consensus 297 ~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~ 374 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-T 374 (433)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-E
Confidence 346777776665554 2333333 322221 112222223 389999999999876543 689999876 4332 2
Q ss_pred EEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC---CcEEEEeccCCeeEEEeccccccceeeeeecC
Q 003356 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (827)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D---g~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp 360 (827)
+. +.......+|+|||+.|+..+.+ +.+.++++.++. ...+..+ ...+..++|+|
T Consensus 375 Lt---------~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~-~~~l~~~-~g~~~~p~wsp 432 (433)
T PRK04922 375 LT---------PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV-RQRLVSA-DGEVREPAWSP 432 (433)
T ss_pred CC---------CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEEcccC-CCCCCCCccCC
Confidence 22 22234567999999988777653 357777886643 3444332 23345555554
No 225
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.85 E-value=3.9e-07 Score=91.26 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=52.5
Q ss_pred EEEEecceEEEEEccCeEEEeecCCce--eEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 003356 25 IYFKVNNGLLLIASPCHIELWSSSQHK--VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (827)
Q Consensus 25 v~fspdg~lla~~~~~~v~IW~~~~~~--~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~ 98 (827)
++.+.||++||++.+..|.|-..+ .. ..++...-. -+.+-.-..++||||+..||.+.+.|+|++||+..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~-Ddf~si~~kcqVp---kD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAK-DDFSSIIGKCQVP---KDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEecc-CCchheeEEEecC---CCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 457899999999999999999874 32 122322111 12234446899999999999999999999999864
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.84 E-value=4.7e-09 Score=109.96 Aligned_cols=225 Identities=16% Similarity=0.181 Sum_probs=159.5
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 257 ~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
.++..+.++.+|+.++.|+.-|.|..+|..+ ..+...+.. ...|.++.|-.+.+++|++-. +-+.|||-
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~v---------~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~ 198 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEINV---------METVRDVTFLHNEQFFAVAQK-KYVYVYDN 198 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeeeeh---------hhhhhhhhhhcchHHHHhhhh-ceEEEecC
Confidence 4567799999999999999999999999988 666666664 567999999999999999987 78999998
Q ss_pred cCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceE--EEEec-ceeeeeccc
Q 003356 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGV 410 (827)
Q Consensus 337 ~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~ 410 (827)
.|-. ++.++.+ ..|..+.|-|.. ..+++++ -..--|...++++..+....+.+ +.-.+ .-.+-.|..
T Consensus 199 ~GtE-lHClk~~--~~v~rLeFLPyH----fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs 271 (545)
T KOG1272|consen 199 NGTE-LHCLKRH--IRVARLEFLPYH----FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS 271 (545)
T ss_pred CCcE-Eeehhhc--Cchhhhcccchh----heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC
Confidence 7654 5556655 467788888876 6666655 23334666777766554333333 44444 444557888
Q ss_pred CCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeC
Q 003356 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG 489 (827)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~ 489 (827)
.|++.+|.-...+. .-..+.|.+||+++|+.++|+|+|++|.|..+ |||++.-+ .+.
T Consensus 272 nGtVSlWSP~skeP--------------------LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-ql~- 329 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEP--------------------LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-QLH- 329 (545)
T ss_pred CceEEecCCCCcch--------------------HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-ccc-
Confidence 89999997433222 23567899999999999999999999999999 99996532 110
Q ss_pred CccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeC
Q 003356 490 DITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (827)
Q Consensus 490 ~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~ 528 (827)
+....+....+...+..++++++- ..+.+|.-
T Consensus 330 --t~~tp~~a~~ls~SqkglLA~~~G-----~~v~iw~d 361 (545)
T KOG1272|consen 330 --TYRTPHPASNLSLSQKGLLALSYG-----DHVQIWKD 361 (545)
T ss_pred --eeecCCCccccccccccceeeecC-----Ceeeeehh
Confidence 001111233466777777777442 34666655
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=7.4e-07 Score=100.54 Aligned_cols=96 Identities=23% Similarity=0.314 Sum_probs=60.7
Q ss_pred CCCCcEE-EEEcCCCCEEEEEecC---CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEE-EEEcCC
Q 003356 255 GSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKSR 329 (827)
Q Consensus 255 ~h~~~v~-va~sp~~~lla~g~~d---g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~La-sg~~Dg 329 (827)
.+...+. .+|+|||+.||..+.+ ..|.+||+.+ ++.. .+.. ..+.+.+.+|||||+.|+ +.+.+|
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~~-~l~~--------~~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRRR-VVAN--------FKGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCEE-Eeec--------CCCCccceEECCCCCEEEEEEccCC
Confidence 4445554 8999999999987743 3699999976 4433 2332 345567899999999887 567778
Q ss_pred cEEEEec--cCCeeEEEeccccccceeeeeecCCC
Q 003356 330 GLTVWSV--SGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 330 ~v~vWs~--~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
...+|.+ .++. ...+..+ .....++.|+||+
T Consensus 263 ~~~Iy~~d~~~~~-~~~lt~~-~~~~~~~~wSpDG 295 (427)
T PRK02889 263 NSQIYTVNADGSG-LRRLTQS-SGIDTEPFFSPDG 295 (427)
T ss_pred CceEEEEECCCCC-cEECCCC-CCCCcCeEEcCCC
Confidence 7777754 4443 3333322 1223344555554
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.80 E-value=1.7e-08 Score=105.86 Aligned_cols=201 Identities=15% Similarity=0.179 Sum_probs=124.1
Q ss_pred hhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEee-cCC
Q 003356 64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-SDN 142 (827)
Q Consensus 64 ~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~-~d~ 142 (827)
+.+||++ .+.++.+|+.++.+...|+|-.+|..+..-..-. ...+ .|..+. ...
T Consensus 127 l~eFGPY-~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---------------~v~E---------tv~Dv~~LHn 181 (545)
T KOG1272|consen 127 LPEFGPY-HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---------------NVME---------TVRDVTFLHN 181 (545)
T ss_pred ccccCCe-eeeecCCccEEEecCCccceeeeecccceeeeee---------------ehhh---------hhhhhhhhcc
Confidence 4578885 8999999999999999999999998654321100 0011 011111 012
Q ss_pred CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcce
Q 003356 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (827)
Q Consensus 143 ~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (827)
+.+++......+++|+=+|.... |+ .....+..++|
T Consensus 182 eq~~AVAQK~y~yvYD~~GtElH------------Cl--------------------------k~~~~v~rLeF------ 217 (545)
T KOG1272|consen 182 EQFFAVAQKKYVYVYDNNGTELH------------CL--------------------------KRHIRVARLEF------ 217 (545)
T ss_pred hHHHHhhhhceEEEecCCCcEEe------------eh--------------------------hhcCchhhhcc------
Confidence 22222233344555433222111 11 11223444453
Q ss_pred EEEEEeCCcEEEEeeccCccccceeecccee----cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEe
Q 003356 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
.|---++++++..+-++--|...++.. .+ .+.+. +.-||-...+-+|..+|+|.+|.-.. .+++..+-.
T Consensus 218 ----LPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-kePLvKiLc 291 (545)
T KOG1272|consen 218 ----LPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILC 291 (545)
T ss_pred ----cchhheeeecccCCceEEEeechhhhhHHHHcc-CCccchhhcCCccceEEEcCCCceEEecCCCC-cchHHHHHh
Confidence 333333444444444443444444332 12 23444 88999999999999999999999776 555555555
Q ss_pred ecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
|.++|.++++.++|+++|+++.|..++|||+..-....++..
T Consensus 292 --------H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 292 --------HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred --------cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 999999999999999999999999999999987665555443
No 229
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.78 E-value=2.2e-06 Score=91.87 Aligned_cols=255 Identities=11% Similarity=0.100 Sum_probs=141.1
Q ss_pred EEecceEEEEE-c----------cCeEEEeecCCceeEEEEEEeChHhhhhcCcc-cEEEEcCCccEEEEEe-c-CcEEE
Q 003356 27 FKVNNGLLLIA-S----------PCHIELWSSSQHKVRLGKYKRDSESVQREGEN-LQAVWSPDTKLIAVVT-S-SLYLH 92 (827)
Q Consensus 27 fspdg~lla~~-~----------~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~-~~v~wSPDg~~lav~t-~-dg~l~ 92 (827)
+||||+.+.++ + ++.|.|||. +....+..+.-..+.-..-|.. ...++||||++|++.. + ++.|-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~-~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDP-QTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEEC-ccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEE
Confidence 99999876665 4 478999999 4777777664322211111222 3688999999999877 4 68999
Q ss_pred EEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeeccc
Q 003356 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (827)
Q Consensus 93 l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~ 172 (827)
++|++..+..... ...++ ..+.. + .....++-+.||....+..+.+....
T Consensus 132 VvD~~~~kvv~ei---------------------~vp~~-~~vy~-t-~e~~~~~~~~Dg~~~~v~~d~~g~~~------ 181 (352)
T TIGR02658 132 VVDLEGKAFVRMM---------------------DVPDC-YHIFP-T-ANDTFFMHCRDGSLAKVGYGTKGNPK------ 181 (352)
T ss_pred EEECCCCcEEEEE---------------------eCCCC-cEEEE-e-cCCccEEEeecCceEEEEecCCCceE------
Confidence 9999755421111 11110 01111 1 11222233455555544443221110
Q ss_pred CCCCcccceecc-cCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCc---cccceee
Q 003356 173 SNDSSVAALSHH-FPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG---LKLAEFI 248 (827)
Q Consensus 173 p~~~~~i~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~---~~~~~~~ 248 (827)
....++ ..+.+. ...+. .|.+..+..++++..|+++++...... ...|...
T Consensus 182 ------~~~~~vf~~~~~~-------------v~~rP------~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~ 236 (352)
T TIGR02658 182 ------IKPTEVFHPEDEY-------------LINHP------AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAF 236 (352)
T ss_pred ------EeeeeeecCCccc-------------cccCC------ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeec
Confidence 001010 000000 00000 122222344556666666665422211 1234332
Q ss_pred cccee-cC-CCCcEE-EEEcCCCCEEEEEe----------cCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEE
Q 003356 249 KIDKE-LG-SGDAVC-ASIAPEQQILAVGT----------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (827)
Q Consensus 249 ~~~~~-~~-h~~~v~-va~sp~~~lla~g~----------~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~ 315 (827)
..... .+ ...... ++++|+++.+.+.. ..+.|.++|..+ .+.+..+.. ...+..+++
T Consensus 237 ~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v---------G~~~~~iav 306 (352)
T TIGR02658 237 TEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL---------GHEIDSINV 306 (352)
T ss_pred cccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC---------CCceeeEEE
Confidence 21110 01 112222 89999999888853 124799999887 777777664 347899999
Q ss_pred CCCCC-EEEEEE-cCCcEEEEeccCCeeEEEecc
Q 003356 316 TPDNS-AFAVGW-KSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 316 spDg~-~Lasg~-~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
||||+ +|.+.. .++.|.+.|+.+++.+.++..
T Consensus 307 S~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 307 SQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred CCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence 99999 887666 578899999999998888743
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=4.6e-07 Score=102.16 Aligned_cols=207 Identities=14% Similarity=0.126 Sum_probs=117.3
Q ss_pred eEEEEEeCCcEEEEeec---cCccccceeeccce--ecCCCCcEE-EEEcCCCCEEEEE-ecCC--eEEEEEcCCCCcce
Q 003356 222 LLFVLYSNGQLMSCSVS---KKGLKLAEFIKIDK--ELGSGDAVC-ASIAPEQQILAVG-TRRG--VVELYDLAESASLI 292 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~---~~~~~~~~~~~~~~--~~~h~~~v~-va~sp~~~lla~g-~~dg--~v~vw~~~~~~~~~ 292 (827)
....++|||+.++..+. +..+.+++...++. +........ .+|||||+.||.. +.+| .|.+||+++ +..
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~~- 279 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI- 279 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CCE-
Confidence 34557788876665432 22344555544422 222222223 7999999988865 4455 588888876 443
Q ss_pred EEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC-CcEEEE--eccCCeeEEEeccccccceeeeeecCCCCCCccce
Q 003356 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVW--SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (827)
Q Consensus 293 ~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D-g~v~vW--s~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l 369 (827)
..+.. +...+...+|+|||+.|+..+.+ +...+| ++.++.. ..+... ......+.|+|++ ..+
T Consensus 280 ~~lt~--------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~SpDG----~~I 345 (429)
T PRK03629 280 RQVTD--------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDG----KFM 345 (429)
T ss_pred EEccC--------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC-CCCccCEEECCCC----CEE
Confidence 33332 34567889999999988877654 445555 5666543 333332 2235578899998 554
Q ss_pred eecc------eeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEe
Q 003356 370 MSGT------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (827)
Q Consensus 370 ~sg~------~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~ 442 (827)
+... .+..|+..+++...........-..+++ ++.++..+.++....+.+..-+.+
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~----------------- 408 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR----------------- 408 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC-----------------
Confidence 3321 4667887776654333222111234555 666766666654333222221111
Q ss_pred eeceeeccCCCcEEEEEEcC
Q 003356 443 NLPVSYISQNWPVQHVAASK 462 (827)
Q Consensus 443 ~~p~~~~~~~~~I~~va~Sp 462 (827)
.+..+.+|...++..+|||
T Consensus 409 -~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 -FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -CeEECccCCCCcCCcccCC
Confidence 1344556777788888887
No 231
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=3.7e-06 Score=90.93 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=97.8
Q ss_pred CCcEEEEEcCCCC-EEEEEec--CC---------eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEE
Q 003356 257 GDAVCASIAPEQQ-ILAVGTR--RG---------VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (827)
Q Consensus 257 ~~~v~va~sp~~~-lla~g~~--dg---------~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Las 324 (827)
.+.+.+.||+.|. +|+..+. |. ++.+.+++. .. ..+.+ ...|+|.++.|+|+|+-+++
T Consensus 218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~s--~~V~L-------~k~GPVhdv~W~~s~~EF~V 287 (566)
T KOG2315|consen 218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-ES--VSVPL-------LKEGPVHDVTWSPSGREFAV 287 (566)
T ss_pred cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-ce--EEEec-------CCCCCceEEEECCCCCEEEE
Confidence 3455688998876 3333332 33 455554442 12 22222 14899999999999987766
Q ss_pred E--EcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCcccee-ecc-----eeEEEccCCceEEEEecCCcceE
Q 003356 325 G--WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT-----SMMQWDEYGYRLYAIEEGSSERV 396 (827)
Q Consensus 325 g--~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~-sg~-----~i~~W~~~~~~l~~~~~~~~~~v 396 (827)
. ..=..+.|+|..+.. +..+. ..+-+.+.|+|.+ ..++ .|- .+-+||..+.+++.........+
T Consensus 288 vyGfMPAkvtifnlr~~~-v~df~---egpRN~~~fnp~g----~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~ 359 (566)
T KOG2315|consen 288 VYGFMPAKVTIFNLRGKP-VFDFP---EGPRNTAFFNPHG----NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV 359 (566)
T ss_pred EEecccceEEEEcCCCCE-eEeCC---CCCccceEECCCC----CEEEEeecCCCCCceEEEeccchhhccccccCCceE
Confidence 4 556789999998764 33433 3456788899998 5544 332 78899999999998888777788
Q ss_pred EEEec-ceeeeeccc------CCCeeeeEE
Q 003356 397 LIFSF-GKCCLNRGV------SGMTYARQV 419 (827)
Q Consensus 397 ~~~~~-~~~~~s~~~------d~~~~~w~~ 419 (827)
..+++ |+.++|+.. |+.+++|+.
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 89999 888887665 455666653
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.76 E-value=1.7e-06 Score=94.82 Aligned_cols=282 Identities=12% Similarity=0.095 Sum_probs=141.5
Q ss_pred EEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEe-cCcEEEEEEEEecCce
Q 003356 25 IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKS 102 (827)
Q Consensus 25 v~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t-~dg~l~l~~v~~~~~~ 102 (827)
++|+|||+++.++ .++.|.++|.. ....+....-. +.-..+++||||++++++. ..+.+.++|.++-+.
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~-~~~~v~~i~~G-------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~- 112 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLA-TGKVVATIKVG-------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP- 112 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETT-SSSEEEEEE-S-------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-
T ss_pred EEecCCCCEEEEEcCCCeEEEEECC-cccEEEEEecC-------CCcceEEEcCCCCEEEEEecCCCceeEeccccccc-
Confidence 6799999976665 57899999995 66666665321 2235799999999999876 578999999753321
Q ss_pred eecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecCCCeEEEEecC-CcEEEEecCCccCcceeecccCCCCccc
Q 003356 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSD-GSLYSISWKGEFYGAFELVHSSNDSSVA 179 (827)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~~llv~t~d-g~i~~~~w~~~~~~~~~l~~~p~~~~~i 179 (827)
+..+.. .....+.....+.++ ++.+...+++.++ +.+.+++..........
T Consensus 113 ------------v~~I~~---~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~----------- 166 (369)
T PF02239_consen 113 ------------VKTIPT---GGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT----------- 166 (369)
T ss_dssp ------------EEEEE-----EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE-----------
T ss_pred ------------eeeccc---ccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee-----------
Confidence 111111 000111123344454 3455667777765 67766655433111100
Q ss_pred ceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeec-cCccccceeecccee-----
Q 003356 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE----- 253 (827)
Q Consensus 180 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-~~~~~~~~~~~~~~~----- 253 (827)
. ........+. .+++||++++++.. ...+-.++..+.+..
T Consensus 167 -~-----------------------i~~g~~~~D~----------~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 167 -T-----------------------IKVGRFPHDG----------GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp -E-----------------------EE--TTEEEE----------EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred -e-----------------------eccccccccc----------ccCcccceeeecccccceeEEEeeccceEEEEeec
Confidence 0 0001112232 35566665554432 222222332221110
Q ss_pred --cCCCC-----------cEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCC
Q 003356 254 --LGSGD-----------AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS 320 (827)
Q Consensus 254 --~~h~~-----------~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~ 320 (827)
..|.. +++ +.+..+....+.-....+.+|+..+ .+.++++.. ..++ ..++-+||+.
T Consensus 213 g~~p~~~~~~~~php~~g~vw-~~~~~~~~~~~~ig~~~v~v~d~~~-wkvv~~I~~--------~G~g-lFi~thP~s~ 281 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGFGPVW-ATSGLGYFAIPLIGTDPVSVHDDYA-WKVVKTIPT--------QGGG-LFIKTHPDSR 281 (369)
T ss_dssp SSSBEETTEEEEEETTTEEEE-EEEBSSSSEEEEEE--TTT-STTTB-TSEEEEEE---------SSSS---EE--TT-S
T ss_pred cccccccccccccCCCcceEE-eeccccceecccccCCccccchhhc-CeEEEEEEC--------CCCc-ceeecCCCCc
Confidence 11111 122 1122333332222233556677766 778888877 4555 8889999999
Q ss_pred EEEEE----EcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeec---c-eeEEEccCCceEEEEe
Q 003356 321 AFAVG----WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG---T-SMMQWDEYGYRLYAIE 389 (827)
Q Consensus 321 ~Lasg----~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg---~-~i~~W~~~~~~l~~~~ 389 (827)
++.+. .+.++|.|+|..+.+...++.......+..+.|+++|. +.++|. - .+.++|..+.++...+
T Consensus 282 ~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~---~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 282 YVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK---EVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp EEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS---EEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred cEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC---EEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 99998 45589999999998888777643223477889999983 223321 1 5666776666665544
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=1.6e-06 Score=98.14 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=62.6
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecC---CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEE-EEEcC
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS 328 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~d---g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~La-sg~~D 328 (827)
..+...+. .+|+|||+.||..+.+ ..|.+|++.+ +.. ..+.. ..+...+.+|||||+.|+ +.+.+
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~--------~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVAS--------FRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEecc--------CCCCccCceECCCCCEEEEEEeCC
Confidence 34444454 8999999999988743 4799999976 433 22332 345556789999999776 44555
Q ss_pred C--cEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 329 R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 329 g--~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
| .|.+|++.++... .+..+ .....+++|+|++
T Consensus 270 g~~~Iy~~d~~~g~~~-~lt~~-~~~~~~~~~spDG 303 (433)
T PRK04922 270 GNPEIYVMDLGSRQLT-RLTNH-FGIDTEPTWAPDG 303 (433)
T ss_pred CCceEEEEECCCCCeE-ECccC-CCCccceEECCCC
Confidence 5 4999999887643 33332 1223445566655
No 234
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.72 E-value=7.4e-05 Score=90.98 Aligned_cols=217 Identities=20% Similarity=0.221 Sum_probs=122.7
Q ss_pred CcccEEEEEEcCCcceEEEEEeCCcEEEEeecc-CccccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEc
Q 003356 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285 (827)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~ 285 (827)
....|+++.|-+....+++++.+|.++.+..+. .....++.... --.+..+++||||+.+||..+.+|++.+-+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~----vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS----VDSGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE----EcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 346799999999999999999999999873321 11111221110 0123445999999999999999999887432
Q ss_pred CCCCcceE------------------------EEEeec----------CCCC------CCCCCCeEEEEECCCCCEEEEE
Q 003356 286 AESASLIR------------------------TVSLYD----------WGYS------MDDTGPVSCIAWTPDNSAFAVG 325 (827)
Q Consensus 286 ~~~~~~~~------------------------~l~~~~----------~~~~------~~h~~~V~~l~~spDg~~Lasg 325 (827)
+- ..+. .++|.. .... ..+...-..++|..||+++|+.
T Consensus 150 ~f--d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 150 DF--DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred cc--eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 11 1110 111100 0000 0022244679999999999998
Q ss_pred Ec---C---CcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCC--cceEE
Q 003356 326 WK---S---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGS--SERVL 397 (827)
Q Consensus 326 ~~---D---g~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~--~~~v~ 397 (827)
+- + ..+|||+-.| .+..+...- .+-- ..+.|.+.|. ++...+.+ ...|.
T Consensus 228 s~~~~~~~~R~iRVy~ReG-~L~stSE~v-~gLe--------------------~~l~WrPsG~-lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSREG-ELQSTSEPV-DGLE--------------------GALSWRPSGN-LIASSQRLPDRHDVV 284 (928)
T ss_pred EEEcCCCceeEEEEECCCc-eEEeccccC-CCcc--------------------CCccCCCCCC-EEEEEEEcCCCcEEE
Confidence 75 2 4789999874 444332210 1111 2334544432 22222111 11122
Q ss_pred EEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEE
Q 003356 398 IFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLIL 477 (827)
Q Consensus 398 ~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~ii 477 (827)
-|.- +| +..++ ..+|. ......|..++|++|+..||+--.|..-+
T Consensus 285 FfEr---------NG------Lrhge------------------F~l~~--~~~~~~v~~l~Wn~ds~iLAv~~~~~vqL 329 (928)
T PF04762_consen 285 FFER---------NG------LRHGE------------------FTLRF--DPEEEKVIELAWNSDSEILAVWLEDRVQL 329 (928)
T ss_pred EEec---------CC------cEeee------------------EecCC--CCCCceeeEEEECCCCCEEEEEecCCceE
Confidence 1111 00 11111 11121 22345689999999999999998877339
Q ss_pred EEcCCCeEEe
Q 003356 478 YDIRQKKWRV 487 (827)
Q Consensus 478 wd~~t~~w~~ 487 (827)
|-...-.|.+
T Consensus 330 Wt~~NYHWYL 339 (928)
T PF04762_consen 330 WTRSNYHWYL 339 (928)
T ss_pred EEeeCCEEEE
Confidence 9999889975
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.72 E-value=1.8e-05 Score=86.87 Aligned_cols=282 Identities=13% Similarity=0.089 Sum_probs=145.3
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEEEEEcCCCCEEEEEe-cCCeEEEEEcCCCCcceEEEEe
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~va~sp~~~lla~g~-~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
..+.+++||+.+++...++.+.++|..+.+.. ..-..+..+++|+||+++++++ .++++.++|..+ .+.++.+..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~ 118 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPT 118 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE-
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeeccc
Confidence 44678999998888888888888888776543 2224455599999999999876 579999999988 777777765
Q ss_pred ecCCCCCCCCCCeEEEEECCCCCEEEEEEcC-CcEEEEeccCCe--eEEEeccccccceeeeeecCCCCCCccceeecc-
Q 003356 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVSGCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D-g~v~vWs~~~~~--l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~- 373 (827)
...+... ....+..+.-+|+...++..-.| +.|.+-|..... ....+.- ...-....|+|++ +.++.+.
T Consensus 119 ~~~~~~~-~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~--g~~~~D~~~dpdg----ry~~va~~ 191 (369)
T PF02239_consen 119 GGMPVDG-PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV--GRFPHDGGFDPDG----RYFLVAAN 191 (369)
T ss_dssp -EE-TTT-S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTS----SEEEEEEG
T ss_pred ccccccc-cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc--cccccccccCccc----ceeeeccc
Confidence 3222111 34568889899998866666554 555555654432 2222221 1223456778887 6655432
Q ss_pred ---eeEEEccCCceEEEEecC----CcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCC----CcceEEEe
Q 003356 374 ---SMMQWDEYGYRLYAIEEG----SSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT----DELKILHL 442 (827)
Q Consensus 374 ---~i~~W~~~~~~l~~~~~~----~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~----~~~~w~~~ 442 (827)
.+.+++..++++...... |..+...+...+ .-.+|............-+.+. +...|+.+
T Consensus 192 ~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~---------~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv 262 (369)
T PF02239_consen 192 GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG---------FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV 262 (369)
T ss_dssp GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT---------TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE
T ss_pred ccceeEEEeeccceEEEEeeccccccccccccccCCC---------cceEEeeccccceecccccCCccccchhhcCeEE
Confidence 677888888877655431 223333222100 0011222221111111111111 12345444
Q ss_pred eeceeeccCCCcEEEEEEcCCCCEEEEE----eCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEe--CCEEEEEEEe
Q 003356 443 NLPVSYISQNWPVQHVAASKDGMFLAVA----GLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYI 515 (827)
Q Consensus 443 ~~p~~~~~~~~~I~~va~SpdG~~lava----g~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~~~~ 515 (827)
+-. .....+ ..+..+||++++++. ...+.+ ++|.++.+-. ..........+..+.|. ++.+.++.+.
T Consensus 263 ~~I---~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~--~~i~~~~~~~~~h~ef~~dG~~v~vS~~~ 336 (369)
T PF02239_consen 263 KTI---PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV--KTITPGPGKRVVHMEFNPDGKEVWVSVWD 336 (369)
T ss_dssp EEE---E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE--E-HHHHHT--EEEEEE-TTSSEEEEEEE-
T ss_pred EEE---ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCccee--EEEeccCCCcEeccEECCCCCEEEEEEec
Confidence 322 223344 678889999999999 444778 9999886421 11111111125567776 4455555454
Q ss_pred eCCCcEEEEEeeCC
Q 003356 516 DSSNTYELLFYPRY 529 (827)
Q Consensus 516 ~~~~~~~lrly~~~ 529 (827)
... +|.+|...
T Consensus 337 ~~~---~i~v~D~~ 347 (369)
T PF02239_consen 337 GNG---AIVVYDAK 347 (369)
T ss_dssp -TT---EEEEEETT
T ss_pred CCC---EEEEEECC
Confidence 322 78888775
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=6.6e-07 Score=100.90 Aligned_cols=151 Identities=15% Similarity=0.165 Sum_probs=91.3
Q ss_pred EEEEEeCCcEEEEeecc---Cccccceeecccee--cCCCCc-EEEEEcCCCCEEEE-EecCCeEEEEEcCCCCcceEEE
Q 003356 223 LFVLYSNGQLMSCSVSK---KGLKLAEFIKIDKE--LGSGDA-VCASIAPEQQILAV-GTRRGVVELYDLAESASLIRTV 295 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~---~~~~~~~~~~~~~~--~~h~~~-v~va~sp~~~lla~-g~~dg~v~vw~~~~~~~~~~~l 295 (827)
...++|||+.++..+.+ ..+.+|+...++.. ...... ...+|+|||+.||. .+.+|...+|.++..+...+.+
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l 279 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL 279 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC
Confidence 34578888877765542 23566776655332 222222 34899999998874 6778888888765423334444
Q ss_pred EeecCCCCCCCCCCeEEEEECCCCCEEEEEEc-CCcEEEEec--cCCeeEEEeccccccceeeeeecCCCCCCccceeec
Q 003356 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSV--SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (827)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~-Dg~v~vWs~--~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg 372 (827)
.. +.+.+....|||||+.|+..+. +|...+|.+ .++... .+...+ ....++.|+|++ +.++..
T Consensus 280 t~--------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g-~~~~~~~~SpDG----~~Ia~~ 345 (427)
T PRK02889 280 TQ--------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTG-SYNTSPRISPDG----KLLAYI 345 (427)
T ss_pred CC--------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCC-CCcCceEECCCC----CEEEEE
Confidence 33 4555677899999998876554 466777765 444322 221111 223467899998 554422
Q ss_pred c------eeEEEccCCceEEE
Q 003356 373 T------SMMQWDEYGYRLYA 387 (827)
Q Consensus 373 ~------~i~~W~~~~~~l~~ 387 (827)
. .+.+|+..+++...
T Consensus 346 s~~~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQVTA 366 (427)
T ss_pred EccCCcEEEEEEECCCCCeEE
Confidence 2 47788877665443
No 237
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=5.2e-05 Score=83.91 Aligned_cols=218 Identities=14% Similarity=0.136 Sum_probs=135.0
Q ss_pred hhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCC-CCCCCceeeeEeeEeecccccccccceEEEeecCCC
Q 003356 65 QREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGG-KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK 143 (827)
Q Consensus 65 ~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~ 143 (827)
-.++...+++|.....+||++++||-+++..+.+........+ .... .+.....++++..+|.-+..+..
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~s---------nLsmNQtLeGH~~sV~vvTWNe~ 82 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAAS---------NLSMNQTLEGHNASVMVVTWNEN 82 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccccc---------ccchhhhhccCcceEEEEEeccc
Confidence 3456667899999999999999999999999976553222211 1111 12333446788888877766654
Q ss_pred eEEEEe--cCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcc
Q 003356 144 HMLLGL--SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (827)
Q Consensus 144 ~llv~t--~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (827)
.--.++ .+|-|.+ |---+.. |..+ .....+++.|.+|.|...+.
T Consensus 83 ~QKLTtSDt~GlIiV--Wmlykgs--------------------------W~EE------MiNnRnKSvV~SmsWn~dG~ 128 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIV--WMLYKGS--------------------------WCEE------MINNRNKSVVVSMSWNLDGT 128 (1189)
T ss_pred cccccccCCCceEEE--Eeeeccc--------------------------HHHH------HhhCcCccEEEEEEEcCCCc
Confidence 333333 3454444 4211110 0000 12245678899999999999
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCc------ceEEE
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS------LIRTV 295 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~------~~~~l 295 (827)
.++++..||.+++-+.+. .++|... +.+ .....+.|++|.+++..+-.+|.+.+||...+-. +....
T Consensus 129 kIcIvYeDGavIVGsvdG--NRIwgKe----Lkg-~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~ 201 (1189)
T KOG2041|consen 129 KICIVYEDGAVIVGSVDG--NRIWGKE----LKG-QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNG 201 (1189)
T ss_pred EEEEEEccCCEEEEeecc--ceecchh----cch-heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEee
Confidence 999999999988743332 3556532 222 1222488999999999999999999999764211 11111
Q ss_pred EeecCCCCCCCCCCeEEEEEC--------CCCCEEEEEEcCCcEEEEec
Q 003356 296 SLYDWGYSMDDTGPVSCIAWT--------PDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~s--------pDg~~Lasg~~Dg~v~vWs~ 336 (827)
.+ ...+....|..+.|. ||--+||++.++|.+.+..-
T Consensus 202 tg----~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 202 TG----IFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred ee----eecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 11 001112235555554 57789999999998877644
No 238
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=1.3e-05 Score=89.34 Aligned_cols=274 Identities=17% Similarity=0.151 Sum_probs=139.7
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCC--EEEEEEcCCcEEEEeccCC
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~--~Lasg~~Dg~v~vWs~~~~ 339 (827)
.+|+|..+-+........+.|+|++- ..++.+... ..+.+.-+.|-||++ .|...-.||.+.+|-....
T Consensus 236 faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpi--------er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 236 FAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPI--------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred hhcChhhhceEEEEeccceEEEcchh-hceeEEEEe--------ccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 68899888777777888899999876 666666666 577889999999887 7889999999999965431
Q ss_pred ----------------eeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecC-CcceEEEEec-
Q 003356 340 ----------------RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEG-SSERVLIFSF- 401 (827)
Q Consensus 340 ----------------~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~-~~~~v~~~~~- 401 (827)
.....++...+-.....+..|..+.....+.+.....+|...++++-..... ...-+.-|+|
T Consensus 307 ~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~ 386 (1062)
T KOG1912|consen 307 PTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFN 386 (1062)
T ss_pred CccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccccc
Confidence 1111111000000111111222211112334444677888776554322111 1112234444
Q ss_pred ce-------eeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeec-----cCCCcEEEEEEcCCCCEEEE
Q 003356 402 GK-------CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-----SQNWPVQHVAASKDGMFLAV 469 (827)
Q Consensus 402 ~~-------~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~-----~~~~~I~~va~SpdG~~lav 469 (827)
+. .+.+-+.||... ...... +.-..|+-.+ +.|.+.-. -..+|+
T Consensus 387 ~~~~~v~k~~l~~LS~dg~h~--------sGs~~~----------~~~p~p~~t~~~~~p~~n~~~~~------~pLvAv 442 (1062)
T KOG1912|consen 387 LSTKLVGKTSLISLSDDGSHS--------SGSTCV----------RMRPMPELTKVENDPGGNTPAGT------VPLVAV 442 (1062)
T ss_pred CceeehhhccccchhhcCCCC--------CCceee----------ecccCcccceeecCCCCCcccee------eeeEEe
Confidence 11 122222232100 000000 0000111100 11111111 147899
Q ss_pred EeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCE-EEEEEEeeCCC---cEEEEEeeCC---CCCccceEEEE-
Q 003356 470 AGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSN---TYELLFYPRY---HLDQSSLLCRK- 540 (827)
Q Consensus 470 ag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~-li~~~~~~~~~---~~~lrly~~~---~l~~~~~~~~~- 540 (827)
|...|++ ++|+.|+.-. ....-+.-.|+|+.|.++. ++..+|....+ .+-=++.-.+ -+...+-...+
T Consensus 443 GT~sGTV~vvdvst~~v~---~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~ 519 (1062)
T KOG1912|consen 443 GTNSGTVDVVDVSTNAVA---ASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKP 519 (1062)
T ss_pred ecCCceEEEEEecchhhh---hhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCC
Confidence 9999999 9999987521 1112233458899999875 44445543222 2211222221 12221111111
Q ss_pred -ecCCccEEEEccCCEEEEEEcCceEEEEEEE
Q 003356 541 -SLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (827)
Q Consensus 541 -~l~~~~~~l~~~~~~llV~~~~~~i~l~~~~ 571 (827)
+-|-..+-.+..+.++++.+-+.-+.+|++.
T Consensus 520 despI~~irvS~~~~yLai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 520 DESPIRAIRVSSSGRYLAILFRREPLEIWDLK 551 (1062)
T ss_pred CcCcceeeeecccCceEEEEecccchHHHhhc
Confidence 1111234456788899998888888888874
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.66 E-value=0.00012 Score=80.03 Aligned_cols=271 Identities=12% Similarity=0.132 Sum_probs=136.6
Q ss_pred eEEEEEecceEEEEEcc-----CeEEEeecCCce-eEEEEEEeChHhhhhcCcc-cEEEEcCCccEEEEEe-cCcEEEEE
Q 003356 23 QIIYFKVNNGLLLIASP-----CHIELWSSSQHK-VRLGKYKRDSESVQREGEN-LQAVWSPDTKLIAVVT-SSLYLHIF 94 (827)
Q Consensus 23 ~vv~fspdg~lla~~~~-----~~v~IW~~~~~~-~~l~~~~r~~~s~~~~G~~-~~v~wSPDg~~lav~t-~dg~l~l~ 94 (827)
.-++++|++++|-++.+ +.|..|.++ +. ..+....+... .|.. ..++.+||+++|+++. .+|.+.+|
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~-~~~g~L~~~~~~~~----~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRID-PDTGTLTLLNSVPS----GGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEE-TTTTEEEEEEEEEE----SSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEEC-CCcceeEEeeeecc----CCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 33789999987766633 488888885 33 33333333211 2333 4699999999999987 58899999
Q ss_pred EEEecCceeecCCCCCCCceeeeEeeEeeccccc--ccccceEEEeecCCCeEEEEe-cCCcEEEEecCCccCcceeecc
Q 003356 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPF--AEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVH 171 (827)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~v~~~~~d~~~llv~t-~dg~i~~~~w~~~~~~~~~l~~ 171 (827)
++......... ...+........+. ......-..+.++++.+++.. ....|.++.++.....-..
T Consensus 115 ~l~~~g~l~~~---------~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~--- 182 (345)
T PF10282_consen 115 PLDDDGSLGEV---------VQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP--- 182 (345)
T ss_dssp EECTTSEEEEE---------EEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE---
T ss_pred EccCCccccee---------eeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE---
Confidence 99753211000 00000000000000 011111235577888887764 3457888888755421100
Q ss_pred cCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEe-CCcEEEEeec--cCccccceee
Q 003356 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVS--KKGLKLAEFI 248 (827)
Q Consensus 172 ~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~--~~~~~~~~~~ 248 (827)
.. .........-..|.+++....+.+... ++.+.+.... ++..+..+..
T Consensus 183 -------~~---------------------~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 183 -------VD---------------------SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp -------EE---------------------EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred -------ee---------------------ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence 00 001122334555554444332222222 1222222222 1111111111
Q ss_pred cc--ceecCCCCcEEEEEcCCCCEEEEEec-CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEE
Q 003356 249 KI--DKELGSGDAVCASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (827)
Q Consensus 249 ~~--~~~~~h~~~v~va~sp~~~lla~g~~-dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg 325 (827)
.. ....+...+-.++++|||++|.+... +++|.+|+++...+.+..+....- ....-+.++++|||++|+++
T Consensus 235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-----~G~~Pr~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-----GGKFPRHFAFSPDGRYLYVA 309 (345)
T ss_dssp ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-----SSSSEEEEEE-TTSSEEEEE
T ss_pred eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-----CCCCccEEEEeCCCCEEEEE
Confidence 10 00111123334999999998887664 579999999542333333222110 12236899999999999888
Q ss_pred E-cCCcEEEEec--cCCeeEE
Q 003356 326 W-KSRGLTVWSV--SGCRLMS 343 (827)
Q Consensus 326 ~-~Dg~v~vWs~--~~~~l~~ 343 (827)
. .++.|.+|++ .+|.+..
T Consensus 310 ~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 310 NQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp ETTTTEEEEEEEETTTTEEEE
T ss_pred ecCCCeEEEEEEeCCCCcEEE
Confidence 7 5578999977 4666543
No 240
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.66 E-value=1.2e-06 Score=88.99 Aligned_cols=257 Identities=11% Similarity=0.061 Sum_probs=137.1
Q ss_pred CcccEEEEcCCccEEEEEecCcEEEEEEEEecCce---ee--cCCCCCCCceeeeEeeEeecccccccccceEEEeec-C
Q 003356 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS---IQ--IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-D 141 (827)
Q Consensus 68 G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~---~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-d 141 (827)
.-+.++.|..+|.+||+|..+|.|.+|.-+..... ++ ...|.++--.+.+++. +++ ...|.-+.. .
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSlei--eEK------inkIrw~~~~n 97 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEI--EEK------INKIRWLDDGN 97 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhh--hhh------hhhceecCCCC
Confidence 44568999999999999999999999986543321 11 1233343333443322 222 223322222 2
Q ss_pred CCeEEEEecCCcEEEEecCCccCcc--eeec--ccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEc
Q 003356 142 NKHMLLGLSDGSLYSISWKGEFYGA--FELV--HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (827)
Q Consensus 142 ~~~llv~t~dg~i~~~~w~~~~~~~--~~l~--~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 217 (827)
...+++.+.|.+++.|......... ..+. ..|...+.++. |.-...++... ....+..-..+.-.|.+|
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~-p~~~~~~~~ve---a~prRv~aNaHtyhiNSI--- 170 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL-PVEGRHDLEVE---ASPRRVYANAHTYHINSI--- 170 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeec-eeeccccceee---eeeeeeccccceeEeeee---
Confidence 3678889999999986543221111 0000 00111111111 00000000000 001111112333344444
Q ss_pred CCcceEEEEEeCCcEEEEeeccCccccceeeccce-e-----cC-----CCCcEE-EEEcCC-CCEEEEEecCCeEEEEE
Q 003356 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-E-----LG-----SGDAVC-ASIAPE-QQILAVGTRRGVVELYD 284 (827)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~-~-----~~-----h~~~v~-va~sp~-~~lla~g~~dg~v~vw~ 284 (827)
.+.+|+..+++ ++|-.+.+|+..-..+ + +. -...++ ..|+|. -.+++-.+..|+|++-|
T Consensus 171 -------S~NsD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 171 -------SVNSDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred -------eecCccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 47889988874 5677788998753221 1 11 123344 789986 45777788899999999
Q ss_pred cCCCCcc---eEEEEeecCCCC----CCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec-cCCeeEEEeccc
Q 003356 285 LAESASL---IRTVSLYDWGYS----MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV-SGCRLMSTIRQI 348 (827)
Q Consensus 285 ~~~~~~~---~~~l~~~~~~~~----~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~-~~~~l~~tl~~~ 348 (827)
++...-+ .+.+....-+.+ .+-...|..+.||++|+++++-.. -+|++||+ ...+.+.+..-|
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 9852111 111221111111 012446889999999999998766 79999999 445555555444
No 241
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.63 E-value=0.00012 Score=75.82 Aligned_cols=209 Identities=17% Similarity=0.253 Sum_probs=116.1
Q ss_pred E-EEEcCCCCEEEEEecC-CeEEEEEcCCCCcceEEEEeecCCCCCCCCCC----------eEEEEECCCCCEEEEEEc-
Q 003356 261 C-ASIAPEQQILAVGTRR-GVVELYDLAESASLIRTVSLYDWGYSMDDTGP----------VSCIAWTPDNSAFAVGWK- 327 (827)
Q Consensus 261 ~-va~sp~~~lla~g~~d-g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~----------V~~l~~spDg~~Lasg~~- 327 (827)
| ++++++|++++++... |.|.++-+++.+.+.......+ |+++ +.+..++|||++|++..-
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~------h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG 165 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK------HTGSGPHERQESPHVHSANFTPDGRYLVVPDLG 165 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee------cCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence 5 9999999999998765 7999999977454433322211 5555 899999999999998753
Q ss_pred CCcEEEEeccCCeeEEEeccc--cccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceee
Q 003356 328 SRGLTVWSVSGCRLMSTIRQI--SLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCC 405 (827)
Q Consensus 328 Dg~v~vWs~~~~~l~~tl~~~--~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~ 405 (827)
--.|.++++..|++...-... ....-..+.|+|++ + - .....+-.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~----k----------------~-aY~v~EL~------------ 212 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNG----K----------------Y-AYLVNELN------------ 212 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCC----c----------------E-EEEEeccC------------
Confidence 126889998877653221100 00122344455544 1 1 11111111
Q ss_pred eecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCc-eE-EEEc--C
Q 003356 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG-LI-LYDI--R 481 (827)
Q Consensus 406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg-~i-iwd~--~ 481 (827)
+++.+|.......++ .....+..+|..|.+.+| .-.+.+|+||++|.++.+.- .| +|.+ .
T Consensus 213 ------stV~v~~y~~~~g~~---------~~lQ~i~tlP~dF~g~~~-~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 213 ------STVDVLEYNPAVGKF---------EELQTIDTLPEDFTGTNW-AAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred ------CEEEEEEEcCCCceE---------EEeeeeccCccccCCCCc-eeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 112222111110000 000111124777777665 56789999999999876532 23 5544 4
Q ss_pred CCeEEeeCCccceEEEEEEEE--EEeCCEEEEEEEeeCCCcEEEEEeeCC
Q 003356 482 QKKWRVFGDITQEQKIQSKGL--LWLGKIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 482 t~~w~~f~~~~~e~~~~v~gl--~W~~~~li~~~~~~~~~~~~lrly~~~ 529 (827)
+|+..+++...-|.. .-+++ .-.+++|+++ .+ ++..+.+|.++
T Consensus 277 ~g~L~~~~~~~teg~-~PR~F~i~~~g~~Liaa--~q--~sd~i~vf~~d 321 (346)
T COG2706 277 GGKLELVGITPTEGQ-FPRDFNINPSGRFLIAA--NQ--KSDNITVFERD 321 (346)
T ss_pred CCEEEEEEEeccCCc-CCccceeCCCCCEEEEE--cc--CCCcEEEEEEc
Confidence 566554432222211 12333 3357788887 33 33459999996
No 242
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=4.3e-07 Score=97.17 Aligned_cols=220 Identities=15% Similarity=0.180 Sum_probs=127.0
Q ss_pred eecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC--CCCEEEEEEcC
Q 003356 252 KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKS 328 (827)
Q Consensus 252 ~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--Dg~~Lasg~~D 328 (827)
.+.||++.|. ++||.+|.+||+|+.|-.+.|||... -+.++.+.. +|++.|.|++|-| ..+.+++|..|
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-~KllhsI~T-------gHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-YKLLHSIST-------GHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchh-cceeeeeec-------ccccceeEEeeeccCCCeEEEeccCc
Confidence 3479999997 99999999999999999999999886 666666654 5999999999999 56789999999
Q ss_pred CcEEEEeccCCee----------EEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEec-----
Q 003356 329 RGLTVWSVSGCRL----------MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE----- 390 (827)
Q Consensus 329 g~v~vWs~~~~~l----------~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~----- 390 (827)
..|+++|+...+. ......| .+.|.-++..|+++ ..+-+++ +++.+|....+.-.-..
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~ch-t~rVKria~~p~~P---htfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCH-TDRVKRIATAPNGP---HTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhh-hhhhhheecCCCCC---ceEEEecCCcceeeecccCCccCCccccccHH
Confidence 9999999964210 1111112 44555555555542 1222222 45555543211100000
Q ss_pred --C-Ccce--E--EEEec--ceeeeecccCCCeeeeEEEE-----cCCeEEEEec-CCCCcce-E--EEeeeceeeccCC
Q 003356 391 --G-SSER--V--LIFSF--GKCCLNRGVSGMTYARQVIY-----GEDRLLVVQS-EDTDELK-I--LHLNLPVSYISQN 452 (827)
Q Consensus 391 --~-~~~~--v--~~~~~--~~~~~s~~~d~~~~~w~~~~-----~~~~~~~~~~-~d~~~~~-w--~~~~~p~~~~~~~ 452 (827)
. +... . ..+++ ...++.|+.|.-.+++|... .+++.+..++ .+..... . .+++.++... ..
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~-~~ 271 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNL-DR 271 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccc-cc
Confidence 0 0111 1 33444 45677777777777766311 1111111111 0000000 0 1111111111 11
Q ss_pred Cc--EEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 453 WP--VQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 453 ~~--I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
.. ++.++|+|+|.-|.+.=.--.+ ++|+..++
T Consensus 272 ~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 272 YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 12 6789999999877766544556 89987665
No 243
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=2.5e-06 Score=96.70 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=90.4
Q ss_pred eEEEEEeCCcEEEEeec---cCccccceeeccce--ecCCCCcEE-EEEcCCCCEEE-EEecCCe--EEEEEcCCCCcce
Q 003356 222 LLFVLYSNGQLMSCSVS---KKGLKLAEFIKIDK--ELGSGDAVC-ASIAPEQQILA-VGTRRGV--VELYDLAESASLI 292 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~---~~~~~~~~~~~~~~--~~~h~~~v~-va~sp~~~lla-~g~~dg~--v~vw~~~~~~~~~ 292 (827)
....++|||+.++..+. +..+.+|+...++. +..+...+. .+|||||+.|+ +.+.+|. |.+||+.+ + ..
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~-~-~~ 282 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS-G-TT 282 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC-C-ce
Confidence 34557788876665543 23566777665433 233444444 89999999876 4555665 56667655 3 33
Q ss_pred EEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC-C--cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce
Q 003356 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (827)
Q Consensus 293 ~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D-g--~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l 369 (827)
+.+.. +.+.....+|+|||+.|+..+.. | .|.+|++.++... .+..+ ...+..+.|+|++ +.+
T Consensus 283 ~~Lt~--------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~~~~~~~SpdG----~~i 348 (435)
T PRK05137 283 TRLTD--------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGRYSTPVWSPRG----DLI 348 (435)
T ss_pred EEccC--------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCcccCeEECCCC----CEE
Confidence 44443 55667789999999988877643 3 5788888776543 33222 2345678899998 544
Q ss_pred eec------ceeEEEccCCce
Q 003356 370 MSG------TSMMQWDEYGYR 384 (827)
Q Consensus 370 ~sg------~~i~~W~~~~~~ 384 (827)
+.. ..+..|+..++.
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc
Confidence 321 145666665443
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.1e-06 Score=95.76 Aligned_cols=209 Identities=15% Similarity=0.129 Sum_probs=123.0
Q ss_pred cCCccEEEEEecCcEEEEEEEEecCceeecC-CCCCCCce---eeeEeeEeecccccccccceEEEeecCCCeEEEEecC
Q 003356 76 SPDTKLIAVVTSSLYLHIFKVQITEKSIQIG-GKQPSGLF---FIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD 151 (827)
Q Consensus 76 SPDg~~lav~t~dg~l~l~~v~~~~~~~~~~-~~~~~~~~---~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~d 151 (827)
.|-..++|..++||+|++|+...+..++-+. ....++-+ .|.+ ..+....-.-+-..+...+.|-..++.|+..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L--~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGL--SADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEE--EeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 4667899999999999999998766433221 11112211 2332 2222100000000111223445678889999
Q ss_pred CcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCc
Q 003356 152 GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ 231 (827)
Q Consensus 152 g~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~ 231 (827)
|.|..++..+...... .....+.+.+.++.+......+-.+..|++
T Consensus 80 g~v~~ys~~~g~it~~----------------------------------~st~~h~~~v~~~~~~~~~~ciyS~~ad~~ 125 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAK----------------------------------LSTDKHYGNVNEILDAQRLGCIYSVGADLK 125 (541)
T ss_pred ccEEEEEecCCeEEEE----------------------------------EecCCCCCcceeeecccccCceEecCCcee
Confidence 9998887654322111 001123344555544444444444455555
Q ss_pred EEEEeeccCc-cccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCe
Q 003356 232 LMSCSVSKKG-LKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV 310 (827)
Q Consensus 232 ~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V 310 (827)
+..+...+.. ++.|.... .....+.++|||..+++|+ ++|++||+.+ .+.+.++.+ |.++|
T Consensus 126 v~~~~~~~~~~~~~~~~~~-------~~~~sl~is~D~~~l~~as--~~ik~~~~~~-kevv~~ftg--------h~s~v 187 (541)
T KOG4547|consen 126 VVYILEKEKVIIRIWKEQK-------PLVSSLCISPDGKILLTAS--RQIKVLDIET-KEVVITFTG--------HGSPV 187 (541)
T ss_pred EEEEecccceeeeeeccCC-------CccceEEEcCCCCEEEecc--ceEEEEEccC-ceEEEEecC--------CCcce
Confidence 5443333222 12333221 2223388999999999877 6799999999 899999999 99999
Q ss_pred EEEEECCC-----CC-EEEEEEcCCcEEEEeccC
Q 003356 311 SCIAWTPD-----NS-AFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 311 ~~l~~spD-----g~-~Lasg~~Dg~v~vWs~~~ 338 (827)
++++|..+ |. +|.+...+..+.+|-+..
T Consensus 188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 188 RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999987 55 455556677888887754
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=5e-06 Score=94.19 Aligned_cols=86 Identities=17% Similarity=0.292 Sum_probs=49.9
Q ss_pred EEEcCCCCEEEEEec-CCeEEE--EEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCc---EEEEe
Q 003356 262 ASIAPEQQILAVGTR-RGVVEL--YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWS 335 (827)
Q Consensus 262 va~sp~~~lla~g~~-dg~v~v--w~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~---v~vWs 335 (827)
.+|+|||+.|+..+. ++..++ +|+++ +. ...+.. . ......+|+|||+.|+....+++ +.+++
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~--------~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~ 423 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTS--------T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVS 423 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccC--------C-CCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 689999999988765 344444 55554 32 333322 1 11223479999998877665443 66777
Q ss_pred ccCCeeEEEeccccccceeeeeecC
Q 003356 336 VSGCRLMSTIRQISLSSISSPIVKP 360 (827)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp 360 (827)
..|+ ....+..+ ...+..++|+|
T Consensus 424 ~~G~-~~~~l~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 424 IDGR-FKARLPAG-QGEVKSPAWSP 446 (448)
T ss_pred CCCC-ceEECcCC-CCCcCCCccCC
Confidence 7554 34444332 23455666665
No 246
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=4.7e-07 Score=95.83 Aligned_cols=154 Identities=14% Similarity=0.219 Sum_probs=108.7
Q ss_pred EEEcCCCC-EEEEEecCCeEEEEEcCCCCcc-----eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 003356 262 ASIAPEQQ-ILAVGTRRGVVELYDLAESASL-----IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (827)
Q Consensus 262 va~sp~~~-lla~g~~dg~v~vw~~~~~~~~-----~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs 335 (827)
++++|... .+|+|+.|.-+++||.....+. +..+-.... .. ...-.|++++|+.+|.-|.+++.|-.|.+++
T Consensus 287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl-~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL-VE-DDPVNITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc-cc-cCcccceeEEecCCccceeeeecccceEEec
Confidence 88999776 8999999999999997652111 111111000 01 2344599999999999888899999999995
Q ss_pred cc--CC----------eeEEE-ecccccc-ceeeee-ecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEE
Q 003356 336 VS--GC----------RLMST-IRQISLS-SISSPI-VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL 397 (827)
Q Consensus 336 ~~--~~----------~l~~t-l~~~~~~-~v~s~~-~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~ 397 (827)
-. .| ..+.. .++|-++ .|..+- |-|.. +++++|+ .|.+|+-.++++++.+++...-|.
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs----EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVN 440 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS----EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVN 440 (559)
T ss_pred cccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc----ceEEecCccceEEEEecchhHHHHHhhcccceEe
Confidence 42 12 12222 5566322 344443 34555 8899998 899999999999999888776667
Q ss_pred EEec---ceeeeecccCCCeeeeEEEE
Q 003356 398 IFSF---GKCCLNRGVSGMTYARQVIY 421 (827)
Q Consensus 398 ~~~~---~~~~~s~~~d~~~~~w~~~~ 421 (827)
++.+ ...+++.+.|..+++|.-+.
T Consensus 441 CLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 441 CLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred ccCCCCCCchhhccCCccceeeecCCc
Confidence 8877 56788999999999998543
No 247
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.53 E-value=0.0008 Score=73.69 Aligned_cols=269 Identities=12% Similarity=0.080 Sum_probs=137.3
Q ss_pred CeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEec----CcEEEEEEEEecCceeecCCCCCCCcee
Q 003356 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----SLYLHIFKVQITEKSIQIGGKQPSGLFF 115 (827)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~----dg~l~l~~v~~~~~~~~~~~~~~~~~~~ 115 (827)
+.|.+|.++.....+..... +..-+.-.-++++|++++|++... +|.|..|++......+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~----~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L------------ 76 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQT----VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL------------ 76 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEE----EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE------------
T ss_pred CcEEEEEEcCCCCCceEeee----ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee------------
Confidence 57888887322223332221 111122345999999999999987 4799999997542111
Q ss_pred eeEeeEeecccccccccceEEEeecCCCeEEEEec-CCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccc
Q 003356 116 IKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (827)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~-dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~ 194 (827)
..-......+....-.++.++++.++++.. +|.+.++..+.......... .+......++
T Consensus 77 -----~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~-------~~~~~g~g~~------- 137 (345)
T PF10282_consen 77 -----TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ-------TVRHEGSGPN------- 137 (345)
T ss_dssp -----EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE-------EEESEEEESS-------
T ss_pred -----EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee-------ecccCCCCCc-------
Confidence 011111112333344466778899999874 78888887765411111000 0000000000
Q ss_pred cCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeec-cCccccceeeccc---------eecCCCCcEEEEE
Q 003356 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKID---------KELGSGDAVCASI 264 (827)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-~~~~~~~~~~~~~---------~~~~h~~~v~va~ 264 (827)
........... +.++|||+.+++.-. ...+.+++..... ....-..+-.++|
T Consensus 138 --------~~rq~~~h~H~----------v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 138 --------PDRQEGPHPHQ----------VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp --------TTTTSSTCEEE----------EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred --------cccccccccee----------EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 00112233434 346777775554322 2234444433221 1122234555999
Q ss_pred cCCCCEEEEE-ecCCeEEEEEcCCCCcceEEEEe-ecCCCCCCCCCCeEEEEECCCCCEEEEEE-cCCcEEEEecc--CC
Q 003356 265 APEQQILAVG-TRRGVVELYDLAESASLIRTVSL-YDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVS--GC 339 (827)
Q Consensus 265 sp~~~lla~g-~~dg~v~vw~~~~~~~~~~~l~~-~~~~~~~~h~~~V~~l~~spDg~~Lasg~-~Dg~v~vWs~~--~~ 339 (827)
+|+++++.+. ..+++|.+|++......+..++. ...+...........|++||||++|.++. .++.|.++++. ++
T Consensus 200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g 279 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG 279 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT
T ss_pred cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC
Confidence 9999987655 45789999999831222222221 11111111223578899999999887765 45689999993 33
Q ss_pred ee--EEEeccccccceeeeeecCCC
Q 003356 340 RL--MSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 340 ~l--~~tl~~~~~~~v~s~~~sp~~ 362 (827)
++ +..+... -..-..++++|++
T Consensus 280 ~l~~~~~~~~~-G~~Pr~~~~s~~g 303 (345)
T PF10282_consen 280 TLTLVQTVPTG-GKFPRHFAFSPDG 303 (345)
T ss_dssp TEEEEEEEEES-SSSEEEEEE-TTS
T ss_pred ceEEEEEEeCC-CCCccEEEEeCCC
Confidence 33 2222211 1224667778877
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.53 E-value=1.1e-05 Score=82.11 Aligned_cols=285 Identities=13% Similarity=0.143 Sum_probs=155.1
Q ss_pred eEEEEEecceEEEEE-ccCeEEEeecCCcee----EEEEE------EeChHhhhhcCcccEEEEcCCcc--EEEEEecCc
Q 003356 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKV----RLGKY------KRDSESVQREGENLQAVWSPDTK--LIAVVTSSL 89 (827)
Q Consensus 23 ~vv~fspdg~lla~~-~~~~v~IW~~~~~~~----~l~~~------~r~~~s~~~~G~~~~v~wSPDg~--~lav~t~dg 89 (827)
..|-|..+|.+||++ .+++|.++.-.+... ....+ -.-.+|++-...+..+.|-+++. .+.+.|.|.
T Consensus 29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdk 108 (433)
T KOG1354|consen 29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDK 108 (433)
T ss_pred eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCc
Confidence 557899999999999 467888876532221 01111 01123444445567889998886 577888999
Q ss_pred EEEEEEEEecCcee---ecCCCCC----CCceeeeE-------eeEeecccccccccceEEEeecCCC-eEEEEecCCcE
Q 003356 90 YLHIFKVQITEKSI---QIGGKQP----SGLFFIKI-------SLVLNEQLPFAEKGLSVSNIVSDNK-HMLLGLSDGSL 154 (827)
Q Consensus 90 ~l~l~~v~~~~~~~---~~~~~~~----~~~~~~~~-------~l~~~~~~~~~~~~~~v~~~~~d~~-~llv~t~dg~i 154 (827)
++++|.+....... ......+ ..+.++.+ +..++ ++.-..+.-.+-+++.+.+ .-++..+|=.|
T Consensus 109 tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~pr-Rv~aNaHtyhiNSIS~NsD~Et~lSADdLRI 187 (433)
T KOG1354|consen 109 TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPR-RVYANAHTYHINSISVNSDKETFLSADDLRI 187 (433)
T ss_pred ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeee-eeccccceeEeeeeeecCccceEeeccceee
Confidence 99999996433211 0000000 01111111 11111 1112344445555554442 34444455455
Q ss_pred EEEecCCcc-Ccceeec-ccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCc-ceEEEEEeCCc
Q 003356 155 YSISWKGEF-YGAFELV-HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQ 231 (827)
Q Consensus 155 ~~~~w~~~~-~~~~~l~-~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~~~~s~dG~ 231 (827)
.+ |..+. .+.+.+. .+|+.-.-+ ..-|++-+|+|.. +.++.-++.|.
T Consensus 188 NL--Wnlei~d~sFnIVDIKP~nmEeL----------------------------teVITsaEFhp~~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 188 NL--WNLEIIDQSFNIVDIKPANMEEL----------------------------TEVITSAEFHPHHCNVFVYSSSKGT 237 (433)
T ss_pred ee--ccccccCCceeEEEccccCHHHH----------------------------HHHHhhhccCHhHccEEEEecCCCc
Confidence 54 66553 3333321 222221111 1235666788877 45555555666
Q ss_pred EEEEeec-----cCccccceee-cccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCC
Q 003356 232 LMSCSVS-----KKGLKLAEFI-KIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (827)
Q Consensus 232 ~~~~~~~-----~~~~~~~~~~-~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~ 301 (827)
+-++... |..-++.... ++... .+.-..+. +.|++.|+++.+-.. -+|++||+....+++.+.+.++.-
T Consensus 238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~l 316 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYL 316 (433)
T ss_pred EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhH
Confidence 6554433 2222222111 11111 11223456 899999999986433 589999997657777776663311
Q ss_pred -------CCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC
Q 003356 302 -------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 302 -------~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~ 339 (827)
|.....-.-..|+||-++.++++|+..+.+++++...|
T Consensus 317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 317 RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 11111222356899999999999999999999996544
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=8.8e-06 Score=88.03 Aligned_cols=237 Identities=20% Similarity=0.195 Sum_probs=149.2
Q ss_pred CCCCcEE-EEEcCCCCE-EEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEE
Q 003356 255 GSGDAVC-ASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 255 ~h~~~v~-va~sp~~~l-la~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
++..+.+ +.++|||++ +|+|..--.|++||+.. ..+...-.. ....|...-.|-|-.-++--..|.+|-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan-LSLKFERhl--------Dae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN-LSLKFERHL--------DAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccc-ceeeeeecc--------cccceeEEEeccchhhheEeecCceee
Confidence 4555555 999999995 67888888999999976 333222112 345677777777777777777888888
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCcccee--ecceeEEEccCCceEEEEecCCcceEEEEec---ceeeee
Q 003356 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM--SGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLN 407 (827)
Q Consensus 333 vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~--sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s 407 (827)
+-...|..--..+.-.+. .+.++.-. | ..+. +|..+.-.+.+.|+.+..+.-..+.+++++. ...++.
T Consensus 120 fHak~G~hy~~RIP~~GR----Dm~y~~~s-c--Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~ 192 (703)
T KOG2321|consen 120 FHAKYGRHYRTRIPKFGR----DMKYHKPS-C--DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLAC 192 (703)
T ss_pred ehhhcCeeeeeecCcCCc----cccccCCC-c--cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEe
Confidence 877666432222221111 12221110 1 3333 3336666788888877766655566666655 456677
Q ss_pred cccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccC-----CCcEEEEEEcCCCCEEEEEeCCceE-EEEcC
Q 003356 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ-----NWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (827)
Q Consensus 408 ~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~-----~~~I~~va~SpdG~~lavag~dg~i-iwd~~ 481 (827)
|+.+|.+..||-...+.- ..+.++....+| .-.|+++.|+.||-.+++|..+|.+ +||+.
T Consensus 193 Gt~~g~VEfwDpR~ksrv--------------~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRV--------------GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred cccCceEEEecchhhhhh--------------eeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence 778999999996543321 011112221112 2249999999999999999999999 99999
Q ss_pred CCeEEeeCCccceEEEEEEEEEEe----CCEEEEEEEeeCCCcEEEEEeeCC
Q 003356 482 QKKWRVFGDITQEQKIQSKGLLWL----GKIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 482 t~~w~~f~~~~~e~~~~v~gl~W~----~~~li~~~~~~~~~~~~lrly~~~ 529 (827)
+.+=.+..+ |...+.+..+.|. ++.++++ +..-+++|...
T Consensus 259 a~~pl~~kd--h~~e~pi~~l~~~~~~~q~~v~S~------Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 259 ASKPLLVKD--HGYELPIKKLDWQDTDQQNKVVSM------DKRILKIWDEC 302 (703)
T ss_pred cCCceeecc--cCCccceeeecccccCCCceEEec------chHHhhhcccc
Confidence 987443333 3345567788895 3345544 33567888775
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.50 E-value=2e-06 Score=99.23 Aligned_cols=193 Identities=12% Similarity=0.074 Sum_probs=133.8
Q ss_pred EEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCC
Q 003356 73 AVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG 152 (827)
Q Consensus 73 v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg 152 (827)
..+.-+.+.+|+++.++.+.+|+..-+....... ..+.+ .+. ...+...+.+.-+++.|+.-|
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~---~~er~------------~l~--~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ---SDERC------------TLY--SSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcC---CCceE------------EEE--eEEEEeccCcEEEEEeccccc
Confidence 3345567788999999999999875333111110 00000 000 011122233445677788888
Q ss_pred cEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcE
Q 003356 153 SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL 232 (827)
Q Consensus 153 ~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~ 232 (827)
.+..|.|.... .+ .....+.+.|.++. .+.||++
T Consensus 156 ~iivW~~~~dn-~p-----------------------------------~~l~GHeG~iF~i~----------~s~dg~~ 189 (967)
T KOG0974|consen 156 EIIVWKPHEDN-KP-----------------------------------IRLKGHEGSIFSIV----------TSLDGRY 189 (967)
T ss_pred cEEEEeccccC-Cc-----------------------------------ceecccCCceEEEE----------EccCCcE
Confidence 88877665221 11 11345667777766 7889999
Q ss_pred EEEeeccCccccceeecccee----cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCC
Q 003356 233 MSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (827)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~ 307 (827)
+++.++|.++++|...+.+.. -+|...+. +.|.|. .+++++.|.+.++|+.+. ..+..+.. |.
T Consensus 190 i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~--~~l~~y~~--------h~ 257 (967)
T KOG0974|consen 190 IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG--TQLEVYDE--------HS 257 (967)
T ss_pred EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc--ceehhhhh--------hh
Confidence 999999999999999877654 47888888 889888 999999999999997654 33335555 54
Q ss_pred -CCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 003356 308 -GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 308 -~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~ 340 (827)
+.+..++..++.-.+.+++.|+++++|+..+..
T Consensus 258 g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 258 GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred hcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 468999999999999999999999999987643
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.50 E-value=2.1e-06 Score=98.99 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=89.8
Q ss_pred eecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceE-EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC
Q 003356 252 KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (827)
Q Consensus 252 ~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~-~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg 329 (827)
.+.||++.+- +.++-||+++|+.+.|.++|+|++++ .+... +.-+ |++.|+.+.|.|. .++++++|.
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s-~~~~~~~~fg--------HsaRvw~~~~~~n--~i~t~gedc 238 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS-REVLGCTGFG--------HSARVWACCFLPN--RIITVGEDC 238 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeeccc-ccccCccccc--------ccceeEEEEeccc--eeEEeccce
Confidence 3589998887 99999999999999999999999998 54443 3333 9999999999999 999999999
Q ss_pred cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEcc
Q 003356 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (827)
Q Consensus 330 ~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~ 380 (827)
+.++|+..+.++. .+.+|--..+..++..++. ....++. .++.|+.
T Consensus 239 tcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~----~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 239 TCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGV----IIKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEEEEecccceeh-hhhhhhhcceeEEEEcCCc----eEEEeeccCcchhhhhh
Confidence 9999988776544 7777755678888877765 4444443 5666654
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=1.7e-05 Score=89.18 Aligned_cols=126 Identities=10% Similarity=0.014 Sum_probs=74.5
Q ss_pred EEEEeCCcEEEEeec-cCccccceeec------cceecCCCCcEE-EEEcCCCCEEEEEecC---CeEEEEEcCCCCcce
Q 003356 224 FVLYSNGQLMSCSVS-KKGLKLAEFIK------IDKELGSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLI 292 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~-~~~~~~~~~~~------~~~~~~h~~~v~-va~sp~~~lla~g~~d---g~v~vw~~~~~~~~~ 292 (827)
..++|||+.++..++ ++..++|.... .+.+..+..... .+|||||+.||..+.+ ..|.+||+.+ ++.
T Consensus 286 p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~- 363 (428)
T PRK01029 286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD- 363 (428)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-
Confidence 346788876665553 44444553221 112223333333 8999999999877653 3689999876 433
Q ss_pred EEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc---CCcEEEEeccCCeeEEEeccccccceeeeeecCC
Q 003356 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (827)
Q Consensus 293 ~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~---Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (827)
+.+.. ..+.+....|+|||+.|+.... +..+.+|++.+++...-... ...+..++|+|.
T Consensus 364 ~~Lt~--------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~--~g~~~~p~Ws~~ 425 (428)
T PRK01029 364 YQLTT--------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG--SGEKRFPSWGAF 425 (428)
T ss_pred EEccC--------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCcccCceecCC
Confidence 33332 2345677999999998875443 24688888887764332222 223455666654
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=0.00089 Score=69.57 Aligned_cols=251 Identities=11% Similarity=0.104 Sum_probs=136.8
Q ss_pred EEEEEc---cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecC---cEEEEEEEEecCceeecC
Q 003356 33 LLLIAS---PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIG 106 (827)
Q Consensus 33 lla~~~---~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~d---g~l~l~~v~~~~~~~~~~ 106 (827)
++.+-+ ...|.+|+++.....+... +-+.+-+..+-++|+|+++.|+++-.+ |.+.-|+++..+..+.
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g~l~~~----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-- 79 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTGELSLL----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-- 79 (346)
T ss_pred EEeeecccCCCceEEEEEeCcccccchh----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--
Confidence 445555 6689999987333222222 223455777889999999999998755 7888899875432211
Q ss_pred CCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec-CCcEEEEecCCccCcceeecccCCCCcccceeccc
Q 003356 107 GKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (827)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~-dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s 185 (827)
+.......+....-.++..++..++++.. .|.|.++....+-.... .+..+.+.
T Consensus 80 ---------------~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~----------~v~~~~h~ 134 (346)
T COG2706 80 ---------------FLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP----------VVQVVKHT 134 (346)
T ss_pred ---------------EeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccc----------ceeeeecC
Confidence 11112223332233466677778888875 46676665543211000 00000000
Q ss_pred CCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeec-cCccccceeecccee-------cCCC
Q 003356 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE-------LGSG 257 (827)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-~~~~~~~~~~~~~~~-------~~h~ 257 (827)
... -.-......+ ..+-++|||+++++... ...+.+++...++.. +.-.
T Consensus 135 g~~-------------p~~rQ~~~h~----------H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~ 191 (346)
T COG2706 135 GSG-------------PHERQESPHV----------HSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA 191 (346)
T ss_pred CCC-------------CCccccCCcc----------ceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence 000 0000001111 23447788877665432 223444554433211 2223
Q ss_pred CcEEEEEcCCCCEEEEEe-cCCeEEEEEcCCCCcceEEEEeec-CCCCCCCCCCeEEEEECCCCCEEEEEEc-CCcEEEE
Q 003356 258 DAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVW 334 (827)
Q Consensus 258 ~~v~va~sp~~~lla~g~-~dg~v~vw~~~~~~~~~~~l~~~~-~~~~~~h~~~V~~l~~spDg~~Lasg~~-Dg~v~vW 334 (827)
++-.++|+|++++.-+-+ -+++|.+|..+...+....++... .+....-......|..+|||++|-++.+ ...|.++
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 445599999999877655 489999999987434343333211 1111113445678999999999988754 2367777
Q ss_pred ecc
Q 003356 335 SVS 337 (827)
Q Consensus 335 s~~ 337 (827)
.+.
T Consensus 272 ~V~ 274 (346)
T COG2706 272 SVD 274 (346)
T ss_pred EEc
Confidence 663
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.48 E-value=1.8e-05 Score=89.34 Aligned_cols=116 Identities=21% Similarity=0.209 Sum_probs=74.3
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecC---CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEE-EEcC
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKS 328 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~d---g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Las-g~~D 328 (827)
..+...+. .+|+|||+.||.++.+ ..|.+|++.+ ++.. .+.. +.+.+.+++|+|||+.|+. .+.+
T Consensus 186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-g~~~-~~~~--------~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-GQRE-KVAS--------FPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-CCEE-Eeec--------CCCCccceEECCCCCEEEEEECCC
Confidence 34444444 8999999999988754 4899999976 4332 2333 4566778999999997764 4444
Q ss_pred C--cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc------eeEEEccCCceE
Q 003356 329 R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRL 385 (827)
Q Consensus 329 g--~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~i~~W~~~~~~l 385 (827)
+ .|.+|++.++.. ..+..+ .....++.|+|++ ..++..+ .+..++..+++.
T Consensus 256 ~~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~s~dg----~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 256 GNPDIYVMDLDGKQL-TRLTNG-PGIDTEPSWSPDG----KSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred CCccEEEEECCCCCE-EECCCC-CCCCCCEEECCCC----CEEEEEECCCCCceEEEEECCCCCE
Confidence 4 588889887653 333332 2234567888887 5443221 455566655543
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=1.9e-05 Score=88.81 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=40.9
Q ss_pred EEEcCCCCEEEEEec-CC----eEEEEEcCCC-CcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE-cCCcEEEE
Q 003356 262 ASIAPEQQILAVGTR-RG----VVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVW 334 (827)
Q Consensus 262 va~sp~~~lla~g~~-dg----~v~vw~~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~-~Dg~v~vW 334 (827)
.+|||||+.||..+. +| .+..|++... ....+.+.. ++.+.....+|||||+.|+..+ .+|...+|
T Consensus 236 p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~-------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 236 PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN-------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec-------CCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 799999999887653 23 3444666541 112222222 0223446789999999887665 46666666
Q ss_pred ec
Q 003356 335 SV 336 (827)
Q Consensus 335 s~ 336 (827)
.+
T Consensus 309 ~~ 310 (428)
T PRK01029 309 IM 310 (428)
T ss_pred EE
Confidence 44
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=7.6e-06 Score=89.25 Aligned_cols=123 Identities=17% Similarity=0.161 Sum_probs=109.4
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 267 ~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
|-..+|-|...|.|.+|++.. ++....+... .|.+.|.++.|+.+-.+|-+++.|+.+..|+...++.++...
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~-g~it~~~st~------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~ 141 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAG-GEITAKLSTD------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK 141 (541)
T ss_pred CceEEEeecCCccEEEEEecC-CeEEEEEecC------CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec
Confidence 455788899999999999988 7777777642 399999999999999999999999999999999999999887
Q ss_pred cccccceeeeeecCCCCCCccceeecc-eeEEEccCCceEEEEecCCcceEEEEec
Q 003356 347 QISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (827)
Q Consensus 347 ~~~~~~v~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~~~~~~v~~~~~ 401 (827)
.. ...+.+++++||+ ..+++++ .+++|+.++.+++..+.+|.+.|..++|
T Consensus 142 ~~-~~~~~sl~is~D~----~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 142 EQ-KPLVSSLCISPDG----KILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred cC-CCccceEEEcCCC----CEEEeccceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 76 6679999999998 7787777 9999999999999999999999977777
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.45 E-value=0.00063 Score=73.24 Aligned_cols=287 Identities=13% Similarity=0.094 Sum_probs=155.9
Q ss_pred ecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEec----------CcEEEEEEEEe
Q 003356 29 VNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLYLHIFKVQI 98 (827)
Q Consensus 29 pdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~----------dg~l~l~~v~~ 98 (827)
.|..++.+. ++|.|-|.. ....++...-. +++. .+ +||||+.|+++.. +++|.+||+++
T Consensus 18 ~d~~~~~~~--~~v~ViD~~-~~~v~g~i~~G------~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 18 LDPGHFAAT--TQVYTIDGE-AGRVLGMTDGG------FLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred ECCcccccC--ceEEEEECC-CCEEEEEEEcc------CCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc
Confidence 444443333 789999995 66666655311 2333 24 9999999999887 68999999986
Q ss_pred cCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEe-c-CCcEEEEecCCccCcceeecccCCCC
Q 003356 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-S-DGSLYSISWKGEFYGAFELVHSSNDS 176 (827)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t-~-dg~i~~~~w~~~~~~~~~l~~~p~~~ 176 (827)
.+... .+.+..+-+. ..+......++++|++.+++.. . ++.+.+++....+..
T Consensus 87 ~~~~~-------------~i~~p~~p~~-~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv----------- 141 (352)
T TIGR02658 87 HLPIA-------------DIELPEGPRF-LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV----------- 141 (352)
T ss_pred CcEEe-------------EEccCCCchh-hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE-----------
Confidence 54221 1111000000 0122234568889999999876 3 566777655433211
Q ss_pred cccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeecc-CccccceeeccceecC
Q 003356 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELG 255 (827)
Q Consensus 177 ~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~-~~~~~~~~~~~~~~~~ 255 (827)
..++. +++. ..|......+.+.+.||+.+....++ +.... .....+.+
T Consensus 142 ---~ei~v-p~~~------------------------~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~---~~~~vf~~ 190 (352)
T TIGR02658 142 ---RMMDV-PDCY------------------------HIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI---KPTEVFHP 190 (352)
T ss_pred ---EEEeC-CCCc------------------------EEEEecCCccEEEeecCceEEEEecCCCceEE---eeeeeecC
Confidence 11111 0000 01111222334566777776655543 22110 00000001
Q ss_pred CCCcEE--EEEcC-CCCEEEEEecCCeEEEEEcCCCCc-ceEEEEeecCCCC--CCCCCCeEEEEECCCCCEEEEEEc--
Q 003356 256 SGDAVC--ASIAP-EQQILAVGTRRGVVELYDLAESAS-LIRTVSLYDWGYS--MDDTGPVSCIAWTPDNSAFAVGWK-- 327 (827)
Q Consensus 256 h~~~v~--va~sp-~~~lla~g~~dg~v~vw~~~~~~~-~~~~l~~~~~~~~--~~h~~~V~~l~~spDg~~Lasg~~-- 327 (827)
-.+.+- -.|++ +|+++.+... |+|.+-|+..... ....+........ .-..+...-++++|||+.+.+...
T Consensus 191 ~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~ 269 (352)
T TIGR02658 191 EDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQR 269 (352)
T ss_pred CccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCC
Confidence 011111 13455 8888877766 9999988654111 1111111100000 014555666999999998888531
Q ss_pred --------CCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCcc-cee--ec--ceeEEEccCCceEEEEe
Q 003356 328 --------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLM--SG--TSMMQWDEYGYRLYAIE 389 (827)
Q Consensus 328 --------Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~-~l~--sg--~~i~~W~~~~~~l~~~~ 389 (827)
.+.|.++|..+++.+..+.-. ..+..++++||+ . .+. .+ ..+-+.|..+++.+...
T Consensus 270 ~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dg----kp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 270 AKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDA----KPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCC----CeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 147999999999998887643 368899999998 5 222 11 14566677776666554
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.44 E-value=4.2e-05 Score=86.30 Aligned_cols=207 Identities=16% Similarity=0.124 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC---CcEEEEeccCCeeEEEeccccccceee
Q 003356 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMSTIRQISLSSISS 355 (827)
Q Consensus 279 ~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D---g~v~vWs~~~~~l~~tl~~~~~~~v~s 355 (827)
.|.++|.+ +...+.+.. +.+.+.+.+|||||+.||.+..+ ..|.+|++.+++..... .+ ...+.+
T Consensus 171 ~l~~~d~~--g~~~~~l~~--------~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~-~~~~~~ 238 (417)
T TIGR02800 171 ELQVADYD--GANPQTITR--------SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SF-PGMNGA 238 (417)
T ss_pred eEEEEcCC--CCCCEEeec--------CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cC-CCCccc
Confidence 56676664 333444544 56678999999999999987654 47999999887543222 22 234567
Q ss_pred eeecCCCCCCcccee-ecc-----eeEEEccCCceEEEEecCCcceE--EEEec-ceeeeecc-cCCCeeeeEEEEcCCe
Q 003356 356 PIVKPNQDCKYEPLM-SGT-----SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRG-VSGMTYARQVIYGEDR 425 (827)
Q Consensus 356 ~~~sp~~~~~~~~l~-sg~-----~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~-~d~~~~~w~~~~~~~~ 425 (827)
++|+|++ ..++ +.. .+..|+.++++...... +.... ..+++ ++.++..+ .++...+|.+.....+
T Consensus 239 ~~~spDg----~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 239 PAFSPDG----SKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred eEECCCC----CEEEEEECCCCCccEEEEECCCCCEEECCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 8899998 5443 211 57778877665433322 11111 23444 44444332 2333233322211110
Q ss_pred EEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCc---eE-EEEcCCCeEEeeCCccceEEEEEEE
Q 003356 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG---LI-LYDIRQKKWRVFGDITQEQKIQSKG 501 (827)
Q Consensus 426 ~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg---~i-iwd~~t~~w~~f~~~~~e~~~~v~g 501 (827)
...+..+...+...+|||||++++.++.++ .+ +||+.++.++.+.... ....
T Consensus 314 -------------------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-----~~~~ 369 (417)
T TIGR02800 314 -------------------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG-----LDES 369 (417)
T ss_pred -------------------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC-----CCCC
Confidence 111112233456789999999999998876 67 9999988776653221 1123
Q ss_pred EEEe--CCEEEEEEEeeCCCcEEEEEeeC
Q 003356 502 LLWL--GKIIVVCNYIDSSNTYELLFYPR 528 (827)
Q Consensus 502 l~W~--~~~li~~~~~~~~~~~~lrly~~ 528 (827)
..|. +..++.++. ..+...+.++..
T Consensus 370 p~~spdg~~l~~~~~--~~~~~~l~~~~~ 396 (417)
T TIGR02800 370 PSFAPNGRMILYATT--RGGRGVLGLVST 396 (417)
T ss_pred ceECCCCCEEEEEEe--CCCcEEEEEEEC
Confidence 4565 345555533 234455666654
No 259
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.39 E-value=0.0056 Score=65.43 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=63.6
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCC-eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg-~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
.+|...|. ..+.-+.+-++.|..|| .+-+||.+. ...+.+.. .-|.|.+++.+|||+.++++.....+
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~--------~lg~I~av~vs~dGK~~vvaNdr~el 425 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVKRIEK--------DLGNIEAVKVSPDGKKVVVANDRFEL 425 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEEEeeC--------CccceEEEEEcCCCcEEEEEcCceEE
Confidence 45666677 88888888999999999 999999875 44445555 57889999999999999999988888
Q ss_pred EEEeccCCe
Q 003356 332 TVWSVSGCR 340 (827)
Q Consensus 332 ~vWs~~~~~ 340 (827)
-+.|+.++.
T Consensus 426 ~vididngn 434 (668)
T COG4946 426 WVIDIDNGN 434 (668)
T ss_pred EEEEecCCC
Confidence 888988775
No 260
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=5.5e-06 Score=88.00 Aligned_cols=285 Identities=11% Similarity=0.112 Sum_probs=162.5
Q ss_pred ceEEEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhc-CcccEEEEcC--CccEEEEEecCcEEEEEEEE
Q 003356 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSP--DTKLIAVVTSSLYLHIFKVQ 97 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~-G~~~~v~wSP--Dg~~lav~t~dg~l~l~~v~ 97 (827)
..-|.|+..|..+++++ +.+|.+|+-- ...+...+. ..| -.+....|-| +.+.|++.+.||.+++=.+.
T Consensus 145 VntV~FN~~Gd~l~SgSDD~~vv~WdW~-~~~~~l~f~------SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 145 VNTVHFNQRGDVLASGSDDLQVVVWDWV-SGSPKLSFE------SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred cceeeecccCceeeccCccceEEeehhh-ccCcccccc------cccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 44578999999999996 4689999983 332222111 111 1223344655 34679999999999887775
Q ss_pred ecCceeecCCCCCCCceeeeEeeEeecccccccccceEE--EeecC-CCeEEEEecCCcEEEEecCCccCcceeecccCC
Q 003356 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSN 174 (827)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~d-~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~ 174 (827)
..... +....+..+.++|. ++.++ ...++.++.|+.+.-++......... +
T Consensus 218 ~t~~~--------------------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~-~----- 271 (559)
T KOG1334|consen 218 ETGYV--------------------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK-F----- 271 (559)
T ss_pred cccce--------------------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce-e-----
Confidence 33210 11111222222332 33333 35688888888877655332211110 0
Q ss_pred CCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee-
Q 003356 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE- 253 (827)
Q Consensus 175 ~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~- 253 (827)
.... ........+.+|+.+|... ..++++..+.-.++++.......
T Consensus 272 -----------------~cr~-------~~~~~~v~L~~Ia~~P~nt---------~~faVgG~dqf~RvYD~R~~~~e~ 318 (559)
T KOG1334|consen 272 -----------------VCRE-------ADEKERVGLYTIAVDPRNT---------NEFAVGGSDQFARVYDQRRIDKEE 318 (559)
T ss_pred -----------------eeec-------cCCccceeeeeEecCCCCc---------cccccCChhhhhhhhcccchhhcc
Confidence 0000 0000112344555444332 13333444433444443321110
Q ss_pred ---------------cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCC-C----------cceE-EEEeecCCCCCCC
Q 003356 254 ---------------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES-A----------SLIR-TVSLYDWGYSMDD 306 (827)
Q Consensus 254 ---------------~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~-~----------~~~~-~l~~~~~~~~~~h 306 (827)
..+...+|+++++++.-|.+...|-.|.+++-... + ..++ ..++ |
T Consensus 319 ~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKG--------H 390 (559)
T KOG1334|consen 319 NNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKG--------H 390 (559)
T ss_pred ccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcc--------c
Confidence 12344667999988766666677888999854321 1 0111 1333 5
Q ss_pred CC--CeEEEEE-CCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEcc
Q 003356 307 TG--PVSCIAW-TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (827)
Q Consensus 307 ~~--~V~~l~~-spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~ 380 (827)
.. .|+.+-| -|...++++|++.|.|.+|+-.+++++.-+.+. ..-|+++.-+|-. ..|++.. .+++|.+
T Consensus 391 rN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD-r~VVNCLEpHP~~----PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 391 RNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD-RHVVNCLEPHPHL----PVLASSGIDHDVKIWTP 465 (559)
T ss_pred ccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-cceEeccCCCCCC----chhhccCCccceeeecC
Confidence 43 4777765 688899999999999999999999988887775 3378898888876 5565544 8999999
Q ss_pred CCceE
Q 003356 381 YGYRL 385 (827)
Q Consensus 381 ~~~~l 385 (827)
.+.+.
T Consensus 466 ~~~er 470 (559)
T KOG1334|consen 466 LTAER 470 (559)
T ss_pred Ccccc
Confidence 66553
No 261
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.38 E-value=0.00015 Score=77.95 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=63.5
Q ss_pred CCCCcEE-EEEcCCCCEEEEEe--cCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC---
Q 003356 255 GSGDAVC-ASIAPEQQILAVGT--RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS--- 328 (827)
Q Consensus 255 ~h~~~v~-va~sp~~~lla~g~--~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D--- 328 (827)
+-.++|. .+|+|+++.+|+.+ .+.++.++|++. .... .. ..++=+.+-|||.+++++.++-|
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~--Nl~~--~~--------Pe~~rNT~~fsp~~r~il~agF~nl~ 339 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG--NLRF--YF--------PEQKRNTIFFSPHERYILFAGFDNLQ 339 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeeccccc--ceEE--ec--------CCcccccccccCcccEEEEecCCccc
Confidence 4467888 99999999887654 778899999875 2222 22 23445778999999998887765
Q ss_pred CcEEEEeccCCeeEE-EeccccccceeeeeecCCC
Q 003356 329 RGLTVWSVSGCRLMS-TIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 329 g~v~vWs~~~~~l~~-tl~~~~~~~v~s~~~sp~~ 362 (827)
|.+-+|+..++..+. .+.+. ..+-+.|+|++
T Consensus 340 gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~ 371 (561)
T COG5354 340 GNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDG 371 (561)
T ss_pred cceEEeccCCceEEEEEeecC---CceEeeccCCc
Confidence 578999998876554 44332 12233455555
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=7e-05 Score=84.88 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=63.4
Q ss_pred CCCCcEE-EEEcCCCCEEEEEecC---CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEE-EEcCC
Q 003356 255 GSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKSR 329 (827)
Q Consensus 255 ~h~~~v~-va~sp~~~lla~g~~d---g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Las-g~~Dg 329 (827)
.+...+. .+|||||+.||..+.+ ..|.+|++.+ +.. +.+.. ..+.+...+|||||+.|+. ...+|
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~-~~l~~--------~~g~~~~~~~SpDG~~la~~~~~~g 265 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRR-EQITN--------FEGLNGAPAWSPDGSKLAFVLSKDG 265 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCE-EEccC--------CCCCcCCeEECCCCCEEEEEEccCC
Confidence 3344444 8999999999877644 3688889876 433 22222 3345567899999998874 44455
Q ss_pred --cEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 330 --GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 330 --~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
.|.+||+.++... .+..+ .....++.|+|++
T Consensus 266 ~~~Iy~~d~~~~~~~-~lt~~-~~~~~~~~~spDg 298 (430)
T PRK00178 266 NPEIYVMDLASRQLS-RVTNH-PAIDTEPFWGKDG 298 (430)
T ss_pred CceEEEEECCCCCeE-EcccC-CCCcCCeEECCCC
Confidence 5778899887643 34333 2345667899988
No 263
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=2.1e-05 Score=81.70 Aligned_cols=216 Identities=11% Similarity=0.024 Sum_probs=130.2
Q ss_pred ecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEE-EecC--cEEEEEEEEecCceeec
Q 003356 29 VNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAV-VTSS--LYLHIFKVQITEKSIQI 105 (827)
Q Consensus 29 pdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav-~t~d--g~l~l~~v~~~~~~~~~ 105 (827)
.||.+++..+++.+++|.. |-...- .....-++..+....+.=.|....|+. |+.. +.+.+||++.. .+.+.
T Consensus 114 ~dg~Litc~~sG~l~~~~~-k~~d~h---ss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~ 188 (412)
T KOG3881|consen 114 ADGTLITCVSSGNLQVRHD-KSGDLH---SSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWS 188 (412)
T ss_pred cCCEEEEEecCCcEEEEec-cCCccc---cccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeee
Confidence 4566666668899999998 422110 000001122344456666776665554 7777 78999999866 33332
Q ss_pred CCC-CC----CCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccc
Q 003356 106 GGK-QP----SGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (827)
Q Consensus 106 ~~~-~~----~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~ 180 (827)
... .. -+.++|..+..+-. +. +...++.+|.-+.+++|+-..+..
T Consensus 189 aKNvpnD~L~LrVPvW~tdi~Fl~-----g~---------~~~~fat~T~~hqvR~YDt~~qRR---------------- 238 (412)
T KOG3881|consen 189 AKNVPNDRLGLRVPVWITDIRFLE-----GS---------PNYKFATITRYHQVRLYDTRHQRR---------------- 238 (412)
T ss_pred ccCCCCccccceeeeeeccceecC-----CC---------CCceEEEEecceeEEEecCcccCc----------------
Confidence 211 11 12445544332211 10 146788899999999875542211
Q ss_pred eecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce----ecCC
Q 003356 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----ELGS 256 (827)
Q Consensus 181 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~----~~~h 256 (827)
+|.+++|....-.+....|+|+.+.++...+.+..+|...... +.+.
T Consensus 239 -----------------------------PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 239 -----------------------------PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred -----------------------------ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 1222222222233345788899888888788888888776543 2455
Q ss_pred CCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC
Q 003356 257 GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD 318 (827)
Q Consensus 257 ~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD 318 (827)
.+.++ +..+|.++++|+++-|..|||+|+++ .+++..... ....+++-+.++
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD~kt-rkll~kvYv---------Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT-RKLLHKVYV---------KSRLTFILLRDD 342 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEeeccc-chhhhhhhh---------hccccEEEecCC
Confidence 67777 99999999999999999999999988 555543332 233566666554
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.32 E-value=0.0013 Score=70.04 Aligned_cols=92 Identities=14% Similarity=0.340 Sum_probs=69.2
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC----cEEEEe
Q 003356 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR----GLTVWS 335 (827)
Q Consensus 260 v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg----~v~vWs 335 (827)
-.+..+|+|+.++++-....+-+.|+++ +. .+.+... ..+-|+...|+|+++++|-+--+| .|+++|
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididn-gn-v~~idkS-------~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd 475 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDN-GN-VRLIDKS-------EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD 475 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecC-CC-eeEeccc-------ccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence 3489999999999999999999999987 33 3333221 467799999999999999775544 799999
Q ss_pred ccCCeeEEEeccccccceeeeeecCCC
Q 003356 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+.+++....-.. ++.-.+++|.|++
T Consensus 476 m~~~Kiy~vTT~--ta~DfsPaFD~d~ 500 (668)
T COG4946 476 MDGGKIYDVTTP--TAYDFSPAFDPDG 500 (668)
T ss_pred cCCCeEEEecCC--cccccCcccCCCC
Confidence 999886654332 2234567888877
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=6.2e-05 Score=85.33 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=61.2
Q ss_pred CCcEE-EEEcCCCCEEEEEecC-C--eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEE-EEcCCc-
Q 003356 257 GDAVC-ASIAPEQQILAVGTRR-G--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKSRG- 330 (827)
Q Consensus 257 ~~~v~-va~sp~~~lla~g~~d-g--~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Las-g~~Dg~- 330 (827)
...+. .+|||||+.||..+.+ + .|.+||+.+ ++. ..+.. ..+.....+|||||+.||. ...++.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t-g~~-~~lt~--------~~g~~~~~~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT-QVR-EKVTS--------FPGINGAPRFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCC-CCe-EEecC--------CCCCcCCeeECCCCCEEEEEEeCCCCe
Confidence 33444 8999999999887643 3 578888876 433 22222 2333457899999998875 455665
Q ss_pred -EEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 331 -LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 331 -v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
|.++++.++.. ..+..+ ......+.|+|++
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~-~~~~~~p~wSpDG 317 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRH-RAIDTEPSWHPDG 317 (448)
T ss_pred EEEEEECCCCCe-EECccC-CCCccceEECCCC
Confidence 77778877754 333333 2345678899988
No 266
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.29 E-value=1.5e-06 Score=61.61 Aligned_cols=38 Identities=29% Similarity=0.619 Sum_probs=34.7
Q ss_pred cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 003356 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (827)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs 335 (827)
++++++++ |.++|++|+|+|++.+||+|+.|+.|++||
T Consensus 2 ~~~~~~~~--------h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG--------HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEES--------SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcC--------CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35667777 999999999999999999999999999997
No 267
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=2.3e-05 Score=81.33 Aligned_cols=134 Identities=22% Similarity=0.234 Sum_probs=100.1
Q ss_pred Cccccceeecccee----------cCCCCcEE---EEEcCC--CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCC
Q 003356 240 KGLKLAEFIKIDKE----------LGSGDAVC---ASIAPE--QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (827)
Q Consensus 240 ~~~~~~~~~~~~~~----------~~h~~~v~---va~sp~--~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~ 304 (827)
..+++|+....++. .+-.-+|+ +.|-+. ...+|+++.-+.||+||.....+++..+..
T Consensus 173 n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~------- 245 (412)
T KOG3881|consen 173 NELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF------- 245 (412)
T ss_pred cceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-------
Confidence 45667776655332 12222333 667776 789999999999999999874566766665
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEE-eccccccceeeeeecCCCCCCccceeecc---eeEEEcc
Q 003356 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (827)
Q Consensus 305 ~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~t-l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~ 380 (827)
-..+++++...|+|+.+.+|..-|.+..+|..++++... +.+. ..+++++..+|.. ..+++++ .+++.|.
T Consensus 246 -~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGsirsih~hp~~----~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 246 -LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGSIRSIHCHPTH----PVLASCGLDRYVRIHDI 319 (412)
T ss_pred -ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCCcceEEEcCCC----ceEEeeccceeEEEeec
Confidence 567899999999999999999999999999999887554 6665 6778888888886 6666665 5667777
Q ss_pred CCceEE
Q 003356 381 YGYRLY 386 (827)
Q Consensus 381 ~~~~l~ 386 (827)
.+.+++
T Consensus 320 ktrkll 325 (412)
T KOG3881|consen 320 KTRKLL 325 (412)
T ss_pred ccchhh
Confidence 664443
No 268
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.25 E-value=0.0002 Score=70.93 Aligned_cols=179 Identities=12% Similarity=0.069 Sum_probs=102.4
Q ss_pred cEEEEcCCc-----cEEEEEecCcEEEEEEEEecCceeec-CCCCCCCceeeeEeeEeecccccccccceEEEeecCCCe
Q 003356 71 LQAVWSPDT-----KLIAVVTSSLYLHIFKVQITEKSIQI-GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (827)
Q Consensus 71 ~~v~wSPDg-----~~lav~t~dg~l~l~~v~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~ 144 (827)
..+.|.|.+ -+||++++.|.+.+|...+.....+. ..+. ..+++ +.-.+-....
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn------n~v~~--------------~~r~cd~~~~ 130 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSN------NDVTL--------------VKRYCDLKFP 130 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccc------cchhh--------------hhhhcccccc
Confidence 466677654 47999999999999998755432211 0000 00000 0011112346
Q ss_pred EEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEE
Q 003356 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (827)
Q Consensus 145 llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (827)
+.+++.|.+++.+..++....... . .......+ +
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~----------------------------------h--~~~~~~ns----------~ 164 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAV----------------------------------H--NQNLTQNS----------L 164 (344)
T ss_pred eeeccCCcceeEEEEecCccccee----------------------------------e--ccccceee----------e
Confidence 788888888888777755433210 0 00011333 3
Q ss_pred EEEeCCcEEEEeeccCccccceeeccce------e-cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEe
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK------E-LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~~~~------~-~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
.+++|++..++..+...+..+.+..... . .......+.+||.+..++|++..||++.|||++..+.+......
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 3555555555544443333332221110 1 12234567999999999999999999999999874433333222
Q ss_pred ecCCCCCCCCCCeEEEEECCCC
Q 003356 298 YDWGYSMDDTGPVSCIAWTPDN 319 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spDg 319 (827)
..+.|.|+++.+.|||-|
T Consensus 245 ----trp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 245 ----TRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred ----cCCCCCCceEEEEecCCC
Confidence 123499999999999854
No 269
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=9e-05 Score=80.49 Aligned_cols=118 Identities=17% Similarity=0.284 Sum_probs=75.4
Q ss_pred CCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee-cCCCCcEEEEEcCCCCEEEEEecC---CeEE
Q 003356 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVCASIAPEQQILAVGTRR---GVVE 281 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~va~sp~~~lla~g~~d---g~v~ 281 (827)
.+.++|.++.|++...-|+++.- ..-..+.+++...-... .+....-++-|||.|++|+.++-+ |.|.
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyG--------fMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYG--------FMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEe--------cccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceE
Confidence 45677888776665544443321 11112223332211111 121222348999999999988765 8999
Q ss_pred EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE------cCCcEEEEeccCCeeE
Q 003356 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW------KSRGLTVWSVSGCRLM 342 (827)
Q Consensus 282 vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~------~Dg~v~vWs~~~~~l~ 342 (827)
+||+.+ .+++..+.. . .-+-++|+|||+++.++. -|++++||+..|..+.
T Consensus 340 vwDv~n-~K~i~~~~a---------~-~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 340 VWDVPN-RKLIAKFKA---------A-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred EEeccc-hhhcccccc---------C-CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 999988 666665554 2 236689999999998875 4799999999987643
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=0.0006 Score=73.97 Aligned_cols=305 Identities=12% Similarity=0.120 Sum_probs=148.9
Q ss_pred CceEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecC-----------c
Q 003356 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS-----------L 89 (827)
Q Consensus 21 ~~~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~d-----------g 89 (827)
++..+.+||-|.+|++.....|.+|-.. . +.|..+- -|-.+..+.|||.-++|++-+.. .
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~-~------f~r~~RF--~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQGIALWGGE-S------FDRIQRF--YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeeEEecCCceEEEEEeccceeeecCc-c------HHHHHhc--cCCCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 4678999999999999999999999773 2 2332221 24456779999999999996631 4
Q ss_pred EEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceee
Q 003356 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (827)
Q Consensus 90 ~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l 169 (827)
.++|||+.++.......... .....| ++.-.+.|+++++--+.++ |.++.-... ..+
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~-~~~~~W-----------------P~frWS~DdKy~Arm~~~s-isIyEtpsf----~ll 339 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIK-SPYLKW-----------------PIFRWSHDDKYFARMTGNS-ISIYETPSF----MLL 339 (698)
T ss_pred eEEEEEccccchhcceeccC-CCcccc-----------------ceEEeccCCceeEEeccce-EEEEecCce----eee
Confidence 68999998775322211100 011111 1222233444444333322 333322111 011
Q ss_pred cccCCCCcccceecccCCCCc-cccc-cCCcee-cc--ccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccc-
Q 003356 170 VHSSNDSSVAALSHHFPSNGL-ASVD-TSGAFV-SD--HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK- 243 (827)
Q Consensus 170 ~~~p~~~~~i~~~~~s~~~~~-~~~~-~~~~~~-~~--~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~- 243 (827)
..++.....++...+++...+ +... +..+.. +. .-.+.+..|...-...-.+..+-.-.+|..+.+-.+..+-.
T Consensus 340 d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~ 419 (698)
T KOG2314|consen 340 DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK 419 (698)
T ss_pred cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc
Confidence 112222333333333443332 1111 111000 00 00111222211111111122234445666665544332211
Q ss_pred ----cceee--cc--cee----cCCCCcEE-EEEcCCCCEEEEEecC---CeEEEEEcCCCCc---ceEEEEeecCCCCC
Q 003356 244 ----LAEFI--KI--DKE----LGSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESAS---LIRTVSLYDWGYSM 304 (827)
Q Consensus 244 ----~~~~~--~~--~~~----~~h~~~v~-va~sp~~~lla~g~~d---g~v~vw~~~~~~~---~~~~l~~~~~~~~~ 304 (827)
..+.. .. +.. ..-.+.+- .+|-|.|+.+|+-+.+ .++++|.+.+... ++..+.
T Consensus 420 ~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-------- 491 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-------- 491 (698)
T ss_pred ccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--------
Confidence 01110 00 000 12233443 8999999988875543 5899999874222 222222
Q ss_pred CCCCCeEEEEECCCCCEEEEEE---cCCcEEEEeccCCeeEE-EeccccccceeeeeecCCCCCCccceeecc
Q 003356 305 DDTGPVSCIAWTPDNSAFAVGW---KSRGLTVWSVSGCRLMS-TIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 305 ~h~~~V~~l~~spDg~~Lasg~---~Dg~v~vWs~~~~~l~~-tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
....+.+.|||.|+.++++. ..|.+..+|+.-..+.. ....| ...+.+.|.|.| .++.+++
T Consensus 492 --k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh--~~at~veWDPtG----RYvvT~s 556 (698)
T KOG2314|consen 492 --KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH--FAATEVEWDPTG----RYVVTSS 556 (698)
T ss_pred --ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc--cccccceECCCC----CEEEEee
Confidence 23467899999999988764 45788888876321111 11122 124455566666 5555444
No 271
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.19 E-value=0.00069 Score=68.38 Aligned_cols=233 Identities=14% Similarity=0.125 Sum_probs=114.4
Q ss_pred EEEEeCCcEEEEeeccCccccce------eecccee---cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEE
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAE------FIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~------~~~~~~~---~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~ 294 (827)
++.++||+++++..+ ..+.+-. ...+++. ..+...-.++||||+.+||.+...|+|++||+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~qd-~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQD-QCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG--SELFV 79 (282)
T ss_pred eeecCCCcEEEEEec-cEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc--ceeEE
Confidence 456788988886543 2222211 1111111 1122344599999999999999999999999864 44444
Q ss_pred EEeecCCCCCCCCCCeEEEEECCCC------CEEEEEEcCCcEEEEeccCC-----eeEEEeccccccceeeeeecCCCC
Q 003356 295 VSLYDWGYSMDDTGPVSCIAWTPDN------SAFAVGWKSRGLTVWSVSGC-----RLMSTIRQISLSSISSPIVKPNQD 363 (827)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spDg------~~Lasg~~Dg~v~vWs~~~~-----~l~~tl~~~~~~~v~s~~~sp~~~ 363 (827)
+..... ....-..+|..|.|.+-- .-|.+-..+|.++=+-+..+ +..+++ .|+
T Consensus 80 I~p~~~-~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf-----------sf~---- 143 (282)
T PF15492_consen 80 IPPAMS-FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF-----------SFS---- 143 (282)
T ss_pred cCcccc-cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE-----------Eec----
Confidence 433210 111234567777776521 22333333466666655221 122221 111
Q ss_pred CCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCc-------
Q 003356 364 CKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE------- 436 (827)
Q Consensus 364 ~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~------- 436 (827)
..+.-|+...+|+++.. ++.+...+... .-.+...+..+..|.++.+..-.......+...
T Consensus 144 ---~~yp~Gi~~~vy~p~h~-LLlVgG~~~~~--------~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~ 211 (282)
T PF15492_consen 144 ---SHYPHGINSAVYHPKHR-LLLVGGCEQNQ--------DGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRR 211 (282)
T ss_pred ---ccCCCceeEEEEcCCCC-EEEEeccCCCC--------CccccccccCceEEEEcCCCCcEEEccccCcccccccccc
Confidence 11122344555555432 22221111000 000111122244455555443322222211110
Q ss_pred ceEEEee--eceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC----CeEEe
Q 003356 437 LKILHLN--LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ----KKWRV 487 (827)
Q Consensus 437 ~~w~~~~--~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t----~~w~~ 487 (827)
..|.... .-.........|..+.+||||+.||+..-+|.+ +|++-+ ++|+.
T Consensus 212 ~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 212 GLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 1122110 000111234568999999999999999999999 999965 45653
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=0.00013 Score=80.74 Aligned_cols=148 Identities=13% Similarity=0.166 Sum_probs=103.9
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccc--c------ceeeccceecCCCCcEE-EEEcCCCCEEEEEe
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK--L------AEFIKIDKELGSGDAVC-ASIAPEQQILAVGT 275 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~--~------~~~~~~~~~~~h~~~v~-va~sp~~~lla~g~ 275 (827)
.+....+..++|....+.+++...||.+-+.--...+.. . -+..-.+.+.||...|. +.||...+-|-+..
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 345667888899988888888889998766544322211 1 11111223478999998 99999999999999
Q ss_pred cCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEE-Eecccccccee
Q 003356 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS-TIRQISLSSIS 354 (827)
Q Consensus 276 ~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~-tl~~~~~~~v~ 354 (827)
.+|.|.||-+-. ++.....-.. -.+..|.+++|+.||+.++..++||.|.|=++.|++... .|++.. ..
T Consensus 91 t~GlIiVWmlyk-gsW~EEMiNn------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~---l~ 160 (1189)
T KOG2041|consen 91 TSGLIIVWMLYK-GSWCEEMINN------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL---LA 160 (1189)
T ss_pred CCceEEEEeeec-ccHHHHHhhC------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe---cc
Confidence 999999999877 4332211110 045679999999999999999999999999999887653 333321 23
Q ss_pred eeeecCCC
Q 003356 355 SPIVKPNQ 362 (827)
Q Consensus 355 s~~~sp~~ 362 (827)
.+.+++|.
T Consensus 161 hv~ws~D~ 168 (1189)
T KOG2041|consen 161 HVLWSEDL 168 (1189)
T ss_pred ceeecccH
Confidence 45666665
No 273
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=0.00017 Score=81.71 Aligned_cols=146 Identities=12% Similarity=0.085 Sum_probs=82.8
Q ss_pred EEEEeCCcEEEEeecc-C--ccccceeeccce--ecCCCCcE-EEEEcCCCCEEEE-EecCC--eEEEEEcCCCCcceEE
Q 003356 224 FVLYSNGQLMSCSVSK-K--GLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAV-GTRRG--VVELYDLAESASLIRT 294 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~-~--~~~~~~~~~~~~--~~~h~~~v-~va~sp~~~lla~-g~~dg--~v~vw~~~~~~~~~~~ 294 (827)
..++|||+.++..+.+ + .+.+++...++. +....... ..+|+|||+.||. ...+| .|.+||+++ +. .+.
T Consensus 204 p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~-~~-~~~ 281 (430)
T PRK00178 204 PRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS-RQ-LSR 281 (430)
T ss_pred eeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEE
Confidence 4577888766655432 2 244555544432 12222223 3899999998885 44455 577778876 33 333
Q ss_pred EEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc-CC--cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceee
Q 003356 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (827)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~-Dg--~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~s 371 (827)
+.. +.+......|+|||+.|+..+. ++ .|.++++.++.... +... ......+.|+|++ ..++-
T Consensus 282 lt~--------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~-~~~~~~~~~Spdg----~~i~~ 347 (430)
T PRK00178 282 VTN--------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV-GNYNARPRLSADG----KTLVM 347 (430)
T ss_pred ccc--------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC-CCCccceEECCCC----CEEEE
Confidence 333 4455667899999998876654 33 46677777765322 2211 1123456788887 44331
Q ss_pred cc------eeEEEccCCceE
Q 003356 372 GT------SMMQWDEYGYRL 385 (827)
Q Consensus 372 g~------~i~~W~~~~~~l 385 (827)
.. .+..|+..+++.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred EEccCCceEEEEEECCCCCE
Confidence 11 355666665544
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.05 E-value=7.7e-05 Score=76.28 Aligned_cols=79 Identities=16% Similarity=0.282 Sum_probs=69.4
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEE
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
.+|.+.+. .+|.|..+++.+|..|..|.+||+.........+.+ |.+.|..+..-+--+.|.++++||.|.
T Consensus 194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g--------h~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG--------HNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc--------chhhhhhhhhhhhheeeeeccCCCeEE
Confidence 67888876 999999999999999999999999764445556777 999999999999999999999999999
Q ss_pred EEeccCCe
Q 003356 333 VWSVSGCR 340 (827)
Q Consensus 333 vWs~~~~~ 340 (827)
+|+..-.+
T Consensus 266 ~w~mn~~r 273 (404)
T KOG1409|consen 266 VWNMNVKR 273 (404)
T ss_pred EEecccee
Confidence 99997654
No 275
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.05 E-value=7e-05 Score=78.31 Aligned_cols=85 Identities=18% Similarity=0.339 Sum_probs=69.1
Q ss_pred ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 253 ~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
..||-..+. ++|+||++.|.++..|..||+=.... .-.+..+- -+|+.-|..++.-++ +.|++|+.|+++
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~Iesfc-------lGH~eFVS~isl~~~-~~LlS~sGD~tl 217 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFC-------LGHKEFVSTISLTDN-YLLLSGSGDKTL 217 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhc-------cccHhheeeeeeccC-ceeeecCCCCcE
Confidence 478999998 99999999999999999999966654 22333222 249999999998764 669999999999
Q ss_pred EEEeccCCeeEEEec
Q 003356 332 TVWSVSGCRLMSTIR 346 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~ 346 (827)
++||..+|+++.++.
T Consensus 218 r~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 218 RLWDITSGKLLDTCD 232 (390)
T ss_pred EEEecccCCcccccc
Confidence 999999998876653
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.05 E-value=5e-05 Score=84.47 Aligned_cols=96 Identities=20% Similarity=0.395 Sum_probs=71.5
Q ss_pred cCCCCcEE-EEEcCCC-CEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCc
Q 003356 254 LGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRG 330 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~-~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~ 330 (827)
-||+.++. +.|+|+. ..+|+++.|..|..||+......+..... | |+ +-..++|+. |+..||+.-. +.
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~--w-----~s-~asqVkwnyk~p~vlasshg-~~ 181 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS--W-----RS-AASQVKWNYKDPNVLASSHG-ND 181 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec--c-----cc-cCceeeecccCcchhhhccC-Cc
Confidence 57888998 9999875 58999999999999999885555554443 1 33 357899998 6777776554 78
Q ss_pred EEEEec-cCCeeEEEeccccccceeeeeec
Q 003356 331 LTVWSV-SGCRLMSTIRQISLSSISSPIVK 359 (827)
Q Consensus 331 v~vWs~-~~~~l~~tl~~~~~~~v~s~~~s 359 (827)
|++||. .|+...+++++| ...++++.|.
T Consensus 182 i~vwd~r~gs~pl~s~K~~-vs~vn~~~fn 210 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGH-VSSVNSIDFN 210 (1081)
T ss_pred eEEEeccCCCcceEEeccc-ceeeehHHHh
Confidence 999998 456678888875 5556665553
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.00061 Score=76.26 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=43.4
Q ss_pred EEEcCCCCEEEEEecC---------CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC---
Q 003356 262 ASIAPEQQILAVGTRR---------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--- 329 (827)
Q Consensus 262 va~sp~~~lla~g~~d---------g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg--- 329 (827)
.+|||||+.||..+.. ..|.+.++++ +. .+.+.. .+.....+|||||+.|+-...++
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~-~~~LT~---------~~~~~~p~~SPDG~~I~f~~~~~~~~ 392 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY-IRRLTA---------NGVNQFPRFSSDGGSIMFIKYLGNQS 392 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC-eEECCC---------CCCcCCeEECCCCCEEEEEEccCCcE
Confidence 5899999999877654 2567777765 33 333332 12233588999999887665433
Q ss_pred cEEEEeccCCe
Q 003356 330 GLTVWSVSGCR 340 (827)
Q Consensus 330 ~v~vWs~~~~~ 340 (827)
.+.+.++.|+.
T Consensus 393 ~L~~~~l~g~~ 403 (419)
T PRK04043 393 ALGIIRLNYNK 403 (419)
T ss_pred EEEEEecCCCe
Confidence 35566776653
No 278
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.97 E-value=0.00041 Score=69.77 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=79.2
Q ss_pred EEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEcCCCC
Q 003356 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESA 289 (827)
Q Consensus 212 ~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-va~sp~-~~lla~g~~dg~v~vw~~~~~~ 289 (827)
.+++++.....+++-.++|++..+...+ -...+.+.|+.|+-..+ ++|+.. -+++.+|+.||.+..||++-+.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~-----~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETE-----MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecce-----eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 3455555555555555666665322222 22233445677776666 777653 4689999999999999998534
Q ss_pred cceE-EEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccC
Q 003356 290 SLIR-TVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 290 ~~~~-~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~ 338 (827)
..+. ..+. |+..|.++.-|| ++.++|+|+.|-.|++||...
T Consensus 200 ~~i~~n~kv--------H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 200 TFIWHNSKV--------HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred ceeeeccee--------eecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 3333 2344 899999999987 799999999999999999863
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.97 E-value=0.0025 Score=79.45 Aligned_cols=116 Identities=10% Similarity=0.080 Sum_probs=76.9
Q ss_pred EEEEeCCc-EEEEeeccCccccceeecccee--c-------------C----------CCCcEEEEEcCCCCEEEEEecC
Q 003356 224 FVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE--L-------------G----------SGDAVCASIAPEQQILAVGTRR 277 (827)
Q Consensus 224 ~~~s~dG~-~~~~~~~~~~~~~~~~~~~~~~--~-------------~----------h~~~v~va~sp~~~lla~g~~d 277 (827)
+++++||+ ++++...++.++.|+..++... . + ...+..++++++|.++++-+.+
T Consensus 745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N 824 (1057)
T PLN02919 745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN 824 (1057)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence 45677776 6666666667777765432110 0 0 1123458899999999998999
Q ss_pred CeEEEEEcCCCCcceEEEEee-cCCC-----CCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee
Q 003356 278 GVVELYDLAESASLIRTVSLY-DWGY-----SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (827)
Q Consensus 278 g~v~vw~~~~~~~~~~~l~~~-~~~~-----~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l 341 (827)
+.|++||..+ +... ++.+. ..++ ..+.-.....|++++||+++++-..++.|++||+.++..
T Consensus 825 ~rIrviD~~t-g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 825 HKIKKLDPAT-KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCC-CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999999876 4332 22221 0011 111223567899999999999888999999999988764
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=1.6e-05 Score=85.27 Aligned_cols=175 Identities=17% Similarity=0.217 Sum_probs=104.7
Q ss_pred cCCCCcEE--EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 254 LGSGDAVC--ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 254 ~~h~~~v~--va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
.||...++ .+++ +.+-+++++.|.+|++|.+..++..+.+. .-+|.|. +|+.+|.++.|-.|.+.+|++ ||++
T Consensus 732 ~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~ts-aCQfTY~-aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTS-ACQFTYQ-AHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred cCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccc-eeeeEhh-hccCcccceeeeeccceeeec--cCcc
Confidence 67887777 3444 44557789999999999998744332211 1111111 299999999999999988765 7899
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccC
Q 003356 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVS 411 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d 411 (827)
.+||.+-++++....+.... + +|..++.- ..-...+ .++-++..
T Consensus 807 HlWDPFigr~Laq~~dapk~----------~--------a~~~ikcl-----------~nv~~~i-------liAgcsae 850 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKE----------G--------AGGNIKCL-----------ENVDRHI-------LIAGCSAE 850 (1034)
T ss_pred eeecccccchhHhhhcCccc----------C--------CCceeEec-----------ccCcchh-------eeeeccch
Confidence 99999988876544332000 0 01111110 0000000 01112334
Q ss_pred CCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
.++++.|....+-. ..|+.. .-.+.|.-++++++-+.|+.+|+|-.+|.+ +-|.++|+
T Consensus 851 STVKl~DaRsce~~-----------~E~kVc----na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 851 STVKLFDARSCEWT-----------CELKVC----NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred hhheeeecccccce-----------eeEEec----cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 45555443332210 011111 112334568999999999999999999999 99999986
No 281
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=0.00071 Score=73.45 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=73.8
Q ss_pred CcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceee-cccee-----cCCCCcEEEEEcCCCCEEEEEe---cC
Q 003356 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI-KIDKE-----LGSGDAVCASIAPEQQILAVGT---RR 277 (827)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~-~~~~~-----~~h~~~v~va~sp~~~lla~g~---~d 277 (827)
-+..|...+|.|.++.+++++.+-. ..++..+... ...++ .....+..+.|+|.|++++++. ..
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~-------k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~ 516 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTV-------KNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRR 516 (698)
T ss_pred cchheeeeeeccCCCeEEEEEcccc-------ccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccc
Confidence 3455777788888888777775543 1222222222 11111 1112333499999999988764 57
Q ss_pred CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc------CCcEEEEeccCCee
Q 003356 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRL 341 (827)
Q Consensus 278 g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~------Dg~v~vWs~~~~~l 341 (827)
|.+..||.+- .....+- ++.|.+ .+.+.|.|.|+++.+++. |.+-++|+..|..+
T Consensus 517 g~l~F~D~~~-a~~k~~~-------~~eh~~-at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 517 GDLEFYDTDY-ADLKDTA-------SPEHFA-ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred cceEEEecch-hhhhhcc-------Cccccc-cccceECCCCCEEEEeeehhhhccccceEEEEeecHHH
Confidence 8999999874 2222211 122544 578999999999998863 66777787776543
No 282
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.96 E-value=0.0033 Score=66.25 Aligned_cols=259 Identities=16% Similarity=0.150 Sum_probs=138.5
Q ss_pred EEEEecceEEEEEc-----------cCeEEEeecCCceeEEEEEEeChH-hhhhcCcccEEEEcCCccEEEEEe--cCcE
Q 003356 25 IYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSE-SVQREGENLQAVWSPDTKLIAVVT--SSLY 90 (827)
Q Consensus 25 v~fspdg~lla~~~-----------~~~v~IW~~~~~~~~l~~~~r~~~-s~~~~G~~~~v~wSPDg~~lav~t--~dg~ 90 (827)
+..||||+.+.+++ .+-|.+||. +...+.+...-..+ ....--.....++|.||+++++.. -...
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~-~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDT-QTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEET-TTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEec-CcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 45899999877652 136999999 58777777765543 111111122467888888777643 2234
Q ss_pred EEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeec
Q 003356 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELV 170 (827)
Q Consensus 91 l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~ 170 (827)
|-+.|++..+ +...+...++ +.-.-..+..+..-|.||.+..+..+.+-.....
T Consensus 120 VtVVDl~~~k---------------------vv~ei~~PGC---~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~-- 173 (342)
T PF06433_consen 120 VTVVDLAAKK---------------------VVGEIDTPGC---WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK-- 173 (342)
T ss_dssp EEEEETTTTE---------------------EEEEEEGTSE---EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE--
T ss_pred EEEEECCCCc---------------------eeeeecCCCE---EEEEecCCCceEEEecCCceEEEEECCCCCEeEe--
Confidence 5555543221 1111222222 2111122356778889999988888754322211
Q ss_pred ccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccc---ccee
Q 003356 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK---LAEF 247 (827)
Q Consensus 171 ~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~---~~~~ 247 (827)
+.-.|..+.+. -+..-.+....+...+.+-+|+++.+......++ -|..
T Consensus 174 ---------~t~~F~~~~dp-------------------~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 174 ---------STKVFDPDDDP-------------------LFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp ---------EEEESSTTTS--------------------B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred ---------eccccCCCCcc-------------------cccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 11123222221 1112234444456677788888887666554443 3443
Q ss_pred ecc----ceecCCCCcEEEEEcCCCCEEEEEe--------cCC--eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEE
Q 003356 248 IKI----DKELGSGDAVCASIAPEQQILAVGT--------RRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (827)
Q Consensus 248 ~~~----~~~~~h~~~v~va~sp~~~lla~g~--------~dg--~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l 313 (827)
.+. ..|.. .+.--+++++....|.+-- +|+ .|-+||+.+ .+.+.++.. ..++.+|
T Consensus 226 ~t~~e~~~~WrP-GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l---------~~~~~Si 294 (342)
T PF06433_consen 226 LTDAEKADGWRP-GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL---------EHPIDSI 294 (342)
T ss_dssp S-HHHHHTTEEE--SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE---------EEEESEE
T ss_pred cCccccccCcCC-cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC---------CCccceE
Confidence 221 12211 1112267777655554432 233 466667766 677777776 3468899
Q ss_pred EECCCCC-EEEEE-EcCCcEEEEeccCCeeEEEecccc
Q 003356 314 AWTPDNS-AFAVG-WKSRGLTVWSVSGCRLMSTIRQIS 349 (827)
Q Consensus 314 ~~spDg~-~Lasg-~~Dg~v~vWs~~~~~l~~tl~~~~ 349 (827)
+.|.|.+ +|.+. ..++.+.+||..+++++.++.+-+
T Consensus 295 ~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 295 AVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp EEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred EEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 9999888 55444 457899999999999999987753
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.94 E-value=2e-05 Score=87.51 Aligned_cols=200 Identities=11% Similarity=0.029 Sum_probs=128.3
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee-----cCCCCcEEEEEcCCCCEEEEEecCCe
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVCASIAPEQQILAVGTRRGV 279 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~va~sp~~~lla~g~~dg~ 279 (827)
.++...|++|.|.+.-. .++++++-|..+..|+...+..- .-|..+..|+||-...-+...+....
T Consensus 111 hghsraitd~n~~~q~p---------dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHP---------DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred ecCccceeccccCCCCC---------cceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 34566777877666432 23455555666677877655432 23566667999976555555566778
Q ss_pred EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC-CCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeee
Q 003356 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (827)
Q Consensus 280 v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD-g~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~ 358 (827)
|++||...++..+..+++ |...|..++|..- -..+.+.+.|++|+.||.........-..-....+.-.++
T Consensus 182 i~vwd~r~gs~pl~s~K~--------~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKG--------HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred eEEEeccCCCcceEEecc--------cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence 999999986677888888 8999999998763 3467788899999999986433221111111234555566
Q ss_pred cCCCCCCccceeecc----------eeEEEccC-CceEEEEecCCcceEEEEec---c----------eeeeecccCCCe
Q 003356 359 KPNQDCKYEPLMSGT----------SMMQWDEY-GYRLYAIEEGSSERVLIFSF---G----------KCCLNRGVSGMT 414 (827)
Q Consensus 359 sp~~~~~~~~l~sg~----------~i~~W~~~-~~~l~~~~~~~~~~v~~~~~---~----------~~~~s~~~d~~~ 414 (827)
-|.++.-.-..+.|. ....|+.. ..+.+..+.||++.|..|-+ + -.++|-+.|.++
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 666631111111121 23456553 34567788899988866655 1 147899999999
Q ss_pred eeeEEEE
Q 003356 415 YARQVIY 421 (827)
Q Consensus 415 ~~w~~~~ 421 (827)
++|.+..
T Consensus 334 rlWpI~~ 340 (1081)
T KOG0309|consen 334 RLWPIDS 340 (1081)
T ss_pred EeeeccH
Confidence 9998754
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.91 E-value=5.2e-05 Score=92.00 Aligned_cols=189 Identities=15% Similarity=0.160 Sum_probs=121.3
Q ss_pred cceEEEeecCC--CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcc
Q 003356 132 GLSVSNIVSDN--KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISS 209 (827)
Q Consensus 132 ~~~v~~~~~d~--~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 209 (827)
...|.++.... -+.+.|+.||.++.+.|....... ..+ ..+. +
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~-------------------------~~r---------t~g~-s 2252 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVV-------------------------CFR---------TAGN-S 2252 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEE-------------------------Eee---------ccCc-c
Confidence 34566665444 578889999999999886332110 000 0111 4
Q ss_pred cEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccc--eecCCCCcEE-EEEcCCCCEEEEEe---cCCeEEEE
Q 003356 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIAPEQQILAVGT---RRGVVELY 283 (827)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~-va~sp~~~lla~g~---~dg~v~vw 283 (827)
.++.+.|+..++.+.+..-||.+ .+|+..... .++.|..+.. ..|=. .++|+++ .++.+.+|
T Consensus 2253 ~vtr~~f~~qGnk~~i~d~dg~l----------~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lw 2320 (2439)
T KOG1064|consen 2253 RVTRSRFNHQGNKFGIVDGDGDL----------SLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLW 2320 (2439)
T ss_pred hhhhhhhcccCCceeeeccCCce----------eecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccch
Confidence 45555555555555555555544 445543111 1256777766 55532 6777764 46799999
Q ss_pred EcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCC
Q 003356 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (827)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~ 363 (827)
|.--.......-.. |.+.++++++-|.-+.|++|+++|.|++||+.-.++.++++.- . ..
T Consensus 2321 Dtl~~~~~s~v~~~--------H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~----------~-~~- 2380 (2439)
T KOG1064|consen 2321 DTLLPPMNSLVHTC--------HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQAL----------D-TR- 2380 (2439)
T ss_pred hcccCcccceeeee--------cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhh----------h-hh-
Confidence 97542222211134 9999999999999999999999999999999988877766531 1 11
Q ss_pred CCccceeecc---eeEEEccCCceEEEEec
Q 003356 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (827)
Q Consensus 364 ~~~~~l~sg~---~i~~W~~~~~~l~~~~~ 390 (827)
+.+.+|+ .+++|...+..++....
T Consensus 2381 ---~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2381 ---EYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ---heeeccCcccceEEEEccccchhhcCc
Confidence 5666665 89999998887776653
No 285
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.89 E-value=3.4e-05 Score=54.50 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=33.3
Q ss_pred eceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEE
Q 003356 444 LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (827)
Q Consensus 444 ~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd 479 (827)
+..++.+|..+|.+++|+|++++|++|+.|+.+ +||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356788999999999999999999999999999 997
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.86 E-value=7.1e-05 Score=90.85 Aligned_cols=182 Identities=9% Similarity=0.140 Sum_probs=122.3
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 003356 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 261 ~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~ 340 (827)
|+.=+|...+-.+|+.||.|++|.... +..+.+++.. -+..|+.+.|+..|.....+..||.+.+|.+. .+
T Consensus 2213 r~~sHp~~~~Yltgs~dgsv~~~~w~~-~~~v~~~rt~-------g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2213 RMTSHPSDPYYLTGSQDGSVRMFEWGH-GQQVVCFRTA-------GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred eecCCCCCceEEecCCCceEEEEeccC-CCeEEEeecc-------CcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 477788889999999999999999987 6666666541 34789999999999999999999999999987 44
Q ss_pred eEEEeccccccceeeeeecCCCCCCccceeecceeEEEccC-CceEEEEecCCcceE--EEEec-ceeeeecccCCCeee
Q 003356 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEY-GYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYA 416 (827)
Q Consensus 341 l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~-~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~ 416 (827)
.+.+-+-| ....+..+|-.....+...--.+..+..||.- ....+.+...|.+.. .++.+ ...+++|+.+|.+++
T Consensus 2284 ~~~s~qch-nk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2284 PYTSWQCH-NKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred ceeccccC-CccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence 45444444 22233333321110000000011267788852 222223334555554 55555 667899999999999
Q ss_pred eEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 417 w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
||+.+... -|.++. +. ...++.+|+.+|.+ ||++..
T Consensus 2363 ~D~rqrql-------------------------~h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2363 FDIRQRQL-------------------------RHTFQA----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred eehHHHHH-------------------------HHHhhh----hh-hhheeeccCcccceEEEEccc
Confidence 99876544 233443 34 56789999999999 999865
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.86 E-value=0.0017 Score=73.17 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=44.3
Q ss_pred EEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEE---cCCc-cEEEEEecCcEEEEEEEEecC
Q 003356 33 LLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW---SPDT-KLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 33 lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~w---SPDg-~~lav~t~dg~l~l~~v~~~~ 100 (827)
++|++ -.++|.|||+. .+..++++..+.+++ .+++| .+|+ ..|++.+...+|.+|+..++.
T Consensus 81 liAsaD~~GrIil~d~~-~~s~~~~l~~~~~~~------qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~ 146 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFV-LASVINWLSHSNDSV------QDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE 146 (1062)
T ss_pred eEEeccccCcEEEEEeh-hhhhhhhhcCCCcch------hheeeeeccCcchheeEEecCCcEEEEEEccCCc
Confidence 34555 35799999995 777777776555544 56665 5677 578888888999999987654
No 288
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.85 E-value=0.0066 Score=67.83 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=50.7
Q ss_pred ceEEEEEecceEEEEEccC------------eEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCc
Q 003356 22 QQIIYFKVNNGLLLIASPC------------HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSL 89 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~~~------------~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg 89 (827)
...++.+|.|..+|+..+. .|.||+.. +.++.... +.. |.+.++.|+.+ ..|++.+.||
T Consensus 31 ~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s--G~ll~~i~-----w~~-~~iv~~~wt~~-e~LvvV~~dG 101 (410)
T PF04841_consen 31 DYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS--GKLLSSIP-----WDS-GRIVGMGWTDD-EELVVVQSDG 101 (410)
T ss_pred ceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC--CCEeEEEE-----ECC-CCEEEEEECCC-CeEEEEEcCC
Confidence 4567888988888888655 68999884 55666543 222 88899999986 5556667899
Q ss_pred EEEEEEEE
Q 003356 90 YLHIFKVQ 97 (827)
Q Consensus 90 ~l~l~~v~ 97 (827)
.+++|++.
T Consensus 102 ~v~vy~~~ 109 (410)
T PF04841_consen 102 TVRVYDLF 109 (410)
T ss_pred EEEEEeCC
Confidence 99999985
No 289
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.80 E-value=0.00062 Score=69.86 Aligned_cols=225 Identities=12% Similarity=0.107 Sum_probs=145.8
Q ss_pred EEEeCCcEEEEeeccCccccceeec-cceecC--C--CCcE-EEEEcCCCCEEEEEecCCeEEEEEcCCCCc---ceEEE
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIK-IDKELG--S--GDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS---LIRTV 295 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~-~~~~~~--h--~~~v-~va~sp~~~lla~g~~dg~v~vw~~~~~~~---~~~~l 295 (827)
..-|-..-+++.+.|.++++|-..+ ++.|+. | ..+. +.+++++.+.|.+|-.+|++.-+.+...-. ..+..
T Consensus 31 ~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~ 110 (404)
T KOG1409|consen 31 ILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDY 110 (404)
T ss_pred eeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhh
Confidence 3444445566667788888886543 333321 2 2333 489999999999999999999888765211 22222
Q ss_pred EeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc--cccc---ceeeeeecCCCCCCcccee
Q 003356 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ--ISLS---SISSPIVKPNQDCKYEPLM 370 (827)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~--~~~~---~v~s~~~sp~~~~~~~~l~ 370 (827)
.. |.+.|..+-|+-.-..+++.+.|..+.---.+.+.-+....- -... .+. .+| +|+- .
T Consensus 111 ~~--------h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-~~f--vGd~-----~ 174 (404)
T KOG1409|consen 111 LA--------HQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL-YAF--VGDH-----S 174 (404)
T ss_pred hh--------hhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE-EEE--eccc-----c
Confidence 23 999999999999999999999987764333333321110000 0000 000 111 1100 0
Q ss_pred ecceeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeecee
Q 003356 371 SGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (827)
Q Consensus 371 sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~ 447 (827)
..++..--...+-.++....+|.+.+.++.+ .+.+.+|..|..+..|++.-.... ...
T Consensus 175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-------------------~~e 235 (404)
T KOG1409|consen 175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-------------------AYE 235 (404)
T ss_pred cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-------------------eee
Confidence 0014444555667778888899988877776 567788889999999997554442 234
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 448 ~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
..+|+..|+.+..-+--+.+.+++.||.+ +||++-.+
T Consensus 236 l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 236 LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 55788889888888888999999999999 99986554
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.74 E-value=0.0032 Score=70.56 Aligned_cols=91 Identities=10% Similarity=0.074 Sum_probs=56.9
Q ss_pred EEEEEcCCCCE-EEEEecC---CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEE-EcC--CcEE
Q 003356 260 VCASIAPEQQI-LAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKS--RGLT 332 (827)
Q Consensus 260 v~va~sp~~~l-la~g~~d---g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg-~~D--g~v~ 332 (827)
+.-.|+|||+. ++..+.+ ..|.++|+.+ ++. +.+.. ..+.+...+|||||+.|+.. +.+ ..|.
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~-~~lt~--------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKK-EKIAS--------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcE-EEEec--------CCCcEEeeEECCCCCEEEEEEccCCCcEEE
Confidence 34899999984 6654443 4688888865 433 33332 35566778899999877643 333 3577
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 333 vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
++++.++.. ..+..+ ........|+||+
T Consensus 261 ~~dl~~g~~-~~LT~~-~~~d~~p~~SPDG 288 (419)
T PRK04043 261 LYDTNTKTL-TQITNY-PGIDVNGNFVEDD 288 (419)
T ss_pred EEECCCCcE-EEcccC-CCccCccEECCCC
Confidence 778777753 333332 1123456789988
No 291
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.71 E-value=0.0011 Score=66.88 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=69.6
Q ss_pred cEEEEeeccCccccceeecccee-----cCCCCcEE-EEEc-CCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCC
Q 003356 231 QLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIA-PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (827)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~-va~s-p~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~ 303 (827)
.++.++++|+.+.-||..-+..+ +-|...|| +.=| |+..+||+|+.|-.|++||.+..++++..-.
T Consensus 179 nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~------- 251 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK------- 251 (339)
T ss_pred ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-------
Confidence 56667777777777887744333 34566666 5555 4678999999999999999986556554332
Q ss_pred CCCCCCeEEEEECCC--CCEEEEEEcCCcEEEEeccCCe
Q 003356 304 MDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 304 ~~h~~~V~~l~~spD--g~~Lasg~~Dg~v~vWs~~~~~ 340 (827)
-.|.|+-+.++|- +.+||++-. ++.+|-+...+.
T Consensus 252 --v~GGVWRi~~~p~~~~~lL~~CMh-~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 252 --VGGGVWRIKHHPEIFHRLLAACMH-NGAKILDSSDKV 287 (339)
T ss_pred --cccceEEEEecchhhhHHHHHHHh-cCceEEEecccc
Confidence 3589999999994 344555444 678888776543
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.67 E-value=0.013 Score=61.10 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=44.4
Q ss_pred EEEcCCCCEEEEEec-----CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEE
Q 003356 262 ASIAPEQQILAVGTR-----RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 262 va~sp~~~lla~g~~-----dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
..||+||++|.+.-. .|.|-|||+...-+.+..+.. |.-.-..+.+.|||+.|+++- |+|.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s--------~GIGPHel~l~pDG~tLvVAN--GGI~ 121 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS--------HGIGPHELLLMPDGETLVVAN--GGIE 121 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC--------CCcChhhEEEcCCCCEEEEEc--CCCc
Confidence 689999999998644 478999999842455555554 433446788999999888874 4553
No 293
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.66 E-value=0.00071 Score=74.82 Aligned_cols=76 Identities=22% Similarity=0.438 Sum_probs=61.3
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 257 ~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
+.++|+++||+.+.++.||.||+|.+||... + .....+ +.-..+.++|+|||..+++|++.|.+.+||+
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~-~t~~~k---------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTR-G-VTLLAK---------AEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCC-C-eeeeee---------ecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 4566799999999999999999999999865 2 222222 3445789999999999999999999999999
Q ss_pred cCCeeEE
Q 003356 337 SGCRLMS 343 (827)
Q Consensus 337 ~~~~l~~ 343 (827)
.-+.+..
T Consensus 329 ALspi~~ 335 (545)
T PF11768_consen 329 ALSPIKM 335 (545)
T ss_pred ecCccce
Confidence 7655433
No 294
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.63 E-value=0.011 Score=65.64 Aligned_cols=141 Identities=11% Similarity=0.026 Sum_probs=67.1
Q ss_pred CEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC--CCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 269 ~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
..+..+..+|.+..+|..+ ++.+-...... +...........+.-+| ++..+.++..+|.+..||..+++......
T Consensus 191 ~~v~~~~~~g~v~ald~~t-G~~~W~~~~~~-~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQT-GQPLWEQRVAL-PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred CEEEEECCCCEEEEEEccC-CCEeeeecccc-CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence 4677888899999999877 54432221100 00000000011111112 34567777778999999998887665543
Q ss_pred cccccceeeeeecCCCCCCccceeec--ceeEEEccCCceEEEEecCCcceEE-EEe-cceeeeecccCCCeeeeEE
Q 003356 347 QISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGSSERVL-IFS-FGKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 347 ~~~~~~v~s~~~sp~~~~~~~~l~sg--~~i~~W~~~~~~l~~~~~~~~~~v~-~~~-~~~~~~s~~~d~~~~~w~~ 419 (827)
.. ....+... ++ ..++.. ..+..++..+++.+-....-..... ... .+..+..++.++.+..++.
T Consensus 269 ~~---~~~~p~~~-~~----~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 269 AS---SYQGPAVD-DN----RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred cC---CccCceEe-CC----EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEEC
Confidence 21 11112211 11 222222 2566777766654322111111111 101 1445556666776666553
No 295
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.55 E-value=0.014 Score=72.91 Aligned_cols=212 Identities=10% Similarity=0.088 Sum_probs=109.0
Q ss_pred cEEEEEcCCCCEEEEEe-cCCeEEEEEcCCCCcceEEEEeec-CC--CCCC-----C-CCCeEEEEECC-CCCEEEEEEc
Q 003356 259 AVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYD-WG--YSMD-----D-TGPVSCIAWTP-DNSAFAVGWK 327 (827)
Q Consensus 259 ~v~va~sp~~~lla~g~-~dg~v~vw~~~~~~~~~~~l~~~~-~~--~~~~-----h-~~~V~~l~~sp-Dg~~Lasg~~ 327 (827)
+..+++++++..|.++. .++.|+++|..+ ..+.++.+.- .+ +..+ . -..-..++++| +|...++.+.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 34489999888666554 457899998765 3344443310 00 0000 0 11235799999 5667777788
Q ss_pred CCcEEEEeccCCeeEEEecccc--------------ccceeeeeecCCCCCCcc-ceeecc---eeEEEccCCceEEEEe
Q 003356 328 SRGLTVWSVSGCRLMSTIRQIS--------------LSSISSPIVKPNQDCKYE-PLMSGT---SMMQWDEYGYRLYAIE 389 (827)
Q Consensus 328 Dg~v~vWs~~~~~l~~tl~~~~--------------~~~v~s~~~sp~~~~~~~-~l~sg~---~i~~W~~~~~~l~~~~ 389 (827)
++.|++|+..++... ++.+.+ ....+.++++|++ . .+++.. .+..|+..++......
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG----~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDL----KELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCC----CEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 899999999776542 222111 0123457778876 4 333322 7788887655432111
Q ss_pred cCCc-------------c----------eEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeec
Q 003356 390 EGSS-------------E----------RVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (827)
Q Consensus 390 ~~~~-------------~----------~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p 445 (827)
.+.. + .=++++. ++.+++-..++.++.|+...+.. ....+....... ..
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v--~tiaG~G~~G~~--dG--- 851 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV--TTLAGTGKAGFK--DG--- 851 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE--EEEeccCCcCCC--CC---
Confidence 1100 0 0012222 33334444444444444321111 000000000000 00
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 446 ~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
....+.-.....++++++|+.+++-+.++.| +||+.+++
T Consensus 852 ~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 852 KALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred cccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 0001111235689999999988888888999 99998875
No 296
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00031 Score=77.61 Aligned_cols=73 Identities=21% Similarity=0.374 Sum_probs=60.9
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeE-EEEECCCCCEEEEEEcCCcEEEEeccCC
Q 003356 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 261 ~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~-~l~~spDg~~Lasg~~Dg~v~vWs~~~~ 339 (827)
.+.|||.-.+||.+..+|.|.++.+. .+.+-++.. |...|+ +++|.|||+.||+|..||+|++-|++.+
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~--------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPI--------PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEec--cceeEeccC--------CCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 38999999999999999999998876 344445554 555566 9999999999999999999999999887
Q ss_pred eeEE
Q 003356 340 RLMS 343 (827)
Q Consensus 340 ~l~~ 343 (827)
..+.
T Consensus 95 ~~l~ 98 (665)
T KOG4640|consen 95 GRLV 98 (665)
T ss_pred Ccee
Confidence 6553
No 297
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.0032 Score=70.78 Aligned_cols=79 Identities=14% Similarity=0.249 Sum_probs=59.7
Q ss_pred CCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 003356 257 GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (827)
Q Consensus 257 ~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs 335 (827)
...++ ..+|++..++|.|++.|.|.++.+.. ........... ....|...|++++||+||..+.+|...|+|..-.
T Consensus 76 ~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t~--~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~ 152 (726)
T KOG3621|consen 76 TGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVTP--CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE 152 (726)
T ss_pred cceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceeecc--ccccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence 44566 89999999999999999999998876 32211111000 0112788999999999999999999999998887
Q ss_pred ccC
Q 003356 336 VSG 338 (827)
Q Consensus 336 ~~~ 338 (827)
+..
T Consensus 153 L~s 155 (726)
T KOG3621|consen 153 LDS 155 (726)
T ss_pred ech
Confidence 765
No 298
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.50 E-value=0.047 Score=60.63 Aligned_cols=248 Identities=19% Similarity=0.164 Sum_probs=120.8
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC--CCCEEEEEEcCCcEEEEeccCCeeEEE
Q 003356 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMST 344 (827)
Q Consensus 267 ~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--Dg~~Lasg~~Dg~v~vWs~~~~~l~~t 344 (827)
++..+.+++.||.+..+|..+ ++.+-.... .+.+. -+| ++..+..+..|+.+..||..+++.+.+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~---------~~~~~---~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~ 170 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAED-GKELWRAKL---------SSEVL---SPPLVANGLVVVRTNDGRLTALDAATGERLWT 170 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCC-CcEeeeecc---------Cceee---cCCEEECCEEEEECCCCeEEEEEcCCCceeeE
Confidence 567788899999999999887 655443322 12222 122 344666677789999999998887766
Q ss_pred ecccccc----ceeeeeecCCCCCCccceeec--ceeEEEccCCceE-EEEecCCc------ceEEEE--ec---ceeee
Q 003356 345 IRQISLS----SISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRL-YAIEEGSS------ERVLIF--SF---GKCCL 406 (827)
Q Consensus 345 l~~~~~~----~v~s~~~sp~~~~~~~~l~sg--~~i~~W~~~~~~l-~~~~~~~~------~~v~~~--~~---~~~~~ 406 (827)
....... ...++... ++ ..++.. ..+..++..+++. |....... .++..+ ++ +..+.
T Consensus 171 ~~~~~~~~~~~~~~sp~~~-~~----~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy 245 (377)
T TIGR03300 171 YSRVTPALTLRGSASPVIA-DG----GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY 245 (377)
T ss_pred EccCCCceeecCCCCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence 5432110 00111111 11 112111 1455566555443 22110000 000000 00 22222
Q ss_pred ecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe-
Q 003356 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK- 484 (827)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~- 484 (827)
.++.++.+..++...+ ...|..- .... .....++.++++++.+|.+ .+|..+|+
T Consensus 246 ~~~~~g~l~a~d~~tG-------------~~~W~~~-----~~~~------~~p~~~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 246 AVSYQGRVAALDLRSG-------------RVLWKRD-----ASSY------QGPAVDDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EEEcCCEEEEEECCCC-------------cEEEeec-----cCCc------cCceEeCCEEEEECCCCeEEEEECCCCcE
Confidence 3333343333332221 2345331 0011 1122356788888899999 99998885
Q ss_pred -EEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEecCCccEEEE--ccCCEEEEEEc
Q 003356 485 -WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD--VYEDYILVTYR 561 (827)
Q Consensus 485 -w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~~~~~~l~--~~~~~llV~~~ 561 (827)
|+.-.... . ......-.++.+++++ ....|.+++.. ...++.+.+++..++..+ ..++.+.|.+.
T Consensus 302 ~W~~~~~~~--~--~~ssp~i~g~~l~~~~-----~~G~l~~~d~~---tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 302 LWKNDELKY--R--QLTAPAVVGGYLVVGD-----FEGYLHWLSRE---DGSFVARLKTDGSGIASPPVVVGDGLLVQTR 369 (377)
T ss_pred EEccccccC--C--ccccCEEECCEEEEEe-----CCCEEEEEECC---CCCEEEEEEcCCCccccCCEEECCEEEEEeC
Confidence 54311000 0 1112223456666652 22356666553 334555555544333222 24466777788
Q ss_pred CceEEEE
Q 003356 562 PFDVHIF 568 (827)
Q Consensus 562 ~~~i~l~ 568 (827)
|+.+..|
T Consensus 370 dG~l~~~ 376 (377)
T TIGR03300 370 DGDLYAF 376 (377)
T ss_pred CceEEEe
Confidence 8887766
No 299
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.47 E-value=0.065 Score=59.92 Aligned_cols=70 Identities=24% Similarity=0.322 Sum_probs=45.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe-EEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeC
Q 003356 451 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK-WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (827)
Q Consensus 451 ~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~-w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~ 528 (827)
..+++..+++||+|+++|.-..+|.+ +.+..-.+ ...+... .......|.|.++-.++..+. .+|.++..
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~---~~~~p~~~~WCG~dav~l~~~-----~~l~lvg~ 286 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD---SKSPPKQMAWCGNDAVVLSWE-----DELLLVGP 286 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC---cCCCCcEEEEECCCcEEEEeC-----CEEEEECC
Confidence 34689999999999999999999998 77654332 1111111 111244799999866655442 45666654
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.46 E-value=0.0013 Score=65.20 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=60.2
Q ss_pred cEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEe
Q 003356 259 AVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWS 335 (827)
Q Consensus 259 ~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs 335 (827)
++. ++-+| +..++++|+.||.+-+||++...-+...++. |..+++-+-|+| ++..|+++++||.+--||
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a--------hk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA--------HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH--------hhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 354 77777 4668889999999999999873333334555 999999999999 789999999999999999
Q ss_pred ccCCe
Q 003356 336 VSGCR 340 (827)
Q Consensus 336 ~~~~~ 340 (827)
..+.-
T Consensus 253 as~~~ 257 (319)
T KOG4714|consen 253 ASTTF 257 (319)
T ss_pred CCCce
Confidence 98743
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.45 E-value=0.0073 Score=60.19 Aligned_cols=190 Identities=13% Similarity=0.031 Sum_probs=113.7
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCC-EEEEEEcCCcEEEEeccCCeeEEEe
Q 003356 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTI 345 (827)
Q Consensus 267 ~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~-~Lasg~~Dg~v~vWs~~~~~l~~tl 345 (827)
+-.+||.|++-|...+|...+...+.+.... |...|+-+.=--|.+ -+..++.|.++++.++.++..-..+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~--------snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~ 154 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDV--------SNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV 154 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecc--------cccchhhhhhhcccccceeeccCCcceeEEEEecCccccee
Confidence 3457899999999999998864455544433 444443332222322 4667788899999999877654433
Q ss_pred ccccccceeeeeecCCCCCCccceeecc---eeEEEcc--CCceEEEEec-CCcceEE--EEec-ceeeeecccCCCeee
Q 003356 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE--YGYRLYAIEE-GSSERVL--IFSF-GKCCLNRGVSGMTYA 416 (827)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~--~~~~l~~~~~-~~~~~v~--~~~~-~~~~~s~~~d~~~~~ 416 (827)
... .-.+.++++++++ ..+++-. .+..+.+ +++.+..+.. ...+.=+ .++- ...++.+..|+++.+
T Consensus 155 h~~-~~~~ns~~~snd~----~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 155 HNQ-NLTQNSLHYSNDP----SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI 229 (344)
T ss_pred ecc-ccceeeeEEcCCC----ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence 322 1237788899887 4333222 4555544 3444444222 2222223 3333 567889999999999
Q ss_pred eEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCC--EEEEEeCCceE-EEEcCCCe
Q 003356 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM--FLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 417 w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~--~lavag~dg~i-iwd~~t~~ 484 (827)
||+........ ..-.+--.|++.+|.+.||+-|. .|...-.-+.+ +-|+++++
T Consensus 230 ~DVR~~~tpm~---------------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 230 YDVRNMATPMA---------------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred EEecccccchh---------------hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 99977554110 00112235899999999998653 34444444555 77776654
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.45 E-value=0.00066 Score=68.52 Aligned_cols=264 Identities=13% Similarity=0.086 Sum_probs=133.3
Q ss_pred hhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCc--eee---cCCCCCCCceeeeEeeEeecccccccccceEEEe
Q 003356 64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK--SIQ---IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI 138 (827)
Q Consensus 64 ~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~--~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~ 138 (827)
..+...+++|.|---|.++|+|...|.|.+|.-+.... ... ..+++.+--.+.+++. +++ ...|.-+
T Consensus 23 ~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSlei--eEK------in~I~w~ 94 (460)
T COG5170 23 STEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEI--EEK------INAIEWF 94 (460)
T ss_pred ccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccH--HHH------hhheeee
Confidence 34456678999999999999998889999997654331 111 2233333233343322 222 2223333
Q ss_pred ecCC-CeEEEEecCCcEEEEecCCccCcceeecccCCCCccccee-cccCCCCccccccCCceeccccCCCcccEEEEE-
Q 003356 139 VSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS-HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE- 215 (827)
Q Consensus 139 ~~d~-~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~- 215 (827)
...+ ..+++.+.|.+|++|..-.....-. +...+... .+..++.+.+..+ ..--.+..+. .++...
T Consensus 95 ~~t~r~hFLlstNdktiKlWKiyeknlk~v-------a~nnls~~~~~~~~g~~~s~~~---l~lprls~hd-~iiaa~p 163 (460)
T COG5170 95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVV-------AENNLSDSFHSPMGGPLTSTKE---LLLPRLSEHD-EIIAAKP 163 (460)
T ss_pred cCCCcceEEEecCCceeeeeeeecccchhh-------hccccccccccccCCCcCCHHH---hhcccccccc-eEEEecc
Confidence 3333 6789999999999865432211000 00001100 0011110000000 0000001111 111110
Q ss_pred ---Ec---CCcceEEEEEeCCcEEEEeeccCccccceeecccee------cCC-----CCcEE-EEEcCCC-CEEEEEec
Q 003356 216 ---LC---LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGS-----GDAVC-ASIAPEQ-QILAVGTR 276 (827)
Q Consensus 216 ---~~---~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~------~~h-----~~~v~-va~sp~~-~lla~g~~ 276 (827)
|. +---..+.+.+|.+.++ ++++-.+.+|+......- +.| ...+. ..|+|.. ..+--.+.
T Consensus 164 ~rvyaNaH~yhiNSiS~NsD~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 164 CRVYANAHPYHINSISFNSDKETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred ceeccccceeEeeeeeecCchheee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 10 00012345667777766 456667888986532210 222 12334 7888864 45555677
Q ss_pred CCeEEEEEcCCCCcce---E----EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC-CeeEEEeccc
Q 003356 277 RGVVELYDLAESASLI---R----TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQI 348 (827)
Q Consensus 277 dg~v~vw~~~~~~~~~---~----~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~-~~l~~tl~~~ 348 (827)
.|+|++-|++...-+. + ++.+.+..+-.+-...|..+.|+|+|+++++-.. .+|++||+.- ..++.|+.-|
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 8999999987421111 1 1111111111123556889999999999998776 7999999954 3355555433
No 303
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.0016 Score=70.38 Aligned_cols=174 Identities=12% Similarity=0.091 Sum_probs=111.3
Q ss_pred cccccceEEEee-cCC-CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccC
Q 003356 128 FAEKGLSVSNIV-SDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (827)
Q Consensus 128 ~~~~~~~v~~~~-~d~-~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~ 205 (827)
+.++...|.+++ .|+ +.++.+++|.+++.|+...+..+... . .......
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t-----------s------------------aCQfTY~ 781 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT-----------S------------------ACQFTYQ 781 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc-----------c------------------eeeeEhh
Confidence 456666666663 344 56888999999999877655433210 0 0001223
Q ss_pred CCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee------cCCCC--cEEEEEcCCCCE-EEEEec
Q 003356 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGD--AVCASIAPEQQI-LAVGTR 276 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~------~~h~~--~v~va~sp~~~l-la~g~~ 276 (827)
.++..|.++. +..|-+.++ +-|+.+.+||...+..+ ..|.. .+.+--|-+..+ +|.++.
T Consensus 782 aHkk~i~~ig----------fL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsa 849 (1034)
T KOG4190|consen 782 AHKKPIHDIG----------FLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSA 849 (1034)
T ss_pred hccCccccee----------eeeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccc
Confidence 4566676665 555666555 44667888987654432 12222 222222334444 444578
Q ss_pred CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 277 dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
..+|+++|... .+....++.-. .++..+-+++++..|.|+.+|+|-.+|.+.+-|..+|+.+.+.+
T Consensus 850 eSTVKl~DaRs-ce~~~E~kVcn---a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 850 ESTVKLFDARS-CEWTCELKVCN---APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred hhhheeeeccc-ccceeeEEecc---CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 89999999887 66665555421 12245678999999999999999999999999999998776554
No 304
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.38 E-value=0.0014 Score=68.81 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=62.3
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccC
Q 003356 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (827)
Q Consensus 305 ~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~ 381 (827)
+|-.-++.++||||+++|.++.+|..|||=.....-.+.++--+|+.-|+.++.-++ ..+++|+ +++.|+..
T Consensus 149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-----~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-----YLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-----ceeeecCCCCcEEEEecc
Confidence 389999999999999999999999999998876655555554333777888887666 4566665 88899988
Q ss_pred CceEEEEe
Q 003356 382 GYRLYAIE 389 (827)
Q Consensus 382 ~~~l~~~~ 389 (827)
+++++.+.
T Consensus 224 sgk~L~t~ 231 (390)
T KOG3914|consen 224 SGKLLDTC 231 (390)
T ss_pred cCCccccc
Confidence 88876544
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.0083 Score=68.40 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=95.7
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 003356 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 261 ~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~ 340 (827)
|+++ .++.+|.|+.+|.|++++.+. .. ++... |... ..+|.++|||+.||+|.|-++++.+
T Consensus 44 ~~av--~~~~~~~GtH~g~v~~~~~~~--~~-~~~~~--------~s~~------~~~Gey~asCS~DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 44 CCAV--HDKFFALGTHRGAVYLTTCQG--NP-KTNFD--------HSSS------ILEGEYVASCSDDGKVVIGSLFTDD 104 (846)
T ss_pred HHHh--hcceeeeccccceEEEEecCC--cc-ccccc--------cccc------ccCCceEEEecCCCcEEEeeccCCc
Confidence 4565 367899999999999998764 22 32222 4333 5689999999999999999999998
Q ss_pred eEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeee--E
Q 003356 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYAR--Q 418 (827)
Q Consensus 341 l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w--~ 418 (827)
..+++.-+ ..+.+++++|+-... . .+.+++|+..| +.+. .
T Consensus 105 ~~~~~df~--rpiksial~Pd~~~~--------~---------------------------sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 105 EITQYDFK--RPIKSIALHPDFSRQ--------Q---------------------------SKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred cceeEecC--CcceeEEeccchhhh--------h---------------------------hhheeecCcce-EEEehhh
Confidence 87776543 568888888872100 0 11122222222 1000 0
Q ss_pred EEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEcCCCeE
Q 003356 419 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKW 485 (827)
Q Consensus 419 ~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~~t~~w 485 (827)
.++..+ +-....-.++|.++.| .|.++|-++.+|+-+||+.+++-
T Consensus 147 wlgnk~--------------------~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~ 191 (846)
T KOG2066|consen 147 WLGNKD--------------------SVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQR 191 (846)
T ss_pred hhcCcc--------------------ceeeecCccceEEEEe--cCcEEEEecCCCcEEEeccccce
Confidence 011111 1123344678999999 57899999999988999998863
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.27 E-value=0.085 Score=63.24 Aligned_cols=214 Identities=19% Similarity=0.269 Sum_probs=121.1
Q ss_pred ccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcC--
Q 003356 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA-- 286 (827)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~-- 286 (827)
..|+++.|-...+..++++.+|.++++.... ..|..... --.+..+++||||.+++|..+.++++.+=+-+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et---~~~eivg~----vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPET---LELEIVGN----VDNGISAASWSPDEELLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccc---cceeeeee----ccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence 4689999998889999999999998873222 22322211 11334459999999999999998888763321
Q ss_pred --CC------------------CcceEEEEeecC---CC-CCC---------CCCCeEEEEECCCCCEEEEEE-----cC
Q 003356 287 --ES------------------ASLIRTVSLYDW---GY-SMD---------DTGPVSCIAWTPDNSAFAVGW-----KS 328 (827)
Q Consensus 287 --~~------------------~~~~~~l~~~~~---~~-~~~---------h~~~V~~l~~spDg~~Lasg~-----~D 328 (827)
.. ++....++++.- .. ... -...=++|+|--||+++|+.+ ..
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 00 000111221100 00 000 011124699999999999843 22
Q ss_pred CcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecC--CcceEEEEecceeee
Q 003356 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEG--SSERVLIFSFGKCCL 406 (827)
Q Consensus 329 g~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~--~~~~v~~~~~~~~~~ 406 (827)
+.++|||-.|. +-.+- ++...-...+.|.+. +.++.+.+. .++.|.-|...
T Consensus 222 RkirV~drEg~-Lns~s---------------------e~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErN---- 274 (1265)
T KOG1920|consen 222 RKIRVYDREGA-LNSTS---------------------EPVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERN---- 274 (1265)
T ss_pred eeEEEecccch-hhccc---------------------CcccccccceeecCC-CCeEeeeeecCCCCcEEEEecC----
Confidence 78999998843 22110 111111256678774 334433321 12223222210
Q ss_pred ecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEE---EeCCceE-EEEcCC
Q 003356 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAV---AGLHGLI-LYDIRQ 482 (827)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lav---ag~dg~i-iwd~~t 482 (827)
| +..++- ...+.....++..++|+.++..||+ ......+ +|-+..
T Consensus 275 -----G------L~hg~f--------------------~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 275 -----G------LRHGEF--------------------VLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred -----C------cccccc--------------------ccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 0 111111 1112223445889999999999999 6777778 999988
Q ss_pred CeEEe
Q 003356 483 KKWRV 487 (827)
Q Consensus 483 ~~w~~ 487 (827)
-.|.+
T Consensus 324 yhWYL 328 (1265)
T KOG1920|consen 324 YHWYL 328 (1265)
T ss_pred eEEEE
Confidence 88976
No 307
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.25 E-value=0.11 Score=56.92 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=47.5
Q ss_pred CceEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeCh-Hh---------h-hh-cCcccEEEEcCCccEEEEEec-
Q 003356 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDS-ES---------V-QR-EGENLQAVWSPDTKLIAVVTS- 87 (827)
Q Consensus 21 ~~~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~-~s---------~-~~-~G~~~~v~wSPDg~~lav~t~- 87 (827)
...-..+||||+.+|.+.++.|.+++.. .. ....+...- .. . ++ ++....+.|||||+.||....
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~-~~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLA-TG-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESST-TS-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccceeecCCCeeEEEecCceEEEECC-CC-CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 3455789999999999999999999873 33 222222211 00 1 23 677788999999999998664
Q ss_pred CcEEEEEEEE
Q 003356 88 SLYLHIFKVQ 97 (827)
Q Consensus 88 dg~l~l~~v~ 97 (827)
+..++.+.+.
T Consensus 122 ~~~v~~~~~~ 131 (353)
T PF00930_consen 122 EREVPEYPLP 131 (353)
T ss_dssp -TTS-EEEEE
T ss_pred CcCCceEEee
Confidence 4456666654
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.23 E-value=0.00075 Score=66.75 Aligned_cols=152 Identities=16% Similarity=0.096 Sum_probs=88.4
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe-eEEEeccccccceeeeeecCCCCCCccceeecc--------eeE
Q 003356 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--------SMM 376 (827)
Q Consensus 306 h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~-l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--------~i~ 376 (827)
|+++-.+=+.+--++.++.++.||.+.+.+...-. +.+.+...+.+.... .+-..+ +.+.++. ...
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~-~~~~~~----~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASR-KICRHG----NSILSGGCGNWNAQDNFY 162 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccccccc-ceeecc----cEEecCCcceEeecccee
Confidence 55544444555567889999999999999986521 111111110000000 000001 2222221 233
Q ss_pred EEccCCceEEEEecCCcceE--EEEec--ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeecee-eccC
Q 003356 377 QWDEYGYRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS-YISQ 451 (827)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~-~~~~ 451 (827)
.|+.+....+.........| .+-.+ ...++.|+.||.+-+|+..+... |.. |+.|
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------------------p~S~l~ah 222 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------------------PVSLLKAH 222 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------------hHHHHHHh
Confidence 44433322222211111223 22233 44567788899999999877755 554 5689
Q ss_pred CCcEEEEEEcCC-CCEEEEEeCCceE-EEEcCC
Q 003356 452 NWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 452 ~~~I~~va~Spd-G~~lavag~dg~i-iwd~~t 482 (827)
..+|+.+-|+|. +..|.++++||.+ +||..+
T Consensus 223 k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 223 KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999985 8899999999999 999876
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.033 Score=64.22 Aligned_cols=138 Identities=19% Similarity=0.309 Sum_probs=88.0
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCE-EEEEEcCCcEEEEe
Q 003356 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA-FAVGWKSRGLTVWS 335 (827)
Q Consensus 258 ~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~-Lasg~~Dg~v~vWs 335 (827)
.+++ ++++.+-+.+|+|-.||.|..+.-+ ..+.. +.+..++..-.++|+.+++..||+. ++++.. ..|.+++
T Consensus 126 ~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD----i~RDr-gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y~ 199 (933)
T KOG2114|consen 126 SPASSLAVSEDLKTIVCGFTNGLVICYKGD----ILRDR-GSRQDYSHRGKEPITGLALRSDGKSVLFVATT-EQVMLYS 199 (933)
T ss_pred CcceEEEEEccccEEEEEecCcEEEEEcCc----chhcc-ccceeeeccCCCCceeeEEecCCceeEEEEec-ceeEEEE
Confidence 4455 9999999999999999999987632 22111 1111122224679999999999997 555544 6899999
Q ss_pred ccCCe-eEEEeccccccceeeeeecCCCCCCccceeecc-eeEEEccCCceEEEEec-CCcceEEEEecceee
Q 003356 336 VSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE-GSSERVLIFSFGKCC 405 (827)
Q Consensus 336 ~~~~~-l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~-~~~~~v~~~~~~~~~ 405 (827)
+.++. ..+.+..+| .+.++..+++.. .+.+..++ -+-+++..+-..-.++. +++-.+..++++..+
T Consensus 200 l~gr~p~~~~ld~~G-~~lnCss~~~~t---~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L 268 (933)
T KOG2114|consen 200 LSGRTPSLKVLDNNG-ISLNCSSFSDGT---YQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLL 268 (933)
T ss_pred ecCCCcceeeeccCC-ccceeeecCCCC---ccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEEE
Confidence 98765 344455553 356666666554 13444444 66677776655544444 776666666665443
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.21 E-value=0.071 Score=55.23 Aligned_cols=90 Identities=14% Similarity=0.255 Sum_probs=60.9
Q ss_pred EEEcCCCCEEE-EEecCCeEEEEEcCCCCcce---EEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 262 ASIAPEQQILA-VGTRRGVVELYDLAESASLI---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 262 va~sp~~~lla-~g~~dg~v~vw~~~~~~~~~---~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
++|+|+++.|. +-+..+.|..|+++..+..+ +.+.. .. .-.+..-.+++..+|++.++.+..+.|.+++..
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~--~~---~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID--FP---GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE---S---SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEE--cC---CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 89999998665 55677899999987533312 22211 00 012347789999999999999988999999998
Q ss_pred CCeeEEEeccccccceeeeee
Q 003356 338 GCRLMSTIRQISLSSISSPIV 358 (827)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~ 358 (827)
|+++..+.-. ...+++++|
T Consensus 214 -G~~~~~i~~p-~~~~t~~~f 232 (246)
T PF08450_consen 214 -GKLLREIELP-VPRPTNCAF 232 (246)
T ss_dssp -SCEEEEEE-S-SSSEEEEEE
T ss_pred -ccEEEEEcCC-CCCEEEEEE
Confidence 5556655543 235677777
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.028 Score=59.32 Aligned_cols=75 Identities=13% Similarity=0.310 Sum_probs=61.6
Q ss_pred cCCCCcEE-EEEcCCCC-EEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCC-EEEEEEcCCc
Q 003356 254 LGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRG 330 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~-lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~-~Lasg~~Dg~ 330 (827)
.++...+. ++|||..+ ++..++.+.+|+|.|+.+ ...+..... | .++++++|.-|.. +|-.|-.+|.
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a--------~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIA--------Y-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheec--------c-CCceeeeeccCCcceeEEeccCce
Confidence 66788888 99999887 889999999999999987 444444444 4 7899999998765 6778888999
Q ss_pred EEEEeccC
Q 003356 331 LTVWSVSG 338 (827)
Q Consensus 331 v~vWs~~~ 338 (827)
|.|+|+..
T Consensus 260 VlvyD~R~ 267 (463)
T KOG1645|consen 260 VLVYDMRQ 267 (463)
T ss_pred EEEEEccC
Confidence 99999954
No 312
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.12 E-value=0.14 Score=55.73 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=79.5
Q ss_pred EEEEeCCcEEEEeeccCccccceeecccee--cCCCCcEEEEEcCCCCEEEEEecCCe---------------EEEEEcC
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGV---------------VELYDLA 286 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~va~sp~~~lla~g~~dg~---------------v~vw~~~ 286 (827)
+..+|.|+.++... ...+..|......++ .-|.+.-.+.|||.+.+|.+=+..+. +.+||+.
T Consensus 38 ~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~ 116 (561)
T COG5354 38 VSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA 116 (561)
T ss_pred eeecCcchheehhh-ccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc
Confidence 45778888777433 335667776644333 33555444999999999998765444 9999998
Q ss_pred CCCcceEEEEeecCCCCCCCCCCeE-EEEECCCCCEEEEEEcCCcEEEEeccCCee---EEEeccccccceeeeeecCCC
Q 003356 287 ESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~-~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l---~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+ +..+..+.... .+...+ -+.||-|.+++|=-.. ..+.|+++..+.. +..++ ...+....++|.+
T Consensus 117 s-g~iv~sf~~~~------q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~~~p~~~lr---~~gi~dFsisP~~ 185 (561)
T COG5354 117 S-GMIVFSFNGIS------QPYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIEEHPFKNLR---PVGILDFSISPEG 185 (561)
T ss_pred C-ceeEeeccccC------Ccccccceeeeeecchhhhhhcc-CeEEEEecCCccccCchhhcc---ccceeeEEecCCC
Confidence 8 77777776622 111134 6889998887765443 5789998733221 22222 1235556666664
No 313
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.08 E-value=0.0019 Score=66.43 Aligned_cols=116 Identities=9% Similarity=0.094 Sum_probs=83.1
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCC----CcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEec
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~----~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~ 336 (827)
..|.-.+.++..|+.+|.|.++|+... +.+.+.+. |...|+++.--. ++++|.+.+.+|+|++||.
T Consensus 258 lQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly---------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 258 LQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY---------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred HHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE---------cCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 566667899999999999999999862 12223332 889999998877 8899999999999999998
Q ss_pred cCCee---EEEeccccccceeeeeecCCCCC-Cccceeecc---eeEEEccCCceEEEEec
Q 003356 337 SGCRL---MSTIRQISLSSISSPIVKPNQDC-KYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (827)
Q Consensus 337 ~~~~l---~~tl~~~~~~~v~s~~~sp~~~~-~~~~l~sg~---~i~~W~~~~~~l~~~~~ 390 (827)
.--++ +.+..+| |+..+..|.+-- +...++++. -.++|..+.++++.+..
T Consensus 329 R~~K~~~~V~qYeGH----vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 329 RATKCKKSVMQYEGH----VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhhhcccceeeeecc----cccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 65555 7788887 333443333221 113333333 67889999998887764
No 314
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.97 E-value=0.29 Score=54.97 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=39.9
Q ss_pred cEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 259 ~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
+..+++||+|+.+++ +.||.-.+|.... .+... .|.-....|+++|+ +|+-...++|.++.-.
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~-~r~k~-------------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALA-WRNKA-------------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNF 97 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTT-TEEEE-------------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccC-Ccccc-------------cCceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence 445999999999999 6688888888443 22222 23447789999555 6666667889997443
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.87 E-value=0.28 Score=51.35 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=40.0
Q ss_pred EEEEcCCCCEEEEEe-cCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCc
Q 003356 261 CASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (827)
Q Consensus 261 ~va~sp~~~lla~g~-~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~ 330 (827)
.|++++++.++|+.| ..|.+.+||..+ ++.+..... ..+..++-.+++ ++++.+. |.
T Consensus 221 SIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l----------~D~cGva~~~~~-f~~ssG~-G~ 278 (305)
T PF07433_consen 221 SIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPL----------PDACGVAPTDDG-FLVSSGQ-GQ 278 (305)
T ss_pred EEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeecccc----------CceeeeeecCCc-eEEeCCC-cc
Confidence 389999999887665 567999999988 776665443 235677777777 5665554 44
No 316
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.85 E-value=0.033 Score=56.65 Aligned_cols=280 Identities=15% Similarity=0.161 Sum_probs=139.1
Q ss_pred EEEEEecceEEEEEc-cCeEEEeecCCceeEEEEE---------E---eChHhhhhcCcccEEEEcCCcc--EEEEEecC
Q 003356 24 IIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKY---------K---RDSESVQREGENLQAVWSPDTK--LIAVVTSS 88 (827)
Q Consensus 24 vv~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~---------~---r~~~s~~~~G~~~~v~wSPDg~--~lav~t~d 88 (827)
.|-|---|.++|++. .++|.++.-.+.. -+.+ + .-.+|++-...+..+.|-.|+. .+.+.|.|
T Consensus 31 aVefd~tg~YlatGDkgGRVvlfer~~s~--~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNd 108 (460)
T COG5170 31 AVEFDETGLYLATGDKGGRVVLFEREKSY--GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108 (460)
T ss_pred EEEeccccceEeecCCCceEEEeeccccc--ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCC
Confidence 366878899999985 4677777543211 1111 0 0112333233456777866654 57888899
Q ss_pred cEEEEEEEEecCce------eecCCCCCCC--------ceeeeEee------EeecccccccccceEEEeecCCC-eEEE
Q 003356 89 LYLHIFKVQITEKS------IQIGGKQPSG--------LFFIKISL------VLNEQLPFAEKGLSVSNIVSDNK-HMLL 147 (827)
Q Consensus 89 g~l~l~~v~~~~~~------~~~~~~~~~~--------~~~~~~~l------~~~~~~~~~~~~~~v~~~~~d~~-~llv 147 (827)
.+|++|.+-...-+ +..+.+.+.+ +.++.++- .-..++....+.-.+-+++...+ ..++
T Consensus 109 ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~l 188 (460)
T COG5170 109 KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLL 188 (460)
T ss_pred ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheee
Confidence 99999998543211 1111111111 11111100 00011111233334445554442 3444
Q ss_pred EecCCcEEEEecCCcc-Ccceee-cccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcce-EE
Q 003356 148 GLSDGSLYSISWKGEF-YGAFEL-VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL-LF 224 (827)
Q Consensus 148 ~t~dg~i~~~~w~~~~-~~~~~l-~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~~ 224 (827)
..++-.|.+ |..+. .+.+.+ ..+|+.-.- -..-|++.+|+|.++. +.
T Consensus 189 SaDdLrINL--Wnl~i~D~sFnIVDiKP~nmee----------------------------LteVItSaeFhp~~cn~fm 238 (460)
T COG5170 189 SADDLRINL--WNLEIIDGSFNIVDIKPHNMEE----------------------------LTEVITSAEFHPEMCNVFM 238 (460)
T ss_pred eccceeeee--ccccccCCceEEEeccCccHHH----------------------------HHHHHhhcccCHhHcceEE
Confidence 445544544 65443 233322 122222111 1123566678887753 33
Q ss_pred EEEeCCcEEEEeec-----cCccccce----eeccceecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEE
Q 003356 225 VLYSNGQLMSCSVS-----KKGLKLAE----FIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (827)
Q Consensus 225 ~~s~dG~~~~~~~~-----~~~~~~~~----~~~~~~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~ 294 (827)
.-++.|.+-+.... +...++.. .....-+.+....+. +.|++.|++|++-.. -+|++||+.....++++
T Consensus 239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikT 317 (460)
T COG5170 239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKT 317 (460)
T ss_pred EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCcee
Confidence 33444544432221 11111110 000000112234555 899999999987554 48999999875677777
Q ss_pred EEeecC-------CCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 295 VSLYDW-------GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 295 l~~~~~-------~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
+..+.- .|....--.-.-+.||-|.+.+.+|+..+..-++-+
T Consensus 318 i~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 318 IPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred echHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 754210 011111112245889999999999998887777754
No 317
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.72 E-value=0.0042 Score=42.13 Aligned_cols=30 Identities=30% Similarity=0.691 Sum_probs=28.6
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 003356 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (827)
Q Consensus 306 h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs 335 (827)
|...|.+++|.|++..+++++.|+.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 888999999999999999999999999996
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.67 E-value=1.1 Score=54.14 Aligned_cols=54 Identities=11% Similarity=0.074 Sum_probs=41.7
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 307 ~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
.+.|.++.|..|+..++.+..+|.|.+-|..+..... .+.-.+.|.+.+|+||+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--vg~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI--VGNVDNGISAASWSPDE 121 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee--eeeccCceEEEeecCCC
Confidence 3689999999999999999999999999887764322 22224568888888887
No 319
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.007 Score=67.29 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=69.8
Q ss_pred cEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcE-EEEEcCCCCEEEEEecCCeEEEEEcCCC
Q 003356 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES 288 (827)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~va~sp~~~lla~g~~dg~v~vw~~~~~ 288 (827)
.+.-++|+|.+..++..+.+|++++...+ --++|+...+. ...+ +++|.|||++||+|-.||+|++.|+.+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~-----~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~- 93 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPG-----ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK- 93 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCC-----CccceeeeecCCCCEEEEEecCCeEEEEEccC-
Confidence 47788999999999999999999887665 44677766431 2334 699999999999999999999999988
Q ss_pred CcceEEE-EeecCCCCCCCCCCeEEEEECC
Q 003356 289 ASLIRTV-SLYDWGYSMDDTGPVSCIAWTP 317 (827)
Q Consensus 289 ~~~~~~l-~~~~~~~~~~h~~~V~~l~~sp 317 (827)
+..+... .. ...+|.++-|+|
T Consensus 94 ~~~l~~~~~s--------~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLFS--------VETDISKGIWDR 115 (665)
T ss_pred CCceeccccc--------cccchheeeccc
Confidence 4444321 11 345677887774
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.56 E-value=0.73 Score=48.96 Aligned_cols=280 Identities=16% Similarity=0.124 Sum_probs=143.1
Q ss_pred CeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEec----------CcEEEEEEEEecCceeecCCCC
Q 003356 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLYLHIFKVQITEKSIQIGGKQ 109 (827)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~----------dg~l~l~~v~~~~~~~~~~~~~ 109 (827)
+++.|.|.+ .+..++... -|.+-.+..||||+.++++++ .-.|.+||..+-.
T Consensus 17 ~rv~viD~d-~~k~lGmi~--------~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~--------- 78 (342)
T PF06433_consen 17 SRVYVIDAD-SGKLLGMID--------TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS--------- 78 (342)
T ss_dssp EEEEEEETT-TTEEEEEEE--------EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE---------
T ss_pred ceEEEEECC-CCcEEEEee--------cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc---------
Confidence 489999986 555666543 133445778999999999772 2357777764221
Q ss_pred CCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec--CCcEEEEecCCccCcceeecccCCCCcccceecccCC
Q 003356 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (827)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~--dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~ 187 (827)
+...+++..+.+.. .........++.|++.+++..- ...|.+++....+... ++
T Consensus 79 ----~~~EI~iP~k~R~~-~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~-ei------------------ 134 (342)
T PF06433_consen 79 ----PTGEIEIPPKPRAQ-VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG-EI------------------ 134 (342)
T ss_dssp ----EEEEEEETTS-B---BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE-EE------------------
T ss_pred ----ccceEecCCcchhe-ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceee-ee------------------
Confidence 11222221111110 1112234466777887777643 3345555554332211 00
Q ss_pred CCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeec-cCccccceeecccee-cCCCCcEE-EEE
Q 003356 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE-LGSGDAVC-ASI 264 (827)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-~~~~~~~~~~~~~~~-~~h~~~v~-va~ 264 (827)
...++ ...|......|..++.||+++-+..+ ++... ...+ +.+ ........ -++
T Consensus 135 ------------------~~PGC--~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~--~~~t-~~F~~~~dp~f~~~~~ 191 (342)
T PF06433_consen 135 ------------------DTPGC--WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA--QKST-KVFDPDDDPLFEHPAY 191 (342)
T ss_dssp ------------------EGTSE--EEEEEEETTEEEEEETTSCEEEEEETSTSSEE--EEEE-EESSTTTS-B-S--EE
T ss_pred ------------------cCCCE--EEEEecCCCceEEEecCCceEEEEECCCCCEe--Eeec-cccCCCCcccccccce
Confidence 00111 11233334577888899998887776 34333 1111 111 12222222 455
Q ss_pred cCCCCEEEEEecCCeEEEEEcCCCC-cceEEEEee---cCCCCCCCCCCeEEEEECCCCCEEEEEE--------cCC--c
Q 003356 265 APEQQILAVGTRRGVVELYDLAESA-SLIRTVSLY---DWGYSMDDTGPVSCIAWTPDNSAFAVGW--------KSR--G 330 (827)
Q Consensus 265 sp~~~lla~g~~dg~v~vw~~~~~~-~~~~~l~~~---~~~~~~~h~~~V~~l~~spDg~~Lasg~--------~Dg--~ 330 (827)
..++..+..-+.+|.|+--++.... +....++.. +....| ..|.-.-+++++....|.+-- +|+ .
T Consensus 192 ~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~W-rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 192 SRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGW-RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp ETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTE-EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred ECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCc-CCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence 5555566667889998887776522 112222210 000011 234455677877665555431 122 3
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCCCCCcccee---ec--ceeEEEccCCceEEEEecC
Q 003356 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM---SG--TSMMQWDEYGYRLYAIEEG 391 (827)
Q Consensus 331 v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~---sg--~~i~~W~~~~~~l~~~~~~ 391 (827)
|-++|+.+++.+..+.-. ..+.++..+.+. ++++ ++ ..+.++|..+++++...++
T Consensus 271 VWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~----~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIPLE--HPIDSIAVSQDD----KPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEETTTTEEEEEEEEE--EEESEEEEESSS----S-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEECCCCeEEEEEeCC--CccceEEEccCC----CcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 666688999988887642 347788888877 4433 22 2688899999988877653
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.25 Score=57.28 Aligned_cols=121 Identities=10% Similarity=0.172 Sum_probs=72.0
Q ss_pred cEEEEEEcCCcceEEEEEeCCcEEEEeec---cCccccceeeccceecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEc
Q 003356 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVS---KKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDL 285 (827)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~ 285 (827)
++..+..+......++...||.++..-++ |...+.-. ...-..+++ +++..+++.+.....-..|.+|.+
T Consensus 127 p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~------~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l 200 (933)
T KOG2114|consen 127 PASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY------SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSL 200 (933)
T ss_pred cceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee------eccCCCCceeeEEecCCceeEEEEecceeEEEEe
Confidence 34455545555666666666666554332 11111100 011245666 999988887444455567999999
Q ss_pred CCCCcc-eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 286 AESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 286 ~~~~~~-~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
.. ..+ ...+.. |..++.|-++++-...++.++. ..+.+|+..+...-.++.
T Consensus 201 ~g-r~p~~~~ld~--------~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 201 SG-RTPSLKVLDN--------NGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cC-CCcceeeecc--------CCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 85 332 233444 7788999999886554555544 589999998765544444
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.41 E-value=1 Score=50.36 Aligned_cols=114 Identities=14% Similarity=0.028 Sum_probs=56.1
Q ss_pred EEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecC
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~ 300 (827)
++.+.+|++++....++.+ +|........ .+...++ + .+..+..++.+|.+..+|..+ ++..-.......
T Consensus 164 ~v~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~~~sP~-v----~~~~v~~~~~~g~v~a~d~~~-G~~~W~~~~~~~ 236 (394)
T PRK11138 164 LVHTSNGMLQALNESDGAV-KWTVNLDVPSLTLRGESAPA-T----AFGGAIVGGDNGRVSAVLMEQ-GQLIWQQRISQP 236 (394)
T ss_pred EEECCCCEEEEEEccCCCE-eeeecCCCCcccccCCCCCE-E----ECCEEEEEcCCCEEEEEEccC-ChhhheeccccC
Confidence 4445567777666555543 4654432100 0111111 1 123566778889998888877 544332221000
Q ss_pred CCCCCCCCCeEEEEECC--CCCEEEEEEcCCcEEEEeccCCeeEEEe
Q 003356 301 GYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (827)
Q Consensus 301 ~~~~~h~~~V~~l~~sp--Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl 345 (827)
... ........+.-+| .+..+.+++.+|.+...|..+|+...+.
T Consensus 237 ~~~-~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 237 TGA-TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CCc-cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 000 0000111122233 2445556667799999999888766543
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.40 E-value=0.023 Score=63.22 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=53.9
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
..+.++||+-..|+.+ .|++|.+||...+... ..+.. =..+.++|+|||.+++|++..|.+.+||+..+.
T Consensus 262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~---~~ka~------~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVTL---LAKAE------FIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ceEEecCcccceEEEEecCCeEEEEEcCCCeee---eeeec------ccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 4556789998777666 7999999998633222 22221 113689999999999999999999999998766
Q ss_pred ce
Q 003356 101 KS 102 (827)
Q Consensus 101 ~~ 102 (827)
-.
T Consensus 333 i~ 334 (545)
T PF11768_consen 333 IK 334 (545)
T ss_pred cc
Confidence 43
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.13 Score=59.02 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=70.0
Q ss_pred cCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC-----CCEEEEEEcCCcEEEEec--c
Q 003356 265 APEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-----NSAFAVGWKSRGLTVWSV--S 337 (827)
Q Consensus 265 sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD-----g~~Lasg~~Dg~v~vWs~--~ 337 (827)
+.+|.++|+|+.||+|.|-.+.+ .+...+..- ..++.+++++|| .+.+++|+..| +.+..- .
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~-~~~~~~~df---------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl 148 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFT-DDEITQYDF---------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL 148 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccC-CccceeEec---------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh
Confidence 66899999999999999988877 555554443 568999999998 56888888866 766643 3
Q ss_pred CCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEe
Q 003356 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIE 389 (827)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~ 389 (827)
+.+--..+... .+.|.++.|..+- -.+++-.-+++++....+.+...
T Consensus 149 gnk~~v~l~~~-eG~I~~i~W~g~l----IAWand~Gv~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 149 GNKDSVVLSEG-EGPIHSIKWRGNL----IAWANDDGVKVYDTPTRQRLTNI 195 (846)
T ss_pred cCccceeeecC-ccceEEEEecCcE----EEEecCCCcEEEeccccceeecc
Confidence 33322222222 4567777764332 23333335556665555544443
No 325
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.22 E-value=0.37 Score=52.94 Aligned_cols=222 Identities=15% Similarity=0.140 Sum_probs=100.7
Q ss_pred CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecccccccee-e
Q 003356 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS-S 355 (827)
Q Consensus 277 dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~-s 355 (827)
.+.+.+||+.+ +... .+.. ..+.+....|||||+.+|-... +.|.+++..++... .+...+...+. .
T Consensus 22 ~~~y~i~d~~~-~~~~-~l~~--------~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~-~lT~dg~~~i~nG 89 (353)
T PF00930_consen 22 KGDYYIYDIET-GEIT-PLTP--------PPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQET-QLTTDGEPGIYNG 89 (353)
T ss_dssp EEEEEEEETTT-TEEE-ESS---------EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEE-ESES--TTTEEES
T ss_pred ceeEEEEecCC-CceE-ECcC--------CccccccceeecCCCeeEEEec-CceEEEECCCCCeE-EeccccceeEEcC
Confidence 35688899887 3322 2222 1457889999999999999876 78999998877433 33222211111 0
Q ss_pred eeecCCCCCCccceeecceeEEEccCCceEEEEe-cCCcceEEEEe-c--c----------eeeeecccCCCeeeeEEEE
Q 003356 356 PIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIE-EGSSERVLIFS-F--G----------KCCLNRGVSGMTYARQVIY 421 (827)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~-~~~~~~v~~~~-~--~----------~~~~s~~~d~~~~~w~~~~ 421 (827)
+ |+=- -.+.++.....+-|++++.++.... ....-..+.+. + . ++-..|.....+.++.+.-
T Consensus 90 ~---~dwv-yeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~ 165 (353)
T PF00930_consen 90 V---PDWV-YEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL 165 (353)
T ss_dssp B-----HH-HHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES
T ss_pred c---ccee-ccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC
Confidence 0 0000 0011222235667787777665432 22111111111 1 0 1112334444444443322
Q ss_pred cCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEE--EeCCc---eE-EEEcCCCeEEeeCCccceE
Q 003356 422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAV--AGLHG---LI-LYDIRQKKWRVFGDITQEQ 495 (827)
Q Consensus 422 ~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lav--ag~dg---~i-iwd~~t~~w~~f~~~~~e~ 495 (827)
...+. ..+..|........-+..+.|++|++.+++ .+++. .+ ++|..+++-+....+..+.
T Consensus 166 ~~~~~-------------~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~ 232 (353)
T PF00930_consen 166 ASGKT-------------TELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDG 232 (353)
T ss_dssp SSTCC-------------CEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSS
T ss_pred CCCcE-------------EEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCc
Confidence 22210 012223222333445889999999994443 34443 23 7788777644332111110
Q ss_pred EEEEE-EEEEe---CCEEEEEEEeeCCCcEEEEEeeCC
Q 003356 496 KIQSK-GLLWL---GKIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 496 ~~~v~-gl~W~---~~~li~~~~~~~~~~~~lrly~~~ 529 (827)
=+... .+.+. ++.++.. .+.++...|-+++..
T Consensus 233 Wv~~~~~~~~~~~~~~~~l~~--s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 233 WVDVYDPPHFLGPDGNEFLWI--SERDGYRHLYLYDLD 268 (353)
T ss_dssp SSSSSSEEEE-TTTSSEEEEE--EETTSSEEEEEEETT
T ss_pred ceeeecccccccCCCCEEEEE--EEcCCCcEEEEEccc
Confidence 00011 23333 3444444 235666777777764
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.035 Score=59.36 Aligned_cols=202 Identities=11% Similarity=0.083 Sum_probs=118.3
Q ss_pred eCCcEEEEeeccCccccceeec--ccee----cCCCCcEE-EEEcCCCCEEEEEec-CCeEEEEEcCCCCcceEEEEeec
Q 003356 228 SNGQLMSCSVSKKGLKLAEFIK--IDKE----LGSGDAVC-ASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 228 ~dG~~~~~~~~~~~~~~~~~~~--~~~~----~~h~~~v~-va~sp~~~lla~g~~-dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
.--+.+..++-|+..+.|.... +... ..|...+. ++.|-++.++.+++. |..++++|+.+ -..+.-++...
T Consensus 18 tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn-~DminmiKL~~ 96 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN-FDMINMIKLVD 96 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec-cchhhhccccc
Confidence 3455666677777788886543 1111 34555555 788889999999888 99999999987 33332222211
Q ss_pred CCCCCCCCCCeEEEEECC-CCC-EEEE-EEcCCcEEEEeccCCe-eEEEeccccccceeeeeecCCCCCCccceeecc--
Q 003356 300 WGYSMDDTGPVSCIAWTP-DNS-AFAV-GWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~sp-Dg~-~Las-g~~Dg~v~vWs~~~~~-l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (827)
-.+.+..+ .+| |-. .||+ ..+++.+.|+|-++.. ...-..+.+.++|..+.+.+.+ ....+..
T Consensus 97 ------lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~----Ds~vSiD~~ 165 (558)
T KOG0882|consen 97 ------LPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG----DSAVSIDIS 165 (558)
T ss_pred ------CCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc----cceeecccc
Confidence 12222222 222 222 3443 3466889999987654 3444455447788888888877 3333332
Q ss_pred -eeEEEccCC-ceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccC
Q 003356 374 -SMMQWDEYG-YRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (827)
Q Consensus 374 -~i~~W~~~~-~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~ 451 (827)
.+-.|.+++ ++.... . ..|.+....+ .-.+...
T Consensus 166 gmVEyWs~e~~~qfPr~------~-------------------l~~~~K~eTd--------------------Ly~f~K~ 200 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRT------N-------------------LNFELKHETD--------------------LYGFPKA 200 (558)
T ss_pred ceeEeecCCCcccCccc------c-------------------ccccccccch--------------------hhccccc
Confidence 566777653 111000 0 0111211111 0011111
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEE
Q 003356 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (827)
Q Consensus 452 ~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~ 486 (827)
.....++.|||+|..+++-+.|..+ +++..+|+-.
T Consensus 201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred ccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 2235689999999999999999999 9999999754
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=0.0066 Score=69.48 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=49.3
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 306 h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
|+..-+|++||-+.+.|++|...|.|+++++.+|....+...| .+.++.+.-+.++
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dg 1155 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDG 1155 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCc
Confidence 8888999999999999999999999999999999887777777 5677777766666
No 328
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.13 E-value=0.014 Score=60.20 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=70.1
Q ss_pred CcEEEEeeccCccccceeecc---cee----cCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCCcc---eEEEEe
Q 003356 230 GQLMSCSVSKKGLKLAEFIKI---DKE----LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASL---IRTVSL 297 (827)
Q Consensus 230 G~~~~~~~~~~~~~~~~~~~~---~~~----~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~~~---~~~l~~ 297 (827)
+.+++.+...+.+...|+... ..+ .-|..+++ +..=. +++.|.+.+.+|+|++||... .++ +....+
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeG 342 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEG 342 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeec
Confidence 444555555555544444322 111 34677776 44333 566777778899999999987 555 555555
Q ss_pred ecCCCCCCCCCCeEEE--EECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 298 YDWGYSMDDTGPVSCI--AWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~l--~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
|...-.-+ -..+....++++++|...|+|++..+.+++++..
T Consensus 343 --------HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 343 --------HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred --------ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 53322222 2234556788899999999999999999999864
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.06 E-value=0.11 Score=59.69 Aligned_cols=68 Identities=19% Similarity=0.348 Sum_probs=58.0
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 261 ~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
.++|+|..-+||.|..-|.+.+|...+ ...++... .|+.+|..+.|||||.+|.++..=|.+.+|...
T Consensus 64 SLCWHpe~~vLa~gwe~g~~~v~~~~~--~e~htv~~-------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 64 SLCWHPEEFVLAQGWEMGVSDVQKTNT--TETHTVVE-------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhccChHHHHHhhccccceeEEEecCC--ceeeeecc-------CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 488999999999999999999999876 23333322 299999999999999999999999999999875
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.00 E-value=1.1 Score=51.25 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=73.1
Q ss_pred CCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcc-eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEE
Q 003356 257 GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (827)
Q Consensus 257 ~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~-~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vW 334 (827)
...+. -+++..+++++.|+.-|.+.+|+-.. +.. +....+ ..+.+..+..|++.+++|+|+..|.|.|+
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~-~~~~~~~~~~--------~~~~~~~~~vs~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHT-GEMRKLKNEG--------ATGITCVRSVSSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCc-hhhhcccccC--------ccceEEEEEecchhHhhhhhcCCceEEee
Confidence 33444 66777899999999999999998765 322 222222 46777888999999999999999999998
Q ss_pred eccCCe---e--EEEeccccccceeeeeecCCCCCCccceeecc
Q 003356 335 SVSGCR---L--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 335 s~~~~~---l--~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
-+..+. + +......+...|++++|++++ ..+.+|.
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~----~k~ysGD 143 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNG----MKLYSGD 143 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecccc----cEEeecC
Confidence 775432 1 222222125678888888888 6666664
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.99 E-value=0.036 Score=63.42 Aligned_cols=104 Identities=19% Similarity=0.291 Sum_probs=77.9
Q ss_pred EEEcCCCCEEEEEec----CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 262 ASIAPEQQILAVGTR----RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 262 va~sp~~~lla~g~~----dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
.+|+|...++|+++- .|.|.||- ++ +++-+... .+-.+++++|+|.--.||+||+-|.+.+|...
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dt-GEPqr~Vt---------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DT-GEPQRDVT---------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cC-CCCCcccc---------cceehhhhccChHHHHHhhccccceeEEEecC
Confidence 789999999998863 57888873 44 44333221 12336789999999999999999999999987
Q ss_pred CCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccC
Q 003356 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (827)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~ 381 (827)
..+ .++....+..++..+.||++| ..++++. .+..|..+
T Consensus 90 ~~e-~htv~~th~a~i~~l~wS~~G----~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 90 TTE-THTVVETHPAPIQGLDWSHDG----TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred Cce-eeeeccCCCCCceeEEecCCC----CeEEEcCCCceeEEEEee
Confidence 654 555555447889999999999 7888775 66777654
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.96 E-value=0.0069 Score=69.33 Aligned_cols=198 Identities=15% Similarity=0.156 Sum_probs=115.9
Q ss_pred cccccceEEEeecC--CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccC
Q 003356 128 FAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (827)
Q Consensus 128 ~~~~~~~v~~~~~d--~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~ 205 (827)
+..+....+|++.. .+.|++|+-+|.|+++.......... ..
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s------------------------------------~n 1140 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES------------------------------------VN 1140 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc------------------------------------cc
Confidence 33444555666544 47899999999999886653322111 12
Q ss_pred CCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCc--cccceeeccceecCCC--CcEEEEEcCCCCEEEEEecCCeEE
Q 003356 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG--LKLAEFIKIDKELGSG--DAVCASIAPEQQILAVGTRRGVVE 281 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~--~~~~~~~~~~~~~~h~--~~v~va~sp~~~lla~g~~dg~v~ 281 (827)
.+++.++.++ =+.||...++.+.-.. ..+|+....-. ..|+ ..-|+.|+..-..-+.|+......
T Consensus 1141 cH~SavT~ve----------Ps~dgs~~Ltsss~S~PlsaLW~~~s~~~-~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~ 1209 (1516)
T KOG1832|consen 1141 CHQSAVTLVE----------PSVDGSTQLTSSSSSSPLSALWDASSTGG-PRHSFDEDKAVKFSNSLQFRALGTEADDAL 1209 (1516)
T ss_pred cccccccccc----------ccCCcceeeeeccccCchHHHhccccccC-ccccccccceeehhhhHHHHHhcccccceE
Confidence 3455565555 3457777766654333 34787653211 2233 223478887666666777777889
Q ss_pred EEEcCCCCcceEE-EEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecC
Q 003356 282 LYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (827)
Q Consensus 282 vw~~~~~~~~~~~-l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp 360 (827)
+||+.+ +..+.+ +.. ..+ ..-.-++..|||+.+++.- || -+||+.....++.+... + .--.=.|+|
T Consensus 1210 ~YDvqT-~~~l~tylt~-~~~----~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~f-t-~~~~G~FHP 1276 (1516)
T KOG1832|consen 1210 LYDVQT-CSPLQTYLTD-TVT----SSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQF-T-DYGGGGFHP 1276 (1516)
T ss_pred EEeccc-CcHHHHhcCc-chh----hhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhh-e-ecccccccC
Confidence 999998 554443 322 111 1122378899999988763 34 37999776555444322 0 011224677
Q ss_pred CCCCCccceeecceeEEEccCCceEEEEecC
Q 003356 361 NQDCKYEPLMSGTSMMQWDEYGYRLYAIEEG 391 (827)
Q Consensus 361 ~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~ 391 (827)
.+ ..++ .+.-+||..+++++.....
T Consensus 1277 ~g----~eVI--INSEIwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1277 SG----NEVI--INSEIWDMRTFKLLHSVPS 1301 (1516)
T ss_pred CC----ceEE--eechhhhhHHHHHHhcCcc
Confidence 76 4333 3667899999998776544
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.94 E-value=2.3 Score=47.17 Aligned_cols=93 Identities=19% Similarity=0.147 Sum_probs=52.7
Q ss_pred ccEEEEcCCccEEEEEecCcEEEEEEEEecCcee-e--cCCCC---------CCCceeeeEe--------eEeecccccc
Q 003356 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI-Q--IGGKQ---------PSGLFFIKIS--------LVLNEQLPFA 129 (827)
Q Consensus 70 ~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~-~--~~~~~---------~~~~~~~~~~--------l~~~~~~~~~ 129 (827)
++.+.|+++..-|||++..|.|.+|+....+... . ....+ .....+.++. -.+.-...++
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 5789999999999999999999999987654321 0 00000 0011122221 0111112234
Q ss_pred cccceEEEeecCC-CeEEEEecCCcEEEEecCCc
Q 003356 130 EKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGE 162 (827)
Q Consensus 130 ~~~~~v~~~~~d~-~~llv~t~dg~i~~~~w~~~ 162 (827)
...+.|+++...+ ..+++|..+|.+.+++..+.
T Consensus 84 ~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP 117 (395)
T PF08596_consen 84 AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP 117 (395)
T ss_dssp --S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT
T ss_pred ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC
Confidence 4577888887655 77889999999999888654
No 334
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.86 E-value=2.6 Score=43.44 Aligned_cols=217 Identities=14% Similarity=0.135 Sum_probs=107.0
Q ss_pred CCcEEEEeeccCccccceeecccee-cCCCCcEEEEEc-CCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCC
Q 003356 229 NGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVCASIA-PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (827)
Q Consensus 229 dG~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~va~s-p~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h 306 (827)
+|+++++....+.+..++....... .....+.-+++. ++++++++ ..++ +.++|..+ ++......... ....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~-~~~~-~~~~d~~~-g~~~~~~~~~~---~~~~ 84 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVA-DSGG-IAVVDPDT-GKVTVLADLPD---GGVP 84 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEE-ETTC-EEEEETTT-TEEEEEEEEET---TCSC
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEE-EcCc-eEEEecCC-CcEEEEeeccC---CCcc
Confidence 6666666555555555554443321 111224557887 66655554 4444 45558776 43333222210 0002
Q ss_pred CCCeEEEEECCCCCEEEEEEcC--------CcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCcccee-ecc---e
Q 003356 307 TGPVSCIAWTPDNSAFAVGWKS--------RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT---S 374 (827)
Q Consensus 307 ~~~V~~l~~spDg~~Lasg~~D--------g~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~-sg~---~ 374 (827)
....+.+++.|||++.++.... |.+..++.. ++......+ ....+.++|+|++ ..+. +-+ .
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg----~~lyv~ds~~~~ 157 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDG----KTLYVADSFNGR 157 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTS----SEEEEEETTTTE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcc----hheeecccccce
Confidence 3467899999999988876644 446666666 343222222 3346788899987 4332 211 2
Q ss_pred eEEEccC--CceEEEEecCCcceEEEEecce-eeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccC
Q 003356 375 MMQWDEY--GYRLYAIEEGSSERVLIFSFGK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (827)
Q Consensus 375 i~~W~~~--~~~l~~~~~~~~~~v~~~~~~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~ 451 (827)
+..++.. +.++-. ...+..+.... ..--...|..-.+|....+..++..+.... .....+.+|.
T Consensus 158 i~~~~~~~~~~~~~~-----~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G---~~~~~i~~p~----- 224 (246)
T PF08450_consen 158 IWRFDLDADGGELSN-----RRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG---KLLREIELPV----- 224 (246)
T ss_dssp EEEEEEETTTCCEEE-----EEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS---CEEEEEE-SS-----
T ss_pred eEEEeccccccceee-----eeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc---cEEEEEcCCC-----
Confidence 3333321 221100 00011111111 111112233345677777888888887642 2334455552
Q ss_pred CCcEEEEEE-cCCCCEEEEEeC
Q 003356 452 NWPVQHVAA-SKDGMFLAVAGL 472 (827)
Q Consensus 452 ~~~I~~va~-SpdG~~lavag~ 472 (827)
..+++++| -+|++.|++.+.
T Consensus 225 -~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 225 -PRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -SSEEEEEEESTTSSEEEEEEB
T ss_pred -CCEEEEEEECCCCCEEEEEeC
Confidence 24788999 578777776653
No 335
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.12 Score=61.19 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=59.1
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 267 ~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
.+.++|.|+..|.|...|+..+-+. ..++. .-+++|++++|+.||+.++.|-.+|.|.+||+..+...+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP--LHQNE------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch--hhcCC------ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 5678999999999999887652111 11111 147899999999999999999999999999999998888877
Q ss_pred ccc
Q 003356 347 QIS 349 (827)
Q Consensus 347 ~~~ 349 (827)
.++
T Consensus 170 e~~ 172 (1206)
T KOG2079|consen 170 EHG 172 (1206)
T ss_pred ecC
Confidence 663
No 336
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.63 E-value=0.13 Score=59.78 Aligned_cols=175 Identities=17% Similarity=0.115 Sum_probs=110.3
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 267 ~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
+...+..|+--..+..+|+.+ .+..+.... ..+.|+-|+. +++.|..|...|+|.+=|..+.+.++++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~~v--------~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNT-EKETRTTNV--------SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD 214 (1118)
T ss_pred CCcceeecchhhheeeeeccc-ceeeeeeec--------cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee
Confidence 344556666666677778776 555554444 3444766664 57899999999999999999999999998
Q ss_pred cccccceeeeeecCCCCCCccceeecc------------eeEEEccCCceEEEEecCCcc-eEEEEec--ceeeeecccC
Q 003356 347 QISLSSISSPIVKPNQDCKYEPLMSGT------------SMMQWDEYGYRLYAIEEGSSE-RVLIFSF--GKCCLNRGVS 411 (827)
Q Consensus 347 ~~~~~~v~s~~~sp~~~~~~~~l~sg~------------~i~~W~~~~~~l~~~~~~~~~-~v~~~~~--~~~~~s~~~d 411 (827)
.| ++.++.... .| ..+++.+ -+++||.+..+.+.-++-+.+ .+..|-+ ...++..+..
T Consensus 215 aH-s~siSDfDv--~G----NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~s 287 (1118)
T KOG1275|consen 215 AH-SGSISDFDV--QG----NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQS 287 (1118)
T ss_pred cc-ccceeeeec--cC----CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecc
Confidence 88 555555433 23 4444433 356788777665543332221 2344443 3444555555
Q ss_pred CCeeeeEEEEcCCeEEEEecCCCCcceEEEeeece---eeccCCCc-EEEEEEcCCCCEEEEEeCCceE-EEE
Q 003356 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV---SYISQNWP-VQHVAASKDGMFLAVAGLHGLI-LYD 479 (827)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~---~~~~~~~~-I~~va~SpdG~~lavag~dg~i-iwd 479 (827)
|...+-+-..-.+ |. .+..-+++ +....+|++|..+|.|..+|.+ +|.
T Consensus 288 Gq~q~vd~~~lsN--------------------P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 288 GQFQFVDTATLSN--------------------PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeeccccccCC--------------------CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 6555444222222 11 11222333 8899999999999999999999 997
No 337
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.57 E-value=1.6 Score=44.63 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=45.9
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEe
Q 003356 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (827)
Q Consensus 267 ~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl 345 (827)
++..+.+++.++.+..||..+ ++.+-..... +++.... ..++..++++..|+.+..+|..+|+...+.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~~---------~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKT-GKVLWRFDLP---------GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTT-SEEEEEEECS---------SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEeecc---------cccccee-eecccccccccceeeeEecccCCcceeeee
Confidence 556677778999999999988 6665555431 1111111 224556666678889999998888887763
No 338
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.55 E-value=0.95 Score=46.21 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=48.7
Q ss_pred EEcCCCCEEEEEecC-----CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 263 SIAPEQQILAVGTRR-----GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 263 a~sp~~~lla~g~~d-----g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
.|||||++|...-.| |.|-|||.+..-+.+-.+.. |.-.-..+.|.+||+.|+.+. |+|..---+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t--------~GiGpHev~lm~DGrtlvvan--GGIethpdf 189 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST--------HGIGPHEVTLMADGRTLVVAN--GGIETHPDF 189 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc--------CCcCcceeEEecCCcEEEEeC--Cceeccccc
Confidence 599999998765433 78999998863344445555 655567899999999998874 677776444
Q ss_pred CC
Q 003356 338 GC 339 (827)
Q Consensus 338 ~~ 339 (827)
+.
T Consensus 190 gR 191 (366)
T COG3490 190 GR 191 (366)
T ss_pred Cc
Confidence 44
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.53 E-value=0.34 Score=55.53 Aligned_cols=104 Identities=8% Similarity=-0.010 Sum_probs=68.5
Q ss_pred EEEEeCCcEEEEeec-cCccccceeecccee---------------cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCC
Q 003356 224 FVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE---------------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~-~~~~~~~~~~~~~~~---------------~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~ 287 (827)
+.++|||+.++++.. +.++.+.|....+.+ .--..+...+|.++|....+-.-|.+|..||++.
T Consensus 326 V~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 326 VNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 458899997776654 556666665543210 1124566789999999888999999999999875
Q ss_pred C-----Cc-ceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc
Q 003356 288 S-----AS-LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (827)
Q Consensus 288 ~-----~~-~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~ 327 (827)
. ++ ....+...+..|.++|......=.-.|||++|++...
T Consensus 406 a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 406 AIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred HHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 1 11 1223333445566677655555556789999988754
No 340
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.46 E-value=0.42 Score=55.78 Aligned_cols=235 Identities=15% Similarity=0.159 Sum_probs=116.7
Q ss_pred cCCCCEEEEEecCC------eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC------CcEE
Q 003356 265 APEQQILAVGTRRG------VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS------RGLT 332 (827)
Q Consensus 265 sp~~~lla~g~~dg------~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D------g~v~ 332 (827)
+..+.++++|+.++ ++..||..+ ......-.. + +...-.+++. -+|...++|+.| .++.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~-~~w~~~a~m---~----~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve 352 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKT-NEWSSLAPM---P----SPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVE 352 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCc-CcEeecCCC---C----cccccccEEE-ECCEEEEEccccCCCcccceEE
Confidence 34567888888874 677788766 322211111 1 1112223333 356888899988 3466
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--------eeEEEccCCceEEEEecCC---cceEEEEec
Q 003356 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGYRLYAIEEGS---SERVLIFSF 401 (827)
Q Consensus 333 vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--------~i~~W~~~~~~l~~~~~~~---~~~v~~~~~ 401 (827)
.+|...++ ...+..........-...-++ ..++.|. ++-.||+.+.+ |...... ....-...+
T Consensus 353 ~YD~~~~~-W~~~a~M~~~R~~~~v~~l~g----~iYavGG~dg~~~l~svE~YDp~~~~-W~~va~m~~~r~~~gv~~~ 426 (571)
T KOG4441|consen 353 RYDPRTNQ-WTPVAPMNTKRSDFGVAVLDG----KLYAVGGFDGEKSLNSVECYDPVTNK-WTPVAPMLTRRSGHGVAVL 426 (571)
T ss_pred EecCCCCc-eeccCCccCccccceeEEECC----EEEEEeccccccccccEEEecCCCCc-ccccCCCCcceeeeEEEEE
Confidence 66766554 211111100000000000011 3333332 34556665443 2221111 111122222
Q ss_pred -ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCce-----
Q 003356 402 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL----- 475 (827)
Q Consensus 402 -~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~----- 475 (827)
++..+.|+.++... .+-....+|.....|..+.--.+-..+ .-+-.-+|+..++||.||.
T Consensus 427 ~g~iYi~GG~~~~~~---------~l~sve~YDP~t~~W~~~~~M~~~R~~-----~g~a~~~~~iYvvGG~~~~~~~~~ 492 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSN---------CLNSVECYDPETNTWTLIAPMNTRRSG-----FGVAVLNGKIYVVGGFDGTSALSS 492 (571)
T ss_pred CCEEEEEcCcCCCcc---------ccceEEEEcCCCCceeecCCccccccc-----ceEEEECCEEEEECCccCCCccce
Confidence 66667777666442 111122333344567543211111111 1133457888999998873
Q ss_pred E-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeCC
Q 003356 476 I-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 476 i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~~ 529 (827)
+ .||..+++|.........+. .+....+.+..+++|+++.......+.+|...
T Consensus 493 VE~ydp~~~~W~~v~~m~~~rs-~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 493 VERYDPETNQWTMVAPMTSPRS-AVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred EEEEcCCCCceeEcccCccccc-cccEEEECCEEEEEecccCccccceeEEcCCC
Confidence 6 89999999998754443321 23335566778888887776777778888553
No 341
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.40 E-value=0.033 Score=37.44 Aligned_cols=34 Identities=41% Similarity=0.524 Sum_probs=29.7
Q ss_pred eeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEE
Q 003356 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (827)
Q Consensus 446 ~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd 479 (827)
..+..|..+|.+++|+++++++++++.||.+ +|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3455778899999999999999999999999 885
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.37 E-value=0.3 Score=54.64 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=41.1
Q ss_pred EEEecceEEEEE---cc--CeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEe-cCcEEEEEEEEe
Q 003356 26 YFKVNNGLLLIA---SP--CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQI 98 (827)
Q Consensus 26 ~fspdg~lla~~---~~--~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t-~dg~l~l~~v~~ 98 (827)
+++|++..++-. .. ..+.+++.+ .+. ....+...|.+..-.|||||+.||... .+|...||-+..
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~-~g~-------~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLN-TGK-------RPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEecc-CCc-------cceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 578888866544 22 357888875 221 111122357778899999999988865 556666665543
No 343
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.16 E-value=9.9 Score=45.53 Aligned_cols=81 Identities=21% Similarity=0.092 Sum_probs=45.7
Q ss_pred cCcccEEEEcCCc------cEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeec
Q 003356 67 EGENLQAVWSPDT------KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS 140 (827)
Q Consensus 67 ~G~~~~v~wSPDg------~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~ 140 (827)
.+++.|+-++|-| +.+|+|.-+..+.+.-...+........ +. ...-.+..-.+++..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~--------------l~--~~~iPRSIl~~~~e~ 593 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQ--------------LS--GEIIPRSILLTTFEG 593 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeec--------------cC--CCccchheeeEEeec
Confidence 3677788888653 2677777665554433321111110000 00 011122233456677
Q ss_pred CCCeEEEEecCCcEEEEecCCcc
Q 003356 141 DNKHMLLGLSDGSLYSISWKGEF 163 (827)
Q Consensus 141 d~~~llv~t~dg~i~~~~w~~~~ 163 (827)
|..+|++++.||.+..+..+...
T Consensus 594 d~~yLlvalgdG~l~~fv~d~~t 616 (1096)
T KOG1897|consen 594 DIHYLLVALGDGALLYFVLDINT 616 (1096)
T ss_pred cceEEEEEcCCceEEEEEEEccc
Confidence 78999999999999888877544
No 344
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.12 E-value=0.43 Score=55.73 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=94.0
Q ss_pred EEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEE
Q 003356 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (827)
Q Consensus 135 v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 214 (827)
++-+..++..+.+|...|.|.+-+.+ ..... ..+..+.+.|.+
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~LrD~~--s~~~i----------------------------------ht~~aHs~siSD- 222 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLRDPN--SFETI----------------------------------HTFDAHSGSISD- 222 (1118)
T ss_pred eEEEEecCcEEEeecccceEEeecCC--cCcee----------------------------------eeeeccccceee-
Confidence 44455666778888888888663332 11111 112334444544
Q ss_pred EEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEEEEEcCCC-CEEEEEecCCeEEEEEcCCCCc
Q 003356 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQ-QILAVGTRRGVVELYDLAESAS 290 (827)
Q Consensus 215 ~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~va~sp~~-~lla~g~~dg~v~vw~~~~~~~ 290 (827)
++..+|.++.+.-.++..-.. -|.-+++||+...+.+ .-+-++.-+.|.|.- ..+|+.+..|...+-|..+-..
T Consensus 223 -fDv~GNlLitCG~S~R~~~l~-~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 223 -FDVQGNLLITCGYSMRRYNLA-MDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred -eeccCCeEEEeeccccccccc-ccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence 334444444444444432222 2344678888765444 233444447888874 5788999999999977333122
Q ss_pred c-eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 291 L-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 291 ~-~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
+ ........ -...+..+.+|+.|..||.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p------~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNP------NGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEcc------CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 22222210 2344999999999999999999999999974
No 345
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.95 E-value=7.8 Score=43.19 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=43.5
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC--CCCEEEEEEcCCcEEEEeccCCeeEEE
Q 003356 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMST 344 (827)
Q Consensus 267 ~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--Dg~~Lasg~~Dg~v~vWs~~~~~l~~t 344 (827)
++..+.+++.+|.+..+|.++ ++.+-.... .+.+.+ +| .+..+.++..++.+.-+|..+|+.+.+
T Consensus 119 ~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~---------~~~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 185 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAED-GEVAWQTKV---------AGEALS---RPVVSDGLVLVHTSNGMLQALNESDGAVKWT 185 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCC-CCCcccccC---------CCceec---CCEEECCEEEEECCCCEEEEEEccCCCEeee
Confidence 355677788999999999887 554433332 111111 12 233555677778999999998887766
Q ss_pred ec
Q 003356 345 IR 346 (827)
Q Consensus 345 l~ 346 (827)
..
T Consensus 186 ~~ 187 (394)
T PRK11138 186 VN 187 (394)
T ss_pred ec
Confidence 64
No 346
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.87 E-value=0.65 Score=40.81 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=55.9
Q ss_pred cEEEEeeccCccccceeecccee-cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCC
Q 003356 231 QLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP 309 (827)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~ 309 (827)
.-++++++|..+++++......- ......+.+.-... ..+|.|..+|+|-+|+-.. +..+ .+. +..
T Consensus 16 ~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR-iKS---------K~~ 82 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR-IKS---------KNQ 82 (111)
T ss_pred ceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee-ecc---------CCC
Confidence 36777888999998875543211 33344444443333 6799999999999997532 3333 222 233
Q ss_pred eEEEEECC---CCC-EEEEEEcCCcEE
Q 003356 310 VSCIAWTP---DNS-AFAVGWKSRGLT 332 (827)
Q Consensus 310 V~~l~~sp---Dg~-~Lasg~~Dg~v~ 332 (827)
+.++.+.. ||. -|++||.+|.|-
T Consensus 83 ~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 83 VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 56655543 444 799999998774
No 347
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.84 E-value=8.4 Score=43.64 Aligned_cols=105 Identities=17% Similarity=0.285 Sum_probs=66.1
Q ss_pred eEEEEEccCeEEEeecCCceeE-----EEEE---EeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCcee
Q 003356 32 GLLLIASPCHIELWSSSQHKVR-----LGKY---KRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (827)
Q Consensus 32 ~lla~~~~~~v~IW~~~~~~~~-----l~~~---~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~ 103 (827)
.+||+-....|.||.. .+... +... .|.+..+- -....|+|-...|+|-|+...=.++++..++.+.
T Consensus 74 aLLAVQHkkhVtVWqL-~~s~~e~~K~l~sQtcEi~e~~pvL----pQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srV 148 (671)
T PF15390_consen 74 ALLAVQHKKHVTVWQL-CPSTTERNKLLMSQTCEIREPFPVL----PQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRV 148 (671)
T ss_pred ceEEEeccceEEEEEe-ccCccccccceeeeeeeccCCcccC----CCcccccCCCceEEEEecCceeEeeeeeeCCceE
Confidence 4888889999999998 45321 1111 11111110 1457899999999999998877888887655321
Q ss_pred ecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCc
Q 003356 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGE 162 (827)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~ 162 (827)
+..+...+.... -|...||.+|+++.++ .++.|-||..
T Consensus 149 -------------------kaDi~~~G~IhC-ACWT~DG~RLVVAvGS-sLHSyiWd~~ 186 (671)
T PF15390_consen 149 -------------------KADIKTSGLIHC-ACWTKDGQRLVVAVGS-SLHSYIWDSA 186 (671)
T ss_pred -------------------EEeccCCceEEE-EEecCcCCEEEEEeCC-eEEEEEecCc
Confidence 111111221111 2567889999998776 6788889865
No 348
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.74 E-value=0.082 Score=38.78 Aligned_cols=34 Identities=26% Similarity=0.547 Sum_probs=30.1
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 003356 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 307 ~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~ 340 (827)
...|.+++|+|...+||.|..||.|.++.+.+.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 4579999999999999999999999999995543
No 349
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.63 E-value=0.061 Score=39.45 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=26.7
Q ss_pred cccEEEEcCCccEEEEEecCcEEEEEEEE
Q 003356 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (827)
Q Consensus 69 ~~~~v~wSPDg~~lav~t~dg~l~l~~v~ 97 (827)
.+..++|+|....||+++.+|.|.+|++.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 46789999999999999999999999984
No 350
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.21 Score=53.70 Aligned_cols=127 Identities=10% Similarity=0.008 Sum_probs=84.6
Q ss_pred ceEEEEEeCC----cEEEEeeccCccccceeecccee-----cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCc
Q 003356 221 RLLFVLYSNG----QLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS 290 (827)
Q Consensus 221 ~~~~~~s~dG----~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~ 290 (827)
....|+...| .+.+....++.+.+.|.....+. .-|..++. +.+++.+..+.+....|.|..|.....-+
T Consensus 99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q 178 (558)
T KOG0882|consen 99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ 178 (558)
T ss_pred CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence 3456666666 33333344555666665432211 34777776 99999999999999999999999873111
Q ss_pred ceE-----EEEeecCCC-CCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 291 LIR-----TVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 291 ~~~-----~l~~~~~~~-~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
..+ .++....-+ -+...+...++.|+|+|..+++-..|..|+++...+++++..+.+
T Consensus 179 fPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 179 FPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred CccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 111 111100001 112456678999999999999999999999999999998876654
No 351
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.36 E-value=6.7 Score=39.84 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=40.1
Q ss_pred cCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 276 ~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
.+|+|..||..+ ++.+-...... ...+.+ +. ..+++..+.++..++.+..||..+|+.+.+..
T Consensus 1 ~~g~l~~~d~~t-G~~~W~~~~~~-----~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 1 DDGTLSALDPRT-GKELWSYDLGP-----GIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp -TSEEEEEETTT-TEEEEEEECSS-----SCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred CCCEEEEEECCC-CCEEEEEECCC-----CCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence 368899999877 66555443210 012222 11 33366677777888999999998888776654
No 352
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.17 E-value=0.017 Score=64.23 Aligned_cols=203 Identities=17% Similarity=0.227 Sum_probs=112.1
Q ss_pred cEEEEEcC--CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEE----cCCcE
Q 003356 259 AVCASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGW----KSRGL 331 (827)
Q Consensus 259 ~v~va~sp--~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~----~Dg~v 331 (827)
.-|++.+. +...+|+|..+|.|.+-.+...-.. .+.+.++|..+.++++|++ |...||+|- .|..+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL 131 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccc-------cceecccccccccccccccccHHHHHhhhhhhcccCCc
Confidence 44555544 4468999999999999777651111 1233445888999999999 788999884 35679
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccC
Q 003356 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVS 411 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d 411 (827)
.|||..++.. .+..++.|+. + ...|.....|. . +.+.+.+|...
T Consensus 132 ~Iwdi~s~lt---------vPke~~~fs~-~------~l~gqns~cwl-r-------------------d~klvlaGm~s 175 (783)
T KOG1008|consen 132 KIWDINSLLT---------VPKESPLFSS-S------TLDGQNSVCWL-R-------------------DTKLVLAGMTS 175 (783)
T ss_pred cceecccccC---------CCcccccccc-c------cccCccccccc-c-------------------Ccchhhccccc
Confidence 9999987631 1111222211 0 11222344454 1 13344555555
Q ss_pred CCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcC-CCCEEEEEeCCceE-EEEcCCCeEEeeC
Q 003356 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRVFG 489 (827)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Sp-dG~~lavag~dg~i-iwd~~t~~w~~f~ 489 (827)
..+++.++.+...+. -.-....++.+.++| .+.|+++-. ||.+ +||..-+--+.|.
T Consensus 176 r~~~ifdlRqs~~~~---------------------~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~ 233 (783)
T KOG1008|consen 176 RSVHIFDLRQSLDSV---------------------SSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQ 233 (783)
T ss_pred chhhhhhhhhhhhhh---------------------hhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHH
Confidence 566666655443321 001122366788999 888998766 7777 9995322111111
Q ss_pred C-ccceEEE--EEEEEEEeC--CEEEEEEEeeCCCcEEEEEeeCC
Q 003356 490 D-ITQEQKI--QSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 490 ~-~~~e~~~--~v~gl~W~~--~~li~~~~~~~~~~~~lrly~~~ 529 (827)
. ..+++.+ .+..+.|.. ..+++.+.. ....||+|+..
T Consensus 234 ~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIrlydi~ 275 (783)
T KOG1008|consen 234 IILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIRLYDIC 275 (783)
T ss_pred HHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEEEeccc
Confidence 1 1112211 245667753 333333222 33557787763
No 353
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.96 E-value=0.69 Score=51.76 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=52.4
Q ss_pred EEeCCcEEEEeeccC-ccccceee----ccceecCCC-CcEEEEEcCCCCEEEEEecC-Ce--EEEEEcCCCCcceEEEE
Q 003356 226 LYSNGQLMSCSVSKK-GLKLAEFI----KIDKELGSG-DAVCASIAPEQQILAVGTRR-GV--VELYDLAESASLIRTVS 296 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~-~~~~~~~~----~~~~~~~h~-~~v~va~sp~~~lla~g~~d-g~--v~vw~~~~~~~~~~~l~ 296 (827)
++|||+.++..++.+ ..++|-.. ..++..... ...+-.+||||++|+..+.+ |. |.++++.+ +..++.+.
T Consensus 289 ~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~-~~~~~~lt 367 (425)
T COG0823 289 WSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS-GGKIRILT 367 (425)
T ss_pred CCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC-CCcEEEcc
Confidence 678888777666533 33333221 112221111 12256799999999987753 44 66666655 33244443
Q ss_pred eecCCCCCCCCCCeEEEEECCCCCEEEEEEc
Q 003356 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (827)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~ 327 (827)
. +.....-+|.|+|+.+...+.
T Consensus 368 ~---------~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 368 S---------TYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred c---------cccCCCCCcCCCCceEEEecc
Confidence 2 444556678899887766554
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.74 E-value=9.5 Score=39.31 Aligned_cols=123 Identities=12% Similarity=0.138 Sum_probs=65.8
Q ss_pred EEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCc
Q 003356 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS 290 (827)
Q Consensus 211 i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~ 290 (827)
+..++|++..+.+.++......++--..++.+ ...+ .+.+..+.=-+++--++.++++--.++.+.++++...++
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~G~v--lr~i---~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSLDGKV--LRRI---PLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT--E--EEEE---E-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcCCCCE--EEEE---eCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence 77778887766544444443333322223222 1111 123444444477777777777666789999999855333
Q ss_pred ceE--EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 291 LIR--TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 291 ~~~--~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
.+. ..+..+.+....+...+-.++|.|.++.|.++-+..-.+++.+.+
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 322 222223333333566799999999988888888888888888865
No 355
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.60 E-value=2.4 Score=50.60 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=50.8
Q ss_pred EEEEecceEEEEEccCeEEEeecCCcee----------EEEE-EEeChHhh---hhcCcccEEEEcCCc---cEEEEEec
Q 003356 25 IYFKVNNGLLLIASPCHIELWSSSQHKV----------RLGK-YKRDSESV---QREGENLQAVWSPDT---KLIAVVTS 87 (827)
Q Consensus 25 v~fspdg~lla~~~~~~v~IW~~~~~~~----------~l~~-~~r~~~s~---~~~G~~~~v~wSPDg---~~lav~t~ 87 (827)
|.+||+|+++|.++...|.|-...++.. .+.+ ..--...+ .....+..+.|+|.+ ..|++-|+
T Consensus 90 i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLts 169 (717)
T PF10168_consen 90 ISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTS 169 (717)
T ss_pred EEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEec
Confidence 6789999999999999888877732111 1111 11111111 112356789999985 89999999
Q ss_pred CcEEEEEEEEec
Q 003356 88 SLYLHIFKVQIT 99 (827)
Q Consensus 88 dg~l~l~~v~~~ 99 (827)
|+++|+||+...
T Consensus 170 dn~lR~y~~~~~ 181 (717)
T PF10168_consen 170 DNTLRLYDISDP 181 (717)
T ss_pred CCEEEEEecCCC
Confidence 999999999643
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=93.13 E-value=17 Score=40.39 Aligned_cols=82 Identities=28% Similarity=0.420 Sum_probs=51.3
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCCCcce-----EEEE-------eec-------C----------C-----CCCCCC
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAESASLI-----RTVS-------LYD-------W----------G-----YSMDDT 307 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~~~~~-----~~l~-------~~~-------~----------~-----~~~~h~ 307 (827)
++|+++..-||+|...|.|.||........- .... ... . + .-....
T Consensus 7 vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~ 86 (395)
T PF08596_consen 7 VSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQ 86 (395)
T ss_dssp EEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S
T ss_pred EEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccC
Confidence 7788887788888888888887765411000 0000 000 0 0 001247
Q ss_pred CCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEE
Q 003356 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 344 (827)
Q Consensus 308 ~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~t 344 (827)
|+|++++.| |=-++|+|+++|.+.|.|+.|...+..
T Consensus 87 g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~ 122 (395)
T PF08596_consen 87 GPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN 122 (395)
T ss_dssp -SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee
Confidence 999999998 555999999999999999999887765
No 357
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.99 E-value=27 Score=42.37 Aligned_cols=77 Identities=14% Similarity=0.264 Sum_probs=48.7
Q ss_pred CCCceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEE-EeChHhhhhcCcccEEEEcCCc------cEEEEEecCcE
Q 003356 19 PSSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKY-KRDSESVQREGENLQAVWSPDT------KLIAVVTSSLY 90 (827)
Q Consensus 19 ~~~~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~-~r~~~s~~~~G~~~~v~wSPDg------~~lav~t~dg~ 90 (827)
|+..+++....+.+.++++ +.+.+.-.-.+ ...+++.+ +|.. -...+.++++.||. +++|+++-|+.
T Consensus 537 P~~~~Iv~~avnr~qiVvalSngelvyfe~d-~sgql~E~~er~t----l~~~vac~ai~~~~~g~krsrfla~a~~d~~ 611 (1205)
T KOG1898|consen 537 PERVRIVKCAVNRRQIVVALSNGELVYFEGD-VSGQLNEFTERVT----LSTDVACLAIGQDPEGEKRSRFLALASVDNM 611 (1205)
T ss_pred CCceEEEEEeecceEEEEEccCCeEEEEEec-cCccceeeeeeee----eceeehhhccCCCCcchhhcceeeeeccccc
Confidence 3455666665555555555 55554333332 44455555 3321 13566788998887 57999999999
Q ss_pred EEEEEEEecC
Q 003356 91 LHIFKVQITE 100 (827)
Q Consensus 91 l~l~~v~~~~ 100 (827)
++++.+....
T Consensus 612 vriisL~p~d 621 (1205)
T KOG1898|consen 612 VRIISLDPSD 621 (1205)
T ss_pred eeEEEecCcc
Confidence 9999997443
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.32 E-value=21 Score=39.52 Aligned_cols=106 Identities=16% Similarity=0.255 Sum_probs=67.0
Q ss_pred EEeCCc-EEEEeeccCccccceeecccee----cCCCCcEEEEEcCCCCEEEEEec---CCeEEEEEcCCCCcceEEEEe
Q 003356 226 LYSNGQ-LMSCSVSKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 226 ~s~dG~-~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~va~sp~~~lla~g~~---dg~v~vw~~~~~~~~~~~l~~ 297 (827)
++++|. +++...++..+...+....... .+. .+.-++++|+++.+.++.. ++++.+.|..+ ...+.+...
T Consensus 81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~~v 158 (381)
T COG3391 81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATIPV 158 (381)
T ss_pred eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEEec
Confidence 445554 6665555555655553322221 222 3444899999977776655 67888877666 555555433
Q ss_pred ecCCCCCCCCCCeEEEEECCCCCEEEEEE-cCCcEEEEeccCCeeE
Q 003356 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLM 342 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spDg~~Lasg~-~Dg~v~vWs~~~~~l~ 342 (827)
-..+ ..++++|+|+.+.+.. .++.+.+.+..+....
T Consensus 159 --------G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 159 --------GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred --------CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 1234 8899999999666555 7789999997665544
No 359
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=91.96 E-value=1.8 Score=38.14 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=48.1
Q ss_pred cEE-EEEcCCC-CEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 259 AVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 259 ~v~-va~sp~~-~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
++| +.|.-|| .-|.+|+.|..||+|+- ...+..+.. ++.|++++-... ..++-|-++|+|.+++-
T Consensus 4 al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~e---------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 4 ALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEITE---------TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred EEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEec---------ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 344 5555554 57889999999999874 345555554 677888887776 56888888899988875
No 360
>PRK02888 nitrous-oxide reductase; Validated
Probab=91.62 E-value=5.7 Score=45.92 Aligned_cols=44 Identities=9% Similarity=0.004 Sum_probs=30.1
Q ss_pred ECCCCCEEEEEEcCCcEEEEeccC-----CeeEEEeccccccceeeeeecCCC
Q 003356 315 WTPDNSAFAVGWKSRGLTVWSVSG-----CRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 315 ~spDg~~Lasg~~Dg~v~vWs~~~-----~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+.+||++...+ +++|.+.|..+ ......+.-. .....+.++||+
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDG 332 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDG 332 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECC--CCccceEECCCC
Confidence 34578876663 57899999987 3455555432 346678899998
No 361
>PRK13616 lipoprotein LpqB; Provisional
Probab=91.31 E-value=9.2 Score=44.85 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=50.6
Q ss_pred EEEEcCCCCEEEEEe------cCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCc-EEE
Q 003356 261 CASIAPEQQILAVGT------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG-LTV 333 (827)
Q Consensus 261 ~va~sp~~~lla~g~------~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~-v~v 333 (827)
..++||+|+.+|.-. .|..-.||-...++.......+ ...+.-.|+|||..|++..+.+. +++
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g----------~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG----------HSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC----------CCCCCceECCCCCceEEEecCcceEEE
Confidence 389999999988766 2444455544332333222222 13677899999998887754212 222
Q ss_pred E-----------eccCCeeEEEeccccccceeeeeecCCC
Q 003356 334 W-----------SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 334 W-----------s~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
. .+.++.... . ....|.++.+|||+
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~-~~g~Issl~wSpDG 459 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---R-VPGPISELQLSRDG 459 (591)
T ss_pred eccCCCceEEEEeccCchhhh---c-cCCCcCeEEECCCC
Confidence 2 333332211 1 12358888899988
No 362
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.30 E-value=12 Score=38.72 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=55.6
Q ss_pred CcEEEEEcCCCCEEEEEe-cCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEe-
Q 003356 258 DAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS- 335 (827)
Q Consensus 258 ~~v~va~sp~~~lla~g~-~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs- 335 (827)
.....++|++++.+|.-. .++.-.||-....+.....+.+ ..+..-+|+++|...++...+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g----------~~l~~PS~d~~g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG----------GSLTRPSWDPDGWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC----------CccccccccCCCCEEEEEcCCCceEEEEe
Confidence 444599999999888766 2333334434431222222222 3577789999999888888777878874
Q ss_pred ccCCe-eEEEecccccc-ceeeeeecCCC
Q 003356 336 VSGCR-LMSTIRQISLS-SISSPIVKPNQ 362 (827)
Q Consensus 336 ~~~~~-l~~tl~~~~~~-~v~s~~~sp~~ 362 (827)
...+. ....+...... .|+++++|||+
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG 123 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDG 123 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCC
Confidence 22222 12222211112 67777888877
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=91.30 E-value=1.9 Score=51.47 Aligned_cols=92 Identities=18% Similarity=0.171 Sum_probs=58.2
Q ss_pred EEEeeccCccccceeeccc-ee--------cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceE-EEEeecCCC
Q 003356 233 MSCSVSKKGLKLAEFIKID-KE--------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDWGY 302 (827)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~-~~--------~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~-~l~~~~~~~ 302 (827)
-++|.++..+..||..-.. ++ .....-.|++-+.+| .||+|+.+|.||+||-- +..-+ .+.+
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~--g~~AKT~lp~----- 616 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL--GKRAKTALPG----- 616 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc--chhhhhcCCC-----
Confidence 3455666666666654321 11 111234455555554 78999999999999842 22222 2323
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 303 ~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
-..||..|..+.||+++++.+. ..+-+.++
T Consensus 617 ---lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 617 ---LGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ---CCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 5679999999999998887776 56666665
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.01 E-value=17 Score=40.98 Aligned_cols=123 Identities=12% Similarity=0.093 Sum_probs=61.3
Q ss_pred cEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCC
Q 003356 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA 289 (827)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~ 289 (827)
...++.|+|..+.+++ ..||.+.+..+.. |... ....+...+|.++++ +|+-..+++|.++.--+ .
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~-----~r~k------~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~-~ 99 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALA-----WRNK------AFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFK-N 99 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTT-----TEEE------EEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTE-E
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccC-----Cccc------ccCceeEEEEecCcc-EEEEECCCeEEEEEcCc-c
Confidence 3556676665554333 5666665544221 1111 112344477887555 67777788999963222 2
Q ss_pred cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
...+.++. ...+..+-. |.+|+..+.+ .|.+||+.+++.++++.-. .|..+.|++++
T Consensus 100 ~~~k~i~~---------~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g 156 (443)
T PF04053_consen 100 EVVKSIKL---------PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDG 156 (443)
T ss_dssp -TT--------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTS
T ss_pred ccceEEcC---------CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCC
Confidence 33333333 223444433 8988888774 8999999999998887632 36677777776
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=90.91 E-value=26 Score=37.72 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=40.0
Q ss_pred ccEEEEEec---------C-cEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEE
Q 003356 79 TKLIAVVTS---------S-LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (827)
Q Consensus 79 g~~lav~t~---------d-g~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~ 148 (827)
..+|+|||+ . |.|.+|++..... .-..+++ -....+ .+.|.++..-+++++++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~------------~~~~l~~--i~~~~~---~g~V~ai~~~~~~lv~~ 104 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPE------------NNFKLKL--IHSTEV---KGPVTAICSFNGRLVVA 104 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----------------EEEE--EEEEEE---SS-EEEEEEETTEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccc------------cceEEEE--EEEEee---cCcceEhhhhCCEEEEe
Confidence 578999985 2 8999999974310 0011111 111112 45788888778885555
Q ss_pred ecCCcEEEEecCCcc
Q 003356 149 LSDGSLYSISWKGEF 163 (827)
Q Consensus 149 t~dg~i~~~~w~~~~ 163 (827)
. ++.+.++.|+...
T Consensus 105 ~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 105 V-GNKLYVYDLDNSK 118 (321)
T ss_dssp E-TTEEEEEEEETTS
T ss_pred e-cCEEEEEEccCcc
Confidence 4 5778888887655
No 366
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.62 E-value=1.4 Score=52.80 Aligned_cols=67 Identities=16% Similarity=0.347 Sum_probs=50.9
Q ss_pred cEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCC---CeEEEEECCCCCEEEEEEcCCcEEEEe
Q 003356 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG---PVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (827)
Q Consensus 259 ~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~---~V~~l~~spDg~~Lasg~~Dg~v~vWs 335 (827)
..+++||.+|++++.|-.+|.|.+||+.. +...+.+.. |.. .|..+.|..++..+.++..-|. +|+
T Consensus 133 Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e--------~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 133 VTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITE--------HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ceeeEecCCCceeccccCCCcEEEEEccC-Ccceeeeee--------cCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 34499999999999999999999999988 777776655 333 3455667777777777766443 776
Q ss_pred c
Q 003356 336 V 336 (827)
Q Consensus 336 ~ 336 (827)
.
T Consensus 202 l 202 (1206)
T KOG2079|consen 202 L 202 (1206)
T ss_pred E
Confidence 5
No 367
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.62 E-value=3.1 Score=50.25 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=48.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEee-CCccceEEEEEEEEEEeCCEEEEEEEeeCC------CcEEEEE
Q 003356 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF-GDITQEQKIQSKGLLWLGKIIVVCNYIDSS------NTYELLF 525 (827)
Q Consensus 454 ~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f-~~~~~e~~~~v~gl~W~~~~li~~~~~~~~------~~~~lrl 525 (827)
..++++|||.|+.+++|-..|++ -|-..-..-+.. +.+..| .+.|.+++|....-.+..|.... ..|+.++
T Consensus 200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-~yrvl~v~Wl~t~eflvvy~n~ts~~~dpd~y~~~~ 278 (1405)
T KOG3630|consen 200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-NYRVLSVTWLSTQEFLVVYGNVTSETDDPDSYDQKM 278 (1405)
T ss_pred ceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-CcceeEEEEecceeEEEEecccccCcCCchhhhhcc
Confidence 47899999999999999999999 776543322222 222223 56788999997744443343222 3455677
Q ss_pred eeCC
Q 003356 526 YPRY 529 (827)
Q Consensus 526 y~~~ 529 (827)
|...
T Consensus 279 ~k~k 282 (1405)
T KOG3630|consen 279 YKIK 282 (1405)
T ss_pred cccc
Confidence 7664
No 368
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=90.60 E-value=0.69 Score=45.81 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=48.0
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCC-CCeEEEEECCCCCEEEEE--EcCCcEEE
Q 003356 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVG--WKSRGLTV 333 (827)
Q Consensus 258 ~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~-~~V~~l~~spDg~~Lasg--~~Dg~v~v 333 (827)
...| +..-.++.+..+|+.||.||.|++.. .+.+..... |+ .++.....+..+..|+++ +.|..++.
T Consensus 103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~--------h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~ 173 (238)
T KOG2444|consen 103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQ--------HNFESGEELIVVGSDEFLKIADTSHDRVLKK 173 (238)
T ss_pred cceeccccccccceeEEeccCCceeeecccc-Cceeeeecc--------ccCCCcceeEEecCCceEEeeccccchhhhh
Confidence 3344 54445667889999999999999876 554443333 66 455555555666666666 66677777
Q ss_pred EeccC
Q 003356 334 WSVSG 338 (827)
Q Consensus 334 Ws~~~ 338 (827)
|++..
T Consensus 174 W~ve~ 178 (238)
T KOG2444|consen 174 WNVEK 178 (238)
T ss_pred cchhh
Confidence 77653
No 369
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=90.11 E-value=25 Score=36.24 Aligned_cols=210 Identities=12% Similarity=0.034 Sum_probs=94.2
Q ss_pred ceEEEEEecce-EEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 003356 22 QQIIYFKVNNG-LLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (827)
Q Consensus 22 ~~vv~fspdg~-lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~ 99 (827)
-+-++++||.+ +||+.. +..|...+. .+..+.... +..+|..-+|++.-++.++++.=.++.|.++++...
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~--~G~vlr~i~-----l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL--DGKVLRRIP-----LDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET--T--EEEEEE------SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC--CCCEEEEEe-----CCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence 35589999854 666664 345544444 444444432 445788889999888866665545888988888533
Q ss_pred CceeecCCCCCCCceeeeEeeEeecccccccccceEE--EeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCc
Q 003356 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (827)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~ 177 (827)
...... .....+++... ...+..+- |..+.++.++++-...-..++.+++...... + .
T Consensus 97 ~~~~~~-------~~~~~~~l~~~-----~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~-~-------~ 156 (248)
T PF06977_consen 97 TTSLDR-------ADVQKISLGFP-----NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD-L-------F 156 (248)
T ss_dssp -TT--E-------EEEEEEE---S--------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS----------E
T ss_pred ccccch-------hhceEEecccc-----cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc-e-------e
Confidence 211000 00111222111 11122222 4444557777776555455565654221000 0 0
Q ss_pred ccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccc-cceeecccee--c
Q 003356 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKE--L 254 (827)
Q Consensus 178 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~-~~~~~~~~~~--~ 254 (827)
......+. .....-..+.++.+++..+.+.+.+..++.++.-..++.+. .+.+..+..- .
T Consensus 157 ~~~~~~~~-----------------~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~ 219 (248)
T PF06977_consen 157 VSDDQDLD-----------------DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSK 219 (248)
T ss_dssp EEE-HHHH------------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS
T ss_pred eccccccc-----------------cccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCccc
Confidence 00000000 00011123667788898888888888888777665565543 3333322100 1
Q ss_pred CCCCcEEEEEcCCCCEEEEEe
Q 003356 255 GSGDAVCASIAPEQQILAVGT 275 (827)
Q Consensus 255 ~h~~~v~va~sp~~~lla~g~ 275 (827)
....+-=++|.++|++.++.-
T Consensus 220 ~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 220 DIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp ---SEEEEEE-TT--EEEEET
T ss_pred ccCCccEEEECCCCCEEEEcC
Confidence 112233388999998776654
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.42 E-value=41 Score=37.67 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=25.7
Q ss_pred eEEEEECCCCCEEEEEE-cCC----cEEEEeccCCeeEE
Q 003356 310 VSCIAWTPDNSAFAVGW-KSR----GLTVWSVSGCRLMS 343 (827)
Q Consensus 310 V~~l~~spDg~~Lasg~-~Dg----~v~vWs~~~~~l~~ 343 (827)
+...++||||+++|-+- ..| .+++.|+.+++.+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~ 164 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP 164 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC
Confidence 44678999999998763 333 49999999986553
No 371
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.29 E-value=30 Score=36.03 Aligned_cols=166 Identities=13% Similarity=0.204 Sum_probs=96.0
Q ss_pred ccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCC
Q 003356 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (827)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~ 288 (827)
..+.++.|++..+.+.++...+..++--...|.+ ...-.+.+-.++-.+++--++++.++--.++++.++.++..
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-----irtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-----IRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCce-----EEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3366777777776666665555555433322221 11111244455555777778888888889999999988873
Q ss_pred CcceEEEEeecC--CCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCc
Q 003356 289 ASLIRTVSLYDW--GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKY 366 (827)
Q Consensus 289 ~~~~~~l~~~~~--~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~ 366 (827)
+..+. +...+. +...+....--.++|.|....|..+-+.+-+.|+.+.+..- .+..| +.-.|.. ..
T Consensus 161 t~~~~-~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~--~l~~~-------~~~~~~~--~~ 228 (316)
T COG3204 161 TTVIS-AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPS--SLSVH-------ASLDPTA--DR 228 (316)
T ss_pred ccEEe-ccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCc--ccccc-------cccCccc--cc
Confidence 33322 111111 11222245678899999999999999888888888874421 11111 0001111 11
Q ss_pred cceeecceeEEEccCCceEEEEecC
Q 003356 367 EPLMSGTSMMQWDEYGYRLYAIEEG 391 (827)
Q Consensus 367 ~~l~sg~~i~~W~~~~~~l~~~~~~ 391 (827)
..++...+...++..++.++....+
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~E 253 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDE 253 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecC
Confidence 3445555677788777777766543
No 372
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=88.79 E-value=18 Score=41.17 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=25.9
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCceE--EEEcCC
Q 003356 450 SQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQ 482 (827)
Q Consensus 450 ~~~~~I~~va~SpdG~~lavag~dg~i--iwd~~t 482 (827)
...+-|.|++|.+||++|++|=...+- +||-.-
T Consensus 153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 456679999999999999988666554 888543
No 373
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.75 E-value=30 Score=35.26 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=59.7
Q ss_pred CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEE-EEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC-IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 268 ~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~-l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
|++++.|+.+|.+.+-+..+ ++....+.. -+.|.+ -...+|+.++-.|+.|++...-|..+..++...+
T Consensus 63 gdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~---------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKT-GSQIWNFVI---------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CCEEEEEEccCcEEEEEecc-hhheeeeee---------hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 67799999999999999988 665555544 223332 3456799999999999999999999888887765
Q ss_pred cccccceeeeeecC
Q 003356 347 QISLSSISSPIVKP 360 (827)
Q Consensus 347 ~~~~~~v~s~~~sp 360 (827)
-.| ....+++..|
T Consensus 133 cgG-~~f~sP~i~~ 145 (354)
T KOG4649|consen 133 CGG-GTFVSPVIAP 145 (354)
T ss_pred cCC-ceeccceecC
Confidence 442 2344445544
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=88.19 E-value=40 Score=39.65 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=59.9
Q ss_pred ccEEEEEEcCCcceEEEEEeCCcEEEEee---ccCccccceeecccee-cCCCCc-EEEEEcCCCCEEEEEecCCeEEEE
Q 003356 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSV---SKKGLKLAEFIKIDKE-LGSGDA-VCASIAPEQQILAVGTRRGVVELY 283 (827)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~---~~~~~~~~~~~~~~~~-~~h~~~-v~va~sp~~~lla~g~~dg~v~vw 283 (827)
..|.++.|+++...++++. +|++++.+. .++..++-+. ..+ .+-... ..++|..+++++ ++..++.-.+|
T Consensus 448 g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~---~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~ 522 (591)
T PRK13616 448 GPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP---REVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVW 522 (591)
T ss_pred CCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc---EEeecccCCccccceEecCCEEE-EEecCCCCceE
Confidence 4588889999888766655 688777433 3343233221 111 222343 448999999865 66666666677
Q ss_pred EcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC
Q 003356 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (827)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg 329 (827)
.+.-.+.....+.. .+...+|.+++=+++ .+.++..++
T Consensus 523 ~v~vDG~~~~~~~~------~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 523 YVNLDGSNSDALPS------RNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred EEecCCccccccCC------CCccCceEEEecCCc--eEEEEcCCc
Confidence 66542322222111 113567788877763 333444444
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=87.12 E-value=41 Score=35.05 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=40.6
Q ss_pred ecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 003356 29 VNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (827)
Q Consensus 29 pdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~ 98 (827)
..++.++.+++++|.+++...+........ ...+..+..-|+-+.+++-+ ||+|.+|++..
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--------~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILK--------LSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEee--------cceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 456677777888899988831222222111 12267888888888887775 49999999864
No 376
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.10 E-value=56 Score=36.54 Aligned_cols=56 Identities=20% Similarity=0.406 Sum_probs=38.5
Q ss_pred EEEcCCCCEEEEEe-cCC----eEEEEEcCCCCcceE-EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC
Q 003356 262 ASIAPEQQILAVGT-RRG----VVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (827)
Q Consensus 262 va~sp~~~lla~g~-~dg----~v~vw~~~~~~~~~~-~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D 328 (827)
.++||+|+++|.+- ..| +++++|+.+ ++.+. .+.. .. -..++|++||+.|+-...|
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~---------~~-~~~~~W~~d~~~~~y~~~~ 190 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIEN---------PK-FSSVSWSDDGKGFFYTRFD 190 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEE---------EE-SEEEEECTTSSEEEEEECS
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCcccc---------cc-cceEEEeCCCCEEEEEEeC
Confidence 68999999999763 334 599999988 65444 3332 11 1349999999987666543
No 377
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.07 E-value=1.8 Score=30.92 Aligned_cols=31 Identities=16% Similarity=0.361 Sum_probs=26.5
Q ss_pred CCeEEEEECCCC---CEEEEEEcCCcEEEEeccC
Q 003356 308 GPVSCIAWTPDN---SAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 308 ~~V~~l~~spDg---~~Lasg~~Dg~v~vWs~~~ 338 (827)
|+|.+|+|||++ .+||-+-.-+.|.|+|+..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999854 4899888889999999974
No 378
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.01 E-value=9 Score=45.85 Aligned_cols=80 Identities=25% Similarity=0.336 Sum_probs=54.9
Q ss_pred cEE-EEEcCCCCEEEEEecCCeEEEEEcCCC---------Cc---ceEEEEeecCCCCCCCCCCeEEEEECCC---CCEE
Q 003356 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAES---------AS---LIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAF 322 (827)
Q Consensus 259 ~v~-va~sp~~~lla~g~~dg~v~vw~~~~~---------~~---~~~~l~~~~~~~~~~h~~~V~~l~~spD---g~~L 322 (827)
.|. +.+||+|+++|..+..|.+.+. +... ++ ..+++.....-+..++...|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~-LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLE-LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEE-eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 455 9999999999999988755442 2210 11 1123332222233456778999999996 5899
Q ss_pred EEEEcCCcEEEEeccCC
Q 003356 323 AVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 323 asg~~Dg~v~vWs~~~~ 339 (827)
++=..|+++|+||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 99999999999999643
No 379
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.81 E-value=46 Score=36.68 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=48.5
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCcc-ceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEee
Q 003356 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDIT-QEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYP 527 (827)
Q Consensus 450 ~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~-~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~ 527 (827)
...++|+++.||+|.+.+|+--.+..+ .++.....-+...+.. +.....+.|++|..+.-++- . .+..+.+|.
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~--i---~~~G~e~y~ 138 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAF--I---TDQGIEFYQ 138 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEE--E---ecCCeEEEE
Confidence 455799999999999999999999999 8887433222222221 22333478999987644332 2 223455666
Q ss_pred CC
Q 003356 528 RY 529 (827)
Q Consensus 528 ~~ 529 (827)
..
T Consensus 139 v~ 140 (657)
T KOG2377|consen 139 VL 140 (657)
T ss_pred Ec
Confidence 54
No 380
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.41 E-value=25 Score=41.10 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=89.9
Q ss_pred eEEEeecCC-CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEE
Q 003356 134 SVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAII 212 (827)
Q Consensus 134 ~v~~~~~d~-~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (827)
.+..+..+. +.|++-+++|.++++.|-|+...... .+. ......|.
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~s-----------------vg~----------------e~~~~~I~ 131 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNS-----------------VGF----------------ESQMSDIV 131 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhcccc-----------------ccc----------------ccccCcee
Confidence 445665555 67889999999999999887654321 000 01112233
Q ss_pred EEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceecCC-CCcEE-EEEcCCCCE---EEEEecCCeEEEEEcCC
Q 003356 213 WLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGS-GDAVC-ASIAPEQQI---LAVGTRRGVVELYDLAE 287 (827)
Q Consensus 213 ~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~-va~sp~~~l---la~g~~dg~v~vw~~~~ 287 (827)
...+.. ++.++.+.+|+++...... ..+.|....- ++. ....| ..+-|.... +.+.-..|- .++.+..
T Consensus 132 ec~~f~--~GVavlt~~g~v~~i~~~~-~~~~~~~~di---P~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~-~~~q~~~ 204 (829)
T KOG2280|consen 132 ECRFFH--NGVAVLTVSGQVILINGVE-EPKLRKMPDI---PYNELPKSCWTVFQPHRQSTILLDVDVAVGL-HICQVEE 204 (829)
T ss_pred EEEEec--CceEEEecCCcEEEEcCCC-cchhhhCCCC---CCccCCCcceeEecCCCcceeEEeechhhhh-cccceec
Confidence 332222 7778888899988765432 3334443321 111 11234 344443221 222111111 1222222
Q ss_pred CCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
.......+. + -.+.+..|+.||+.++||-=..+|.+.+-+..-.++.+++.
T Consensus 205 ~~~q~~~~~-------~-~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 205 SRVQLHALS-------W-PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ccccccccC-------C-CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 111111111 1 13568889999999999998888999888888777777664
No 381
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=86.12 E-value=90 Score=37.95 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=50.0
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCC-EEEEEEcCCcEEEEeccCCe
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~-~Lasg~~Dg~v~vWs~~~~~ 340 (827)
..|--|..+|.++..||.+..|.++.........+.... -+.|+.-=.|+..++ .+++.+ |+-.-+|+-.+..
T Consensus 589 ~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l-----Gt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n~kL 662 (1096)
T KOG1897|consen 589 TTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTL-----GTQPISLRTFSSKSRTAVFALS-DRPTVIYSSNGKL 662 (1096)
T ss_pred EEeeccceEEEEEcCCceEEEEEEEcccceEcccccccc-----CCCCcEEEEEeeCCceEEEEeC-CCCEEEEecCCcE
Confidence 556566889999999999998887763333322221111 256777777877555 455444 5778888877766
Q ss_pred eEEEe
Q 003356 341 LMSTI 345 (827)
Q Consensus 341 l~~tl 345 (827)
++..+
T Consensus 663 v~spl 667 (1096)
T KOG1897|consen 663 VYSPL 667 (1096)
T ss_pred EEecc
Confidence 55443
No 382
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.09 E-value=55 Score=35.46 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=37.4
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEE
Q 003356 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 267 ~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
+|.+++.....+.|....+++.++....-.. ..+..+.+..+++.|||.+.++...+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEF-----LGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEE-----CTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEc-----cccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4556666666677777777652232211111 012455899999999999998888888763
No 383
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.88 E-value=1.7 Score=46.48 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=48.4
Q ss_pred CCCCCCCCeEEEEECCCCC-EEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 302 YSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 302 ~~~~h~~~V~~l~~spDg~-~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+.+.|...|..++|||... +|..++.+++|+|.|+.+...+.+...+ +.+++++|.-+.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde 247 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDE 247 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCC
Confidence 4445888999999999888 7888999999999999999888777665 567777776665
No 384
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=85.33 E-value=55 Score=39.87 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=46.9
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEE-----------EeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCc
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTV-----------SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l-----------~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~ 330 (827)
+....-+..++....||+|.++|-.+ .+.+... +..+.++...+-.++..++|||.+..++.-..||.
T Consensus 265 i~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~ 343 (753)
T PF11635_consen 265 ITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGK 343 (753)
T ss_pred EEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCC
Confidence 55555567899999999999999766 3222211 11122232233335667999999999999999888
Q ss_pred EE
Q 003356 331 LT 332 (827)
Q Consensus 331 v~ 332 (827)
+.
T Consensus 344 ~~ 345 (753)
T PF11635_consen 344 TK 345 (753)
T ss_pred ce
Confidence 66
No 385
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.70 E-value=6.8 Score=47.51 Aligned_cols=103 Identities=12% Similarity=0.029 Sum_probs=59.4
Q ss_pred cEEEEEEcCCc-ceEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCC
Q 003356 210 AIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (827)
Q Consensus 210 ~i~~i~~~~~~-~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~ 288 (827)
...++.|.+.. ...++...|+.+.+....- ..+ .... ..--...+|++|+|+|+.++.|-.+|++.-|.-.
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~-~~~--~v~s---~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-- 228 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ-LAQ--NVTS---FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-- 228 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhh-hhh--hhcc---cCcccceeeEEeccccceeeEecCCCeEEEeecc--
Confidence 34455666654 3445666777765532111 000 0000 1122345679999999999999999999887643
Q ss_pred CcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEE
Q 003356 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (827)
Q Consensus 289 ~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Las 324 (827)
.+..+.+... +.. ....|.+|+|-..-.+|++
T Consensus 229 leik~~ip~P--p~~--e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 229 LEIKSEIPEP--PVE--ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cceeecccCC--CcC--CCcceeEEEEecceeEEEE
Confidence 3333333331 111 2578999999876555544
No 386
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=84.67 E-value=54 Score=34.14 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=45.6
Q ss_pred CCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC
Q 003356 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 266 p~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~ 339 (827)
..++.|++|+.+| +.+|+........+..+ ..+|..+...|+-+.|++-++ +.+.++++..-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----------~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l 66 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK----------LSSITQLSVLPELNLLLVLSD-GQLYVYDLDSL 66 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee----------cceEEEEEEecccCEEEEEcC-CccEEEEchhh
Confidence 3678999999999 89999844233333332 344999999998777776654 99999998654
No 387
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=83.90 E-value=3 Score=41.43 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=50.2
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEE-EEECCCCCEEEEEEcCCcEEEEeccCCeeEEEe
Q 003356 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC-IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (827)
Q Consensus 267 ~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~-l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl 345 (827)
-++-+++|+.+|.|.+|+....+........ -...|-+ +.-..++.+..++..||.|+-|++.-++.+...
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s--------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS--------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc--------ccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 3567899999999999998754433322221 1222322 333446778889999999999999888776665
Q ss_pred ccc
Q 003356 346 RQI 348 (827)
Q Consensus 346 ~~~ 348 (827)
.+|
T Consensus 141 g~h 143 (238)
T KOG2444|consen 141 GQH 143 (238)
T ss_pred ccc
Confidence 555
No 388
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=83.27 E-value=1.1e+02 Score=38.54 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=18.5
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEE
Q 003356 303 SMDDTGPVSCIAWTPDNSAFAVGW 326 (827)
Q Consensus 303 ~~~h~~~V~~l~~spDg~~Lasg~ 326 (827)
+.+|-....++|.+|||...++-.
T Consensus 657 t~A~lnsp~alaVsPdg~v~IAD~ 680 (1899)
T KOG4659|consen 657 TQAKLNSPYALAVSPDGDVIIADS 680 (1899)
T ss_pred hccccCCcceEEECCCCcEEEecC
Confidence 345777889999999999776543
No 389
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.18 E-value=52 Score=38.66 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEE
Q 003356 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (827)
Q Consensus 256 h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~ 296 (827)
|+..+.+++||+.++||--..+|.|.+-+++. .+....+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccC
Confidence 55666699999999999999999999877765 44444444
No 390
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=82.93 E-value=3.8 Score=29.31 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=25.9
Q ss_pred CcEEEEEEcCC-C--CEEEEEeCCceE-EEEcCC
Q 003356 453 WPVQHVAASKD-G--MFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 453 ~~I~~va~Spd-G--~~lavag~dg~i-iwd~~t 482 (827)
+.||++.|||+ + ..||.+-..|.+ ++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 35899999985 4 599999999999 999976
No 391
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.48 E-value=85 Score=34.73 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC
Q 003356 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 306 h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~ 339 (827)
..|+|.++.||+|.+.||+--.|++|.+.+..+.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 5789999999999999999999999999988554
No 392
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.28 E-value=4.8 Score=39.03 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=25.9
Q ss_pred CcccEEEEcCCcc------EEEEEecCcEEEEEEEEe
Q 003356 68 GENLQAVWSPDTK------LIAVVTSSLYLHIFKVQI 98 (827)
Q Consensus 68 G~~~~v~wSPDg~------~lav~t~dg~l~l~~v~~ 98 (827)
+.+++++|||-|- .||+.|++|.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3678899999663 799999999999999753
No 393
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=82.06 E-value=88 Score=34.63 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=51.6
Q ss_pred EEEEEcCCCCEEEEEecC---CeEEEEEcCCCCcceEE-EEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc-CCcEEEE
Q 003356 260 VCASIAPEQQILAVGTRR---GVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVW 334 (827)
Q Consensus 260 v~va~sp~~~lla~g~~d---g~v~vw~~~~~~~~~~~-l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~-Dg~v~vW 334 (827)
-.++++|+|..+.+.... +++...|... +..... ... -++.-..+..+|+|..+-+... .+++.+-
T Consensus 210 ~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~--------~~~~~~~v~~~p~g~~~yv~~~~~~~V~vi 280 (381)
T COG3391 210 AGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPV--------GSGAPRGVAVDPAGKAAYVANSQGGTVSVI 280 (381)
T ss_pred ceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEecccc--------ccCCCCceeECCCCCEEEEEecCCCeEEEE
Confidence 348999999966665544 4888877766 333332 111 1113466899999998877744 4788888
Q ss_pred eccCCeeEEEec
Q 003356 335 SVSGCRLMSTIR 346 (827)
Q Consensus 335 s~~~~~l~~tl~ 346 (827)
|..+.....+..
T Consensus 281 d~~~~~v~~~~~ 292 (381)
T COG3391 281 DGATDRVVKTGP 292 (381)
T ss_pred eCCCCceeeeec
Confidence 888877666544
No 394
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.29 E-value=68 Score=32.81 Aligned_cols=19 Identities=32% Similarity=0.551 Sum_probs=15.5
Q ss_pred CCeEEEEecCCcEEEEecC
Q 003356 142 NKHMLLGLSDGSLYSISWK 160 (827)
Q Consensus 142 ~~~llv~t~dg~i~~~~w~ 160 (827)
++.+++|+.+|.++.+...
T Consensus 63 gdfVV~GCy~g~lYfl~~~ 81 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVK 81 (354)
T ss_pred CCEEEEEEccCcEEEEEec
Confidence 6779999999998876554
No 395
>PHA02713 hypothetical protein; Provisional
Probab=80.89 E-value=23 Score=41.50 Aligned_cols=27 Identities=11% Similarity=0.340 Sum_probs=24.0
Q ss_pred CCCEEEEEeCCc--eE-EEEcCCCeEEeeC
Q 003356 463 DGMFLAVAGLHG--LI-LYDIRQKKWRVFG 489 (827)
Q Consensus 463 dG~~lavag~dg--~i-iwd~~t~~w~~f~ 489 (827)
+|+..++||.+| .+ .||+.|++|..+.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchh
Confidence 889999999999 77 9999999998654
No 396
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=79.83 E-value=18 Score=42.31 Aligned_cols=83 Identities=19% Similarity=0.358 Sum_probs=54.4
Q ss_pred ccCceeecCCCCCCCCCceEEEEEecceEEEEE--ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEc--CCcc
Q 003356 5 YGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIA--SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWS--PDTK 80 (827)
Q Consensus 5 ~gwp~~~~~~~~~~~~~~~vv~fspdg~lla~~--~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wS--PDg~ 80 (827)
++|-+..-..++- ...+.|..|.-++. |++ +..++.|||.+ .+. ..++ +.+.+.+.+.++.|. |||+
T Consensus 17 ~~w~~t~~~~T~i--~~~~li~gss~~k~-a~V~~~~~~LtIWD~~-~~~--lE~~---~~f~~~~~I~dLDWtst~d~q 87 (631)
T PF12234_consen 17 IEWLLTSTFETGI--SNPSLISGSSIKKI-AVVDSSRSELTIWDTR-SGV--LEYE---ESFSEDDPIRDLDWTSTPDGQ 87 (631)
T ss_pred EEEEEEEEEecCC--CCcceEeecccCcE-EEEECCCCEEEEEEcC-CcE--EEEe---eeecCCCceeeceeeecCCCC
Confidence 4566665555541 23345666665544 444 45689999995 544 2222 334567899999885 9999
Q ss_pred EEEEEecCcEEEEEEE
Q 003356 81 LIAVVTSSLYLHIFKV 96 (827)
Q Consensus 81 ~lav~t~dg~l~l~~v 96 (827)
.+...+-.++|.+|.-
T Consensus 88 siLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 88 SILAVGFPHHVLLYTQ 103 (631)
T ss_pred EEEEEEcCcEEEEEEc
Confidence 8888778889999864
No 397
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=79.75 E-value=23 Score=42.67 Aligned_cols=143 Identities=10% Similarity=0.061 Sum_probs=85.5
Q ss_pred CCCEEEEE-EcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCC-CCccceeecc---eeEEEccCCc--eEEEEec
Q 003356 318 DNSAFAVG-WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD-CKYEPLMSGT---SMMQWDEYGY--RLYAIEE 390 (827)
Q Consensus 318 Dg~~Lasg-~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~-~~~~~l~sg~---~i~~W~~~~~--~l~~~~~ 390 (827)
|-++|... ...+.+.-.|+..|+.+....-+....|..++-..-.+ .+.+....|. .+..||++-. .++. .+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-SQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee-cc
Confidence 34444433 35578888999999998888766433344443221111 1112222232 7778988632 2321 11
Q ss_pred CC----cceEEEEec--ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCC
Q 003356 391 GS----SERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (827)
Q Consensus 391 ~~----~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG 464 (827)
.+ .....++.. ...+|.|+.+|.+++++-.. .. .-+.+.+-..||..+.++.||
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g-~~-------------------AKT~lp~lG~pI~~iDvt~DG 630 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLG-KR-------------------AKTALPGLGDPIIGIDVTADG 630 (794)
T ss_pred ccccccCCCceEEEecCCceEEEEeCCCcEEeecccc-hh-------------------hhhcCCCCCCCeeEEEecCCC
Confidence 11 122333333 55788899999999887321 11 012233446799999999999
Q ss_pred CEEEEEeCCceEEEEcC
Q 003356 465 MFLAVAGLHGLILYDIR 481 (827)
Q Consensus 465 ~~lavag~dg~iiwd~~ 481 (827)
++|...++.-++++++.
T Consensus 631 kwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 631 KWILATCKTYLLLIDTL 647 (794)
T ss_pred cEEEEeecceEEEEEEe
Confidence 99999998888888763
No 398
>PRK10115 protease 2; Provisional
Probab=79.45 E-value=1.5e+02 Score=35.72 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=40.2
Q ss_pred EEEcCCCCEEEEEecC-----CeEEEEEcCCCCcceE-EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC------
Q 003356 262 ASIAPEQQILAVGTRR-----GVVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR------ 329 (827)
Q Consensus 262 va~sp~~~lla~g~~d-----g~v~vw~~~~~~~~~~-~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg------ 329 (827)
+.+||||++||.+... -++++-|+.+ +..+. .+. .. -..++|++||+.|+-...+.
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-g~~l~~~i~---------~~--~~~~~w~~D~~~~~y~~~~~~~~~~~ 199 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLET-GNWYPELLD---------NV--EPSFVWANDSWTFYYVRKHPVTLLPY 199 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCC-CCCCCcccc---------Cc--ceEEEEeeCCCEEEEEEecCCCCCCC
Confidence 7889999999976432 3577777765 43221 111 11 14699999998777665432
Q ss_pred cEEEEeccCC
Q 003356 330 GLTVWSVSGC 339 (827)
Q Consensus 330 ~v~vWs~~~~ 339 (827)
.|..+++.++
T Consensus 200 ~v~~h~lgt~ 209 (686)
T PRK10115 200 QVWRHTIGTP 209 (686)
T ss_pred EEEEEECCCC
Confidence 3444555444
No 399
>PRK13684 Ycf48-like protein; Provisional
Probab=79.39 E-value=81 Score=34.20 Aligned_cols=117 Identities=10% Similarity=0.082 Sum_probs=63.1
Q ss_pred cEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 259 ~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
.+. +++.|++.++++|. .|.+.. ..++.++....... .-...++++.+.|+|+.+++|.. |.+++=+..
T Consensus 174 ~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~~~-------~~~~~l~~i~~~~~g~~~~vg~~-G~~~~~s~d 243 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPHQR-------NSSRRLQSMGFQPDGNLWMLARG-GQIRFNDPD 243 (334)
T ss_pred eEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEeeC-------CCcccceeeeEcCCCCEEEEecC-CEEEEccCC
Confidence 344 88899988887765 454432 12231232332222 13467899999999998887654 555432455
Q ss_pred CCeeEEEeccc---cccceeeeeecCCCCCCccceeecc-eeEEEccCCceEEEEe
Q 003356 338 GCRLMSTIRQI---SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE 389 (827)
Q Consensus 338 ~~~l~~tl~~~---~~~~v~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~ 389 (827)
++......... ....+.++.+.|++ ..++.|. -.+....++++-|...
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~----~~~~~G~~G~v~~S~d~G~tW~~~ 295 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPG----EIWAGGGNGTLLVSKDGGKTWEKD 295 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCC----CEEEEcCCCeEEEeCCCCCCCeEC
Confidence 55543322211 11235666777765 5555544 2333444555555443
No 400
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=78.39 E-value=18 Score=37.50 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=42.3
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEc-CCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc---CCcEEEEec
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDL-AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLTVWSV 336 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~-~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~---Dg~v~vWs~ 336 (827)
-+|++++.+.++...+...+++.. .+.......+... .-.+.|..+++||||..+|.-.. ++.|.|=-+
T Consensus 71 PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 71 PSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWP------GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred ccccCCCCEEEEEcCCCceEEEEecCCCcceeEEeccc------ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 789999888888777777777642 2211111122210 01228999999999999887663 244444433
No 401
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=78.00 E-value=1e+02 Score=32.95 Aligned_cols=90 Identities=16% Similarity=0.229 Sum_probs=53.0
Q ss_pred EEEcCCCCEEEEEec-CCeEEEEEcCCCCcce---EEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC-cEEEEec
Q 003356 262 ASIAPEQQILAVGTR-RGVVELYDLAESASLI---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWSV 336 (827)
Q Consensus 262 va~sp~~~lla~g~~-dg~v~vw~~~~~~~~~---~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg-~v~vWs~ 336 (827)
++||||++.+...-. .+.|.-|+++.....+ +.... .....|.--.++.-.||++-+++..+| .|.+|+.
T Consensus 168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-----~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-----FDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE-----ccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 899999987777655 4788888776211111 10110 011345566677788888775544444 8999999
Q ss_pred cCCeeEEEeccccccceeeeee
Q 003356 337 SGCRLMSTIRQISLSSISSPIV 358 (827)
Q Consensus 337 ~~~~l~~tl~~~~~~~v~s~~~ 358 (827)
. ++++..+.-. ...+++++|
T Consensus 243 d-G~l~~~i~lP-~~~~t~~~F 262 (307)
T COG3386 243 D-GKLLGEIKLP-VKRPTNPAF 262 (307)
T ss_pred C-CcEEEEEECC-CCCCccceE
Confidence 8 5566555433 123444444
No 402
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=77.93 E-value=1.7e+02 Score=35.56 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=42.1
Q ss_pred CCEEEEEecCCeEEEEEcCCCCcceEEEEee---cCCCCCC-CCCCeEEEEECC--CCCEEEEEEc----------CCcE
Q 003356 268 QQILAVGTRRGVVELYDLAESASLIRTVSLY---DWGYSMD-DTGPVSCIAWTP--DNSAFAVGWK----------SRGL 331 (827)
Q Consensus 268 ~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~---~~~~~~~-h~~~V~~l~~sp--Dg~~Lasg~~----------Dg~v 331 (827)
+..|..++.|+.+.-.|.++ ++....+... ++....+ ....-..+.-+| .+..+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~T-Gk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADT-GKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCC-CCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 44777888899888888877 5555433210 0000000 000001122223 1334555532 5789
Q ss_pred EEEeccCCeeEEEec
Q 003356 332 TVWSVSGCRLMSTIR 346 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~ 346 (827)
+-+|+.+|++.....
T Consensus 339 ~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 339 RAFDVNTGALVWAWD 353 (764)
T ss_pred EEEECCCCcEeeEEe
Confidence 999999999887654
No 403
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=77.63 E-value=3.9 Score=28.33 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=19.1
Q ss_pred cCcccEEEEcCCccEEEEEecC---cEEEEE
Q 003356 67 EGENLQAVWSPDTKLIAVVTSS---LYLHIF 94 (827)
Q Consensus 67 ~G~~~~v~wSPDg~~lav~t~d---g~l~l~ 94 (827)
.+......|||||+.|+-++.. |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3556789999999988877644 444444
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=77.29 E-value=1.1e+02 Score=36.02 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=41.9
Q ss_pred EEEcCCCCEEEEEeCCc------eE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCC-EEEEEEEeeCCCcEEEEEeeC
Q 003356 458 VAASKDGMFLAVAGLHG------LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYELLFYPR 528 (827)
Q Consensus 458 va~SpdG~~lavag~dg------~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~-~li~~~~~~~~~~~~lrly~~ 528 (827)
.+..-+|+..++||.+| .+ .||..+++|+....-...+ .-.+++-.++ ++++|+.++......+..|..
T Consensus 422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R--~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR--SGFGVAVLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc--ccceEEEECCEEEEECCccCCCccceEEEEcC
Confidence 34456888888998654 45 8999999999764333222 1224555554 556665555333444555655
No 405
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=76.83 E-value=1.1e+02 Score=32.77 Aligned_cols=177 Identities=14% Similarity=0.072 Sum_probs=89.5
Q ss_pred CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC----CCEEEEEEc----------CCcEEEEeccCC----
Q 003356 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD----NSAFAVGWK----------SRGLTVWSVSGC---- 339 (827)
Q Consensus 278 g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD----g~~Lasg~~----------Dg~v~vWs~~~~---- 339 (827)
+.|++.|-.+ .+.+.++...+ .++.-.+..+.+..+ -.+|++|.. .|.+.++++...
T Consensus 2 s~i~l~d~~~-~~~~~~~~l~~----~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~ 76 (321)
T PF03178_consen 2 SSIRLVDPTT-FEVLDSFELEP----NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN 76 (321)
T ss_dssp -EEEEEETTT-SSEEEEEEEET----TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred cEEEEEeCCC-CeEEEEEECCC----CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc
Confidence 3578877766 45555444421 012223444555543 457777753 278999999874
Q ss_pred -eeEEEeccccccceeeeeecCCCCCCccc-eeecceeEEEccCCce-EEEEecC-CcceEEEEec-ceeeeecccCCCe
Q 003356 340 -RLMSTIRQISLSSISSPIVKPNQDCKYEP-LMSGTSMMQWDEYGYR-LYAIEEG-SSERVLIFSF-GKCCLNRGVSGMT 414 (827)
Q Consensus 340 -~l~~tl~~~~~~~v~s~~~sp~~~~~~~~-l~sg~~i~~W~~~~~~-l~~~~~~-~~~~v~~~~~-~~~~~s~~~d~~~ 414 (827)
++.........+.|.+++.- .+ .. ...|..+.+|+.+..+ +.....- ....+..+.. +..++.|..-..+
T Consensus 77 ~~l~~i~~~~~~g~V~ai~~~-~~----~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 77 FKLKLIHSTEVKGPVTAICSF-NG----RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSV 151 (321)
T ss_dssp -EEEEEEEEEESS-EEEEEEE-TT----EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSE
T ss_pred eEEEEEEEEeecCcceEhhhh-CC----EEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCE
Confidence 22211111113567777644 22 32 2333477788777666 5443221 1223444444 4555555544555
Q ss_pred eeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcC
Q 003356 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (827)
Q Consensus 415 ~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~ 481 (827)
.+........++.... . ....-.+.++.|-+|++.++++..+|.+ ++...
T Consensus 152 ~~~~~~~~~~~l~~va---------------~--d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVA---------------R--DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEE---------------E--ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEE---------------e--cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 4443322111111110 1 1112347888888777899999999988 77664
No 406
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=75.98 E-value=7.5 Score=43.14 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=57.3
Q ss_pred EEEEcCCCCEEEEEecCCeEEE---EEcCCCC--cc--eEEEEeecCCCCCCCCCCeEEEEEC-----------CCCCEE
Q 003356 261 CASIAPEQQILAVGTRRGVVEL---YDLAESA--SL--IRTVSLYDWGYSMDDTGPVSCIAWT-----------PDNSAF 322 (827)
Q Consensus 261 ~va~sp~~~lla~g~~dg~v~v---w~~~~~~--~~--~~~l~~~~~~~~~~h~~~V~~l~~s-----------pDg~~L 322 (827)
.++.+|++++||.+..+..+.+ |+....+ .. .....+. ...+....|+++.|- ||..++
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~---l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I 82 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGP---LDDEPGECITSILCLPLSSQKRSTGGPDWTCI 82 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeee---ccCCCCCEEEEEEEEEeecccccCCCCCcEEE
Confidence 3788999999999988876665 5442211 11 1122220 010111456655543 567899
Q ss_pred EEEEcCCcEEEEeccCCeeEEEeccccccceeeeeec
Q 003356 323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (827)
Q Consensus 323 asg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~s 359 (827)
|+|..+|.|++++..|..++..+- | .++|..+...
T Consensus 83 ~VG~ssG~vrfyte~G~LL~~Q~~-h-~~pV~~ik~~ 117 (415)
T PF14655_consen 83 AVGTSSGYVRFYTENGVLLLSQLL-H-EEPVLKIKCR 117 (415)
T ss_pred EEEecccEEEEEeccchHHHHHhc-C-ccceEEEEec
Confidence 999999999999998766554432 2 4566666543
No 407
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.71 E-value=17 Score=40.64 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=42.1
Q ss_pred CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 268 ~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
.-+||+|+.+|.||+||--. .+....+.+ -..+|+.+..+.||++|+..++ ..+-+-++
T Consensus 441 sG~IvvgS~~GdIRLYdri~-~~AKTAlPg--------LG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 441 SGYIVVGSLKGDIRLYDRIG-RRAKTALPG--------LGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred CceEEEeecCCcEEeehhhh-hhhhhcccc--------cCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 34899999999999999632 222223444 5678999999999998876665 45555444
No 408
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=75.39 E-value=13 Score=43.62 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=29.7
Q ss_pred CCCeEEEEECC----CCCEEEEEEcCCcEEEEeccCCeeEEEe
Q 003356 307 TGPVSCIAWTP----DNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (827)
Q Consensus 307 ~~~V~~l~~sp----Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl 345 (827)
.+.+.+++.++ +..+|++-+.|+++|+||+.+++++.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 214 SSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ---EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 34566777777 7789999999999999999999987665
No 409
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.17 E-value=83 Score=35.51 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=88.3
Q ss_pred EEEECCCCCE-EEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCC----ccceeecc--eeEEEccCC--
Q 003356 312 CIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK----YEPLMSGT--SMMQWDEYG-- 382 (827)
Q Consensus 312 ~l~~spDg~~-Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~----~~~l~sg~--~i~~W~~~~-- 382 (827)
.|-...|.++ |.++....++.=-|+..|+.+.+..-+ ..|+-+.+.|+.... ...++.=+ .+.-||++-
T Consensus 338 ~mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~--~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~ 415 (644)
T KOG2395|consen 338 AMLHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFE--DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG 415 (644)
T ss_pred hhhhccccceEeeCCCCcCcceeeecccceeeeEeecc--CCcceeeccCCcchhcccccccEEeecCCceEEecccccC
Confidence 3444455554 445666678888899999988887665 236666777766311 01222111 677788752
Q ss_pred ceEEEEecCCc----ceEEEEec--ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEE
Q 003356 383 YRLYAIEEGSS----ERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (827)
Q Consensus 383 ~~l~~~~~~~~----~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~ 456 (827)
...+...++++ ....++.. ..+++.||.+|.+++++-. +.. .-+.+.+-..+|.
T Consensus 416 ~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri-~~~-------------------AKTAlPgLG~~I~ 475 (644)
T KOG2395|consen 416 KNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRI-GRR-------------------AKTALPGLGDAIK 475 (644)
T ss_pred cceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhh-hhh-------------------hhhcccccCCcee
Confidence 21222323322 11223322 4577888888888887742 111 0233445567899
Q ss_pred EEEEcCCCCEEEEEeCCceEEEEc
Q 003356 457 HVAASKDGMFLAVAGLHGLILYDI 480 (827)
Q Consensus 457 ~va~SpdG~~lavag~dg~iiwd~ 480 (827)
.+..+.||++|...+..-+++-++
T Consensus 476 hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 476 HVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred eEEeeccCcEEEEecccEEEEEEE
Confidence 999999999998888776666554
No 410
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=74.31 E-value=1.6e+02 Score=33.34 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=36.8
Q ss_pred EEEEecceEEEEEc-cCeEEEeecCCcee--EEEEEEeChHhhhhcCcccEEEEcCCc------cEEEEEe
Q 003356 25 IYFKVNNGLLLIAS-PCHIELWSSSQHKV--RLGKYKRDSESVQREGENLQAVWSPDT------KLIAVVT 86 (827)
Q Consensus 25 v~fspdg~lla~~~-~~~v~IW~~~~~~~--~l~~~~r~~~s~~~~G~~~~v~wSPDg------~~lav~t 86 (827)
++|.|||++|++-. .++|++++.. ... .+..+... ..-...|....|+++||= .+|++..
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~-~~~~~~~~~l~~v-~~~~ge~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPE-TGEVKVVFTLPEI-VNDAQHNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCC-CCceeeeecCCce-eccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence 68999999998886 5899888753 221 12111100 000125667899999984 3566653
No 411
>PHA03098 kelch-like protein; Provisional
Probab=73.39 E-value=99 Score=35.97 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=22.4
Q ss_pred CCCEEEEEeCC-----ceE-EEEcCCCeEEeeCC
Q 003356 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFGD 490 (827)
Q Consensus 463 dG~~lavag~d-----g~i-iwd~~t~~w~~f~~ 490 (827)
+|+.++.||.+ ..+ .||..+++|..+..
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 77888888865 467 99999999998754
No 412
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=72.89 E-value=32 Score=40.31 Aligned_cols=104 Identities=17% Similarity=0.141 Sum_probs=64.2
Q ss_pred EEeCCcEEEEeeccCccccceeecccee----cCCCCcEE-EEE--cCCCCEEEEEecCCeEEEEEcCCC-----C---c
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASI--APEQQILAVGTRRGVVELYDLAES-----A---S 290 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~-va~--sp~~~lla~g~~dg~v~vw~~~~~-----~---~ 290 (827)
.++-+++.++..+..++.+||...+... ....+.+. +.| .|+++.+.+-+....|.+|.-..+ + .
T Consensus 37 gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 37 GSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred ecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 4455666666555566778887755422 12244555 666 478887777777888888754210 1 2
Q ss_pred ceEEEEeecCCCCCCCC-CCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 291 LIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 291 ~~~~l~~~~~~~~~~h~-~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
.++.+...+ |+ .+|.+..|.+||.+++.++ +.+.|++-.
T Consensus 117 ~i~~i~i~~------~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 117 PIRKIDISS------HTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred eeEEEEeec------CCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 233333321 44 5899999999998776554 578887653
No 413
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=72.08 E-value=1.4e+02 Score=32.38 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=16.6
Q ss_pred cceeecc---eeEEEccCCceEEEEecC
Q 003356 367 EPLMSGT---SMMQWDEYGYRLYAIEEG 391 (827)
Q Consensus 367 ~~l~sg~---~i~~W~~~~~~l~~~~~~ 391 (827)
+.++.|. .-+.|++.++++|..-.+
T Consensus 174 ~i~A~GlRN~~~~~~d~~tg~l~~~d~G 201 (331)
T PF07995_consen 174 EIYAYGLRNPFGLAFDPNTGRLWAADNG 201 (331)
T ss_dssp TEEEE--SEEEEEEEETTTTEEEEEEE-
T ss_pred EEEEeCCCccccEEEECCCCcEEEEccC
Confidence 6667776 567888888888877544
No 414
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=71.78 E-value=23 Score=38.78 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=26.1
Q ss_pred CcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 68 G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
..+..+...|||+.+++-+. +.+.+|++.+..
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~ 252 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRS 252 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccc
Confidence 44556789999999999987 689999997543
No 415
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=71.35 E-value=11 Score=26.03 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=16.7
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCC
Q 003356 450 SQNWPVQHVAASKDGMFLAVAGLH 473 (827)
Q Consensus 450 ~~~~~I~~va~SpdG~~lavag~d 473 (827)
.....-...+|||||++|+-++..
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred cCCccccCEEEecCCCEEEEEecC
Confidence 344567789999999988876654
No 416
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=69.35 E-value=1.9e+02 Score=32.22 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=49.5
Q ss_pred cceeEEEccCCceEEEEecCCc-ce-EEEEec----ce-eeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceE---EE
Q 003356 372 GTSMMQWDEYGYRLYAIEEGSS-ER-VLIFSF----GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI---LH 441 (827)
Q Consensus 372 g~~i~~W~~~~~~l~~~~~~~~-~~-v~~~~~----~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w---~~ 441 (827)
|.++.+|+....++.+++.-.. +. .+.++| .+ .-.+++. -+-.+|.+...++ -.| ..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~------------g~W~a~kV 287 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDD------------GEWAAEKV 287 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ET------------TEEEEEEE
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe-ccceEEEEEEcCC------------CCeeeeEE
Confidence 3488999999999998875433 22 255555 11 2222222 2334454444222 246 34
Q ss_pred eeeceeeccC-------------CCcEEEEEEcCCCCEEEEEeC-CceE-EEEcCCC
Q 003356 442 LNLPVSYISQ-------------NWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQK 483 (827)
Q Consensus 442 ~~~p~~~~~~-------------~~~I~~va~SpdG~~lavag~-dg~i-iwd~~t~ 483 (827)
+++|..-... ..-|+.+.+|.|.++|.+++. +|.+ .||+..-
T Consensus 288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred EECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 5555532111 123788999999999999875 6778 9998653
No 417
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=69.23 E-value=92 Score=34.27 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=32.1
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEcCCCCc---ceEEEEeecCCCC-CCCCCCeEEEEECCCCCEEEEEE
Q 003356 261 CASIAPEQQILAVGTRRGVVELYDLAESAS---LIRTVSLYDWGYS-MDDTGPVSCIAWTPDNSAFAVGW 326 (827)
Q Consensus 261 ~va~sp~~~lla~g~~dg~v~vw~~~~~~~---~~~~l~~~~~~~~-~~h~~~V~~l~~spDg~~Lasg~ 326 (827)
-+++.+++ +++ ++.+...++.+.+..+. ....+- ..++.. ..+......++|.|||.+.++-+
T Consensus 76 Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~-~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 76 GLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLL-SGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred ceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEE-EccCCCCCcccccccCceECCCCCEEEecc
Confidence 37888888 444 44444334445433111 111111 112211 11234578899999999766554
No 418
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.59 E-value=21 Score=36.08 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=49.9
Q ss_pred EcCCCCEEEEEecCCeEEEEEcCCCCcceE-EEEeecCCC-----CCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 264 IAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDWGY-----SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 264 ~sp~~~lla~g~~dg~v~vw~~~~~~~~~~-~l~~~~~~~-----~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
+..++.++.+-+.+|.+++||+.+ .+.+. .......-. .......|..+..+.+|.-|++-+. |....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~-~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKK-GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCC-CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEeccc
Confidence 445788899999999999999987 43322 111100000 0025667999999999998877664 788899876
Q ss_pred CC
Q 003356 338 GC 339 (827)
Q Consensus 338 ~~ 339 (827)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 54
No 419
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=68.29 E-value=1.9e+02 Score=34.63 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=50.4
Q ss_pred CcEE-EEEc--CCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCC-----C-EEEEEEcC
Q 003356 258 DAVC-ASIA--PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-----S-AFAVGWKS 328 (827)
Q Consensus 258 ~~v~-va~s--p~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg-----~-~Lasg~~D 328 (827)
...+ ++++ ...++||+++....|.||-............ +..|...|-+|+|-++. . .+++++-.
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~------s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~ 237 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP------SHQHSHNIPNVSFLDDDLDPNGHVKVVATDIS 237 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc------ccccccCCCeeEeecCCCCCccceEEEEEecc
Confidence 3455 8998 8899999999999999887654111111000 11256678899998743 2 78888888
Q ss_pred CcEEEEec
Q 003356 329 RGLTVWSV 336 (827)
Q Consensus 329 g~v~vWs~ 336 (827)
|.+.+|++
T Consensus 238 G~v~~~~I 245 (717)
T PF08728_consen 238 GEVWTFKI 245 (717)
T ss_pred CcEEEEEE
Confidence 99988887
No 420
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=68.17 E-value=1.7e+02 Score=31.22 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=17.9
Q ss_pred EEEEEcCCCCEEEEEeCCc-eE-EEEcC
Q 003356 456 QHVAASKDGMFLAVAGLHG-LI-LYDIR 481 (827)
Q Consensus 456 ~~va~SpdG~~lavag~dg-~i-iwd~~ 481 (827)
-.++...+|.+-+++..+| -+ .|+..
T Consensus 216 DG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 216 DGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CceEEeCCCCEEEecccCCceEEEECCC
Confidence 4577888888776665554 45 78776
No 421
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.65 E-value=20 Score=40.10 Aligned_cols=77 Identities=10% Similarity=0.142 Sum_probs=47.3
Q ss_pred EEEEecceEEEEEccCeEEEeecCCc---------e--eEEEEEEeChHhh---hhcCcccEEEEcCCc---cEEEEEec
Q 003356 25 IYFKVNNGLLLIASPCHIELWSSSQH---------K--VRLGKYKRDSESV---QREGENLQAVWSPDT---KLIAVVTS 87 (827)
Q Consensus 25 v~fspdg~lla~~~~~~v~IW~~~~~---------~--~~l~~~~r~~~s~---~~~G~~~~v~wSPDg---~~lav~t~ 87 (827)
|..|+.|.+.|-++.+.|.|-...+. + +.+|...--...+ ..+=....++|+|++ ..|.+-++
T Consensus 109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~s 188 (741)
T KOG4460|consen 109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTS 188 (741)
T ss_pred EEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEec
Confidence 45678899888888777777555111 1 1112111000000 012234567899998 68999999
Q ss_pred CcEEEEEEEEecCc
Q 003356 88 SLYLHIFKVQITEK 101 (827)
Q Consensus 88 dg~l~l~~v~~~~~ 101 (827)
|+++|+|+......
T Consensus 189 dnviRiy~lS~~te 202 (741)
T KOG4460|consen 189 DNVIRIYSLSEPTE 202 (741)
T ss_pred CcEEEEEecCCcch
Confidence 99999999975543
No 422
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=66.66 E-value=1.8e+02 Score=32.40 Aligned_cols=112 Identities=12% Similarity=0.129 Sum_probs=64.9
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCCCcc-eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~~~~-~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~ 340 (827)
+..++++.++++|......+-|+- ++. ...... .....+..+.|.+||..++++.. |+ .+|+...++
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~---G~~~W~~~~~-------~~~~~l~~v~~~~dg~l~l~g~~-G~-l~~S~d~G~ 311 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEP---GQPYWQPHNR-------ASARRIQNMGWRADGGLWLLTRG-GG-LYVSKGTGL 311 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCC---CCcceEEecC-------CCccceeeeeEcCCCCEEEEeCC-ce-EEEecCCCC
Confidence 567788888888775543343332 222 122222 13556899999999998877743 54 466666554
Q ss_pred e-----EEEeccc-cccceeeeeecCCCCCCccceeecce-eEEEccCCceEEEEe
Q 003356 341 L-----MSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGTS-MMQWDEYGYRLYAIE 389 (827)
Q Consensus 341 l-----~~tl~~~-~~~~v~s~~~sp~~~~~~~~l~sg~~-i~~W~~~~~~l~~~~ 389 (827)
. +..+... ....+.++.|.+++ ..++.|.. .+....++++-|...
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~----~~~a~G~~G~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKK----EAWAAGGSGILLRSTDGGKSWKRD 363 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCC----cEEEEECCCcEEEeCCCCcceeEc
Confidence 2 2222211 11246777887776 77777763 344445566666554
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=66.56 E-value=1.6e+02 Score=32.28 Aligned_cols=71 Identities=7% Similarity=0.077 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCCEEEEEe-----------cCC-eEEEEEcCCC-Ccc--eEEEEeecCCCCCCCCCCeEEEEECCCCCE
Q 003356 257 GDAVCASIAPEQQILAVGT-----------RRG-VVELYDLAES-ASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321 (827)
Q Consensus 257 ~~~v~va~sp~~~lla~g~-----------~dg-~v~vw~~~~~-~~~--~~~l~~~~~~~~~~h~~~V~~l~~spDg~~ 321 (827)
..++.++|.++|++.++-. ..+ .|.+++-.+. +.. ...+.. .......+++.++| +
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--------~l~~p~Gi~~~~~G-l 84 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--------ELSMVTGLAVAVGG-V 84 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--------CCCCccceeEecCC-E
Confidence 4556677778877766532 223 5666543321 221 122221 22345789999999 4
Q ss_pred EEEEEcCCcEEEEecc
Q 003356 322 FAVGWKSRGLTVWSVS 337 (827)
Q Consensus 322 Lasg~~Dg~v~vWs~~ 337 (827)
++ +....-+++.+..
T Consensus 85 yV-~~~~~i~~~~d~~ 99 (367)
T TIGR02604 85 YV-ATPPDILFLRDKD 99 (367)
T ss_pred EE-eCCCeEEEEeCCC
Confidence 44 4444433444553
No 424
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=66.43 E-value=1.1e+02 Score=28.18 Aligned_cols=111 Identities=15% Similarity=0.184 Sum_probs=60.7
Q ss_pred EEcCCCCEEEEEecCCeEEEEEcCCC-------CcceEEEEeecCCCCCCCCCCeEEEEECC-----CCCEEEEEEcCCc
Q 003356 263 SIAPEQQILAVGTRRGVVELYDLAES-------ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-----DNSAFAVGWKSRG 330 (827)
Q Consensus 263 a~sp~~~lla~g~~dg~v~vw~~~~~-------~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-----Dg~~Lasg~~Dg~ 330 (827)
.|.....-|+.++.-|+|.|++-... ...++.+.. ...|++++-.| +...|..|+. ..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---------n~~italaaG~l~~~~~~D~LliGt~-t~ 74 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---------NQEITALAAGRLKPDDGRDCLLIGTQ-TS 74 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---------CCceEEEEEEecCCCCCcCEEEEecc-ce
Confidence 45455567888888889999876531 123344443 34566664333 3458888887 78
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--eeEEEccCCceE
Q 003356 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRL 385 (827)
Q Consensus 331 v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l 385 (827)
+-.||+..+.-+..- +- .+.|+++.+-.-+......++-|. .+.-++.++.++
T Consensus 75 llaYDV~~N~d~Fyk-e~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 75 LLAYDVENNSDLFYK-EV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred EEEEEcccCchhhhh-hC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 999999876533211 11 234555555332221113333333 444455555544
No 425
>PHA02790 Kelch-like protein; Provisional
Probab=66.24 E-value=1.7e+02 Score=33.56 Aligned_cols=27 Identities=26% Similarity=0.648 Sum_probs=21.3
Q ss_pred CCCCEEEEEeCC-----ceE-EEEcCCCeEEee
Q 003356 462 KDGMFLAVAGLH-----GLI-LYDIRQKKWRVF 488 (827)
Q Consensus 462 pdG~~lavag~d-----g~i-iwd~~t~~w~~f 488 (827)
-+|+..++||.+ ..+ .||..+++|...
T Consensus 445 ~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 445 VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 477888888865 357 999999999864
No 426
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=66.08 E-value=3 Score=49.03 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=43.4
Q ss_pred EcCCCCEEEEEecCCeEEEEEcCCCCc-ceEEEEeecCCCCC--CCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 264 IAPEQQILAVGTRRGVVELYDLAESAS-LIRTVSLYDWGYSM--DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 264 ~sp~~~lla~g~~dg~v~vw~~~~~~~-~~~~l~~~~~~~~~--~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
|-+...++..+-.+++|++-+++.... .++. ++ ++..-. -..|-+.--..||||+.+|.+..||.++.|.++
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rs-Hs-~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALRSLFRS-HS-QRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHHHHHHh-cC-CCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 334557788888899999977765111 1111 11 000000 011222222489999999999999999999873
No 427
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=64.44 E-value=10 Score=24.13 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=18.5
Q ss_pred ccEEEEcCCccEEEEEecCcEEEEEE
Q 003356 70 NLQAVWSPDTKLIAVVTSSLYLHIFK 95 (827)
Q Consensus 70 ~~~v~wSPDg~~lav~t~dg~l~l~~ 95 (827)
+.+++-++ +++|++|+.++||+|.
T Consensus 4 i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 4 IEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred EEEEEccC--CEEEEEeCCCeEEecC
Confidence 34555554 5999999999999984
No 428
>PHA02713 hypothetical protein; Provisional
Probab=62.90 E-value=2.4e+02 Score=33.04 Aligned_cols=55 Identities=13% Similarity=0.250 Sum_probs=34.6
Q ss_pred EcCCCCEEEEEeCCc------eE-EEEcCC-CeEEeeCCccceEEEEEEEEEE-eCCEEEEEEEee
Q 003356 460 ASKDGMFLAVAGLHG------LI-LYDIRQ-KKWRVFGDITQEQKIQSKGLLW-LGKIIVVCNYID 516 (827)
Q Consensus 460 ~SpdG~~lavag~dg------~i-iwd~~t-~~w~~f~~~~~e~~~~v~gl~W-~~~~li~~~~~~ 516 (827)
..-+|+..++||.++ .+ .||..+ ++|....+....+ ...+++- .+.++++|+++.
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--~~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--SALHTILHDNTIMMLHCYES 523 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc--ccceeEEECCEEEEEeeecc
Confidence 344677777787652 46 899999 8999876544322 2234443 455777776654
No 429
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=61.94 E-value=1.1e+02 Score=34.75 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=15.2
Q ss_pred CCCCCeEEEEECCCCCEEEEEEc
Q 003356 305 DDTGPVSCIAWTPDNSAFAVGWK 327 (827)
Q Consensus 305 ~h~~~V~~l~~spDg~~Lasg~~ 327 (827)
.|.+ ..|+|.|||++.++-++
T Consensus 145 ~H~G--grI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 145 DHNG--GRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CcCC--ceEEECCCCcEEEEECC
Confidence 4655 56789999997666554
No 430
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.33 E-value=2.1e+02 Score=29.87 Aligned_cols=31 Identities=16% Similarity=0.361 Sum_probs=22.5
Q ss_pred EEEcCCCCEEEEEecCC-eEEEEEcCCCCcceE
Q 003356 262 ASIAPEQQILAVGTRRG-VVELYDLAESASLIR 293 (827)
Q Consensus 262 va~sp~~~lla~g~~dg-~v~vw~~~~~~~~~~ 293 (827)
++.|.+..+++..+-.| ...+||..+ +..+.
T Consensus 285 iA~n~~~glV~lTSP~GN~~vi~da~t-G~vv~ 316 (366)
T COG3490 285 IAANRRDGLVALTSPRGNRAVIWDAAT-GAVVS 316 (366)
T ss_pred eeecccCCeEEEecCCCCeEEEEEcCC-CcEEe
Confidence 78887777877776655 567899987 55443
No 431
>PRK13684 Ycf48-like protein; Provisional
Probab=58.05 E-value=2.7e+02 Score=30.08 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=30.3
Q ss_pred ceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEcCCC-eEEee
Q 003356 437 LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQK-KWRVF 488 (827)
Q Consensus 437 ~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~~t~-~w~~f 488 (827)
..|+..+.|.. .....+..+++.++++.+ +++.+|.++.....| .|+..
T Consensus 246 ~sW~~~~~~~~--~~~~~l~~v~~~~~~~~~-~~G~~G~v~~S~d~G~tW~~~ 295 (334)
T PRK13684 246 ESWSKPIIPEI--TNGYGYLDLAYRTPGEIW-AGGGNGTLLVSKDGGKTWEKD 295 (334)
T ss_pred CccccccCCcc--ccccceeeEEEcCCCCEE-EEcCCCeEEEeCCCCCCCeEC
Confidence 35665444421 123457889999988755 566788786666543 57654
No 432
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=57.91 E-value=39 Score=37.61 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEE-------------CCC-CCEEE-
Q 003356 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW-------------TPD-NSAFA- 323 (827)
Q Consensus 259 ~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~-------------spD-g~~La- 323 (827)
..++..+|++++.|+...=|.|.|+|+.. +..++.+++.. .+.-+-+....- .+. ..+|+
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYR----dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYR----DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCc----cceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 34489999999999876668999999988 77777666621 111111111000 000 12232
Q ss_pred EEEcCCcEEEEeccCCeeEEEec
Q 003356 324 VGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 324 sg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
=+-..|.|.||++..|..+..+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEE
Confidence 24456899999998887665543
No 433
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.73 E-value=50 Score=33.34 Aligned_cols=73 Identities=8% Similarity=0.071 Sum_probs=46.0
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhh---------hcCcccEEEEcCCccEEEEEecCcEE
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQ---------REGENLQAVWSPDTKLIAVVTSSLYL 91 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~---------~~G~~~~v~wSPDg~~lav~t~dg~l 91 (827)
.+++.+..++.++.++ ..+.+++||+. .+..+... -+...+- ....++.+..+.+|.-|++-+ +|..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~-~~k~~~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~ 89 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLK-KGKAVLPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDS 89 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECC-CCeeccCC-ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCE
Confidence 5777788899888777 57899999995 33222111 0222221 234556788888887766654 4666
Q ss_pred EEEEEE
Q 003356 92 HIFKVQ 97 (827)
Q Consensus 92 ~l~~v~ 97 (827)
..|+..
T Consensus 90 y~y~~~ 95 (219)
T PF07569_consen 90 YSYSPD 95 (219)
T ss_pred EEeccc
Confidence 777764
No 434
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=56.91 E-value=3.5e+02 Score=31.01 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=40.4
Q ss_pred CEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC--CCCEEEEEE---------cCCcEEEEecc
Q 003356 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGW---------KSRGLTVWSVS 337 (827)
Q Consensus 269 ~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--Dg~~Lasg~---------~Dg~v~vWs~~ 337 (827)
..+.+++.+|.|.-+|.++ ++.+-...... +...-..+.-+| ++..+++++ .++.+...|..
T Consensus 111 ~~V~v~~~~g~v~AlD~~T-G~~~W~~~~~~------~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~ 183 (488)
T cd00216 111 RKVFFGTFDGRLVALDAET-GKQVWKFGNND------QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVE 183 (488)
T ss_pred CeEEEecCCCeEEEEECCC-CCEeeeecCCC------CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECC
Confidence 6777888999999999988 65544433311 100000111122 123444443 35778888888
Q ss_pred CCeeEEEec
Q 003356 338 GCRLMSTIR 346 (827)
Q Consensus 338 ~~~l~~tl~ 346 (827)
+|+......
T Consensus 184 TG~~~W~~~ 192 (488)
T cd00216 184 TGKLLWRFY 192 (488)
T ss_pred CCceeeEee
Confidence 887766554
No 435
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=56.42 E-value=5.3e+02 Score=32.91 Aligned_cols=87 Identities=8% Similarity=0.061 Sum_probs=40.3
Q ss_pred cEEEEcCCccEEEEEecCcEE-EEEEEEecCceeecCCCCCCCceee---eEeeEeecccccccc--cceEEEeecCCCe
Q 003356 71 LQAVWSPDTKLIAVVTSSLYL-HIFKVQITEKSIQIGGKQPSGLFFI---KISLVLNEQLPFAEK--GLSVSNIVSDNKH 144 (827)
Q Consensus 71 ~~v~wSPDg~~lav~t~dg~l-~l~~v~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~--~~~v~~~~~d~~~ 144 (827)
.+++++|+|...++-|....| ++=++.++.......+...+--|.. +-.++.+.....+.+ .....|++||++-
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v 675 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDV 675 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcE
Confidence 689999999877666654433 3333433332222323222111110 111122222222222 2234566777776
Q ss_pred EEEEecCCcEEEE
Q 003356 145 MLLGLSDGSLYSI 157 (827)
Q Consensus 145 llv~t~dg~i~~~ 157 (827)
+++-..+-.|+.+
T Consensus 676 ~IAD~gN~rIr~V 688 (1899)
T KOG4659|consen 676 IIADSGNSRIRKV 688 (1899)
T ss_pred EEecCCchhhhhh
Confidence 6665655555544
No 436
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.19 E-value=65 Score=36.24 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=46.7
Q ss_pred EEEcCCCCEEEEEecCCeEEEEE-----c----CCCCcce---EEEEeecCCCCCCCCCCeEEEEECCCC---CEEEEEE
Q 003356 262 ASIAPEQQILAVGTRRGVVELYD-----L----AESASLI---RTVSLYDWGYSMDDTGPVSCIAWTPDN---SAFAVGW 326 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~-----~----~~~~~~~---~~l~~~~~~~~~~h~~~V~~l~~spDg---~~Lasg~ 326 (827)
+..|+.|+.+|..+.+|.+.++= - .+ ++.. +++....--+.....-.+...+|+|+. ..|..-.
T Consensus 109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eD-gk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~ 187 (741)
T KOG4460|consen 109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFED-GKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLT 187 (741)
T ss_pred EEecCCCceEEEecCCeeEEEEchhhcCccceecC-CCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEe
Confidence 66777777777777777665542 1 11 2111 111111101111122347788999975 5777778
Q ss_pred cCCcEEEEeccCCeeE
Q 003356 327 KSRGLTVWSVSGCRLM 342 (827)
Q Consensus 327 ~Dg~v~vWs~~~~~l~ 342 (827)
.|+++|+||...-+.+
T Consensus 188 sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 188 SDNVIRIYSLSEPTEL 203 (741)
T ss_pred cCcEEEEEecCCcchh
Confidence 8899999999765433
No 437
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=53.44 E-value=19 Score=42.76 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=21.0
Q ss_pred EEEEeCCcEEEEeeccCccccceee
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFI 248 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~ 248 (827)
.-+++||+++++...||.++.|+..
T Consensus 241 ~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 241 ASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eeeCCCCcEEEEeecCCccceeeee
Confidence 3488999999999999998888754
No 438
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=50.99 E-value=2.8e+02 Score=28.13 Aligned_cols=93 Identities=9% Similarity=0.097 Sum_probs=58.2
Q ss_pred EEEcCCCCEEE-EEecCCeEEEEEcCCC-Cc-----ceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEE
Q 003356 262 ASIAPEQQILA-VGTRRGVVELYDLAES-AS-----LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (827)
Q Consensus 262 va~sp~~~lla-~g~~dg~v~vw~~~~~-~~-----~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vW 334 (827)
++|+.+.+.+. +-+.+-+|.-||.+-. +. .+..++..+.. +|..+ -.++...+|.+.++.+.-++|...
T Consensus 163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~---e~~~P-DGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPF---ESLEP-DGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCc---CCCCC-CcceEccCCcEEEEEecCcEEEEE
Confidence 67777766544 4566778888884421 22 12222221111 11111 223445689999999998999999
Q ss_pred eccCCeeEEEeccccccceeeeeec
Q 003356 335 SVSGCRLMSTIRQISLSSISSPIVK 359 (827)
Q Consensus 335 s~~~~~l~~tl~~~~~~~v~s~~~s 359 (827)
|..+|+++.+++-. +..++|++|-
T Consensus 239 dp~tGK~L~eiklP-t~qitsccFg 262 (310)
T KOG4499|consen 239 DPTTGKILLEIKLP-TPQITSCCFG 262 (310)
T ss_pred CCCCCcEEEEEEcC-CCceEEEEec
Confidence 99999998887765 5667887773
No 439
>PHA02790 Kelch-like protein; Provisional
Probab=50.96 E-value=4.3e+02 Score=30.24 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=36.1
Q ss_pred cCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeC
Q 003356 461 SKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (827)
Q Consensus 461 SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~ 528 (827)
.-+|+..++|| .. .||..+++|....+....+. ........+.++++|+++.......+.+|..
T Consensus 405 ~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~-~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 405 VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRD-NPELIIVDNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcc-ccEEEEECCEEEEECCcCCCcccceEEEEEC
Confidence 45677666664 46 99999999997765433221 1112233456777776543222234555544
No 440
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=49.33 E-value=3.6e+02 Score=28.79 Aligned_cols=119 Identities=11% Similarity=0.176 Sum_probs=59.7
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 258 ~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
..+. +..++||+++|++.......-|+-.. ........ .....|.+|.|+||+.+.+.+ +.|.++.=+.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~--~~w~~~~r-------~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQ--TTWQPHNR-------NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE---------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCC--ccceEEcc-------CccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 4455 77889999999987666666666432 22222221 146789999999999877765 5566665551
Q ss_pred -cCCeeEEE--ecc-ccccceeeeeecCCCCCCccceeecc-eeEEEccCCceEEEEec
Q 003356 337 -SGCRLMST--IRQ-ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE 390 (827)
Q Consensus 337 -~~~~l~~t--l~~-~~~~~v~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~ 390 (827)
........ ... .....+..+++.++. +.++.|. -.+.-+.++++-|....
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~----~~wa~gg~G~l~~S~DgGktW~~~~ 269 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPN----EIWAVGGSGTLLVSTDGGKTWQKDR 269 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-----EEEEESTT-EEEESSTTSS-EE-G
T ss_pred CCCccccccccCCcccCceeeEEEEecCCC----CEEEEeCCccEEEeCCCCccceECc
Confidence 22211111 110 001235677887776 7777665 34555666777666543
No 441
>PHA03098 kelch-like protein; Provisional
Probab=49.30 E-value=2.7e+02 Score=32.33 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=36.5
Q ss_pred EcCCCCEEEEEeCCc--------eE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeC
Q 003356 460 ASKDGMFLAVAGLHG--------LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (827)
Q Consensus 460 ~SpdG~~lavag~dg--------~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~ 528 (827)
..-+++..++||.++ .+ .||..+++|.........+. ........+.+++.|+.........+.+|..
T Consensus 434 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 434 IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI-NASLCIFNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc-cceEEEECCEEEEEcCCcCCcccceeEEEeC
Confidence 334677777777532 26 99999999998754322211 1111223445556664433222344555644
No 442
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.65 E-value=3.6e+02 Score=28.41 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=78.3
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEE
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
.|...-+. +.|||+.+.|.+-.....-.|+ ++..+..++++...- -.---.++|.-+|++.++--+++.+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVE-lt~~GdlirtiPL~g-------~~DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVE-LTKEGDLIRTIPLTG-------FSDPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEE-EecCCceEEEecccc-------cCChhHeEEecCCEEEEEehhcceEE
Confidence 34344466 9999998877776666655555 444488888776521 12235688999999999999999999
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEe
Q 003356 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFS 400 (827)
Q Consensus 333 vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~ 400 (827)
+..+.....+..+.. ..+.-....+ . -.|-.-+.|++.+..++..-+.....|+...
T Consensus 154 ~~~vd~~t~~~~~~~--------~~i~L~~~~k-~--N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 154 LFTVDADTTVISAKV--------QKIPLGTTNK-K--NKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EEEEcCCccEEeccc--------eEEeccccCC-C--CcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 998866533322211 0110000000 0 1233567899998888877655555555544
No 443
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=46.46 E-value=2.2e+02 Score=29.99 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=36.7
Q ss_pred CceEEEEcCCCeEEeeCCccceEEEEEEEEEEe-CCEEEEEEE-eeCC-CcEEEEEeeCC
Q 003356 473 HGLILYDIRQKKWRVFGDITQEQKIQSKGLLWL-GKIIVVCNY-IDSS-NTYELLFYPRY 529 (827)
Q Consensus 473 dg~iiwd~~t~~w~~f~~~~~e~~~~v~gl~W~-~~~li~~~~-~~~~-~~~~lrly~~~ 529 (827)
.++.+||..+.+|..+++. -...|..|.|. ++.+++++. .-.. ....+..|...
T Consensus 16 ~~lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~ 72 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNG---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFK 72 (281)
T ss_pred CEEEEEECCCCEeecCCCC---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecC
Confidence 3555999999999998765 33468899997 555555443 3333 35567777764
No 444
>PF13964 Kelch_6: Kelch motif
Probab=46.43 E-value=24 Score=25.84 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=22.8
Q ss_pred EcCCCCEEEEEeCCc------eE-EEEcCCCeEEeeCC
Q 003356 460 ASKDGMFLAVAGLHG------LI-LYDIRQKKWRVFGD 490 (827)
Q Consensus 460 ~SpdG~~lavag~dg------~i-iwd~~t~~w~~f~~ 490 (827)
..-+++..+.||.++ .+ +||++|++|....+
T Consensus 8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 45 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP 45 (50)
T ss_pred EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC
Confidence 445667777777765 45 99999999997643
No 445
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=45.01 E-value=2.5e+02 Score=25.84 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=31.3
Q ss_pred eeccCCCcEEEEEEcC-----CCCEEEEEeCCceEEEEcCCCeEEeeCCccc
Q 003356 447 SYISQNWPVQHVAASK-----DGMFLAVAGLHGLILYDIRQKKWRVFGDITQ 493 (827)
Q Consensus 447 ~~~~~~~~I~~va~Sp-----dG~~lavag~dg~iiwd~~t~~w~~f~~~~~ 493 (827)
++++=+..|++++-.+ +...|.+|+...++.||+..+. .+|..+.+
T Consensus 42 ~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~-d~Fyke~~ 92 (136)
T PF14781_consen 42 SFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNS-DLFYKEVP 92 (136)
T ss_pred eEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCc-hhhhhhCc
Confidence 4455556677775533 4678999999988899998775 34544433
No 446
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.70 E-value=1.1e+02 Score=30.84 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=38.1
Q ss_pred EEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC
Q 003356 263 SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP 317 (827)
Q Consensus 263 a~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp 317 (827)
++.-+|.+.++....|+|.-.|..+ ++.+..++. .+..|+|++|--
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~eikl--------Pt~qitsccFgG 263 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTT-GKILLEIKL--------PTPQITSCCFGG 263 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCC-CcEEEEEEc--------CCCceEEEEecC
Confidence 4455788888888888999999888 888888888 688899999964
No 447
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=44.07 E-value=43 Score=23.95 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=22.9
Q ss_pred EEcCCCCEEEEEeCCc------eE-EEEcCCCeEEee
Q 003356 459 AASKDGMFLAVAGLHG------LI-LYDIRQKKWRVF 488 (827)
Q Consensus 459 a~SpdG~~lavag~dg------~i-iwd~~t~~w~~f 488 (827)
+..-+++..++||.++ .+ .||..+++|+..
T Consensus 7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 4445677788888776 55 999999999865
No 448
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=43.96 E-value=99 Score=36.13 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=43.5
Q ss_pred CcceEEEEEeCCcEEEEeeccCc--cccceeeccc------eecC-----------CCCcE-EEEEcC----CCCEEEEE
Q 003356 219 PMRLLFVLYSNGQLMSCSVSKKG--LKLAEFIKID------KELG-----------SGDAV-CASIAP----EQQILAVG 274 (827)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~~~~--~~~~~~~~~~------~~~~-----------h~~~v-~va~sp----~~~lla~g 274 (827)
....+++...||.++........ -..|...... .+.+ -.... .++++. +..++++-
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 44667778889988877655311 1123322110 0000 11222 266666 77899999
Q ss_pred ecCCeEEEEEcCCCCcceEEEEe
Q 003356 275 TRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 275 ~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
+.|+++|+||+.+ +.++.+...
T Consensus 237 ~~D~~LRiW~l~t-~~~~~~~~~ 258 (547)
T PF11715_consen 237 SRDHTLRIWSLET-GQCLATIDL 258 (547)
T ss_dssp ETTSEEEEEETTT-TCEEEEEET
T ss_pred eCCCeEEEEECCC-CeEEEEecc
Confidence 9999999999998 777665544
No 449
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=43.10 E-value=4.9e+02 Score=28.67 Aligned_cols=30 Identities=7% Similarity=-0.003 Sum_probs=14.3
Q ss_pred ccEEEEccCCEEEEE-EcCceEEEEEEEEec
Q 003356 545 KPIVMDVYEDYILVT-YRPFDVHIFHVKLFG 574 (827)
Q Consensus 545 ~~~~l~~~~~~llV~-~~~~~i~l~~~~~~~ 574 (827)
|-..+++.+..++-. ...|...||-+++..
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY~v~i~~ 384 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVYLVEIPD 384 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEEEEE--C
T ss_pred CCCccCCCCCEEEEECCCCCCccEEEEeCcc
Confidence 456677777766652 223677788777644
No 450
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=42.83 E-value=6.8e+02 Score=30.17 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=44.6
Q ss_pred EEEcCCCCEEEEEecCCe-----EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 262 ASIAPEQQILAVGTRRGV-----VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~-----v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
++|-|+|+.+|+-..||. |..+.-+. +- -.++....+....+..++|.-....+|++-. +.+++|..
T Consensus 252 LSWkpqgS~~ati~td~~~~S~~ViFfErNG---Lr----HGef~lr~~~dEk~~~~~wn~~s~vlav~~~-n~~~lwtt 323 (1243)
T COG5290 252 LSWKPQGSKYATIGTDGCSTSESVIFFERNG---LR----HGEFDLRVGCDEKAFLENWNLLSTVLAVAEG-NLLKLWTT 323 (1243)
T ss_pred cccccCCceeeeeccCCCCCcceEEEEccCC---cc----cCCccccCCchhhhhhhhhhHHHHHHHHhhc-ceEEEEEc
Confidence 899999999999775542 33333211 11 0111111224556778899888888888766 78999987
Q ss_pred cCC
Q 003356 337 SGC 339 (827)
Q Consensus 337 ~~~ 339 (827)
..-
T Consensus 324 kNy 326 (1243)
T COG5290 324 KNY 326 (1243)
T ss_pred cce
Confidence 654
No 451
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=42.52 E-value=12 Score=42.79 Aligned_cols=105 Identities=10% Similarity=0.208 Sum_probs=63.1
Q ss_pred eCCcEEEEeeccCccccceeeccc--eecCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEc-CCCCcceEEEEeecCCC
Q 003356 228 SNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDL-AESASLIRTVSLYDWGY 302 (827)
Q Consensus 228 ~dG~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~-~~~~~~~~~l~~~~~~~ 302 (827)
.|-+++.+|.....+.+.+..... +..-.++.+. +.+.| .+.++++-. ||.|.+||. ..-..+++.+...+.
T Consensus 164 rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N-- 240 (783)
T KOG1008|consen 164 RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNEN-- 240 (783)
T ss_pred cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCC--
Confidence 677888888777677776655321 1111234555 77888 788888766 999999994 221122222211000
Q ss_pred CCCCCCCeEEEEECCCCC-EEEEEEc-CCcEEEEecc
Q 003356 303 SMDDTGPVSCIAWTPDNS-AFAVGWK-SRGLTVWSVS 337 (827)
Q Consensus 303 ~~~h~~~V~~l~~spDg~-~Lasg~~-Dg~v~vWs~~ 337 (827)
.....+..++|.|--. .||+... .++|+.+++.
T Consensus 241 --~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 241 --KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred --CcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 0223589999999432 5555554 4689999874
No 452
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.29 E-value=5.1e+02 Score=32.76 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=24.4
Q ss_pred CCCCCEEEEEEcCCcEEEEeccCCee
Q 003356 316 TPDNSAFAVGWKSRGLTVWSVSGCRL 341 (827)
Q Consensus 316 spDg~~Lasg~~Dg~v~vWs~~~~~l 341 (827)
+++|..++++..||.+..||+..+++
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 89999999999999999999998876
No 453
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=41.28 E-value=1.1e+02 Score=30.71 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=37.2
Q ss_pred CEEEEEecCCeEEEEEcCCC-CcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC
Q 003356 269 QILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (827)
Q Consensus 269 ~lla~g~~dg~v~vw~~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D 328 (827)
+.|..+...+.|.+|++.+. .....++.. -+.|..+.++.-|.+|++--++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---------v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST---------VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc---------hhheeEEEeccccceEEEEEee
Confidence 44444466788999999841 344456654 6889999999999999986553
No 454
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=40.35 E-value=6.2e+02 Score=29.01 Aligned_cols=76 Identities=11% Similarity=-0.034 Sum_probs=42.2
Q ss_pred CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeE--EEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEe
Q 003356 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS--CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (827)
Q Consensus 268 ~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~--~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl 345 (827)
+..+.+++.++.+.-.|..+ ++.+-....... ... ....+. .++.. ++..+..+..|+.|.-+|..+|+.+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~t-G~~~W~~~~~~~-~~~-~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAAT-GKVLWRYDPKLP-ADR-GCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCC-ChhhceeCCCCC-ccc-cccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence 34456677788888888877 544333222100 000 000110 11111 2256667778899999999988887665
Q ss_pred cc
Q 003356 346 RQ 347 (827)
Q Consensus 346 ~~ 347 (827)
..
T Consensus 137 ~~ 138 (488)
T cd00216 137 GN 138 (488)
T ss_pred cC
Confidence 43
No 455
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=39.87 E-value=76 Score=21.81 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=22.3
Q ss_pred CCCCEEEEE-EcCCcEEEEeccCCeeEEEec
Q 003356 317 PDNSAFAVG-WKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 317 pDg~~Lasg-~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
|||+.|.++ ..++.|.++|..+++...++.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 678866554 467899999998887766554
No 456
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=39.22 E-value=39 Score=24.53 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=17.8
Q ss_pred cCCCCEEEEEeCCc------eE-EEEcCCCeEEee
Q 003356 461 SKDGMFLAVAGLHG------LI-LYDIRQKKWRVF 488 (827)
Q Consensus 461 SpdG~~lavag~dg------~i-iwd~~t~~w~~f 488 (827)
..+++.++.||.+. .+ +||+.+++|...
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 35677777787764 35 889999999765
No 457
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=38.81 E-value=8.2e+02 Score=29.98 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=52.5
Q ss_pred EEEEcC-CCCEEEEEecCCeEEEEEcCCCCc-ceEEE--EeecCCC---CCCCCCCeEEEEECCCCCEEEEEEcCCcEEE
Q 003356 261 CASIAP-EQQILAVGTRRGVVELYDLAESAS-LIRTV--SLYDWGY---SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (827)
Q Consensus 261 ~va~sp-~~~lla~g~~dg~v~vw~~~~~~~-~~~~l--~~~~~~~---~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~v 333 (827)
-++||| +.+.+|+-...|...||++....+ ....+ .....+. ..+....-..+.|.++-..|+++.. ..+.+
T Consensus 150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~ 228 (765)
T PF10214_consen 150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLML 228 (765)
T ss_pred eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEE
Confidence 399998 457999999999999999932111 11111 1111111 1112244458899999888888887 78999
Q ss_pred EeccCCee
Q 003356 334 WSVSGCRL 341 (827)
Q Consensus 334 Ws~~~~~l 341 (827)
.|+.+...
T Consensus 229 ~d~~~~~~ 236 (765)
T PF10214_consen 229 IDFESNWQ 236 (765)
T ss_pred EECCCCCc
Confidence 99987754
No 458
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=37.84 E-value=5.4e+02 Score=27.63 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=41.3
Q ss_pred EEEcCCCCEEEEEecC------CeEEEEEcCCCCcceEEEEeec-CC------CCCCCCCCeEEEEECCCCCEEEEEEc
Q 003356 262 ASIAPEQQILAVGTRR------GVVELYDLAESASLIRTVSLYD-WG------YSMDDTGPVSCIAWTPDNSAFAVGWK 327 (827)
Q Consensus 262 va~sp~~~lla~g~~d------g~v~vw~~~~~~~~~~~l~~~~-~~------~~~~h~~~V~~l~~spDg~~Lasg~~ 327 (827)
+++.+++.++++.-.+ -.|+-++.+ +.....+.... +. .........-+|+++|||+.|.++-+
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 6677888888877777 677777654 44444442211 10 11224567899999999997776655
No 459
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=37.61 E-value=4.4e+02 Score=26.46 Aligned_cols=64 Identities=19% Similarity=0.335 Sum_probs=44.3
Q ss_pred EEEEecceEEEEEccCeEEEeecCC-ceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecC---c---EEEEEE
Q 003356 25 IYFKVNNGLLLIASPCHIELWSSSQ-HKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---L---YLHIFK 95 (827)
Q Consensus 25 v~fspdg~lla~~~~~~v~IW~~~~-~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~d---g---~l~l~~ 95 (827)
++.+..+.+|++++...|.+|++.+ ...+++.+ .+-|.+..+..+.-|++|++-=.+ . ++|+|-
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F-------~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~ 93 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTF-------STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF 93 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEcccCCCceeEEE-------cchhheeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence 4455545677777788899999852 23344443 234788999999999999985432 2 788873
No 460
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=35.17 E-value=70 Score=26.96 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=23.8
Q ss_pred cccEEEEcCCccEEEEEec-CcEEEEEEEE
Q 003356 69 ENLQAVWSPDTKLIAVVTS-SLYLHIFKVQ 97 (827)
Q Consensus 69 ~~~~v~wSPDg~~lav~t~-dg~l~l~~v~ 97 (827)
.-..+..+||+++|+|++. .+.|++|+.+
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3358999999999999774 5789999875
No 461
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=35.09 E-value=5.8e+02 Score=27.17 Aligned_cols=248 Identities=15% Similarity=0.151 Sum_probs=99.6
Q ss_pred CcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEc
Q 003356 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDL 285 (827)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~ 285 (827)
....+.+|.|.....+.++ ...|.++-+ .|+. +.|+......-..-.-... +.|..+ ...++| ..|.| +..
T Consensus 15 t~~~l~dV~F~d~~~G~~V-G~~g~il~T--~DGG-~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~l--l~T 86 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAV-GAYGTILKT--TDGG-KTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGLL--LHT 86 (302)
T ss_dssp -SS-EEEEEESSSS-EEEE-ETTTEEEEE--SSTT-SS-EE-----S-----EEEEEEEETT-EEEEEE-ETTEE--EEE
T ss_pred CCCceEEEEEecCCEEEEE-ecCCEEEEE--CCCC-ccccccccCCCccceeeEEEEEecCC-ceEEEc-CCceE--EEe
Confidence 3446888888866666554 455655443 2322 2355433211000011122 666543 445555 45543 334
Q ss_pred CCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCC
Q 003356 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (827)
Q Consensus 286 ~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~ 365 (827)
.+.++....+.... .-.+....+....++...+++ ..|.| .-+..+|+-...+.......+..+..++++
T Consensus 87 ~DgG~tW~~v~l~~-----~lpgs~~~i~~l~~~~~~l~~-~~G~i-y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG--- 156 (302)
T PF14870_consen 87 TDGGKTWERVPLSS-----KLPGSPFGITALGDGSAELAG-DRGAI-YRTTDGGKTWQAVVSETSGSINDITRSSDG--- 156 (302)
T ss_dssp SSTTSS-EE----T-----T-SS-EEEEEEEETTEEEEEE-TT--E-EEESSTTSSEEEEE-S----EEEEEE-TTS---
T ss_pred cCCCCCcEEeecCC-----CCCCCeeEEEEcCCCcEEEEc-CCCcE-EEeCCCCCCeeEcccCCcceeEeEEECCCC---
Confidence 44355555443210 023344445554555555544 33443 334455554444433324557777777887
Q ss_pred ccceeecc---eeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEe
Q 003356 366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (827)
Q Consensus 366 ~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~ 442 (827)
..++.+. -.+.|+++...-.........+|-.+.| +..-.+|.+.. ...+.... .......|+..
T Consensus 157 -~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf---------~~~~~lw~~~~-Gg~~~~s~-~~~~~~~w~~~ 224 (302)
T PF14870_consen 157 -RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGF---------SPDGNLWMLAR-GGQIQFSD-DPDDGETWSEP 224 (302)
T ss_dssp --EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE----------TTS-EEEEET-TTEEEEEE--TTEEEEE---
T ss_pred -cEEEEECcccEEEEecCCCccceEEccCccceehhcee---------cCCCCEEEEeC-CcEEEEcc-CCCCccccccc
Confidence 6665443 3456665432111111122334433222 22234454442 22233332 12222345443
Q ss_pred eeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEcCCCe-EEe
Q 003356 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKK-WRV 487 (827)
Q Consensus 443 ~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~~t~~-w~~ 487 (827)
..|.. ...+-+..+++.+++...|+| ..|.++++...|+ |+.
T Consensus 225 ~~~~~--~~~~~~ld~a~~~~~~~wa~g-g~G~l~~S~DgGktW~~ 267 (302)
T PF14870_consen 225 IIPIK--TNGYGILDLAYRPPNEIWAVG-GSGTLLVSTDGGKTWQK 267 (302)
T ss_dssp B-TTS--S--S-EEEEEESSSS-EEEEE-STT-EEEESSTTSS-EE
T ss_pred cCCcc--cCceeeEEEEecCCCCEEEEe-CCccEEEeCCCCccceE
Confidence 33331 233458999999998877755 5677888887765 764
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.59 E-value=4.6e+02 Score=33.40 Aligned_cols=106 Identities=23% Similarity=0.424 Sum_probs=60.2
Q ss_pred EEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEE--------EcCCccEEEEEecCcEEEEEEEEecCceeecCC
Q 003356 36 IASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAV--------WSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGG 107 (827)
Q Consensus 36 ~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~--------wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~ 107 (827)
...|+.+.+|+.+ .....+.+.--... +..|. |-|+=+++.+.++--.|.+|-+..+....-.
T Consensus 95 iTiDn~L~lWny~-~~~e~~~~d~~sht------Il~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~-- 165 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYE-SDNELAEYDGLSHT------ILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL-- 165 (1311)
T ss_pred EEeCCeEEEEEcC-CCCccccccchhhh------heeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc--
Confidence 3457889999997 33344443322222 22222 5566677777666677888888755421100
Q ss_pred CCCCCceeeeEeeEeecccccccccceEEEee-cCCCeEEEEecCCcEEEEecCCc
Q 003356 108 KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-SDNKHMLLGLSDGSLYSISWKGE 162 (827)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~-~d~~~llv~t~dg~i~~~~w~~~ 162 (827)
..... ...+..+...|.|+. -++.+++.++.||.++.+....+
T Consensus 166 ----~~f~~--------~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~ 209 (1311)
T KOG1900|consen 166 ----SIFNT--------SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAE 209 (1311)
T ss_pred ----ccccc--------ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEecc
Confidence 00001 122334446778887 44568888989998877665543
No 463
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=33.64 E-value=1.4e+02 Score=22.71 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=30.7
Q ss_pred EEEEeCCcEEEEeeccCccccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEE
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~v 282 (827)
+++-|||++++.+..... .+..+..-+.+++||.+=.+-+.+|.+.+
T Consensus 6 ~~~q~DGkIlv~G~~~~~------------~~~~~~~l~Rln~DGsLDttFg~~G~v~~ 52 (55)
T TIGR02608 6 VAVQSDGKILVAGYVDNS------------SGNNDFVLARLNADGSLDTTFGTGGKVTF 52 (55)
T ss_pred EEECCCCcEEEEEEeecC------------CCcccEEEEEECCCCCccCCcCCCcEEEE
Confidence 457789999988764311 01123333788899888877777887653
No 464
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=33.16 E-value=44 Score=27.95 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=26.2
Q ss_pred EEEEcCCCCEEEEEeCCceEEEEcCCCeEEe
Q 003356 457 HVAASKDGMFLAVAGLHGLILYDIRQKKWRV 487 (827)
Q Consensus 457 ~va~SpdG~~lavag~dg~iiwd~~t~~w~~ 487 (827)
++..+-.|+-+|+||.+|-.+|-+.|++-+.
T Consensus 2 ~v~~~~~g~~lAiGG~~g~~~Wfvtt~~v~~ 32 (86)
T PF11090_consen 2 CVTIEHKGRPLAIGGNNGGCLWFVTTNKVKS 32 (86)
T ss_pred eEEEecCCeEEEEccccCCeEEEEECcHHhh
Confidence 4677889999999999998899998887543
No 465
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=31.84 E-value=8.3e+02 Score=28.03 Aligned_cols=128 Identities=18% Similarity=0.152 Sum_probs=0.0
Q ss_pred EEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC-CeEEeeCCccceEEE--E--EEEEEEeC------C
Q 003356 440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ-KKWRVFGDITQEQKI--Q--SKGLLWLG------K 507 (827)
Q Consensus 440 ~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t-~~w~~f~~~~~e~~~--~--v~gl~W~~------~ 507 (827)
+...++........+-..++++|.|+.++++...|.. +|.++. ..++..........+ . |.+|++.. +
T Consensus 31 ~~~~~~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~ 110 (504)
T PF10433_consen 31 QWEPLSKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDN 110 (504)
T ss_dssp EEEE---SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS
T ss_pred EeEecCCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCC
Q ss_pred EEEEEEEeeCCCcEEEEEee--------CC-CCCccc--eEEEEecCCccEEEEccCCEEEEEEcCceEEEEE
Q 003356 508 IIVVCNYIDSSNTYELLFYP--------RY-HLDQSS--LLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFH 569 (827)
Q Consensus 508 ~li~~~~~~~~~~~~lrly~--------~~-~l~~~~--~~~~~~l~~~~~~l~~~~~~llV~~~~~~i~l~~ 569 (827)
..++.=+....+...+.+|. .. +..... +-...++|.-.+-+......++|+.. .+.+|+
T Consensus 111 p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~--~~i~y~ 181 (504)
T PF10433_consen 111 PTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGGE--NIIIYK 181 (504)
T ss_dssp -EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEES--SEEEEE
T ss_pred ceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEECC--EEEEEe
No 466
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=30.96 E-value=3.1e+02 Score=26.84 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=32.9
Q ss_pred ceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCC--EEEE-E-EEeeCCCcEEEEEeeCC
Q 003356 474 GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVV-C-NYIDSSNTYELLFYPRY 529 (827)
Q Consensus 474 g~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~--~li~-~-~~~~~~~~~~lrly~~~ 529 (827)
|-+ ++|..++.|..+.....+..+.-..+.|..| ++++ | .+.--+...+|.+|+..
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~ 148 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLN 148 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEcc
Confidence 456 8898898887553332233444558999865 3333 3 12223455678888775
No 467
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=30.67 E-value=1.1e+02 Score=34.52 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=45.2
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 267 ~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
...+||+|+..|-||+||--. -+....+.+ -..+|..+..+.+|.++.+.+. ..+-+-++..
T Consensus 572 esGyIa~as~kGDirLyDRig-~rAKtalP~--------lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIG-KRAKTALPG--------LGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhc-chhhhcCcc--------cccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 356899999999999998533 222222333 4568999999999998887777 6777777753
No 468
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=30.51 E-value=8e+02 Score=27.34 Aligned_cols=147 Identities=16% Similarity=0.081 Sum_probs=71.1
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCcEE-EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc-eeEEEccCCce
Q 003356 307 TGPVSCIAWTPDNSAFAVGWKSRGLT-VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYR 384 (827)
Q Consensus 307 ~~~V~~l~~spDg~~Lasg~~Dg~v~-vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~ 384 (827)
.+....+..++||.+++.|.. |.+. -|+- +......+.-.....++++.+.+++ ..++.+. -.+.|..++++
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~-G~~~~s~d~-G~~~W~~~~~~~~~~l~~v~~~~dg----~l~l~g~~G~l~~S~d~G~ 311 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSR-GNFYLTWEP-GQPYWQPHNRASARRIQNMGWRADG----GLWLLTRGGGLYVSKGTGL 311 (398)
T ss_pred ccceeeEEEcCCCCEEEEECC-ccEEEecCC-CCcceEEecCCCccceeeeeEcCCC----CEEEEeCCceEEEecCCCC
Confidence 345566778899998888876 4432 2332 2211122222213457777777776 5555443 44555555554
Q ss_pred EE-----EEecCC--cceEEEEec--ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcE
Q 003356 385 LY-----AIEEGS--SERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (827)
Q Consensus 385 l~-----~~~~~~--~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I 455 (827)
.+ ...... ...+..+.+ .+.+..++..|.+... ..+ ...|+..+....+ ..++
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s--~D~-------------G~tW~~~~~~~~~---~~~l 373 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS--TDG-------------GKSWKRDKGADNI---AANL 373 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe--CCC-------------CcceeEccccCCC---Ccce
Confidence 32 111111 112333333 3344444444433211 011 1235443322211 2357
Q ss_pred EEEEEcCCCCEEEEEeCCceE-EE
Q 003356 456 QHVAASKDGMFLAVAGLHGLI-LY 478 (827)
Q Consensus 456 ~~va~SpdG~~lavag~dg~i-iw 478 (827)
..+.|.++++-+ +.|.+|.+ .|
T Consensus 374 y~v~f~~~~~g~-~~G~~G~il~~ 396 (398)
T PLN00033 374 YSVKFFDDKKGF-VLGNDGVLLRY 396 (398)
T ss_pred eEEEEcCCCceE-EEeCCcEEEEe
Confidence 789987776655 45678887 65
No 469
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=30.01 E-value=80 Score=22.97 Aligned_cols=32 Identities=22% Similarity=0.533 Sum_probs=23.4
Q ss_pred EEEEcCCCCEEEEEeC---C-----ceE-EEEcCCCeEEee
Q 003356 457 HVAASKDGMFLAVAGL---H-----GLI-LYDIRQKKWRVF 488 (827)
Q Consensus 457 ~va~SpdG~~lavag~---d-----g~i-iwd~~t~~w~~f 488 (827)
..+..++++.++.||. + ..+ +||.++.+|+..
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~ 45 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTEL 45 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeec
Confidence 3455678888888888 1 245 889999999854
No 470
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=29.66 E-value=7.3e+02 Score=26.63 Aligned_cols=26 Identities=27% Similarity=0.111 Sum_probs=19.7
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCc
Q 003356 449 ISQNWPVQHVAASKDGMFLAVAGLHG 474 (827)
Q Consensus 449 ~~~~~~I~~va~SpdG~~lavag~dg 474 (827)
...|.-.-.++++|||+.|.++-+..
T Consensus 143 ~~~N~G~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 143 RRNNRGFEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred ccCCCCeEEEEECCCCCEEEEEECcc
Confidence 34566789999999999777765543
No 471
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=29.31 E-value=8.6e+02 Score=27.35 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=32.1
Q ss_pred EE-EEEcCCCCEEEEEe-cCCeEEEEEcCCCCcceEEEEe---ecC-----CCCC--CCCCCeEEEEECCCCCEEEEE
Q 003356 260 VC-ASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSL---YDW-----GYSM--DDTGPVSCIAWTPDNSAFAVG 325 (827)
Q Consensus 260 v~-va~sp~~~lla~g~-~dg~v~vw~~~~~~~~~~~l~~---~~~-----~~~~--~h~~~V~~l~~spDg~~Lasg 325 (827)
++ +.+|.|.++|-+.+ .+|.||.||+.+......+-+. ... +... .-.|...-+..|-||++|-+.
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 45 88999999887655 5899999999984333222111 000 0000 112345678888888877554
No 472
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=29.28 E-value=1.2e+03 Score=28.86 Aligned_cols=76 Identities=14% Similarity=0.044 Sum_probs=38.7
Q ss_pred EEEEEEcCCcceEEEEEeCCcEEEEeeccCcccccee--eccceecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCC
Q 003356 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF--IKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE 287 (827)
Q Consensus 211 i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~ 287 (827)
+..+........+++++.+|+++.....+-...-+.. ...-.+..-+..+. +.++ +...+...+.+|.++...+.+
T Consensus 641 lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~-~~~~ll~vT~~G~~Kr~~l~e 719 (800)
T TIGR01063 641 LISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVS-EESYLLIVTENGYGKRTSIEE 719 (800)
T ss_pred EEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEec-cccEEEEEecCCcEEEEEHHH
Confidence 4444444444567889999998876554321111111 00001112122333 3333 345677788888887766543
No 473
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=28.30 E-value=1.1e+03 Score=28.50 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=38.4
Q ss_pred EEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe-ecCCCeEEEEecCC
Q 003356 74 VWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDNKHMLLGLSDG 152 (827)
Q Consensus 74 ~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~~d~~~llv~t~dg 152 (827)
.+-|+-.++++.|.+|+|+--....-.. . .+.++..+.-+..+ +...+.+++.|++|
T Consensus 489 ~~i~~e~v~VilTk~G~IKr~~~~~~~~--------------s--------aikLKegD~L~~~~~~~t~d~LllfTs~G 546 (735)
T TIGR01062 489 DMIPKEPVTIILSKMGWVRSAKGHDIDL--------------S--------TLKYKAGDSEKAIIEGKSNQKVVFIDSTG 546 (735)
T ss_pred hcccCcceEEEEecCCEEEeccccccch--------------h--------ccCcCCCCeEEEEEEecCCCEEEEEECCC
Confidence 3567888999999999997655531110 0 11122222233333 33446899999999
Q ss_pred cEEEEec
Q 003356 153 SLYSISW 159 (827)
Q Consensus 153 ~i~~~~w 159 (827)
.+..+..
T Consensus 547 r~yrf~v 553 (735)
T TIGR01062 547 RSYALDP 553 (735)
T ss_pred eEEEEEh
Confidence 9887754
No 474
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=27.86 E-value=7.8e+02 Score=29.68 Aligned_cols=49 Identities=10% Similarity=0.253 Sum_probs=34.0
Q ss_pred EEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEc
Q 003356 26 YFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWS 76 (827)
Q Consensus 26 ~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wS 76 (827)
+.|.|-+.+|+++ ++.|.+.+- --.++..+.-....+.++|.-..+-|-
T Consensus 119 ~wS~DE~~~cvvt~~r~il~~~k--~fd~ise~~L~~~dl~ef~khi~VgWg 168 (1243)
T COG5290 119 SWSADEKTWCVVTSTREILLFDK--YFDPISEYHLKKSDLVEFGKHIRVGWG 168 (1243)
T ss_pred eeccCCceEEEEEcCceEEEEec--cccccchhhcchhHHHHhccceEeeec
Confidence 4788888888884 566777654 345666665555666678887788884
No 475
>PF05907 DUF866: Eukaryotic protein of unknown function (DUF866); InterPro: IPR008584 This family consists of a number of hypothetical eukaryotic proteins of unknown function with an average length of around 165 residues.; PDB: 1ZSO_B.
Probab=25.98 E-value=1.6e+02 Score=28.03 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=29.2
Q ss_pred EEEEEEcCCCCEEEEEeCCceE--EEEcCCCeEEeeCCccceEEEEEEEEEE
Q 003356 455 VQHVAASKDGMFLAVAGLHGLI--LYDIRQKKWRVFGDITQEQKIQSKGLLW 504 (827)
Q Consensus 455 I~~va~SpdG~~lavag~dg~i--iwd~~t~~w~~f~~~~~e~~~~v~gl~W 504 (827)
+.-+.|+|++.+.|++...|.. =.|+..+.|.-+..... .++.|..+.|
T Consensus 105 ~e~~~f~p~~~~~~~~~esG~~f~~vdL~e~eW~dYDek~~-~~V~I~~~~~ 155 (161)
T PF05907_consen 105 LEPVEFSPRGGWVAVSVESGTKFEDVDLSEGEWYDYDEKAG-EEVSITEFEW 155 (161)
T ss_dssp EEEEEE---S-EEEEET-TS-EEEEE--TTS-EEEEETTTT-EEEEEEEEEE
T ss_pred cEeEEEecCCcEEEEEecCCCEEEeccCCCCceeeeccCCC-ceEEEEEEEE
Confidence 4557899999999999877877 57888999998865543 3455666666
No 476
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=25.91 E-value=9e+02 Score=26.47 Aligned_cols=54 Identities=17% Similarity=0.403 Sum_probs=33.2
Q ss_pred EcCCCCEEEEEeCCc----------------------eE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEE
Q 003356 460 ASKDGMFLAVAGLHG----------------------LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNY 514 (827)
Q Consensus 460 ~SpdG~~lavag~dg----------------------~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~ 514 (827)
...+|+.++.||.+. .+ +||+++++|+......+.+... ......+.+++.|+.
T Consensus 276 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~-~av~~~~~iyv~GG~ 352 (376)
T PRK14131 276 GYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYG-VSVSWNNGVLLIGGE 352 (376)
T ss_pred eeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccce-EEEEeCCEEEEEcCC
Confidence 345778888888641 35 8999999998765443333211 233445666777643
No 477
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.54 E-value=1e+03 Score=30.10 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=31.5
Q ss_pred eeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEe
Q 003356 447 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (827)
Q Consensus 447 ~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~ 487 (827)
.+..+.+.+.....+++|..++++-.||.. .||...++-+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~~~ 270 (993)
T KOG1983|consen 229 KYVQSAYLPNGQLESRDGSHFVSYHTDGSYAFWDVSSGKLQI 270 (993)
T ss_pred ccchhhcccccccCccCCceEEEEEecCCEEeeecCCCceee
Confidence 344555555555559999999999999999 99999986543
No 478
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=25.52 E-value=1.2e+03 Score=27.80 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=26.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 453 ~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
..|..+-|.++++.+++.-++|.+ +||...
T Consensus 130 ~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~ 160 (670)
T PF10395_consen 130 DKVVGIKFSSDGKIIYVVLENGSIQIYDFSE 160 (670)
T ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEeccc
Confidence 468889999999999999999999 999933
No 479
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=25.36 E-value=1.5e+02 Score=18.80 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=17.9
Q ss_pred cEEEEcCCccEEEEEecCcEEEEE
Q 003356 71 LQAVWSPDTKLIAVVTSSLYLHIF 94 (827)
Q Consensus 71 ~~v~wSPDg~~lav~t~dg~l~l~ 94 (827)
.+++.+++|..+++=+....|++|
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 467788888888877777777664
No 480
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=25.33 E-value=9.5e+02 Score=26.53 Aligned_cols=207 Identities=15% Similarity=0.087 Sum_probs=0.0
Q ss_pred cCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecC----
Q 003356 76 SPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD---- 151 (827)
Q Consensus 76 SPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~d---- 151 (827)
.|..++|.....++-|.+||++....+....+ .+.++++ ...+.+.+....+ ++++..
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~G------r~NNVDv--rygf~l~g~~vDl----------avas~R~~g~ 126 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKELQSLPVG------RPNNVDV--RYGFPLNGKTVDL----------AVASDRSDGR 126 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-------EEEEEE--EEEEEETTEEEEE----------EEEEE-CCCT
T ss_pred CcccceEEEEeCCCCEEEEcCCCcEEEeecCC------Ccceeee--ecceecCCceEEE----------EEEecCcCCC
Q ss_pred CcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEe-CC
Q 003356 152 GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NG 230 (827)
Q Consensus 152 g~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~-dG 230 (827)
..|.+|..++.... ............-.+...+..++.-++ +|
T Consensus 127 n~l~~f~id~~~g~------------------------------------L~~v~~~~~p~~~~~~e~yGlcly~~~~~g 170 (381)
T PF02333_consen 127 NSLRLFRIDPDTGE------------------------------------LTDVTDPAAPIATDLSEPYGLCLYRSPSTG 170 (381)
T ss_dssp -EEEEEEEETTTTE------------------------------------EEE-CBTTC-EE-SSSSEEEEEEEE-TTT-
T ss_pred CeEEEEEecCCCCc------------------------------------ceEcCCCCcccccccccceeeEEeecCCCC
Q ss_pred cEEEEeec-cCccccceeecccee---------cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 231 QLMSCSVS-KKGLKLAEFIKIDKE---------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 231 ~~~~~~~~-~~~~~~~~~~~~~~~---------~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
++++.... ++.+.+|.+.....- ..-..-+. |++......|..|-+|--|.-|+.+.......++-..-
T Consensus 171 ~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~ 250 (381)
T PF02333_consen 171 ALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA 250 (381)
T ss_dssp -EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB
T ss_pred cEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecc
Q ss_pred CCCCCCCCCCeEEEEE----CCCCCEEEEEEcCCcEEEEeccC
Q 003356 300 WGYSMDDTGPVSCIAW----TPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~----spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
-+.. ....|-.|+. .-+|++|||.-.+++..||+..+
T Consensus 251 ~g~~--l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 251 DGDG--LVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp SSSS--B-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred cccc--cccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
No 481
>PRK10115 protease 2; Provisional
Probab=24.59 E-value=1.3e+03 Score=27.84 Aligned_cols=105 Identities=5% Similarity=-0.058 Sum_probs=56.1
Q ss_pred EEEEeCCcEEEEeeccCc-----cccceeeccceecC-CCCc-EEEEEcCCCCEEEEEecC------CeEEEEEcCCCC-
Q 003356 224 FVLYSNGQLMSCSVSKKG-----LKLAEFIKIDKELG-SGDA-VCASIAPEQQILAVGTRR------GVVELYDLAESA- 289 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~-----~~~~~~~~~~~~~~-h~~~-v~va~sp~~~lla~g~~d------g~v~vw~~~~~~- 289 (827)
..++|||+.++.+.+... +.+.+..++..+.. .... ..++|.+|++.|+....+ ..|..+++.+..
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence 346889998887765432 33334333331111 1111 238999999877766543 367778887632
Q ss_pred cceEEEEeecCCCCCCCCCCeE-EEEECCCCCEEEEEEc---CCcEEEEec
Q 003356 290 SLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWK---SRGLTVWSV 336 (827)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~-~l~~spDg~~Lasg~~---Dg~v~vWs~ 336 (827)
+....+.. ..+... .+..+.|+++++..+. ++.+.+++.
T Consensus 212 ~d~lv~~e--------~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 212 QDELVYEE--------KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred HCeEEEee--------CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 22223333 122233 3334558887665543 346778774
No 482
>PLN02153 epithiospecifier protein
Probab=24.28 E-value=9.1e+02 Score=25.93 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=22.0
Q ss_pred EcCCCCEEEEEeCCc-----------eE-EEEcCCCeEEeeCC
Q 003356 460 ASKDGMFLAVAGLHG-----------LI-LYDIRQKKWRVFGD 490 (827)
Q Consensus 460 ~SpdG~~lavag~dg-----------~i-iwd~~t~~w~~f~~ 490 (827)
..-+++..+.||.+. .+ +||..+++|.....
T Consensus 134 ~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~ 176 (341)
T PLN02153 134 ASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPD 176 (341)
T ss_pred EEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCC
Confidence 344667777787641 36 89999999987543
No 483
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=24.09 E-value=1.6e+03 Score=28.72 Aligned_cols=33 Identities=18% Similarity=0.494 Sum_probs=21.2
Q ss_pred CcccccCce-eecCCCCCCCCCceEEEEEecceEEEEEc
Q 003356 1 MYMAYGWPQ-VIPLEQGLCPSSQQIIYFKVNNGLLLIAS 38 (827)
Q Consensus 1 my~~~gwp~-~~~~~~~~~~~~~~vv~fspdg~lla~~~ 38 (827)
|||.-+||- -++++.. ... +++.+..++.+.++
T Consensus 939 ~~Ydn~wPvkkIpl~~T----~~~-vvYh~e~~vy~v~t 972 (1366)
T KOG1896|consen 939 LSYDNKWPVKKIPLRKT----PHQ-VVYHYEKKVYAVIT 972 (1366)
T ss_pred cccCCCCcccccccccc----hhh-eeeeccceEEEEEE
Confidence 688889995 5677743 233 34567777766665
No 484
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=23.76 E-value=1.6e+02 Score=36.19 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 307 ~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
.=+|.-++-.+||.++|+++. .+...+++..
T Consensus 340 nwpiry~s~~~dg~~lavAgl-~gla~y~~~~ 370 (1023)
T KOG2006|consen 340 NWPIRYVSIDYDGKHLAVAGL-HGLARYSLSS 370 (1023)
T ss_pred cCceeEEeecCCccEEEEeec-ccceEEEeec
Confidence 347888999999999999998 5566666543
No 485
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=23.65 E-value=14 Score=22.53 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=6.9
Q ss_pred EEEecceEE
Q 003356 26 YFKVNNGLL 34 (827)
Q Consensus 26 ~fspdg~ll 34 (827)
-|||+|+++
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 489999864
No 486
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=23.23 E-value=66 Score=30.93 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=32.9
Q ss_pred ccccceeecCc-cEEEEEeeeeeeccccccceeeecCcccchHHH
Q 003356 720 EVYPLGLLPNA-GVVVGVSQRMSFSACTEFPCFEPTPQAQTILHC 763 (827)
Q Consensus 720 ~~YPl~v~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 763 (827)
+-||+.|+.++ |.++|--. +..+.++|-|+.+...-+|++.
T Consensus 50 ~g~p~~V~~~~~g~v~G~a~---~~~fr~r~ay~~tve~SiYv~~ 91 (169)
T COG1247 50 DGYPVVVAEEEDGKVLGYAS---AGPFRERPAYRHTVELSIYLDP 91 (169)
T ss_pred CCceEEEEEcCCCeEEEEEE---eeeccCccccceEEEEEEEECc
Confidence 46999999987 99999883 3334478888888899999984
No 487
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.08 E-value=88 Score=29.35 Aligned_cols=32 Identities=28% Similarity=0.280 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHcCCCCCch----------hHHHHHhhhhhhc
Q 003356 772 DKIEEALRLAQLSAEKPHFS----------HCLEWLLFTVFDA 804 (827)
Q Consensus 772 ~~~~~a~~~a~~~~~l~~f~----------h~LE~Llh~vle~ 804 (827)
-.-.+|.++|..|. ||||. .|.|.||--|++.
T Consensus 142 Vs~~qa~~La~kyg-lPYfETSA~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 142 VSEDQAAALADKYG-LPYFETSACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred hhHHHHHHHHHHhC-CCeeeeccccCcCHHHHHHHHHHHHHHH
Confidence 35678999999996 99994 6899999888753
No 488
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=22.03 E-value=9.1e+02 Score=25.14 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=64.5
Q ss_pred EEEEeCCcEEEEeeccC--ccccceeecccee----cCC---CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEE
Q 003356 224 FVLYSNGQLMSCSVSKK--GLKLAEFIKIDKE----LGS---GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~--~~~~~~~~~~~~~----~~h---~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~ 294 (827)
+.+..||.++-++..-+ .++.++..+++.. ... ... +++- +.++.-.-..+++..+||.++ -+.+.+
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEG--it~~-~d~l~qLTWk~~~~f~yd~~t-l~~~~~ 125 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEG--ITIL-GDKLYQLTWKEGTGFVYDPNT-LKKIGT 125 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEE--EEEE-TTEEEEEESSSSEEEEEETTT-TEEEEE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccccee--EEEE-CCEEEEEEecCCeEEEEcccc-ceEEEE
Confidence 34557888888776544 3455555554322 110 111 2222 456666778899999999987 666666
Q ss_pred EEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
+.- .+.=+.++ .||+.|..+.....+..+|..+-+...++.
T Consensus 126 ~~y---------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 126 FPY---------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EE----------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred Eec---------CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE
Confidence 653 33335565 788888887777899999988766555543
No 489
>PRK13613 lipoprotein LpqB; Provisional
Probab=20.79 E-value=5.4e+02 Score=30.43 Aligned_cols=74 Identities=8% Similarity=0.111 Sum_probs=42.0
Q ss_pred eEEEEEecceEEEEEcc----CeEEEeecCC--ce-eEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCc-EEEEE
Q 003356 23 QIIYFKVNNGLLLIASP----CHIELWSSSQ--HK-VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSL-YLHIF 94 (827)
Q Consensus 23 ~vv~fspdg~lla~~~~----~~v~IW~~~~--~~-~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg-~l~l~ 94 (827)
..+..|+||...|++.+ ++|.|=-+.. .+ ..|.....-. ..-+.++++.|..|++.++.++..+ ...+|
T Consensus 458 ~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~---~~l~~v~~~~W~~~~sL~Vlg~~~~~~~~v~ 534 (599)
T PRK13613 458 VAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLA---PELEDVTDMSWAGDSQLVVLGREEGGVQQAR 534 (599)
T ss_pred EEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEec---cCCCccceeEEcCCCEEEEEeccCCCCcceE
Confidence 33778999988777643 4444433211 11 1222221111 1235688999999999877665443 55566
Q ss_pred EEEec
Q 003356 95 KVQIT 99 (827)
Q Consensus 95 ~v~~~ 99 (827)
.+..+
T Consensus 535 ~v~vd 539 (599)
T PRK13613 535 YVQVD 539 (599)
T ss_pred EEecC
Confidence 66543
No 490
>PRK05560 DNA gyrase subunit A; Validated
Probab=20.66 E-value=1.6e+03 Score=27.60 Aligned_cols=221 Identities=12% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCC-CeEEEEecCCcEE
Q 003356 77 PDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLY 155 (827)
Q Consensus 77 PDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~-~~llv~t~dg~i~ 155 (827)
++-..+++.|.+|+++--.+..-..+...+ .......+...+.-...+.+.. +.+++.|+.|.+.
T Consensus 496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~--------------~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~ 561 (805)
T PRK05560 496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGG--------------KGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVY 561 (805)
T ss_pred CCCCEEEEEeCCCEEEEcchhhhhhhcccC--------------CCccccccCCCCeeEEEEEecCCCeEEEEecCCeEE
Q ss_pred EEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcC---CcceEEEEEeCCcE
Q 003356 156 SISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL---PMRLLFVLYSNGQL 232 (827)
Q Consensus 156 ~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~~~~~~~s~dG~~ 232 (827)
.+.+..-..... ...+......+....+.+ |+.+.--. .....+.++.+|..
T Consensus 562 ~l~v~~iP~~~~----~~~G~~i~~ll~L~~~E~---------------------Iv~~i~~~~~~~e~~lvlvTk~Gyi 616 (805)
T PRK05560 562 RLKVYEIPEASR----TARGRPIVNLLPLEPGEK---------------------ITAILPVREFDDDKYLFFATKNGTV 616 (805)
T ss_pred EEEhhhCcCCCc----CCCCeEHHHhcCCCCCce---------------------EEEEEeccCCCCCCEEEEEeCCCEE
Q ss_pred EEEeeccCccccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEE
Q 003356 233 MSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC 312 (827)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~ 312 (827)
--+...+....--.....-.+......+.+........++..+..|.+..+.+.+-...-+.-.+...-.......-+..
T Consensus 617 KRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~ 696 (805)
T PRK05560 617 KKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSM 696 (805)
T ss_pred EEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEE
Q ss_pred EEECCCCCEEEEEEcCCcEEEEec
Q 003356 313 IAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 313 l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
+.+.+++..++..+..|.++-.++
T Consensus 697 ~~v~~~~~~il~vTk~G~iKr~~l 720 (805)
T PRK05560 697 DVVREDSQEILTVTENGYGKRTPV 720 (805)
T ss_pred EEEcCCCcEEEEEEeCCeEEEEEH
No 491
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=20.10 E-value=1.3e+03 Score=26.00 Aligned_cols=62 Identities=19% Similarity=0.152 Sum_probs=32.7
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEE
Q 003356 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (827)
Q Consensus 257 ~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~La 323 (827)
.+.|++++|-....+++++.. ....||..+ +.+..+.... .+..-.-+.|..++|. ||+++.
T Consensus 89 sgrVsMah~~~sq~V~i~G~~-~gYrYdgat--~~l~~~~~~~-~~p~y~~g~v~Dv~~~-dGryVw 150 (469)
T PF11134_consen 89 SGRVSMAHSGGSQAVAINGKL-KGYRYDGAT--KTLSNWPTDE-GYPQYDLGDVVDVTRL-DGRYVW 150 (469)
T ss_pred CceEEEEeCCceeEEEEcccc-ceEEEechh--hHhhcCCCcC-cccccCccceeEEEec-cceEEE
Confidence 567888888777777765532 344555543 2222111100 0111134567888876 666654
Done!