Query 003356
Match_columns 827
No_of_seqs 547 out of 3602
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 22:29:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 6.4E-38 2.2E-42 370.0 49.9 460 21-570 20-609 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 7.2E-37 2.5E-41 357.8 50.2 482 22-569 19-577 (577)
3 1nr0_A Actin interacting prote 100.0 3.2E-35 1.1E-39 346.9 41.2 397 22-528 62-609 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 9E-35 3.1E-39 340.0 44.2 442 23-527 61-577 (577)
5 1pgu_A Actin interacting prote 100.0 1.2E-32 4.1E-37 323.9 49.8 457 22-571 21-613 (615)
6 3sfz_A APAF-1, apoptotic pepti 100.0 3.3E-33 1.1E-37 356.8 41.1 498 22-570 618-1247(1249)
7 2oaj_A Protein SNI1; WD40 repe 100.0 5.8E-31 2E-35 322.7 41.4 410 21-486 19-668 (902)
8 4g56_B MGC81050 protein; prote 100.0 5E-31 1.7E-35 289.6 25.6 319 25-483 11-344 (357)
9 1got_B GT-beta; complex (GTP-b 100.0 6.8E-30 2.3E-34 278.4 32.8 279 66-479 54-340 (340)
10 3ow8_A WD repeat-containing pr 100.0 5.4E-30 1.9E-34 276.9 31.2 274 129-480 29-319 (321)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-29 4.1E-34 277.1 33.3 303 68-484 17-337 (345)
12 1vyh_C Platelet-activating fac 100.0 2.6E-29 8.7E-34 281.4 34.3 277 128-480 104-409 (410)
13 4gqb_B Methylosome protein 50; 100.0 6E-30 2.1E-34 279.2 28.0 225 226-484 90-333 (344)
14 3frx_A Guanine nucleotide-bind 100.0 9E-29 3.1E-33 267.0 36.5 288 66-483 16-318 (319)
15 2pbi_B Guanine nucleotide-bind 100.0 4E-29 1.4E-33 274.0 32.6 284 66-479 63-354 (354)
16 2oaj_A Protein SNI1; WD40 repe 100.0 3.8E-28 1.3E-32 297.8 44.7 489 22-570 61-826 (902)
17 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-28 4.1E-33 300.4 37.7 273 21-382 15-302 (814)
18 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-28 4.6E-33 314.2 39.4 425 66-571 614-1115(1249)
19 2ynn_A Coatomer subunit beta'; 100.0 9.6E-29 3.3E-33 264.8 30.9 279 128-482 9-302 (304)
20 3ow8_A WD repeat-containing pr 100.0 2E-28 7E-33 264.5 33.2 273 66-419 31-319 (321)
21 1r5m_A SIR4-interacting protei 100.0 2.6E-28 9E-33 272.3 35.0 338 66-481 44-424 (425)
22 3iz6_a 40S ribosomal protein R 100.0 4.5E-29 1.5E-33 276.4 28.0 295 66-484 65-377 (380)
23 1pgu_A Actin interacting prote 100.0 4.8E-28 1.7E-32 284.6 36.7 396 22-482 67-614 (615)
24 2hes_X YDR267CP; beta-propelle 100.0 3.9E-28 1.3E-32 263.4 33.1 285 128-482 10-328 (330)
25 3vl1_A 26S proteasome regulato 100.0 7.3E-29 2.5E-33 277.6 27.4 330 69-482 58-419 (420)
26 2pm9_A Protein WEB1, protein t 100.0 2E-29 6.8E-34 281.5 21.3 345 67-483 12-415 (416)
27 1vyh_C Platelet-activating fac 100.0 2.1E-28 7.2E-33 273.9 29.7 270 67-419 108-409 (410)
28 4gqb_B Methylosome protein 50; 100.0 3.1E-28 1.1E-32 265.6 30.2 276 23-384 34-333 (344)
29 4aow_A Guanine nucleotide-bind 100.0 1.9E-27 6.5E-32 257.5 35.9 290 66-484 37-339 (340)
30 1got_B GT-beta; complex (GTP-b 100.0 8.4E-28 2.9E-32 261.8 32.6 273 23-379 59-340 (340)
31 1erj_A Transcriptional repress 100.0 1.8E-27 6.2E-32 264.7 34.4 224 224-482 129-389 (393)
32 2ynn_A Coatomer subunit beta'; 100.0 4.7E-28 1.6E-32 259.5 28.0 236 206-485 11-262 (304)
33 4h5i_A Guanine nucleotide-exch 100.0 4.6E-28 1.6E-32 266.7 26.5 302 69-483 16-344 (365)
34 1gxr_A ESG1, transducin-like e 100.0 1.8E-27 6.1E-32 257.0 29.4 311 68-480 10-335 (337)
35 4g56_B MGC81050 protein; prote 100.0 9.5E-28 3.2E-32 263.4 27.4 274 23-380 46-341 (357)
36 4ery_A WD repeat-containing pr 100.0 7E-27 2.4E-31 250.8 33.5 275 128-481 19-311 (312)
37 3mkq_A Coatomer beta'-subunit; 100.0 1.8E-26 6.3E-31 281.1 40.7 401 67-571 13-459 (814)
38 1erj_A Transcriptional repress 100.0 5.6E-27 1.9E-31 260.8 32.4 284 21-421 66-389 (393)
39 2pbi_B Guanine nucleotide-bind 100.0 1.7E-26 5.7E-31 253.1 33.8 278 22-379 67-354 (354)
40 2hes_X YDR267CP; beta-propelle 100.0 1.3E-26 4.4E-31 251.4 31.4 282 205-529 11-327 (330)
41 3gre_A Serine/threonine-protei 100.0 6.4E-28 2.2E-32 271.8 20.4 368 25-479 33-437 (437)
42 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.7E-26 9.2E-31 250.5 32.3 284 223-529 21-334 (345)
43 2xzm_R RACK1; ribosome, transl 100.0 2.5E-26 8.7E-31 250.4 31.4 296 127-483 16-341 (343)
44 1gxr_A ESG1, transducin-like e 100.0 7.2E-26 2.5E-30 244.3 34.3 312 22-420 12-336 (337)
45 3frx_A Guanine nucleotide-bind 99.9 1.1E-25 3.9E-30 242.7 33.3 271 253-571 13-316 (319)
46 1k8k_C P40, ARP2/3 complex 41 99.9 9.6E-26 3.3E-30 247.4 32.4 317 67-484 8-363 (372)
47 3iz6_a 40S ribosomal protein R 99.9 2.9E-26 9.8E-31 253.8 28.2 292 22-383 69-376 (380)
48 3dm0_A Maltose-binding peripla 99.9 8.1E-26 2.8E-30 270.7 34.3 297 66-481 381-692 (694)
49 1r5m_A SIR4-interacting protei 99.9 1.6E-25 5.6E-30 249.7 32.8 326 22-419 48-423 (425)
50 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1E-25 3.5E-30 254.7 31.2 298 74-482 124-442 (445)
51 2pm9_A Protein WEB1, protein t 99.9 5.8E-27 2E-31 261.4 20.2 325 23-420 16-413 (416)
52 2j04_B YDR362CP, TAU91; beta p 99.9 9.5E-27 3.3E-31 267.3 22.3 229 206-482 264-517 (524)
53 4e54_B DNA damage-binding prot 99.9 1.2E-26 4.1E-31 261.8 22.3 302 68-485 120-433 (435)
54 2pm7_B Protein transport prote 99.9 2.1E-25 7.1E-30 238.0 29.9 249 205-488 6-292 (297)
55 3ei3_B DNA damage-binding prot 99.9 2E-25 6.7E-30 246.8 29.3 293 67-482 73-382 (383)
56 2j04_A TAU60, YPL007P, hypothe 99.9 9.5E-27 3.2E-31 261.3 18.7 236 208-472 85-350 (588)
57 3zwl_B Eukaryotic translation 99.9 5E-25 1.7E-29 240.7 31.7 293 66-484 31-348 (369)
58 2xzm_R RACK1; ribosome, transl 99.9 4.6E-25 1.6E-29 240.5 31.2 279 67-423 21-342 (343)
59 3bg1_A Protein SEC13 homolog; 99.9 7.5E-26 2.6E-30 243.7 23.6 248 205-488 10-300 (316)
60 2j04_B YDR362CP, TAU91; beta p 99.9 2.7E-26 9.1E-31 263.6 20.7 318 29-419 171-515 (524)
61 4aow_A Guanine nucleotide-bind 99.9 9.5E-25 3.2E-29 236.2 31.1 284 2-362 19-318 (340)
62 3vl1_A 26S proteasome regulato 99.9 3.4E-25 1.2E-29 247.7 28.4 306 224-571 62-418 (420)
63 3i2n_A WD repeat-containing pr 99.9 1.8E-24 6.3E-29 235.5 32.2 306 66-483 17-354 (357)
64 3v7d_B Cell division control p 99.9 2.3E-24 7.7E-29 244.8 34.0 310 129-527 118-462 (464)
65 4ery_A WD repeat-containing pr 99.9 2E-24 6.8E-29 231.7 31.6 273 254-570 20-310 (312)
66 3dw8_B Serine/threonine-protei 99.9 1.8E-24 6.1E-29 243.8 30.3 344 22-480 31-444 (447)
67 3dwl_C Actin-related protein 2 99.9 1.3E-25 4.5E-30 247.4 19.7 236 67-381 11-280 (377)
68 4aez_A CDC20, WD repeat-contai 99.9 7.7E-24 2.6E-28 235.9 32.9 273 134-484 95-382 (401)
69 4gga_A P55CDC, cell division c 99.9 7.6E-24 2.6E-28 237.5 32.6 273 23-384 109-397 (420)
70 3k26_A Polycomb protein EED; W 99.9 1.3E-24 4.6E-29 237.2 25.8 284 129-482 15-366 (366)
71 3odt_A Protein DOA1; ubiquitin 99.9 1.1E-23 3.7E-28 224.8 31.7 272 22-385 21-299 (313)
72 1sq9_A Antiviral protein SKI8; 99.9 5.1E-24 1.7E-28 236.1 29.7 291 128-484 12-397 (397)
73 3i2n_A WD repeat-containing pr 99.9 5.8E-24 2E-28 231.5 28.1 288 22-384 21-355 (357)
74 3v7d_B Cell division control p 99.9 3.8E-23 1.3E-27 234.7 35.8 321 25-418 126-460 (464)
75 4a11_B DNA excision repair pro 99.9 6.3E-24 2.1E-28 235.6 28.5 309 66-484 42-367 (408)
76 2ovr_B FBW7, F-BOX/WD repeat p 99.9 9.2E-23 3.2E-27 230.4 38.6 311 129-529 115-441 (445)
77 4ggc_A P55CDC, cell division c 99.9 3.4E-23 1.2E-27 221.7 32.8 271 23-382 29-315 (318)
78 1k8k_C P40, ARP2/3 complex 41 99.9 1.2E-23 4.1E-28 230.6 29.2 233 224-488 14-282 (372)
79 3dm0_A Maltose-binding peripla 99.9 2E-23 6.7E-28 250.0 33.5 273 254-571 379-692 (694)
80 3dwl_C Actin-related protein 2 99.9 2.3E-24 7.8E-29 237.4 23.0 235 224-488 17-287 (377)
81 2pm7_B Protein transport prote 99.9 8E-24 2.7E-28 225.7 26.4 240 254-529 6-284 (297)
82 4h5i_A Guanine nucleotide-exch 99.9 3.4E-24 1.1E-28 235.8 23.7 278 22-380 17-341 (365)
83 3gre_A Serine/threonine-protei 99.9 7E-24 2.4E-28 238.7 26.7 324 22-418 66-437 (437)
84 3f3f_A Nucleoporin SEH1; struc 99.9 1.3E-23 4.4E-28 226.9 27.3 264 205-487 8-343 (351)
85 4e54_B DNA damage-binding prot 99.9 6.6E-24 2.2E-28 239.3 26.0 283 23-385 123-433 (435)
86 3zwl_B Eukaryotic translation 99.9 7.7E-23 2.6E-27 223.3 32.7 284 22-382 35-346 (369)
87 3odt_A Protein DOA1; ubiquitin 99.9 3.8E-23 1.3E-27 220.6 29.0 272 128-486 14-300 (313)
88 3ei3_B DNA damage-binding prot 99.9 2.9E-23 1E-27 229.3 28.3 280 22-382 76-382 (383)
89 4gq1_A NUP37; propeller, trans 99.9 1.6E-23 5.3E-28 232.9 25.4 224 224-480 95-387 (393)
90 4gga_A P55CDC, cell division c 99.9 8.1E-23 2.8E-27 229.2 30.7 233 207-483 146-396 (420)
91 4aez_A CDC20, WD repeat-contai 99.9 1.7E-22 5.7E-27 225.1 32.5 272 27-387 99-385 (401)
92 3k26_A Polycomb protein EED; W 99.9 1.6E-23 5.4E-28 228.7 23.6 289 206-528 16-364 (366)
93 1p22_A F-BOX/WD-repeat protein 99.9 4.3E-23 1.5E-27 232.5 27.0 274 130-484 131-416 (435)
94 1sq9_A Antiviral protein SKI8; 99.9 3E-22 1E-26 221.8 31.4 285 66-422 15-396 (397)
95 3bg1_A Protein SEC13 homolog; 99.9 3.2E-23 1.1E-27 223.1 21.5 240 254-529 10-292 (316)
96 3jrp_A Fusion protein of prote 99.9 1.8E-22 6.2E-27 221.4 27.8 245 205-488 8-294 (379)
97 4ggc_A P55CDC, cell division c 99.9 6.7E-22 2.3E-26 211.6 30.3 234 207-482 66-315 (318)
98 1yfq_A Cell cycle arrest prote 99.9 1.1E-21 3.9E-26 212.3 30.1 272 66-418 10-321 (342)
99 2j04_A TAU60, YPL007P, hypothe 99.9 4E-23 1.4E-27 232.0 19.1 280 136-508 21-342 (588)
100 2w18_A PALB2, fancn, partner a 99.9 4.9E-22 1.7E-26 210.0 26.0 183 266-480 143-355 (356)
101 3vu4_A KMHSV2; beta-propeller 99.9 3.6E-22 1.2E-26 218.7 25.9 291 67-482 19-336 (355)
102 1yfq_A Cell cycle arrest prote 99.9 5.7E-22 2E-26 214.6 26.9 275 22-373 14-311 (342)
103 2aq5_A Coronin-1A; WD40 repeat 99.9 1.7E-22 5.8E-27 225.0 23.0 268 224-529 40-341 (402)
104 1p22_A F-BOX/WD-repeat protein 99.9 6.2E-22 2.1E-26 223.0 27.3 260 74-424 138-417 (435)
105 3dw8_B Serine/threonine-protei 99.9 1.1E-22 3.7E-27 229.2 20.9 245 207-487 27-378 (447)
106 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1E-20 3.6E-25 214.0 36.0 274 21-362 6-366 (450)
107 4a11_B DNA excision repair pro 99.9 1.4E-21 4.7E-26 216.7 28.0 320 22-420 46-404 (408)
108 3jrp_A Fusion protein of prote 99.9 1.6E-21 5.3E-26 213.9 27.6 240 254-529 8-286 (379)
109 3f3f_A Nucleoporin SEH1; struc 99.9 1.8E-21 6.1E-26 210.0 27.3 289 66-424 10-340 (351)
110 2aq5_A Coronin-1A; WD40 repeat 99.9 1.2E-21 4.1E-26 218.1 25.3 239 205-485 78-345 (402)
111 3vu4_A KMHSV2; beta-propeller 99.9 2.3E-20 7.7E-25 204.3 33.5 228 21-339 21-272 (355)
112 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.4E-21 8.3E-26 219.2 26.5 259 256-529 101-390 (450)
113 3mmy_A MRNA export factor; mRN 99.9 1.4E-20 4.9E-25 205.2 30.5 268 22-373 42-334 (368)
114 3mmy_A MRNA export factor; mRN 99.9 5.5E-21 1.9E-25 208.5 26.9 275 205-515 36-336 (368)
115 3jro_A Fusion protein of prote 99.9 2.1E-21 7.1E-26 234.3 23.0 252 205-491 6-295 (753)
116 3lrv_A PRE-mRNA-splicing facto 99.9 9.9E-21 3.4E-25 206.0 21.7 189 255-480 123-331 (343)
117 2xyi_A Probable histone-bindin 99.9 4.2E-20 1.4E-24 207.7 25.6 244 223-485 133-413 (430)
118 1l0q_A Surface layer protein; 99.9 1.2E-18 4.1E-23 192.5 36.5 270 31-393 2-286 (391)
119 3lrv_A PRE-mRNA-splicing facto 99.8 5.3E-20 1.8E-24 200.2 23.8 230 226-487 44-299 (343)
120 3jro_A Fusion protein of prote 99.8 3.2E-20 1.1E-24 223.8 23.5 242 254-529 6-284 (753)
121 2xyi_A Probable histone-bindin 99.8 1.6E-18 5.5E-23 194.8 32.2 301 69-421 47-410 (430)
122 1k32_A Tricorn protease; prote 99.8 2.6E-18 8.9E-23 214.9 37.3 461 22-529 55-636 (1045)
123 4gq1_A NUP37; propeller, trans 99.8 2.7E-19 9.2E-24 198.7 23.0 258 23-338 93-389 (393)
124 1k32_A Tricorn protease; prote 99.8 3.9E-18 1.3E-22 213.3 35.7 218 223-481 249-501 (1045)
125 3bws_A Protein LP49; two-domai 99.8 3.3E-18 1.1E-22 191.7 30.9 218 226-481 177-431 (433)
126 1nir_A Nitrite reductase; hemo 99.8 2.1E-18 7.2E-23 199.3 29.2 338 22-486 140-518 (543)
127 3bws_A Protein LP49; two-domai 99.8 4.8E-18 1.6E-22 190.5 29.3 273 24-382 127-432 (433)
128 2w18_A PALB2, fancn, partner a 99.8 5.2E-18 1.8E-22 179.3 26.4 148 222-379 182-354 (356)
129 1l0q_A Surface layer protein; 99.8 2.7E-17 9.3E-22 181.6 31.4 254 231-529 3-274 (391)
130 2ecf_A Dipeptidyl peptidase IV 99.8 1.4E-16 5E-21 191.7 32.6 340 68-487 37-464 (741)
131 2hqs_A Protein TOLB; TOLB, PAL 99.7 7.5E-17 2.6E-21 180.2 23.7 203 224-465 184-410 (415)
132 1xfd_A DIP, dipeptidyl aminope 99.7 5.1E-17 1.7E-21 195.0 20.7 170 279-473 229-430 (723)
133 1nir_A Nitrite reductase; hemo 99.7 1.7E-15 5.7E-20 175.0 26.1 285 224-529 184-513 (543)
134 2hqs_A Protein TOLB; TOLB, PAL 99.7 1.7E-15 5.9E-20 169.2 24.2 223 240-505 159-406 (415)
135 2z3z_A Dipeptidyl aminopeptida 99.7 1.1E-14 3.8E-19 174.2 30.5 228 225-484 127-437 (706)
136 2ojh_A Uncharacterized protein 99.7 1.2E-14 4E-19 152.6 25.3 240 39-362 21-283 (297)
137 1ri6_A Putative isomerase YBHE 99.7 1E-13 3.6E-18 149.2 32.7 279 31-384 5-312 (343)
138 3u4y_A Uncharacterized protein 99.7 4.4E-14 1.5E-18 151.9 29.7 235 73-385 3-255 (331)
139 2ecf_A Dipeptidyl peptidase IV 99.7 1.7E-14 5.7E-19 173.7 29.0 263 224-528 114-457 (741)
140 3o4h_A Acylamino-acid-releasin 99.6 9.5E-15 3.3E-19 170.7 24.8 244 22-362 24-293 (582)
141 3o4h_A Acylamino-acid-releasin 99.6 1.8E-14 6E-19 168.4 26.2 186 225-481 116-312 (582)
142 2oit_A Nucleoporin 214KDA; NH2 99.6 4.5E-15 1.6E-19 166.6 20.0 208 261-529 41-277 (434)
143 3hfq_A Uncharacterized protein 99.6 6.7E-14 2.3E-18 151.8 28.3 242 224-486 45-323 (347)
144 1ri6_A Putative isomerase YBHE 99.6 3.9E-14 1.3E-18 152.5 25.7 233 224-487 43-315 (343)
145 2z3z_A Dipeptidyl aminopeptida 99.6 5.2E-14 1.8E-18 168.3 28.6 314 22-384 84-437 (706)
146 2ojh_A Uncharacterized protein 99.6 4.3E-14 1.5E-18 148.2 23.4 227 22-329 44-293 (297)
147 3hfq_A Uncharacterized protein 99.6 4.1E-13 1.4E-17 145.6 31.8 285 39-386 15-323 (347)
148 1z68_A Fibroblast activation p 99.6 1.3E-14 4.5E-19 174.0 21.0 327 71-484 19-445 (719)
149 3u4y_A Uncharacterized protein 99.6 2.8E-13 9.6E-18 145.5 29.4 270 26-384 4-306 (331)
150 3vgz_A Uncharacterized protein 99.6 1.5E-13 5.2E-18 148.8 27.3 260 24-362 45-325 (353)
151 1xfd_A DIP, dipeptidyl aminope 99.6 2.6E-14 8.7E-19 171.4 21.0 236 224-482 66-393 (723)
152 3scy_A Hypothetical bacterial 99.6 2.3E-12 8E-17 140.5 34.0 282 39-388 26-345 (361)
153 1pby_B Quinohemoprotein amine 99.6 2.1E-13 7.2E-18 146.4 24.5 220 224-484 39-312 (337)
154 4a5s_A Dipeptidyl peptidase 4 99.6 4.9E-13 1.7E-17 160.8 29.2 79 306-389 258-360 (740)
155 3vgz_A Uncharacterized protein 99.6 7.5E-13 2.6E-17 143.3 27.6 217 224-474 94-335 (353)
156 3scy_A Hypothetical bacterial 99.5 3E-12 1E-16 139.6 29.5 260 24-343 54-344 (361)
157 2oit_A Nucleoporin 214KDA; NH2 99.5 4.6E-13 1.6E-17 150.2 22.4 134 256-401 91-248 (434)
158 1jmx_B Amine dehydrogenase; ox 99.5 4E-13 1.4E-17 145.1 19.2 156 226-390 7-183 (349)
159 1pby_B Quinohemoprotein amine 99.5 2.4E-12 8.3E-17 138.0 24.6 270 231-529 2-309 (337)
160 1jmx_B Amine dehydrogenase; ox 99.5 1.3E-12 4.4E-17 141.1 22.3 279 25-347 5-334 (349)
161 1jof_A Carboxy-CIS,CIS-muconat 99.5 5.6E-12 1.9E-16 138.0 24.6 237 223-484 44-343 (365)
162 2oiz_A Aromatic amine dehydrog 99.4 2E-11 7E-16 133.3 26.2 273 23-362 53-359 (361)
163 1jof_A Carboxy-CIS,CIS-muconat 99.4 8.6E-12 3E-16 136.4 22.3 247 24-340 44-343 (365)
164 1z68_A Fibroblast activation p 99.4 8.6E-13 2.9E-17 158.1 14.6 232 224-482 65-391 (719)
165 4a5s_A Dipeptidyl peptidase 4 99.4 6.4E-12 2.2E-16 151.1 20.7 255 261-529 21-352 (740)
166 3azo_A Aminopeptidase; POP fam 99.3 6.1E-10 2.1E-14 131.9 31.8 111 224-342 135-278 (662)
167 3pe7_A Oligogalacturonate lyas 99.3 1.3E-10 4.5E-15 127.5 22.4 147 225-386 87-277 (388)
168 3pe7_A Oligogalacturonate lyas 99.3 5.1E-10 1.7E-14 122.8 26.0 277 262-573 41-383 (388)
169 3c5m_A Oligogalacturonate lyas 99.2 1.6E-10 5.6E-15 126.9 18.4 68 25-100 41-113 (396)
170 1q7f_A NHL, brain tumor CG1071 99.2 2.5E-09 8.7E-14 112.1 25.3 235 24-338 34-280 (286)
171 3fvz_A Peptidyl-glycine alpha- 99.2 7.2E-10 2.5E-14 119.2 21.5 267 5-339 14-323 (329)
172 2oiz_A Aromatic amine dehydrog 99.2 1.3E-08 4.4E-13 111.0 30.8 281 39-390 30-344 (361)
173 3fvz_A Peptidyl-glycine alpha- 99.2 2.1E-09 7E-14 115.6 23.5 234 224-482 29-322 (329)
174 3azo_A Aminopeptidase; POP fam 99.2 2.9E-09 1E-13 126.0 26.9 128 227-362 87-253 (662)
175 2bkl_A Prolyl endopeptidase; m 99.1 1.5E-09 5E-14 129.5 22.1 232 224-488 126-403 (695)
176 1q7f_A NHL, brain tumor CG1071 99.1 7.1E-09 2.4E-13 108.6 24.9 221 225-482 36-280 (286)
177 2gop_A Trilobed protease; beta 99.1 9.6E-09 3.3E-13 110.7 26.5 200 260-506 62-311 (347)
178 2xdw_A Prolyl endopeptidase; a 99.1 8.7E-09 3E-13 123.1 27.7 129 224-362 238-391 (710)
179 3c5m_A Oligogalacturonate lyas 99.1 1.1E-08 3.9E-13 112.0 25.1 192 262-488 41-279 (396)
180 3sjl_D Methylamine dehydrogena 99.1 1.8E-08 6.2E-13 109.2 23.8 258 24-348 82-373 (386)
181 2mad_H Methylamine dehydrogena 99.0 1.1E-07 3.7E-12 104.0 29.5 256 23-345 69-357 (373)
182 2xdw_A Prolyl endopeptidase; a 99.0 7.1E-09 2.4E-13 123.9 21.2 234 224-488 130-422 (710)
183 1qks_A Cytochrome CD1 nitrite 99.0 5.5E-07 1.9E-11 103.6 35.7 240 27-338 163-421 (567)
184 2dg1_A DRP35, lactonase; beta 99.0 2.5E-08 8.4E-13 106.9 23.0 231 227-483 14-264 (333)
185 3e5z_A Putative gluconolactona 99.0 2.2E-08 7.6E-13 105.5 21.8 228 223-485 32-289 (296)
186 2gop_A Trilobed protease; beta 99.0 2.9E-08 1E-12 106.9 23.0 215 224-487 64-335 (347)
187 2dg1_A DRP35, lactonase; beta 99.0 1.5E-08 5.2E-13 108.6 19.7 244 23-346 9-270 (333)
188 1yr2_A Prolyl oligopeptidase; 99.0 1.3E-08 4.4E-13 122.2 20.2 233 224-489 168-448 (741)
189 1yr2_A Prolyl oligopeptidase; 98.9 7.9E-08 2.7E-12 115.3 26.0 150 224-385 273-444 (741)
190 2bkl_A Prolyl endopeptidase; m 98.9 6.5E-08 2.2E-12 115.2 24.5 148 224-385 232-400 (695)
191 1rwi_B Serine/threonine-protei 98.9 5.3E-08 1.8E-12 100.7 19.5 224 225-482 30-264 (270)
192 1rwi_B Serine/threonine-protei 98.8 2.7E-07 9.2E-12 95.3 21.5 127 226-362 115-245 (270)
193 2z2n_A Virginiamycin B lyase; 98.8 4.4E-06 1.5E-10 87.2 30.0 192 259-484 101-297 (299)
194 3no2_A Uncharacterized protein 98.8 4.6E-07 1.6E-11 94.5 22.1 213 228-471 3-231 (276)
195 3c75_H MADH, methylamine dehyd 98.8 5.3E-07 1.8E-11 99.4 23.3 254 23-345 121-409 (426)
196 3no2_A Uncharacterized protein 98.8 2.7E-07 9.2E-12 96.3 19.3 181 266-484 3-197 (276)
197 3e5z_A Putative gluconolactona 98.8 7.2E-07 2.5E-11 93.8 22.7 188 261-483 32-247 (296)
198 2z2n_A Virginiamycin B lyase; 98.7 8.8E-06 3E-10 84.9 29.4 228 226-488 22-260 (299)
199 1xip_A Nucleoporin NUP159; bet 98.7 2.7E-07 9.2E-12 100.3 18.0 172 260-515 40-232 (388)
200 3dsm_A Uncharacterized protein 98.7 5E-07 1.7E-11 96.9 20.1 237 25-346 49-309 (328)
201 1xip_A Nucleoporin NUP159; bet 98.7 4E-07 1.4E-11 98.9 18.8 88 255-362 86-174 (388)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 98.7 5.8E-06 2E-10 87.2 27.5 102 228-338 185-299 (314)
203 2qc5_A Streptogramin B lactona 98.7 6.6E-06 2.3E-10 85.9 27.2 230 23-338 23-260 (300)
204 2mad_H Methylamine dehydrogena 98.7 3.3E-05 1.1E-09 84.1 32.6 293 26-388 27-356 (373)
205 3dsm_A Uncharacterized protein 98.6 4.1E-06 1.4E-10 89.7 24.8 224 228-484 52-303 (328)
206 1qks_A Cytochrome CD1 nitrite 98.6 2E-06 6.7E-11 99.0 22.3 191 264-485 163-376 (567)
207 3sjl_D Methylamine dehydrogena 98.6 9.7E-06 3.3E-10 87.7 25.9 291 25-390 38-371 (386)
208 3c75_H MADH, methylamine dehyd 98.5 1.4E-05 4.8E-10 88.0 24.3 278 40-389 99-409 (426)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 98.5 7.2E-06 2.4E-10 86.5 21.1 227 226-483 25-300 (314)
210 3g4e_A Regucalcin; six bladed 98.5 8.6E-06 3E-10 85.7 21.0 95 262-362 154-253 (297)
211 1mda_H Methylamine dehydrogena 98.5 3.3E-06 1.1E-10 91.4 17.4 77 262-348 269-356 (368)
212 2qc5_A Streptogramin B lactona 98.4 4.2E-05 1.4E-09 79.7 25.2 227 226-486 27-263 (300)
213 3iuj_A Prolyl endopeptidase; h 98.4 1.3E-05 4.6E-10 95.0 23.1 127 224-362 239-382 (693)
214 3hrp_A Uncharacterized protein 98.4 5.2E-05 1.8E-09 83.7 26.2 245 24-336 135-408 (409)
215 2qe8_A Uncharacterized protein 98.4 8.7E-06 3E-10 87.7 19.1 116 227-362 175-302 (343)
216 3iuj_A Prolyl endopeptidase; h 98.4 5.9E-06 2E-10 98.1 18.2 236 224-488 134-411 (693)
217 2ghs_A AGR_C_1268P; regucalcin 98.3 4.5E-05 1.5E-09 81.4 20.9 94 261-362 183-283 (326)
218 3hrp_A Uncharacterized protein 98.3 4.7E-05 1.6E-09 84.1 21.0 150 224-383 136-299 (409)
219 3g4e_A Regucalcin; six bladed 98.2 8.1E-05 2.8E-09 78.1 21.8 215 229-473 24-262 (297)
220 2ghs_A AGR_C_1268P; regucalcin 98.2 0.00021 7.3E-09 76.0 23.2 216 226-474 56-293 (326)
221 3dr2_A Exported gluconolactona 98.2 0.00042 1.4E-08 72.9 25.1 67 262-339 50-117 (305)
222 2qe8_A Uncharacterized protein 98.0 0.00021 7.2E-09 76.7 20.4 121 224-347 22-163 (343)
223 3dr2_A Exported gluconolactona 97.9 0.00038 1.3E-08 73.2 19.6 130 224-362 50-199 (305)
224 2hz6_A Endoplasmic reticulum t 97.8 7.4E-06 2.5E-10 89.3 4.1 178 267-484 8-194 (369)
225 1yiq_A Quinohemoprotein alcoho 97.8 0.00042 1.4E-08 81.8 19.2 80 262-344 240-344 (689)
226 4a2l_A BT_4663, two-component 97.8 0.13 4.5E-06 61.5 44.0 383 25-489 220-621 (795)
227 4a2l_A BT_4663, two-component 97.8 0.14 4.7E-06 61.4 46.2 208 259-489 358-578 (795)
228 2ece_A 462AA long hypothetical 97.7 0.0063 2.1E-07 66.4 25.1 64 262-326 326-399 (462)
229 1mda_H Methylamine dehydrogena 97.6 0.00078 2.7E-08 72.7 16.2 75 261-338 69-158 (368)
230 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.0049 1.7E-07 66.6 22.8 109 268-386 188-300 (376)
231 2ece_A 462AA long hypothetical 97.6 0.048 1.7E-06 59.5 29.2 198 263-481 88-351 (462)
232 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.021 7.3E-07 61.4 26.9 70 267-347 102-171 (376)
233 1kb0_A Quinohemoprotein alcoho 97.6 0.0081 2.8E-07 70.6 24.9 83 262-347 248-355 (677)
234 3hxj_A Pyrrolo-quinoline quino 97.5 0.0022 7.4E-08 67.6 16.7 177 262-479 142-320 (330)
235 1fwx_A Nitrous oxide reductase 97.4 0.0018 6.2E-08 73.1 16.2 234 227-486 98-435 (595)
236 1fwx_A Nitrous oxide reductase 97.4 0.0041 1.4E-07 70.3 18.6 104 224-327 282-407 (595)
237 1kb0_A Quinohemoprotein alcoho 97.4 0.013 4.6E-07 68.7 24.1 124 259-389 315-514 (677)
238 3ei3_A DNA damage-binding prot 97.4 0.15 5.2E-06 63.2 34.4 117 22-162 514-637 (1158)
239 3v9f_A Two-component system se 97.4 0.36 1.2E-05 57.5 36.8 201 258-489 407-618 (781)
240 1k3i_A Galactose oxidase precu 97.3 0.023 7.9E-07 66.5 24.8 112 221-340 188-325 (656)
241 2hz6_A Endoplasmic reticulum t 97.3 0.00023 8E-09 77.3 6.7 62 30-100 9-70 (369)
242 1yiq_A Quinohemoprotein alcoho 97.1 0.033 1.1E-06 65.5 23.3 61 277-347 454-514 (689)
243 1npe_A Nidogen, entactin; glyc 97.1 0.28 9.6E-06 49.6 28.6 93 259-362 169-262 (267)
244 2xbg_A YCF48-like protein; pho 97.0 0.32 1.1E-05 51.2 27.0 119 258-390 163-286 (327)
245 2xe4_A Oligopeptidase B; hydro 97.0 0.045 1.5E-06 65.1 22.4 108 224-339 179-305 (751)
246 2iwa_A Glutamine cyclotransfer 97.0 0.033 1.1E-06 56.7 18.2 114 260-389 23-142 (266)
247 3nol_A Glutamine cyclotransfer 96.9 0.053 1.8E-06 54.7 19.2 182 262-473 48-245 (262)
248 2ism_A Putative oxidoreductase 96.9 0.26 9E-06 52.5 25.7 69 25-97 36-113 (352)
249 3hxj_A Pyrrolo-quinoline quino 96.9 0.01 3.4E-07 62.4 14.2 96 268-380 107-202 (330)
250 2fp8_A Strictosidine synthase; 96.8 0.064 2.2E-06 56.3 20.1 75 261-345 189-275 (322)
251 3v9f_A Two-component system se 96.8 1.4 4.7E-05 52.5 45.2 76 258-341 363-439 (781)
252 3a9g_A Putative uncharacterize 96.8 0.71 2.4E-05 49.1 29.6 59 25-87 34-95 (354)
253 1kv9_A Type II quinohemoprotei 96.7 0.25 8.6E-06 57.7 25.5 83 262-347 235-342 (668)
254 2xe4_A Oligopeptidase B; hydro 96.6 0.06 2.1E-06 64.0 19.9 92 259-362 175-282 (751)
255 2fp8_A Strictosidine synthase; 96.4 0.29 9.9E-06 51.2 21.6 98 260-362 22-138 (322)
256 3nok_A Glutaminyl cyclase; bet 96.3 0.22 7.4E-06 50.3 18.2 183 262-473 60-255 (268)
257 3mbr_X Glutamine cyclotransfer 96.2 0.28 9.6E-06 48.9 18.7 187 259-473 22-224 (243)
258 2iwa_A Glutamine cyclotransfer 96.2 0.24 8.2E-06 50.3 18.6 111 224-346 26-143 (266)
259 1npe_A Nidogen, entactin; glyc 96.2 0.41 1.4E-05 48.4 20.7 95 258-362 80-178 (267)
260 3mbr_X Glutamine cyclotransfer 96.0 0.14 4.6E-06 51.2 15.3 145 229-390 74-223 (243)
261 1k3i_A Galactose oxidase precu 96.0 0.097 3.3E-06 61.2 16.6 72 261-340 190-276 (656)
262 3nol_A Glutamine cyclotransfer 95.9 0.095 3.3E-06 52.9 13.4 109 230-347 97-210 (262)
263 1kv9_A Type II quinohemoprotei 95.7 2.5 8.5E-05 49.2 27.2 73 267-346 116-195 (668)
264 3nok_A Glutaminyl cyclase; bet 95.5 0.11 3.6E-06 52.6 12.0 110 229-347 105-219 (268)
265 2ad6_A Methanol dehydrogenase 95.4 3 0.0001 47.5 25.9 37 259-296 304-343 (571)
266 2p4o_A Hypothetical protein; p 95.1 1.7 6E-05 44.7 20.8 70 261-341 36-107 (306)
267 1w6s_A Methanol dehydrogenase 95.1 3.4 0.00011 47.3 24.7 30 266-296 318-350 (599)
268 2p4o_A Hypothetical protein; p 95.1 3.1 0.00011 42.8 22.7 108 224-339 37-148 (306)
269 3pbp_A Nucleoporin NUP82; beta 95.1 0.18 6.3E-06 54.2 12.9 121 25-157 71-208 (452)
270 3v64_C Agrin; beta propeller, 94.9 4.2 0.00014 42.9 23.4 94 259-362 118-214 (349)
271 2xbg_A YCF48-like protein; pho 94.4 5.5 0.00019 41.4 28.4 135 210-362 81-216 (327)
272 3ei3_A DNA damage-binding prot 94.4 14 0.00046 45.8 49.6 105 222-343 485-596 (1158)
273 3qqz_A Putative uncharacterize 94.3 5 0.00017 40.2 28.4 80 257-337 70-150 (255)
274 1w6s_A Methanol dehydrogenase 94.2 10 0.00034 43.3 27.1 80 262-347 111-200 (599)
275 3qqz_A Putative uncharacterize 93.9 6 0.0002 39.7 22.8 216 23-284 30-250 (255)
276 3das_A Putative oxidoreductase 93.8 7.6 0.00026 40.8 25.5 59 25-85 37-100 (347)
277 2ad6_A Methanol dehydrogenase 93.8 3.6 0.00012 46.8 21.1 61 277-347 443-503 (571)
278 1flg_A Protein (quinoprotein e 93.7 12 0.0004 42.6 27.5 83 262-347 251-364 (582)
279 3tc9_A Hypothetical hydrolase; 93.3 11 0.00037 41.0 25.3 93 259-362 181-281 (430)
280 2g8s_A Glucose/sorbosone dehyd 92.9 11 0.00037 39.7 26.9 62 259-326 272-341 (353)
281 3pbp_A Nucleoporin NUP82; beta 92.6 2.3 7.9E-05 45.7 15.6 177 266-486 30-217 (452)
282 3sre_A PON1, serum paraoxonase 92.5 12 0.00042 39.4 22.3 67 262-337 226-297 (355)
283 3v65_B Low-density lipoprotein 91.7 16 0.00053 39.0 25.0 92 261-362 163-257 (386)
284 1cru_A Protein (soluble quinop 91.6 18 0.00062 39.6 27.5 61 25-87 32-99 (454)
285 3kya_A Putative phosphatase; s 90.8 23 0.00078 39.1 23.8 76 266-344 389-481 (496)
286 2vpj_A Kelch-like protein 12; 90.2 17 0.00058 36.8 19.8 66 463-529 206-277 (301)
287 3v65_B Low-density lipoprotein 90.2 21 0.00073 37.9 25.5 78 259-346 248-326 (386)
288 1ijq_A LDL receptor, low-densi 89.8 20 0.00067 36.9 26.2 78 260-345 167-245 (316)
289 3tc9_A Hypothetical hydrolase; 89.8 4.5 0.00015 44.1 15.2 70 261-338 230-301 (430)
290 4hw6_A Hypothetical protein, I 89.3 27 0.00094 37.8 23.7 69 265-336 352-431 (433)
291 3ii7_A Kelch-like protein 7; p 89.2 21 0.0007 36.3 19.6 66 463-529 200-271 (306)
292 2p9w_A MAL S 1 allergenic prot 87.6 25 0.00085 36.5 17.9 78 261-342 17-116 (334)
293 2p9w_A MAL S 1 allergenic prot 87.4 29 0.001 35.9 18.7 76 210-287 138-215 (334)
294 2xn4_A Kelch-like protein 2; s 87.2 27 0.00092 35.3 18.7 64 463-528 204-274 (302)
295 3m0c_C LDL receptor, low-densi 86.1 60 0.0021 38.2 27.0 94 259-362 473-569 (791)
296 1zgk_A Kelch-like ECH-associat 84.5 37 0.0013 34.4 18.9 65 463-529 215-286 (308)
297 1tl2_A L10, protein (tachylect 83.5 10 0.00034 37.0 11.6 65 260-335 91-160 (236)
298 3p5b_L Low density lipoprotein 82.2 56 0.0019 34.8 29.0 94 259-362 161-257 (400)
299 1flg_A Protein (quinoprotein e 82.0 4.6 0.00016 46.0 10.3 61 277-347 465-525 (582)
300 4hw6_A Hypothetical protein, I 81.6 15 0.00051 39.9 13.9 73 258-341 183-262 (433)
301 3v64_C Agrin; beta propeller, 81.0 56 0.0019 34.0 29.2 78 259-346 205-283 (349)
302 1n7d_A LDL receptor, low-densi 80.1 6.1 0.00021 46.1 10.7 77 262-346 545-622 (699)
303 2vpj_A Kelch-like protein 12; 79.8 53 0.0018 32.9 18.7 26 463-488 253-284 (301)
304 2xzh_A Clathrin heavy chain 1; 79.8 61 0.0021 33.6 20.9 203 262-486 72-294 (365)
305 3p5b_L Low density lipoprotein 79.7 68 0.0023 34.1 22.7 98 257-362 112-213 (400)
306 1suu_A DNA gyrase subunit A; t 79.6 59 0.002 33.4 22.1 219 77-338 6-231 (312)
307 3a9g_A Putative uncharacterize 79.5 20 0.00067 37.7 13.6 76 257-339 29-115 (354)
308 1tl2_A L10, protein (tachylect 77.9 12 0.00041 36.5 10.0 102 223-337 7-115 (236)
309 3sov_A LRP-6, low-density lipo 77.9 66 0.0023 33.0 24.9 94 259-362 81-177 (318)
310 2uvk_A YJHT; unknown function, 75.5 76 0.0026 32.7 16.9 53 475-528 286-340 (357)
311 1bpo_A Protein (clathrin); cla 75.0 97 0.0033 33.5 22.9 40 257-297 259-298 (494)
312 3m0c_C LDL receptor, low-densi 74.4 1.4E+02 0.0048 35.0 23.6 97 257-362 424-525 (791)
313 2ao6_B NCOA-2, 14-MER fragment 73.7 2 6.9E-05 24.9 1.9 19 762-780 3-21 (26)
314 1cru_A Protein (soluble quinop 72.7 45 0.0016 36.3 14.6 60 257-318 27-87 (454)
315 2xn4_A Kelch-like protein 2; s 72.4 83 0.0028 31.5 18.5 27 463-489 251-283 (302)
316 3ii7_A Kelch-like protein 7; p 71.8 86 0.0029 31.4 20.0 26 463-488 247-278 (306)
317 3sov_A LRP-6, low-density lipo 71.6 94 0.0032 31.8 24.3 77 260-346 169-246 (318)
318 1bpo_A Protein (clathrin); cla 68.7 1.3E+02 0.0046 32.4 19.6 202 262-486 71-293 (494)
319 3kya_A Putative phosphatase; s 68.6 84 0.0029 34.6 15.4 69 260-337 189-277 (496)
320 3das_A Putative oxidoreductase 67.9 67 0.0023 33.5 13.9 59 257-318 32-90 (347)
321 1zi0_A DNA gyrase subunit A; b 66.4 1.2E+02 0.004 30.9 21.6 114 222-337 111-225 (307)
322 4gq2_M Nucleoporin NUP120; bet 65.8 56 0.0019 39.4 14.5 38 308-345 236-273 (950)
323 2ism_A Putative oxidoreductase 65.4 1.3E+02 0.0045 31.1 27.5 64 258-326 76-153 (352)
324 1ijq_A LDL receptor, low-densi 64.1 1.3E+02 0.0044 30.5 25.7 94 259-362 79-175 (316)
325 3s25_A Hypothetical 7-bladed b 63.9 56 0.0019 33.3 12.2 65 262-338 189-255 (302)
326 2g8s_A Glucose/sorbosone dehyd 63.4 1.3E+02 0.0046 31.1 15.5 25 367-391 190-217 (353)
327 1n7d_A LDL receptor, low-densi 62.6 22 0.00075 41.4 9.8 69 262-339 458-529 (699)
328 3qhy_B Beta-lactamase inhibito 59.1 1.5E+02 0.0051 29.6 19.3 220 22-336 24-244 (282)
329 3amr_A 3-phytase; beta-propell 58.5 1.8E+02 0.0061 30.3 22.7 82 259-346 181-272 (355)
330 1wp5_A Topoisomerase IV; broke 57.4 1.7E+02 0.006 29.9 19.7 65 77-160 3-68 (323)
331 4fhn_B Nucleoporin NUP120; pro 53.0 34 0.0012 42.3 9.7 38 308-345 238-275 (1139)
332 3l6v_A GYRA, DNA gyrase subuni 52.1 2.3E+02 0.0078 29.7 20.0 70 76-159 4-74 (370)
333 3sbq_A Nitrous-oxide reductase 50.8 13 0.00044 41.4 4.6 104 224-327 328-454 (638)
334 1zgk_A Kelch-like ECH-associat 49.2 2.1E+02 0.0073 28.5 15.4 27 463-489 262-294 (308)
335 1suu_A DNA gyrase subunit A; t 47.9 2.4E+02 0.0081 28.7 22.8 116 142-287 114-231 (312)
336 4gq2_M Nucleoporin NUP120; bet 47.9 2.3E+02 0.0078 34.0 15.6 38 259-297 238-275 (950)
337 2be1_A Serine/threonine-protei 45.7 1.5E+02 0.0051 30.7 11.8 66 269-342 11-80 (339)
338 4fhn_B Nucleoporin NUP120; pro 45.2 1.2E+02 0.0041 37.3 12.9 38 259-297 240-277 (1139)
339 3dct_B Nuclear receptor coacti 44.1 9.8 0.00034 21.1 1.2 11 762-772 6-16 (21)
340 3uc1_A DNA gyrase subunit A; D 40.1 3.2E+02 0.011 27.9 22.5 116 142-287 109-228 (327)
341 3s25_A Hypothetical 7-bladed b 38.1 3.3E+02 0.011 27.4 15.0 67 262-340 109-178 (302)
342 3kci_A Probable E3 ubiquitin-p 38.1 3.7E+02 0.013 28.0 18.5 76 210-287 160-241 (389)
343 3s94_A LRP-6, low-density lipo 37.4 4.9E+02 0.017 29.3 23.6 94 259-362 86-182 (619)
344 1xi4_A Clathrin heavy chain; a 37.3 3.6E+02 0.012 33.9 14.6 64 262-338 71-134 (1630)
345 4asc_A Kelch repeat and BTB do 35.7 3.4E+02 0.012 26.9 22.0 229 270-529 7-276 (315)
346 2wg3_C Hedgehog-interacting pr 34.5 4.7E+02 0.016 28.2 26.7 58 25-85 19-89 (463)
347 2wg3_C Hedgehog-interacting pr 34.4 3.3E+02 0.011 29.4 13.0 61 257-318 14-79 (463)
348 3l6v_A GYRA, DNA gyrase subuni 33.8 4.3E+02 0.015 27.5 23.8 19 142-160 113-131 (370)
349 3sre_A PON1, serum paraoxonase 32.4 4.4E+02 0.015 27.3 20.4 86 276-362 81-176 (355)
350 3zwu_A Alkaline phosphatase PH 31.9 56 0.0019 36.9 6.2 56 25-85 481-548 (592)
351 1m2z_B Nuclear receptor coacti 31.2 10 0.00034 22.4 -0.0 17 761-777 8-24 (26)
352 3s94_A LRP-6, low-density lipo 31.0 6.1E+02 0.021 28.4 36.7 78 259-346 173-251 (619)
353 3amr_A 3-phytase; beta-propell 30.5 4.7E+02 0.016 27.1 23.7 68 260-336 133-208 (355)
354 4d9s_A UVB-resistance protein 29.4 5.1E+02 0.017 27.1 26.2 267 22-336 68-355 (406)
355 2be1_A Serine/threonine-protei 29.3 61 0.0021 33.7 5.6 116 222-347 12-139 (339)
356 3no0_A DNA gyrase subunit A; D 28.4 4.4E+02 0.015 26.0 19.7 65 78-159 79-144 (276)
357 2woz_A Kelch repeat and BTB do 28.1 4.5E+02 0.015 26.0 17.3 27 462-488 252-293 (318)
358 3zwu_A Alkaline phosphatase PH 28.1 1.5E+02 0.005 33.5 8.8 56 262-325 481-548 (592)
359 2xzh_A Clathrin heavy chain 1; 27.8 5.2E+02 0.018 26.7 25.3 40 257-297 260-299 (365)
360 4a0p_A LRP6, LRP-6, low-densit 27.6 6.9E+02 0.024 28.0 26.5 238 142-435 5-251 (628)
361 2crn_A Ubash3A protein; compac 27.5 75 0.0026 24.0 4.3 51 763-815 11-61 (64)
362 3kci_A Probable E3 ubiquitin-p 26.9 5.5E+02 0.019 26.6 24.7 272 23-337 54-344 (389)
363 2dai_A Ubadc1, ubiquitin assoc 26.1 1.2E+02 0.0042 24.1 5.6 52 762-814 30-81 (83)
364 1zi0_A DNA gyrase subunit A; b 25.9 5.2E+02 0.018 26.0 24.0 77 209-287 146-226 (307)
365 1zso_A Hypothetical protein; s 25.7 1.3E+02 0.0044 27.5 6.4 49 455-504 112-161 (164)
366 4a9v_A PHOX; hydrolase, beta-p 23.1 1.1E+02 0.0039 34.1 6.5 57 25-85 481-548 (592)
367 3sbq_A Nitrous-oxide reductase 23.0 2E+02 0.0069 32.1 8.3 71 262-338 328-408 (638)
368 3no0_A DNA gyrase subunit A; D 22.3 5.7E+02 0.019 25.2 18.3 115 142-287 80-196 (276)
369 3f7f_A Nucleoporin NUP120; nuc 20.7 1.2E+02 0.0041 34.9 6.2 36 309-346 223-258 (729)
370 1vek_A UBP14, ubiquitin-specif 20.6 1.9E+02 0.0065 23.1 5.7 52 762-815 30-81 (84)
371 2dak_A Ubiquitin carboxyl-term 20.3 2E+02 0.007 21.3 5.5 53 761-816 9-61 (63)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.4e-38 Score=369.97 Aligned_cols=460 Identities=10% Similarity=0.058 Sum_probs=314.5
Q ss_pred CceEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 21 ~~~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
....++|||||+++|++.+++++||+.. ....+..+. .+.+.+.+++|||||++||+++.||+|+|||+....
T Consensus 20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~-~~~~~~~~~------~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~ 92 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGTSVYTVPVG-SLTDTEIYT------EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 92 (611)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETT-CSSCCEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred ceeEEeeCCCCCEEEeCCCCEEEEecCC-CcccCeEec------CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc
Confidence 3455889999999999988899999994 433333332 234678899999999999999999999999985332
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEE--EeecCCCeEEEEecCC--cEEEEecCCccCcceeecccCCCC
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDG--SLYSISWKGEFYGAFELVHSSNDS 176 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~d~~~llv~t~dg--~i~~~~w~~~~~~~~~l~~~p~~~ 176 (827)
... .. .+.++...|. +++++++.+++++.+. ...++.|+.... .
T Consensus 93 ~~~-----------~~----------~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~--~--------- 140 (611)
T 1nr0_A 93 HIL-----------KT----------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS--N--------- 140 (611)
T ss_dssp CCE-----------EE----------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB--C---------
T ss_pred cee-----------eE----------eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC--c---------
Confidence 110 00 0122333444 4567778888777543 345556873211 0
Q ss_pred cccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCc-EEEEeeccCccccceeeccce---
Q 003356 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK--- 252 (827)
Q Consensus 177 ~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~~~~~~~~~~~~~~~--- 252 (827)
..+..+...|.+++ |+|+|+ .+++++.|+++++|+....+.
T Consensus 141 -------------------------~~l~gh~~~v~~v~----------f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~ 185 (611)
T 1nr0_A 141 -------------------------GNLTGQARAMNSVD----------FKPSRPFRIISGSDDNTVAIFEGPPFKFKST 185 (611)
T ss_dssp -------------------------BCCCCCSSCEEEEE----------ECSSSSCEEEEEETTSCEEEEETTTBEEEEE
T ss_pred -------------------------ceecCCCCCceEEE----------ECCCCCeEEEEEeCCCeEEEEECCCCeEeee
Confidence 11234455677766 667776 588889999999999765433
Q ss_pred ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 253 ~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
+.+|.+.+. ++|+|++++||+|+.||+|++||+.+ ++.+..+.... ....+|.+.|.+++|+|||++||+|+.|++|
T Consensus 186 l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~~-~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v 263 (611)
T 1nr0_A 186 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDS-LKNVAHSGSVFGLTWSPDGTKIASASADKTI 263 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTT-SSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeecccc-ccccccCCCEEEEEECCCCCEEEEEeCCCeE
Confidence 378999887 99999999999999999999999987 66666553100 0112499999999999999999999999999
Q ss_pred EEEeccCCeeEEEe-------------------------------------------ccccccceeeeeecCCCCCCccc
Q 003356 332 TVWSVSGCRLMSTI-------------------------------------------RQISLSSISSPIVKPNQDCKYEP 368 (827)
Q Consensus 332 ~vWs~~~~~l~~tl-------------------------------------------~~~~~~~v~s~~~sp~~~~~~~~ 368 (827)
++||+.++++..++ .+| ...|.+++|+|++ ..
T Consensus 264 ~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh-~~~v~~l~~spdg----~~ 338 (611)
T 1nr0_A 264 KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH-NKAITALSSSADG----KT 338 (611)
T ss_dssp EEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC-SSCEEEEEECTTS----SE
T ss_pred EEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC-CCCEEEEEEeCCC----CE
Confidence 99999877665443 344 5679999999999 88
Q ss_pred eeecc---eeEEEccCCceEEEEe-cCCcceEEEEec--ceeeeecccCCCeeeeEEEEc--------------------
Q 003356 369 LMSGT---SMMQWDEYGYRLYAIE-EGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYG-------------------- 422 (827)
Q Consensus 369 l~sg~---~i~~W~~~~~~l~~~~-~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~-------------------- 422 (827)
+++++ ++++|+..++++.... .+|...+..+.+ ...+++++.|+++++|++..+
T Consensus 339 l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 339 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence 88886 8999999988876654 457777755554 556778888888887763211
Q ss_pred ----------------------------------------CCeEEEEecCCCCcceEEEe----eeceeeccCCCcEEEE
Q 003356 423 ----------------------------------------EDRLLVVQSEDTDELKILHL----NLPVSYISQNWPVQHV 458 (827)
Q Consensus 423 ----------------------------------------~~~~~~~~~~d~~~~~w~~~----~~p~~~~~~~~~I~~v 458 (827)
+.+.++..+.|.....|..- ..... .+|..+|.++
T Consensus 419 ~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v 497 (611)
T 1nr0_A 419 VSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSV 497 (611)
T ss_dssp ECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEE
T ss_pred EeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEE
Confidence 11122222333334456432 11122 6799999999
Q ss_pred EEcCCCCEEEEEeCCceE-EEEcCC-CeEEeeCCccceEEEEEEEEEEeCC--EEEEEEEeeCCCcEEEEEeeCCCCCcc
Q 003356 459 AASKDGMFLAVAGLHGLI-LYDIRQ-KKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRYHLDQS 534 (827)
Q Consensus 459 a~SpdG~~lavag~dg~i-iwd~~t-~~w~~f~~~~~e~~~~v~gl~W~~~--~li~~~~~~~~~~~~lrly~~~~l~~~ 534 (827)
+|||||++||+++.|+.+ +|++.+ ++.... .....+...|..++|..+ .+++|+. +..+++|.......
T Consensus 498 ~fspdg~~las~s~d~~v~~w~~~~~~~~~~~-~~~~~H~~~V~~v~fspdg~~lasgs~-----D~~v~lW~~~~~~~- 570 (611)
T 1nr0_A 498 AFSNNGAFLVATDQSRKVIPYSVANNFELAHT-NSWTFHTAKVACVSWSPDNVRLATGSL-----DNSVIVWNMNKPSD- 570 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEEGGGTTEESCC-CCCCCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTCTTS-
T ss_pred EECCCCCEEEEEcCCCCEEEEEcCCCCceeee-eeeeecccceeEEEECCCCCEEEEEEC-----CCcEEEEECCCccc-
Confidence 999999999999999999 999987 442211 011112235788999754 6666632 35699998852111
Q ss_pred ceEEEE-ec-CCcc--EEEEccCCEEEEEEcCceEEEEEE
Q 003356 535 SLLCRK-SL-LAKP--IVMDVYEDYILVTYRPFDVHIFHV 570 (827)
Q Consensus 535 ~~~~~~-~l-~~~~--~~l~~~~~~llV~~~~~~i~l~~~ 570 (827)
...... .+ ...+ +.++..+. ++.+..|+.|++|++
T Consensus 571 ~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 571 HPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp CCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred ccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 111111 12 1222 23344444 666788999999986
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.2e-37 Score=357.82 Aligned_cols=482 Identities=15% Similarity=0.187 Sum_probs=330.7
Q ss_pred ceEEEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
...++|||||++||+++ +++|+|||.. +..+..+. .+.+.+.+++|||||++||+++.||+|++||+. +.
T Consensus 19 V~~~a~spdg~~las~~~d~~v~iWd~~--~~~~~~l~------gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~ 89 (577)
T 2ymu_A 19 VRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLT------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ 89 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEE------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SC
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEe------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CC
Confidence 45589999999999985 6789999973 34444432 134788999999999999999999999999953 22
Q ss_pred ceeecCCCCC---------CC-----------ceeee------------------EeeEeec------------------
Q 003356 101 KSIQIGGKQP---------SG-----------LFFIK------------------ISLVLNE------------------ 124 (827)
Q Consensus 101 ~~~~~~~~~~---------~~-----------~~~~~------------------~~l~~~~------------------ 124 (827)
......++.. .+ ..++. +......
T Consensus 90 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (577)
T 2ymu_A 90 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 169 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccc
Confidence 1111111110 00 00000 0000000
Q ss_pred ---ccccccccceEE--EeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCce
Q 003356 125 ---QLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAF 199 (827)
Q Consensus 125 ---~~~~~~~~~~v~--~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~ 199 (827)
......+...+. ++.+++..+++++.||.+++|+.+++.... ...+...+..+.|++++........+..
T Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~-----~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 244 (577)
T 2ymu_A 170 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-----LTGHSSSVRGVAFSPDGQTIASASDDKT 244 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEE-----EECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred eeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEE-----EecCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 000111222333 446777889999999999885533322111 1223345666777777654333333333
Q ss_pred eccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecc--ceecCCCCcEE-EEEcCCCCEEEEEec
Q 003356 200 VSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI--DKELGSGDAVC-ASIAPEQQILAVGTR 276 (827)
Q Consensus 200 ~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~-va~sp~~~lla~g~~ 276 (827)
...+. .....+..+.-+......+.++|||+.++++..++++++|+.... ..+.+|...+. ++|+|++++|++++.
T Consensus 245 i~~w~-~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~ 323 (577)
T 2ymu_A 245 VKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 323 (577)
T ss_dssp EEEEC-TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEe-CCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeC
Confidence 33332 222223333222233345678899999999999999999985432 22378888887 999999999999999
Q ss_pred CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeee
Q 003356 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 356 (827)
Q Consensus 277 dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~ 356 (827)
||+|++|+... ..+..+.+ |..+|.+++|+|||++||+|+.|+.+++|+.. ++++.++.+| ...|.++
T Consensus 324 d~~i~~w~~~~--~~~~~~~~--------~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~-~~~v~~~ 391 (577)
T 2ymu_A 324 DKTVKLWNRNG--QHLQTLTG--------HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH-SSSVRGV 391 (577)
T ss_dssp TSCEEEEETTS--CEEEEECC--------CSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEECC-SSCEEEE
T ss_pred CCeEEEEeCCC--CeeEEEeC--------CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecCC-CCCeEEE
Confidence 99999999764 45566666 99999999999999999999999999999965 5677788877 6789999
Q ss_pred eecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEe
Q 003356 357 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (827)
Q Consensus 357 ~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~ 430 (827)
+|+|++ ..++++. .+.+|+. +++++....+|...|..+.+ ++.+++++.|+++++|+. .+ .
T Consensus 392 ~~s~dg----~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~-~------ 458 (577)
T 2ymu_A 392 AFSPDG----QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NG-Q------ 458 (577)
T ss_dssp EECTTS----SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TS-C------
T ss_pred EECCCC----CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CC-C------
Confidence 999999 8888776 7899996 45777788889888865554 788999999999999983 11 1
Q ss_pred cCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeC--C
Q 003356 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--K 507 (827)
Q Consensus 431 ~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~--~ 507 (827)
....+.+|..+|++++|+|||++||+|+.|+.+ +||...+.-+.+.. +.-.|..++|.. .
T Consensus 459 -------------~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~----h~~~v~~l~~s~dg~ 521 (577)
T 2ymu_A 459 -------------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG----HSSSVRGVAFSPDGQ 521 (577)
T ss_dssp -------------EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEEC----CSSCEEEEEECTTSS
T ss_pred -------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeC----CCCCEEEEEEcCCCC
Confidence 134567899999999999999999999999999 99975544343321 112477888874 4
Q ss_pred EEEEEEEeeCCCcEEEEEeeCCCCCccceEEEE-ecCCccE--EEEccCCEEEEEEcCceEEEEE
Q 003356 508 IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK-SLLAKPI--VMDVYEDYILVTYRPFDVHIFH 569 (827)
Q Consensus 508 ~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~-~l~~~~~--~l~~~~~~llV~~~~~~i~l~~ 569 (827)
++++++ .+..+++|+.. . ..+.+. .+..++. .+++.+++++.+..|+.|++|+
T Consensus 522 ~l~s~~-----~dg~v~lwd~~---~-~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 522 TIASAS-----DDKTVKLWNRN---G-QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEE-----TTSEEEEECTT---S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEE-----CcCEEEEEeCC---C-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 666652 23579999864 2 222222 2334443 3456677888888899999995
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.2e-35 Score=346.91 Aligned_cols=397 Identities=12% Similarity=0.153 Sum_probs=275.9
Q ss_pred ceEEEEEecceEEEEEc-cCeEEEeecCCc-eeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecC----cEEEEEE
Q 003356 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQH-KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHIFK 95 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~-~~~v~IW~~~~~-~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~d----g~l~l~~ 95 (827)
...++|||||++||+++ +++|+|||.... ......+. .+.+.+.+++|+|||++||+++.+ +.|++|+
T Consensus 62 v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~------~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd 135 (611)
T 1nr0_A 62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP------VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 135 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE------CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred eEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec------ccCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence 45589999999999994 789999998421 12222221 134788999999999999998865 5788887
Q ss_pred EEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecCCC-eEEEEecCCcEEEEecCCccCcceeeccc
Q 003356 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNK-HMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (827)
Q Consensus 96 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~-~llv~t~dg~i~~~~w~~~~~~~~~l~~~ 172 (827)
.. ... ..+.++...|.++ .+++. .+++++.|+.+++|+. ......
T Consensus 136 ~~--~~~-----------------------~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~--~~~~~~----- 183 (611)
T 1nr0_A 136 TG--TSN-----------------------GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG--PPFKFK----- 183 (611)
T ss_dssp TC--CBC-----------------------BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET--TTBEEE-----
T ss_pred CC--CCc-----------------------ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEEC--CCCeEe-----
Confidence 32 110 0123344445444 55555 5889999999998543 221111
Q ss_pred CCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce
Q 003356 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK 252 (827)
Q Consensus 173 p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~ 252 (827)
..+..+...|.+++ ++|||+++++++.|+++++|+...++.
T Consensus 184 -----------------------------~~l~~H~~~V~~v~----------fspdg~~las~s~D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 184 -----------------------------STFGEHTKFVHSVR----------YNPDGSLFASTGGDGTIVLYNGVDGTK 224 (611)
T ss_dssp -----------------------------EEECCCSSCEEEEE----------ECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred -----------------------------eeeccccCceEEEE----------ECCCCCEEEEEECCCcEEEEECCCCcE
Confidence 11234455676655 788999999999999999999765543
Q ss_pred e----c------CCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec----------------------
Q 003356 253 E----L------GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD---------------------- 299 (827)
Q Consensus 253 ~----~------~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~---------------------- 299 (827)
. . +|.+.+. ++|+|++++||+|+.|++|++||+.+ ++.+.++....
T Consensus 225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 303 (611)
T 1nr0_A 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 303 (611)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence 2 1 7888888 99999999999999999999999987 55554443110
Q ss_pred -------------CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc-cc----------------
Q 003356 300 -------------WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-IS---------------- 349 (827)
Q Consensus 300 -------------~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~-~~---------------- 349 (827)
.....+|.+.|++++|+|||++|++|+.|++|++||+.++.+...+.. |.
T Consensus 304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s 383 (611)
T 1nr0_A 304 GFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 383 (611)
T ss_dssp CCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE
T ss_pred CcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEE
Confidence 001125999999999999999999999999999999977654433211 10
Q ss_pred ----------------------------------------------------------------ccceeeeeecCCCCCC
Q 003356 350 ----------------------------------------------------------------LSSISSPIVKPNQDCK 365 (827)
Q Consensus 350 ----------------------------------------------------------------~~~v~s~~~sp~~~~~ 365 (827)
...+.+++|+|++
T Consensus 384 ~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg--- 460 (611)
T 1nr0_A 384 VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK--- 460 (611)
T ss_dssp EETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTS---
T ss_pred EEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCC---
Confidence 1234567778877
Q ss_pred ccceeecc---eeEEEccCCceE--EEEecCCcceEEE--Eec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcc
Q 003356 366 YEPLMSGT---SMMQWDEYGYRL--YAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL 437 (827)
Q Consensus 366 ~~~l~sg~---~i~~W~~~~~~l--~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~ 437 (827)
..+++|+ ++++|+..+.++ ... .+|...|.. |++ ++.+++++.|+++++|++.....
T Consensus 461 -~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~------------- 525 (611)
T 1nr0_A 461 -QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE------------- 525 (611)
T ss_dssp -CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE-------------
T ss_pred -CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc-------------
Confidence 7788776 788999877654 233 567777844 444 88999999999999998643221
Q ss_pred eEEEeeece--eeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe-E--EeeCCccceEEEEEEEEEEeCC-EEE
Q 003356 438 KILHLNLPV--SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK-W--RVFGDITQEQKIQSKGLLWLGK-IIV 510 (827)
Q Consensus 438 ~w~~~~~p~--~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~-w--~~f~~~~~e~~~~v~gl~W~~~-~li 510 (827)
+.. .+.+|..+|.+++|||||++||+|+.|+.+ +||+.++. . +.+. .+. .-.|..+.|..+ .++
T Consensus 526 ------~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~--~h~-~~~v~~v~fs~d~~l~ 596 (611)
T 1nr0_A 526 ------LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG--AHA-MSSVNSVIWLNETTIV 596 (611)
T ss_dssp ------ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT--SST-TSCEEEEEEEETTEEE
T ss_pred ------eeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhc--cCc-ccCeeEEEEcCCCEEE
Confidence 112 233499999999999999999999999999 99998764 1 2221 110 124778888754 344
Q ss_pred EEEEeeCCCcEEEEEeeC
Q 003356 511 VCNYIDSSNTYELLFYPR 528 (827)
Q Consensus 511 ~~~~~~~~~~~~lrly~~ 528 (827)
+++ .+..+|+|..
T Consensus 597 s~~-----~D~~i~lW~~ 609 (611)
T 1nr0_A 597 SAG-----QDSNIKFWNV 609 (611)
T ss_dssp EEE-----TTSCEEEEEC
T ss_pred Eec-----CCCCEEEEec
Confidence 442 2356888865
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9e-35 Score=340.03 Aligned_cols=442 Identities=16% Similarity=0.185 Sum_probs=308.0
Q ss_pred eEEEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 003356 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (827)
Q Consensus 23 ~vv~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~ 101 (827)
..++|||||++||+++ +++|+|||.. +..+..+.. +.+.+.+++|+|||++|++++.|+.+++|+......
T Consensus 61 ~~l~fspdg~~las~~~d~~i~vWd~~--~~~~~~~~~------~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~ 132 (577)
T 2ymu_A 61 WGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTG------HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL 132 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEEC------CCCCEEEEEECCCCCEEEEEcCCCceeeccccccee
Confidence 4488999999999984 6789999974 334443321 347788999999999999999999999998532110
Q ss_pred eeec-----------C-----------------------------CCC---------CCC-----------ceeeeEeeE
Q 003356 102 SIQI-----------G-----------------------------GKQ---------PSG-----------LFFIKISLV 121 (827)
Q Consensus 102 ~~~~-----------~-----------------------------~~~---------~~~-----------~~~~~~~l~ 121 (827)
.... . .+. +.+ ..+|+.+
T Consensus 133 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-- 210 (577)
T 2ymu_A 133 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-- 210 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--
T ss_pred eeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC--
Confidence 0000 0 000 000 0111100
Q ss_pred eecccccccccceEEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCce
Q 003356 122 LNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAF 199 (827)
Q Consensus 122 ~~~~~~~~~~~~~v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~ 199 (827)
.+....+.++...|.++ ++++..+++++.||.+++|+.+++... ....+...+..+.|++++........+..
T Consensus 211 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~-----~~~~~~~~v~~v~~~~d~~~l~~~~~d~~ 285 (577)
T 2ymu_A 211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-----TLTGHSSSVNGVAFRPDGQTIASASDDKT 285 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-----EECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEE-----EEecCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence 00011123344555554 677788999999999998654332211 12233445666677777664333332223
Q ss_pred eccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccc--eecCCCCcEE-EEEcCCCCEEEEEec
Q 003356 200 VSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIAPEQQILAVGTR 276 (827)
Q Consensus 200 ~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~-va~sp~~~lla~g~~ 276 (827)
...+.. ....+..+.-+......++++|||+.+++++.++++++|+..... ...+|...+. ++|+|++++||+|+.
T Consensus 286 i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 364 (577)
T 2ymu_A 286 VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASD 364 (577)
T ss_dssp EEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeC
Confidence 323221 122222222222223456788999999999999999999865432 2367888777 999999999999999
Q ss_pred CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeee
Q 003356 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 356 (827)
Q Consensus 277 dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~ 356 (827)
||+|++|+.. ++.+..+.. |.++|++++|+|||++||+|+.|+.|++|+.. ++++.++.+| ...|.++
T Consensus 365 dg~v~~~~~~--~~~~~~~~~--------~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~-~~~v~~~ 432 (577)
T 2ymu_A 365 DKTVKLWNRN--GQLLQTLTG--------HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH-SSSVWGV 432 (577)
T ss_dssp TSEEEEEETT--CCEEEEEEC--------CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECC-SSCEEEE
T ss_pred CCEEEEEcCC--CCEEEEecC--------CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCC-CCCeEEE
Confidence 9999999964 567777777 99999999999999999999999999999965 5667788887 6789999
Q ss_pred eecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEE--ec-ceeeeecccCCCeeeeEEEEcCCeEEEEe
Q 003356 357 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (827)
Q Consensus 357 ~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~--~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~ 430 (827)
+|+|++ ..+++++ ++.+|+.. ++++..+.+|...|.++ ++ ++.+++++.|+++++|+. .+ .
T Consensus 433 ~~s~d~----~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~-~------ 499 (577)
T 2ymu_A 433 AFSPDD----QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG-Q------ 499 (577)
T ss_dssp EECTTS----SEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TS-C------
T ss_pred EECCCC----CEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC-C------
Confidence 999998 7888776 79999964 56677778888888554 44 889999999999999983 22 2
Q ss_pred cCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeC--C
Q 003356 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--K 507 (827)
Q Consensus 431 ~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~--~ 507 (827)
+...+.+|..+|++++|||||++||+|+.||.+ +||........+.. +.-.|.+++|.. +
T Consensus 500 -------------~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~----h~~~v~~~~fs~dg~ 562 (577)
T 2ymu_A 500 -------------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG----HSSSVWGVAFSPDGQ 562 (577)
T ss_dssp -------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEEC----CSSCEEEEEECTTSS
T ss_pred -------------EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcC----CCCCEEEEEEcCCCC
Confidence 245677899999999999999999999999999 99975544443321 122477888874 4
Q ss_pred EEEEEEEeeCCCcEEEEEee
Q 003356 508 IIVVCNYIDSSNTYELLFYP 527 (827)
Q Consensus 508 ~li~~~~~~~~~~~~lrly~ 527 (827)
.+++++. +..|++|+
T Consensus 563 ~l~s~~~-----D~~i~~Wd 577 (577)
T 2ymu_A 563 TIASASS-----DKTVKLWN 577 (577)
T ss_dssp CEEEEET-----TSCEEEEC
T ss_pred EEEEEeC-----CCEEEEeC
Confidence 6776632 24577774
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-32 Score=323.92 Aligned_cols=457 Identities=9% Similarity=0.072 Sum_probs=314.3
Q ss_pred ceEEEEEecceEEEEEccCeEEEeecCCce----eEEEEEEeChHhhhhcCc-ccEEEEcC--CccEEEEEecCcEEEEE
Q 003356 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHK----VRLGKYKRDSESVQREGE-NLQAVWSP--DTKLIAVVTSSLYLHIF 94 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~~~~v~IW~~~~~~----~~l~~~~r~~~s~~~~G~-~~~v~wSP--Dg~~lav~t~dg~l~l~ 94 (827)
...++|||||++||+++++.|.||+.. .+ ..+..+. .+.+. +.+++|+| ||++||+++.||.|++|
T Consensus 21 v~~~~~spdg~~l~~~~~~~v~v~~~~-~~~~~~~~~~~~~------~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPCGKSAFVRCLD-DGDSKVPPVVQFT------GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECC-SSCCSSCSEEEEC------TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred eeEEEECCCCCEEEEecCCeEEEEECC-CCCCccccceEEe------cCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 445899999999999999999999995 44 3333332 13466 89999999 99999999999999999
Q ss_pred EEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEE--EeecCCCeEEEEecCC--cEEEEecCCccCcceeec
Q 003356 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDG--SLYSISWKGEFYGAFELV 170 (827)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~d~~~llv~t~dg--~i~~~~w~~~~~~~~~l~ 170 (827)
++..+..... . .......+..+...|. ++++++..+++++.+. ...++.|+... ..
T Consensus 94 ~~~~~~~~~~-------------~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~--~~--- 153 (615)
T 1pgu_A 94 GWTFDKESNS-------------V--EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN--SL--- 153 (615)
T ss_dssp EEEEEGGGTE-------------E--EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC--EE---
T ss_pred eCCCCccccc-------------c--cccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC--cc---
Confidence 9975421000 0 0000001122333444 4567778888888762 23445577221 11
Q ss_pred ccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCc-EEEEeeccCccccceeec
Q 003356 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIK 249 (827)
Q Consensus 171 ~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~~~~~~~~~~~~ 249 (827)
..+..+...|.++. ++++|+ .+++++.++.+++|+...
T Consensus 154 -------------------------------~~~~~~~~~v~~~~----------~~~~~~~~l~~~~~d~~v~vwd~~~ 192 (615)
T 1pgu_A 154 -------------------------------GEVSGHSQRINACH----------LKQSRPMRSMTVGDDGSVVFYQGPP 192 (615)
T ss_dssp -------------------------------EECCSCSSCEEEEE----------ECSSSSCEEEEEETTTEEEEEETTT
T ss_pred -------------------------------eeeecCCccEEEEE----------ECCCCCcEEEEEeCCCcEEEEeCCC
Confidence 01223445576666 667776 788888888899999766
Q ss_pred ccee---cCCCC---cEE-EEEcCC-CCEEEEEecCCeEEEEEcCCCCcceEEE-E---eecCCCCCCCCCCeEEEEECC
Q 003356 250 IDKE---LGSGD---AVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTV-S---LYDWGYSMDDTGPVSCIAWTP 317 (827)
Q Consensus 250 ~~~~---~~h~~---~v~-va~sp~-~~lla~g~~dg~v~vw~~~~~~~~~~~l-~---~~~~~~~~~h~~~V~~l~~sp 317 (827)
.+.. .+|.. .+. ++|+|+ +++|++|+.||.|++||+.+ ++.+..+ . . |.++|.+++|+
T Consensus 193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~--------~~~~v~~~~~~- 262 (615)
T 1pgu_A 193 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEP--------VQGGIFALSWL- 262 (615)
T ss_dssp BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBC--------CCSCEEEEEES-
T ss_pred cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCEeEEecccccc--------cCCceEEEEEc-
Confidence 5433 56777 776 999999 99999999999999999988 7777666 3 4 99999999999
Q ss_pred CCCEEEEEEcCCcEEEEeccCCeeEEEecccc---ccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecC
Q 003356 318 DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS---LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG 391 (827)
Q Consensus 318 Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~---~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~ 391 (827)
|+.+|++++.|+.|++||+.+++++.++..+. ...+.++.++ ++ ..++++. .+.+|+..+++......+
T Consensus 263 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~g~i~~~d~~~~~~~~~~~~ 337 (615)
T 1pgu_A 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN----GRIISLSLDGTLNFYELGHDEVLKTISG 337 (615)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET----TEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC----CeEEEEECCCCEEEEECCCCcEEEEEeC
Confidence 99999999999999999999999888887652 2456666664 44 5666665 889999988888777766
Q ss_pred CcceEEEEec-----------------------------------ceeeeecccCCCeeeeEEEEcC-------------
Q 003356 392 SSERVLIFSF-----------------------------------GKCCLNRGVSGMTYARQVIYGE------------- 423 (827)
Q Consensus 392 ~~~~v~~~~~-----------------------------------~~~~~s~~~d~~~~~w~~~~~~------------- 423 (827)
|...|..+.+ ++.+++++.|+.+++|++..+.
T Consensus 338 ~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~ 417 (615)
T 1pgu_A 338 HNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANND 417 (615)
T ss_dssp CSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSS
T ss_pred CCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCC
Confidence 6655544443 6677788888888888876521
Q ss_pred --------------------------------------CeEEEEecC-CCCcceEEE--eeec-eeeccCCCcEEEEEEc
Q 003356 424 --------------------------------------DRLLVVQSE-DTDELKILH--LNLP-VSYISQNWPVQHVAAS 461 (827)
Q Consensus 424 --------------------------------------~~~~~~~~~-d~~~~~w~~--~~~p-~~~~~~~~~I~~va~S 461 (827)
.+.++..+. +.....|.. .++. ..+.+|..+|.+++|+
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s 497 (615)
T 1pgu_A 418 GFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS 497 (615)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC
T ss_pred CCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC
Confidence 112222222 444445521 1111 5566899999999999
Q ss_pred CCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeC------------CEEEEEEEeeCCCcEEEEEeeC
Q 003356 462 KDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG------------KIIVVCNYIDSSNTYELLFYPR 528 (827)
Q Consensus 462 pdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~------------~~li~~~~~~~~~~~~lrly~~ 528 (827)
|||++||+|+.||.+ +||+.+++-..-... .+...|..++|.. ..+++++ .+..+++|..
T Consensus 498 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~-----~dg~i~iw~~ 570 (615)
T 1pgu_A 498 PSETYIAAGDVMGKILLYDLQSREVKTSRWA--FRTSKINAISWKPAEKGANEEEIEEDLVATGS-----LDTNIFIYSV 570 (615)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEECCSC--CCSSCEEEEEECCCC------CCSCCEEEEEE-----TTSCEEEEES
T ss_pred CCCCEEEEcCCCCeEEEeeCCCCcceeEeec--CCCCceeEEEEcCccccccccccCCCEEEEEc-----CCCcEEEEEC
Confidence 999999999999999 999998875321111 0223477888954 4555552 2247999988
Q ss_pred CCCCccceEEEE-ecCCcc--EEEEccCCEEEEEEcCceEEEEEEE
Q 003356 529 YHLDQSSLLCRK-SLLAKP--IVMDVYEDYILVTYRPFDVHIFHVK 571 (827)
Q Consensus 529 ~~l~~~~~~~~~-~l~~~~--~~l~~~~~~llV~~~~~~i~l~~~~ 571 (827)
.... ..+... .+...+ +.++..+. ++.++.|+.+++|++.
T Consensus 571 ~~~~--~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 571 KRPM--KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp SCTT--CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred CCCc--eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 6211 122221 123333 34455666 7778889999999975
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.3e-33 Score=356.79 Aligned_cols=498 Identities=13% Similarity=0.096 Sum_probs=332.4
Q ss_pred ceEEEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
...++|||||+++|+++ +++|+||+.. .+..+..+. .+.+.+.+++|+|||++||+++.||.|++||+..+.
T Consensus 618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~-~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCGADKTLQVFKAE-TGEKLLDIK------AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK 690 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECC-CCCEEEEec------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Confidence 34589999999999984 6889999995 665555543 234788999999999999999999999999986554
Q ss_pred ceeecCCCCC----------------------CCceeeeEeeEeecccccccccceEEE--eecCCCeEEEEecCCcEEE
Q 003356 101 KSIQIGGKQP----------------------SGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYS 156 (827)
Q Consensus 101 ~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d~~~llv~t~dg~i~~ 156 (827)
......++.. ....+|+++-. .....+.++...|.+ +++++..+++++.||.+++
T Consensus 691 ~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 3222211111 11233332110 001123345555655 4677789999999999999
Q ss_pred EecCCccCc-ceeec--------------------------------------------------ccCCCCcccceeccc
Q 003356 157 ISWKGEFYG-AFELV--------------------------------------------------HSSNDSSVAALSHHF 185 (827)
Q Consensus 157 ~~w~~~~~~-~~~l~--------------------------------------------------~~p~~~~~i~~~~~s 185 (827)
|+....... ..... ....+...+..+.|+
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence 765432110 00000 000111122223333
Q ss_pred CCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce-------------
Q 003356 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK------------- 252 (827)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~------------- 252 (827)
+++........+.....+.......+..+..+......+.+++||+.+++++.++++++|+......
T Consensus 850 p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 929 (1249)
T 3sfz_A 850 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929 (1249)
T ss_dssp SSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEE
Confidence 3333222222222222232222223333322223334567889999999999999999998542100
Q ss_pred ---------------------------ecCCCCcE-EEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCC
Q 003356 253 ---------------------------ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (827)
Q Consensus 253 ---------------------------~~~h~~~v-~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~ 304 (827)
...+...+ +++++|+++++|+|+.||.|++|++.+ +.....+.+
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~------- 1001 (1249)
T 3sfz_A 930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVG------- 1001 (1249)
T ss_dssp EETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-TSCEEECCC-------
T ss_pred EcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-Cceeeeccc-------
Confidence 00112234 499999999999999999999999988 777776666
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccC
Q 003356 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (827)
Q Consensus 305 ~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~ 381 (827)
|.+.|++++|+|||++|++|+.||.|++|++.++.... +..| ...+.+++++|++ . +++++ .+.+|+..
T Consensus 1002 -h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~-~~~v~~~~~~~~~----~-l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 1002 -HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAH-QETVKDFRLLQDS----R-LLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp -CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCC-SSCEEEEEECSSS----E-EEEEESSSEEEEEETT
T ss_pred -CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecC-CCcEEEEEEcCCC----c-EEEEECCCcEEEEECC
Confidence 99999999999999999999999999999999987664 3344 6789999999975 4 44443 89999999
Q ss_pred CceEEEEecCCcceE--EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEE
Q 003356 382 GYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (827)
Q Consensus 382 ~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~v 458 (827)
++++.....+|...| .++++ ++.+++++.|+++++|++..+.. ...+.+|..+|.++
T Consensus 1074 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~--------------------~~~l~~h~~~v~~~ 1133 (1249)
T 3sfz_A 1074 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP--------------------LHELKGHNGCVRCS 1133 (1249)
T ss_dssp TTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC--------------------SBCCCCCSSCEEEE
T ss_pred CCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce--------------------eeeeccCCCcEEEE
Confidence 999888888888888 45555 88899999999999999755443 45677899999999
Q ss_pred EEcCCCCEEEEEeCCceE-EEEcCCCeEEe-eCCcc-----ceEEEEEEEEEEeCC--EEEEEEEeeCCCcEEEEEeeCC
Q 003356 459 AASKDGMFLAVAGLHGLI-LYDIRQKKWRV-FGDIT-----QEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 459 a~SpdG~~lavag~dg~i-iwd~~t~~w~~-f~~~~-----~e~~~~v~gl~W~~~--~li~~~~~~~~~~~~lrly~~~ 529 (827)
+|||||+++|+|+.||.+ +||+.+++... +.... ..+...|.+++|..+ .++++ . ..+++|...
T Consensus 1134 ~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~--~-----g~v~vwd~~ 1206 (1249)
T 3sfz_A 1134 AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA--G-----GYLKWWNVA 1206 (1249)
T ss_dssp EECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE--S-----SSEEEBCSS
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC--C-----CeEEEEECC
Confidence 999999999999999999 99999876321 10000 111223678899754 55544 1 468999875
Q ss_pred CCCccceEEEEecCCccEEEEccCCEEEEEEcCceEEEEEE
Q 003356 530 HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV 570 (827)
Q Consensus 530 ~l~~~~~~~~~~l~~~~~~l~~~~~~llV~~~~~~i~l~~~ 570 (827)
............-+-..+.++..+..+++++.++.+.+|++
T Consensus 1207 ~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1207 TGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp SCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred CCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 11110011001111123566777788888899999999975
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-31 Score=322.66 Aligned_cols=410 Identities=11% Similarity=0.057 Sum_probs=268.7
Q ss_pred CceEEEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 003356 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (827)
Q Consensus 21 ~~~vv~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~ 99 (827)
....++|+|||++||+++ +++|+||+.. ....+..+ .+.+.+.+++|+| |++||+++.||+|++||+..+
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~-~~~~~~~~-------~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQ-QVEVVIKL-------EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECST-TCEEEEEC-------SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCC-CcEEEEEc-------CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 355689999999999994 7899999984 43332221 1346789999999 889999999999999998643
Q ss_pred CceeecCCCCCCCceeeeEeeEeecccccccccceEE--EeecCCCeEEEEecCCcEEEEecCCccCcceee-------c
Q 003356 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFEL-------V 170 (827)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l-------~ 170 (827)
.. +..+ . +...|. ++.++++.+++|+.||.|++|+.+......+.+ .
T Consensus 90 ~~-------------~~~~----~-------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~ 145 (902)
T 2oaj_A 90 KV-------------LTTV----F-------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSF 145 (902)
T ss_dssp SE-------------EEEE----E-------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHT
T ss_pred cE-------------EEEE----c-------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccc
Confidence 21 1111 1 112333 456778999999999999997765433211111 0
Q ss_pred ccCCCCcccceecccCCC--CccccccCCceeccccCCCcccEEEEEEc------------------CCcceEEEEEeCC
Q 003356 171 HSSNDSSVAALSHHFPSN--GLASVDTSGAFVSDHKFPISSAIIWLELC------------------LPMRLLFVLYSNG 230 (827)
Q Consensus 171 ~~p~~~~~i~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~------------------~~~~~~~~~s~dG 230 (827)
....+...+..+.|++++ .++++.. +... .|.......+..+.++ ......+.++|||
T Consensus 146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~-dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg 223 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPRDIGTVLISYE-YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS 223 (902)
T ss_dssp CSSSCCCCCCEEEEETTEEEEEEEECS-SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS
T ss_pred ccccCCCCeEEEEEccCCCCEEEEEeC-CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC
Confidence 011233456666666642 2333332 2333 4443333333333322 1123457789999
Q ss_pred cEEEEeeccCccccceeeccceec--------CC-------------CCcEE-EEEc----CCC-CEEEEEecC-----C
Q 003356 231 QLMSCSVSKKGLKLAEFIKIDKEL--------GS-------------GDAVC-ASIA----PEQ-QILAVGTRR-----G 278 (827)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~--------~h-------------~~~v~-va~s----p~~-~lla~g~~d-----g 278 (827)
+.+++++.|+++++|+..+++... +| ...+. ++|+ |++ .++++|+.| .
T Consensus 224 ~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~ 303 (902)
T 2oaj_A 224 LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQ 303 (902)
T ss_dssp SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCC
T ss_pred CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCc
Confidence 999999999999999987654321 12 34566 8884 443 577777665 2
Q ss_pred eEEEEEcCC-----------------------------CC------------------------------cceEEEEeec
Q 003356 279 VVELYDLAE-----------------------------SA------------------------------SLIRTVSLYD 299 (827)
Q Consensus 279 ~v~vw~~~~-----------------------------~~------------------------------~~~~~l~~~~ 299 (827)
.+++|++.. .. ..++.+....
T Consensus 304 ~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~ 383 (902)
T 2oaj_A 304 SLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS 383 (902)
T ss_dssp CEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT
T ss_pred eEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC
Confidence 566666310 00 0001110000
Q ss_pred ----C----------------------------------------CCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 003356 300 ----W----------------------------------------GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (827)
Q Consensus 300 ----~----------------------------------------~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs 335 (827)
. ....+|...+.+++|+|||+.||+|+.|++|++||
T Consensus 384 g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd 463 (902)
T 2oaj_A 384 GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYD 463 (902)
T ss_dssp CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEE
T ss_pred CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEE
Confidence 0 00113444555667789999999999999999999
Q ss_pred ccCCeeEE--Ee----c-----cccccceeeeeecCCCCCCccceeecc---eeEEEccCCc------------------
Q 003356 336 VSGCRLMS--TI----R-----QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY------------------ 383 (827)
Q Consensus 336 ~~~~~l~~--tl----~-----~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~------------------ 383 (827)
+.++++.. .+ . +| ...|.+++|+|++ ..+++|+ ++++|+..++
T Consensus 464 ~~~g~~~~~~~~~~~l~~~~~~~h-~~~V~svafspdg----~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~ 538 (902)
T 2oaj_A 464 ASHGDIQDNASFEVNLSRTLNKAK-ELAVDKISFAAET----LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF 538 (902)
T ss_dssp SSCCTTTTTBCEEEEHHHHTTCSS-SCCEEEEEEETTT----TEEEEEETTSCEEEEEEEECCC---------------C
T ss_pred CCCccccCCceEEeechhhcCCCC-CCceeEEEecCCC----CeEEEEecCcEEEEEEecCccccCccccCCCcccceee
Confidence 98774311 11 1 34 5689999999999 8899887 8999998755
Q ss_pred ---------------------------eEEEEecCCcceEEEE--ec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCC
Q 003356 384 ---------------------------RLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (827)
Q Consensus 384 ---------------------------~l~~~~~~~~~~v~~~--~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d 433 (827)
+++..+.+|.+.|.++ ++ + .+++|+.|+++++|++. ...+ ++.+
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~--~~~~-~~~~-- 612 (902)
T 2oaj_A 539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR--GPAI-IYME-- 612 (902)
T ss_dssp CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETT--TTEE-EEEE--
T ss_pred eeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECC--CCeE-EEEe--
Confidence 3467778899888554 44 7 99999999999999942 2211 1110
Q ss_pred CCcceEEEeeeceeec-cCCCcEEEEEEc-----CCC---CEEEEEeCCceE-EEEc---CCCeEE
Q 003356 434 TDELKILHLNLPVSYI-SQNWPVQHVAAS-----KDG---MFLAVAGLHGLI-LYDI---RQKKWR 486 (827)
Q Consensus 434 ~~~~~w~~~~~p~~~~-~~~~~I~~va~S-----pdG---~~lavag~dg~i-iwd~---~t~~w~ 486 (827)
++ ..+. +|...|++++|| ||| ++|++|+.||++ +||+ .+|++.
T Consensus 613 ---------~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~ 668 (902)
T 2oaj_A 613 ---------NI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFD 668 (902)
T ss_dssp ---------EG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEE
T ss_pred ---------eh-hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEE
Confidence 11 3444 899999999999 886 899999999999 9999 788764
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=5e-31 Score=289.55 Aligned_cols=319 Identities=12% Similarity=0.107 Sum_probs=204.4
Q ss_pred EEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEec------CcEEEEEEEEe
Q 003356 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS------SLYLHIFKVQI 98 (827)
Q Consensus 25 v~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~------dg~l~l~~v~~ 98 (827)
+.+.+++.++...++.....|+.. +..+ + .+.+.+.+++|||||++||+++. ||.+++|+...
T Consensus 11 ~d~g~~~~~~~~~g~~~~~~w~~p-~~~p-~---------~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~ 79 (357)
T 4g56_B 11 VDLGTENLYFQSNGSSKGSAWGRP-VTAP-A---------CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE 79 (357)
T ss_dssp ----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC
T ss_pred CCCCccceEEecCCCccccccCCC-CCCc-c---------cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCC
Confidence 345666777777777888999983 4322 1 13467889999999999999998 67777777643
Q ss_pred cCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCC-CeEEEEecCCcEEEEecCCccCcceeecccCCCCc
Q 003356 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (827)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~-~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~ 177 (827)
+.... .......++...|.+++..+ ..+++++.||.|++ |+........
T Consensus 80 ~~~~~-------------------~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~l--Wd~~~~~~~~--------- 129 (357)
T 4g56_B 80 GAPNE-------------------SLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVEL--WEILEKESLL--------- 129 (357)
T ss_dssp ---CG-------------------GGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEE--C--------C---------
T ss_pred CCcce-------------------eEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEE--eeccccceeE---------
Confidence 32110 00001122334455554332 46788899999988 5433222110
Q ss_pred ccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---c
Q 003356 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---L 254 (827)
Q Consensus 178 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~ 254 (827)
.. ......+...|.+++ ++|||+.+++++.++++++|+..+++.. .
T Consensus 130 -~~--------------------~~~~~~h~~~V~~v~----------~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~ 178 (357)
T 4g56_B 130 -VN--------------------KFAKYEHDDIVKTLS----------VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN 178 (357)
T ss_dssp -CC--------------------CEEECCCSSCEEEEE----------ECSSSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred -EE--------------------eeccCCCCCCEEEEE----------ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 00 011123455676665 7889999999999999999998776543 6
Q ss_pred CCCCcEE-EEEcCCCC-EEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC-CCEEEEEEcCCcE
Q 003356 255 GSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGL 331 (827)
Q Consensus 255 ~h~~~v~-va~sp~~~-lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD-g~~Lasg~~Dg~v 331 (827)
+|...+. ++|+|+++ ++++++.||+|++||+.+ ++....+.. ..|...|.+++|+|+ +++||+|+.|+.|
T Consensus 179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~~~------~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRIDF------CASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCBCCC------TTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred CCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeeeeee------ccccccccchhhhhcccceEEEeecccce
Confidence 7888887 99999875 899999999999999987 555443332 127788999999997 5689999999999
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccC
Q 003356 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVS 411 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d 411 (827)
++||+.++++..++.+| ...|++++|+|++ . +.+++++.|
T Consensus 252 ~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~----~-----------------------------------~~lasgs~D 291 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVH-SQNITGLAYSYHS----S-----------------------------------PFLASISED 291 (357)
T ss_dssp EEEESSCGGGCEEECCC-SSCEEEEEECSSS----S-----------------------------------CCEEEEETT
T ss_pred eEEECCCCcEeEEEecc-ceeEEEEEEcCCC----C-----------------------------------CEEEEEeCC
Confidence 99999999888888877 5678888888775 2 234566777
Q ss_pred CCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcC-CCCEEEEEeCCceE-EEEcCCC
Q 003356 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Sp-dG~~lavag~dg~i-iwd~~t~ 483 (827)
+++++|++..++ +....+|..+|++++||| ||++||+||.||.+ +|++.+.
T Consensus 292 ~~i~iwd~~~~~---------------------~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 292 CTVAVLDADFSE---------------------VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SCEEEECTTSCE---------------------EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CEEEEEECCCCc---------------------EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 777777643221 123457889999999998 89999999999999 9998653
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=6.8e-30 Score=278.43 Aligned_cols=279 Identities=14% Similarity=0.154 Sum_probs=208.1
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceE--EEeecCCC
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNK 143 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~~d~~ 143 (827)
+.+.+.+++|+|||++||+++.||+|++||+........ +..+...| .+++++++
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~-----------------------~~~~~~~v~~~~~s~~~~ 110 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA-----------------------IPLRSSWVMTCAYAPSGN 110 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE-----------------------EECSSSCEEEEEECTTSS
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceE-----------------------eecCCccEEEEEECCCCC
Confidence 347889999999999999999999999999754321110 11122223 35678889
Q ss_pred eEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceE
Q 003356 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (827)
Q Consensus 144 ~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (827)
.+++++.|+.+++|+.......... ...+..+...+..+
T Consensus 111 ~l~s~~~d~~v~iw~~~~~~~~~~~--------------------------------~~~~~~h~~~v~~~--------- 149 (340)
T 1got_B 111 YVACGGLDNICSIYNLKTREGNVRV--------------------------------SRELAGHTGYLSCC--------- 149 (340)
T ss_dssp EEEEEETTCEEEEEETTTCSBSCEE--------------------------------EEEEECCSSCEEEE---------
T ss_pred EEEEEeCCCeEEEEECccCCCccee--------------------------------EEEecCCCccEEEE---------
Confidence 9999999999999765432211000 01112233445443
Q ss_pred EEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
.++++++ +++++.|+++++|+..+++.. .+|...+. ++|+|+++++++|+.||+|++||+.+ +.....+.+
T Consensus 150 -~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~-- 224 (340)
T 1got_B 150 -RFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTG-- 224 (340)
T ss_dssp -EEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECC--
T ss_pred -EECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcC--
Confidence 3667776 677888999999998766543 67888887 99999999999999999999999988 777888877
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecccc-ccceeeeeecCCCCCCccceeecceeEEE
Q 003356 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~-~~~v~s~~~sp~~~~~~~~l~sg~~i~~W 378 (827)
|.+.|++++|+|||++||+|+.||+|++||+..++.+.++.... ...+.+++|+|++
T Consensus 225 ------h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------------- 282 (340)
T 1got_B 225 ------HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG---------------- 282 (340)
T ss_dssp ------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS----------------
T ss_pred ------CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC----------------
Confidence 99999999999999999999999999999999887766654321 2245555555554
Q ss_pred ccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEE
Q 003356 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (827)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~v 458 (827)
+.+++++.|+.+++|++..+.. ...+.+|..+|.++
T Consensus 283 ------------------------~~l~~g~~d~~i~vwd~~~~~~--------------------~~~~~~h~~~v~~~ 318 (340)
T 1got_B 283 ------------------------RLLLAGYDDFNCNVWDALKADR--------------------AGVLAGHDNRVSCL 318 (340)
T ss_dssp ------------------------SEEEEEETTSEEEEEETTTCCE--------------------EEEEECCSSCEEEE
T ss_pred ------------------------CEEEEECCCCeEEEEEcccCcE--------------------eeEeecCCCcEEEE
Confidence 3445666677777777533222 34566899999999
Q ss_pred EEcCCCCEEEEEeCCceE-EEE
Q 003356 459 AASKDGMFLAVAGLHGLI-LYD 479 (827)
Q Consensus 459 a~SpdG~~lavag~dg~i-iwd 479 (827)
+|+|||++||+|+.||.+ +||
T Consensus 319 ~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 319 GVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSCEEEEETTSCEEEEC
T ss_pred EEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999 996
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=5.4e-30 Score=276.91 Aligned_cols=274 Identities=15% Similarity=0.168 Sum_probs=226.6
Q ss_pred ccccceEEEeec------CCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceecc
Q 003356 129 AEKGLSVSNIVS------DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSD 202 (827)
Q Consensus 129 ~~~~~~v~~~~~------d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~ 202 (827)
.++...|.+++. +++.+++|+.|+.+++|+++....... .
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~----------------------------------~ 74 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ----------------------------------W 74 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE----------------------------------E
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee----------------------------------e
Confidence 456667777754 345799999999999987754321100 1
Q ss_pred ccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCC
Q 003356 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRG 278 (827)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg 278 (827)
.+..+...|.++. +++++.++++++.|+++++|+..+++.. ..|...+. ++|+|++++||+|+.||
T Consensus 75 ~l~gh~~~v~~~~----------~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg 144 (321)
T 3ow8_A 75 SLEGHQLGVVSVD----------ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVG 144 (321)
T ss_dssp EECCCSSCEEEEE----------ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTS
T ss_pred eeccCCCCEEEEE----------ECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence 1234555676665 6788889999999999999998766543 45555555 99999999999999999
Q ss_pred eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeee
Q 003356 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (827)
Q Consensus 279 ~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~ 358 (827)
+|++|++.+ ++....+.. |...|.+++|+|||++||+|+.||.|++||+.+++++.++.+| ...|.+++|
T Consensus 145 ~v~i~~~~~-~~~~~~~~~--------~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~ 214 (321)
T 3ow8_A 145 KVNIFGVES-GKKEYSLDT--------RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTF 214 (321)
T ss_dssp EEEEEETTT-CSEEEEEEC--------SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCCCEEEE
T ss_pred cEEEEEcCC-CceeEEecC--------CCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-CCceeEEEE
Confidence 999999988 677777776 8889999999999999999999999999999999999999887 678999999
Q ss_pred cCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecC
Q 003356 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (827)
Q Consensus 359 sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~ 432 (827)
+|++ ..+++|+ ++++|+..+.++...+.+|...|..+.| ++.+++++.|+++++|++..+..
T Consensus 215 spd~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~-------- 282 (321)
T 3ow8_A 215 SPDS----QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC-------- 282 (321)
T ss_dssp CTTS----CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------
T ss_pred cCCC----CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE--------
Confidence 9998 8888886 8999999999999999999998865555 78899999999999999644322
Q ss_pred CCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 433 d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
..++.+|..+|.+++|+|+|++|++++.||.+ +||.
T Consensus 283 ------------~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 283 ------------VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ------------EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ------------EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 45677899999999999999999999999999 9996
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=277.10 Aligned_cols=303 Identities=13% Similarity=0.095 Sum_probs=211.0
Q ss_pred CcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEE--eecCCCeE
Q 003356 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHM 145 (827)
Q Consensus 68 G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d~~~l 145 (827)
+.+..++|||||++||+++.||+|++|++..+.... ......++...|.+ ++++++.|
T Consensus 17 ~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~--------------------~~~~~~~h~~~v~~~~~sp~g~~l 76 (345)
T 3fm0_A 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC--------------------KSVLSEGHQRTVRKVAWSPCGNYL 76 (345)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--------------------EEEECSSCSSCEEEEEECTTSSEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--------------------eeeeccccCCcEEEEEECCCCCEE
Confidence 378899999999999999999999999987432100 00011334445554 46778899
Q ss_pred EEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEE
Q 003356 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (827)
Q Consensus 146 lv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (827)
++++.|+.+++|+.+....... ..+..+...|.++.
T Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~----------------------------------~~~~~h~~~v~~v~---------- 112 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDFECV----------------------------------TTLEGHENEVKSVA---------- 112 (345)
T ss_dssp EEEETTSCEEEEEECCC-EEEE----------------------------------EEECCCSSCEEEEE----------
T ss_pred EEEECCCcEEEEEccCCCeEEE----------------------------------EEccCCCCCceEEE----------
Confidence 9999999999865543211100 11234455676665
Q ss_pred EEeCCcEEEEeeccCccccceeeccc------eecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCc--ceEEEE
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKID------KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS--LIRTVS 296 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~------~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~--~~~~l~ 296 (827)
++|||+.+++++.|+++++|+..... .+.+|...+. ++|+|++++||+|+.|++|++|+... +. ...++.
T Consensus 113 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~ 191 (345)
T 3fm0_A 113 WAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLE 191 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEEC
T ss_pred EeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEec
Confidence 67889999999999999999986542 2367888887 99999999999999999999999987 43 334666
Q ss_pred eecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeE
Q 003356 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMM 376 (827)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~ 376 (827)
+ |.+.|++++|+|||++||+|+.|++|++|+..... . ...+.. .....
T Consensus 192 ~--------h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~-------~-~~~~~~----------------~~~~~ 239 (345)
T 3fm0_A 192 G--------HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG-------N-EQGVAC----------------SGSDP 239 (345)
T ss_dssp C--------CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTT-------C-TTCCCC----------------C---C
T ss_pred C--------CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCC-------C-Ccccee----------------eccCC
Confidence 6 99999999999999999999999999999974321 0 000000 00000
Q ss_pred EEccCCceEEEEecC-CcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeee-ceeeccC
Q 003356 377 QWDEYGYRLYAIEEG-SSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL-PVSYISQ 451 (827)
Q Consensus 377 ~W~~~~~~l~~~~~~-~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~-p~~~~~~ 451 (827)
..+++....+ |...|+.+.+ +..+++++.|+++++|+....... .... ..+ .....+|
T Consensus 240 -----~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~---------~~~~---~~~~~~~~~~h 302 (345)
T 3fm0_A 240 -----SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDP---------QQPT---FSLTAHLHQAH 302 (345)
T ss_dssp -----EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCT---------TSCC---EEEEEEETTSS
T ss_pred -----ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCc---------ceee---EEEEeeecccc
Confidence 1122333333 5666755554 678899999999999987543220 0000 000 1123579
Q ss_pred CCcEEEEEEcCCC-CEEEEEeCCceE-EEEcCCCe
Q 003356 452 NWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 452 ~~~I~~va~SpdG-~~lavag~dg~i-iwd~~t~~ 484 (827)
..+|.+++|+|++ .+||+||.||.+ +|++.+++
T Consensus 303 ~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 303 SQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 9999999999998 599999999999 99998875
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=2.6e-29 Score=281.37 Aligned_cols=277 Identities=13% Similarity=0.153 Sum_probs=229.4
Q ss_pred cccccceEEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccC
Q 003356 128 FAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (827)
Q Consensus 128 ~~~~~~~v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~ 205 (827)
+.++...|.++ .+++..+++|+.||.|++|++....... .+.
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~------------------------------------~l~ 147 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER------------------------------------TLK 147 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE------------------------------------EEC
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE------------------------------------EEe
Confidence 45666677765 5666789999999999997665322110 123
Q ss_pred CCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEE
Q 003356 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVE 281 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~ 281 (827)
.+...|.++. ++++|+++++++.|+++++|+....+.. .+|...+. ++|+|++++|++|+.|++|+
T Consensus 148 ~h~~~V~~v~----------~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~ 217 (410)
T 1vyh_C 148 GHTDSVQDIS----------FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217 (410)
T ss_dssp CCSSCEEEEE----------ECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ccCCcEEEEE----------EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 3455576665 6788999999999999999998765543 67888887 99999999999999999999
Q ss_pred EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCC
Q 003356 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (827)
Q Consensus 282 vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (827)
+||+.+ +..+.++.+ |...|.+++|+|||.+|++|+.|++|++||+.++.+..++.+| ...|.+++|+|+
T Consensus 218 ~wd~~~-~~~~~~~~~--------h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~ 287 (410)
T 1vyh_C 218 MWEVQT-GYCVKTFTG--------HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH-RHVVECISWAPE 287 (410)
T ss_dssp EEETTT-CCEEEEEEC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECCS
T ss_pred EEECCC-CcEEEEEeC--------CCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCC-CceEEEEEEcCc
Confidence 999998 788888888 9999999999999999999999999999999999999999887 678999999997
Q ss_pred CCC----------------Cccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEE
Q 003356 362 QDC----------------KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 362 ~~~----------------~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~ 419 (827)
... ....+++|+ ++++|+..+++++..+.+|...|..+.+ ++.+++++.|+++++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp CGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred ccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 420 024577776 7999999999999999999998855554 789999999999999997
Q ss_pred EEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 420 IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 420 ~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
..+.. ...+.+|..+|.+++|+|+|++||+|+.||.+ +|++
T Consensus 368 ~~~~~--------------------~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 368 KNKRC--------------------MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTSCC--------------------CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCce--------------------EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 44333 55677899999999999999999999999999 9986
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=6e-30 Score=279.18 Aligned_cols=225 Identities=14% Similarity=0.108 Sum_probs=184.1
Q ss_pred EEeCCcEEEEeeccCccccceeecccee-------cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEe
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
+++|++ +++++.|+++++|+..+++.. .+|.+.|. ++|+|++++||+|+.||+|++||+.+ ++.++++.+
T Consensus 90 ~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-~~~~~~~~~ 167 (344)
T 4gqb_B 90 WVGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYRA 167 (344)
T ss_dssp EETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC
T ss_pred EeCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcC
Confidence 677765 567888999999998765432 48999887 99999999999999999999999998 888888888
Q ss_pred ecCCCCCCCCCCeEEEEECCCCC-EEEEEEcCCcEEEEeccCCeeEEEeccc-cccceeeeeecCCCCCCccceeecc--
Q 003356 298 YDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT-- 373 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spDg~-~Lasg~~Dg~v~vWs~~~~~l~~tl~~~-~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (827)
|.+.|.+++|+|++. +|++|+.|++|++||+.+++...++..+ +...+.+++|+|++. ..+++|+
T Consensus 168 --------h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~l~sg~~d 236 (344)
T 4gqb_B 168 --------HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS---EVFVFGDEN 236 (344)
T ss_dssp --------CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT---TEEEEEETT
T ss_pred --------cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC---cceEEeccC
Confidence 999999999999985 7899999999999999998888877542 234688999999651 4567765
Q ss_pred -eeEEEccCCceEEEEecCCcceEEEEec---c-eeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceee
Q 003356 374 -SMMQWDEYGYRLYAIEEGSSERVLIFSF---G-KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (827)
Q Consensus 374 -~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~-~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~ 448 (827)
++++|+..+++++..+.+|...|..+.| + +.+++++.|+++++|++..++ ...+
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---------------------~~~~ 295 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---------------------LFRS 295 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---------------------EEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---------------------EEEE
Confidence 7999999999999999999999965554 4 568899999999999853321 2346
Q ss_pred ccCCCcEEEEEEcCCCC-EEEEEeCCceE-EEEcCCCe
Q 003356 449 ISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 449 ~~~~~~I~~va~SpdG~-~lavag~dg~i-iwd~~t~~ 484 (827)
.+|..+|++++|||+|+ .+++||.||.+ +|++.+..
T Consensus 296 ~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 296 QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 78999999999999986 57799999999 99997753
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=9e-29 Score=267.03 Aligned_cols=288 Identities=14% Similarity=0.121 Sum_probs=215.3
Q ss_pred hcCcccEEEEcCCc-cEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEE--EeecCC
Q 003356 66 REGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDN 142 (827)
Q Consensus 66 ~~G~~~~v~wSPDg-~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~d~ 142 (827)
+.|.+.+++|+|++ ++|++++.||+|++|++........ .++ ..+.++...|. ++++++
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------~~~----------~~~~~h~~~v~~~~~s~dg 77 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------VPV----------RSFKGHSHIVQDCTLTADG 77 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------EEE----------EEEECCSSCEEEEEECTTS
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------ccc----------eEEeCCcccEEEEEECCCC
Confidence 44888999999976 8999999999999999975432110 001 11334445554 457788
Q ss_pred CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcce
Q 003356 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (827)
Q Consensus 143 ~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (827)
..+++++.|+.|++|+.. ..... ..+..+...|.++.
T Consensus 78 ~~l~s~s~D~~v~~wd~~--~~~~~----------------------------------~~~~~h~~~v~~~~------- 114 (319)
T 3frx_A 78 AYALSASWDKTLRLWDVA--TGETY----------------------------------QRFVGHKSDVMSVD------- 114 (319)
T ss_dssp SEEEEEETTSEEEEEETT--TTEEE----------------------------------EEEECCSSCEEEEE-------
T ss_pred CEEEEEeCCCEEEEEECC--CCCee----------------------------------EEEccCCCcEEEEE-------
Confidence 899999999999986543 22111 01223455566655
Q ss_pred EEEEEeCCcEEEEeeccCccccceeeccc--eecCCCCcEE-EEEcCC------CCEEEEEecCCeEEEEEcCCCCcceE
Q 003356 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIAPE------QQILAVGTRRGVVELYDLAESASLIR 293 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~-va~sp~------~~lla~g~~dg~v~vw~~~~~~~~~~ 293 (827)
++++|+.+++++.|+++++|+..... .+.+|...+. ++++|. +.++++|+.|++|++||+.+ .+...
T Consensus 115 ---~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~ 190 (319)
T 3frx_A 115 ---IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEA 190 (319)
T ss_dssp ---ECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEE
T ss_pred ---EcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhhe
Confidence 67889999999999999999975332 2368888887 999985 45899999999999999987 67777
Q ss_pred EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 003356 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
.+.+ |.++|.+++|+|||++||+|+.||+|++||+.+++++.++..+ ..+.+++|+|++ ..++.+.
T Consensus 191 ~~~~--------h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~----~~la~~~ 256 (319)
T 3frx_A 191 DFIG--------HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNR----YWLAAAT 256 (319)
T ss_dssp EECC--------CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSS----SEEEEEE
T ss_pred eecC--------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCC----CEEEEEc
Confidence 7777 9999999999999999999999999999999999999888764 579999999998 6665443
Q ss_pred --eeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccC
Q 003356 374 --SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (827)
Q Consensus 374 --~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~ 451 (827)
.+.+|+.+...++.....+ . ......|
T Consensus 257 ~~~i~v~~~~~~~~~~~~~~~-------------------------------~--------------------~~~~~~~ 285 (319)
T 3frx_A 257 ATGIKVFSLDPQYLVDDLRPE-------------------------------F--------------------AGYSKAA 285 (319)
T ss_dssp TTEEEEEEETTEEEEEEECCC-------------------------------C--------------------TTCCGGG
T ss_pred CCCcEEEEeCcCeeeeccCcc-------------------------------c--------------------cccccCc
Confidence 5566665544332221110 0 1112345
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCC
Q 003356 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 452 ~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~ 483 (827)
...+.+++|||||++|++|+.||.+ +||+.|+
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 6679999999999999999999999 9999765
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=4e-29 Score=274.02 Aligned_cols=284 Identities=12% Similarity=0.099 Sum_probs=209.6
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeE
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~l 145 (827)
+.+.+.+++|+||+++||+++.||+|++||.......... . .........++++++..+
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-----------------~----~~~~~v~~~~~sp~g~~l 121 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-----------------T----MPCTWVMACAYAPSGCAI 121 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----------------E----CSSSCCCEEEECTTSSEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-----------------e----cCCCCEEEEEECCCCCEE
Confidence 3477899999999999999999999999997533211100 0 111122334678889999
Q ss_pred EEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEE
Q 003356 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (827)
Q Consensus 146 lv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (827)
++++.|+.+.+|.+......... ... ..+..+...|.. +.
T Consensus 122 asg~~d~~i~v~~~~~~~~~~~~--------~~~----------------------~~~~~h~~~v~~----------~~ 161 (354)
T 2pbi_B 122 ACGGLDNKCSVYPLTFDKNENMA--------AKK----------------------KSVAMHTNYLSA----------CS 161 (354)
T ss_dssp EEESTTSEEEEEECCCCTTCCSG--------GGC----------------------EEEEECSSCEEE----------EE
T ss_pred EEeeCCCCEEEEEEecccccccc--------ccc----------------------eeeeccCCcEEE----------EE
Confidence 99999999999766532211100 000 011123334444 45
Q ss_pred EEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcC--CCCEEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp--~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
++++++.+++++.|+++++|+...++.. .+|...+. ++++| ++++|++|+.||+|++||+.+ ++.+..+..
T Consensus 162 ~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~-- 238 (354)
T 2pbi_B 162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFET-- 238 (354)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECC--
T ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecC--
Confidence 7888999999999999999998776543 67888776 88877 578999999999999999998 778888877
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecccc-ccceeeeeecCCCCCCccceeecceeEEE
Q 003356 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~-~~~v~s~~~sp~~~~~~~~l~sg~~i~~W 378 (827)
|.+.|++++|+|+|..||+|+.|++|++||+..++.+..+..+. ...+.+++|+|+
T Consensus 239 ------h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~----------------- 295 (354)
T 2pbi_B 239 ------HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS----------------- 295 (354)
T ss_dssp ------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT-----------------
T ss_pred ------CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC-----------------
Confidence 99999999999999999999999999999998887665554321 112333444433
Q ss_pred ccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEE
Q 003356 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (827)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~v 458 (827)
++.+++++.|+++++|++..+.. ...+.+|..+|.++
T Consensus 296 -----------------------g~~l~~g~~d~~i~vwd~~~~~~--------------------~~~l~~h~~~v~~l 332 (354)
T 2pbi_B 296 -----------------------GRLLFAGYNDYTINVWDVLKGSR--------------------VSILFGHENRVSTL 332 (354)
T ss_dssp -----------------------SSEEEEEETTSCEEEEETTTCSE--------------------EEEECCCSSCEEEE
T ss_pred -----------------------CCEEEEEECCCcEEEEECCCCce--------------------EEEEECCCCcEEEE
Confidence 34556777788888887644332 34567899999999
Q ss_pred EEcCCCCEEEEEeCCceE-EEE
Q 003356 459 AASKDGMFLAVAGLHGLI-LYD 479 (827)
Q Consensus 459 a~SpdG~~lavag~dg~i-iwd 479 (827)
+|||||++||+|+.||.+ +|+
T Consensus 333 ~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 333 RVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999 995
No 16
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-28 Score=297.75 Aligned_cols=489 Identities=11% Similarity=0.030 Sum_probs=293.4
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
...++|+| |++|+++ .+++|+||+.. .+..+..+. ..+.+.+++|+||+++||+++.||.|++||+....
T Consensus 61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~-~~~~~~~~~-------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~ 131 (902)
T 2oaj_A 61 IKEMRFVK-GIYLVVINAKDTVYVLSLY-SQKVLTTVF-------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ 131 (902)
T ss_dssp EEEEEEET-TTEEEEEETTCEEEEEETT-TCSEEEEEE-------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEEcC-CCEEEEEECcCeEEEEECC-CCcEEEEEc-------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 44589999 8888877 57899999995 555555542 34778999999999999999999999999986332
Q ss_pred ceeecCCCCCCCceeeeEeeEeecc-cccccccceEEEeecCC---CeEEEEecCCcEEEEecCCccCcceeeccc----
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQ-LPFAEKGLSVSNIVSDN---KHMLLGLSDGSLYSISWKGEFYGAFELVHS---- 172 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~v~~~~~d~---~~llv~t~dg~i~~~~w~~~~~~~~~l~~~---- 172 (827)
...+. +.. .... ....++...|.+++.++ ..+++|+.||.+ +|+....... ..+...
T Consensus 132 ~~~~~---------i~~----~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~-~~~~~~~~~g 196 (902)
T 2oaj_A 132 LSSFK---------LDN----LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK-QSFIYELPPF 196 (902)
T ss_dssp EEEEE---------ECC----HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE-EEECCCBCTT
T ss_pred cccce---------ecc----ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE-EEEecccCCc
Confidence 10000 000 0000 11234455566654433 578889999998 7655432211 111100
Q ss_pred -----------CCCCcccceecccCCCCccccccCCceeccccC----------------------------CCcccEEE
Q 003356 173 -----------SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF----------------------------PISSAIIW 213 (827)
Q Consensus 173 -----------p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~i~~ 213 (827)
.++...+..+.|++++....+...+.....|.. .+...|.+
T Consensus 197 ~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~ 276 (902)
T 2oaj_A 197 APGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISK 276 (902)
T ss_dssp CCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEE
T ss_pred CCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeE
Confidence 011244667777777653222222212211110 01335778
Q ss_pred EEEcCC----cceEEEEE--------------------------------------------------------------
Q 003356 214 LELCLP----MRLLFVLY-------------------------------------------------------------- 227 (827)
Q Consensus 214 i~~~~~----~~~~~~~s-------------------------------------------------------------- 227 (827)
++|++. ...+++..
T Consensus 277 v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp 356 (902)
T 2oaj_A 277 VYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSP 356 (902)
T ss_dssp EEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCS
T ss_pred EEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCC
Confidence 887432 11111111
Q ss_pred -----eCCcEEEEeeccCccccceeeccce--------------------------------------------ecCCCC
Q 003356 228 -----SNGQLMSCSVSKKGLKLAEFIKIDK--------------------------------------------ELGSGD 258 (827)
Q Consensus 228 -----~dG~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~h~~ 258 (827)
.|+..+++.+.++++++|+...+.. +.+|..
T Consensus 357 ~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~ 436 (902)
T 2oaj_A 357 YFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVR 436 (902)
T ss_dssp HHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBC
T ss_pred CcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcC
Confidence 0122445555667788887533211 123333
Q ss_pred cEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcce--EEEEee-cCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEE
Q 003356 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLI--RTVSLY-DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (827)
Q Consensus 259 ~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~--~~l~~~-~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vW 334 (827)
.+. ++|+|++++||+|+.||+|++||+.+ +... ..+... ......+|.+.|++++|+|||++||+|+.||+|+||
T Consensus 437 ~v~sv~~spdg~~laSgs~DgtVrlWd~~~-g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lw 515 (902)
T 2oaj_A 437 TKRQKLPAEYGTAFITGHSNGSVRIYDASH-GDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLF 515 (902)
T ss_dssp CCCCCCCCSEEEEEEEEETTSEEEEEESSC-CTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CCCcccccccCcEEEEecCCCcEEEEECCC-ccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEE
Confidence 343 56789999999999999999999987 4321 112110 000012489999999999999999999999999999
Q ss_pred eccCC---------------------------------------------eeEEEeccccccceeeeeecCCCCCCccce
Q 003356 335 SVSGC---------------------------------------------RLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (827)
Q Consensus 335 s~~~~---------------------------------------------~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l 369 (827)
++.++ +++.++.+| ...|++++|+|++ .+
T Consensus 516 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h-~~~V~svafSpdG-----~l 589 (902)
T 2oaj_A 516 KYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN-KGKTSAINNSNIG-----FV 589 (902)
T ss_dssp EEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC-SCSEEEEEECBTS-----EE
T ss_pred EecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC-CCcEEEEEecCCc-----EE
Confidence 99766 246677777 6789999999986 56
Q ss_pred eecc---eeEEEccCCceEEEE-----e-cCCcceEEEEecc-----------eeeeecccCCCeeeeEEEEcCC--eEE
Q 003356 370 MSGT---SMMQWDEYGYRLYAI-----E-EGSSERVLIFSFG-----------KCCLNRGVSGMTYARQVIYGED--RLL 427 (827)
Q Consensus 370 ~sg~---~i~~W~~~~~~l~~~-----~-~~~~~~v~~~~~~-----------~~~~s~~~d~~~~~w~~~~~~~--~~~ 427 (827)
++|+ ++++|+..+..++.. + .+|...|..+.|. +.+++++.|+++++|++.-... .+.
T Consensus 590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~ 669 (902)
T 2oaj_A 590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDV 669 (902)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEE
T ss_pred EEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEE
Confidence 6665 799999998877642 2 2788888555443 7899999999999999843222 110
Q ss_pred EEecCCCCcceEEEeeeceeeccCCCcEEEEE-Ec----------------------CCCCEEEEEeCCceE-EEEcCCC
Q 003356 428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVA-AS----------------------KDGMFLAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 428 ~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va-~S----------------------pdG~~lavag~dg~i-iwd~~t~ 483 (827)
... ......|..+|.+++ |+ ++|..||++ +..+ +|++.++
T Consensus 670 ~~~--------------~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~ 733 (902)
T 2oaj_A 670 QLM--------------DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKS 733 (902)
T ss_dssp EEE--------------EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCC
T ss_pred Eec--------------CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccc
Confidence 000 111233456776666 65 667666554 4556 9999998
Q ss_pred eEE--eeCCccceEEEEEEEE---E------EeCC-EEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEecCCc------
Q 003356 484 KWR--VFGDITQEQKIQSKGL---L------WLGK-IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAK------ 545 (827)
Q Consensus 484 ~w~--~f~~~~~e~~~~v~gl---~------W~~~-~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~~~------ 545 (827)
+.. .|+.. ..+..+ . ...+ ..+++.. ...++++|+.+.|.. +.+..+|..
T Consensus 734 k~~~k~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~l~~~~----~~g~i~~~s~p~l~~---~~~~~~~~~~~~~~~ 801 (902)
T 2oaj_A 734 KSTHKGFKYP-----LAATGLSYISTVEKNNDRKNLTVIITLE----INGHLRVFTIPDFKE---QMSEHIPFPIAAKYI 801 (902)
T ss_dssp CEEEEECSSC-----EEEEEEEEEEEECSSSCEEEEEEEEEEE----TTSEEEEEETTTCCE---EEEEECSSCCCHHHH
T ss_pred cceeeEcccc-----eeeeEEEEEEeccccccccCceEEEEEe----CCCcEEEEECcchHH---HhhccCCcccccccc
Confidence 653 23221 223333 3 3332 3333322 447899999974442 333334331
Q ss_pred -cEEEEccCCEEEEEEcCceEEEEEE
Q 003356 546 -PIVMDVYEDYILVTYRPFDVHIFHV 570 (827)
Q Consensus 546 -~~~l~~~~~~llV~~~~~~i~l~~~ 570 (827)
...+...+|.+.. ....++.++.+
T Consensus 802 ~~~~~~~~G~~~~~-~~~~e~~~~~~ 826 (902)
T 2oaj_A 802 TESSVLRNGDIAIR-VSEFQASLFST 826 (902)
T ss_dssp TTCEECTTSCEEEE-CSSSEEEEEEE
T ss_pred cceEEcCCCCEEEE-eChhheEEEEE
Confidence 1334445565444 34557766664
No 17
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=1.2e-28 Score=300.35 Aligned_cols=273 Identities=13% Similarity=0.182 Sum_probs=206.2
Q ss_pred CceEEEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 003356 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (827)
Q Consensus 21 ~~~vv~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~ 99 (827)
....++|||||+++|+++ ++.|.||+.. .+..+..+.. +.+.+.+++|+|||++||+++.||.|++|++..+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~-~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYE-TQVEVRSIQV------TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEEC------CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECC-CCceEEEEec------CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 345689999999999885 6799999995 6655555431 3477899999999999999999999999998643
Q ss_pred CceeecCCCCCCCceeeeEeeEeecccccccccceEE--EeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCc
Q 003356 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (827)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~ 177 (827)
..... +.++...|. ++++++..+++++.||.+++|+++.......
T Consensus 88 ~~~~~-----------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~---------- 134 (814)
T 3mkq_A 88 EKVVD-----------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ---------- 134 (814)
T ss_dssp CEEEE-----------------------EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE----------
T ss_pred cEEEE-----------------------EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE----------
Confidence 31111 122333444 4567788899999999999987753311110
Q ss_pred ccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEe-CCcEEEEeeccCccccceeecccee---
Q 003356 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE--- 253 (827)
Q Consensus 178 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~~~~~~~~~~~~~~~~--- 253 (827)
.+..+...+.++. ++| ||+.+++++.++++++|+.......
T Consensus 135 -------------------------~~~~~~~~v~~~~----------~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 179 (814)
T 3mkq_A 135 -------------------------TFEGHEHFVMCVA----------FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179 (814)
T ss_dssp -------------------------EEECCSSCEEEEE----------EETTEEEEEEEEETTSEEEEEETTCSSCSEEE
T ss_pred -------------------------EEcCCCCcEEEEE----------EEcCCCCEEEEEeCCCeEEEEECCCCcceeEE
Confidence 1123344566655 566 7778888888888888987544322
Q ss_pred -cCCCCcEE-EEEcC--CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC
Q 003356 254 -LGSGDAVC-ASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (827)
Q Consensus 254 -~~h~~~v~-va~sp--~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg 329 (827)
..+...+. ++|+| +++++++|+.||+|++||+.+ +..+..+.+ |.+.|.+++|+|||.+|++|+.||
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg 250 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEG--------HMSNVSFAVFHPTLPIIISGSEDG 250 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-TEEEEEEEC--------CSSCEEEEEECSSSSEEEEEETTS
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-CcEEEEEcC--------CCCCEEEEEEcCCCCEEEEEeCCC
Confidence 33434454 99999 999999999999999999988 777888887 999999999999999999999999
Q ss_pred cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCcc--ceeecc--eeEEEccCC
Q 003356 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE--PLMSGT--SMMQWDEYG 382 (827)
Q Consensus 330 ~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~--~l~sg~--~i~~W~~~~ 382 (827)
.|++||+.+++...++..+ ...+.+++|+|++ . .++++. .+..|+...
T Consensus 251 ~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 251 TLKIWNSSTYKVEKTLNVG-LERSWCIATHPTG----RKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp CEEEEETTTCSEEEEECCS-SSSEEEEEECTTC----GGGEEEEEETTEEEEEECSC
T ss_pred eEEEEECCCCcEEEEeecC-CCcEEEEEEccCC----CceEEEEEeCCCEEEEEcCC
Confidence 9999999999999988877 5689999999997 4 244443 556666543
No 18
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.4e-28 Score=314.20 Aligned_cols=425 Identities=15% Similarity=0.115 Sum_probs=300.9
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEE--eecCCC
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNK 143 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d~~ 143 (827)
+.+.+.+++|||||++||+++.||+|++|++..+..... +.++...|.+ ++++++
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~-----------------------~~~h~~~v~~~~~s~~~~ 670 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-----------------------IKAHEDEVLCCAFSSDDS 670 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------------ECCCSSCEEEEEECTTSS
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-----------------------eccCCCCEEEEEEecCCC
Confidence 347789999999999999999999999999864432111 1233444544 467788
Q ss_pred eEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceE
Q 003356 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (827)
Q Consensus 144 ~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (827)
.+++++.||.|++|++... ... ..+..+...|.++.|++.
T Consensus 671 ~l~s~~~d~~v~vwd~~~~--~~~----------------------------------~~~~~~~~~v~~~~~~~~---- 710 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDSATG--KLV----------------------------------HTYDEHSEQVNCCHFTNK---- 710 (1249)
T ss_dssp EEEEEETTSEEEEEETTTC--CEE----------------------------------EEEECCSSCEEEEEECSS----
T ss_pred EEEEEeCCCeEEEEECCCC--ceE----------------------------------EEEcCCCCcEEEEEEecC----
Confidence 9999999999998665422 111 011234455666664432
Q ss_pred EEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
.++.++++++.++++++|+...++.. .+|...+. ++|+|+++++++|+.||+|++||+.+ +.....+....
T Consensus 711 ----~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~ 785 (1249)
T 3sfz_A 711 ----SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS-ANERKSINVKR 785 (1249)
T ss_dssp ----SSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGG-TEEEEEEECCC
T ss_pred ----CCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCC-Ccccceecccc
Confidence 14557888888999999998766543 68888887 99999999999999999999999988 66555554322
Q ss_pred CC-----CCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc-
Q 003356 300 WG-----YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (827)
Q Consensus 300 ~~-----~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~- 373 (827)
.. ....+...|.+++|+|||+.+++++. +.+.+|++.++.....+...+...+.+++|+|++ ..++++.
T Consensus 786 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~~~~~ 860 (1249)
T 3sfz_A 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD----HLAVIALS 860 (1249)
T ss_dssp CC--------CCCCCBCCCCBCTTSSEEEEEET-TEEEEEETTTCCEEEEEECSSSSCCCEEEECSST----TEEEEECS
T ss_pred cccccCCccccccceEEEEEECCCCCEEEEEcC-CcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC----CEEEEEeC
Confidence 11 11124557999999999999999984 8999999999888888775447789999999998 7777765
Q ss_pred --eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEc--------------------------
Q 003356 374 --SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYG-------------------------- 422 (827)
Q Consensus 374 --~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~-------------------------- 422 (827)
.+.+|+..+++......+|...|..+.+ ++.+++++.|+++++|++...
T Consensus 861 dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 940 (1249)
T 3sfz_A 861 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV 940 (1249)
T ss_dssp SSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEE
T ss_pred CCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEe
Confidence 8999999999999999999999966555 788999999999999984311
Q ss_pred -------------------------------CCeEEEEecCCCCcceEEE--eeeceeeccCCCcEEEEEEcCCCCEEEE
Q 003356 423 -------------------------------EDRLLVVQSEDTDELKILH--LNLPVSYISQNWPVQHVAASKDGMFLAV 469 (827)
Q Consensus 423 -------------------------------~~~~~~~~~~d~~~~~w~~--~~~p~~~~~~~~~I~~va~SpdG~~lav 469 (827)
+.+.++..+.+.....|.. .+....+.+|..+|++++|+|||+++++
T Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1020 (1249)
T 3sfz_A 941 DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020 (1249)
T ss_dssp ESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEE
T ss_pred cCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEE
Confidence 0111111222222233421 1223355689999999999999999999
Q ss_pred EeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEecCCccEE
Q 003356 470 AGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIV 548 (827)
Q Consensus 470 ag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~~~~~~ 548 (827)
++.||.+ +||+.+++...+. .....+..+.|..+..++++. .+..+++|..........+....-+-..+.
T Consensus 1021 ~~~dg~i~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~l~~~~----~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~ 1092 (1249)
T 3sfz_A 1021 SSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRLLQDSRLLSWS----FDGTVKVWNVITGRIERDFTCHQGTVLSCA 1092 (1249)
T ss_dssp ECSSSBEEEEETTTTEEECCB----CCSSCEEEEEECSSSEEEEEE----SSSEEEEEETTTTCCCEEEECCSSCCCCEE
T ss_pred EcCCCEEEEEECCCCceEEEe----cCCCcEEEEEEcCCCcEEEEE----CCCcEEEEECCCCceeEEEcccCCcEEEEE
Confidence 9999999 9999999866432 122246778887654433322 235799998752111111111111122356
Q ss_pred EEccCCEEEEEEcCceEEEEEEE
Q 003356 549 MDVYEDYILVTYRPFDVHIFHVK 571 (827)
Q Consensus 549 l~~~~~~llV~~~~~~i~l~~~~ 571 (827)
++..+..+++++.|+.+++|++.
T Consensus 1093 ~s~d~~~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1093 ISSDATKFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp ECSSSSSCEEECCSSCCCEECSS
T ss_pred ECCCCCEEEEEcCCCcEEEEECC
Confidence 66777888888889999999764
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=9.6e-29 Score=264.84 Aligned_cols=279 Identities=15% Similarity=0.144 Sum_probs=219.8
Q ss_pred cccccceEEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccC
Q 003356 128 FAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (827)
Q Consensus 128 ~~~~~~~v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~ 205 (827)
+.++...|.++ ++++..+++++.||.+++|+..... ... .+.
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~--~~~----------------------------------~~~ 52 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV--EVR----------------------------------SIQ 52 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEE----------------------------------EEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--eeE----------------------------------Eee
Confidence 44555566554 6778899999999999996554221 110 011
Q ss_pred CCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEE
Q 003356 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVE 281 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~ 281 (827)
.+...+.. +.+++||+.+++++.|+++++|+..+++.. .+|.+.+. ++|+|++++||+|+.||+|+
T Consensus 53 ~~~~~v~~----------~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~ 122 (304)
T 2ynn_A 53 VTETPVRA----------GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122 (304)
T ss_dssp CCSSCEEE----------EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred ccCCcEEE----------EEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEE
Confidence 22334544 448899999999999999999998776543 68999887 99999999999999999999
Q ss_pred EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecC
Q 003356 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (827)
Q Consensus 282 vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp 360 (827)
+||+.+.......+.+ |.+.|.+++|+| |+..||+|+.|++|++||+..+....++..++...+..+.++|
T Consensus 123 lWd~~~~~~~~~~~~~--------h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (304)
T 2ynn_A 123 LWNWENNWALEQTFEG--------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194 (304)
T ss_dssp EEEGGGTTEEEEEECC--------CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECC
T ss_pred EEECCCCcchhhhhcc--------cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEE
Confidence 9999873355566776 999999999999 7899999999999999999877766666555456788888887
Q ss_pred CCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEE--ec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCC
Q 003356 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (827)
Q Consensus 361 ~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~--~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~ 434 (827)
..+ ...+++|+ ++++|+..+++++..+.+|...|..+ ++ ++.+++++.|+++++|++..+..
T Consensus 195 ~~~--~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~---------- 262 (304)
T 2ynn_A 195 LPD--KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV---------- 262 (304)
T ss_dssp STT--CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE----------
T ss_pred cCC--CCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce----------
Confidence 431 15677776 89999999999999999999988554 44 77899999999999999644332
Q ss_pred CcceEEEeeeceeeccCCCcEEEEEEcCCCC--EEEEEeCCceEEEEcCC
Q 003356 435 DELKILHLNLPVSYISQNWPVQHVAASKDGM--FLAVAGLHGLILYDIRQ 482 (827)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~--~lavag~dg~iiwd~~t 482 (827)
..++..|..++.+++|+|+|. ++|+|+.||.++|++..
T Consensus 263 ----------~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 263 ----------EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp ----------EEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred ----------eeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 455667888999999999985 79999999988998754
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=2e-28 Score=264.54 Aligned_cols=273 Identities=12% Similarity=0.172 Sum_probs=216.8
Q ss_pred hcCcccEEEEcCC----ccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--e
Q 003356 66 REGENLQAVWSPD----TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--V 139 (827)
Q Consensus 66 ~~G~~~~v~wSPD----g~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~ 139 (827)
+.+.+.+++|+|+ +++||+++.||+|++|++..... .....+.++...|.++ .
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------------~~~~~l~gh~~~v~~~~~~ 89 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------------DLQWSLEGHQLGVVSVDIS 89 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCSSCEEEEEEC
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---------------------eeeeeeccCCCCEEEEEEC
Confidence 4588999999985 67999999999999999864321 0111134555566555 4
Q ss_pred cCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCC
Q 003356 140 SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (827)
Q Consensus 140 ~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 219 (827)
+++..+++++.|+.|++|+.... .... . +..+...+
T Consensus 90 ~~~~~l~s~s~D~~i~lWd~~~~--~~~~------------~----------------------~~~~~~~~-------- 125 (321)
T 3ow8_A 90 HTLPIAASSSLDAHIRLWDLENG--KQIK------------S----------------------IDAGPVDA-------- 125 (321)
T ss_dssp SSSSEEEEEETTSEEEEEETTTT--EEEE------------E----------------------EECCTTCC--------
T ss_pred CCCCEEEEEeCCCcEEEEECCCC--CEEE------------E----------------------EeCCCccE--------
Confidence 55678889999999998654321 1110 0 00111112
Q ss_pred cceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEE
Q 003356 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (827)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l 295 (827)
..+.++|||+.++++..++++++|+....+.. ..|...+. ++|+|++++||+|+.||+|++||+.+ ++.+..+
T Consensus 126 --~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~ 202 (321)
T 3ow8_A 126 --WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTL 202 (321)
T ss_dssp --CCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEE
T ss_pred --EEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEE
Confidence 22457899999999999999999998765443 46666666 99999999999999999999999988 7888888
Q ss_pred EeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--
Q 003356 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (827)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (827)
.+ |.++|.+++|+|||++||+|+.|++|++||+.++.+..++.+| ...|.+++|+|++ ..+++++
T Consensus 203 ~~--------h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~----~~l~s~s~D 269 (321)
T 3ow8_A 203 EG--------HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH-ASWVLNVAFCPDD----THFVSSSSD 269 (321)
T ss_dssp CC--------CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTS----SEEEEEETT
T ss_pred cc--------cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC-CCceEEEEECCCC----CEEEEEeCC
Confidence 87 9999999999999999999999999999999999999999888 6789999999998 8888886
Q ss_pred -eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEE
Q 003356 374 -SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 374 -~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~ 419 (827)
++++|+..+++++..+.+|...|..+.+ ++.+++++.|+++++|++
T Consensus 270 ~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 270 KSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 8999999999999999999999966665 778999999999999984
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-28 Score=272.34 Aligned_cols=338 Identities=13% Similarity=0.132 Sum_probs=241.2
Q ss_pred hcCcccEEEEcCCcc-EEEEEecCcEEEEEEE----EecCceeecCCCCCCCceeeeEeeEeecccc------cccccce
Q 003356 66 REGENLQAVWSPDTK-LIAVVTSSLYLHIFKV----QITEKSIQIGGKQPSGLFFIKISLVLNEQLP------FAEKGLS 134 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~-~lav~t~dg~l~l~~v----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~ 134 (827)
+.+.+.+++|+|||+ +||+++.||.|++|++ ..+.. +|.+......... ..++...
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK-------------YWKLTIIAELRHPFALSASSGKTTNQ 110 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC-------------------CEEEEEEEEEECCCCCC------CBC
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc-------------cccccccccccccccccccccCCCCc
Confidence 347889999999999 9999999999999999 54331 1111101011111 1123445
Q ss_pred EEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEE
Q 003356 135 VSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAII 212 (827)
Q Consensus 135 v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (827)
|.++ +++++.|++++.||.+++|+.++.. . ..+..+...|.
T Consensus 111 v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~---~----------------------------------~~~~~~~~~v~ 153 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGVENGELRLWNKTGAL---L----------------------------------NVLNFHRAPIV 153 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCE---E----------------------------------EEECCCCSCEE
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe---e----------------------------------eeccCCCccEE
Confidence 5554 6677899999999999986522111 1 01123445576
Q ss_pred EEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCc---------------EE-EEEcCCCCEEEE
Q 003356 213 WLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA---------------VC-ASIAPEQQILAV 273 (827)
Q Consensus 213 ~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~---------------v~-va~sp~~~lla~ 273 (827)
++. ++++|+.++++..++.+++|+....+.. ..+... +. ++|+|++ .+++
T Consensus 154 ~~~----------~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 222 (425)
T 1r5m_A 154 SVK----------WNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVI 222 (425)
T ss_dssp EEE----------ECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEE
T ss_pred EEE----------ECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEE
Confidence 666 5677888888888888888887655432 233332 44 8899885 5888
Q ss_pred EecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccce
Q 003356 274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (827)
Q Consensus 274 g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v 353 (827)
|+.||.|++||+.+ ++.+..+.. |.++|.+++|+|||++|++++.|+.|++|++..++....+..| ...+
T Consensus 223 ~~~~g~i~~~d~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i 292 (425)
T 1r5m_A 223 PGPKGAIFVYQITE-KTPTGKLIG--------HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-SQSI 292 (425)
T ss_dssp ECGGGCEEEEETTC-SSCSEEECC--------CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC-SSCE
T ss_pred EcCCCeEEEEEcCC-Cceeeeecc--------CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC-CccE
Confidence 99999999999988 777777777 9999999999999999999999999999999998888888877 6789
Q ss_pred eeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEE
Q 003356 354 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLL 427 (827)
Q Consensus 354 ~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~ 427 (827)
.+++|+|++ .++++. .+.+|+..+++.......|...+..+.+ ++.+++++.|+.+++|++..+.....
T Consensus 293 ~~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 367 (425)
T 1r5m_A 293 VSASWVGDD-----KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR 367 (425)
T ss_dssp EEEEEETTT-----EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---
T ss_pred EEEEECCCC-----EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcccee
Confidence 999999986 444443 8999999999999888888888855554 78899999999999999865542110
Q ss_pred EEecCCCCcceE--EEeeeceeeccCCC--cEEEEEEcCCCCEEEEEeCCceE-EEEcC
Q 003356 428 VVQSEDTDELKI--LHLNLPVSYISQNW--PVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (827)
Q Consensus 428 ~~~~~d~~~~~w--~~~~~p~~~~~~~~--~I~~va~SpdG~~lavag~dg~i-iwd~~ 481 (827)
...+. ....+ ...+....+.+|.. +|.+++|+|+|++||+|+.||.+ +||+.
T Consensus 368 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 368 SLYGN--RDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred eeecc--cccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 00000 00011 11123445667766 99999999999999999999999 99975
No 22
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=4.5e-29 Score=276.40 Aligned_cols=295 Identities=14% Similarity=0.153 Sum_probs=208.9
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeE
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~l 145 (827)
+.+.+.+++|+|||++||+++.||+|++||+..+........+ .....-.+++++++.+
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h---------------------~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH---------------------CPWVMECAFAPNGQSV 123 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECC---------------------CTTCCCCEECTTSSEE
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecC---------------------CCCEEEEEECCCCCEE
Confidence 3488999999999999999999999999997543211111100 0111223667889999
Q ss_pred EEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEE
Q 003356 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (827)
Q Consensus 146 lv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (827)
++++.|+.+++|+........... .....+..+...+.++.
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~-----------------------------~~~~~~~gh~~~v~~~~---------- 164 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNM-----------------------------PVSRVLTGHKGYASSCQ---------- 164 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSS-----------------------------TTCCBCCCCSSCCCCCB----------
T ss_pred EEeeCCCcEEEEECCCCccccCCc-----------------------------cceeeccCCCcceEEEE----------
Confidence 999999999997765332111000 00011223344444433
Q ss_pred EEeC-CcEEEEeeccCccccceeecccee--------cCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCCcceEE
Q 003356 226 LYSN-GQLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRT 294 (827)
Q Consensus 226 ~s~d-G~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~~~~~~ 294 (827)
+.|+ +..+++++.|+++++|+..+++.. .+|...+. +++++ ++.++++|+.||+|++||+......++.
T Consensus 165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~ 244 (380)
T 3iz6_a 165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT 244 (380)
T ss_dssp CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 3444 456788888999999998766543 46777776 99987 8999999999999999999864577778
Q ss_pred EEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecccccc------ceeeeeecCCCCCCccc
Q 003356 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS------SISSPIVKPNQDCKYEP 368 (827)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~------~v~s~~~sp~~~~~~~~ 368 (827)
+.+ |.+.|.+++|+|||++|++|+.|++|++||+.++..+..+..+... .+.+++|+|+
T Consensus 245 ~~~--------h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------- 309 (380)
T 3iz6_a 245 YHG--------HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS------- 309 (380)
T ss_dssp ECC--------CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS-------
T ss_pred ECC--------cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC-------
Confidence 887 9999999999999999999999999999999999888776543110 1233333333
Q ss_pred eeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceee
Q 003356 369 LMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (827)
Q Consensus 369 l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~ 448 (827)
++.+++|+.|+.+++|+...++.. ..+....
T Consensus 310 ---------------------------------g~~l~~g~~dg~i~vwd~~~~~~~----------------~~~~~~~ 340 (380)
T 3iz6_a 310 ---------------------------------GRLLFAGYSNGDCYVWDTLLAEMV----------------LNLGTLQ 340 (380)
T ss_dssp ---------------------------------SSEEEEECTTSCEEEEETTTCCEE----------------EEECCSC
T ss_pred ---------------------------------CCEEEEEECCCCEEEEECCCCceE----------------EEEeccc
Confidence 445667777778888875333220 0011122
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 449 ~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
.+|..+|.+++|||||++||+|+.||.+ +|++..++
T Consensus 341 ~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 341 NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 5789999999999999999999999999 99997654
No 23
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=4.8e-28 Score=284.59 Aligned_cols=396 Identities=9% Similarity=0.090 Sum_probs=263.2
Q ss_pred ceEEEEEe--cceEEEEE-ccCeEEEeecCCce--------eEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecC--
Q 003356 22 QQIIYFKV--NNGLLLIA-SPCHIELWSSSQHK--------VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS-- 88 (827)
Q Consensus 22 ~~vv~fsp--dg~lla~~-~~~~v~IW~~~~~~--------~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~d-- 88 (827)
...++|+| ||++||++ .+++|+||+.. .+ ..+..+. .+.+.+.+++|+|||++|++++.+
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~~~~ 139 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWT-FDKESNSVEVNVKSEFQ------VLAGPISDISWDFEGRRLCVVGEGRD 139 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEE-EEGGGTEEEEEEEEEEE------CCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCC-CCcccccccccccchhh------cccccEEEEEEeCCCCEEEEeccCCC
Confidence 34589999 99999998 47799999993 22 2222221 134778999999999999999988
Q ss_pred --cEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecCCC-eEEEEecCCcEEEEecCCcc
Q 003356 89 --LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNK-HMLLGLSDGSLYSISWKGEF 163 (827)
Q Consensus 89 --g~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~-~llv~t~dg~i~~~~w~~~~ 163 (827)
+.|++|+. +..... +.++...|.++ .+++. .+++++.||.+++|+.....
T Consensus 140 ~~~~v~~~d~--~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~ 194 (615)
T 1pgu_A 140 NFGVFISWDS--GNSLGE-----------------------VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 194 (615)
T ss_dssp CSEEEEETTT--CCEEEE-----------------------CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred CccEEEEEEC--CCccee-----------------------eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc
Confidence 78999982 211000 12233344444 55555 68889999999986544322
Q ss_pred CcceeecccCCCCc---ccceecccCC-CCccccccCCceeccccCCCcccEEEE-E---EcCCcceEEEEEeCCcEEEE
Q 003356 164 YGAFELVHSSNDSS---VAALSHHFPS-NGLASVDTSGAFVSDHKFPISSAIIWL-E---LCLPMRLLFVLYSNGQLMSC 235 (827)
Q Consensus 164 ~~~~~l~~~p~~~~---~i~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~i~~i-~---~~~~~~~~~~~s~dG~~~~~ 235 (827)
.. . ....+.. .+..+.++++ +........+.....+.......+..+ . .+...-..+.++ +|+.+++
T Consensus 195 ~~-~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 269 (615)
T 1pgu_A 195 FS-A---SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFAT 269 (615)
T ss_dssp EE-E---EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred ee-e---eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEE
Confidence 11 1 1122333 5677777777 654333332333334433333344433 1 122222345566 9999999
Q ss_pred eeccCccccceeecccee---cCC----CCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCC------
Q 003356 236 SVSKKGLKLAEFIKIDKE---LGS----GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG------ 301 (827)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~---~~h----~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~------ 301 (827)
+..++.+++|+....+.. ..+ ...+. +.++ +++++++|+.||.|++||+.+ ++.+..+.++.-.
T Consensus 270 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 270 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH-DEVLKTISGHNKGITALTV 347 (615)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE-EEEEEEECCCSSCEEEEET
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC-CcEEEEEeCCCCCEEEEEe
Confidence 999999999998765443 233 23444 6665 899999999999999999986 5555444431100
Q ss_pred ----------------C---CCCCCCCeEEEEECCC--------------------------------------------
Q 003356 302 ----------------Y---SMDDTGPVSCIAWTPD-------------------------------------------- 318 (827)
Q Consensus 302 ----------------~---~~~h~~~V~~l~~spD-------------------------------------------- 318 (827)
. ..+|.++|.+++| ++
T Consensus 348 ~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 426 (615)
T 1pgu_A 348 NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND 426 (615)
T ss_dssp TTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETT
T ss_pred cCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCC
Confidence 0 0124444444444 22
Q ss_pred -----------------------------CCEEEEEEc-CCcEEEEeccCCeeE-EEeccccccceeeeeecCCCCCCcc
Q 003356 319 -----------------------------NSAFAVGWK-SRGLTVWSVSGCRLM-STIRQISLSSISSPIVKPNQDCKYE 367 (827)
Q Consensus 319 -----------------------------g~~Lasg~~-Dg~v~vWs~~~~~l~-~tl~~~~~~~v~s~~~sp~~~~~~~ 367 (827)
|++|++|+. |+.|++|++.++.+. ..+.+| ...+.+++|+|++ .
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g----~ 501 (615)
T 1pgu_A 427 DDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL-RAKPSYISISPSE----T 501 (615)
T ss_dssp SEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCC-SSCEEEEEECTTS----S
T ss_pred CceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCc-cCceEEEEECCCC----C
Confidence 444455555 555556655554443 344444 5689999999999 8
Q ss_pred ceeecc---eeEEEccCCceEEEEecC-CcceEEEEec-------------ceeeeecccCCCeeeeEEEEcCCeEEEEe
Q 003356 368 PLMSGT---SMMQWDEYGYRLYAIEEG-SSERVLIFSF-------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (827)
Q Consensus 368 ~l~sg~---~i~~W~~~~~~l~~~~~~-~~~~v~~~~~-------------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~ 430 (827)
.++++. .+.+|+..+++++....+ |...|..+.+ ++.+++++.|+++++|++..+...
T Consensus 502 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----- 576 (615)
T 1pgu_A 502 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI----- 576 (615)
T ss_dssp EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC-----
T ss_pred EEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCcee-----
Confidence 888876 899999999999888877 8888855444 568899999999999998665331
Q ss_pred cCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 431 ~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
...+.+|..+|.+++|+|||+ |++++.||.+ +|++.+
T Consensus 577 --------------~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 577 --------------IKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp --------------EEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred --------------chhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 455778999999999999999 9999999999 999875
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.9e-28 Score=263.40 Aligned_cols=285 Identities=14% Similarity=0.156 Sum_probs=208.2
Q ss_pred cccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCC
Q 003356 128 FAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (827)
Q Consensus 128 ~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 207 (827)
+.++...|.++..+++.|++++.||.|++|+.......... . .....+
T Consensus 10 ~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~------------~--------------------~~~~~h 57 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLID------------V--------------------LDETAH 57 (330)
T ss_dssp EECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEE------------E--------------------ECTTCC
T ss_pred eccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEE------------E--------------------EecCCc
Confidence 45677788888887888999999999999765432111000 0 001124
Q ss_pred cccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecc----------ceecCCCCcEE-EEEcCCCCEEEEEec
Q 003356 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI----------DKELGSGDAVC-ASIAPEQQILAVGTR 276 (827)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~----------~~~~~h~~~v~-va~sp~~~lla~g~~ 276 (827)
...|.++. ++|+|+++++++.|+++++|+.... ..+.+|...+. ++|+|++++||+|+.
T Consensus 58 ~~~v~~v~----------~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~ 127 (330)
T 2hes_X 58 KKAIRSVA----------WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR 127 (330)
T ss_dssp CSCEEEEE----------ECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred cCCEEEEE----------ECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 55677666 6778889999999999999987421 12368998887 999999999999999
Q ss_pred CCeEEEEEcCCCC---cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC--eeEEEecccccc
Q 003356 277 RGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLS 351 (827)
Q Consensus 277 dg~v~vw~~~~~~---~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~--~l~~tl~~~~~~ 351 (827)
|++|++||+...+ +.+..+.+ |.+.|.+++|+|||.+||+|+.|++|++|+..++ +++.++.+| ..
T Consensus 128 D~~v~iwd~~~~~~~~~~~~~~~~--------h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~ 198 (330)
T 2hes_X 128 DKSVWIWETDESGEEYECISVLQE--------HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EG 198 (330)
T ss_dssp TSCEEEEECCTTCCCCEEEEEECC--------CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SS
T ss_pred CCEEEEEeccCCCCCeEEEEEecc--------CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CC
Confidence 9999999995422 34456666 9999999999999999999999999999999776 577888888 67
Q ss_pred ceeeeeecCCCCCCccceeecc---eeEEEccCCc--------eEEEEecC-CcceEEEEec--ceeeeecccCCCeeee
Q 003356 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--------RLYAIEEG-SSERVLIFSF--GKCCLNRGVSGMTYAR 417 (827)
Q Consensus 352 ~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~--------~l~~~~~~-~~~~v~~~~~--~~~~~s~~~d~~~~~w 417 (827)
.|.+++|+|++. ...+++|+ ++++|+..+. .+.....+ |...|..+.+ ...+++++.|+++++|
T Consensus 199 ~v~~~~~~~~~~--~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw 276 (330)
T 2hes_X 199 TVWSSDFDKTEG--VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVY 276 (330)
T ss_dssp CEEEEEECCSSS--SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEE
T ss_pred cEEEEEecCCCC--eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEE
Confidence 899999999831 15677776 8999998654 34444444 7788866655 6689999999999999
Q ss_pred EEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCC-cEEEEEEcC--CCCEEEEEeCCceE-EEEcCC
Q 003356 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-PVQHVAASK--DGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 418 ~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~-~I~~va~Sp--dG~~lavag~dg~i-iwd~~t 482 (827)
+...+..+. +.....+|.. .|.+++|+| +|++||+|+.||.+ +||+++
T Consensus 277 ~~~~~~~~~-----------------~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 277 EEVDGEWKV-----------------FAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEETTEEEE-----------------EEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EcCCCceEE-----------------EeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 975432111 0122346776 899999999 79999999999999 999864
No 25
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=7.3e-29 Score=277.62 Aligned_cols=330 Identities=14% Similarity=0.118 Sum_probs=241.9
Q ss_pred cccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEE
Q 003356 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (827)
Q Consensus 69 ~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~ 148 (827)
..+.++|+|||++||+++.||.+++|++......... .......+.++.++++.++++
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML----------------------KRADYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS----------------------CSCCEEEEEEECSSSCEEEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE----------------------ecCCceEEEEEecCCCEEEEE
Confidence 3457999999999999999999999998643211000 011122334567788999999
Q ss_pred ecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEe
Q 003356 149 LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS 228 (827)
Q Consensus 149 t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~ 228 (827)
+.||.+++|+.. ..... ..+..+...|.+++ ++|
T Consensus 116 ~~dg~i~iwd~~--~~~~~----------------------------------~~~~~h~~~v~~~~----------~~~ 149 (420)
T 3vl1_A 116 TTEGDIKVLDSN--FNLQR----------------------------------EIDQAHVSEITKLK----------FFP 149 (420)
T ss_dssp ETTSCEEEECTT--SCEEE----------------------------------EETTSSSSCEEEEE----------ECT
T ss_pred ECCCCEEEEeCC--Cccee----------------------------------eecccccCccEEEE----------ECC
Confidence 999999986543 21111 11234556677766 667
Q ss_pred CCcEEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCC---
Q 003356 229 NGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG--- 301 (827)
Q Consensus 229 dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~--- 301 (827)
||+.+++++.|+++++|+....+. +.+|...+. ++|+|++++|++|+.||+|++||+.+ ++.+..+......
T Consensus 150 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~ 228 (420)
T 3vl1_A 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFNRKENPHDG 228 (420)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECBTTBTTCC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC-CceeEEeecCCCCCCC
Confidence 888888888899999999876543 367888887 99999999999999999999999988 6777666542100
Q ss_pred -------------CCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCcc-
Q 003356 302 -------------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE- 367 (827)
Q Consensus 302 -------------~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~- 367 (827)
....|..+|.+++|+|||++|++|+.||.|++||+.+++....+...+...+.+++|+|++ .
T Consensus 229 v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~ 304 (420)
T 3vl1_A 229 VNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN----AN 304 (420)
T ss_dssp EEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC----TT
T ss_pred ccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC----CC
Confidence 0001345566677799999999999999999999999888777766447789999999998 6
Q ss_pred ceeecc---eeEEEccCCce-EEEEecC-CcceEEEEec--ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEE
Q 003356 368 PLMSGT---SMMQWDEYGYR-LYAIEEG-SSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (827)
Q Consensus 368 ~l~sg~---~i~~W~~~~~~-l~~~~~~-~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~ 440 (827)
.+++|. .+.+|+..+++ .+..+.. +...+..+.+ ++.+++++.|+++++|++........+ .
T Consensus 305 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-----------~ 373 (420)
T 3vl1_A 305 YIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPA-----------I 373 (420)
T ss_dssp EEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCE-----------E
T ss_pred EEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccc-----------e
Confidence 777776 89999998764 3444444 5555644333 889999999999999998764331000 0
Q ss_pred EeeeceeeccCCCcEEEEEEcCCCC---EEEEEeCCceE-EEEcCC
Q 003356 441 HLNLPVSYISQNWPVQHVAASKDGM---FLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 441 ~~~~p~~~~~~~~~I~~va~SpdG~---~lavag~dg~i-iwd~~t 482 (827)
....+..+.+|...|.+++|+|||+ .++++|.+|.+ +|+++.
T Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 374 EFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred eccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 0112445678889999999999999 77788888989 999854
No 26
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-29 Score=281.49 Aligned_cols=345 Identities=12% Similarity=0.109 Sum_probs=244.4
Q ss_pred cCcccEEEEcCCcc-EEEEE----------ecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceE
Q 003356 67 EGENLQAVWSPDTK-LIAVV----------TSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV 135 (827)
Q Consensus 67 ~G~~~~v~wSPDg~-~lav~----------t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 135 (827)
...+.+++|||||+ +||++ +.||.|++|++......... . ...+...|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~----------~-----------~~~~~~~v 70 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI----------A-----------SLQVDSKF 70 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS----------C-----------CCCCSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE----------E-----------EEecCCce
Confidence 34567899999998 99999 78999999998754321000 0 00112234
Q ss_pred E--EeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEE
Q 003356 136 S--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (827)
Q Consensus 136 ~--~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (827)
. ++++++..|++++.||.+++|+.+........ + ..+..+...|.+
T Consensus 71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~----------~----------------------~~~~~h~~~v~~ 118 (416)
T 2pm9_A 71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINS----------M----------------------ARFSNHSSSVKT 118 (416)
T ss_dssp EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCE----------E----------------------EECCCSSSCCCE
T ss_pred EEEEECCCCCeEEEEccCCeEEEeecccccccccc----------h----------------------hhccCCccceEE
Confidence 3 44677889999999999999665532111100 0 112234445655
Q ss_pred EEEcCCcceEEEEEeC-CcEEEEeeccCccccceeeccc------ee------cCCCCcEE-EEEcCC-CCEEEEEecCC
Q 003356 214 LELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKID------KE------LGSGDAVC-ASIAPE-QQILAVGTRRG 278 (827)
Q Consensus 214 i~~~~~~~~~~~~s~d-G~~~~~~~~~~~~~~~~~~~~~------~~------~~h~~~v~-va~sp~-~~lla~g~~dg 278 (827)
+. ++++ ++++++++.++++++|+....+ .. .+|...+. ++|+|+ +.++++|+.||
T Consensus 119 ~~----------~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 188 (416)
T 2pm9_A 119 VK----------FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188 (416)
T ss_dssp EE----------ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS
T ss_pred EE----------EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC
Confidence 55 5666 7888888888999999987654 11 35777776 999999 79999999999
Q ss_pred eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCC-CEEEEEEcCC---cEEEEeccCC-eeEEEec-cccccc
Q 003356 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSR---GLTVWSVSGC-RLMSTIR-QISLSS 352 (827)
Q Consensus 279 ~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg-~~Lasg~~Dg---~v~vWs~~~~-~l~~tl~-~~~~~~ 352 (827)
+|++||+.+ ++.+..+.... ...+|...|.+++|+|+| ++|++++.|+ .|++||+.++ .....+. +| ...
T Consensus 189 ~v~iwd~~~-~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~-~~~ 264 (416)
T 2pm9_A 189 FASIWDLKA-KKEVIHLSYTS--PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH-QKG 264 (416)
T ss_dssp CEEEEETTT-TEEEEEECCCC--CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC-SSC
T ss_pred CEEEEECCC-CCcceEEeccc--cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc-cCc
Confidence 999999988 67666665511 111238899999999997 6999999998 9999999875 5667776 66 678
Q ss_pred eeeeeecC-CCCCCccceeecc---eeEEEccCCceEEEEecCCcceE--EEEec-c-eeeeecccCCCeeeeEEEEcCC
Q 003356 353 ISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-G-KCCLNRGVSGMTYARQVIYGED 424 (827)
Q Consensus 353 v~s~~~sp-~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~-~~~~s~~~d~~~~~w~~~~~~~ 424 (827)
+.+++|+| ++ ..++++. .+.+|+..+++.+..+.+|...+ .+|++ + +.+++++.|+.+++|++.....
T Consensus 265 v~~~~~s~~~~----~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 265 ILSLDWCHQDE----HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp EEEEEECSSCS----SCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred eeEEEeCCCCC----CeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 99999999 76 7777776 89999999999999988888888 45555 4 7899999999999999865543
Q ss_pred eEEEE----ecCCCCcceEEEe------------eeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCC
Q 003356 425 RLLVV----QSEDTDELKILHL------------NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 425 ~~~~~----~~~d~~~~~w~~~------------~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~ 483 (827)
..... .....+...|.+. .+ .....|..++.+++|||||++||+|+.||.+ +|++.+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 341 TLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 11000 0000001111110 01 1112366788899999999999999999999 9999874
No 27
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=2.1e-28 Score=273.94 Aligned_cols=270 Identities=13% Similarity=0.177 Sum_probs=222.3
Q ss_pred cCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecCCCe
Q 003356 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKH 144 (827)
Q Consensus 67 ~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~~ 144 (827)
.+.+.+++|+||+++||+++.||+|++||+..+.... .+.++...|.++ .++++.
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~-----------------------~l~~h~~~V~~v~~~~~~~~ 164 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-----------------------TLKGHTDSVQDISFDHSGKL 164 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE-----------------------EECCCSSCEEEEEECTTSSE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-----------------------EEeccCCcEEEEEEcCCCCE
Confidence 4778999999999999999999999999986443111 123344455544 567788
Q ss_pred EEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEE
Q 003356 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (827)
Q Consensus 145 llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (827)
+++|+.||.|++|+.... ... ..+..+...|.++.
T Consensus 165 l~sgs~D~~i~iwd~~~~--~~~----------------------------------~~~~~h~~~V~~v~--------- 199 (410)
T 1vyh_C 165 LASCSADMTIKLWDFQGF--ECI----------------------------------RTMHGHDHNVSSVS--------- 199 (410)
T ss_dssp EEEEETTSCCCEEETTSS--CEE----------------------------------ECCCCCSSCEEEEE---------
T ss_pred EEEEeCCCeEEEEeCCCC--cee----------------------------------EEEcCCCCCEEEEE---------
Confidence 999999999998655421 111 11233445576665
Q ss_pred EEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecC
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~ 300 (827)
++|+|+.+++++.|+++++|+...+... .+|...+. ++++|++++|++|+.||+|++||+.+ +.....+..
T Consensus 200 -~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~--- 274 (410)
T 1vyh_C 200 -IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELRE--- 274 (410)
T ss_dssp -ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECC---
T ss_pred -EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC-CceeeEecC---
Confidence 6788999999999999999998776543 68888888 99999999999999999999999988 777777777
Q ss_pred CCCCCCCCCeEEEEECCC--------------------CCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecC
Q 003356 301 GYSMDDTGPVSCIAWTPD--------------------NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (827)
Q Consensus 301 ~~~~~h~~~V~~l~~spD--------------------g~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp 360 (827)
|...|.+++|+|+ |.+|++|+.|++|++||+.++.++.++.+| ...|.+++|+|
T Consensus 275 -----h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~ 348 (410)
T 1vyh_C 275 -----HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHS 348 (410)
T ss_dssp -----CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECS
T ss_pred -----CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC-CCcEEEEEEcC
Confidence 9999999999997 679999999999999999999999999988 67899999999
Q ss_pred CCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEE
Q 003356 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 361 ~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~ 419 (827)
++ ..+++|+ ++++|+..+++++..+.+|...|.++.+ ++.+++++.|+++++|++
T Consensus 349 ~g----~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 349 GG----KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SS----SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CC----CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 98 8888886 8999999999998889999999976666 678999999999999985
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=3.1e-28 Score=265.64 Aligned_cols=276 Identities=15% Similarity=0.148 Sum_probs=197.2
Q ss_pred eEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeCh---------HhhhhcCcccEEEEcCCccEEEEEecCcEEEE
Q 003356 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDS---------ESVQREGENLQAVWSPDTKLIAVVTSSLYLHI 93 (827)
Q Consensus 23 ~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~---------~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l 93 (827)
..++|||||++++++++.++++|+.. +..+.... ......+.+.+++|+||+ .|++++.||+|++
T Consensus 34 ~~~~fs~dG~~l~~~sd~~~r~Wd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~l 107 (344)
T 4gqb_B 34 EAARYRSDGALLLGASSLSGRCWAGS-----LWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVEL 107 (344)
T ss_dssp EEEEECTTSCEEEEEECCSSSCCCEE-----EEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred EEEEECCCCCEEEEEeCCceEEeece-----eeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEE
Confidence 44899999999999999899999852 11111100 011123568899999996 6789999999999
Q ss_pred EEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecc
Q 003356 94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVH 171 (827)
Q Consensus 94 ~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~ 171 (827)
||+..+.... .. .....++...|.++ +++++.|++|+.||.|++|+... ....
T Consensus 108 Wd~~~~~~~~-------------~~------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~--~~~~---- 162 (344)
T 4gqb_B 108 WELDENETLI-------------VS------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ--QVVL---- 162 (344)
T ss_dssp EEECTTSSCE-------------EE------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEE----
T ss_pred EeccCCCcee-------------Ee------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcEE----
Confidence 9997544211 00 01123445556554 67888999999999999865542 1111
Q ss_pred cCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCc-EEEEeeccCccccceeecc
Q 003356 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKI 250 (827)
Q Consensus 172 ~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~~~~~~~~~~~~~ 250 (827)
..+..+...|.++. ++++|+ ++++++.|+++++||...+
T Consensus 163 ------------------------------~~~~~h~~~V~~~~----------~~~~~~~~l~s~s~D~~v~iwd~~~~ 202 (344)
T 4gqb_B 163 ------------------------------SSYRAHAAQVTCVA----------ASPHKDSVFLSCSEDNRILLWDTRCP 202 (344)
T ss_dssp ------------------------------EEECCCSSCEEEEE----------ECSSCTTEEEEEETTSCEEEEETTSS
T ss_pred ------------------------------EEEcCcCCceEEEE----------ecCCCCCceeeecccccccccccccc
Confidence 11234455676665 666764 6778888999999998766
Q ss_pred cee-----cCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCC-CEE
Q 003356 251 DKE-----LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAF 322 (827)
Q Consensus 251 ~~~-----~~h~~~v~-va~sp~-~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg-~~L 322 (827)
+.. ..|...+. ++|+|+ ++++|+|+.||+|++||+.+ ++.++++.+ |.+.|++++|+||| ++|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~~~~~~~~~--------h~~~v~~v~fsp~g~~~l 273 (344)
T 4gqb_B 203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-TSCVLSSAV--------HSQCVTGLVFSPHSVPFL 273 (344)
T ss_dssp SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEEC--------CSSCEEEEEECSSSSCCE
T ss_pred ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-CcEEEEEcC--------CCCCEEEEEEccCCCeEE
Confidence 543 23444454 999985 67999999999999999998 888888988 99999999999998 589
Q ss_pred EEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccc-eeecc---eeEEEccCCce
Q 003356 323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP-LMSGT---SMMQWDEYGYR 384 (827)
Q Consensus 323 asg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~-l~sg~---~i~~W~~~~~~ 384 (827)
|+|+.|++|+|||+.+++++ .+.+| .+.|++++|+|++ .. +++++ ++++|+..+..
T Consensus 274 asgs~D~~i~vwd~~~~~~~-~~~~H-~~~V~~v~~sp~~----~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 274 ASLSEDCSLAVLDSSLSELF-RSQAH-RDFVRDATWSPLN----HSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEEETTSCEEEECTTCCEEE-EECCC-SSCEEEEEECSSS----TTEEEEEETTSCEEEEECCC--
T ss_pred EEEeCCCeEEEEECCCCcEE-EEcCC-CCCEEEEEEeCCC----CeEEEEEcCCCeEEEEECCCCC
Confidence 99999999999999998765 45677 6789999999987 44 44554 67777765543
No 29
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=1.9e-27 Score=257.52 Aligned_cols=290 Identities=19% Similarity=0.197 Sum_probs=210.4
Q ss_pred hcCcccEEEEcCC-ccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEE--eecCC
Q 003356 66 REGENLQAVWSPD-TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDN 142 (827)
Q Consensus 66 ~~G~~~~v~wSPD-g~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d~ 142 (827)
+.|.+++|+|+|| +++||+++.||+|++|++........ .+. ..+.++...|.+ +++++
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------~~~----------~~l~~h~~~V~~~~~s~dg 98 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------IPQ----------RALRGHSHFVSDVVISSDG 98 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------EEE----------EEECCCSSCEEEEEECTTS
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------eee----------EEEeCCCCCEEEEEECCCC
Confidence 4588999999998 68999999999999999975432100 000 112344445544 46778
Q ss_pred CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcce
Q 003356 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (827)
Q Consensus 143 ~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (827)
..+++++.||.++.+.......... .......+..
T Consensus 99 ~~l~s~~~d~~i~~~~~~~~~~~~~------------------------------------~~~~~~~~~~--------- 133 (340)
T 4aow_A 99 QFALSGSWDGTLRLWDLTTGTTTRR------------------------------------FVGHTKDVLS--------- 133 (340)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEE------------------------------------EECCSSCEEE---------
T ss_pred CEEEEEcccccceEEeecccceeee------------------------------------ecCCCCceeE---------
Confidence 8999999999998865443221110 0111112222
Q ss_pred EEEEEeCCcEEEEeeccCccccceeecccee----cCCCCcEE-EEEcCC--CCEEEEEecCCeEEEEEcCCCCcceEEE
Q 003356 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPE--QQILAVGTRRGVVELYDLAESASLIRTV 295 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~-va~sp~--~~lla~g~~dg~v~vw~~~~~~~~~~~l 295 (827)
..+.++++.+++++.|+.+++|+....... .+|...+. ++|+++ ..++++|+.|++|++||+.+ .+....+
T Consensus 134 -~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~ 211 (340)
T 4aow_A 134 -VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNH 211 (340)
T ss_dssp -EEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEE
T ss_pred -EEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEe
Confidence 346677888888888888888987544322 56788777 888876 46889999999999999988 7777777
Q ss_pred EeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--
Q 003356 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (827)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (827)
.+ |.++|++++|+|||++||+|+.||.|++||+.+.+.+..+..+ ..+.++.|+|++ ..++.+.
T Consensus 212 ~~--------h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~----~~~~~~~d~ 277 (340)
T 4aow_A 212 IG--------HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNR----YWLCAATGP 277 (340)
T ss_dssp CC--------CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSS----SEEEEEETT
T ss_pred cC--------CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCC----ceeeccCCC
Confidence 77 9999999999999999999999999999999999988888765 468888888876 4444332
Q ss_pred eeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCC
Q 003356 374 SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (827)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~ 453 (827)
.+++|+..+..+........ ......+|..
T Consensus 278 ~i~iwd~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~h~~ 307 (340)
T 4aow_A 278 SIKIWDLEGKIIVDELKQEV--------------------------------------------------ISTSSKAEPP 307 (340)
T ss_dssp EEEEEETTTTEEEEEECCC---------------------------------------------------------CCCC
T ss_pred EEEEEECCCCeEEEeccccc--------------------------------------------------eeeeccCCCC
Confidence 67778777665544332110 0223446788
Q ss_pred cEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 454 ~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
+|.+++|+|||++||+|+.||.+ +||++||.
T Consensus 308 ~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 308 QCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999999999 99999884
No 30
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.96 E-value=8.4e-28 Score=261.83 Aligned_cols=273 Identities=13% Similarity=0.160 Sum_probs=205.1
Q ss_pred eEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 003356 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (827)
Q Consensus 23 ~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~ 101 (827)
..++|+|||++|+++ .|++|+||+.. .+..+..+.. +.+.+.+++|+|||++||+++.||.+++|++.....
T Consensus 59 ~~~~~s~d~~~l~s~s~Dg~v~iWd~~-~~~~~~~~~~------~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 59 YAMHWGTDSRLLLSASQDGKLIIWDSY-TTNKVHAIPL------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp EEEEECTTSSEEEEEETTTEEEEEETT-TCCEEEEEEC------SSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECC-CCCcceEeec------CCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence 448899999999998 57899999984 5555554431 235678999999999999999999999999853321
Q ss_pred eeecCCCCCCCceeeeEeeEeecccccccccceEEEeec-CCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccc
Q 003356 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (827)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~ 180 (827)
.. .....+.++...|.++.. ++..+++++.||.+++|+.. .....
T Consensus 132 ~~-------------------~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~--~~~~~------------- 177 (340)
T 1got_B 132 NV-------------------RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE--TGQQT------------- 177 (340)
T ss_dssp SC-------------------EEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETT--TTEEE-------------
T ss_pred cc-------------------eeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECC--CCcEE-------------
Confidence 00 000112344455655533 23568899999999985543 22111
Q ss_pred eecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce---ecCCC
Q 003356 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSG 257 (827)
Q Consensus 181 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~ 257 (827)
..+..+...|.++. ++|+|+++++++.|+++++|+...... +.+|.
T Consensus 178 ---------------------~~~~~h~~~v~~~~----------~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~ 226 (340)
T 1got_B 178 ---------------------TTFTGHTGDVMSLS----------LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226 (340)
T ss_dssp ---------------------EEECCCSSCEEEEE----------ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred ---------------------EEEcCCCCceEEEE----------ECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc
Confidence 01223444566655 778899999999999999999876543 36788
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 258 ~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
..+. ++|+|++++||+|+.||+|++||+.. .+.+..+.. ..+...|.+++|+|||++|++|+.|+.|++||+
T Consensus 227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~------~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 227 SDINAICFFPNGNAFATGSDDATCRLFDLRA-DQELMTYSH------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC------TTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEcc------CCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence 8887 99999999999999999999999987 555554432 124568999999999999999999999999999
Q ss_pred cCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEc
Q 003356 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (827)
Q Consensus 337 ~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~ 379 (827)
..+....++.+| ...|.+++|+|++ ..+++|+ ++++|+
T Consensus 300 ~~~~~~~~~~~h-~~~v~~~~~s~dg----~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 300 LKADRAGVLAGH-DNRVSCLGVTDDG----MAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTCCEEEEEECC-SSCEEEEEECTTS----SCEEEEETTSCEEEEC
T ss_pred ccCcEeeEeecC-CCcEEEEEEcCCC----CEEEEEcCCccEEecC
Confidence 999999999888 6789999999998 6666665 566664
No 31
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=1.8e-27 Score=264.70 Aligned_cols=224 Identities=16% Similarity=0.200 Sum_probs=186.3
Q ss_pred EEEEeCCcEEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
+.+++||+.+++++.|+++++|+....+. +.+|...+. ++|+|++++|++|+.|++|++||+.+ ++....+.
T Consensus 129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~--- 204 (393)
T 1erj_A 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTLS--- 204 (393)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE---
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-CeeEEEEE---
Confidence 33788999999999999999999876644 378998887 99999999999999999999999988 66665554
Q ss_pred CCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEe-------ccccccceeeeeecCCCCCCccceee
Q 003356 300 WGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTI-------RQISLSSISSPIVKPNQDCKYEPLMS 371 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl-------~~~~~~~v~s~~~sp~~~~~~~~l~s 371 (827)
+...|.+++|+| ||++||+|+.|++|++||+.++.++..+ .+| ...|.+++|+|++ ..+++
T Consensus 205 ------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~g----~~l~s 273 (393)
T 1erj_A 205 ------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTRDG----QSVVS 273 (393)
T ss_dssp ------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECTTS----SEEEE
T ss_pred ------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC-CCCEEEEEECCCC----CEEEE
Confidence 567799999999 9999999999999999999998887776 344 6789999999998 88888
Q ss_pred cc---eeEEEccCCc------------eEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCC
Q 003356 372 GT---SMMQWDEYGY------------RLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (827)
Q Consensus 372 g~---~i~~W~~~~~------------~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d 433 (827)
|+ ++++|+..+. .+.....+|...|..+.+ ++.+++++.|+++++|++..+..
T Consensus 274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~--------- 344 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--------- 344 (393)
T ss_dssp EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE---------
T ss_pred EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE---------
Confidence 86 8999998653 345566788888865555 78899999999999999654432
Q ss_pred CCcceEEEeeeceeeccCCCcEEEEEEcC------CCCEEEEEeCCceE-EEEcCC
Q 003356 434 TDELKILHLNLPVSYISQNWPVQHVAASK------DGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 434 ~~~~~w~~~~~p~~~~~~~~~I~~va~Sp------dG~~lavag~dg~i-iwd~~t 482 (827)
...+.+|..+|.+++|++ ++++||+|+.||.+ +|++..
T Consensus 345 -----------~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 345 -----------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp -----------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred -----------EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 345678999999999986 78999999999999 999753
No 32
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.96 E-value=4.7e-28 Score=259.49 Aligned_cols=236 Identities=9% Similarity=0.049 Sum_probs=195.9
Q ss_pred CCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEE
Q 003356 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVE 281 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~ 281 (827)
.+...|.+++ ++|||+.+++++.|+++++|+..+.... .+|...+. ++|+|++++|++|+.|++|+
T Consensus 11 ~h~~~V~~~~----------fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 11 NRSDRVKGID----------FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp EECSCEEEEE----------ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred CCCCceEEEE----------ECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 3445566655 8899999999999999999998765433 67888887 99999999999999999999
Q ss_pred EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC-eeEEEeccccccceeeeeecC
Q 003356 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKP 360 (827)
Q Consensus 282 vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~-~l~~tl~~~~~~~v~s~~~sp 360 (827)
+||+.+ ++.+..+.+ |.+.|.+++|+|++.+|++|+.|++|++||+.++ .+..++.+| ...|.+++|+|
T Consensus 81 vwd~~~-~~~~~~~~~--------h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-~~~v~~v~~~p 150 (304)
T 2ynn_A 81 VFNYNT-GEKVVDFEA--------HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-EHFVMCVAFNP 150 (304)
T ss_dssp EEETTT-CCEEEEEEC--------CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC-CSCEEEEEECT
T ss_pred EEECCC-CcEEEEEeC--------CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc-CCcEEEEEECC
Confidence 999998 788888888 9999999999999999999999999999999876 566677777 67899999999
Q ss_pred C-CCCCccceeecc---eeEEEccCCceEEEEe-cCCcceEE--EEec---ceeeeecccCCCeeeeEEEEcCCeEEEEe
Q 003356 361 N-QDCKYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSERVL--IFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (827)
Q Consensus 361 ~-~~~~~~~l~sg~---~i~~W~~~~~~l~~~~-~~~~~~v~--~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~ 430 (827)
. + ..+++|+ ++++|+.......... .++...+. .+.+ ++.+++++.|+++++|++..+..
T Consensus 151 ~~~----~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~------ 220 (304)
T 2ynn_A 151 KDP----STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC------ 220 (304)
T ss_dssp TCT----TEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE------
T ss_pred CCC----CEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc------
Confidence 4 4 6677776 8999998766543333 34445553 4433 46899999999999999644322
Q ss_pred cCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeE
Q 003356 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (827)
Q Consensus 431 ~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w 485 (827)
..++.+|..+|.+++|+|++++||+|+.||.+ +||+.+++.
T Consensus 221 --------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 221 --------------VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp --------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred --------------ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 45677899999999999999999999999999 999998764
No 33
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=4.6e-28 Score=266.68 Aligned_cols=302 Identities=12% Similarity=0.092 Sum_probs=202.1
Q ss_pred cccEEEEcCCccEEEEEec-------CcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecC
Q 003356 69 ENLQAVWSPDTKLIAVVTS-------SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD 141 (827)
Q Consensus 69 ~~~~v~wSPDg~~lav~t~-------dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d 141 (827)
++.+++|+|||++||+|+. ++.|++|++......... .+ .....+.+..+...+++++++
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~-----------~~--~~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE-----------QF--HILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH-----------HE--EEEEEEECCTTSCCCCEEEEE
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee-----------ee--eeeeEEEccCCCCceEEEEeC
Confidence 6889999999999999875 346999999754321100 00 111112344555677888888
Q ss_pred CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcc
Q 003356 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (827)
Q Consensus 142 ~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (827)
++.++++..++...+ |.+...... + +..+. .
T Consensus 83 ~~~~~~g~~~~~~~l--~s~~~d~~~------------r------------------------------~~~~~--~--- 113 (365)
T 4h5i_A 83 KGIILVGCNENSTKI--TQGKGNKHL------------R------------------------------KFKYD--K--- 113 (365)
T ss_dssp TTEEEEECCCCHHHH--HHTSCCCCE------------E------------------------------EEEEE--T---
T ss_pred CCEEEEEECCCccEE--EEecCCCcE------------E------------------------------EEEec--C---
Confidence 888888876654433 222211111 0 10000 0
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEE-EEEcCCCCEEEEEe--cCCeEEEEEcCCCCcceEEEEee
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGT--RRGVVELYDLAESASLIRTVSLY 298 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-va~sp~~~lla~g~--~dg~v~vw~~~~~~~~~~~l~~~ 298 (827)
.++..-.... ........+...+. ++|||||+++|+++ .|++|+|||+.+ ++.+..+.
T Consensus 114 ------~~~~~~~~~~----------~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~-~~~~~~~~-- 174 (365)
T 4h5i_A 114 ------VNDQLEFLTS----------VDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD-LTEKFEIE-- 174 (365)
T ss_dssp ------TTTEEEEEEE----------ECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT-TEEEEEEE--
T ss_pred ------CCceEEEeee----------eceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC-CcEEEEeC--
Confidence 0111111000 00111123445566 99999999987554 789999999988 67666653
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeE-EEeccccccceeeeeecCCCCCCccceeecc----
Q 003356 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM-STIRQISLSSISSPIVKPNQDCKYEPLMSGT---- 373 (827)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~-~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---- 373 (827)
|.+.|.+++|||||++|++++.| ++++|+...+... ......+...+.+++|+|++ ..+++++
T Consensus 175 -------~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg----~~l~~~s~d~~ 242 (365)
T 4h5i_A 175 -------TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADD----TVLIAASLKKG 242 (365)
T ss_dssp -------CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT----EEEEEEEESSS
T ss_pred -------CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC----CEEEEEecCCc
Confidence 77889999999999999999975 5556655554443 33333336789999999998 7777654
Q ss_pred ---eeEEEccCCceE----EEEecCCcceEEE--Eec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEee
Q 003356 374 ---SMMQWDEYGYRL----YAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (827)
Q Consensus 374 ---~i~~W~~~~~~l----~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~ 443 (827)
.+..|+...... .....+|...|.+ |++ ++.+++|+.|+++++|++.++..
T Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~------------------- 303 (365)
T 4h5i_A 243 KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM------------------- 303 (365)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE-------------------
T ss_pred ceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE-------------------
Confidence 567788766543 2345677778855 455 89999999999999999644322
Q ss_pred ecee-eccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCC
Q 003356 444 LPVS-YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 444 ~p~~-~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~ 483 (827)
..+ +.+|..+|++++|||||++||+|+.|+++ +|++..+
T Consensus 304 -~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 304 -SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp -EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred -EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 334 35899999999999999999999999999 9999654
No 34
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=1.8e-27 Score=256.96 Aligned_cols=311 Identities=17% Similarity=0.155 Sum_probs=232.2
Q ss_pred CcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEE--EeecCCCeE
Q 003356 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHM 145 (827)
Q Consensus 68 G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~d~~~l 145 (827)
+.+.+++|||||+++|++..++.+..|....... ......+...|. ++++++..+
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~h~~~v~~~~~~~~~~~l 66 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHAR-----------------------QINTLNHGEVVCAVTISNPTRHV 66 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEE-----------------------EEEEECCSSCCCEEEECSSSSEE
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCccc-----------------------cceeccCCCceEEEEEecCCcEE
Confidence 5678999999999999988776554432211000 000112333443 446667778
Q ss_pred EEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEE
Q 003356 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (827)
Q Consensus 146 lv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (827)
++++ ||.+++|+.+....... +.. .....+...+.++.
T Consensus 67 ~~~~-dg~i~iw~~~~~~~~~~-----------~~~--------------------~~~~~~~~~v~~~~---------- 104 (337)
T 1gxr_A 67 YTGG-KGCVKVWDISHPGNKSP-----------VSQ--------------------LDCLNRDNYIRSCK---------- 104 (337)
T ss_dssp EEEC-BSEEEEEETTSTTCCSC-----------SEE--------------------EECSCTTSBEEEEE----------
T ss_pred EEcC-CCeEEEEECCCCCceee-----------eec--------------------ccccCCCCcEEEEE----------
Confidence 8877 99999976653321111 000 01123445576666
Q ss_pred EEeCCcEEEEeeccCccccceeeccc-----eecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
+++||+.++++..++.+++|+....+ ...+|...+. ++|+|+++++++|+.||.|++||+.+ ++.+..+..
T Consensus 105 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~-- 181 (337)
T 1gxr_A 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQG-- 181 (337)
T ss_dssp ECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC--
T ss_pred EcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-Cceeeeeec--
Confidence 66778888888888888888876554 1256777776 99999999999999999999999988 777777777
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeE
Q 003356 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~ 376 (827)
|.+.|.+++|+|||+.|++++.||.|++||+.+++....+.. ...+.+++|+|++ ..++.+. .+.
T Consensus 182 ------~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~v~~~~~s~~~----~~l~~~~~~~~i~ 249 (337)
T 1gxr_A 182 ------HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTG----EWLAVGMESSNVE 249 (337)
T ss_dssp ------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTS----SEEEEEETTSCEE
T ss_pred ------ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC--CCceEEEEECCCC----CEEEEEcCCCcEE
Confidence 999999999999999999999999999999999988877653 4579999999998 7777665 789
Q ss_pred EEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCC
Q 003356 377 QWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (827)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~ 453 (827)
+|+..+.+.. ....|...+..+.+ ++.+++++.|+.+++|++..+.. .....|..
T Consensus 250 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~---------------------~~~~~~~~ 307 (337)
T 1gxr_A 250 VLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---------------------IFQSKESS 307 (337)
T ss_dssp EEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------EEEEECSS
T ss_pred EEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE---------------------EEEecCCC
Confidence 9999988765 44677778855555 78899999999999998644332 12345778
Q ss_pred cEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 454 PVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 454 ~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
+|.+++|+|||+++++++.||.+ +|++
T Consensus 308 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 308 SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999999999999999 9986
No 35
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=9.5e-28 Score=263.38 Aligned_cols=274 Identities=14% Similarity=0.146 Sum_probs=186.4
Q ss_pred eEEEEEecceEEEEEcc-------CeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEE
Q 003356 23 QIIYFKVNNGLLLIASP-------CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFK 95 (827)
Q Consensus 23 ~vv~fspdg~lla~~~~-------~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~ 95 (827)
..|+|||||++||+++. +++.+|+.. .+.+... .......+.+.+.+++|+||++++ +++.||+|++||
T Consensus 46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~-~~~~~~~--~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd 121 (357)
T 4g56_B 46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP-EGAPNES--LCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWE 121 (357)
T ss_dssp EEEEECSSSCEEEEEECSSSSSCCEEEEEESSC-C---CGG--GCSEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC-
T ss_pred EEEEECCCCCEEEEEcCCCCccccCeEEEEECC-CCCccee--EecccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEee
Confidence 44899999999999974 457777663 2211100 001112234678999999998755 577899999999
Q ss_pred EEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecccC
Q 003356 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSS 173 (827)
Q Consensus 96 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p 173 (827)
+..+..... ......++...|.++ +++++.+++++.||.|++|+.. .....
T Consensus 122 ~~~~~~~~~-------------------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~--~~~~~------ 174 (357)
T 4g56_B 122 ILEKESLLV-------------------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS--QKAVL------ 174 (357)
T ss_dssp -------CC-------------------CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT--TTEEE------
T ss_pred ccccceeEE-------------------EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC--CCcEE------
Confidence 975432110 000112344455554 6778899999999999986543 22111
Q ss_pred CCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCc-EEEEeeccCccccceeeccce
Q 003356 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK 252 (827)
Q Consensus 174 ~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~~~~~~~~~~~~~~~ 252 (827)
..+..+...|.++. ++++++ ++++++.|+++++|+...++.
T Consensus 175 ----------------------------~~~~~h~~~v~~v~----------~s~~~~~~~~s~~~dg~v~~wd~~~~~~ 216 (357)
T 4g56_B 175 ----------------------------KSYNAHSSEVNCVA----------ACPGKDTIFLSCGEDGRILLWDTRKPKP 216 (357)
T ss_dssp ----------------------------EEECCCSSCEEEEE----------ECTTCSSCEEEEETTSCEEECCTTSSSC
T ss_pred ----------------------------EEEcCCCCCEEEEE----------EccCCCceeeeeccCCceEEEECCCCce
Confidence 11223445566665 556664 667777888899999876543
Q ss_pred e-----cCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCC-CEEEE
Q 003356 253 E-----LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAV 324 (827)
Q Consensus 253 ~-----~~h~~~v~-va~sp~-~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg-~~Las 324 (827)
. ..|...+. ++|+|+ +.+||+|+.|++|++||+.+ ++.++.+.+ |.++|++++|+||| ++||+
T Consensus 217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~~~~--------~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQTSAV--------HSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCEEECC--------CSSCEEEEEECSSSSCCEEE
T ss_pred eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC-CcEeEEEec--------cceeEEEEEEcCCCCCEEEE
Confidence 3 23455555 999997 57899999999999999998 788888888 99999999999997 58999
Q ss_pred EEcCCcEEEEeccCCeeEEEeccccccceeeeeecCC-CCCCccceeecc---eeEEEcc
Q 003356 325 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN-QDCKYEPLMSGT---SMMQWDE 380 (827)
Q Consensus 325 g~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~-~~~~~~~l~sg~---~i~~W~~ 380 (827)
|+.|++|+|||+.+++++..+ +| .+.|++++|+|. + ..+++++ ++++|+.
T Consensus 288 gs~D~~i~iwd~~~~~~~~~~-~H-~~~V~~vafsP~d~----~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 288 ISEDCTVAVLDADFSEVFRDL-SH-RDFVTGVAWSPLDH----SKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp EETTSCEEEECTTSCEEEEEC-CC-SSCEEEEEECSSST----TEEEEEETTSCEEEEEC
T ss_pred EeCCCEEEEEECCCCcEeEEC-CC-CCCEEEEEEeCCCC----CEEEEEcCCCeEEEEEC
Confidence 999999999999999888765 45 678999999984 4 4444443 4555554
No 36
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=7e-27 Score=250.82 Aligned_cols=275 Identities=16% Similarity=0.167 Sum_probs=221.5
Q ss_pred cccccceEEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccC
Q 003356 128 FAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (827)
Q Consensus 128 ~~~~~~~v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~ 205 (827)
+.++...|.++ .++++.+++++.||.+++|+..... .. ..+.
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~--~~----------------------------------~~~~ 62 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FE----------------------------------KTIS 62 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EE----------------------------------EEEC
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--cc----------------------------------hhhc
Confidence 34555666655 6777889999999999986543211 11 0112
Q ss_pred CCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEE
Q 003356 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVE 281 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~ 281 (827)
.+...|.++. +++||+.+++++.++++++|+....+.. .+|...+. ++|+|++++|++|+.||+|+
T Consensus 63 ~h~~~v~~~~----------~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 132 (312)
T 4ery_A 63 GHKLGISDVA----------WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132 (312)
T ss_dssp CCSSCEEEEE----------ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred cCCCceEEEE----------EcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 3344566655 6788899999999999999998766543 67888877 99999999999999999999
Q ss_pred EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCC
Q 003356 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (827)
Q Consensus 282 vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (827)
+||+.+ ++.+..+.. |.++|.+++|+|||++|++|+.||.|++||+.+++.+..+..++...+..++|+|+
T Consensus 133 iwd~~~-~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (312)
T 4ery_A 133 IWDVKT-GKCLKTLPA--------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 203 (312)
T ss_dssp EEETTT-CCEEEEECC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTT
T ss_pred EEECCC-CEEEEEecC--------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCC
Confidence 999988 777777777 99999999999999999999999999999999988888776655667999999999
Q ss_pred CCCCccceeecc---eeEEEccCCceEEEEecCCcceE----EEEec--ceeeeecccCCCeeeeEEEEcCCeEEEEecC
Q 003356 362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV----LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (827)
Q Consensus 362 ~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v----~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~ 432 (827)
+ ..++++. .+.+|+..+++......+|.... ..+.. ++.+++++.|+.+++|++..+..
T Consensus 204 ~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-------- 271 (312)
T 4ery_A 204 G----KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-------- 271 (312)
T ss_dssp S----SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE--------
T ss_pred C----CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh--------
Confidence 8 7787776 89999999999988887775432 33333 77899999999999999644332
Q ss_pred CCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEe--CCceE-EEEcC
Q 003356 433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG--LHGLI-LYDIR 481 (827)
Q Consensus 433 d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag--~dg~i-iwd~~ 481 (827)
...+.+|..+|.+++|+|+++++|+|+ .||.+ +|+..
T Consensus 272 ------------~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 272 ------------VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ------------EEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ------------hhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 456778999999999999999999997 69999 99864
No 37
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.96 E-value=1.8e-26 Score=281.06 Aligned_cols=401 Identities=13% Similarity=0.160 Sum_probs=278.0
Q ss_pred cCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEE--EeecCCCe
Q 003356 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKH 144 (827)
Q Consensus 67 ~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~d~~~ 144 (827)
.+.+.+++|||||++||+++.+|.|++|++..+... .. +.++...|. +++++++.
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~-------------~~----------~~~~~~~v~~~~~s~~~~~ 69 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV-------------RS----------IQVTETPVRAGKFIARKNW 69 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-------------EE----------EECCSSCEEEEEEEGGGTE
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceE-------------EE----------EecCCCcEEEEEEeCCCCE
Confidence 477899999999999999999999999997543211 10 122333444 45778889
Q ss_pred EEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEE
Q 003356 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (827)
Q Consensus 145 llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (827)
|++++.||.|++|+++... .. ..+..+...|.++.
T Consensus 70 l~~~~~dg~i~vw~~~~~~--~~----------------------------------~~~~~~~~~v~~~~--------- 104 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTGE--KV----------------------------------VDFEAHPDYIRSIA--------- 104 (814)
T ss_dssp EEEEETTSEEEEEETTTCC--EE----------------------------------EEEECCSSCEEEEE---------
T ss_pred EEEEeCCCeEEEEECCCCc--EE----------------------------------EEEecCCCCEEEEE---------
Confidence 9999999999997665321 11 01122344566665
Q ss_pred EEEeCCcEEEEeeccCccccceeeccc----eecCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCCcceEEEEee
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIKID----KELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~ 298 (827)
++|||+.+++++.++++++|+..... ...+|...+. ++|+| +++.+++|+.||+|++||+.+ +.....+..
T Consensus 105 -~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~- 181 (814)
T 3mkq_A 105 -VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTT- 181 (814)
T ss_dssp -ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-SSCSEEEEC-
T ss_pred -EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcceeEEec-
Confidence 67788888888889999999976542 2267888776 99999 899999999999999999987 666665555
Q ss_pred cCCCCCCCCCCeEEEEECC--CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---
Q 003356 299 DWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (827)
Q Consensus 299 ~~~~~~~h~~~V~~l~~sp--Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--- 373 (827)
.|.+.|.+++|+| ||.+|++|+.||.|++||+.++....++.+| ...+.+++|+|++ ..+++++
T Consensus 182 ------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~~~~~dg 250 (814)
T 3mkq_A 182 ------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTL----PIIISGSEDG 250 (814)
T ss_dssp ------CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSS----SEEEEEETTS
T ss_pred ------CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEeCCC
Confidence 1458999999999 9999999999999999999999999999887 6789999999998 7787776
Q ss_pred eeEEEccCCceEEEEecCCcceEEEEec---cee-eeecccCCCeeeeEEEEcC--------CeEEEEecCCCCcce---
Q 003356 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKC-CLNRGVSGMTYARQVIYGE--------DRLLVVQSEDTDELK--- 438 (827)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~-~~s~~~d~~~~~w~~~~~~--------~~~~~~~~~d~~~~~--- 438 (827)
.+.+|+..+++.......+...+..+.+ ++. +++.+.++.+.+|.+.... .+.+...+.+.....
T Consensus 251 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 330 (814)
T 3mkq_A 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFT 330 (814)
T ss_dssp CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEE
T ss_pred eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeee
Confidence 7999999999999888888888866665 332 3555666767777654322 222222222221110
Q ss_pred ------EE-----Eee-eceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEe
Q 003356 439 ------IL-----HLN-LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL 505 (827)
Q Consensus 439 ------w~-----~~~-~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~ 505 (827)
|. ... .......+...+++++|+|||+++++++ +|.+ +|++...+-. ....+..++|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~--------~~~~i~~~~~s 401 (814)
T 3mkq_A 331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK--------AFGKCQDFVWG 401 (814)
T ss_dssp EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE--------EEEECSEEEEC
T ss_pred eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc--------CCCceEEEEEe
Confidence 10 000 1112234566789999999999999999 6777 9997543321 22346688997
Q ss_pred C--CEEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEecCCccEEEEccC---CEEEEEEcCceEEEEEEE
Q 003356 506 G--KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYE---DYILVTYRPFDVHIFHVK 571 (827)
Q Consensus 506 ~--~~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l~~~~~~l~~~~---~~llV~~~~~~i~l~~~~ 571 (827)
. +.++++ .....+++|.........+. .+.++..+ ..+++...|+.+++|++.
T Consensus 402 pdg~~la~~-----~~~g~v~l~~~~~~~~~~v~--------~~~~s~dg~~~~~l~~~~~d~~v~~~d~~ 459 (814)
T 3mkq_A 402 PDSNSYALI-----DETGQIKYYKNFKEVTSWSV--------PMHSAIDRLFSGALLGVKSDGFVYFFDWD 459 (814)
T ss_dssp TTSSCEEEE-----CTTCCEEEEETTEECTTCCC--------CCSSCCCEEECSSSEEEEETTEEEEECTT
T ss_pred CCCCeEEEE-----eCCCcEEEEECCCCccceEE--------cCCcCccceecceEEEEecCCEEEEEECC
Confidence 4 455554 23356888865311111100 11122222 356666788999999763
No 38
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=5.6e-27 Score=260.75 Aligned_cols=284 Identities=14% Similarity=0.208 Sum_probs=201.0
Q ss_pred CceEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChH------hh------hhcCcccEEEEcCCccEEEEEecC
Q 003356 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSE------SV------QREGENLQAVWSPDTKLIAVVTSS 88 (827)
Q Consensus 21 ~~~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~------s~------~~~G~~~~v~wSPDg~~lav~t~d 88 (827)
....++|||||++||++++++++||+.. .+..+..+..... .+ .....+.+++|+|||++||+++.|
T Consensus 66 ~V~~v~fspdg~~la~g~~~~v~i~~~~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d 144 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCNKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 144 (393)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETT-TCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEECCCCCEEEEEcCCcEEEEEec-CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCC
Confidence 3456899999999999999999999994 6655554422110 00 011236789999999999999999
Q ss_pred cEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCccee
Q 003356 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFE 168 (827)
Q Consensus 89 g~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~ 168 (827)
|.|++||+....... .+.++...
T Consensus 145 ~~i~iwd~~~~~~~~-----------------------~~~~h~~~---------------------------------- 167 (393)
T 1erj_A 145 RLIRIWDIENRKIVM-----------------------ILQGHEQD---------------------------------- 167 (393)
T ss_dssp SCEEEEETTTTEEEE-----------------------EECCCSSC----------------------------------
T ss_pred CeEEEEECCCCcEEE-----------------------EEccCCCC----------------------------------
Confidence 999999975221000 01112222
Q ss_pred ecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceee
Q 003356 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (827)
Q Consensus 169 l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~ 248 (827)
|.++. +++||+.+++++.|+++++|+..
T Consensus 168 ------------------------------------------v~~~~----------~~p~~~~l~s~s~d~~v~iwd~~ 195 (393)
T 1erj_A 168 ------------------------------------------IYSLD----------YFPSGDKLVSGSGDRTVRIWDLR 195 (393)
T ss_dssp ------------------------------------------EEEEE----------ECTTSSEEEEEETTSEEEEEETT
T ss_pred ------------------------------------------EEEEE----------EcCCCCEEEEecCCCcEEEEECC
Confidence 22222 33444445555555555555544
Q ss_pred cccee--cCCCCcE-EEEEcC-CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEE
Q 003356 249 KIDKE--LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (827)
Q Consensus 249 ~~~~~--~~h~~~v-~va~sp-~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Las 324 (827)
+++.. ..+...+ +++++| ++++||+|+.||+|++||+.+ +..+..+.... ....+|.+.|.+++|+|||++|++
T Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 196 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT-CCEEEEEC-------CCCSSCEEEEEECTTSSEEEE
T ss_pred CCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEeecccc-cCCCCCCCCEEEEEECCCCCEEEE
Confidence 33221 1123334 499999 899999999999999999987 66655552210 111349999999999999999999
Q ss_pred EEcCCcEEEEeccC------------CeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEe
Q 003356 325 GWKSRGLTVWSVSG------------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 389 (827)
Q Consensus 325 g~~Dg~v~vWs~~~------------~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~ 389 (827)
|+.|++|++||+.. +.+..++.+| ...|.+++++|++ ..+++|+ .+++|+..+++.+..+
T Consensus 274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~sgs~D~~v~iwd~~~~~~~~~l 348 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQND----EYILSGSKDRGVLFWDKKSGNPLLML 348 (393)
T ss_dssp EETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECGGG----CEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECCCC----CEEEEEeCCCeEEEEECCCCeEEEEE
Confidence 99999999999864 2345566677 6789999999998 8888887 8999999999999999
Q ss_pred cCCcceEEEEec---------ceeeeecccCCCeeeeEEEE
Q 003356 390 EGSSERVLIFSF---------GKCCLNRGVSGMTYARQVIY 421 (827)
Q Consensus 390 ~~~~~~v~~~~~---------~~~~~s~~~d~~~~~w~~~~ 421 (827)
.+|...|..+.+ ++.+++++.|+++++|++..
T Consensus 349 ~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 349 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999966654 46799999999999999754
No 39
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=1.7e-26 Score=253.12 Aligned_cols=278 Identities=13% Similarity=0.127 Sum_probs=205.9
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
...++|+|||++||++ .|++|+||+.. +......... ..+.+.+++|+|||+.+|+++.||.+++|++....
T Consensus 67 V~~~~~s~d~~~l~s~s~Dg~v~vWd~~-~~~~~~~~~~------~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSF-TTNKEHAVTM------PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEEEC------SSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECC-CCCcceEEec------CCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence 3458999999999998 47899999984 5554444322 23567899999999999999999999999986432
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEEE--eecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcc
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~ 178 (827)
..... .....+.++...|.+ +.+++..+++++.||.+++|+.. .....
T Consensus 140 ~~~~~-----------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~--~~~~~----------- 189 (354)
T 2pbi_B 140 NENMA-----------------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE--SGQLL----------- 189 (354)
T ss_dssp TCCSG-----------------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT--TCCEE-----------
T ss_pred ccccc-----------------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC--CCeEE-----------
Confidence 11000 000112234444544 46677889999999999986543 22111
Q ss_pred cceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cC
Q 003356 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LG 255 (827)
Q Consensus 179 i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~ 255 (827)
..+..+...+..+.+++ .++|+.+++++.|+++++|+...++.. .+
T Consensus 190 -----------------------~~~~~h~~~v~~~~~~~--------~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~ 238 (354)
T 2pbi_B 190 -----------------------QSFHGHGADVLCLDLAP--------SETGNTFVSGGCDKKAMVWDMRSGQCVQAFET 238 (354)
T ss_dssp -----------------------EEEECCSSCEEEEEECC--------CSSCCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred -----------------------EEEcCCCCCeEEEEEEe--------CCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 01123344565555322 236789999999999999998766543 67
Q ss_pred CCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEE
Q 003356 256 SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (827)
Q Consensus 256 h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vW 334 (827)
|...+. ++|+|++++||+|+.|++|++||+.. .+.+..+... .+...+.+++|+|||++|++|+.|++|++|
T Consensus 239 h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~------~~~~~~~~~~~s~~g~~l~~g~~d~~i~vw 311 (354)
T 2pbi_B 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRA-DREVAIYSKE------SIIFGASSVDFSLSGRLLFAGYNDYTINVW 311 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCT------TCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCC------CcccceeEEEEeCCCCEEEEEECCCcEEEE
Confidence 888887 99999999999999999999999987 5555444331 145579999999999999999999999999
Q ss_pred eccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEc
Q 003356 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (827)
Q Consensus 335 s~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~ 379 (827)
|+..+..+.++.+| ...|++++|+|++ ..+++|+ ++++|+
T Consensus 312 d~~~~~~~~~l~~h-~~~v~~l~~spdg----~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 312 DVLKGSRVSILFGH-ENRVSTLRVSPDG----TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ETTTCSEEEEECCC-SSCEEEEEECTTS----SCEEEEETTSEEEEEC
T ss_pred ECCCCceEEEEECC-CCcEEEEEECCCC----CEEEEEcCCCCEEecC
Confidence 99988888899888 6789999999998 7777765 666664
No 40
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-26 Score=251.36 Aligned_cols=282 Identities=16% Similarity=0.266 Sum_probs=205.9
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccc--e---e-cC-CCCcEE-EEEcCCCCEEEEEec
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--K---E-LG-SGDAVC-ASIAPEQQILAVGTR 276 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~--~---~-~~-h~~~v~-va~sp~~~lla~g~~ 276 (827)
..+...|.+++ ++++ ++++++.|+++++|+..... . + .+ |...+. ++|+|++++||+|+.
T Consensus 11 ~~h~~~v~~~~----------~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 78 (330)
T 2hes_X 11 KLYKEKIWSFD----------FSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78 (330)
T ss_dssp ECCSSCEEEEE----------EETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred ccCCCceeeec----------cCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence 34556676665 4444 77888888899999876431 1 2 34 888887 999999999999999
Q ss_pred CCeEEEEEcCCC------CcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc-C---CeeEEEec
Q 003356 277 RGVVELYDLAES------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-G---CRLMSTIR 346 (827)
Q Consensus 277 dg~v~vw~~~~~------~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~-~---~~l~~tl~ 346 (827)
|++|++|++... ...+..+.+ |.++|.+++|+|||++||+|+.|++|++||+. + .+++.++.
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~~~--------h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAIIEG--------HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEEC------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred CCcEEEEEcccCcCccccceeEEEEcC--------CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 999999998531 234455666 99999999999999999999999999999993 2 25667788
Q ss_pred cccccceeeeeecCCCCCCccceeecc---eeEEEccCCc--eEEEEecCCcceEEEEec-----ceeeeecccCCCeee
Q 003356 347 QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERVLIFSF-----GKCCLNRGVSGMTYA 416 (827)
Q Consensus 347 ~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~--~l~~~~~~~~~~v~~~~~-----~~~~~s~~~d~~~~~ 416 (827)
+| ...|.+++|+|++ ..+++|+ ++++|+..+. +++..+.+|...|+.+.| +..+++++.|+++++
T Consensus 151 ~h-~~~v~~v~~~p~~----~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~i 225 (330)
T 2hes_X 151 EH-SQDVKHVIWHPSE----ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225 (330)
T ss_dssp CC-SSCEEEEEECSSS----SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEE
T ss_pred cC-CCceEEEEECCCC----CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEE
Confidence 87 6789999999998 8888887 8999998665 677888899999976666 346899999999999
Q ss_pred eEEEEcCCeEEEEecCCCCcceEEEeeeceeecc-CCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccce
Q 003356 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQE 494 (827)
Q Consensus 417 w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~-~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e 494 (827)
|++..+... ....|. ....+.+ |..+|.+++|++++ +||+|+.||.+ +||..+++|+.+......
T Consensus 226 w~~~~~~~~---------~~~~~~---~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~ 292 (330)
T 2hes_X 226 WKYMGDDED---------DQQEWV---CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALC 292 (330)
T ss_dssp EEEEEECTT---------SCEEEE---EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred EEecCCCcc---------ccceeE---EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence 998765321 011222 2233444 88899999999776 89999999999 999999988654221111
Q ss_pred EE-EEEEEEEEeC----CEEEEEEEeeCCCcEEEEEeeCC
Q 003356 495 QK-IQSKGLLWLG----KIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 495 ~~-~~v~gl~W~~----~~li~~~~~~~~~~~~lrly~~~ 529 (827)
+. ..|..+.|.. +.+++|+ .+..+++|...
T Consensus 293 h~~~~v~~v~~~~~~~~~~las~s-----~Dg~v~~W~~~ 327 (330)
T 2hes_X 293 HGVYEINVVKWLELNGKTILATGG-----DDGIVNFWSLE 327 (330)
T ss_dssp TTTSCEEEEEEC-----CCEEEEE-----TTSEEEEEEC-
T ss_pred cccceEEEEEEecCCCceEEEEec-----CCCcEEEEEec
Confidence 11 1466778864 3555552 23578998764
No 41
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.4e-28 Score=271.82 Aligned_cols=368 Identities=12% Similarity=0.104 Sum_probs=240.8
Q ss_pred EEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcC-CccEEEEEecCcEEEEEEEEecCcee
Q 003356 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEKSI 103 (827)
Q Consensus 25 v~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSP-Dg~~lav~t~dg~l~l~~v~~~~~~~ 103 (827)
..|+|+++.+++.. .|+.. +..+..+.+ .+.+.+.+++|+| |+++||+++.||+|++|++.......
T Consensus 33 ~~f~~~~~~~~~~~-----~w~~~--g~~~~~~~~-----~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 100 (437)
T 3gre_A 33 KEFGPIQEIVRSPN-----MGNLR--GKLIATLME-----NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE 100 (437)
T ss_dssp GGGCCCCCCCCCCC-----GGGCC--CCEEEEECT-----TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC
T ss_pred hhcCCccccccccc-----ccccc--ceEEeeecc-----CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc
Confidence 45899999887665 48863 444444311 1238899999999 99999999999999999986421100
Q ss_pred ecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccce
Q 003356 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (827)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~ 181 (827)
.. .....+ .+...|.++ .++++.+++++.||.|++|+.+............ ...++.
T Consensus 101 ~~-----------------~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~~i~~ 159 (437)
T 3gre_A 101 VY-----------------SSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN---CECIRK 159 (437)
T ss_dssp CC-----------------SCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE---EEEEEE
T ss_pred cc-----------------ceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc---cceeEE
Confidence 00 000001 233455554 5567889999999999997664211111100000 001111
Q ss_pred ecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cC--C
Q 003356 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LG--S 256 (827)
Q Consensus 182 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~--h 256 (827)
+.++.. .....+.++. ..+++||+.++++..++++++|+....+.. .+ |
T Consensus 160 ~~~~~~------------------~~~~~~~~~~--------~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h 213 (437)
T 3gre_A 160 INLKNF------------------GKNEYAVRMR--------AFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR 213 (437)
T ss_dssp EEGGGG------------------SSCCCEEEEE--------EEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred EEccCc------------------ccccCceEEE--------EEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence 111000 0222333333 235689999999999999999998766543 44 6
Q ss_pred CCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEEC----CCCCEEEEEEcCCcE
Q 003356 257 GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT----PDNSAFAVGWKSRGL 331 (827)
Q Consensus 257 ~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~s----pDg~~Lasg~~Dg~v 331 (827)
...+. ++|+|++++|++|+.||+|++||+.. ++.+..+.. +|..+|.+++|+ |||.+|++|+.||.|
T Consensus 214 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~-------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 214 HGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSF-------GDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp GCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBC-------TTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEec-------CCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 77777 99999999999999999999999988 777777652 178899999555 578899999999999
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecC--CcceEEEE--ecceeeee
Q 003356 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEG--SSERVLIF--SFGKCCLN 407 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~--~~~~v~~~--~~~~~~~s 407 (827)
++||+.++++..++.+| ...+..+.|+|++ ..+.... +.+ |...|.++ +.++.+++
T Consensus 286 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~l~~~~---------------~~~~~~~~~v~~l~~~~~~~l~s 345 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINS-DEQPSMEHFLPIE----KGLEELN---------------FCGIRSLNALSTISVSNDKILLT 345 (437)
T ss_dssp EEEETTTTEEEEEEESS-SSCCCGGGGSCBC----SSGGGCC---------------CCCCCSGGGGCCEEEETTEEEEE
T ss_pred EEEEcCCCcEEEEEEcC-CCCCccceecccc----cccccce---------------ecccccCCceEEEEECCceEEEe
Confidence 99999999999999887 5678888888876 3321110 122 55555333 33678899
Q ss_pred cccCCCeeeeEEEEcCCeEEEEecCCCC-cc---------eE--EE-----eeeceeeccCCCcEEEEEEcCC--CCEEE
Q 003356 408 RGVSGMTYARQVIYGEDRLLVVQSEDTD-EL---------KI--LH-----LNLPVSYISQNWPVQHVAASKD--GMFLA 468 (827)
Q Consensus 408 ~~~d~~~~~w~~~~~~~~~~~~~~~d~~-~~---------~w--~~-----~~~p~~~~~~~~~I~~va~Spd--G~~la 468 (827)
++.|+.+++|++..+.....+....... .. .. .. .........|...|.+++|+++ +.+|+
T Consensus 346 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~ 425 (437)
T 3gre_A 346 DEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLV 425 (437)
T ss_dssp EGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEE
T ss_pred cCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEE
Confidence 9999999999976655432222111000 00 00 00 0001123358999999999998 88999
Q ss_pred EEeCCceE-EEE
Q 003356 469 VAGLHGLI-LYD 479 (827)
Q Consensus 469 vag~dg~i-iwd 479 (827)
+|+.||.| +|+
T Consensus 426 s~~~dG~I~iw~ 437 (437)
T 3gre_A 426 ACDNSGLIGIFQ 437 (437)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCceEEEeC
Confidence 99999999 994
No 42
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.95 E-value=2.7e-26 Score=250.49 Aligned_cols=284 Identities=15% Similarity=0.188 Sum_probs=212.1
Q ss_pred EEEEEeCCcEEEEeeccCccccceeeccce------ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCC-cceEE
Q 003356 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDK------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA-SLIRT 294 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~------~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~-~~~~~ 294 (827)
.+.++|||+++++++.|+++++|+...... ..+|...+. ++|+|++++||+|+.|++|++|++.... ..+..
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~ 100 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTT 100 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEE
Confidence 355889999999999999999999875431 157888887 9999999999999999999999987622 34566
Q ss_pred EEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC---eeEEEeccccccceeeeeecCCCCCCccceee
Q 003356 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (827)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~---~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~s 371 (827)
+.+ |.++|.+++|+|||++||+|+.|++|++|++..+ .++..+.+| ...|.+++|+|++ ..+++
T Consensus 101 ~~~--------h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~----~~l~s 167 (345)
T 3fm0_A 101 LEG--------HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH-TQDVKHVVWHPSQ----ELLAS 167 (345)
T ss_dssp ECC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC-CSCEEEEEECSSS----SCEEE
T ss_pred ccC--------CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc-CCCeEEEEECCCC----CEEEE
Confidence 776 9999999999999999999999999999999765 345667676 6789999999998 88888
Q ss_pred cc---eeEEEccCCce--EEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEee
Q 003356 372 GT---SMMQWDEYGYR--LYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (827)
Q Consensus 372 g~---~i~~W~~~~~~--l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~ 443 (827)
|+ ++++|+..+.+ +...+.+|...|..+.| ++.+++++.|+++++|+.........+... .....|..
T Consensus 168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~--~~~~~~~~-- 243 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS--GSDPSWKC-- 243 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-----CEEEE--
T ss_pred EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee--ccCCccce--
Confidence 86 89999988765 34677889999965555 889999999999999997544321000000 00112222
Q ss_pred eceeecc-CCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEE---ee---CCccceEEEEEEEEEEeCC---EEEEE
Q 003356 444 LPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR---VF---GDITQEQKIQSKGLLWLGK---IIVVC 512 (827)
Q Consensus 444 ~p~~~~~-~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~---~f---~~~~~e~~~~v~gl~W~~~---~li~~ 512 (827)
..++.+ |...|.+++|+|++.++|+|+.|+.+ +|+..++.-. .+ ......+.-.|..++|..+ .+++|
T Consensus 244 -~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 244 -ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp -EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred -eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence 223333 88899999999999999999999999 9998765310 00 0000011224778999854 45555
Q ss_pred EEeeCCCcEEEEEeeCC
Q 003356 513 NYIDSSNTYELLFYPRY 529 (827)
Q Consensus 513 ~~~~~~~~~~lrly~~~ 529 (827)
+ .+..+++|...
T Consensus 323 s-----~Dg~v~~W~~~ 334 (345)
T 3fm0_A 323 S-----DDGEVAFWKYQ 334 (345)
T ss_dssp E-----TTSCEEEEEEC
T ss_pred C-----CCCcEEEEEec
Confidence 2 23568999875
No 43
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.95 E-value=2.5e-26 Score=250.40 Aligned_cols=296 Identities=14% Similarity=0.143 Sum_probs=210.7
Q ss_pred ccccccceEEEeec--------CCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCc
Q 003356 127 PFAEKGLSVSNIVS--------DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGA 198 (827)
Q Consensus 127 ~~~~~~~~v~~~~~--------d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~ 198 (827)
.+.++...|.+++. ++..|++|+.|+.|++|+...........
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~----------------------------- 66 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG----------------------------- 66 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSE-----------------------------
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccc-----------------------------
Confidence 35677778888754 67789999999999997665322110000
Q ss_pred eeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEE
Q 003356 199 FVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVG 274 (827)
Q Consensus 199 ~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g 274 (827)
.....+..+...|.++. ++++|+++++++.|+++++|+..+++.. .+|...+. ++|+|++++|++|
T Consensus 67 ~~~~~l~~h~~~V~~~~----------~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 136 (343)
T 2xzm_R 67 IPHKALTGHNHFVSDLA----------LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA 136 (343)
T ss_dssp EEEEEECCCSSCEEEEE----------ECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEE
T ss_pred cccchhccCCCceEEEE----------ECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence 00011234455566655 7789999999999999999998766543 68998887 9999999999999
Q ss_pred ecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCC----------CEEEEEEcCCcEEEEeccCCeeEEE
Q 003356 275 TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN----------SAFAVGWKSRGLTVWSVSGCRLMST 344 (827)
Q Consensus 275 ~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg----------~~Lasg~~Dg~v~vWs~~~~~l~~t 344 (827)
+.|++|++||+.. . ...... ...+|...|.+++|+|++ .+|++|+.|++|++||. ......+
T Consensus 137 ~~d~~i~~wd~~~-~-~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~ 208 (343)
T 2xzm_R 137 GAEREIKLWNILG-E-CKFSSA-----EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYT 208 (343)
T ss_dssp ETTSCEEEEESSS-C-EEEECC-----TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEE
T ss_pred cCCCEEEEEeccC-C-ceeeee-----cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEE
Confidence 9999999999874 2 222211 112488999999999997 79999999999999995 4566777
Q ss_pred eccccccceeeeeecCCCCCCccceeecc---eeEEEccC-CceEEEEecCCcceE--EEEecceeeeecccCCCeeeeE
Q 003356 345 IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGSSERV--LIFSFGKCCLNRGVSGMTYARQ 418 (827)
Q Consensus 345 l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~-~~~l~~~~~~~~~~v--~~~~~~~~~~s~~~d~~~~~w~ 418 (827)
+.+| ...|.+++|+|++ ..+++|+ .+++|+.. ......... +...| ++|++...+++++.|+.+++|+
T Consensus 209 ~~~h-~~~v~~~~~s~~g----~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~ 282 (343)
T 2xzm_R 209 FKAH-ESNVNHLSISPNG----KYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFN 282 (343)
T ss_dssp EECC-SSCEEEEEECTTS----SEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEE
T ss_pred EcCc-cccceEEEECCCC----CEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEE
Confidence 8777 6789999999999 8888887 89999984 333333322 23346 4555544455677888999999
Q ss_pred EEEcCCe-EEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCC
Q 003356 419 VIYGEDR-LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 419 ~~~~~~~-~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~ 483 (827)
+..+... +....... ........+|..+|.+++|+|+|++||+|+.||.+ +|+++++
T Consensus 283 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 283 LMTQSKAPVCTIEAEP--------ITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSSCCSCSEEECCCCS--------GGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred eCCCCCCceEEeecCc--------chhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 7544321 00000000 00001123688899999999999999999999999 9998765
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=7.2e-26 Score=244.33 Aligned_cols=312 Identities=12% Similarity=0.078 Sum_probs=228.6
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
...++|||||++++++ .++.+.+|........+.. ..+.+.+.+++|+||+++|++++ ||.|++|++....
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-------LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-------ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCcccccee-------ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 3458999999999877 4566777766322222222 12347789999999999999998 9999999986433
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEEE--eecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcc
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~ 178 (827)
... .+..+ . ...+...+.+ +.++++.+++++.+|.+++|+.+.......
T Consensus 84 ~~~----------~~~~~----~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----------- 134 (337)
T 1gxr_A 84 NKS----------PVSQL----D----CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK----------- 134 (337)
T ss_dssp CCS----------CSEEE----E----CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE-----------
T ss_pred cee----------eeecc----c----ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee-----------
Confidence 110 00000 0 1123334444 466778899999999999876553221111
Q ss_pred cceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cC
Q 003356 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LG 255 (827)
Q Consensus 179 i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~ 255 (827)
.....+...+.++. ++++|+.++++..++.+++|+....+.. .+
T Consensus 135 -----------------------~~~~~~~~~i~~~~----------~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~ 181 (337)
T 1gxr_A 135 -----------------------AELTSSAPACYALA----------ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG 181 (337)
T ss_dssp -----------------------EEEECSSSCEEEEE----------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred -----------------------eecccCCCceEEEE----------ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec
Confidence 01122334465555 6678888888888888899987765432 56
Q ss_pred CCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEE
Q 003356 256 SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (827)
Q Consensus 256 h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vW 334 (827)
|...+. ++|+|++++|++++.||.|++||+.+ ++.+..+. |.+++.+++|+|||+.|++++.|+.|++|
T Consensus 182 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~~~~i~~~ 251 (337)
T 1gxr_A 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-GRQLQQHD---------FTSQIFSLGYCPTGEWLAVGMESSNVEVL 251 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE---------CSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ccCceEEEEECCCCCEEEEEecCCcEEEEECCC-CceEeeec---------CCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence 888777 99999999999999999999999987 66555543 67889999999999999999999999999
Q ss_pred eccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeeeec
Q 003356 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNR 408 (827)
Q Consensus 335 s~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~ 408 (827)
++.++... .+..| ...+.+++|+|++ ..++++. .+.+|+..+++..... .+...+..+.+ ++.++++
T Consensus 252 ~~~~~~~~-~~~~~-~~~v~~~~~~~~~----~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~ 324 (337)
T 1gxr_A 252 HVNKPDKY-QLHLH-ESCVLSLKFAYCG----KWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTG 324 (337)
T ss_dssp ETTSSCEE-EECCC-SSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEE
T ss_pred ECCCCCeE-EEcCC-ccceeEEEECCCC----CEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEe
Confidence 99987654 45555 6789999999998 7777775 7999999988877543 45666755444 7889999
Q ss_pred ccCCCeeeeEEE
Q 003356 409 GVSGMTYARQVI 420 (827)
Q Consensus 409 ~~d~~~~~w~~~ 420 (827)
+.|+.+++|++.
T Consensus 325 ~~dg~i~iw~~~ 336 (337)
T 1gxr_A 325 SGDKKATVYEVI 336 (337)
T ss_dssp ETTSCEEEEEEE
T ss_pred cCCCeEEEEEEe
Confidence 999999999975
No 45
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=1.1e-25 Score=242.71 Aligned_cols=271 Identities=16% Similarity=0.184 Sum_probs=208.7
Q ss_pred ecCCCCcEE-EEEcCCC-CEEEEEecCCeEEEEEcCCCC----cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 003356 253 ELGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (827)
Q Consensus 253 ~~~h~~~v~-va~sp~~-~lla~g~~dg~v~vw~~~~~~----~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~ 326 (827)
+.+|.+.|. ++|+|++ ++|++|+.|++|++|++.... ..++.+.+ |.+.|.+++|+|||++|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--------HSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC--------CSSCEEEEEECTTSSEEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeC--------CcccEEEEEECCCCCEEEEEe
Confidence 478999998 9999965 899999999999999986421 23456666 999999999999999999999
Q ss_pred cCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec--
Q 003356 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-- 401 (827)
Q Consensus 327 ~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~-- 401 (827)
.|++|++||+.+++++.++.+| ...|.+++|+|++ ..+++|+ ++++|+..+ +.+....+|...+..+.+
T Consensus 85 ~D~~v~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQRFVGH-KSDVMSVDIDKKA----SMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp TTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTS----CEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECC
T ss_pred CCCEEEEEECCCCCeeEEEccC-CCcEEEEEEcCCC----CEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEcc
Confidence 9999999999999999999988 6789999999998 8888887 899999975 455667788888866555
Q ss_pred -c------eeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCc
Q 003356 402 -G------KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (827)
Q Consensus 402 -~------~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg 474 (827)
. ..+++++.|+++++|++.... +...+.+|..+|.+++|+|||++||+|+.||
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--------------------~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg 218 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQ--------------------IEADFIGHNSNINTLTASPDGTLIASAGKDG 218 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTTE--------------------EEEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcch--------------------hheeecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 1 268999999999999964322 1456778999999999999999999999999
Q ss_pred eE-EEEcCCCeEEe-eCCccceEEEEEEEEEEeCC--EEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEe---------
Q 003356 475 LI-LYDIRQKKWRV-FGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS--------- 541 (827)
Q Consensus 475 ~i-iwd~~t~~w~~-f~~~~~e~~~~v~gl~W~~~--~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~--------- 541 (827)
.+ +||+.+++-.. +. . .-.|..++|..+ .++++ . . ..+++|..+ .........
T Consensus 219 ~i~iwd~~~~~~~~~~~---~--~~~v~~~~~sp~~~~la~~-~-~----~~i~v~~~~---~~~~~~~~~~~~~~~~~~ 284 (319)
T 3frx_A 219 EIMLWNLAAKKAMYTLS---A--QDEVFSLAFSPNRYWLAAA-T-A----TGIKVFSLD---PQYLVDDLRPEFAGYSKA 284 (319)
T ss_dssp EEEEEETTTTEEEEEEE---C--CSCEEEEEECSSSSEEEEE-E-T----TEEEEEEET---TEEEEEEECCCCTTCCGG
T ss_pred eEEEEECCCCcEEEEec---C--CCcEEEEEEcCCCCEEEEE-c-C----CCcEEEEeC---cCeeeeccCccccccccC
Confidence 99 99999886321 11 1 113677888754 33333 2 1 247777654 111111110
Q ss_pred cCCc--cEEEEccCCEEEEEEcCceEEEEEEE
Q 003356 542 LLAK--PIVMDVYEDYILVTYRPFDVHIFHVK 571 (827)
Q Consensus 542 l~~~--~~~l~~~~~~llV~~~~~~i~l~~~~ 571 (827)
.... .+.+++.++.++.++.|+.|++|++.
T Consensus 285 ~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp GCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 1111 24556788899999999999999985
No 46
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=9.6e-26 Score=247.35 Aligned_cols=317 Identities=12% Similarity=0.076 Sum_probs=214.7
Q ss_pred cCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEE--eecCCCe
Q 003356 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKH 144 (827)
Q Consensus 67 ~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d~~~ 144 (827)
.+.+.+++|+|||++||+++.+|.|++|++...... ....+.++...|.+ +.++++.
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---------------------QVHELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE---------------------EEEEEECCSSCEEEEEEETTTTE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE---------------------eeeeecCCCCcccEEEEeCCCCE
Confidence 477899999999999999999999999999743200 00112233344544 4667889
Q ss_pred EEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEE
Q 003356 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (827)
Q Consensus 145 llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (827)
+++++.||.+++|+.+....... .....+...+.++.
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~~----------------------------------~~~~~~~~~v~~~~--------- 103 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKPT----------------------------------LVILRINRAARCVR--------- 103 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEEE----------------------------------EECCCCSSCEEEEE---------
T ss_pred EEEEcCCCeEEEEECCCCeeeee----------------------------------EEeecCCCceeEEE---------
Confidence 99999999999876532211000 11123344566666
Q ss_pred EEEeCCcEEEEeeccCccccceeeccce------e-cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCC---------
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK------E-LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE--------- 287 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~~~~------~-~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~--------- 287 (827)
++++|+.++++..++.+++|+...... . .+|...+. ++|+|++++|++|+.||.|++||+..
T Consensus 104 -~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 104 -WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp -ECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred -ECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 667888888888888888888776541 1 46777776 99999999999999999999999641
Q ss_pred --------CCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeec
Q 003356 288 --------SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (827)
Q Consensus 288 --------~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~s 359 (827)
.+..+..+.. |.+.|.+++|+|||++|++++.|+.|++||+.+++++.++..| ...+.+++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~ 253 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSS--------SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFI 253 (372)
T ss_dssp BTTBSCCCTTCEEEECCC--------CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEE
T ss_pred cccccccchhhheEecCC--------CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEEEEe
Confidence 1345555555 8999999999999999999999999999999999999888877 5679999999
Q ss_pred CCCCCCccceeecc--eeEEEccCC--ceEEEE--ecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCC
Q 003356 360 PNQDCKYEPLMSGT--SMMQWDEYG--YRLYAI--EEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (827)
Q Consensus 360 p~~~~~~~~l~sg~--~i~~W~~~~--~~l~~~--~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d 433 (827)
|++ ..+++|. .+.+|+..+ ++.... ...+... .......++.|.......+.
T Consensus 254 ~~~----~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~------- 311 (372)
T 1k8k_C 254 TES----SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS-----------SQRGLTARERFQNLDKKASS------- 311 (372)
T ss_dssp ETT----EEEEEETTSSCEEEEEETTTTEEEECCCCCCC-------------------CHHHHHHHCCCCC---------
T ss_pred cCC----CEEEEEeCCeEEEEEccCcCceEEEeeccCccccc-----------hhhhcchhhhhhhccccccc-------
Confidence 987 6666554 677887765 432111 1111000 00001112222000000000
Q ss_pred CCcceEEEeeeceee-ccCCCcEEEEEEc-CCC---CEEEEEeCCceE-EEEcCCCe
Q 003356 434 TDELKILHLNLPVSY-ISQNWPVQHVAAS-KDG---MFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 434 ~~~~~w~~~~~p~~~-~~~~~~I~~va~S-pdG---~~lavag~dg~i-iwd~~t~~ 484 (827)
.........+ .+|..+|.+++|+ ++| ++|++|+.||.+ +|++.+++
T Consensus 312 -----~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 312 -----EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp ------------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred -----ccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 0000000223 4899999999965 777 999999999999 99997653
No 47
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=2.9e-26 Score=253.80 Aligned_cols=292 Identities=12% Similarity=0.163 Sum_probs=206.7
Q ss_pred ceEEEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
...++|+|||++||+++ |++|+||+.. .+..+..+.. +.+.+.+++|+|||++||+++.|+.+++|++....
T Consensus 69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~-~~~~~~~~~~------h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQDGRLIVWNAL-TSQKTHAIKL------HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQA 141 (380)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEEEEC------CCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECC-CCccceEEec------CCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence 45589999999999984 7899999994 6555554432 23567899999999999999999999999986432
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecC-CCeEEEEecCCcEEEEecCCccCcceeecccCCCCc
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d-~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~ 177 (827)
.... .. .....+.++...+.++ .++ +..+++|+.|+.+++|+. ........
T Consensus 142 ~~~~-------~~---------~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~--~~~~~~~~-------- 195 (380)
T 3iz6_a 142 DRDG-------NM---------PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV--TTGQRISI-------- 195 (380)
T ss_dssp SCCC-------SS---------TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT--TTCCEEEE--------
T ss_pred cccC-------Cc---------cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc--CCCcEEEE--------
Confidence 1100 00 0011123444444443 333 356999999999998543 33221110
Q ss_pred ccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecc-c---ee
Q 003356 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-D---KE 253 (827)
Q Consensus 178 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~-~---~~ 253 (827)
.. ......+...+.++.++ .++++++++++.|+++++||.... + .+
T Consensus 196 ----~~-----------------~~~~~~h~~~v~~~~~~---------~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~ 245 (380)
T 3iz6_a 196 ----FG-----------------SEFPSGHTADVLSLSIN---------SLNANMFISGSCDTTVRLWDLRITSRAVRTY 245 (380)
T ss_dssp ----EC-----------------CCSSSSCCSCEEEEEEC---------SSSCCEEEEEETTSCEEEEETTTTCCCCEEE
T ss_pred ----ee-----------------cccCCCCccCeEEEEee---------cCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence 00 00012334456665532 237889999999999999997632 2 23
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEE
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
.+|...+. ++|+|++++||+|+.||+|++||+.+ +..+..+.... .....+...|++++|+|+|++|++|+.||.|+
T Consensus 246 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 323 (380)
T 3iz6_a 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNREP-DRNDNELPIVTSVAFSISGRLLFAGYSNGDCY 323 (380)
T ss_dssp CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECCCC-SSSCCSSCSCSEEEECSSSSEEEEECTTSCEE
T ss_pred CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecccc-cccccccCceEEEEECCCCCEEEEEECCCCEE
Confidence 68988887 99999999999999999999999988 66666655421 11112445699999999999999999999999
Q ss_pred EEeccCCeeEEEe----ccccccceeeeeecCCCCCCccceeecc---eeEEEccCCc
Q 003356 333 VWSVSGCRLMSTI----RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY 383 (827)
Q Consensus 333 vWs~~~~~l~~tl----~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~ 383 (827)
+||+..++....+ .+| ...|++++|+|++ ..+++|+ ++++|+..+.
T Consensus 324 vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg----~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 324 VWDTLLAEMVLNLGTLQNSH-EGRISCLGLSSDG----SALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEETTTCCEEEEECCSCSSC-CCCCCEEEECSSS----SEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCceEEEEecccCCC-CCceEEEEECCCC----CEEEEeeCCCCEEEEecCCC
Confidence 9999988887776 345 6789999999998 7777776 7777876553
No 48
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=8.1e-26 Score=270.66 Aligned_cols=297 Identities=18% Similarity=0.196 Sum_probs=215.8
Q ss_pred hcCcccEEEEcCCc-cEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEE--eecCC
Q 003356 66 REGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDN 142 (827)
Q Consensus 66 ~~G~~~~v~wSPDg-~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d~ 142 (827)
+.+.+.+++|+|++ ++|++++.||+|++|++....... ... ...+.++...|.+ +++++
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--------~~~----------~~~~~~h~~~v~~v~~s~~g 442 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--------GVA----------QRRLTGHSHFVEDVVLSSDG 442 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--------CEE----------EEEEECCSSCEEEEEECTTS
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--------ccc----------cceecCCCCcEEEEEECCCC
Confidence 34778999999975 799999999999999986432110 000 0112344455554 46778
Q ss_pred CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcce
Q 003356 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (827)
Q Consensus 143 ~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (827)
..+++|+.||.|++|+.... ... ..+..+...|.++.
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~~--~~~----------------------------------~~~~~h~~~v~~~~------- 479 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAAG--VST----------------------------------RRFVGHTKDVLSVA------- 479 (694)
T ss_dssp SEEEEEETTSEEEEEETTTT--EEE----------------------------------EEEECCSSCEEEEE-------
T ss_pred CEEEEEeCCCcEEEEECCCC--cce----------------------------------eEEeCCCCCEEEEE-------
Confidence 89999999999999655421 111 01223445566655
Q ss_pred EEEEEeCCcEEEEeeccCccccceeecccee------cCCCCcEE-EEEcCCC--CEEEEEecCCeEEEEEcCCCCcceE
Q 003356 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAVC-ASIAPEQ--QILAVGTRRGVVELYDLAESASLIR 293 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~-va~sp~~--~lla~g~~dg~v~vw~~~~~~~~~~ 293 (827)
+++||+.+++++.|+++++|+....... .+|...+. ++|+|++ ..+++|+.||+|++||+.+ .+...
T Consensus 480 ---~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~ 555 (694)
T 3dm0_A 480 ---FSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-CKLRS 555 (694)
T ss_dssp ---ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-CCEEE
T ss_pred ---EeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC-CcEEE
Confidence 7788888999999999999986433221 46777776 9999986 6899999999999999988 77777
Q ss_pred EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 003356 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
.+.+ |.+.|++++|+|||++|++|+.||+|++||+.+++.+.++..+ ..+.+++|+|++ ..++++.
T Consensus 556 ~~~~--------h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~----~~l~~~~ 621 (694)
T 3dm0_A 556 TLAG--------HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSPNR----YWLCAAT 621 (694)
T ss_dssp EECC--------CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS--SCEEEEEECSSS----SEEEEEE
T ss_pred EEcC--------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--CcEEEEEEcCCC----cEEEEEc
Confidence 8877 9999999999999999999999999999999999888877654 569999999987 6666554
Q ss_pred --eeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccC
Q 003356 374 --SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (827)
Q Consensus 374 --~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~ 451 (827)
.+++|+..+++++.....+...... . . .... +.....+
T Consensus 622 ~~~i~iwd~~~~~~~~~~~~~~~~~~~--------~-----------~-~~~~--------------------~~~~~~~ 661 (694)
T 3dm0_A 622 EHGIKIWDLESKSIVEDLKVDLKAEAE--------K-----------A-DNSG--------------------PAATKRK 661 (694)
T ss_dssp TTEEEEEETTTTEEEEEECCCCC--------------------------------------------------------C
T ss_pred CCCEEEEECCCCCChhhhccccccccc--------c-----------c-cccc--------------------cccCCce
Confidence 7899999988877665432110000 0 0 0000 1111223
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCceE-EEEcC
Q 003356 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (827)
Q Consensus 452 ~~~I~~va~SpdG~~lavag~dg~i-iwd~~ 481 (827)
...+.+++|||||++|++|+.||.+ +|++.
T Consensus 662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 3457899999999999999999999 99984
No 49
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-25 Score=249.66 Aligned_cols=326 Identities=9% Similarity=0.036 Sum_probs=231.2
Q ss_pred ceEEEEEecce-EEEEEc-cCeEEEeec----CCcee------EEEEEEeChHh---hh-hcCcccEEEEcCCccEEEEE
Q 003356 22 QQIIYFKVNNG-LLLIAS-PCHIELWSS----SQHKV------RLGKYKRDSES---VQ-REGENLQAVWSPDTKLIAVV 85 (827)
Q Consensus 22 ~~vv~fspdg~-lla~~~-~~~v~IW~~----~~~~~------~l~~~~r~~~s---~~-~~G~~~~v~wSPDg~~lav~ 85 (827)
...++|+|+|+ +||+++ ++.|+||+. . .+. ....+...... .. +.+.+.+++|+|||++||++
T Consensus 48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQ-EGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CSEEEECSSCTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred eEEEEECCCCCcEEEEecCCceEEEEEEecccC-CccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 45689999999 999884 689999999 5 333 22322221110 01 23578999999999999999
Q ss_pred ecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEE--eecCCCeEEEEecCCcEEEEecCCcc
Q 003356 86 TSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEF 163 (827)
Q Consensus 86 t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d~~~llv~t~dg~i~~~~w~~~~ 163 (827)
+.+|.|++|+. .+.. +. .+..+...|.+ +.+++..+++++.||.+++|+.....
T Consensus 127 ~~dg~i~i~~~-~~~~-------------~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 127 VENGELRLWNK-TGAL-------------LN----------VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp ETTSCEEEEET-TSCE-------------EE----------EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred eCCCeEEEEeC-CCCe-------------ee----------eccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence 99999999982 1111 11 01223334444 45677889999999999987664322
Q ss_pred CcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccc
Q 003356 164 YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK 243 (827)
Q Consensus 164 ~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~ 243 (827)
.... +.........+.. .........+.+ +.+++++. ++++..++.++
T Consensus 183 ~~~~-~~~~~~~~~~~~~--------------------~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~g~i~ 230 (425)
T 1r5m_A 183 VMQH-FELKETGGSSINA--------------------ENHSGDGSLGVD----------VEWVDDDK-FVIPGPKGAIF 230 (425)
T ss_dssp EEEE-ECCC-----------------------------------CCCBSC----------CEEEETTE-EEEECGGGCEE
T ss_pred EEEE-eeccccCccceee--------------------ccccCCcceeeE----------EEEcCCCE-EEEEcCCCeEE
Confidence 1110 0000000000000 000001111222 33566665 56667788888
Q ss_pred cceeeccce---ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCC
Q 003356 244 LAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (827)
Q Consensus 244 ~~~~~~~~~---~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg 319 (827)
+|+....+. +.+|...+. ++|+|++++|++|+.||.|++||+.+ ++....+.. |.+.|.+++|+|||
T Consensus 231 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~--------~~~~i~~~~~~~~~ 301 (425)
T 1r5m_A 231 VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYG--------HSQSIVSASWVGDD 301 (425)
T ss_dssp EEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECC--------CSSCEEEEEEETTT
T ss_pred EEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecC--------CCccEEEEEECCCC
Confidence 998776543 257888777 99999999999999999999999988 777777776 89999999999999
Q ss_pred CEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCce------------
Q 003356 320 SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR------------ 384 (827)
Q Consensus 320 ~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~------------ 384 (827)
.+++++.|+.|++||+.+++++..+..| ...+.+++|+|++ ..++++. .+.+|+..+.+
T Consensus 302 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~----~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 375 (425)
T 1r5m_A 302 -KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIFAGRISQDG----QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG 375 (425)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEEEEEECTTS----SEEEEEETTSCEEEEECHHHHC-----------
T ss_pred -EEEEEeCCCcEEEEECCCCcEeEecccC-CccEEEEEEcCCC----CEEEEEECCCeEEEEECCCCccceeeeeccccc
Confidence 9999999999999999999999888877 5689999999998 7787776 89999998887
Q ss_pred --------EEEEecCCcc--eEEEEec---ceeeeecccCCCeeeeEE
Q 003356 385 --------LYAIEEGSSE--RVLIFSF---GKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 385 --------l~~~~~~~~~--~v~~~~~---~~~~~s~~~d~~~~~w~~ 419 (827)
++..+.+|.. .|..+.+ ++.+++++.|+.+++|++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 376 ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp ---CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred ccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 8888888866 7865555 778999999999999985
No 50
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=1e-25 Score=254.69 Aligned_cols=298 Identities=15% Similarity=0.139 Sum_probs=236.0
Q ss_pred EEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCc
Q 003356 74 VWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGS 153 (827)
Q Consensus 74 ~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~ 153 (827)
++++||++||+++.||.|++|++..+... ..+.++...|.++..+++.+++++.||.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~-----------------------~~~~~h~~~v~~~~~~~~~l~s~~~dg~ 180 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCL-----------------------RTLVGHTGGVWSSQMRDNIIISGSTDRT 180 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEE-----------------------EECCCCSSCEEEEEEETTEEEEEETTSC
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEE-----------------------EEEcCCCCCEEEEEecCCEEEEEeCCCe
Confidence 57788999999999999999998543211 1134556678888888899999999999
Q ss_pred EEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEE
Q 003356 154 LYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM 233 (827)
Q Consensus 154 i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~ 233 (827)
+++|+++... .. ..+..+...|.++.+ +++.+
T Consensus 181 i~vwd~~~~~--~~----------------------------------~~~~~h~~~v~~~~~------------~~~~l 212 (445)
T 2ovr_B 181 LKVWNAETGE--CI----------------------------------HTLYGHTSTVRCMHL------------HEKRV 212 (445)
T ss_dssp EEEEETTTTE--EE----------------------------------EEECCCSSCEEEEEE------------ETTEE
T ss_pred EEEEECCcCc--EE----------------------------------EEECCCCCcEEEEEe------------cCCEE
Confidence 9997654321 11 011233445655552 46778
Q ss_pred EEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCC
Q 003356 234 SCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP 309 (827)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~ 309 (827)
++++.++++++|+...++.. .+|...+. +++ +++++++|+.||+|++||+.+ ++.+..+.+ |.+.
T Consensus 213 ~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--------~~~~ 281 (445)
T 2ovr_B 213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET-ETCLHTLQG--------HTNR 281 (445)
T ss_dssp EEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG-TEEEEEECC--------CSSC
T ss_pred EEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC-CcEeEEecC--------CCCc
Confidence 88888899999998766543 67888776 777 789999999999999999988 777888877 9999
Q ss_pred eEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEE
Q 003356 310 VSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLY 386 (827)
Q Consensus 310 V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~ 386 (827)
|.+++| ||..+++|+.||.|++||+.+++++.++.+| ...+.++.++ + ..+++|. .+.+|+..+++.+
T Consensus 282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~--~----~~l~~~~~dg~i~vwd~~~~~~~ 352 (445)
T 2ovr_B 282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELK--D----NILVSGNADSTVKIWDIKTGQCL 352 (445)
T ss_dssp EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEEE--T----TEEEEEETTSCEEEEETTTCCEE
T ss_pred eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEEEe--C----CEEEEEeCCCeEEEEECCCCcEE
Confidence 999999 8999999999999999999999999999887 5567777664 3 5566665 8999999999988
Q ss_pred EEecC---CcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceee-----ccCCCcEEE
Q 003356 387 AIEEG---SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY-----ISQNWPVQH 457 (827)
Q Consensus 387 ~~~~~---~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~-----~~~~~~I~~ 457 (827)
....+ |...|.++.+ ++.+++++.|+.+++|++..+.. ...+ .+|..+|.+
T Consensus 353 ~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------------------~~~~~~~~~~~~~~~v~~ 412 (445)
T 2ovr_B 353 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF--------------------IRNLVTLESGGSGGVVWR 412 (445)
T ss_dssp EEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE--------------------EEEEEECTTGGGTCEEEE
T ss_pred EEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCce--------------------eeeeeccccCCCCceEEE
Confidence 88875 7778888888 88999999999999999754433 1122 367889999
Q ss_pred EEEcCCCCEEEEEeCCce----E-EEEcCC
Q 003356 458 VAASKDGMFLAVAGLHGL----I-LYDIRQ 482 (827)
Q Consensus 458 va~SpdG~~lavag~dg~----i-iwd~~t 482 (827)
++|+|+|.++|+|+.||. + +||...
T Consensus 413 ~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 413 IRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 999999999999999997 7 999864
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.8e-27 Score=261.45 Aligned_cols=325 Identities=12% Similarity=0.134 Sum_probs=226.1
Q ss_pred eEEEEEecce-EEEEE-----------ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcE
Q 003356 23 QIIYFKVNNG-LLLIA-----------SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLY 90 (827)
Q Consensus 23 ~vv~fspdg~-lla~~-----------~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~ 90 (827)
..++|||||+ +||++ .++.|+||+.. ..... +....+.+.+.+.+++|+||+++||+++.||.
T Consensus 16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~-~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLL-AADSE----KPIASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESS-SGGGC----SCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEcc-CCCCC----cEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 3478999997 88887 35689999995 33211 11112234577899999999999999999999
Q ss_pred EEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEE--eecC-CCeEEEEecCCcEEEEecCCccCcce
Q 003356 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSD-NKHMLLGLSDGSLYSISWKGEFYGAF 167 (827)
Q Consensus 91 l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d-~~~llv~t~dg~i~~~~w~~~~~~~~ 167 (827)
|++|++....... ..+ ..+.++...|.+ +.++ +..+++++.||.|++|+.........
T Consensus 91 v~vw~~~~~~~~~---------~~~----------~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 91 LELYSTNEANNAI---------NSM----------ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp EEEECCSSTTSCC---------CEE----------EECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT
T ss_pred EEEeecccccccc---------cch----------hhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc
Confidence 9999986421100 000 012233344444 4555 67899999999998854432221000
Q ss_pred eecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeC-CcEEEEeeccCccccce
Q 003356 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAE 246 (827)
Q Consensus 168 ~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~d-G~~~~~~~~~~~~~~~~ 246 (827)
. ..... ......+...+.++. ++++ +++++++..++.+++|+
T Consensus 152 ~-------~~~~~--------------------~~~~~~~~~~v~~~~----------~~~~~~~~l~~~~~dg~v~iwd 194 (416)
T 2pm9_A 152 N-------YTPLT--------------------PGQSMSSVDEVISLA----------WNQSLAHVFASAGSSNFASIWD 194 (416)
T ss_dssp T-------CCCBC--------------------CCCSCCSSCCCCEEE----------ECSSCTTEEEEESSSSCEEEEE
T ss_pred c-------ccccc--------------------cccccCCCCCeeEEE----------eCCCCCcEEEEEcCCCCEEEEE
Confidence 0 00000 001123344555555 5666 67888888888899998
Q ss_pred eecccee---cCC------CCcEE-EEEcCCC-CEEEEEecCC---eEEEEEcCCCCcceEEEE-eecCCCCCCCCCCeE
Q 003356 247 FIKIDKE---LGS------GDAVC-ASIAPEQ-QILAVGTRRG---VVELYDLAESASLIRTVS-LYDWGYSMDDTGPVS 311 (827)
Q Consensus 247 ~~~~~~~---~~h------~~~v~-va~sp~~-~lla~g~~dg---~v~vw~~~~~~~~~~~l~-~~~~~~~~~h~~~V~ 311 (827)
....+.. ..+ ...+. ++|+|++ .++++|+.|+ .|++||+.+.......+. + |.+.|.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~v~ 266 (416)
T 2pm9_A 195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG--------HQKGIL 266 (416)
T ss_dssp TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC--------CSSCEE
T ss_pred CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC--------ccCcee
Confidence 7765433 222 56666 9999997 6999999999 999999987335555555 5 999999
Q ss_pred EEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEE
Q 003356 312 CIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA 387 (827)
Q Consensus 312 ~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~ 387 (827)
+++|+| |+.+|++++.|+.|++||+.+++++.++..| ...+.+++|+|++. ..+++++ .+.+|+..+.....
T Consensus 267 ~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~---~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 267 SLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-GNWCFKTKFAPEAP---DLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-SSCCCCEEECTTCT---TEEEECCSSSEEEEEESCCCCCSS
T ss_pred EEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-CCceEEEEECCCCC---CEEEEEecCCcEEEEEccCCCCCc
Confidence 999999 9999999999999999999999999999887 67899999999862 3566665 88999987654211
Q ss_pred Eec-----------------C------------------CcceE--EEEec-ceeeeecccCCCeeeeEEE
Q 003356 388 IEE-----------------G------------------SSERV--LIFSF-GKCCLNRGVSGMTYARQVI 420 (827)
Q Consensus 388 ~~~-----------------~------------------~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~ 420 (827)
... + +...+ .+|++ ++.+++++.|+++++|++.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 343 DEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp CC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred ccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 110 0 23333 56777 8999999999999999864
No 52
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.5e-27 Score=267.32 Aligned_cols=229 Identities=8% Similarity=0.049 Sum_probs=161.5
Q ss_pred CCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccc----eecCCCCcEE-E--EEcCCC-CEEEEEecC
Q 003356 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----KELGSGDAVC-A--SIAPEQ-QILAVGTRR 277 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~v~-v--a~sp~~-~lla~g~~d 277 (827)
.+...+.+++| ++++ .+++++.|+++++|+..++. .+.+|...|. + +|+|++ .+||+|+.|
T Consensus 264 ~h~~~v~sv~~----------s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D 332 (524)
T 2j04_B 264 LADSLITTFDF----------LSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVD 332 (524)
T ss_dssp CTTTCEEEEEE----------SSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETT
T ss_pred cCCCCEEEEEe----------cCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccC
Confidence 34556777664 4443 67888889999999987542 2368998887 7 578888 899999999
Q ss_pred CeEEEEEcCCCCcceEEEEeecCCCCCCCC--CCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceee
Q 003356 278 GVVELYDLAESASLIRTVSLYDWGYSMDDT--GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISS 355 (827)
Q Consensus 278 g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~--~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s 355 (827)
|+|+|||+.+ .+...++.+ |. +.|.+++|+|||+.+|+++.|++|++||+..+.+..++.+| .+.|++
T Consensus 333 ~tvklWD~~~-~~~~~~~~~--------~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH-~~~V~s 402 (524)
T 2j04_B 333 GYFYIFNPKD-IATTKTTVS--------RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR-ETTITA 402 (524)
T ss_dssp SEEEEECGGG-HHHHCEEEE--------ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC-SSCEEE
T ss_pred CeEEEEECCC-CCccccccc--------ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC-CCceEE
Confidence 9999999988 677767766 54 35899999999999999999999999999998888888887 788999
Q ss_pred eeecCCCCCCccceeecc---eeEEEccCCceEEEEecC-----CcceEEEEec---ceeeeecccCCCeeeeEEEEcCC
Q 003356 356 PIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG-----SSERVLIFSF---GKCCLNRGVSGMTYARQVIYGED 424 (827)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~-----~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~ 424 (827)
++|+|++ ..+++|+ ++++|++... ++..... +...++.+.+ ++.+ .. +....+|....
T Consensus 403 va~Sp~g----~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~--~~~~~~~~~~~--- 471 (524)
T 2j04_B 403 IGVSRLH----PMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY-RI--DSSYEVYPLTV--- 471 (524)
T ss_dssp EECCSSC----CBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE-EE--CCCCCCCC------
T ss_pred EEeCCCC----CeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE-Ec--cCCceeccccc---
Confidence 9999998 8888887 8999998653 2111111 0113444433 2111 11 11111221110
Q ss_pred eEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCC---CEEEEEeCCceE-EEEcCC
Q 003356 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG---MFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 425 ~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG---~~lavag~dg~i-iwd~~t 482 (827)
..+++.++.+|..+|.+++|||++ ..+|+|+.+|++ +|++.-
T Consensus 472 ----------------~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 472 ----------------NDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp --------------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ----------------CCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 112355677899999999999995 499999999999 999753
No 53
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=1.2e-26 Score=261.75 Aligned_cols=302 Identities=13% Similarity=0.095 Sum_probs=198.4
Q ss_pred CcccEEEEcC-CccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeec---CCC
Q 003356 68 GENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS---DNK 143 (827)
Q Consensus 68 G~~~~v~wSP-Dg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~---d~~ 143 (827)
+.+++++|+| ++++||+|+.||.|+|||+..+..... ..+.++...|.++.. ++.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~---------------------~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF---------------------IKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE---------------------ECCCSSSCCCCEEEECSSCTT
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE---------------------EEccCCCCCEEEEEEeCCCCC
Confidence 4588999999 677999999999999999865432111 112345556666543 467
Q ss_pred eEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceE
Q 003356 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (827)
Q Consensus 144 ~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (827)
.|++++.||.|++|+.++....... ........+.+
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~----------------------------------~~~~~~~~~~~---------- 214 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFA----------------------------------SSDTINIWFCS---------- 214 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEE----------------------------------CCSSCSCCCCC----------
T ss_pred EEEEEeCCCEEEEeeccCCceeEEe----------------------------------ccCCCCccEEE----------
Confidence 8999999999999765432111110 00001111222
Q ss_pred EEEEeCCcEEEEeeccCccccceeeccc--eecCCCCcEE-EEEcCCCC-EEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~-va~sp~~~-lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
+.+++||++++++..++++++|+..... .+.+|...+. ++|+|+++ ++++|+.||+|++||+.. .+....+.
T Consensus 215 ~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~-~~~~~~~~--- 290 (435)
T 4e54_B 215 LDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-VRGKASFL--- 290 (435)
T ss_dssp EEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT-CCSSSCCS---
T ss_pred EEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccc-ccccceEE---
Confidence 4478899999999999999999975432 2367888887 99999876 899999999999999987 33222111
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEc
Q 003356 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD 379 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~ 379 (827)
...+|.++|++++|+|||++|++|+.||.|++||+..+.+...+..|.... . .. . ......|.
T Consensus 291 --~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~---------~----~~-~-~~~~~~~~ 353 (435)
T 4e54_B 291 --YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH---------F----QH-L-TPIKAAWH 353 (435)
T ss_dssp --BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC---------C----SS-S-CCCBCEEC
T ss_pred --EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc---------c----cc-c-eeEEEEEc
Confidence 112399999999999999999999999999999999887777666552110 0 00 0 01122444
Q ss_pred cCCceEEEEecCCcceEEEEec-ce-eeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEE
Q 003356 380 EYGYRLYAIEEGSSERVLIFSF-GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (827)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~-~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~ 457 (827)
+.+..+... +.. +. .+.++..++++++|+...+... ...+.+|...|.+
T Consensus 354 ~~~~~~~~~----------~~~d~~~~~~~~~~~~~i~iwd~~~g~~~-------------------~~l~~~~~~~v~s 404 (435)
T 4e54_B 354 PRYNLIVVG----------RYPDPNFKSCTPYELRTIDVFDGNSGKMM-------------------CQLYDPESSGISS 404 (435)
T ss_dssp SSSSCEEEE----------CCCCTTSCCSSTTCCCCEEEECSSSCCEE-------------------EEECCSSCCCCCC
T ss_pred CCCCEEEEE----------EcCCCCeEEEEecCCCEEEEEECCCCcEE-------------------EEEeCCCCCcEEE
Confidence 433222211 111 22 2334555667888886444321 1223467778888
Q ss_pred E-EEcCCCCEEEEEeCCceE-EEEcCCCeE
Q 003356 458 V-AASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (827)
Q Consensus 458 v-a~SpdG~~lavag~dg~i-iwd~~t~~w 485 (827)
+ +|||||++||+|+ |+.+ +||+++++-
T Consensus 405 ~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 405 LNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 7 6999999999887 6778 999998864
No 54
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=2.1e-25 Score=238.01 Aligned_cols=249 Identities=16% Similarity=0.116 Sum_probs=192.7
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecc-----ceecCCCCcEE-EEEcCC--CCEEEEEec
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-----DKELGSGDAVC-ASIAPE--QQILAVGTR 276 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~-va~sp~--~~lla~g~~ 276 (827)
..+...|.+++ +++||+.+++++.|+++++|+.... ..+.+|.+.|. ++|+|+ +++||+|+.
T Consensus 6 ~~h~~~V~~~~----------~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 6 NAHNEMIHDAV----------MDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp CSCSSCEEEEE----------ECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred cCCcCceEEEE----------ECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC
Confidence 34555676655 7889999999999999999997532 23478999998 999864 899999999
Q ss_pred CCeEEEEEcCCCCc--ceEEEEeecCCCCCCCCCCeEEEEECCC--CCEEEEEEcCCcEEEEeccCCe--eEEEeccccc
Q 003356 277 RGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISL 350 (827)
Q Consensus 277 dg~v~vw~~~~~~~--~~~~l~~~~~~~~~~h~~~V~~l~~spD--g~~Lasg~~Dg~v~vWs~~~~~--l~~tl~~~~~ 350 (827)
||+|++||+.+ +. .+..+.. |.+.|.+++|+|+ |.+||+|+.|++|++|++..+. ....+.+| .
T Consensus 76 D~~v~iWd~~~-~~~~~~~~~~~--------h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h-~ 145 (297)
T 2pm7_B 76 DGKVMIWKEEN-GRWSQIAVHAV--------HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH-A 145 (297)
T ss_dssp TTEEEEEEBSS-SCBCCCEEECC--------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC-S
T ss_pred CCEEEEEEcCC-CceEEEEEeec--------CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc-c
Confidence 99999999987 43 4455665 9999999999998 8999999999999999997653 23455666 6
Q ss_pred cceeeeeecCCCCC---------Cccceeecc---eeEEEccCCce----EEEEecCCcceEEEEec---c---eeeeec
Q 003356 351 SSISSPIVKPNQDC---------KYEPLMSGT---SMMQWDEYGYR----LYAIEEGSSERVLIFSF---G---KCCLNR 408 (827)
Q Consensus 351 ~~v~s~~~sp~~~~---------~~~~l~sg~---~i~~W~~~~~~----l~~~~~~~~~~v~~~~~---~---~~~~s~ 408 (827)
..|.+++|+|+... ....+++|+ ++++|+..+.+ +...+.+|...|..+.| + +.++++
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence 78999999997410 114677776 89999987654 66678899999966655 2 679999
Q ss_pred ccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcC-CCeEE
Q 003356 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-QKKWR 486 (827)
Q Consensus 409 ~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~-t~~w~ 486 (827)
+.|+++++|++...... |... ......|..+|.+++|+|+|++||+|+.||.+ +|+.. .|.|.
T Consensus 226 s~D~~v~iWd~~~~~~~-------------~~~~--~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~ 290 (297)
T 2pm7_B 226 SQDRTCIIWTQDNEQGP-------------WKKT--LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290 (297)
T ss_dssp ETTSCEEEEEESSTTSC-------------CEEE--ESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred ECCCcEEEEEeCCCCCc-------------ccee--eeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEE
Confidence 99999999997543321 0000 00113577889999999999999999999999 99986 56787
Q ss_pred ee
Q 003356 487 VF 488 (827)
Q Consensus 487 ~f 488 (827)
..
T Consensus 291 ~~ 292 (297)
T 2pm7_B 291 PA 292 (297)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 55
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=2e-25 Score=246.79 Aligned_cols=293 Identities=13% Similarity=0.092 Sum_probs=204.8
Q ss_pred cCcccEEEEcCCc-cEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ec-CC
Q 003356 67 EGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VS-DN 142 (827)
Q Consensus 67 ~G~~~~v~wSPDg-~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~-d~ 142 (827)
.+.+.+++|+||| ++||+++.||.|++|++......... ...++...|.++ .+ ++
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------------~~~~h~~~v~~~~~~~~~~ 131 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI---------------------QGMGPGDAITGMKFNQFNT 131 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE---------------------CCCSTTCBEEEEEEETTEE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee---------------------ecCCcCCceeEEEeCCCCC
Confidence 4778999999999 99999999999999998644321111 112344455555 44 45
Q ss_pred CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcce
Q 003356 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (827)
Q Consensus 143 ~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (827)
..+++++.||.+++|+..+...... .........+.+++
T Consensus 132 ~~l~s~~~d~~i~iwd~~~~~~~~~----------------------------------~~~~~~~~~v~~~~------- 170 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSGSVIQVF----------------------------------AKTDSWDYWYCCVD------- 170 (383)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEEE----------------------------------ECCCCSSCCEEEEE-------
T ss_pred CEEEEEeCCCEEEEEECCCCceEEE----------------------------------eccCCCCCCeEEEE-------
Confidence 7889999999999876653211110 00111234465555
Q ss_pred EEEEEeCCcEEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCCCC-EEEEEecCCeEEEEEcCCCC---cceEE
Q 003356 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESA---SLIRT 294 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~~~-lla~g~~dg~v~vw~~~~~~---~~~~~ 294 (827)
+++||+.++++..++.+++|+.. .+. +.+|...+. ++|+|+++ ++++|+.||+|++||+.+.. ..+..
T Consensus 171 ---~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 246 (383)
T 3ei3_B 171 ---VSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE 246 (383)
T ss_dssp ---EETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE
T ss_pred ---ECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE
Confidence 77889999999999999999973 322 267888887 99999999 99999999999999998622 23333
Q ss_pred EEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 003356 295 VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
+ . |.+.|.+++|+| ||++|++++.|+.|++||+.++....++.+|... . .......
T Consensus 247 ~-~--------~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~-------------~~~~~~~ 303 (383)
T 3ei3_B 247 M-P--------HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR-Q-------------FQHLTPI 303 (383)
T ss_dssp E-E--------CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC-C-------------CTTSCCC
T ss_pred e-c--------CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc-c-------------cccccce
Confidence 3 4 899999999999 9999999999999999999888776666654110 0 0000001
Q ss_pred eeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeecc--
Q 003356 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-- 450 (827)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~-- 450 (827)
. ..|.+.+..+. ..+++ ++. +++.|+++++|++..+.. ...+.+
T Consensus 304 ~-~~~~p~~~~~~----------~~~s~dg~~--s~s~d~~i~iwd~~~~~~--------------------~~~l~~~~ 350 (383)
T 3ei3_B 304 K-ATWHPMYDLIV----------AGRYPDDQL--LLNDKRTIDIYDANSGGL--------------------VHQLRDPN 350 (383)
T ss_dssp C-CEECSSSSEEE----------EECBCCTTT--CTTCCCCEEEEETTTCCE--------------------EEEECBTT
T ss_pred E-EeccCCCCceE----------EEecCCccc--ccCCCCeEEEEecCCCce--------------------eeeecCCC
Confidence 1 25555432221 23333 444 889999999999754433 233443
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 451 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 451 ~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
|...+..++|+|||++||+|+ ||.+ +||+++
T Consensus 351 ~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 351 AAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 567788889999999999998 8999 999864
No 56
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.5e-27 Score=261.27 Aligned_cols=236 Identities=14% Similarity=0.109 Sum_probs=169.7
Q ss_pred cccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceecCCCC-----cEE-EEEcCCCCEEEEEecCCeEE
Q 003356 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGD-----AVC-ASIAPEQQILAVGTRRGVVE 281 (827)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~-va~sp~~~lla~g~~dg~v~ 281 (827)
...|.+++ ++|||+.+++++.++++++|+....-....|.. .+. ++|||||++||+|+.||+|+
T Consensus 85 ~~~V~~va----------wSPdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 85 VCYPRVCK----------PSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SCCEEEEE----------ECSSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred CCcEEEEE----------ECCCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 44576655 778999999999999999998433111122443 366 99999999999999999999
Q ss_pred EEEcCCCCcc-------eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee---EEEecccccc
Q 003356 282 LYDLAESASL-------IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL---MSTIRQISLS 351 (827)
Q Consensus 282 vw~~~~~~~~-------~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l---~~tl~~~~~~ 351 (827)
+||+.+ +.. +.+++.. ..+|.+.|.+++||||| +|+++.|++|++|++.++.+ ..++..++..
T Consensus 155 IWd~~~-~~l~~~~~i~l~ti~~~----~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 155 FFSIRK-NSENTPEFYFESSIRLS----DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp EEECCC-CTTTCCCCEEEEEEECS----CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred EEECCC-Cccccccceeeeeeecc----cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 999987 432 4565431 12388899999999999 88899999999999998874 3567533367
Q ss_pred ceeeeeecCCCCCCccceeecc--eeEEEccCCceEEEEecCCcceE--EEE--ec-ceeeeecccCCCeeeeEEEEcCC
Q 003356 352 SISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERV--LIF--SF-GKCCLNRGVSGMTYARQVIYGED 424 (827)
Q Consensus 352 ~v~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~~~v--~~~--~~-~~~~~s~~~d~~~~~w~~~~~~~ 424 (827)
.|.+++|+ + ..+++++ ++++|+..++++.....+|...+ +.| +. ++.+++++.||+ ++|...
T Consensus 228 ~V~svaFs--g----~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---- 296 (588)
T 2j04_A 228 KITDLKIV--D----YKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---- 296 (588)
T ss_dssp CCCCEEEE--T----TEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----
T ss_pred cEEEEEEE--C----CEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----
Confidence 89999998 4 5666555 89999999988855554788877 466 55 678889999999 998853
Q ss_pred eEEEEecCCC-------CcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeC
Q 003356 425 RLLVVQSEDT-------DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (827)
Q Consensus 425 ~~~~~~~~d~-------~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~ 472 (827)
.+- +..... ...+|+...-+.....++..|.+++|||||+.+|++++
T Consensus 297 ~~~-~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ELH-VTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SEE-EECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred cEE-ECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 121 222211 12245321001112233567999999999999999874
No 57
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5e-25 Score=240.70 Aligned_cols=293 Identities=14% Similarity=0.165 Sum_probs=203.0
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEE--eecCCC
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNK 143 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d~~ 143 (827)
+.+.+.+++|+|||++||+++.||.|++|++..+..... +.++...|.+ +.++++
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------------------~~~h~~~v~~~~~~~~~~ 87 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-----------------------LDGHTGTIWSIDVDCFTK 87 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE-----------------------ECCCSSCEEEEEECTTSS
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh-----------------------hhhcCCcEEEEEEcCCCC
Confidence 347789999999999999999999999999754321111 1233344544 456678
Q ss_pred eEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceE
Q 003356 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (827)
Q Consensus 144 ~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (827)
.+++++.||.|++|+..... ... . ......+.++.
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~--~~~------------~-----------------------~~~~~~v~~~~-------- 122 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQ--CVA------------T-----------------------WKSPVPVKRVE-------- 122 (369)
T ss_dssp EEEEEETTTEEEEEETTTCC--EEE------------E-----------------------EECSSCEEEEE--------
T ss_pred EEEEEeCCCeEEEEECCCCc--EEE------------E-----------------------eecCCCeEEEE--------
Confidence 99999999999986654221 110 0 01233466666
Q ss_pred EEEEeCCcEEEEeecc-----Cccccceeeccce--------------ecCCCC--cEE-EEEcCCCCEEEEEecCCeEE
Q 003356 224 FVLYSNGQLMSCSVSK-----KGLKLAEFIKIDK--------------ELGSGD--AVC-ASIAPEQQILAVGTRRGVVE 281 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~-----~~~~~~~~~~~~~--------------~~~h~~--~v~-va~sp~~~lla~g~~dg~v~ 281 (827)
++++|+.++++..+ +.+.+|+...... ...|.. .+. ++|+|++++|++|+.||.|+
T Consensus 123 --~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 200 (369)
T 3zwl_B 123 --FSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKIS 200 (369)
T ss_dssp --ECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEE
T ss_pred --EccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEE
Confidence 55566666666555 6666666554321 123433 555 99999999999999999999
Q ss_pred EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCC
Q 003356 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (827)
Q Consensus 282 vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (827)
+||+.+....+..+.. |.+.|.+++|+|||.+|++++.|+.|++||+.+++....+.. ...+.+++|+|+
T Consensus 201 i~d~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~ 270 (369)
T 3zwl_B 201 KYDVSNNYEYVDSIDL--------HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET--DCPLNTAVITPL 270 (369)
T ss_dssp EEETTTTTEEEEEEEC--------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSCEEEEEECSS
T ss_pred EEECCCCcEeEEEEec--------CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC--CCCceeEEecCC
Confidence 9999874566777777 999999999999999999999999999999999988888763 456888888888
Q ss_pred CCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEE
Q 003356 362 QDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (827)
Q Consensus 362 ~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~ 441 (827)
+ ..++.+... ....++... .......+++|+...+..
T Consensus 271 ~----~~l~~~~~~----------------~~~~~~~~~------~~~~~~~i~~~d~~~~~~----------------- 307 (369)
T 3zwl_B 271 K----EFIILGGGQ----------------EAKDVTTTS------ANEGKFEARFYHKIFEEE----------------- 307 (369)
T ss_dssp S----SEEEEEECC----------------C-------------------CEEEEEETTTCCE-----------------
T ss_pred C----ceEEEeecC----------------CCceEEEEe------cCCCcceeEEEecCCCcc-----------------
Confidence 7 555433210 000000000 001111344555322222
Q ss_pred eeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
...+.+|..+|.+++|+|||++|++|+.||.+ +|++.++.
T Consensus 308 ---~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 308 ---IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp ---EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred ---hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 34566788999999999999999999999999 99998764
No 58
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.94 E-value=4.6e-25 Score=240.45 Aligned_cols=279 Identities=14% Similarity=0.121 Sum_probs=203.2
Q ss_pred cCcccEEEE-----cC-CccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--
Q 003356 67 EGENLQAVW-----SP-DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-- 138 (827)
Q Consensus 67 ~G~~~~v~w-----SP-Dg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-- 138 (827)
.+.+.+++| +| |+++||+++.||+|++|++......... +.+ ...+.++...|.++
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~------~~~----------~~~l~~h~~~V~~~~~ 84 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF------GIP----------HKALTGHNHFVSDLAL 84 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS------EEE----------EEEECCCSSCEEEEEE
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc------ccc----------cchhccCCCceEEEEE
Confidence 467889999 77 9999999999999999998643210000 000 01134455566555
Q ss_pred ecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcC
Q 003356 139 VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL 218 (827)
Q Consensus 139 ~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 218 (827)
.+++..+++++.|+.+++|+... .... ..+..+...|.+++
T Consensus 85 ~~~~~~l~s~s~D~~v~lwd~~~--~~~~----------------------------------~~~~~h~~~v~~v~--- 125 (343)
T 2xzm_R 85 SQENCFAISSSWDKTLRLWDLRT--GTTY----------------------------------KRFVGHQSEVYSVA--- 125 (343)
T ss_dssp CSSTTEEEEEETTSEEEEEETTS--SCEE----------------------------------EEEECCCSCEEEEE---
T ss_pred CCCCCEEEEEcCCCcEEEEECCC--CcEE----------------------------------EEEcCCCCcEEEEE---
Confidence 56678899999999999865432 1111 01123445566655
Q ss_pred CcceEEEEEeCCcEEEEeeccCccccceeecccee-----cCCCCcEE-EEEcCCC----------CEEEEEecCCeEEE
Q 003356 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQ----------QILAVGTRRGVVEL 282 (827)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~-va~sp~~----------~lla~g~~dg~v~v 282 (827)
++|||+.+++++.|+++++|+....... .+|...+. ++|+|++ .++++|+.||+|++
T Consensus 126 -------~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 198 (343)
T 2xzm_R 126 -------FSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKV 198 (343)
T ss_dssp -------ECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEE
T ss_pred -------ECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEE
Confidence 7889999999999999999997632221 36777777 9999987 79999999999999
Q ss_pred EEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec-cCCeeEEEeccccccceeeeeecCC
Q 003356 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV-SGCRLMSTIRQISLSSISSPIVKPN 361 (827)
Q Consensus 283 w~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~-~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (827)
||.. .+....+.. |.++|.+++|+|||++||+|+.||+|++||+ ........+.. ...|.+++|+|+
T Consensus 199 wd~~--~~~~~~~~~--------h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~ 266 (343)
T 2xzm_R 199 WNTN--FQIRYTFKA--------HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA--GSTINQIAFNPK 266 (343)
T ss_dssp EETT--TEEEEEEEC--------CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSS
T ss_pred EcCC--CceeEEEcC--------ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC--CCcEEEEEECCC
Confidence 9943 456667777 9999999999999999999999999999999 44444444432 246999999999
Q ss_pred CCCCccceeecc--eeEEEccCCceEEE--Eec-----------CCcceEEE--Eec-ceeeeecccCCCeeeeEEEEcC
Q 003356 362 QDCKYEPLMSGT--SMMQWDEYGYRLYA--IEE-----------GSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGE 423 (827)
Q Consensus 362 ~~~~~~~l~sg~--~i~~W~~~~~~l~~--~~~-----------~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~ 423 (827)
+ ..++.|. .+++|+..+.+... .+. +|...+.. |++ ++.+++|+.|+++++|++..+.
T Consensus 267 ~----~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 267 L----QWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp S----CEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred C----CEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 7 6666554 88999987655332 222 46666754 444 8899999999999999986643
No 59
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=7.5e-26 Score=243.74 Aligned_cols=248 Identities=15% Similarity=0.116 Sum_probs=191.3
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccc-----eecCCCCcEE-EEEcC--CCCEEEEEec
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAVC-ASIAP--EQQILAVGTR 276 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~-va~sp--~~~lla~g~~ 276 (827)
..+...|.++. +++||+.+++++.|+++++|+...+. .+.+|.+.|. ++|+| ++++||+|+.
T Consensus 10 ~~H~~~V~~v~----------~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~ 79 (316)
T 3bg1_A 10 TSHEDMIHDAQ----------MDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY 79 (316)
T ss_dssp ----CCEEEEE----------ECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET
T ss_pred ccccCeEEEee----------EcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC
Confidence 45566677766 77899999999999999999987543 2378999988 99986 4899999999
Q ss_pred CCeEEEEEcCCCCc--ceEEEEeecCCCCCCCCCCeEEEEECCC--CCEEEEEEcCCcEEEEeccCCee---EEEecccc
Q 003356 277 RGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCRL---MSTIRQIS 349 (827)
Q Consensus 277 dg~v~vw~~~~~~~--~~~~l~~~~~~~~~~h~~~V~~l~~spD--g~~Lasg~~Dg~v~vWs~~~~~l---~~tl~~~~ 349 (827)
|++|++||+.+ +. ....+.+ |.+.|.+++|+|| |.+||+|+.|++|++|++.++.. ...+.+|
T Consensus 80 D~~v~iWd~~~-~~~~~~~~~~~--------h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h- 149 (316)
T 3bg1_A 80 DRKVIIWREEN-GTWEKSHEHAG--------HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH- 149 (316)
T ss_dssp TSCEEEECCSS-SCCCEEEEECC--------CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS-
T ss_pred CCEEEEEECCC-CcceEEEEccC--------CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc-
Confidence 99999999987 43 4455555 9999999999998 88999999999999999987532 2344455
Q ss_pred ccceeeeeecCCCCC-------------Cccceeecc---eeEEEccCCc---eEEEEecCCcceEEEEec---c----e
Q 003356 350 LSSISSPIVKPNQDC-------------KYEPLMSGT---SMMQWDEYGY---RLYAIEEGSSERVLIFSF---G----K 403 (827)
Q Consensus 350 ~~~v~s~~~sp~~~~-------------~~~~l~sg~---~i~~W~~~~~---~l~~~~~~~~~~v~~~~~---~----~ 403 (827)
...+.+++|+|+... ....+++|+ ++++|+..+. ++...+.+|...|..+.| + +
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 667999999987310 014677776 8999998754 466677889999976666 2 5
Q ss_pred eeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcC-
Q 003356 404 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR- 481 (827)
Q Consensus 404 ~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~- 481 (827)
.+++++.|+++++|++...... .| .+..+..|..+|.+++|+|+|++||+|+.||.+ +|+..
T Consensus 230 ~las~s~D~~v~iw~~~~~~~~------------~~----~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 230 TIASCSQDGRVFIWTCDDASSN------------TW----SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEEETTCEEEEEECSSTTCC------------CC----BCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred eEEEEcCCCeEEEEEccCcccc------------ch----hhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 7999999999999997542110 00 022345678899999999999999999999999 99985
Q ss_pred CCeEEee
Q 003356 482 QKKWRVF 488 (827)
Q Consensus 482 t~~w~~f 488 (827)
.+.|...
T Consensus 294 ~g~~~~~ 300 (316)
T 3bg1_A 294 DGQWVCI 300 (316)
T ss_dssp TSCEEEE
T ss_pred CCcEEEe
Confidence 5677654
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.7e-26 Score=263.62 Aligned_cols=318 Identities=8% Similarity=0.016 Sum_probs=200.3
Q ss_pred ecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhh-hcCcccEEEEcCC------ccEEEEEecCcEEEEEEEEecC
Q 003356 29 VNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQ-REGENLQAVWSPD------TKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 29 pdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~-~~G~~~~v~wSPD------g~~lav~t~dg~l~l~~v~~~~ 100 (827)
|++++||++ .+++|+||+.. .+........ .+. +.|.+.+++|+|+ +.+||+++.||+|++|++..+.
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~-~~~~~~~~~~---~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMN-TSTLHCVKVQ---TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp -----------CEEEEEEEEE-TTTCCEEEEE---EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred hhhhhhccCCCCceEEEEEcc-CCCCCceEEE---EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 344444444 35689999984 4322111100 012 2478899999997 5799999999999999996443
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecC-CCeEEEEecCCcEEEEecCCccCcceeecccCCCCccc
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d-~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i 179 (827)
.... .... + ......+.++...|.+++.. +..|++|+.||.|++|+....... .
T Consensus 247 ~~~~--------~~~~-~---~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~-~------------ 301 (524)
T 2j04_B 247 TDVH--------VFKM-C---EKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVP-S------------ 301 (524)
T ss_dssp SSSS--------EEEC-C---CSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSC-S------------
T ss_pred cccc--------ccee-e---cCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCc-e------------
Confidence 1100 0000 0 00001234455677777643 367999999999998655421100 0
Q ss_pred ceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCC-cEEEEeeccCccccceeeccce---ecC
Q 003356 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKIDK---ELG 255 (827)
Q Consensus 180 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG-~~~~~~~~~~~~~~~~~~~~~~---~~~ 255 (827)
..+..+...|.+++ .+++++| +++++++.|+++++||...++. +.+
T Consensus 302 ----------------------~~~~~H~~~V~sv~--------~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~ 351 (524)
T 2j04_B 302 ----------------------FYDQVHDSYILSVS--------TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS 351 (524)
T ss_dssp ----------------------EEEECSSSCEEEEE--------EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE
T ss_pred ----------------------EEeecccccEEEEE--------EEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc
Confidence 01123445566653 2356788 8999999999999999876543 234
Q ss_pred CCC--cE-EEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEE
Q 003356 256 SGD--AV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 256 h~~--~v-~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
|.. .+ +++|+|+++.+|+|+.|++|++||+.. +..+.++.+ |.+.|++|+|||||..||+|+.||+|+
T Consensus 352 ~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~g--------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~ 422 (524)
T 2j04_B 352 RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVS--------RETTITAIGVSRLHPMVLAGSADGSLI 422 (524)
T ss_dssp ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEE--------CSSCEEEEECCSSCCBCEEEETTTEEE
T ss_pred ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeec--------CCCceEEEEeCCCCCeEEEEECCCEEE
Confidence 543 24 499999999999999999999999988 777788888 999999999999999999999999999
Q ss_pred EEeccCCeeEEEecc----ccccceeeeeecCCCCCCccceeecceeEEEccC-CceEEEEecCCcceE--EEEec-c--
Q 003356 333 VWSVSGCRLMSTIRQ----ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEY-GYRLYAIEEGSSERV--LIFSF-G-- 402 (827)
Q Consensus 333 vWs~~~~~l~~tl~~----~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~-~~~l~~~~~~~~~~v--~~~~~-~-- 402 (827)
+|++.++ ++..++. +....+.+++|+|++ ..+.......+|... ++.+...+.+|...| ++|++ +
T Consensus 423 lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g----~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~ 497 (524)
T 2j04_B 423 ITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKD----DKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAG 497 (524)
T ss_dssp CCBSCSS-TTTCC------CCCCEEEECBCCSSS----CEEEECCCCCCCC-------------CCCSCCCEEECCSTTT
T ss_pred EEechHh-hccccccCccceeeeEEEEeccCCCC----CeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCc
Confidence 9998765 3322211 112246789999988 422111112223222 355666777888888 45555 3
Q ss_pred -eeeeecccCCCeeeeEE
Q 003356 403 -KCCLNRGVSGMTYARQV 419 (827)
Q Consensus 403 -~~~~s~~~d~~~~~w~~ 419 (827)
..+++|+.|+++++|.+
T Consensus 498 ~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 498 GKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp TTEEEEECTTSEEEEEEC
T ss_pred cHHHHhhccCceEEEEEc
Confidence 37899999999999985
No 61
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.94 E-value=9.5e-25 Score=236.22 Aligned_cols=284 Identities=14% Similarity=0.171 Sum_probs=186.1
Q ss_pred cccccCceeecCCCCCCCCCc--eEEEEEec-ceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcC
Q 003356 2 YMAYGWPQVIPLEQGLCPSSQ--QIIYFKVN-NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP 77 (827)
Q Consensus 2 y~~~gwp~~~~~~~~~~~~~~--~vv~fspd-g~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSP 77 (827)
||..-.++.+.+.....++.. ..|+|+|+ +++||+++ |++|+||++.+.........++.. .+.+.+.+++|+|
T Consensus 19 ~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~--~h~~~V~~~~~s~ 96 (340)
T 4aow_A 19 YFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVISS 96 (340)
T ss_dssp -------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC--CCSSCEEEEEECT
T ss_pred EEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe--CCCCCEEEEEECC
Confidence 556666666554322233444 44899998 68999884 789999998532221111111111 1246788999999
Q ss_pred CccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEE
Q 003356 78 DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSI 157 (827)
Q Consensus 78 Dg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~ 157 (827)
||++|++++.||.+++|+........... ..........+.+++..+++++.|+.+++|
T Consensus 97 dg~~l~s~~~d~~i~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFV---------------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEE---------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCCEEEEEcccccceEEeecccceeeeec---------------------CCCCceeEEEEeecCccceeecCCCeEEEE
Confidence 99999999999999999975332111000 111122334556778889999999999885
Q ss_pred ecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEee
Q 003356 158 SWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV 237 (827)
Q Consensus 158 ~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~ 237 (827)
+.. ...... .....+...+..+.+++. +.+.++++++
T Consensus 156 d~~--~~~~~~---------------------------------~~~~~~~~~v~~~~~~~~--------~~~~~~~s~~ 192 (340)
T 4aow_A 156 NTL--GVCKYT---------------------------------VQDESHSEWVSCVRFSPN--------SSNPIIVSCG 192 (340)
T ss_dssp CTT--SCEEEE---------------------------------ECSSSCSSCEEEEEECSC--------SSSCEEEEEE
T ss_pred EeC--CCceEE---------------------------------EEeccccCcccceEEccC--------CCCcEEEEEc
Confidence 432 221111 111223444555553332 2234666777
Q ss_pred ccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEE
Q 003356 238 SKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (827)
Q Consensus 238 ~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l 313 (827)
.++++++|+....+.. .+|...+. ++|+|++++||+|+.||+|++||+.+ .+.+..+.. ...|.++
T Consensus 193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~---------~~~v~~~ 262 (340)
T 4aow_A 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLDG---------GDIINAL 262 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEEC---------SSCEEEE
T ss_pred CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-CceeeeecC---------CceEEee
Confidence 8888889987765443 67888887 99999999999999999999999988 777766654 5689999
Q ss_pred EECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccc--------cccceeeeeecCCC
Q 003356 314 AWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI--------SLSSISSPIVKPNQ 362 (827)
Q Consensus 314 ~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~--------~~~~v~s~~~sp~~ 362 (827)
+|+|++.++++ +.|+.|++||+.++.++.++... +...|++++|+|++
T Consensus 263 ~~~~~~~~~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 263 CFSPNRYWLCA-ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp EECSSSSEEEE-EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred ecCCCCceeec-cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence 99999876655 56799999999998887776532 13456666666665
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.94 E-value=3.4e-25 Score=247.70 Aligned_cols=306 Identities=11% Similarity=0.094 Sum_probs=225.0
Q ss_pred EEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
+.++|||+.+++++.++.+++|+....+.. ..| ..++ .+++|++++||+|+.||+|++||+.+ +.....+..
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~-- 137 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF-NLQREIDQA-- 137 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS-CEEEEETTS--
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC-cceeeeccc--
Confidence 458899999999999999999998765432 333 4455 68999999999999999999999987 665555555
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeE
Q 003356 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~ 376 (827)
|.+.|++++|+|||++|++|+.|+.|++||+.+++...++.+| ...|.+++|+|++ ..+++++ +++
T Consensus 138 ------h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 138 ------HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-RATVTDIAIIDRG----RNVLSASLDGTIR 206 (420)
T ss_dssp ------SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-SSCEEEEEEETTT----TEEEEEETTSCEE
T ss_pred ------ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-CCcEEEEEEcCCC----CEEEEEcCCCcEE
Confidence 9999999999999999999999999999999999989999887 6789999999998 7888776 799
Q ss_pred EEccCCceEEEEecC---CcceEEEE-----------------------ec-ceeeeecccCCCeeeeEEEEcCCeEEEE
Q 003356 377 QWDEYGYRLYAIEEG---SSERVLIF-----------------------SF-GKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (827)
Q Consensus 377 ~W~~~~~~l~~~~~~---~~~~v~~~-----------------------~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~ 429 (827)
+|+..+++....+.. +...+..+ ++ ++.+++++.|+.+++|++..+...
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---- 282 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT---- 282 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE----
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee----
Confidence 999999998888764 33333222 23 678899999999999997544331
Q ss_pred ecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCC-EEEEEeCCceE-EEEcCCCeE--EeeCCccceEEEEEEEEEEe
Q 003356 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKW--RVFGDITQEQKIQSKGLLWL 505 (827)
Q Consensus 430 ~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~-~lavag~dg~i-iwd~~t~~w--~~f~~~~~e~~~~v~gl~W~ 505 (827)
......|..+|.+++|+|+|+ ++++|+.||.+ +||+.+++. ..+.. .....+..+.|.
T Consensus 283 ---------------~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---~~~~~v~~~~~~ 344 (420)
T 3vl1_A 283 ---------------IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI---NEGTPINNVYFA 344 (420)
T ss_dssp ---------------EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE---STTSCEEEEEEE
T ss_pred ---------------EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc---cCCCCceEEEeC
Confidence 122335788999999999999 99999999999 999998742 22210 011235566666
Q ss_pred CC-EEEEEEEeeCCCcEEEEEeeCCCC-Cc--------cceEEEEecCCccEEEEccCC---EEEEEEcCceEEEEEEE
Q 003356 506 GK-IIVVCNYIDSSNTYELLFYPRYHL-DQ--------SSLLCRKSLLAKPIVMDVYED---YILVTYRPFDVHIFHVK 571 (827)
Q Consensus 506 ~~-~li~~~~~~~~~~~~lrly~~~~l-~~--------~~~~~~~~l~~~~~~l~~~~~---~llV~~~~~~i~l~~~~ 571 (827)
.. .++++ +.+..+++|..... .. ...+....-.-..+.+++.+. .++++..++.+.+|.++
T Consensus 345 ~~~~l~s~-----~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 345 AGALFVSS-----GFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp TTEEEEEE-----TTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred CCCEEEEe-----cCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 55 44444 34578999987521 11 111111111112244555555 56666778889999753
No 63
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=1.8e-24 Score=235.49 Aligned_cols=306 Identities=11% Similarity=0.047 Sum_probs=202.1
Q ss_pred hcCcccEEEEcCCccEEE-EEec---CcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--e
Q 003356 66 REGENLQAVWSPDTKLIA-VVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--V 139 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~la-v~t~---dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~ 139 (827)
+.+.+.+++|+||++.++ +++. ||.|++|++..+...... ..++...|.++ .
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~----------------------~~~~~~~v~~~~~~ 74 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR----------------------EIEKAKPIKCGTFG 74 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE----------------------EEEESSCEEEEECT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee----------------------eecccCcEEEEEEc
Confidence 346789999999996555 5554 899999999744311000 01223345454 4
Q ss_pred cC---CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEE
Q 003356 140 SD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (827)
Q Consensus 140 ~d---~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 216 (827)
++ +..+++++.||.+++|+........ ..+..+...|.++.|
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------------------------~~~~~~~~~v~~~~~ 119 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPV-----------------------------------YSVKGHKEIINAIDG 119 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSSCS-----------------------------------EEECCCSSCEEEEEE
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCccE-----------------------------------EEEEecccceEEEee
Confidence 55 5789999999999986554322111 112345566777776
Q ss_pred cCCcceEEEEEeCCcEEEEeeccCccccceeeccce-e---cCCC----CcEE-EE----EcCCCCEEEEEecCCeEEEE
Q 003356 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-E---LGSG----DAVC-AS----IAPEQQILAVGTRRGVVELY 283 (827)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~-~---~~h~----~~v~-va----~sp~~~lla~g~~dg~v~vw 283 (827)
.+.. .+++||+.+++++.++++++|+....+. . ..|. ..+. ++ |+|+++++++|+.||.|++|
T Consensus 120 ~~~~----~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 120 IGGL----GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF 195 (357)
T ss_dssp ESGG----GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred cccc----ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence 5432 2578999999999999999999876542 1 2222 2444 66 78999999999999999999
Q ss_pred EcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC---CCCEEEEEEcCCcEEEEeccCCeeEEEec-----cccccceee
Q 003356 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAFAVGWKSRGLTVWSVSGCRLMSTIR-----QISLSSISS 355 (827)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp---Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~-----~~~~~~v~s 355 (827)
|+.+ .+... ... |.+.|.+++|+| ++..|++|+.||.|++||+.++.....+. +| ...+.+
T Consensus 196 d~~~-~~~~~-~~~--------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~ 264 (357)
T 3i2n_A 196 DLRN-MALRW-ETN--------IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH-KSTVWQ 264 (357)
T ss_dssp ETTT-TEEEE-EEE--------CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC-SSCEEE
T ss_pred ECcc-Cceee-ecC--------CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC-cCCEEE
Confidence 9987 55433 344 889999999999 99999999999999999998765433332 33 334444
Q ss_pred eeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCC
Q 003356 356 PIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (827)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~ 435 (827)
++|+|++ . ..+++++.|+.+++|++..+...... ......
T Consensus 265 ~~~~~~~----~-----------------------------------~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~g~~ 304 (357)
T 3i2n_A 265 VRHLPQN----R-----------------------------------ELFLTAGGAGGLHLWKYEYPIQRSKK-DSEGIE 304 (357)
T ss_dssp EEEETTE----E-----------------------------------EEEEEEETTSEEEEEEEECCSCC--C-CTTSCC
T ss_pred EEECCCC----C-----------------------------------cEEEEEeCCCcEEEeecCCCcccccc-cCCCCc
Confidence 4444443 1 14566777777777777654432100 000000
Q ss_pred cceEEEeeeceeeccCCCcEEEEEEcCCCCEEE-EEeCCceE-EEEcCCC
Q 003356 436 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLA-VAGLHGLI-LYDIRQK 483 (827)
Q Consensus 436 ~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~la-vag~dg~i-iwd~~t~ 483 (827)
...-...+....+.+|..+|.+++|+|+|++++ +|+.||.+ +||+.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 305 MGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 000011223456778999999999999999999 79999999 9999764
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.94 E-value=2.3e-24 Score=244.78 Aligned_cols=310 Identities=13% Similarity=0.134 Sum_probs=238.0
Q ss_pred ccccce-EEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCC
Q 003356 129 AEKGLS-VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (827)
Q Consensus 129 ~~~~~~-v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 207 (827)
.++... +.|+..+++.+++|+.||.|++|+.... ... ..+..+
T Consensus 118 ~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~--~~~----------------------------------~~~~~h 161 (464)
T 3v7d_B 118 RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINK--KFL----------------------------------LQLSGH 161 (464)
T ss_dssp ECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTT--EEE----------------------------------EEECCC
T ss_pred cCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCC--cEE----------------------------------EEEeCC
Confidence 344444 5788889999999999999999654322 111 112345
Q ss_pred cccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEc--CCCCEEEEEecCCeEE
Q 003356 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIA--PEQQILAVGTRRGVVE 281 (827)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~s--p~~~lla~g~~dg~v~ 281 (827)
...|.++. +++++ .+++++.|+++++|+..+++.. .+|...+. ++|+ ++++++++|+.||+|+
T Consensus 162 ~~~V~~l~----------~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~ 230 (464)
T 3v7d_B 162 DGGVWALK----------YAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230 (464)
T ss_dssp SSCEEEEE----------ECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEE
T ss_pred CcCEEEEE----------EcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEE
Confidence 56677766 45566 7788888999999998766543 67888887 8888 6889999999999999
Q ss_pred EEEcCCCCcc-----------------------eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 282 LYDLAESASL-----------------------IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 282 vw~~~~~~~~-----------------------~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
+||+.+ ... ...+. +|.+.|.++ +|++.+|++|+.||.|++||+.+
T Consensus 231 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~ 299 (464)
T 3v7d_B 231 VWKLPK-ESSVPDHGEEHDYPLVFHTPEENPYFVGVLR--------GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQ 299 (464)
T ss_dssp EEECCC-CCCC------CCSSEEESCGGGCTTEEEEEC--------CCSSCEEEE--EEETTEEEEEETTSCEEEEETTT
T ss_pred EeeCCC-CcccccccccCCcceEeeccCCCeEEEEEcc--------CccceEEEE--cCCCCEEEEEeCCCeEEEEECCC
Confidence 999987 332 22333 388888887 68899999999999999999999
Q ss_pred CeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCe
Q 003356 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMT 414 (827)
Q Consensus 339 ~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~ 414 (827)
++++.++.+| ...+.+++|+|++ ..+++|+ .+.+|+..+++++..+.+|...+..+.+ ++.+++++.|+++
T Consensus 300 ~~~~~~~~~~-~~~v~~~~~~~~~----~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v 374 (464)
T 3v7d_B 300 MKCLYILSGH-TDRIYSTIYDHER----KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSI 374 (464)
T ss_dssp TEEEEEECCC-SSCEEEEEEETTT----TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEE
T ss_pred CcEEEEecCC-CCCEEEEEEcCCC----CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcE
Confidence 9999999887 6789999999998 7888876 8999999999999999999999988888 8899999999999
Q ss_pred eeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccc
Q 003356 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQ 493 (827)
Q Consensus 415 ~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~ 493 (827)
++|++...... . ...+...+..++|+|+|+++++|+ ||.+ +||+.+++...-....
T Consensus 375 ~vwd~~~~~~~--------------------~-~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~- 431 (464)
T 3v7d_B 375 RGWDANDYSRK--------------------F-SYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILK- 431 (464)
T ss_dssp EEEETTTCCEE--------------------E-EEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTT-
T ss_pred EEEECCCCcee--------------------e-eecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhcc-
Confidence 99997543321 1 123556778899999999999999 8889 9999998753211111
Q ss_pred eEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEee
Q 003356 494 EQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYP 527 (827)
Q Consensus 494 e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~ 527 (827)
....|..+.|.++.+++++.. ++..-+.++.
T Consensus 432 -~~~~v~~v~~~~~~l~~~~~~--~g~~~i~~ld 462 (464)
T 3v7d_B 432 -DADQIWSVNFKGKTLVAAVEK--DGQSFLEILD 462 (464)
T ss_dssp -TCSEEEEEEEETTEEEEEEEE--TTEEEEEEEE
T ss_pred -CCCcEEEEEecCCEEEEEEEe--CCeEEEEEee
Confidence 233578899999988888554 3444444443
No 65
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.94 E-value=2e-24 Score=231.67 Aligned_cols=273 Identities=18% Similarity=0.250 Sum_probs=208.3
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEE
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~ 332 (827)
.+|.+.+. ++|+|++++||+|+.||+|++|++.+ ++....+.+ |..+|.+++|+|||++|++|+.|+.|+
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISG--------HKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECC--------CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC-cccchhhcc--------CCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 68888887 99999999999999999999999987 777777777 999999999999999999999999999
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec---ceeee
Q 003356 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL 406 (827)
Q Consensus 333 vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~ 406 (827)
+||+.+++++.++.+| ...|.+++|+|++ ..+++|+ .+++|+..+++....+..|...+..+.+ ++.++
T Consensus 91 vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGH-SNYVFCCNFNPQS----NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp EEETTTCCEEEEEECC-SSCEEEEEECSSS----SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 9999999999999887 6789999999998 8888876 8999999999998888888888865555 78899
Q ss_pred ecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeecee-eccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS-YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~-~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
+++.|+.+++|++..+.. ... ...+..++..++|+|+|+++++++.||.+ +||+.+++
T Consensus 166 ~~~~d~~i~~wd~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQC--------------------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 225 (312)
T ss_dssp EEETTSCEEEEETTTCCE--------------------EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE
T ss_pred EEeCCCcEEEEECCCCce--------------------eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999999999999654332 122 23566789999999999999999999999 99999886
Q ss_pred EE-eeCCccceEEEEEEEEEE--e-CCEEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEe-cCCccEEEE--ccCCEEE
Q 003356 485 WR-VFGDITQEQKIQSKGLLW--L-GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS-LLAKPIVMD--VYEDYIL 557 (827)
Q Consensus 485 w~-~f~~~~~e~~~~v~gl~W--~-~~~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~-l~~~~~~l~--~~~~~ll 557 (827)
.. .+.....+ ..+....+ . +..+++| ..+..+++|... ...++.... +...+..+. +.+..++
T Consensus 226 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~sg-----~~dg~i~vwd~~---~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 295 (312)
T 4ery_A 226 CLKTYTGHKNE--KYCIFANFSVTGGKWIVSG-----SEDNLVYIWNLQ---TKEIVQKLQGHTDVVISTACHPTENIIA 295 (312)
T ss_dssp EEEEECSSCCS--SSCCCEEEECSSSCEEEEC-----CTTSCEEEEETT---TCCEEEEECCCSSCEEEEEECSSSSEEE
T ss_pred EEEEEEecCCc--eEEEEEEEEeCCCcEEEEE-----CCCCEEEEEECC---CchhhhhhhccCCcEEEEeecCcCCceE
Confidence 32 22211111 11111222 2 3355554 234579999875 222333322 223333343 4455665
Q ss_pred EEE--cCceEEEEEE
Q 003356 558 VTY--RPFDVHIFHV 570 (827)
Q Consensus 558 V~~--~~~~i~l~~~ 570 (827)
.++ .|+.+++|+.
T Consensus 296 s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 296 SAALENDKTIKLWKS 310 (312)
T ss_dssp EEECTTTCCEEEEEC
T ss_pred EEEccCCccEEEecC
Confidence 544 4889999974
No 66
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.93 E-value=1.8e-24 Score=243.84 Aligned_cols=344 Identities=13% Similarity=0.126 Sum_probs=212.2
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCcee-----------EEEEEEeCh------HhhhhcCcccEEEEcCCc--cE
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKV-----------RLGKYKRDS------ESVQREGENLQAVWSPDT--KL 81 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~-----------~l~~~~r~~------~s~~~~G~~~~v~wSPDg--~~ 81 (827)
...++|||||++||++ .++.|+||+.. ... .+..+.... .++...+.+.+++|+|++ ..
T Consensus 31 V~~v~~s~~g~~la~g~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~ 109 (447)
T 3dw8_B 31 ISTVEFNHSGELLATGDKGGRVVIFQQE-QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQ 109 (447)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEEC-C-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEec-CCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcce
Confidence 4558999999999998 47899999985 332 122222110 001112778999999999 89
Q ss_pred EEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCC
Q 003356 82 IAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKG 161 (827)
Q Consensus 82 lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~ 161 (827)
|++++.||+|++|++........... +..+.+.+.........-+- .+....|..
T Consensus 110 l~s~s~d~~i~iw~~~~~~~~~~~~~--------------------~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~ 164 (447)
T 3dw8_B 110 FLLSTNDKTIKLWKISERDKRPEGYN--------------------LKEEDGRYRDPTTVTTLRVP-----VFRPMDLMV 164 (447)
T ss_dssp EEEEECSSCEEEEEEEEEEEEEECCS--------------------CC--------CCCCCSCCCC-----EEEEEEEEE
T ss_pred EEEeCCCCeEEEEecccccCCcceec--------------------ccCccccccCcccccceEec-----cccchheee
Confidence 99999999999999975432110000 00000000000000000000 000000000
Q ss_pred ccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCc
Q 003356 162 EFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG 241 (827)
Q Consensus 162 ~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~ 241 (827)
.. . ........+...|.++. +++||+.++++ .|++
T Consensus 165 ~~-~---------------------------------~~~~~~~~h~~~v~~~~----------~~~~~~~l~s~-~d~~ 199 (447)
T 3dw8_B 165 EA-S---------------------------------PRRIFANAHTYHINSIS----------INSDYETYLSA-DDLR 199 (447)
T ss_dssp EE-E---------------------------------EEEEECSCCSSCCCEEE----------ECTTSSEEEEE-CSSE
T ss_pred ec-c---------------------------------ceEEeccCCCcceEEEE----------EcCCCCEEEEe-CCCe
Confidence 00 0 00011122344455544 77888888887 7888
Q ss_pred cccceeeccc-e----------ecCCCCcEE-EEEcCCC-CEEEEEecCCeEEEEEcCCCCcc----eEEEEeecCCCCC
Q 003356 242 LKLAEFIKID-K----------ELGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASL----IRTVSLYDWGYSM 304 (827)
Q Consensus 242 ~~~~~~~~~~-~----------~~~h~~~v~-va~sp~~-~lla~g~~dg~v~vw~~~~~~~~----~~~l~~~~~~~~~ 304 (827)
+++|+..... . ..+|...+. ++|+|++ ++||+|+.||+|++||+.+ +.. ...+..
T Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~------- 271 (447)
T 3dw8_B 200 INLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKLFEE------- 271 (447)
T ss_dssp EEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEEECC-------
T ss_pred EEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeEecc-------
Confidence 9999877322 1 247888787 9999998 9999999999999999987 554 566666
Q ss_pred CCCC------------CeEEEEECCCCCEEEEEEcCCcEEEEeccC-CeeEEEeccccccc---------------eeee
Q 003356 305 DDTG------------PVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSS---------------ISSP 356 (827)
Q Consensus 305 ~h~~------------~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~-~~l~~tl~~~~~~~---------------v~s~ 356 (827)
|.+ +|.+++|+|||++|++++. +.|++||+.. ++++.++.+|. .. +..+
T Consensus 272 -~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~ 348 (447)
T 3dw8_B 272 -PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE-YLRSKLCSLYENDCIFDKFEC 348 (447)
T ss_dssp -C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG-GGTTTHHHHHHTSGGGCCCCE
T ss_pred -CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc-cccccccccccccccccceEE
Confidence 554 8999999999999999999 9999999986 77888887762 11 2238
Q ss_pred eecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEE--EEecceeeeecccCCCeeeeEEEEcCCeEEEEec
Q 003356 357 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (827)
Q Consensus 357 ~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~--~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~ 431 (827)
+|+|++ ..+++|+ .+.+|+..+++.+.. ..+..... .....+.+..++... ...
T Consensus 349 ~~s~~~----~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------- 407 (447)
T 3dw8_B 349 CWNGSD----SVVMTGSYNNFFRMFDRNTKRDITL-EASRENNKPRTVLKPRKVCASGKRK---------KDE------- 407 (447)
T ss_dssp EECTTS----SEEEEECSTTEEEEEETTTCCEEEE-ECCSTTCCTTCBCCCCCEECSSCCC---------TTC-------
T ss_pred EECCCC----CEEEEeccCCEEEEEEcCCCcceee-eecccccccccccCCccccccCCcc---------ccc-------
Confidence 899998 7777776 788999988776533 23222110 000011111111000 000
Q ss_pred CCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEc
Q 003356 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480 (827)
Q Consensus 432 ~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~ 480 (827)
.......++.+|..++|+|+|.+||+|+.+++.+|+.
T Consensus 408 ------------~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 408 ------------ISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp ------------EEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred ------------ccccccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence 0111234566799999999999999999999778874
No 67
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.3e-25 Score=247.37 Aligned_cols=236 Identities=10% Similarity=0.109 Sum_probs=170.9
Q ss_pred cCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecCCCe
Q 003356 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKH 144 (827)
Q Consensus 67 ~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d~~~ 144 (827)
.+.+.+++|+|||++||+++.||.|++|++..+... ....+.++...|.++ +++++.
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~---------------------~~~~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWK---------------------HARTFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEE---------------------ECCCBCCCSSCEEEEEECTTTCC
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceE---------------------EEEEEecCCceEEEEEEeCCCCE
Confidence 367899999999999999999999999999743100 011123344455544 567789
Q ss_pred EEEEecCCcEEEEecCCcc-CcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceE
Q 003356 145 MLLGLSDGSLYSISWKGEF-YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (827)
Q Consensus 145 llv~t~dg~i~~~~w~~~~-~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (827)
|++++.||.+++|+.+... .... .....+...|.++.
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~----------------------------------~~~~~~~~~v~~~~-------- 107 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQT----------------------------------LVLLRLNRAATFVR-------- 107 (377)
T ss_dssp EEEEETTSSEEEC------CCCCE----------------------------------EECCCCSSCEEEEE--------
T ss_pred EEEEeCCCeEEEEEcCCCCceeee----------------------------------eEecccCCceEEEE--------
Confidence 9999999999985443222 0000 11223455676666
Q ss_pred EEEEeCCcEEEEeeccCccccceeeccce------ecC-CCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCC------
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK------ELG-SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA------ 289 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~------~~~-h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~------ 289 (827)
+++||+.+++++.++++++|+....+. +.+ |...+. ++|+|++++||+|+.||+|++||+....
T Consensus 108 --~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 108 --WSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp --CCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred --ECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 667788888888888899998876542 244 888887 9999999999999999999999986311
Q ss_pred -----------cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee----EEEecccccccee
Q 003356 290 -----------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISLSSIS 354 (827)
Q Consensus 290 -----------~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l----~~tl~~~~~~~v~ 354 (827)
..+..+ +|.+.|.+++|+|||++||+|+.||.|++||+.++.. +.++.+| ...+.
T Consensus 186 ~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~ 255 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY---------PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLR 255 (377)
T ss_dssp SCSSCSCCCEEEEEECC---------CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEE
T ss_pred ccccccccchhhhhhcc---------cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceE
Confidence 111111 4999999999999999999999999999999998876 7777777 67899
Q ss_pred eeeecCCCCCCccceeecc--eeEEEccC
Q 003356 355 SPIVKPNQDCKYEPLMSGT--SMMQWDEY 381 (827)
Q Consensus 355 s~~~sp~~~~~~~~l~sg~--~i~~W~~~ 381 (827)
+++|+|++ ..+++|. ..++|...
T Consensus 256 ~~~~s~~~----~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 256 SLLWANES----AIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EEEEEETT----EEEEEESSSSEEEECCC
T ss_pred EEEEcCCC----CEEEEEcCCcEEEEEeC
Confidence 99999998 7888776 55567654
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.93 E-value=7.7e-24 Score=235.92 Aligned_cols=273 Identities=14% Similarity=0.123 Sum_probs=211.7
Q ss_pred eEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEE
Q 003356 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (827)
Q Consensus 134 ~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (827)
.+.++..+++.+++++.||.|++|+.+... ... .....+...|.+
T Consensus 95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~--~~~---------------------------------~~~~~~~~~v~~ 139 (401)
T 4aez_A 95 YLNLLDWSNLNVVAVALERNVYVWNADSGS--VSA---------------------------------LAETDESTYVAS 139 (401)
T ss_dssp TCBCEEECTTSEEEEEETTEEEEEETTTCC--EEE---------------------------------EEECCTTCCEEE
T ss_pred eEEEEeecCCCEEEEECCCeEEEeeCCCCc--EeE---------------------------------eeecCCCCCEEE
Confidence 345677778889999999999986654321 110 001123445666
Q ss_pred EEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCC
Q 003356 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA 289 (827)
Q Consensus 214 i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~ 289 (827)
++ +++||+.++++..++.+++|+....+.. .+|...+. ++| +++++++|+.||+|++||+....
T Consensus 140 v~----------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~ 207 (401)
T 4aez_A 140 VK----------WSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN 207 (401)
T ss_dssp EE----------ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred EE----------ECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc
Confidence 65 6778888888888889999987765433 67888887 888 56799999999999999998645
Q ss_pred cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce
Q 003356 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (827)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l 369 (827)
.....+.. |.+.|.+++|+|||.+|++|+.|+.|++||+.++....++..| ...|.+++|+|++. ..+
T Consensus 208 ~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~---~ll 275 (401)
T 4aez_A 208 HQIGTLQG--------HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQS---NLL 275 (401)
T ss_dssp CEEEEEEC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEECTTST---TEE
T ss_pred ceeeEEcC--------CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC-cceEEEEEECCCCC---CEE
Confidence 66777777 9999999999999999999999999999999999888888877 67899999999772 344
Q ss_pred eec-----ceeEEEccCCceEEEEecCCcceEEEEe--c-ceeeee--cccCCCeeeeEEEEcCCeEEEEecCCCCcceE
Q 003356 370 MSG-----TSMMQWDEYGYRLYAIEEGSSERVLIFS--F-GKCCLN--RGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (827)
Q Consensus 370 ~sg-----~~i~~W~~~~~~l~~~~~~~~~~v~~~~--~-~~~~~s--~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w 439 (827)
++| ..+.+|+..+++...... +...+..+. + ++.+++ |+.|+.+++|++..+...
T Consensus 276 ~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-------------- 340 (401)
T 4aez_A 276 ATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-------------- 340 (401)
T ss_dssp EEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE--------------
T ss_pred EEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce--------------
Confidence 442 289999999988887775 345664444 4 777777 668999999997653321
Q ss_pred EEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 440 ~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
....+.+|..+|.+++|+|||++|++|+.||.+ +|++.+++
T Consensus 341 ----~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 341 ----KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp ----EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred ----eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 122356789999999999999999999999999 99998875
No 69
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.93 E-value=7.6e-24 Score=237.55 Aligned_cols=273 Identities=15% Similarity=0.221 Sum_probs=205.8
Q ss_pred eEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCce
Q 003356 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (827)
Q Consensus 23 ~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~ 102 (827)
.+|++|++ ++||++.+++|+|||+. .+..+..+.-. .+.+.+++|+|+|||++||+++.||.|++|++..+..
T Consensus 109 ~~l~wS~~-n~lAvgld~tV~lWd~~-tg~~~~~~~~~----~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~- 181 (420)
T 4gga_A 109 NLVDWSSG-NVLAVALDNSVYLWSAS-SGDILQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR- 181 (420)
T ss_dssp BCEEECTT-SEEEEEETTEEEEEETT-TCCEEEEEECC----STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-
T ss_pred eeEEECCC-CEEEEEeCCEEEEEECC-CCCEEEEEEec----CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-
Confidence 45788875 58888889999999995 65544433211 1235689999999999999999999999999864321
Q ss_pred eecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCccccee
Q 003356 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (827)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~ 182 (827)
+. .+.++...+.+++.++..+++++.|+.+..+++........
T Consensus 182 ------------~~----------~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~--------------- 224 (420)
T 4gga_A 182 ------------LR----------NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA--------------- 224 (420)
T ss_dssp ------------EE----------EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE---------------
T ss_pred ------------EE----------EEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeE---------------
Confidence 11 12345667888889999999999999998865442221100
Q ss_pred cccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce-------ecC
Q 003356 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-------ELG 255 (827)
Q Consensus 183 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~-------~~~ 255 (827)
.+..+...+.. +.+.++|+.++++..|+.+++|+....+. ...
T Consensus 225 --------------------~~~~h~~~~~~----------~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~ 274 (420)
T 4gga_A 225 --------------------TLSGHSQEVCG----------LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274 (420)
T ss_dssp --------------------EEECCSSCEEE----------EEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC
T ss_pred --------------------Eecccccceee----------eeecCCCCeeeeeeccccceEEeeccccccceeeeeecc
Confidence 01122333444 44678888888888888888888765432 256
Q ss_pred CCCcEE-EEEcCCC-CEEEE--EecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE--cCC
Q 003356 256 SGDAVC-ASIAPEQ-QILAV--GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--KSR 329 (827)
Q Consensus 256 h~~~v~-va~sp~~-~lla~--g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~--~Dg 329 (827)
|...+. ++|+|.+ .++++ |+.|++|++||+.+ +.....+.. ...|.++.|+|++..+++++ .|+
T Consensus 275 ~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~~~~~~---------~~~v~~~~~~~~~~~lv~~sg~~d~ 344 (420)
T 4gga_A 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDA---------HSQVCSILWSPHYKELISGHGFAQN 344 (420)
T ss_dssp CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEEEEEEC---------SSCEEEEEEETTTTEEEEEECTTTC
T ss_pred cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccceeecc---------ccceeeeeecCCCCeEEEEEecCCC
Confidence 788887 9999965 56665 45799999999998 777776654 56799999999999888765 789
Q ss_pred cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCce
Q 003356 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR 384 (827)
Q Consensus 330 ~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~ 384 (827)
.|+|||+.+++++.++.+| .+.|.+++|+|++ ..+++|+ ++++|+.....
T Consensus 345 ~I~iwd~~~~~~v~~l~gH-~~~V~~l~~spdg----~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 345 QLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDG----ATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp CEEEEETTTCCEEEEECCC-SSCEEEEEECTTS----SCEEEEETTTEEEEECCSCSS
T ss_pred EEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEecCCeEEEEECCCCC
Confidence 9999999999999999998 7889999999999 8888887 89999986543
No 70
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=1.3e-24 Score=237.22 Aligned_cols=284 Identities=10% Similarity=0.122 Sum_probs=206.8
Q ss_pred ccccceEEEeecC------CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceecc
Q 003356 129 AEKGLSVSNIVSD------NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSD 202 (827)
Q Consensus 129 ~~~~~~v~~~~~d------~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~ 202 (827)
.++...|.+++.. ...+++++.++.+++|++........ + .. .
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~-~----------~~--------------------~ 63 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL-L----------QS--------------------Y 63 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE-E----------EE--------------------E
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe-e----------ee--------------------c
Confidence 3566777777554 24577788888888866652221100 0 00 0
Q ss_pred ccCCCcccEEEEEEcCCcceEEEEEeC----CcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcC-CCCEEEE
Q 003356 203 HKFPISSAIIWLELCLPMRLLFVLYSN----GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP-EQQILAV 273 (827)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~d----G~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp-~~~lla~ 273 (827)
....+...|.++. ++++ |++++++..++.+++|+....+.. .+|...+. ++|+| ++++|++
T Consensus 64 ~~~~~~~~v~~~~----------~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s 133 (366)
T 3k26_A 64 VDADADENFYTCA----------WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLS 133 (366)
T ss_dssp ECSCTTCCEEEEE----------EEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEE
T ss_pred cccCCCCcEEEEE----------eccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEE
Confidence 0111334566665 5666 778999999999999997765543 67888887 99999 9999999
Q ss_pred EecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc------
Q 003356 274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ------ 347 (827)
Q Consensus 274 g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~------ 347 (827)
|+.||+|++||+.+ ++.+..+.. ..+|.+.|.+++|+|||.+|++|+.||.|++||+.+++....+..
T Consensus 134 ~~~dg~i~iwd~~~-~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 207 (366)
T 3k26_A 134 VSKDHALRLWNIQT-DTLVAIFGG-----VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 207 (366)
T ss_dssp EETTSCEEEEETTT-TEEEEEECS-----TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCG
T ss_pred EeCCCeEEEEEeec-CeEEEEecc-----cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecC
Confidence 99999999999988 666666621 012999999999999999999999999999999987665433332
Q ss_pred ----------------------ccccceeeeeecCCCCCCccceeecc---eeEEEccCCc--------------eEEEE
Q 003356 348 ----------------------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--------------RLYAI 388 (827)
Q Consensus 348 ----------------------~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~--------------~l~~~ 388 (827)
| ...|.+++|+ + ..+++++ .+.+|+..+. ..+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 280 (366)
T 3k26_A 208 NKTNRPFISQKIHFPDFSTRDIH-RNYVDCVRWL--G----DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGR 280 (366)
T ss_dssp GGCSSCCCCEEECCCSEEECSSC-SSCCCEEEEE--T----TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEE
T ss_pred CCCcccccceeeccCccccccCC-cceEEEEEEc--C----CEEEEEecCCEEEEEeCCCccccccccccCCcchheecc
Confidence 4 5678888887 4 5666665 8999998765 33666
Q ss_pred ecCCcceEEEEec-----ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccC--CCcEEEEEEc
Q 003356 389 EEGSSERVLIFSF-----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ--NWPVQHVAAS 461 (827)
Q Consensus 389 ~~~~~~~v~~~~~-----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~--~~~I~~va~S 461 (827)
...|...+..+.+ ++.+++++.|+.+++|++..+.... .....+.+| ..+|.+++|+
T Consensus 281 ~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~s 344 (366)
T 3k26_A 281 FDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK----------------AKCTTLTHHKCGAAIRQTSFS 344 (366)
T ss_dssp EECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG----------------CEEEEECCTTCCSCEEEEEEC
T ss_pred ccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc----------------ccceEEcccccCCceEEEEeC
Confidence 6677766643333 5789999999999999976554310 012245555 7899999999
Q ss_pred CCCCEEEEEeCCceE-EEEcCC
Q 003356 462 KDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 462 pdG~~lavag~dg~i-iwd~~t 482 (827)
|+|++|++|+.||.+ +||+.+
T Consensus 345 ~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 345 RDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCeEEEEeCCCEEEEEEecC
Confidence 999999999999999 999853
No 71
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-23 Score=224.84 Aligned_cols=272 Identities=14% Similarity=0.129 Sum_probs=205.3
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
...++| |++++|+++ .++.|+||+.. .......... +.+.+.+++|+||+++|++++.||.+++|++....
T Consensus 21 v~~~~~-~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 92 (313)
T 3odt_A 21 VRDVVA-VDDSKVASVSRDGTVRLWSKD-DQWLGTVVYT------GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS 92 (313)
T ss_dssp EEEEEE-EETTEEEEEETTSEEEEEEES-SSEEEEEEEE------CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT
T ss_pred cEEEEe-cCCCEEEEEEcCCcEEEEECC-CCEEEEEeec------CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC
Confidence 344788 999888888 57889999995 5544443321 24778899999999999999999999999985432
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccc
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~ 180 (827)
... ....+..+...+.++..+++.+++++.||.+++|+ .. ...
T Consensus 93 ~~~--------------------~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~--~~~------------- 135 (313)
T 3odt_A 93 GED--------------------PLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG--SLV------------- 135 (313)
T ss_dssp TSC--------------------C-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT--EEE-------------
T ss_pred CCC--------------------cccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC--cEE-------------
Confidence 110 00112345567788888899999999999999865 11 111
Q ss_pred eecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEe-CCcEEEEeeccCccccceeecccee-cC-CC
Q 003356 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE-LG-SG 257 (827)
Q Consensus 181 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~~~~~~~~~~~~~~~~-~~-h~ 257 (827)
.....+...+.++. +.+ +++.++++..++.+++|+....... .. |.
T Consensus 136 ---------------------~~~~~~~~~v~~~~----------~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 184 (313)
T 3odt_A 136 ---------------------YNLQAHNASVWDAK----------VVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHN 184 (313)
T ss_dssp ---------------------EEEECCSSCEEEEE----------EEETTTTEEEEEETTSCEEEEETTEEEEEECSSCS
T ss_pred ---------------------EecccCCCceeEEE----------EccCCCCEEEEEECCCCEEEEecCceEEEEeccCc
Confidence 01122334455544 445 8888888889999999984433222 33 77
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 258 ~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
..+. ++|+|++. +++|+.||.|++||+.+ ++.+..+.. |.++|.+++|+||| .|++|+.||.|++||+
T Consensus 185 ~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~--------~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 185 DVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEG--------HESFVYCIKLLPNG-DIVSCGEDRTVRIWSK 253 (313)
T ss_dssp SCEEEEEEEETTE-EEEEETTSEEEEEETTT-CCEEEEEEC--------CSSCEEEEEECTTS-CEEEEETTSEEEEECT
T ss_pred ccEEEEEEcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhc--------CCceEEEEEEecCC-CEEEEecCCEEEEEEC
Confidence 7777 99999998 99999999999999988 788888887 99999999999999 5899999999999999
Q ss_pred cCCeeEEEeccccccceeeeeecCCCCCCccceeecc--eeEEEccCCceE
Q 003356 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRL 385 (827)
Q Consensus 337 ~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l 385 (827)
.++++..++..| ...+.+++|+|++ ..++.+. .+.+|+..++++
T Consensus 254 ~~~~~~~~~~~~-~~~i~~~~~~~~~----~~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 254 ENGSLKQVITLP-AISIWSVDCMSNG----DIIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp TTCCEEEEEECS-SSCEEEEEECTTS----CEEEEETTSCEEEEESCGGGC
T ss_pred CCCceeEEEecc-CceEEEEEEccCC----CEEEEeCCCcEEEEeCCCCce
Confidence 999999998877 5689999999998 5443322 788888876654
No 72
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.93 E-value=5.1e-24 Score=236.12 Aligned_cols=291 Identities=13% Similarity=0.044 Sum_probs=217.3
Q ss_pred cccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCC
Q 003356 128 FAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (827)
Q Consensus 128 ~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 207 (827)
+.++...|.+++.+++.+++++.||.|++|+.+........ ..+ ..+..+
T Consensus 12 ~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~--------~~~----------------------~~~~~h 61 (397)
T 1sq9_A 12 GKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPK--------DKS----------------------YSHFVH 61 (397)
T ss_dssp SSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGG--------GGE----------------------EEEECC
T ss_pred hhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCC--------Ccc----------------------eEEecC
Confidence 56778889999888899999999999999766543211000 000 111234
Q ss_pred cccEEEEEEcCCcceEEEEEeC----C---cEEEEeeccCccccceeeccce-----e---cCC-----CCcEE-EEEc-
Q 003356 208 SSAIIWLELCLPMRLLFVLYSN----G---QLMSCSVSKKGLKLAEFIKIDK-----E---LGS-----GDAVC-ASIA- 265 (827)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~d----G---~~~~~~~~~~~~~~~~~~~~~~-----~---~~h-----~~~v~-va~s- 265 (827)
...|.++. ++++ | +.+++++.++++++|+....+. . .+| ...+. ++|+
T Consensus 62 ~~~v~~~~----------~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 131 (397)
T 1sq9_A 62 KSGLHHVD----------VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 131 (397)
T ss_dssp TTCEEEEE----------EEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred CCcEEEEE----------EecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence 45566665 6677 8 8999999999999999876653 2 566 36665 9999
Q ss_pred ---CCCCE-EEEEecCCeEEEEEcCCC-----CcceE-----EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 266 ---PEQQI-LAVGTRRGVVELYDLAES-----ASLIR-----TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 266 ---p~~~l-la~g~~dg~v~vw~~~~~-----~~~~~-----~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
|++++ |++|+.||.|++||+... ...+. .+.+. ......|.+.|.+++|+|+| .|++|+.||.|
T Consensus 132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i 209 (397)
T 1sq9_A 132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT-VESPMTPSQFATSVDISERG-LIATGFNNGTV 209 (397)
T ss_dssp CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE-ECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee-eccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence 99999 999999999999999761 12232 44320 00112388999999999999 99999999999
Q ss_pred EEEeccCCeeEEEecc---cc--ccceeeeeecCCCCCCccceeecc------eeEEEccCCceEEEEecC---------
Q 003356 332 TVWSVSGCRLMSTIRQ---IS--LSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEG--------- 391 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~~---~~--~~~v~s~~~sp~~~~~~~~l~sg~------~i~~W~~~~~~l~~~~~~--------- 391 (827)
++||+.+++.+.++.. |. ...+.+++|+|++ ..++++. .+.+|+..+++.+..+.+
T Consensus 210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~----~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 285 (397)
T 1sq9_A 210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG----SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 285 (397)
T ss_dssp EEEETTTTEEEEEEECCC---CCCCCEEEEEECSST----TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred EEEECCCCceeEEEeccccccccCCccceEEECCCC----CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccc
Confidence 9999999998888876 41 4679999999998 7777663 678999999999888887
Q ss_pred ----CcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeec------cC-------
Q 003356 392 ----SSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI------SQ------- 451 (827)
Q Consensus 392 ----~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~------~~------- 451 (827)
|...|..+.+ ++.+++++.|+.+++|++..+.. ...+. +|
T Consensus 286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------~~~~~~~~~~~~~~~~~~~g 345 (397)
T 1sq9_A 286 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER--------------------ITTLNMHCDDIEIEEDILAV 345 (397)
T ss_dssp CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--------------------EEEEECCGGGCSSGGGCCCB
T ss_pred cccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce--------------------eEEEecccCcccchhhhhcc
Confidence 8888866555 78999999999999999744322 12222 44
Q ss_pred --------CCcEEEEEEcCCC----------CEEEEEeCCceE-EEEcCCCe
Q 003356 452 --------NWPVQHVAASKDG----------MFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 452 --------~~~I~~va~SpdG----------~~lavag~dg~i-iwd~~t~~ 484 (827)
..+|.+++|+|+| ++|++|+.||.+ +|++.+|+
T Consensus 346 ~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 346 DEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8999999999999 799999999999 99998874
No 73
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.93 E-value=5.8e-24 Score=231.50 Aligned_cols=288 Identities=11% Similarity=0.099 Sum_probs=198.1
Q ss_pred ceEEEEEecceE-EEEEc----cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCC---ccEEEEEecCcEEEE
Q 003356 22 QQIIYFKVNNGL-LLIAS----PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD---TKLIAVVTSSLYLHI 93 (827)
Q Consensus 22 ~~vv~fspdg~l-la~~~----~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPD---g~~lav~t~dg~l~l 93 (827)
...++|+|+|.. +++++ ++.|+||+.. .+....... ..+.+.+.+++|+|+ |++|++++.||.|++
T Consensus 21 v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~-~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 94 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ-HGDLKLLRE-----IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI 94 (357)
T ss_dssp EEEEEECTTSSEEEEEEC--CCCEEEEEEEEC-SSSEEEEEE-----EEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred eEEEEEcCCCceEEEecCccCCCcEEEEEeCC-CCcccceee-----ecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence 455899999964 45553 7899999995 443322211 123477899999999 699999999999999
Q ss_pred EEEEecC-ceeecCCCCCCCceeeeEeeEeecccccccccceEEE--------eecCCCeEEEEecCCcEEEEecCCccC
Q 003356 94 FKVQITE-KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--------IVSDNKHMLLGLSDGSLYSISWKGEFY 164 (827)
Q Consensus 94 ~~v~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--------~~~d~~~llv~t~dg~i~~~~w~~~~~ 164 (827)
|++.... .... +.++...|.+ +++++..+++++.||.+++|+......
T Consensus 95 wd~~~~~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~ 151 (357)
T 3i2n_A 95 WNLEAPEMPVYS-----------------------VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD 151 (357)
T ss_dssp ECTTSCSSCSEE-----------------------ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS
T ss_pred EeCCCCCccEEE-----------------------EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC
Confidence 9986543 1111 1122333433 356788999999999999865543221
Q ss_pred cceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCcccc
Q 003356 165 GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL 244 (827)
Q Consensus 165 ~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~ 244 (827)
....+. .........+.++.+.+ .++++|+.++++..++.+++
T Consensus 152 ~~~~~~-------------------------------~~~~~~~~~v~~~~~~~------~~~~~~~~l~~~~~d~~i~i 194 (357)
T 3i2n_A 152 PVANME-------------------------------PVQGENKRDCWTVAFGN------AYNQEERVVCAGYDNGDIKL 194 (357)
T ss_dssp CSEEEC-------------------------------CCTTSCCCCEEEEEEEC------CCC-CCCEEEEEETTSEEEE
T ss_pred cceecc-------------------------------ccCCCCCCceEEEEEEe------ccCCCCCEEEEEccCCeEEE
Confidence 111000 00011123455555322 25689999999999999999
Q ss_pred ceeecccee--cCCCCcEE-EEEcC---CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC
Q 003356 245 AEFIKIDKE--LGSGDAVC-ASIAP---EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD 318 (827)
Q Consensus 245 ~~~~~~~~~--~~h~~~v~-va~sp---~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD 318 (827)
|+....+.. ..|...+. ++|+| +++++++|+.||.|++||+.+ ......+.... ..+|.+.|.+++|+|+
T Consensus 195 ~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~---~~~~~~~v~~~~~~~~ 270 (357)
T 3i2n_A 195 FDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVS---EKAHKSTVWQVRHLPQ 270 (357)
T ss_dssp EETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEE---EECCSSCEEEEEEETT
T ss_pred EECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeec---cCCCcCCEEEEEECCC
Confidence 998766543 45677776 99999 999999999999999999987 55444433100 0029999999999999
Q ss_pred CC-EEEEEEcCCcEEEEeccCC-------------------eeEEEeccccccceeeeeecCCCCCCcccee-ecc---e
Q 003356 319 NS-AFAVGWKSRGLTVWSVSGC-------------------RLMSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT---S 374 (827)
Q Consensus 319 g~-~Lasg~~Dg~v~vWs~~~~-------------------~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~-sg~---~ 374 (827)
|. +|++|+.||.|++|++..+ .++.++.+| ...|.+++|+|++ ..++ +++ .
T Consensus 271 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~----~~l~~s~~~d~~ 345 (357)
T 3i2n_A 271 NRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS-TQPISSLDWSPDK----RGLCVCSSFDQT 345 (357)
T ss_dssp EEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC-SSCEEEEEECSSS----TTEEEEEETTSE
T ss_pred CCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC-CCCeeEEEEcCCC----CeEEEEecCCCc
Confidence 99 8999999999999999753 356666666 6678899999887 6665 454 6
Q ss_pred eEEEccCCce
Q 003356 375 MMQWDEYGYR 384 (827)
Q Consensus 375 i~~W~~~~~~ 384 (827)
+++|+....+
T Consensus 346 i~iw~~~~~~ 355 (357)
T 3i2n_A 346 VRVLIVTKLN 355 (357)
T ss_dssp EEEEEECC--
T ss_pred EEEEECCCcc
Confidence 7777766543
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.93 E-value=3.8e-23 Score=234.68 Aligned_cols=321 Identities=12% Similarity=0.134 Sum_probs=226.7
Q ss_pred EEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCcee
Q 003356 25 IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (827)
Q Consensus 25 v~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~ 103 (827)
-++++++++|+++ .+++|+||+.. .+..+..+. .+.+.+.+++|+||+ .+++++.||+|++|++..+....
T Consensus 126 ~~~~~~~~~l~sgs~dg~i~vwd~~-~~~~~~~~~------~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~ 197 (464)
T 3v7d_B 126 TCLQFEDNYVITGADDKMIRVYDSI-NKKFLLQLS------GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH 197 (464)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETT-TTEEEEEEC------CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEECCCEEEEEcCCCcEEEEECC-CCcEEEEEe------CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE
Confidence 3567788898888 57899999994 666555543 245788999999999 99999999999999986432111
Q ss_pred ecCCCCCCCceeeeEeeEeecccccccccceEEEee----cCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCccc
Q 003356 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV----SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (827)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~----~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i 179 (827)
. +.++...|.++. +++..+++++.||.+++|+........... .... .
T Consensus 198 ~-----------------------~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--~~~~---~ 249 (464)
T 3v7d_B 198 V-----------------------FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG--EEHD---Y 249 (464)
T ss_dssp E-----------------------ECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC--------CC---S
T ss_pred E-----------------------ECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccc--ccCC---c
Confidence 1 223344455443 345789999999999997665332211100 0000 0
Q ss_pred ceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCC
Q 003356 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGS 256 (827)
Q Consensus 180 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h 256 (827)
....+.+. ....... ...........++++|+.+++++.++++++|+....+.. .+|
T Consensus 250 ~~~~~~~~-------------------~~~~~~~-~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 309 (464)
T 3v7d_B 250 PLVFHTPE-------------------ENPYFVG-VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309 (464)
T ss_dssp SEEESCGG-------------------GCTTEEE-EECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred ceEeeccC-------------------CCeEEEE-EccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 00000000 0000111 111122233446789999999999999999998766543 678
Q ss_pred CCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 003356 257 GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (827)
Q Consensus 257 ~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs 335 (827)
...+. ++|+|+++++++|+.||+|++||+.+ ++.+..+.+ |.+.|.+++|+ +.+|++|+.||.|++||
T Consensus 310 ~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~--------h~~~v~~~~~~--~~~l~s~s~dg~v~vwd 378 (464)
T 3v7d_B 310 TDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQG--------HTALVGLLRLS--DKFLVSAAADGSIRGWD 378 (464)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECC--------CSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeC--------CCCcEEEEEEc--CCEEEEEeCCCcEEEEE
Confidence 88887 99999999999999999999999988 788888887 99999999998 58999999999999999
Q ss_pred ccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--eeEEEccCCceEEEE-ecCCcceEEEEec-ce-eeeeccc
Q 003356 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAI-EEGSSERVLIFSF-GK-CCLNRGV 410 (827)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~-~~~~~~~v~~~~~-~~-~~~s~~~ 410 (827)
+.++........ ...+..++++|++ ..+++|. .+.+|+..+++++.. ..++...|..+.| ++ .+++++.
T Consensus 379 ~~~~~~~~~~~~--~~~~~~~~~~~~~----~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~ 452 (464)
T 3v7d_B 379 ANDYSRKFSYHH--TNLSAITTFYVSD----NILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEK 452 (464)
T ss_dssp TTTCCEEEEEEC--TTCCCEEEEEECS----SEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEE
T ss_pred CCCCceeeeecC--CCCccEEEEEeCC----CEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEe
Confidence 998776555432 4457778899988 7777776 899999999998875 5677888877777 44 4445555
Q ss_pred CCCeeeeE
Q 003356 411 SGMTYARQ 418 (827)
Q Consensus 411 d~~~~~w~ 418 (827)
++...+|.
T Consensus 453 ~g~~~i~~ 460 (464)
T 3v7d_B 453 DGQSFLEI 460 (464)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEE
Confidence 66555544
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.93 E-value=6.3e-24 Score=235.61 Aligned_cols=309 Identities=11% Similarity=0.037 Sum_probs=204.5
Q ss_pred hcCcccEEEEcC-CccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEee--c-C
Q 003356 66 REGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--S-D 141 (827)
Q Consensus 66 ~~G~~~~v~wSP-Dg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~--~-d 141 (827)
+.+.+.+++|+| |+++||+++.||.|++|++.......... ... ..........++...|.++. + +
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYT--------CKA--VCSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEE--------ECE--EEEECTTCTTCCSSCEEEEEECTTC
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEe--------ccc--cccccccccccCCCcEEEEEEccCC
Confidence 347889999999 99999999999999999997543211100 000 00011111234555666664 4 4
Q ss_pred CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcc
Q 003356 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (827)
Q Consensus 142 ~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (827)
+..+++++.||.+++|+.+....... ......+..+.+.+.
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~-- 152 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTLQTADV-------------------------------------FNFEETVYSHHMSPV-- 152 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTTEEEEE-------------------------------------EECSSCEEEEEECSS--
T ss_pred CcEEEEEeCCCeEEEeeCCCCcccee-------------------------------------ccCCCceeeeEeecC--
Confidence 46788999999999866543211100 011223455554432
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeeccce---ecCCCCcEE-EEEcCCCC-EEEEEecCCeEEEEEcCCCCcceEEEE
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVS 296 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~-va~sp~~~-lla~g~~dg~v~vw~~~~~~~~~~~l~ 296 (827)
.+++.+++++..++.+++|+....+. +.+|...+. ++|+|+++ ++++|+.||.|++||+.........+.
T Consensus 153 -----~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~ 227 (408)
T 4a11_B 153 -----STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227 (408)
T ss_dssp -----CSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECC
T ss_pred -----CCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccc
Confidence 24666888888888899998876543 367888777 99999998 699999999999999987444454442
Q ss_pred eec-------CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce
Q 003356 297 LYD-------WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (827)
Q Consensus 297 ~~~-------~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l 369 (827)
... .....+|.+.|.+++|+|||++|++++.||.|++||+.+++....+..+... ..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---------~~------- 291 (408)
T 4a11_B 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN---------NS------- 291 (408)
T ss_dssp TTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCC---------CC-------
T ss_pred ccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccc---------cc-------
Confidence 211 0111358999999999999999999999999999999887654333221000 00
Q ss_pred eecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeec
Q 003356 370 MSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (827)
Q Consensus 370 ~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~ 449 (827)
.. ..... ........++.++.++.+++|++..+.. ...+.
T Consensus 292 ~~-~~~~~-------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~--------------------~~~~~ 331 (408)
T 4a11_B 292 KK-GLKFT-------------------VSCGCSSEFVFVPYGSTIAVYTVYSGEQ--------------------ITMLK 331 (408)
T ss_dssp SS-CCCCE-------------------ECCSSSSCEEEEEETTEEEEEETTTCCE--------------------EEEEC
T ss_pred cc-cceeE-------------------EecCCCceEEEEecCCEEEEEECcCCcc--------------------eeeec
Confidence 00 00000 0011123344556677888888644332 45667
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 450 ~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
+|..+|.+++|+|||++|++|+.||.+ +||+.+++
T Consensus 332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 899999999999999999999999999 99998875
No 76
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.93 E-value=9.2e-23 Score=230.40 Aligned_cols=311 Identities=11% Similarity=0.115 Sum_probs=236.9
Q ss_pred ccccc-eEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCC
Q 003356 129 AEKGL-SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (827)
Q Consensus 129 ~~~~~-~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 207 (827)
.++.. .+.|+..+++.+++|+.||.|++|+.... ... ..+..+
T Consensus 115 ~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~--~~~----------------------------------~~~~~h 158 (445)
T 2ovr_B 115 KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCL----------------------------------RTLVGH 158 (445)
T ss_dssp ECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTC--CEE----------------------------------EECCCC
T ss_pred cccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCC--cEE----------------------------------EEEcCC
Confidence 34444 35788999999999999999999665422 111 012234
Q ss_pred cccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEE
Q 003356 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELY 283 (827)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw 283 (827)
...|.++.+ +++.+++++.|+++++|+..+++.. .+|...+. ++++ ++.+++|+.||+|++|
T Consensus 159 ~~~v~~~~~------------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~w 224 (445)
T 2ovr_B 159 TGGVWSSQM------------RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVW 224 (445)
T ss_dssp SSCEEEEEE------------ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEE
T ss_pred CCCEEEEEe------------cCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEE
Confidence 455666552 3668888889999999998766543 67888876 8874 6789999999999999
Q ss_pred EcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCC
Q 003356 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (827)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~ 363 (827)
|+.+ ++.+..+.+ |.++|.+++| ||..+++|+.||.|++||+.++.++.++.+| ...+.++.+ ++
T Consensus 225 d~~~-~~~~~~~~~--------~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--~~- 289 (445)
T 2ovr_B 225 DIET-GQCLHVLMG--------HVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGH-TNRVYSLQF--DG- 289 (445)
T ss_dssp ESSS-CCEEEEEEC--------CSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCC-SSCEEEEEE--CS-
T ss_pred ECCC-CcEEEEEcC--------CcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCC-CCceEEEEE--CC-
Confidence 9998 788888887 9999999999 8899999999999999999999999999887 678999888 44
Q ss_pred CCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceE
Q 003356 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (827)
Q Consensus 364 ~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w 439 (827)
..+++|+ .+.+|+..+++......+|...+..+.+ ++.+++++.|+.+++|++..+..
T Consensus 290 ---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------------- 351 (445)
T 2ovr_B 290 ---IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC--------------- 351 (445)
T ss_dssp ---SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE---------------
T ss_pred ---CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE---------------
Confidence 6677665 8999999999999999999988988888 88999999999999999744332
Q ss_pred EEeeeceeec---cCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEe-e-CCccceEEEEEEEEEEeCCEEEEE-
Q 003356 440 LHLNLPVSYI---SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV-F-GDITQEQKIQSKGLLWLGKIIVVC- 512 (827)
Q Consensus 440 ~~~~~p~~~~---~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~-f-~~~~~e~~~~v~gl~W~~~~li~~- 512 (827)
...+. .|..+|.+++|+ ++++++|+.||.+ +||+.+++... + ..........|.++.|.++..+++
T Consensus 352 -----~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~ 424 (445)
T 2ovr_B 352 -----LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 424 (445)
T ss_dssp -----EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred -----EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEE
Confidence 23333 388899999995 6899999999999 99999987432 2 111112233577899987744433
Q ss_pred EEeeCCCcEEEEEeeCC
Q 003356 513 NYIDSSNTYELLFYPRY 529 (827)
Q Consensus 513 ~~~~~~~~~~lrly~~~ 529 (827)
+..+......+.+|+..
T Consensus 425 ~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 425 GSRNGTEETKLLVLDFD 441 (445)
T ss_dssp ECSSSSSCCEEEEEECC
T ss_pred cccCCCCccEEEEEECC
Confidence 22222224567777764
No 77
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.92 E-value=3.4e-23 Score=221.70 Aligned_cols=271 Identities=15% Similarity=0.203 Sum_probs=200.1
Q ss_pred eEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCce
Q 003356 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (827)
Q Consensus 23 ~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~ 102 (827)
.+|++|+++ +||++.|++|+|||.. .+..+..+.-. .+.+.+.+++|+|||++||+++.||+|++|++..+..
T Consensus 29 ~~l~WS~~~-~lAvg~D~tV~iWd~~-tg~~~~~~~~~----~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~- 101 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR- 101 (318)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECC----STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-
T ss_pred eEEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEec----CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee-
Confidence 568999987 8888899999999995 66555444311 1235678999999999999999999999999864321
Q ss_pred eecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCccccee
Q 003356 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (827)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~ 182 (827)
+. .+.++...+.+++.++..+++++.++.+..+..........
T Consensus 102 ------------~~----------~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~--------------- 144 (318)
T 4ggc_A 102 ------------LR----------NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA--------------- 144 (318)
T ss_dssp ------------EE----------EEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE---------------
T ss_pred ------------EE----------EecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEE---------------
Confidence 11 12344556777888889999999999887754332211100
Q ss_pred cccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee-------cC
Q 003356 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LG 255 (827)
Q Consensus 183 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-------~~ 255 (827)
....+...+.. +.+.++|+.++++..|+++++|+...++.. ..
T Consensus 145 --------------------~~~~~~~~~~~----------~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 194 (318)
T 4ggc_A 145 --------------------TLSGHSQEVCG----------LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194 (318)
T ss_dssp --------------------EEECCSSCEEE----------EEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC
T ss_pred --------------------EEcCccCceEE----------EEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecc
Confidence 01122223333 447788999999999999999998765321 45
Q ss_pred CCCcEE-EEEcCCCC---EEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE--cCC
Q 003356 256 SGDAVC-ASIAPEQQ---ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--KSR 329 (827)
Q Consensus 256 h~~~v~-va~sp~~~---lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~--~Dg 329 (827)
+...+. ++++|++. .+++|+.+++|++|+... ...... .. +...+..+.|+|++..+++++ .|+
T Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~-~~~~~~-~~--------~~~~v~~~~~~~~~~~~~~~sg~~d~ 264 (318)
T 4ggc_A 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSA-VD--------AHSQVCSILWSPHYKELISGHGFAQN 264 (318)
T ss_dssp CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT-CCEEEE-EE--------CSSCEEEEEEETTTTEEEEEECTTTC
T ss_pred cCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc-cccccc-cc--------ceeeeeeeeecccccceEEEEEcCCC
Confidence 666776 88988765 335677899999999877 444433 33 678899999999999887765 799
Q ss_pred cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCC
Q 003356 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (827)
Q Consensus 330 ~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~ 382 (827)
.|++||+.+++++.++.+| .+.|++++|+|++ ..+++|+ ++++|+...
T Consensus 265 ~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg----~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 265 QLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDG----ATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CEEEEETTTCCEEEEECCC-SSCEEEEEECTTS----SCEEEEETTTEEEEECCSC
T ss_pred EEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEecCCeEEEEECCC
Confidence 9999999999999999998 7889999999998 7777776 777887643
No 78
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.92 E-value=1.2e-23 Score=230.60 Aligned_cols=233 Identities=14% Similarity=0.117 Sum_probs=189.5
Q ss_pred EEEEeCCcEEEEeeccCccccceeeccc--e---ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEe
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID--K---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~--~---~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
+.+++||+.++++..++.+++|+....+ . +.+|...+. ++|+|++++|++|+.||+|++||+.+ ++.......
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~ 92 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG-RTWKPTLVI 92 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET-TEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC-CeeeeeEEe
Confidence 4477888988888888899999987653 2 267888887 99999999999999999999999977 554444332
Q ss_pred ecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee---EEEeccccccceeeeeecCCCCCCccceeecc-
Q 003356 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l---~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~- 373 (827)
..|.+.|.+++|+|||++|++|+.|+.|++|++..+.. ...+...+...+.+++|+|++ ..++++.
T Consensus 93 ------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~ 162 (372)
T 1k8k_C 93 ------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS----VLLAAGSC 162 (372)
T ss_dssp ------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS----SEEEEEET
T ss_pred ------ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC----CEEEEEcC
Confidence 12889999999999999999999999999999987652 334433336789999999998 7787776
Q ss_pred --eeEEEcc------------------CCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEe
Q 003356 374 --SMMQWDE------------------YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (827)
Q Consensus 374 --~i~~W~~------------------~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~ 430 (827)
.+.+|+. ..+++...+.+|...+..+.+ ++.+++++.|+.+++|++..+..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------ 236 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA------ 236 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE------
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce------
Confidence 8899994 357788888888888865555 77899999999999999765443
Q ss_pred cCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC--CeEEee
Q 003356 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ--KKWRVF 488 (827)
Q Consensus 431 ~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t--~~w~~f 488 (827)
...+..|..+|.+++|+|+|+++++| .||.+ +|++.+ +.|...
T Consensus 237 --------------~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~ 282 (372)
T 1k8k_C 237 --------------VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFG 282 (372)
T ss_dssp --------------EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEEC
T ss_pred --------------eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEe
Confidence 34566788899999999999999888 78888 999999 888654
No 79
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.92 E-value=2e-23 Score=249.96 Aligned_cols=273 Identities=14% Similarity=0.170 Sum_probs=207.5
Q ss_pred cCCCCcEE-EEEcCCC-CEEEEEecCCeEEEEEcCCCC----cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc
Q 003356 254 LGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~-~lla~g~~dg~v~vw~~~~~~----~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~ 327 (827)
.+|.+.|. ++++|++ ++|++|+.||+|++|++.... ...+.+.+ |.+.|.+++|+|||++|++|+.
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~--------h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG--------HSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC--------CSSCEEEEEECTTSSEEEEEET
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC--------CCCcEEEEEECCCCCEEEEEeC
Confidence 68999988 9999874 799999999999999997622 22346666 9999999999999999999999
Q ss_pred CCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEe---cCCcceEEEEec
Q 003356 328 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE---EGSSERVLIFSF 401 (827)
Q Consensus 328 Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~---~~~~~~v~~~~~ 401 (827)
|++|++||+.++.+..++.+| ...|.+++|+|++ ..+++|+ ++++|+..+....... .+|...|.++.+
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h-~~~v~~~~~s~~~----~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 525 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGH-TKDVLSVAFSLDN----RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF 525 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTS----SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEE
T ss_pred CCcEEEEECCCCcceeEEeCC-CCCEEEEEEeCCC----CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEE
Confidence 999999999999999999888 6789999999998 8888887 8999998766555443 357777865555
Q ss_pred ---c--eeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE
Q 003356 402 ---G--KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (827)
Q Consensus 402 ---~--~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i 476 (827)
+ ..+++++.|+++++|++..... ...+.+|..+|++++|+|||++|++|+.||.+
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~--------------------~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i 585 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKL--------------------RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCE--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcE--------------------EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 2 4689999999999999643322 45677899999999999999999999999999
Q ss_pred -EEEcCCCeEEeeCCccceEEEEEEEEEEeCC-EEEEEEEeeCCCcEEEEEeeCCCCCccceEEEEec------------
Q 003356 477 -LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSL------------ 542 (827)
Q Consensus 477 -iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~-~li~~~~~~~~~~~~lrly~~~~l~~~~~~~~~~l------------ 542 (827)
+||+.+++-. +.-. ....+..++|..+ .+++++ . ...+++|.... ...+.....
T Consensus 586 ~iwd~~~~~~~-~~~~---~~~~v~~~~~sp~~~~l~~~-~----~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~ 653 (694)
T 3dm0_A 586 LLWDLAEGKKL-YSLE---ANSVIHALCFSPNRYWLCAA-T----EHGIKIWDLES---KSIVEDLKVDLKAEAEKADNS 653 (694)
T ss_dssp EEEETTTTEEE-ECCB---CSSCEEEEEECSSSSEEEEE-E----TTEEEEEETTT---TEEEEEECCCCC---------
T ss_pred EEEECCCCceE-EEec---CCCcEEEEEEcCCCcEEEEE-c----CCCEEEEECCC---CCChhhhcccccccccccccc
Confidence 9999998743 2111 1123667888755 333332 2 13488887741 111111100
Q ss_pred ----------CCccEEEEccCCEEEEEEcCceEEEEEEE
Q 003356 543 ----------LAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (827)
Q Consensus 543 ----------~~~~~~l~~~~~~llV~~~~~~i~l~~~~ 571 (827)
.-..+.++..+..++.++.|+.|++|++.
T Consensus 654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 00123456678888889999999999864
No 80
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.92 E-value=2.3e-24 Score=237.43 Aligned_cols=235 Identities=15% Similarity=0.126 Sum_probs=182.5
Q ss_pred EEEEeCCcEEEEeeccCccccceeecc--ce---ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCc---ceEE
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKI--DK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS---LIRT 294 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~--~~---~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~---~~~~ 294 (827)
+.++|||+++++++.++++++|+.... +. +.+|...+. ++|+|++++||+|+.||+|++||+.+ ++ ....
T Consensus 17 ~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~~~ 95 (377)
T 3dwl_C 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP-DGTWKQTLV 95 (377)
T ss_dssp CEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------CCCCEEE
T ss_pred EEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-CCceeeeeE
Confidence 558899999999989999999998865 22 267888887 99999999999999999999999987 44 3444
Q ss_pred EEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe---eEEEeccccccceeeeeecCCCCCCccceee
Q 003356 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (827)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~---l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~s 371 (827)
+.. |.+.|.+++|+|||+.|++|+.|+.|++|++.++. +...+.+.+...|.+++|+|++ ..+++
T Consensus 96 ~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~~ 163 (377)
T 3dwl_C 96 LLR--------LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN----VLLAA 163 (377)
T ss_dssp CCC--------CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS----SEEEE
T ss_pred ecc--------cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC----CEEEE
Confidence 444 99999999999999999999999999999998876 4677777237889999999998 78887
Q ss_pred cc---eeEEEccC------------------CceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEE
Q 003356 372 GT---SMMQWDEY------------------GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLL 427 (827)
Q Consensus 372 g~---~i~~W~~~------------------~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~ 427 (827)
++ .+.+|+.. .+++...+ +|...|..+.+ ++.+++++.|+++++|++..+....
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~- 241 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP- 241 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE-
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc-
Confidence 76 79999984 34555555 78888855554 7889999999999999987665410
Q ss_pred EEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEcCCCeEEee
Q 003356 428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVF 488 (827)
Q Consensus 428 ~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~~t~~w~~f 488 (827)
.....+.+|..+|.+++|+|||++|++|+.++.++|+...+.|+..
T Consensus 242 ---------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~ 287 (377)
T 3dwl_C 242 ---------------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHT 287 (377)
T ss_dssp ---------------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCS
T ss_pred ---------------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEE
Confidence 0134567899999999999999999999999988888876666543
No 81
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.92 E-value=8e-24 Score=225.66 Aligned_cols=240 Identities=12% Similarity=0.134 Sum_probs=184.1
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCC-CcceEEEEeecCCCCCCCCCCeEEEEECCC--CCEEEEEEcCC
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR 329 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spD--g~~Lasg~~Dg 329 (827)
.+|.+.|. ++|+|+|++||+|+.||+|+||++... .+.+.++.+ |.++|.+++|+|+ |++||+|+.|+
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g--------H~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC--------CSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc--------ccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 57888887 999999999999999999999999752 356778877 9999999999874 89999999999
Q ss_pred cEEEEeccCCe--eEEEeccccccceeeeeecCC--CCCCccceeecc---eeEEEccCCceE--EEEecCCcceEEEEe
Q 003356 330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGYRL--YAIEEGSSERVLIFS 400 (827)
Q Consensus 330 ~v~vWs~~~~~--l~~tl~~~~~~~v~s~~~sp~--~~~~~~~l~sg~---~i~~W~~~~~~l--~~~~~~~~~~v~~~~ 400 (827)
+|++||+.+++ ...++.+| ...|.+++|+|+ + ..+++++ ++++|+...... .....+|...|..+.
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g----~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred EEEEEEcCCCceEEEEEeecC-CCceeEEEeCcCCCC----cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence 99999998764 45566666 678999999997 5 6777776 899999876531 345567888886555
Q ss_pred c----------------ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCC
Q 003356 401 F----------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (827)
Q Consensus 401 ~----------------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG 464 (827)
+ ++.+++++.|+++++|++..+.... .+...+.+|..+|++++|+|++
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~----------------~~~~~l~~H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRDVAWSPTV 216 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEEEEECCCC
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE----------------EEEEEecCCCCceEEEEECCCC
Confidence 4 2479999999999999987655311 1134567899999999999995
Q ss_pred ---CEEEEEeCCceE-EEEcCCC--eEE--eeCCccceEEEEEEEEEEeC--CEEEEEEEeeCCCcEEEEEeeCC
Q 003356 465 ---MFLAVAGLHGLI-LYDIRQK--KWR--VFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 465 ---~~lavag~dg~i-iwd~~t~--~w~--~f~~~~~e~~~~v~gl~W~~--~~li~~~~~~~~~~~~lrly~~~ 529 (827)
++||+|+.||.+ +||+.++ .|+ .+.... ..-.|..+.|.. +.+++++. +..+++|...
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~las~~~-----D~~v~lw~~~ 284 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEK--FPDVLWRASWSLSGNVLALSGG-----DNKVTLWKEN 284 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC--CSSCEEEEEECSSSCCEEEEET-----TSCEEEEEEC
T ss_pred CCceEEEEEECCCcEEEEEeCCCCCccceeeeeccc--CCCcEEEEEECCCCCEEEEEcC-----CCcEEEEEEC
Confidence 899999999999 9999874 343 221111 122467888864 45655532 2468888764
No 82
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.92 E-value=3.4e-24 Score=235.81 Aligned_cols=278 Identities=7% Similarity=0.054 Sum_probs=183.1
Q ss_pred ceEEEEEecceEEEEEcc--------CeEEEeecCCceeE-----EEEEEeChHhhhh-cCcccEEEEcCCccEEEEEe-
Q 003356 22 QQIIYFKVNNGLLLIASP--------CHIELWSSSQHKVR-----LGKYKRDSESVQR-EGENLQAVWSPDTKLIAVVT- 86 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~~--------~~v~IW~~~~~~~~-----l~~~~r~~~s~~~-~G~~~~v~wSPDg~~lav~t- 86 (827)
...++|+|||++||+++. ++|+||++. +... +..... -.+.. ...+.+ ++|+++.++++.
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~-~~~~~~~~~~~~~~~--~~l~~~~~~v~s--~~~~~~~~~~g~~ 91 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVD-PTKDTEKEQFHILSE--FALEDNDDSPTA--IDASKGIILVGCN 91 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEEC-TTSSSHHHHEEEEEE--EECCTTSCCCCE--EEEETTEEEEECC
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEc-CCCcceeeeeeeeeE--EEccCCCCceEE--EEeCCCEEEEEEC
Confidence 455899999999999842 359999985 3211 111100 00111 122334 455666777654
Q ss_pred ----------cCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccc--cccceEEEeecCCCeEEEEe--cCC
Q 003356 87 ----------SSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFA--EKGLSVSNIVSDNKHMLLGL--SDG 152 (827)
Q Consensus 87 ----------~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~~~d~~~llv~t--~dg 152 (827)
.|+++++|++......... +... .. .... .....+.+|++|++.+++++ .|+
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~---------~~~~----~~-~~~~~~~~~~~~v~fSpDg~~la~as~~~d~ 157 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEF---------LTSV----DF-DASTNADDYTKLVYISREGTVAAIASSKVPA 157 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEE---------EEEE----CS-SCCCCTTCCEEEEEECTTSSCEEEEESCSSC
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEE---------eeee----ce-eecCCcccCEEEEEEcCCCCEEEEEECCCCC
Confidence 4678999998754432111 0000 00 0001 11234568899999988776 478
Q ss_pred cEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcE
Q 003356 153 SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL 232 (827)
Q Consensus 153 ~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~ 232 (827)
.|++|+.. ...... . ..+...|.++ .++|||++
T Consensus 158 ~i~iwd~~--~~~~~~----------------------------------~-~~~~~~V~~v----------~fspdg~~ 190 (365)
T 4h5i_A 158 IMRIIDPS--DLTEKF----------------------------------E-IETRGEVKDL----------HFSTDGKV 190 (365)
T ss_dssp EEEEEETT--TTEEEE----------------------------------E-EECSSCCCEE----------EECTTSSE
T ss_pred EEEEeECC--CCcEEE----------------------------------E-eCCCCceEEE----------EEccCCce
Confidence 88885543 221110 0 0122234444 47888998
Q ss_pred EEEeeccCccccceeecccee-----cCCCCcEE-EEEcCCCCEEEEEecCC----eEEEEEcCCCCcc----eEEEEee
Q 003356 233 MSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQQILAVGTRRG----VVELYDLAESASL----IRTVSLY 298 (827)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~-va~sp~~~lla~g~~dg----~v~vw~~~~~~~~----~~~l~~~ 298 (827)
+++++++ .+.+|+...++.. .+|...+. ++|+|+++++++++.|+ ++++|++.. ... .+.+.+
T Consensus 191 l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~-~~~~~~~~~~~~~- 267 (365)
T 4h5i_A 191 VAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS-GNTSVLRSKQVTN- 267 (365)
T ss_dssp EEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET-TEEEEEEEEEEES-
T ss_pred EEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc-ceecceeeeeecC-
Confidence 8887654 4555554444322 46777787 99999999999999987 688899876 322 234444
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEe-ccccccceeeeeecCCCCCCccceeecc---e
Q 003356 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI-RQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (827)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl-~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~ 374 (827)
|..+|++++|||||++||+|+.|++|+|||+.+++++.++ .+| ...|++++|+|++ ..+++|+ +
T Consensus 268 -------~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~fSpdg----~~laS~S~D~t 335 (365)
T 4h5i_A 268 -------RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVTISPDS----TYVASVSAANT 335 (365)
T ss_dssp -------SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEEECTTS----CEEEEEETTSE
T ss_pred -------CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEEECCCC----CEEEEEeCCCe
Confidence 8999999999999999999999999999999999998886 556 7889999999998 7777665 6
Q ss_pred eEEEcc
Q 003356 375 MMQWDE 380 (827)
Q Consensus 375 i~~W~~ 380 (827)
+++|++
T Consensus 336 vrvw~i 341 (365)
T 4h5i_A 336 IHIIKL 341 (365)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 667765
No 83
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7e-24 Score=238.72 Aligned_cols=324 Identities=9% Similarity=0.040 Sum_probs=209.9
Q ss_pred ceEEEEEe-cceEEEEE-ccCeEEEeecCCc---eeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEE
Q 003356 22 QQIIYFKV-NNGLLLIA-SPCHIELWSSSQH---KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (827)
Q Consensus 22 ~~vv~fsp-dg~lla~~-~~~~v~IW~~~~~---~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v 96 (827)
...++|+| ||++||++ .+++|+||+.. . ... .+......+.+.+.+++|+||+++|++++.||.|++|++
T Consensus 66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~-~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~ 140 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGSDQGVIKIWNLK-EIIVGEV----YSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKV 140 (437)
T ss_dssp EEEEEEECSSSCEEEEEETTSEEEEEEHH-HHHTTCC----CSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred eEEEEECCCCCCEEEEecCCceEEEeECc-ccccCcc----cceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEe
Confidence 45589999 99999998 57899999984 3 110 011111123578899999999999999999999999999
Q ss_pred Eec---CceeecCCCCCCCceeeeEeeEeeccccccc--ccceEEEee----cCCCeEEEEecCCcEEEEecCCccCcce
Q 003356 97 QIT---EKSIQIGGKQPSGLFFIKISLVLNEQLPFAE--KGLSVSNIV----SDNKHMLLGLSDGSLYSISWKGEFYGAF 167 (827)
Q Consensus 97 ~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~~----~d~~~llv~t~dg~i~~~~w~~~~~~~~ 167 (827)
... ........ ..+..+ .+.. ....+.++. +++..+++++.||.|++|+.... ...
T Consensus 141 ~~~~~~~~~~~~~~-----~~i~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~ 205 (437)
T 3gre_A 141 NHYQQESEVKFLNC-----ECIRKI--------NLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL--ERL 205 (437)
T ss_dssp EEEEETTEEEEEEE-----EEEEEE--------EGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC--CEE
T ss_pred ccccCCceeecccc-----ceeEEE--------EccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--eee
Confidence 632 21111100 011111 1111 333444543 66789999999999998655422 111
Q ss_pred eecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCcccccee
Q 003356 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF 247 (827)
Q Consensus 168 ~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~ 247 (827)
. . .....+...|.+++ ++++|+.+++++.|+++++|+.
T Consensus 206 ~------------~--------------------~~~~~h~~~v~~~~----------~s~~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 206 Q------------I--------------------IENSPRHGAVSSIC----------IDEECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp E------------E--------------------EECCGGGCCEEEEE----------ECTTSCEEEEEETTSCEEEEET
T ss_pred E------------E--------------------EccCCCCCceEEEE----------ECCCCCEEEEEcCCCeEEEEEc
Confidence 0 0 00011344566665 6788999999999999999998
Q ss_pred ecccee----cCCCCcEE-EEEc----CCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCC-----C----------
Q 003356 248 IKIDKE----LGSGDAVC-ASIA----PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY-----S---------- 303 (827)
Q Consensus 248 ~~~~~~----~~h~~~v~-va~s----p~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~-----~---------- 303 (827)
...+.. .+|...+. ++++ |++.+|++|+.||+|++||+.+ ++.+..+.+..... +
T Consensus 244 ~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (437)
T 3gre_A 244 RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELN 322 (437)
T ss_dssp TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCC
T ss_pred CCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccce
Confidence 765543 26666666 8555 5678999999999999999988 77777776542111 1
Q ss_pred ---CCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecccc--ccceeeeeecCCCCCCccceeecceeEEE
Q 003356 304 ---MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS--LSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (827)
Q Consensus 304 ---~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~--~~~v~s~~~sp~~~~~~~~l~sg~~i~~W 378 (827)
..|.+.|++++|+ ++.+|++|+.|+.|++||+.++++..++.+|. ...+....++++. ..+.. .|
T Consensus 323 ~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~ 392 (437)
T 3gre_A 323 FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANL----TMLLR-----KM 392 (437)
T ss_dssp CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTE----EEEEE-----EC
T ss_pred ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecce----EEEEE-----ec
Confidence 1278889999999 88999999999999999999998888887752 2233333343332 21111 12
Q ss_pred ccCCceEEEEecCCcceEEEEec-----ceeeeecccCCCeeeeE
Q 003356 379 DEYGYRLYAIEEGSSERVLIFSF-----GKCCLNRGVSGMTYARQ 418 (827)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~-----~~~~~s~~~d~~~~~w~ 418 (827)
+............|...|.++.+ ...+++++.||.+++|.
T Consensus 393 ~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 393 KRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp C-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 22223333444567888866655 34789999999999984
No 84
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.92 E-value=1.3e-23 Score=226.88 Aligned_cols=264 Identities=14% Similarity=0.067 Sum_probs=192.4
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccc-------eecCCCCcEE-EEEcC--CCCEEEEE
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-------KELGSGDAVC-ASIAP--EQQILAVG 274 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~-------~~~~h~~~v~-va~sp--~~~lla~g 274 (827)
..+...|.++. +++||+.+++++.|+++++|+..... .+.+|...+. ++|+| ++++|++|
T Consensus 8 ~gH~~~v~~~~----------~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 8 SGHDDLVHDVV----------YDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp CCCSSCEEEEE----------ECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEE
T ss_pred cccccceeEEE----------EcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEE
Confidence 45667788877 67788888888888889999876432 1257888887 99999 69999999
Q ss_pred ecCCeEEEEEcCCCC--------cceEEEEeecCCCCCCCCCCeEEEEECCC--CCEEEEEEcCCcEEEEeccCCeeEEE
Q 003356 275 TRRGVVELYDLAESA--------SLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCRLMST 344 (827)
Q Consensus 275 ~~dg~v~vw~~~~~~--------~~~~~l~~~~~~~~~~h~~~V~~l~~spD--g~~Lasg~~Dg~v~vWs~~~~~l~~t 344 (827)
+.||+|++||+.... +.+..+.. |.++|.+++|+|+ +.+|++|+.||.|++||+.+++....
T Consensus 78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLND--------SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp ETTSCEEEEEECTTSCTTSSCSEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred cCCCeEEEEecCCCcccccccCcceeeeecc--------cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence 999999999998722 33445555 9999999999999 99999999999999999987664433
Q ss_pred ec------------cccccceeeeeecCCCCCCccceeecc---eeEEEccCCceE--EEEecCCcceEEEEec---c--
Q 003356 345 IR------------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL--YAIEEGSSERVLIFSF---G-- 402 (827)
Q Consensus 345 l~------------~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l--~~~~~~~~~~v~~~~~---~-- 402 (827)
+. ..+...+.+++|+|+... ...++.+. .+..|....++. .....+|...|..+.+ +
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFS-PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSS-CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred ccccccccccccccCCcccceeEEEeccCCCC-CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 22 122457889999987211 15565554 566666666654 6667788888865555 4
Q ss_pred --eeeeecccCCCeeeeEEEEcCCeEEEEecCCCC------------------------cceE--EEeeeceeeccCCCc
Q 003356 403 --KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD------------------------ELKI--LHLNLPVSYISQNWP 454 (827)
Q Consensus 403 --~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~------------------------~~~w--~~~~~p~~~~~~~~~ 454 (827)
+.+++++.|+.+++|++..+............. ...| ...+....+.+|..+
T Consensus 229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (351)
T 3f3f_A 229 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE 308 (351)
T ss_dssp SSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSC
T ss_pred cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc
Confidence 689999999999999998754322111110000 0011 233445667789999
Q ss_pred EEEEEEcCCCCEEEEEeCCceE-EEEcCCC-eEEe
Q 003356 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWRV 487 (827)
Q Consensus 455 I~~va~SpdG~~lavag~dg~i-iwd~~t~-~w~~ 487 (827)
|.+++|+|+|++||+|+.||.+ +|++.++ .|+.
T Consensus 309 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 309 VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp EEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 9999999999999999999999 9999876 3443
No 85
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.92 E-value=6.6e-24 Score=239.28 Aligned_cols=283 Identities=13% Similarity=0.155 Sum_probs=193.7
Q ss_pred eEEEEEe-cceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcC-CccEEEEEecCcEEEEEEEEec
Q 003356 23 QIIYFKV-NNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQIT 99 (827)
Q Consensus 23 ~vv~fsp-dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSP-Dg~~lav~t~dg~l~l~~v~~~ 99 (827)
..++|+| ++++||++ .+++|+|||+. ......... ...+.+.+.+++|+| |+.+|++++.||+|++||+...
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~-~~~~~~~~~----~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFG-IKDKPTFIK----GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSS-CCSCCEEEC----CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECC-CCCceeEEE----ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 4589999 56789988 57899999985 332222111 112457899999998 7899999999999999998532
Q ss_pred CceeecCCCCCCCceeeeEeeEeecccccccccceE--EEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCc
Q 003356 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (827)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~ 177 (827)
........ ......+ .++.+++..+++|+.||.|++|+.++....
T Consensus 198 ~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~------------ 244 (435)
T 4e54_B 198 ILRVFASS---------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW------------ 244 (435)
T ss_dssp EEEEEECC---------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC------------
T ss_pred ceeEEecc---------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE------------
Confidence 21111110 0111112 355678889999999999998765432111
Q ss_pred ccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCc-EEEEeeccCccccceeecccee---
Q 003356 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE--- 253 (827)
Q Consensus 178 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~~~~~~~~~~~~~~~~--- 253 (827)
.+..+...|.++. ++|+++ ++++++.|+++++|+....+..
T Consensus 245 -------------------------~~~~h~~~v~~v~----------~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~ 289 (435)
T 4e54_B 245 -------------------------NLRMHKKKVTHVA----------LNPCCDWFLATASVDQTVKIWDLRQVRGKASF 289 (435)
T ss_dssp -------------------------CSBCCSSCEEEEE----------ECTTCSSEEEEEETTSBCCEEETTTCCSSSCC
T ss_pred -------------------------EEecccceEEeee----------ecCCCceEEEEecCcceeeEEecccccccceE
Confidence 1223455677766 556665 6777888999999997654321
Q ss_pred ---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE---
Q 003356 254 ---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--- 326 (827)
Q Consensus 254 ---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~--- 326 (827)
.+|...|. ++|+|++++|++|+.||+|++||+.+ +.....+....... .....+..+.|+|++..+++++
T Consensus 290 ~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d 366 (435)
T 4e54_B 290 LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPHRH--FQHLTPIKAAWHPRYNLIVVGRYPD 366 (435)
T ss_dssp SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCCCCC--CSSSCCCBCEECSSSSCEEEECCCC
T ss_pred EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC-CccceEEecccccc--cccceeEEEEEcCCCCEEEEEEcCC
Confidence 46888887 99999999999999999999999988 66655554421100 0011233456677666666654
Q ss_pred ---------cCCcEEEEeccCCeeEEEeccccccceeee-eecCCCCCCccceeecc--eeEEEccCCceE
Q 003356 327 ---------KSRGLTVWSVSGCRLMSTIRQISLSSISSP-IVKPNQDCKYEPLMSGT--SMMQWDEYGYRL 385 (827)
Q Consensus 327 ---------~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~-~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l 385 (827)
+++.|++||..+++++.++.+++...|.++ +|+|++ ..+++|. ++++|+.+.++.
T Consensus 367 ~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg----~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 367 PNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG----DTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp TTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS----SCEEEECSSEEEECCCC----
T ss_pred CCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC----CEEEEEcCCcEEEEECCcCee
Confidence 346799999999999999876557778887 699998 7888776 889999887653
No 86
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.7e-23 Score=223.32 Aligned_cols=284 Identities=10% Similarity=0.069 Sum_probs=204.1
Q ss_pred ceEEEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
...++|+|||++|++++ ++.|+||+.. .+..+..+. .+.+.+.+++|+||+++|++++.||.|++|++..+.
T Consensus 35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 107 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSKDSSASVWYSL-NGERLGTLD------GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107 (369)
T ss_dssp EEEEEECTTSCEEEEEESSSCEEEEETT-TCCEEEEEC------CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCC-Cchhhhhhh------hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 34488999999999884 7789999985 555555432 134678899999999999999999999999986433
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecC-----CcEEEEecCCccCcceeecccCCC
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD-----GSLYSISWKGEFYGAFELVHSSND 175 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~d-----g~i~~~~w~~~~~~~~~l~~~p~~ 175 (827)
.. ..+ . ......-.++.+++..+++++.+ |.+.+|+..........
T Consensus 108 ~~-------------~~~----~-----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~------- 158 (369)
T 3zwl_B 108 CV-------------ATW----K-----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL------- 158 (369)
T ss_dssp EE-------------EEE----E-----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE-------
T ss_pred EE-------------EEe----e-----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee-------
Confidence 11 111 0 01112223567788899999988 99988766533221110
Q ss_pred CcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeec-cce--
Q 003356 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK-IDK-- 252 (827)
Q Consensus 176 ~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~-~~~-- 252 (827)
.. ..... ............+..+. ++++|+.++++..++.+++|+... .+.
T Consensus 159 ----~~---~~~~~---------~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 212 (369)
T 3zwl_B 159 ----TK---VSEEP---------IHKIITHEGLDAATVAG----------WSTKGKYIIAGHKDGKISKYDVSNNYEYVD 212 (369)
T ss_dssp ----EE---ECSSC---------SEEEECCTTCCCEEEEE----------ECGGGCEEEEEETTSEEEEEETTTTTEEEE
T ss_pred ----cc---cccce---------eeeccCCcCccceeEEE----------EcCCCCEEEEEcCCCEEEEEECCCCcEeEE
Confidence 00 00000 00000011111454444 778888888888888888998776 222
Q ss_pred -ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC-
Q 003356 253 -ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR- 329 (827)
Q Consensus 253 -~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg- 329 (827)
+..|...+. ++|+|++++|++|+.||.|++||+.+ ++.+..+. +..++.+++|+|+|.++++++.++
T Consensus 213 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (369)
T 3zwl_B 213 SIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYE---------TDCPLNTAVITPLKEFIILGGGQEA 282 (369)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEE---------CSSCEEEEEECSSSSEEEEEECCC-
T ss_pred EEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-Cceeeeec---------CCCCceeEEecCCCceEEEeecCCC
Confidence 256777777 99999999999999999999999988 66666655 578899999999999999999988
Q ss_pred -------------cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCC
Q 003356 330 -------------GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (827)
Q Consensus 330 -------------~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~ 382 (827)
.+++|+..+++....+.+| ...|.+++|+|++ ..+++++ .+.+|+..+
T Consensus 283 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~~~----~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 283 KDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-FGPLNTVAISPQG----TSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ------------CEEEEEETTTCCEEEEEECC-SSCEEEEEECTTS----SEEEEEETTSEEEEEEECH
T ss_pred ceEEEEecCCCcceeEEEecCCCcchhheecc-cCcEEEEEECCCC----CEEEEEcCCCeEEEEECcc
Confidence 8999999999999999887 6789999999987 6666654 566666554
No 87
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.8e-23 Score=220.59 Aligned_cols=272 Identities=13% Similarity=0.176 Sum_probs=213.0
Q ss_pred cccccceEEEee-cCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCC
Q 003356 128 FAEKGLSVSNIV-SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP 206 (827)
Q Consensus 128 ~~~~~~~v~~~~-~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~ 206 (827)
+.++...|.+++ ++++.+++++.||.+++|+.+...... ....
T Consensus 14 l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~------------------------------------~~~~ 57 (313)
T 3odt_A 14 LKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGT------------------------------------VVYT 57 (313)
T ss_dssp ECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEE------------------------------------EEEE
T ss_pred hhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEE------------------------------------Eeec
Confidence 455666776664 567889999999999997654321110 0112
Q ss_pred CcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccc------eecCCCCcEE-EEEcCCCCEEEEEecCCe
Q 003356 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID------KELGSGDAVC-ASIAPEQQILAVGTRRGV 279 (827)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~------~~~~h~~~v~-va~sp~~~lla~g~~dg~ 279 (827)
+...+.++. ++++|+.++++..++.+++|+..... .+.+|...+. ++| +++++++|+.||+
T Consensus 58 ~~~~v~~~~----------~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~ 125 (313)
T 3odt_A 58 GQGFLNSVC----------YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKT 125 (313)
T ss_dssp CSSCEEEEE----------EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred CCccEEEEE----------ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCC
Confidence 234465555 77888888888888888888765432 2267888877 888 6789999999999
Q ss_pred EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeee
Q 003356 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (827)
Q Consensus 280 v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~ 358 (827)
|++|| . ......+.. |.++|.+++|+| ++..+++++.||.|++|| .+.....+...+...+.+++|
T Consensus 126 i~~~d--~-~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~ 192 (313)
T 3odt_A 126 AKVWK--E-GSLVYNLQA--------HNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAV 192 (313)
T ss_dssp EEEEE--T-TEEEEEEEC--------CSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEE
T ss_pred EEEEc--C-CcEEEeccc--------CCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEE
Confidence 99999 3 567777777 999999999998 999999999999999999 456677777744778999999
Q ss_pred cCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec--ceeeeecccCCCeeeeEEEEcCCeEEEEecCC
Q 003356 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (827)
Q Consensus 359 sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d 433 (827)
+|++ . ++++. .+.+|+..+++.+....+|...+..+.+ ...+++++.|+.+++|++..+..
T Consensus 193 ~~~~----~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--------- 258 (313)
T 3odt_A 193 VDDG----H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL--------- 258 (313)
T ss_dssp EETT----E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCE---------
T ss_pred cCCC----e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCce---------
Confidence 9998 6 66555 8999999999999999899988866655 33689999999999999655433
Q ss_pred CCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEE
Q 003356 434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (827)
Q Consensus 434 ~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~ 486 (827)
...+..|..+|.+++|+|+|+ +++++.||.+ +||+.++++.
T Consensus 259 -----------~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 259 -----------KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp -----------EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred -----------eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 445667888999999999999 5579999999 9999988764
No 88
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.92 E-value=2.9e-23 Score=229.29 Aligned_cols=280 Identities=13% Similarity=0.124 Sum_probs=195.6
Q ss_pred ceEEEEEecc-eEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcC-CccEEEEEecCcEEEEEEEEe
Q 003356 22 QQIIYFKVNN-GLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQI 98 (827)
Q Consensus 22 ~~vv~fspdg-~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSP-Dg~~lav~t~dg~l~l~~v~~ 98 (827)
...++|+|+| ++||++ .++.|+||+.. .......... ..+.+.+.+++|+| |+++|++++.||.|++|++..
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYD-VQNKTSFIQG----MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG 150 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTSCEEEEETT-STTCEEEECC----CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS
T ss_pred EEEEEECCCCCCEEEEEcCCCeEEEEeCC-Ccccceeeec----CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC
Confidence 4558999999 888888 57899999995 4433333211 12347889999999 789999999999999999863
Q ss_pred cCceeecCCCCCCCceeeeEeeEeecccccccccceE--EEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCC
Q 003356 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (827)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~ 176 (827)
... ..... .......| .++.+++..+++++.||.+++|+.++.. .
T Consensus 151 ~~~-~~~~~--------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~--------- 197 (383)
T 3ei3_B 151 SVI-QVFAK--------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHE---I--------- 197 (383)
T ss_dssp CEE-EEEEC--------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCE---E---------
T ss_pred Cce-EEEec--------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCE---E---------
Confidence 111 00100 01111223 3557788999999999999986653221 1
Q ss_pred cccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCc-EEEEeeccCccccceeec----cc
Q 003356 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIK----ID 251 (827)
Q Consensus 177 ~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~~~~~~~~~~~~----~~ 251 (827)
..+..+...|.++. ++++|+ ++++++.|+++++|+... ..
T Consensus 198 -------------------------~~~~~h~~~v~~~~----------~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 242 (383)
T 3ei3_B 198 -------------------------FKEKLHKAKVTHAE----------FNPRCDWLMATSSVDATVKLWDLRNIKDKNS 242 (383)
T ss_dssp -------------------------EEEECSSSCEEEEE----------ECSSCTTEEEEEETTSEEEEEEGGGCCSTTC
T ss_pred -------------------------EEeccCCCcEEEEE----------ECCCCCCEEEEEeCCCEEEEEeCCCCCcccc
Confidence 01123345566665 677888 888888899999999876 22
Q ss_pred ee--cCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCC----------CCeEEEEECC
Q 003356 252 KE--LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT----------GPVSCIAWTP 317 (827)
Q Consensus 252 ~~--~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~----------~~V~~l~~sp 317 (827)
.. .+|...+. ++|+| ++++|++|+.||+|++||+.+ ......+...... ...|. +.+..++|+|
T Consensus 243 ~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~s~ 320 (383)
T 3ei3_B 243 YIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD-WSKPDQIIIHPHR-QFQHLTPIKATWHPMYDLIVAGRYP 320 (383)
T ss_dssp EEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB-TTSCSEEEECCBC-CCTTSCCCCCEECSSSSEEEEECBC
T ss_pred eEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC-Ccccccccccccc-ccccccceEEeccCCCCceEEEecC
Confidence 22 46788877 99999 999999999999999999988 6666666542210 01122 4455566677
Q ss_pred CCCEEEEEEcCCcEEEEeccCCeeEEEecccc-ccceeeeeecCCCCCCccceeecc--eeEEEccCC
Q 003356 318 DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYG 382 (827)
Q Consensus 318 Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~-~~~v~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~ 382 (827)
||++ +|+.|+.|++||+.+++++.++.+++ ...+..++|+|++ ..+++|+ .+++|+..+
T Consensus 321 dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g----~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 321 DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG----DVLASGMGFNILIWNRED 382 (383)
T ss_dssp CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS----SEEEEEETTEEEEEECC-
T ss_pred Cccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc----cEEEEecCCcEEEEecCC
Confidence 7766 67789999999999999999998753 4456666899988 6666665 677777653
No 89
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=1.6e-23 Score=232.92 Aligned_cols=224 Identities=13% Similarity=0.127 Sum_probs=160.8
Q ss_pred EEEEeCCcEEEEeeccCccccceeeccce--------ecCCCCcEE-EEEcC--------CCCEEEEEecCCeEEEEEcC
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK--------ELGSGDAVC-ASIAP--------EQQILAVGTRRGVVELYDLA 286 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~--------~~~h~~~v~-va~sp--------~~~lla~g~~dg~v~vw~~~ 286 (827)
.++.++++++++++.|+++++|+....+. +.+|.+.|. ++|+| |+++||+|+.|++|+|||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 34667888999999999999999876532 268999998 99998 89999999999999999998
Q ss_pred CCCcceEEEEeecCCCCCCCCCCeEEEEECCCCC-EEEEEEcCCcEEEEeccCCeeEEEecc------------------
Q 003356 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQ------------------ 347 (827)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~-~Lasg~~Dg~v~vWs~~~~~l~~tl~~------------------ 347 (827)
+ +.....+.. |.++|.+++|+|++. +|++|+.|++|++||+.+++...+...
T Consensus 175 ~-~~~~~~~~~--------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 175 D-EGPILAGYP--------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp T-TEEEEEEEE--------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred C-CceeeeecC--------CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 7 666666666 899999999999875 899999999999999987765433221
Q ss_pred ------ccccceeeeeec-CCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEE-------------------
Q 003356 348 ------ISLSSISSPIVK-PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI------------------- 398 (827)
Q Consensus 348 ------~~~~~v~s~~~s-p~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~------------------- 398 (827)
.+...+.++.|+ |++ ..+++++ ++++|+...++....+..+...+..
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg----~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDG----SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGA 321 (393)
T ss_dssp ------CCSSSCSEEEEETTTT----CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCC
T ss_pred eeeecccccccceeeeeecCCC----CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeE
Confidence 113456667765 666 6777665 8899998877665544443322211
Q ss_pred -Eec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCc
Q 003356 399 -FSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (827)
Q Consensus 399 -~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg 474 (827)
+.+ +..+++|+.|+++++|++..+.. .....+|..+|++++|||||++||+|+.+|
T Consensus 322 ~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--------------------~~~~~~~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 322 CPHPRYMDYFATAHSQHGLIQLINTYEKDS--------------------NSIPIQLGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp EECSSCTTEEEEEETTTTEEEEEETTCTTC--------------------CEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred EEccCCCCEEEEEECCCCEEEEEECCCCcE--------------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 111 33567788899999998765544 345667888999999999999999999999
Q ss_pred eEEEEc
Q 003356 475 LILYDI 480 (827)
Q Consensus 475 ~iiwd~ 480 (827)
+++|.+
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 888865
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.91 E-value=8.1e-23 Score=229.16 Aligned_cols=233 Identities=17% Similarity=0.189 Sum_probs=184.8
Q ss_pred CcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEE
Q 003356 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVEL 282 (827)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~v 282 (827)
+...|.+++ +++||+.+++++.|+++++|+..+.+.. .+|...+. +++ ++.++++|+.|+++++
T Consensus 146 ~~~~V~sv~----------fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~ 213 (420)
T 4gga_A 146 PGEYISSVA----------WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHH 213 (420)
T ss_dssp TTCCEEEEE----------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred CCCcEEEEE----------ECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeE
Confidence 445677766 7789999999999999999998876544 67887765 554 6789999999999999
Q ss_pred EEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe----eEEEeccccccceeeeee
Q 003356 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR----LMSTIRQISLSSISSPIV 358 (827)
Q Consensus 283 w~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~----l~~tl~~~~~~~v~s~~~ 358 (827)
|+.......+..+.+ |...+..+.|+|+|+.+++++.|+.+++|+...+. .+.....| ...|.+++|
T Consensus 214 ~d~~~~~~~~~~~~~--------h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~-~~~V~~~~~ 284 (420)
T 4gga_A 214 HDVRVAEHHVATLSG--------HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAW 284 (420)
T ss_dssp EETTSSSCEEEEEEC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC-SSCEEEEEE
T ss_pred eeecccceeeEEecc--------cccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeeccc-CCceeeeee
Confidence 999875566677777 99999999999999999999999999999997654 23444455 678999999
Q ss_pred cCCCCCCccceee--cc---eeEEEccCCceEEEEecCCcceE-EEEec-ceeeee--cccCCCeeeeEEEEcCCeEEEE
Q 003356 359 KPNQDCKYEPLMS--GT---SMMQWDEYGYRLYAIEEGSSERV-LIFSF-GKCCLN--RGVSGMTYARQVIYGEDRLLVV 429 (827)
Q Consensus 359 sp~~~~~~~~l~s--g~---~i~~W~~~~~~l~~~~~~~~~~v-~~~~~-~~~~~s--~~~d~~~~~w~~~~~~~~~~~~ 429 (827)
+|.+. ..+++ |+ ++++|+..++++......+.... ..+.+ ++.+++ |+.|+.+++|++..+..
T Consensus 285 ~p~~~---~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~----- 356 (420)
T 4gga_A 285 CPWQS---NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK----- 356 (420)
T ss_dssp CTTCT---TEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE-----
T ss_pred CCCcc---cEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE-----
Confidence 99872 33333 32 79999999999988876655433 44444 555554 44789999998654332
Q ss_pred ecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCC
Q 003356 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 430 ~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~ 483 (827)
..++.+|..+|.+++|||||++||+||.||++ +||+...
T Consensus 357 ---------------v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 357 ---------------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp ---------------EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred ---------------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 45678999999999999999999999999999 9998653
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1.7e-22 Score=225.11 Aligned_cols=272 Identities=16% Similarity=0.219 Sum_probs=200.2
Q ss_pred EEecc-eEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeec
Q 003356 27 FKVNN-GLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQI 105 (827)
Q Consensus 27 fspdg-~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~ 105 (827)
+++++ .+++++.+++|+||+.. .+......... +.+.+.+++|+|||++||+++.||.|++|++..+...
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~-~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--- 169 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNAD-SGSVSALAETD-----ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL--- 169 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETT-TCCEEEEEECC-----TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE---
T ss_pred EeecCCCEEEEECCCeEEEeeCC-CCcEeEeeecC-----CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE---
Confidence 44443 46666688999999995 55544433221 3467899999999999999999999999998533211
Q ss_pred CCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceeccc
Q 003356 106 GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (827)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s 185 (827)
. .+.++...|.+++.+++.+++++.||.+++|+....... .
T Consensus 170 ----------~----------~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~------------------ 210 (401)
T 4aez_A 170 ----------R----------TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQ-I------------------ 210 (401)
T ss_dssp ----------E----------EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE-E------------------
T ss_pred ----------E----------EecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcce-e------------------
Confidence 1 123455678888888999999999999998655421111 0
Q ss_pred CCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-
Q 003356 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC- 261 (827)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~- 261 (827)
..+..+...|.+++ +++||+.+++++.|+.+++|+....+.. .+|...+.
T Consensus 211 ----------------~~~~~~~~~v~~~~----------~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 211 ----------------GTLQGHSSEVCGLA----------WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp ----------------EEEECCSSCEEEEE----------ECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred ----------------eEEcCCCCCeeEEE----------EcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence 01123445566665 6778888999999999999998765433 57787776
Q ss_pred EEEcCCC-CEEEEEe--cCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEE--EcCCcEEEEec
Q 003356 262 ASIAPEQ-QILAVGT--RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG--WKSRGLTVWSV 336 (827)
Q Consensus 262 va~sp~~-~lla~g~--~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg--~~Dg~v~vWs~ 336 (827)
++|+|++ .++++|+ .||.|++||+.+ ++.+..+. |.+.|.+++|+|||..|+++ +.||.|++|++
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD---------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE---------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe---------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 9999976 5777765 799999999988 77776664 56789999999999999995 48999999999
Q ss_pred cCCeeEEE--eccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEE
Q 003356 337 SGCRLMST--IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA 387 (827)
Q Consensus 337 ~~~~l~~t--l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~ 387 (827)
.++..... +.+| ...|.+++|+|++ ..+++++ .+.+|+..+++.+.
T Consensus 335 ~~~~~~~~~~~~~h-~~~v~~~~~s~dg----~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 335 SSSGLTKQVDIPAH-DTRVLYSALSPDG----RILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp ETTEEEEEEEEECC-SSCCCEEEECTTS----SEEEEECTTSEEEEEECCC-----
T ss_pred CCccceeEEEecCC-CCCEEEEEECCCC----CEEEEEeCCCcEEEEECCCCcccc
Confidence 98765544 5566 6789999999998 7777765 78899988776544
No 92
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.91 E-value=1.6e-23 Score=228.70 Aligned_cols=289 Identities=13% Similarity=0.172 Sum_probs=210.3
Q ss_pred CCcccEEEEEEcCCcceEEEEEeCC-cEEEEeeccCccccceeecccee--------cCCCCcEE-EEEcCC----CCEE
Q 003356 206 PISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAVC-ASIAPE----QQIL 271 (827)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG-~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~-va~sp~----~~ll 271 (827)
.+...|.+++|+|. ++|| ..++++..++.+++|+....+.. ..|...+. ++|+|+ +++|
T Consensus 16 ~h~~~v~~i~~~p~-------~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 16 DHNQPLFGVQFNWH-------SKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp TTCSCEEEEEECTT-------CCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred CCCCceEEEEEecc-------cCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 56678888887763 1122 23333334446667776644322 22556666 999999 7799
Q ss_pred EEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEe---cc
Q 003356 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTI---RQ 347 (827)
Q Consensus 272 a~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl---~~ 347 (827)
|+|+.||+|++||+.+ ++.+..+.+ |.++|.+++|+| ++++|++|+.||.|++||+.+++....+ .+
T Consensus 89 ~~~~~dg~i~v~d~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 159 (366)
T 3k26_A 89 AVAGSRGIIRIINPIT-MQCIKHYVG--------HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159 (366)
T ss_dssp EEEETTCEEEEECTTT-CCEEEEEES--------CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS
T ss_pred EEecCCCEEEEEEchh-ceEeeeecC--------CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc
Confidence 9999999999999988 788888887 999999999999 9999999999999999999999988888 45
Q ss_pred ccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEE----------------------------ecCCcceE
Q 003356 348 ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI----------------------------EEGSSERV 396 (827)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~----------------------------~~~~~~~v 396 (827)
| ...+.+++|+|++ ..++++. .+.+|+..+++.... ..+|...|
T Consensus 160 ~-~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 160 H-RDEVLSADYDLLG----EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp C-SSCEEEEEECTTS----SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred c-cCceeEEEECCCC----CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 5 6789999999998 7787775 899999987654322 22377777
Q ss_pred EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCC--CCEEEEEeCC
Q 003356 397 LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD--GMFLAVAGLH 473 (827)
Q Consensus 397 ~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Spd--G~~lavag~d 473 (827)
.++.+ ++.+++++.|+.+++|++......+...... . ........+..|..+|.+++|+|+ |++|++|+.|
T Consensus 235 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 235 DCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPS---E---SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp CEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTT---C---CCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT
T ss_pred EEEEEcCCEEEEEecCCEEEEEeCCCccccccccccC---C---cchheeccccccCCcEEEEEEcCCCCCcEEEEEecC
Confidence 66666 8899999999999999986544311000000 0 011223456678889999999999 9999999999
Q ss_pred ceE-EEEcCCCeE-----EeeCCccceEEEEEEEEEEeC--CEEEEEEEeeCCCcEEEEEeeC
Q 003356 474 GLI-LYDIRQKKW-----RVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPR 528 (827)
Q Consensus 474 g~i-iwd~~t~~w-----~~f~~~~~e~~~~v~gl~W~~--~~li~~~~~~~~~~~~lrly~~ 528 (827)
|.+ +||+.+++. ..+.. +.....|..++|.. ..+++++ .+..+++|..
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~-----~dg~i~iwd~ 364 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTH--HKCGAAIRQTSFSRDSSILIAVC-----DDASIWRWDR 364 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECC--TTCCSCEEEEEECTTSSEEEEEE-----TTSEEEEEEC
T ss_pred CcEEEEECCCCCCccccceEEcc--cccCCceEEEEeCCCCCeEEEEe-----CCCEEEEEEe
Confidence 999 999998742 12221 11123577899974 4666663 2357888875
No 93
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.91 E-value=4.3e-23 Score=232.54 Aligned_cols=274 Identities=14% Similarity=0.205 Sum_probs=213.1
Q ss_pred cccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcc
Q 003356 130 EKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISS 209 (827)
Q Consensus 130 ~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 209 (827)
++...|.|++.+++.+++|+.||.|++|+.. ..... ..+..+..
T Consensus 131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~--~~~~~----------------------------------~~~~~h~~ 174 (435)
T 1p22_A 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN--TLECK----------------------------------RILTGHTG 174 (435)
T ss_dssp SSCCCEEEEECCSSEEEEEESSSCEEEEESS--SCCEE----------------------------------EEECCCSS
T ss_pred CCCCcEEEEEECCCEEEEEeCCCeEEEEeCC--CCeEE----------------------------------EEEcCCCC
Confidence 3455789999999999999999999986543 21111 01123444
Q ss_pred cEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEc
Q 003356 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDL 285 (827)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~ 285 (827)
.|.++. .||+.+++++.|+++++|+..+++.. .+|...+. ++|+ +.++++|+.||+|++||+
T Consensus 175 ~v~~l~------------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~ 240 (435)
T 1p22_A 175 SVLCLQ------------YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDM 240 (435)
T ss_dssp CEEEEE------------CCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEEC
T ss_pred cEEEEE------------ECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeC
Confidence 565554 37889999999999999998776543 67888887 8886 459999999999999999
Q ss_pred CCCCcce---EEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 286 AESASLI---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 286 ~~~~~~~---~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
.+ .... ..+.+ |.+.|.+++| +|+.|++|+.||.|++||+.+++++.++.+| ...+.++.++ +
T Consensus 241 ~~-~~~~~~~~~~~~--------~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~ 306 (435)
T 1p22_A 241 AS-PTDITLRRVLVG--------HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYR--D 306 (435)
T ss_dssp SS-SSCCEEEEEECC--------CSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEE--T
T ss_pred CC-CCCceeeeEecC--------CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC-CCcEEEEEeC--C
Confidence 87 4443 34445 9999999999 8999999999999999999999999999887 6678888884 3
Q ss_pred CCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcce
Q 003356 363 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (827)
Q Consensus 363 ~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~ 438 (827)
..+++|+ .+.+|+..+++++..+.+|...|.++.+ ++.+++++.|+.+++|++..+.... ....
T Consensus 307 ----~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~------~~~~-- 374 (435)
T 1p22_A 307 ----RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR------APAG-- 374 (435)
T ss_dssp ----TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTT------SCTT--
T ss_pred ----CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCcc------cccc--
Confidence 5666665 8999999999999999999999998888 8899999999999999986654210 0000
Q ss_pred EEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 439 w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
......+.+|..+|.+++| ||++|++|+.||.+ +||+.++.
T Consensus 375 ---~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 375 ---TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp ---TTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred ---chheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 0013456789999999999 88999999999999 99998764
No 94
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.91 E-value=3e-22 Score=221.84 Aligned_cols=285 Identities=11% Similarity=0.069 Sum_probs=209.0
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe--ecC--
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSD-- 141 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~d-- 141 (827)
+.+.+.+++|+| ++||+++.||.|++|++......... .....+.++...|.++ .++
T Consensus 15 h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~-----------------~~~~~~~~h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 15 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK-----------------DKSYSHFVHKSGLHHVDVLQAIE 75 (397)
T ss_dssp SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG-----------------GGEEEEECCTTCEEEEEEEEEEE
T ss_pred hhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCC-----------------CcceEEecCCCcEEEEEEecccc
Confidence 457889999999 89999999999999999754311000 0001122334445544 555
Q ss_pred --C---CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCC-----cccE
Q 003356 142 --N---KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI-----SSAI 211 (827)
Q Consensus 142 --~---~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~-----~~~i 211 (827)
+ ..+++++.||.|++|+.+......... + ..+..+ ...|
T Consensus 76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~---------~----------------------~~~~~~~~~~~~~~v 124 (397)
T 1sq9_A 76 RDAFELCLVATTSFSGDLLFYRITREDETKKVI---------F----------------------EKLDLLDSDMKKHSF 124 (397)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEE---------E----------------------EEECCSCTTGGGSCE
T ss_pred cCCccccEEEEEcCCCCEEEEEccCCccccccc---------c----------------------eeecccccccCCCcE
Confidence 7 788999999999997655322100000 0 001111 3557
Q ss_pred EEEEEcCCcceEEEEE----eCCcE-EEEeeccCccccceeec------cce--------e-------cCCCCcEE-EEE
Q 003356 212 IWLELCLPMRLLFVLY----SNGQL-MSCSVSKKGLKLAEFIK------IDK--------E-------LGSGDAVC-ASI 264 (827)
Q Consensus 212 ~~i~~~~~~~~~~~~s----~dG~~-~~~~~~~~~~~~~~~~~------~~~--------~-------~~h~~~v~-va~ 264 (827)
.++. ++ ++|+. ++++..++.+++|+... .+. + ..|...+. ++|
T Consensus 125 ~~~~----------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 194 (397)
T 1sq9_A 125 WALK----------WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 194 (397)
T ss_dssp EEEE----------EECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE
T ss_pred EEEE----------EeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE
Confidence 6666 56 77887 88888888888888776 322 1 22555555 999
Q ss_pred cCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCC---CCCeEEEEECCCCCEEEEEEcC---CcEEEEeccC
Q 003356 265 APEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD---TGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSG 338 (827)
Q Consensus 265 sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h---~~~V~~l~~spDg~~Lasg~~D---g~v~vWs~~~ 338 (827)
+|++ ++++|+.||.|++||+.+ .+.+..+... .+| .++|.+++|+|||++|++++.| +.|++||+.+
T Consensus 195 ~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~-----~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 195 SERG-LIATGFNNGTVQISELST-LRPLYNFESQ-----HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp CTTS-EEEEECTTSEEEEEETTT-TEEEEEEECC-----C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred CCCc-eEEEEeCCCcEEEEECCC-CceeEEEecc-----ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 9999 999999999999999987 6666666531 126 8899999999999999999999 9999999999
Q ss_pred CeeEEEecc-------------ccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEec------CC----
Q 003356 339 CRLMSTIRQ-------------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE------GS---- 392 (827)
Q Consensus 339 ~~l~~tl~~-------------~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~------~~---- 392 (827)
++.+.++.. | ...+.+++|+|++ ..+++++ .+.+|+..+++++..+. +|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
T 1sq9_A 268 GERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSG----ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 342 (397)
T ss_dssp CCEEEEECBC--------CCBSB-SSCEEEEEECSSS----SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGC
T ss_pred CcccceeccCccccccccccccc-CCcEEEEEECCCC----CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhh
Confidence 999998887 6 6789999999998 7888776 89999999999998888 77
Q ss_pred -----------cceEEEEec---c----------eeeeecccCCCeeeeEEEEc
Q 003356 393 -----------SERVLIFSF---G----------KCCLNRGVSGMTYARQVIYG 422 (827)
Q Consensus 393 -----------~~~v~~~~~---~----------~~~~s~~~d~~~~~w~~~~~ 422 (827)
...|..+.+ + +.+++++.|+.+++|++..+
T Consensus 343 ~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 343 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred hccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 788866555 4 68999999999999998654
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.91 E-value=3.2e-23 Score=223.09 Aligned_cols=240 Identities=15% Similarity=0.113 Sum_probs=176.7
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCc--ceEEEEeecCCCCCCCCCCeEEEEECC--CCCEEEEEEcC
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKS 328 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~--~~~~l~~~~~~~~~~h~~~V~~l~~sp--Dg~~Lasg~~D 328 (827)
.+|.+.|. ++|+|+|++||+|+.|++|++||+.+ +. .+..+.+ |.++|.+++|+| +|++||+|+.|
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~-~~~~~~~~l~g--------H~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN-GGQILIADLRG--------HEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEET-TEEEEEEEEEC--------CSSCEEEEEECCGGGSSCEEEEETT
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecC-CCcEEEEEEcC--------CCccEEEEEeCCCCCCCEEEEEECC
Confidence 57999988 99999999999999999999999987 43 4567777 999999999987 49999999999
Q ss_pred CcEEEEeccCCe--eEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceE---EEEecCCcceEEE--
Q 003356 329 RGLTVWSVSGCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL---YAIEEGSSERVLI-- 398 (827)
Q Consensus 329 g~v~vWs~~~~~--l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l---~~~~~~~~~~v~~-- 398 (827)
++|++||+.++. ...++.+| ...|.+++|+|++. ...+++|+ ++++|+..+... .....+|...+..
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~--g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 81 RKVIIWREENGTWEKSHEHAGH-DSSVNSVCWAPHDY--GLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS 157 (316)
T ss_dssp SCEEEECCSSSCCCEEEEECCC-SSCCCEEEECCTTT--CSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred CEEEEEECCCCcceEEEEccCC-CCceEEEEECCCCC--CcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence 999999998763 55667777 67899999999831 16777776 899999876532 2334566666633
Q ss_pred Eec------------------ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEE
Q 003356 399 FSF------------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA 460 (827)
Q Consensus 399 ~~~------------------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~ 460 (827)
+++ ++.+++++.|+++++|++..+.. |. ....+.+|..+|++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--------------~~---~~~~l~~h~~~V~~v~~ 220 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--------------WK---EEQKLEAHSDWVRDVAW 220 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--------------EE---EEECCBCCSSCEEEEEC
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--------------cc---eeeecccCCCceEEEEe
Confidence 333 25789999999999999743221 11 13456789999999999
Q ss_pred cCCC----CEEEEEeCCceE-EEEcCC---CeEEeeCCccceEEEEEEEEEEeC--CEEEEEEEeeCCCcEEEEEeeCC
Q 003356 461 SKDG----MFLAVAGLHGLI-LYDIRQ---KKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 461 SpdG----~~lavag~dg~i-iwd~~t---~~w~~f~~~~~e~~~~v~gl~W~~--~~li~~~~~~~~~~~~lrly~~~ 529 (827)
+|++ ++||+|+.||.+ +|++.+ ++|... ..+...-.|..++|.. +.+++|+. +..+++|...
T Consensus 221 sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~--~~~~~~~~v~~v~~sp~g~~las~~~-----D~~v~lw~~~ 292 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPK--LLHKFNDVVWHVSWSITANILAVSGG-----DNKVTLWKES 292 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCC--EEEECSSCEEEEEECTTTCCEEEEES-----SSCEEEEEEC
T ss_pred cCCCCCCCceEEEEcCCCeEEEEEccCccccchhhh--hhhcCCCcEEEEEEcCCCCEEEEEcC-----CCeEEEEEEC
Confidence 9997 899999999999 999976 333210 0011122477889974 45666532 2468888764
No 96
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.8e-22 Score=221.39 Aligned_cols=245 Identities=16% Similarity=0.122 Sum_probs=192.3
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceee--ccce---ecCCCCcEE-EEEcCC--CCEEEEEec
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI--KIDK---ELGSGDAVC-ASIAPE--QQILAVGTR 276 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~--~~~~---~~~h~~~v~-va~sp~--~~lla~g~~ 276 (827)
..+...|.+++ +++||+.++++..++++++|+.. ..+. +.+|...+. ++|+|+ +++|++|+.
T Consensus 8 ~~h~~~v~~~~----------~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 8 NAHNELIHDAV----------LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp EECCCCEEEEE----------ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred cCCcccEEEEE----------EcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence 34556677766 77889999998889999999986 3222 367888887 999987 999999999
Q ss_pred CCeEEEEEcCCCCc--ceEEEEeecCCCCCCCCCCeEEEEECCC--CCEEEEEEcCCcEEEEeccCCe--eEEEeccccc
Q 003356 277 RGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISL 350 (827)
Q Consensus 277 dg~v~vw~~~~~~~--~~~~l~~~~~~~~~~h~~~V~~l~~spD--g~~Lasg~~Dg~v~vWs~~~~~--l~~tl~~~~~ 350 (827)
||+|++||+.+ ++ .+..+.. |.+.|.+++|+|+ |.+|++++.|+.|++||+..+. ....+..| .
T Consensus 78 dg~v~iwd~~~-~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~ 147 (379)
T 3jrp_A 78 DGKVLIWKEEN-GRWSQIAVHAV--------HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH-A 147 (379)
T ss_dssp TSCEEEEEEET-TEEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC-T
T ss_pred CCEEEEEEcCC-CceeEeeeecC--------CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC-C
Confidence 99999999987 54 4555555 8999999999999 9999999999999999998763 33445555 6
Q ss_pred cceeeeeecCC-------------CCCCccceeecc---eeEEEccCCc----eEEEEecCCcceEEEEec------cee
Q 003356 351 SSISSPIVKPN-------------QDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERVLIFSF------GKC 404 (827)
Q Consensus 351 ~~v~s~~~sp~-------------~~~~~~~l~sg~---~i~~W~~~~~----~l~~~~~~~~~~v~~~~~------~~~ 404 (827)
..+.+++|+|. + ..++++. .+.+|+..+. .+.....+|...|.++.+ ++.
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 223 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKES----RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 223 (379)
T ss_dssp TCEEEEEECCCC----------CTT----CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred CceEEEEEcCccccccccccCCCCC----CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCe
Confidence 78999999994 5 6677765 8999998654 355667788888865555 367
Q ss_pred eeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcC-C
Q 003356 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-Q 482 (827)
Q Consensus 405 ~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~-t 482 (827)
+++++.|+.+++|++..+..... ........|..+|.+++|+|||++|++++.||.+ +|++. .
T Consensus 224 l~s~~~dg~i~iwd~~~~~~~~~---------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 224 LASVSQDRTCIIWTQDNEQGPWK---------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEEETTSCEEEEEESSTTSCCE---------------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EEEEeCCCEEEEEeCCCCCccce---------------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 99999999999999876543100 0011233578899999999999999999999999 99997 4
Q ss_pred CeEEee
Q 003356 483 KKWRVF 488 (827)
Q Consensus 483 ~~w~~f 488 (827)
++|..+
T Consensus 289 ~~~~~~ 294 (379)
T 3jrp_A 289 GKWEPA 294 (379)
T ss_dssp TEEEEE
T ss_pred Cccccc
Confidence 567654
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.90 E-value=6.7e-22 Score=211.57 Aligned_cols=234 Identities=17% Similarity=0.180 Sum_probs=178.5
Q ss_pred CcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEEEEEcCCCCEEEEEecCCeEEEE
Q 003356 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (827)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~va~sp~~~lla~g~~dg~v~vw 283 (827)
+...|.++. ++++|+.+++++.|+++++|+..+++.. .+|...+ .++++++.++++|+.++.+++|
T Consensus 66 ~~~~V~~v~----------~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~-~~~~~~~~~l~s~~~~~~~~~~ 134 (318)
T 4ggc_A 66 PGEYISSVA----------WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-GSLSWNSYILSSGSRSGHIHHH 134 (318)
T ss_dssp TTCCEEEEE----------ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-EEEEEETTEEEEEETTSEEEEE
T ss_pred CCCeEEEEE----------ECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceE-EEeecCCCEEEEEecCCceEee
Confidence 444566655 7889999999999999999998876554 6777655 4456678899999999999999
Q ss_pred EcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee----EEEeccccccceeeeeec
Q 003356 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISLSSISSPIVK 359 (827)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l----~~tl~~~~~~~v~s~~~s 359 (827)
+.......+..+.+ |.+.+.+++|+++|++|++++.|++|++||+.+++. ......+ ...|.+++++
T Consensus 135 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 205 (318)
T 4ggc_A 135 DVRVAEHHVATLSG--------HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAWC 205 (318)
T ss_dssp ETTSSSCEEEEEEC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCC-CSCEEEEEEC
T ss_pred ecCCCceeEEEEcC--------ccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeeccc-CCceEEEEec
Confidence 98874566667777 999999999999999999999999999999976543 2233333 5678888998
Q ss_pred CCCCCCccceeecc---eeEEEccCCceEEEEecCCcceE--EEEec-ceeee--ecccCCCeeeeEEEEcCCeEEEEec
Q 003356 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCL--NRGVSGMTYARQVIYGEDRLLVVQS 431 (827)
Q Consensus 360 p~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~--s~~~d~~~~~w~~~~~~~~~~~~~~ 431 (827)
|++.. ...+.++. ++++|+............ ...+ ..+.+ ++.++ +++.|+++++|++..+..
T Consensus 206 ~~~~~-~~~~~~~~~~~~i~lwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~------- 276 (318)
T 4ggc_A 206 PWQSN-VLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK------- 276 (318)
T ss_dssp TTSTT-EEEEEECTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE-------
T ss_pred CCCCc-EEEEEecCCCCEEEEEecccccccccccc-eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE-------
Confidence 87621 01123343 789999988877665543 3334 44444 45444 455899999999654433
Q ss_pred CCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 432 ~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
..++.+|..+|++++|||||++||+||.||++ +||+..
T Consensus 277 -------------~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 277 -------------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp -------------EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred -------------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 45678999999999999999999999999999 999854
No 98
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=1.1e-21 Score=212.30 Aligned_cols=272 Identities=9% Similarity=0.055 Sum_probs=203.0
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEE--eecCCC
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNK 143 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d~~ 143 (827)
+.+.+.+++|+||+++||+++.||.|++|++........ .. . ...+...|.+ +.+++.
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~----------~~-------~---~~~~~~~v~~~~~~~~~~ 69 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD----------LL-------Q---SLRYKHPLLCCNFIDNTD 69 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE----------EE-------E---EEECSSCEEEEEEEESSS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc----------ce-------e---eeecCCceEEEEECCCCC
Confidence 347789999999999999999999999999975431100 00 0 1122334444 466788
Q ss_pred -eEEEEecCCcEEEEec-CCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCC--CcccEEEEEEcCC
Q 003356 144 -HMLLGLSDGSLYSISW-KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP--ISSAIIWLELCLP 219 (827)
Q Consensus 144 -~llv~t~dg~i~~~~w-~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~ 219 (827)
.+++++.||.|++|+. +... .. .+.. +...|.++.
T Consensus 70 ~~l~~~~~dg~i~~wd~~~~~~--~~-----------------------------------~~~~~~~~~~v~~l~---- 108 (342)
T 1yfq_A 70 LQIYVGTVQGEILKVDLIGSPS--FQ-----------------------------------ALTNNEANLGICRIC---- 108 (342)
T ss_dssp EEEEEEETTSCEEEECSSSSSS--EE-----------------------------------ECBSCCCCSCEEEEE----
T ss_pred cEEEEEcCCCeEEEEEeccCCc--eE-----------------------------------eccccCCCCceEEEE----
Confidence 8999999999998655 3221 11 1122 455677766
Q ss_pred cceEEEEEeCCcEEEEeeccCccccceeec---------ccee--cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCC
Q 003356 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIK---------IDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE 287 (827)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~---------~~~~--~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~ 287 (827)
+++ ++.+++++.++.+++|+... .+.. ..|...+. ++|+|++ +++|+.||.|++||+..
T Consensus 109 ------~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 109 ------KYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp ------EET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSC
T ss_pred ------eCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCc
Confidence 556 67777778888888888765 4322 33666666 9999988 99999999999999986
Q ss_pred -CCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCC------eeEEEecccc--------cc
Q 003356 288 -SASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC------RLMSTIRQIS--------LS 351 (827)
Q Consensus 288 -~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~------~l~~tl~~~~--------~~ 351 (827)
.......... .|...|.+++|+| ||+++++|+.||.+++|+...+ ....++..|. ..
T Consensus 180 ~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (342)
T 1yfq_A 180 CEDDNGTIEES-------GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252 (342)
T ss_dssp CTTCCCEEEEC-------SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC
T ss_pred cccccceeeec-------CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccce
Confidence 3332322222 2788999999999 9999999999999999999776 6777777762 23
Q ss_pred ceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCC-cceEEEEec-ceeeeecccCCC-eeeeE
Q 003356 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-SERVLIFSF-GKCCLNRGVSGM-TYARQ 418 (827)
Q Consensus 352 ~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~-~~~v~~~~~-~~~~~s~~~d~~-~~~w~ 418 (827)
.+.+++|+|++ ..++++. .+.+|+..+++++..+.+| ...|..+.+ ++.+++++.|++ .+.+.
T Consensus 253 ~i~~~~~s~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 253 PVNSIEFSPRH----KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CEEEEEECTTT----CCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred eEEEEEEcCCC----CEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCccccccc
Confidence 79999999998 7788776 8999999999999999888 888866556 888999999998 55444
No 99
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4e-23 Score=231.99 Aligned_cols=280 Identities=11% Similarity=0.076 Sum_probs=195.4
Q ss_pred EEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEE
Q 003356 136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (827)
Q Consensus 136 ~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 215 (827)
.++++||..++.++.|++|+ +++.... +..+...+.++.
T Consensus 21 v~~SpDG~~iASas~D~TV~----d~~~~~~-------------------------------------l~gh~~~v~~V~ 59 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG----QPKYAKD-------------------------------------INCNSKNLFHVK 59 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE----EECCCSC-------------------------------------CSSBGGGTEEEE
T ss_pred EEECCCCCEEEEEcCCceee----cccccce-------------------------------------ecCCCccEEEEE
Confidence 37789999999999999987 2222111 122344455544
Q ss_pred EcCCcceEEEEEeCCcEEEEeeccCccccceeecccee-cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceE
Q 003356 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (827)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~ 293 (827)
++||| .++..++|+....... ..|.+.+. ++|||+|++||+++.||+|++|+.+. ++.
T Consensus 60 ----------FsPdg-------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~ 119 (588)
T 2j04_A 60 ----------EFPLE-------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLT 119 (588)
T ss_dssp ----------EECCC-------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEE
T ss_pred ----------ECCCC-------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eee
Confidence 78888 4556666665433222 25677776 99999999999999999999999532 333
Q ss_pred EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe-------eEEEe----ccccccceeeeeecCCC
Q 003356 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-------LMSTI----RQISLSSISSPIVKPNQ 362 (827)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~-------l~~tl----~~~~~~~v~s~~~sp~~ 362 (827)
.+. +..+. ....|.+++|||||++||+|++||+|++|++.++. .+.++ .+| .+.|.+++|+|++
T Consensus 120 ~l~-~~~~~---~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh-~~~V~sVawSPdg 194 (588)
T 2j04_A 120 NLD-SKGNL---SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGS-KDWVTHIVWYEDV 194 (588)
T ss_dssp ECC-CSSCS---TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTC-CCCEEEEEEETTE
T ss_pred ecc-CCCcc---ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccc-cccEEEEEEcCCc
Confidence 322 10000 02369999999999999999999999999999885 36776 444 5799999999985
Q ss_pred CCCccceeecc---eeEEEccCCceE---EEEe-cCCcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCC
Q 003356 363 DCKYEPLMSGT---SMMQWDEYGYRL---YAIE-EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (827)
Q Consensus 363 ~~~~~~l~sg~---~i~~W~~~~~~l---~~~~-~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~ 434 (827)
+++++ ++++|+..+.++ +..+ .+|...|..+.| ++.+++++ ++++++|++..+..
T Consensus 195 ------Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~---------- 257 (588)
T 2j04_A 195 ------LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSI---------- 257 (588)
T ss_dssp ------EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEE----------
T ss_pred ------EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeE----------
Confidence 44443 899999988773 3455 467777855555 78888887 69999999543222
Q ss_pred CcceEEEeeeceeeccCCCcEEEEEE--cCCCCEEEEEeCCceEEEEcCC-----------------CeEEeeCCc--cc
Q 003356 435 DELKILHLNLPVSYISQNWPVQHVAA--SKDGMFLAVAGLHGLILYDIRQ-----------------KKWRVFGDI--TQ 493 (827)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~~~I~~va~--SpdG~~lavag~dg~iiwd~~t-----------------~~w~~f~~~--~~ 493 (827)
-....+|...|..++| ||||+.+++|++||.-+|.... +.|..-+++ .-
T Consensus 258 ----------~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~ 327 (588)
T 2j04_A 258 ----------SSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNY 327 (588)
T ss_dssp ----------EEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSS
T ss_pred ----------EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeeccEEECCCceEEEEcCCEEEEEECCCCceeee
Confidence 1112289999999999 9999999999999986666421 123321111 12
Q ss_pred eEEEEEEEEEEeCCE
Q 003356 494 EQKIQSKGLLWLGKI 508 (827)
Q Consensus 494 e~~~~v~gl~W~~~~ 508 (827)
+..+.|.++.+.++.
T Consensus 328 ~~~~~I~~va~SPdG 342 (588)
T 2j04_A 328 ETTLVIHGISLSPDG 342 (588)
T ss_dssp CCEEEEEEEEECTTS
T ss_pred ccceEEEEEEECCCC
Confidence 346678899998764
No 100
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.90 E-value=4.9e-22 Score=210.00 Aligned_cols=183 Identities=12% Similarity=0.092 Sum_probs=146.1
Q ss_pred CCCCEEEEEe--cCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC---CCCEEEEEEcCCcEEEEeccCCe
Q 003356 266 PEQQILAVGT--RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 266 p~~~lla~g~--~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp---Dg~~Lasg~~Dg~v~vWs~~~~~ 340 (827)
++++++.+++ .|++|++|++...++.+..+.+ |+..++.++|+| ||.+||+|+.|++|+|||+.+++
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~--------~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk 214 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL--------MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ 214 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE--------CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeecc--------CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc
Confidence 5777887755 6999999999664777778888 999999999999 78999999999999999999999
Q ss_pred eEEEeccccc--cceeeeeecCCCCCCccce------------eecc---eeEEEccCCceEEEEe-----cCCcceEEE
Q 003356 341 LMSTIRQISL--SSISSPIVKPNQDCKYEPL------------MSGT---SMMQWDEYGYRLYAIE-----EGSSERVLI 398 (827)
Q Consensus 341 l~~tl~~~~~--~~v~s~~~sp~~~~~~~~l------------~sg~---~i~~W~~~~~~l~~~~-----~~~~~~v~~ 398 (827)
++.++.+|+. ..+.+++|+|++ ..+ ++|+ +++.|++.+++++.+. .+|...++.
T Consensus 215 ~l~tL~g~~~~v~~v~~vafSpdG----~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~ls 290 (356)
T 2w18_A 215 LLKKMHIDDSYQASVCHKAYSEMG----LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLE 290 (356)
T ss_dssp EEEEEECCC---CCCEEEEEEETT----EEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEE
T ss_pred EEEEEcCCCcceeeeEEEEECCCC----CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEc
Confidence 9999986532 356677899988 443 4555 8899999999887654 366656655
Q ss_pred Eec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEE-EEEEcCCCCEEEEEeCCceE
Q 003356 399 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ-HVAASKDGMFLAVAGLHGLI 476 (827)
Q Consensus 399 ~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~-~va~SpdG~~lavag~dg~i 476 (827)
.++ +..+++++.|+++++|++.++.. ..++.+|...+. +++|||||++||+|+.|+++
T Consensus 291 g~~sg~~lASgS~DgTIkIWDl~tGk~--------------------l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 291 GDVKDHCAAAILTSGTIAIWDLLLGQC--------------------TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCSE--------------------EEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred cccCCCEEEEEcCCCcEEEEECCCCcE--------------------EEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 555 66789999999999999866554 456777876554 68999999999999999999
Q ss_pred -EEEc
Q 003356 477 -LYDI 480 (827)
Q Consensus 477 -iwd~ 480 (827)
+||+
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 9985
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.90 E-value=3.6e-22 Score=218.65 Aligned_cols=291 Identities=9% Similarity=0.041 Sum_probs=182.6
Q ss_pred cCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeE-
Q 003356 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM- 145 (827)
Q Consensus 67 ~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~l- 145 (827)
.+.+.+++|||||++||+++.+| +++|++...... . .. ......+.++..+++.+
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-------------~------~~----~~~~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-------------M------SQ----EMRHLSKVRMLHRTNYVA 74 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-------------E------EE----ECSCCCEEEECTTSSEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-------------e------ee----ecCCeEEEEEcCCCCEEE
Confidence 47889999999999999998886 689997532110 0 00 00123445666677766
Q ss_pred EEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEE
Q 003356 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (827)
Q Consensus 146 lv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (827)
++++.++.+++|+.. ...... . ......|.++.+++.
T Consensus 75 ~~~~~d~~v~iWd~~--~~~~~~------------~-----------------------~~~~~~v~~v~~~~~------ 111 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDV--KKQDVS------------R-----------------------IKVDAPVKDLFLSRE------ 111 (355)
T ss_dssp EECSSTTEEEEEETT--TTEEEE------------E-----------------------EECSSCEEEEEECSS------
T ss_pred EEECCccEEEEEECC--CCcEEE------------E-----------------------EECCCceEEEEEcCC------
Confidence 456677888885543 221110 0 011224666654432
Q ss_pred EEeCCcEEEEeeccCccccceeecc-ceecCCCCcEE-EEEcCCCCEEEE--EecCCeEEEEEcCCCCc-----------
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKI-DKELGSGDAVC-ASIAPEQQILAV--GTRRGVVELYDLAESAS----------- 290 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~-va~sp~~~lla~--g~~dg~v~vw~~~~~~~----------- 290 (827)
+ ++++ .++.+++|+.... +.......... +++++ .++|+ |+.||+|++||+.+ +.
T Consensus 112 ----~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~ 181 (355)
T 3vu4_A 112 ----F--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQQ 181 (355)
T ss_dssp ----E--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECCC--------------
T ss_pred ----E--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCccccccccccc
Confidence 1 1111 2455667776655 32211111223 67777 66666 68999999999987 33
Q ss_pred -----ceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCc-EEEEeccCCeeEEEec-cccccceeeeeecCCCC
Q 003356 291 -----LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG-LTVWSVSGCRLMSTIR-QISLSSISSPIVKPNQD 363 (827)
Q Consensus 291 -----~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~-v~vWs~~~~~l~~tl~-~~~~~~v~s~~~sp~~~ 363 (827)
.+..+.+ |.++|++++|+|||++||+|+.|++ |++||+.+++++.++. +.+...|.+++|+|++
T Consensus 182 ~~~~p~~~~~~~--------h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~- 252 (355)
T 3vu4_A 182 KAILGKGVLIKA--------HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG- 252 (355)
T ss_dssp -----CCEEECC--------CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS-
T ss_pred cccCcccEEEEc--------cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC-
Confidence 1455666 9999999999999999999999999 9999999999999998 4237889999999998
Q ss_pred CCccceeecc---eeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEE
Q 003356 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (827)
Q Consensus 364 ~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~ 440 (827)
..+++++ ++++|+......- . ...+.. .+.....+. .|.+ .
T Consensus 253 ---~~l~s~s~d~~v~iw~~~~~~~~------~--~~~~~~--~~~~~~~~~---~~~~--------------------~ 296 (355)
T 3vu4_A 253 ---SKLAVVSDKWTLHVFEIFNDQDN------K--RHALKG--WINMKYFQS---EWSL--------------------C 296 (355)
T ss_dssp ---CEEEEEETTCEEEEEESSCCSCC------C--SEETTT--TEECCCCCC---SSCS--------------------E
T ss_pred ---CEEEEEECCCEEEEEEccCCCCc------c--cccccc--eeecccccc---ccce--------------------e
Confidence 7787776 7888887653210 0 000000 000000000 0110 0
Q ss_pred EeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 441 HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 441 ~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
...++. .+..+...++|++||+++++++.||.+ +|++..
T Consensus 297 ~~~~~~---~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 297 NFKLSV---DKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEECCC---CTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EEEecc---CCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 011111 122345679999999999999999999 998754
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=5.7e-22 Score=214.62 Aligned_cols=275 Identities=13% Similarity=0.105 Sum_probs=190.4
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCcee---EEEEEEeChHhhhhcCcccEEEEcCCcc-EEEEEecCcEEEEEEE
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKV---RLGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFKV 96 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~---~l~~~~r~~~s~~~~G~~~~v~wSPDg~-~lav~t~dg~l~l~~v 96 (827)
...++|+|+|++|+++ .++.|+||+.. ... .+.... .+.+.+.+++|+||++ +|++++.||.|++|++
T Consensus 14 v~~~~~s~~~~~l~~~~~d~~v~iw~~~-~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 14 ISDIKIIPSKSLLLITSWDGSLTVYKFD-IQAKNVDLLQSL------RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEEEE-TTTTEEEEEEEE------ECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred EEEEEEcCCCCEEEEEcCCCeEEEEEeC-CCCccccceeee------ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 4558899999988888 57899999985 333 121111 2347789999999999 9999999999999998
Q ss_pred -EecCceeecCCCCCCCceeeeEeeEeeccccccc--ccceEEEeecC-CCeEEEEecCCcEEEEecCCccCcceeeccc
Q 003356 97 -QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAE--KGLSVSNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (827)
Q Consensus 97 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~~~d-~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~ 172 (827)
..+... .+.. +...|.++... ++.+++++.||.+++|+............
T Consensus 87 ~~~~~~~------------------------~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-- 140 (342)
T 1yfq_A 87 IGSPSFQ------------------------ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVK-- 140 (342)
T ss_dssp SSSSSEE------------------------ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEE--
T ss_pred ccCCceE------------------------eccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccccccccc--
Confidence 643211 0122 33445554332 78899999999999865432110000000
Q ss_pred CCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeec-cc
Q 003356 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK-ID 251 (827)
Q Consensus 173 p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~-~~ 251 (827)
... .....+...+.++.++ +++ ++++..++.+++|+... ..
T Consensus 141 ---~~~-----------------------~~~~~~~~~v~~~~~~----------~~~--l~~~~~d~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 141 ---NLN-----------------------SNNTKVKNKIFTMDTN----------SSR--LIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp ---ESC-----------------------SSSSSSCCCEEEEEEC----------SSE--EEEEESTTEEEEEESSCCTT
T ss_pred ---CCe-----------------------eeEEeeCCceEEEEec----------CCc--EEEEeCCCeEEEEECCcccc
Confidence 000 0011134557777644 444 55566666777777765 32
Q ss_pred e-----ecCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCC-----CcceEEEEeecC-CCCCCCCCCeEEEEECCC
Q 003356 252 K-----ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDW-GYSMDDTGPVSCIAWTPD 318 (827)
Q Consensus 252 ~-----~~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~-----~~~~~~l~~~~~-~~~~~h~~~V~~l~~spD 318 (827)
. ...|...+. ++|+| +++++++|+.||.|++|+++.. ......+..... ....+|.++|.+++|+||
T Consensus 183 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 262 (342)
T 1yfq_A 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262 (342)
T ss_dssp CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT
T ss_pred ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCC
Confidence 1 145666666 99999 9999999999999999999873 266677776211 011124559999999999
Q ss_pred CCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 003356 319 NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 319 g~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
|++|++|+.||.|++||+.+++++.++.+|+...|.+++ |++ ..+++++
T Consensus 263 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~----~~l~s~s 311 (342)
T 1yfq_A 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD----NILCLAT 311 (342)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS----SEEEEEE
T ss_pred CCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC----CeEEEEe
Confidence 999999999999999999999999999887567788888 777 6777665
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.90 E-value=1.7e-22 Score=224.98 Aligned_cols=268 Identities=13% Similarity=0.127 Sum_probs=200.5
Q ss_pred EEEEeCCcEEEE-eeccCccccceeeccc-------eecCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCC----
Q 003356 224 FVLYSNGQLMSC-SVSKKGLKLAEFIKID-------KELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESA---- 289 (827)
Q Consensus 224 ~~~s~dG~~~~~-~~~~~~~~~~~~~~~~-------~~~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~---- 289 (827)
+.++++...+++ ++.++.+++|+..... .+.+|...+. ++|+| ++++||+|+.||+|++|++.+..
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence 445566555443 4567788888864321 2357998888 99999 99999999999999999998732
Q ss_pred --cceEEEEeecCCCCCCCCCCeEEEEECCCC-CEEEEEEcCCcEEEEeccCCeeEEEe--ccccccceeeeeecCCCCC
Q 003356 290 --SLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTI--RQISLSSISSPIVKPNQDC 364 (827)
Q Consensus 290 --~~~~~l~~~~~~~~~~h~~~V~~l~~spDg-~~Lasg~~Dg~v~vWs~~~~~l~~tl--~~~~~~~v~s~~~sp~~~~ 364 (827)
..+..+.+ |.+.|.+++|+|+| ++|++|+.|+.|++||+.+++...++ ..| ...+.+++|+|++
T Consensus 120 ~~~~~~~~~~--------h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~-- 188 (402)
T 2aq5_A 120 LREPVITLEG--------HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH-PDTIYSVDWSRDG-- 188 (402)
T ss_dssp BCSCSEEEEC--------CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC-CSCEEEEEECTTS--
T ss_pred cCCceEEecC--------CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC-CCceEEEEECCCC--
Confidence 45667777 99999999999998 69999999999999999999999998 556 6789999999998
Q ss_pred Cccceeecc---eeEEEccCCceEEEEe-cCCcce-E--EEEec-ceeeeec---ccCCCeeeeEEEEcCCeEEEEecCC
Q 003356 365 KYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSER-V--LIFSF-GKCCLNR---GVSGMTYARQVIYGEDRLLVVQSED 433 (827)
Q Consensus 365 ~~~~l~sg~---~i~~W~~~~~~l~~~~-~~~~~~-v--~~~~~-~~~~~s~---~~d~~~~~w~~~~~~~~~~~~~~~d 433 (827)
..+++++ .+.+|+..+++..... .+|... + ..+++ ++.++++ +.|+.+++|++......+
T Consensus 189 --~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~------- 259 (402)
T 2aq5_A 189 --ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL------- 259 (402)
T ss_dssp --SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS-------
T ss_pred --CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc-------
Confidence 7888776 8999999999988877 666654 4 55555 7788888 789999999976554410
Q ss_pred CCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEe-CCceE-EEEcCCCe--EEeeCCccceEEEEEEEEEEeCCEE
Q 003356 434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKII 509 (827)
Q Consensus 434 ~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag-~dg~i-iwd~~t~~--w~~f~~~~~e~~~~v~gl~W~~~~l 509 (827)
......|...+.+++|+|||++++++| .||.+ +||+.+++ ...+.... ....+.+++|..+..
T Consensus 260 -----------~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~--~~~~v~~~~~sp~~~ 326 (402)
T 2aq5_A 260 -----------SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS--SKESQRGMGYMPKRG 326 (402)
T ss_dssp -----------EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC--CSSCCSEEEECCGGG
T ss_pred -----------eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc--cCCcccceEEecccc
Confidence 111235667899999999999997655 69999 99999876 33321111 112366788876533
Q ss_pred EEEEEeeCCCcEEEEEeeCC
Q 003356 510 VVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 510 i~~~~~~~~~~~~lrly~~~ 529 (827)
+.+ .....+++|...
T Consensus 327 ~~~-----s~~~~~~~~~l~ 341 (402)
T 2aq5_A 327 LEV-----NKCEIARFYKLH 341 (402)
T ss_dssp SCG-----GGTEEEEEEEEE
T ss_pred cce-----ecceeEEEEEcC
Confidence 322 122367777653
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.89 E-value=6.2e-22 Score=222.99 Aligned_cols=260 Identities=12% Similarity=0.184 Sum_probs=202.6
Q ss_pred EEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCc
Q 003356 74 VWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGS 153 (827)
Q Consensus 74 ~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~ 153 (827)
++++|++.+++++.||.|++||+...... ..+.++...|.+++.+++.+++|+.||.
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~-----------------------~~~~~h~~~v~~l~~~~~~l~sg~~dg~ 194 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECK-----------------------RILTGHTGSVLCLQYDERVIITGSSDST 194 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEE-----------------------EEECCCSSCEEEEECCSSEEEEEETTSC
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEE-----------------------EEEcCCCCcEEEEEECCCEEEEEcCCCe
Confidence 45569999999999999999997543211 1134556688899999999999999999
Q ss_pred EEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEE
Q 003356 154 LYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM 233 (827)
Q Consensus 154 i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~ 233 (827)
|++|+.+... .. ..+..+...|.++.+ ++..+
T Consensus 195 i~vwd~~~~~--~~----------------------------------~~~~~h~~~v~~l~~------------~~~~l 226 (435)
T 1p22_A 195 VRVWDVNTGE--ML----------------------------------NTLIHHCEAVLHLRF------------NNGMM 226 (435)
T ss_dssp EEEEESSSCC--EE----------------------------------EEECCCCSCEEEEEC------------CTTEE
T ss_pred EEEEECCCCc--EE----------------------------------EEEcCCCCcEEEEEE------------cCCEE
Confidence 9997654221 11 011233445666653 34577
Q ss_pred EEeeccCccccceeeccce------ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCC
Q 003356 234 SCSVSKKGLKLAEFIKIDK------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (827)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~------~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h 306 (827)
++++.++++++|+...... ..+|...+. +++ +++++++|+.||+|++||+.+ ++.+..+.+ |
T Consensus 227 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~--------~ 295 (435)
T 1p22_A 227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST-CEFVRTLNG--------H 295 (435)
T ss_dssp EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT-CCEEEEEEC--------C
T ss_pred EEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc-CcEEEEEcC--------C
Confidence 7788888888898765432 267888876 777 789999999999999999998 788888887 9
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCc
Q 003356 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY 383 (827)
Q Consensus 307 ~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~ 383 (827)
.+.|.+++| ++..+++|+.||.|++||+.++.++.++.+| ...+.++++ ++ ..+++|+ .+.+|+..++
T Consensus 296 ~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~--~~----~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 296 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH-EELVRCIRF--DN----KRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEC--CS----SEEEEEETTSCEEEEEHHHH
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC-cCcEEEEEe--cC----CEEEEEeCCCcEEEEECCCC
Confidence 999999999 5789999999999999999999999999887 678999988 44 6677776 8999998766
Q ss_pred e---------EEEEecCCcceEEEEec-ceeeeecccCCCeeeeEEEEcCC
Q 003356 384 R---------LYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGED 424 (827)
Q Consensus 384 ~---------l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~ 424 (827)
+ +.....+|...|..+.+ ++.+++++.|+++++|++.....
T Consensus 367 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 367 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp TSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC------
T ss_pred CCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCC
Confidence 5 78888899999977777 88899999999999999876544
No 105
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=229.17 Aligned_cols=245 Identities=10% Similarity=0.150 Sum_probs=179.7
Q ss_pred CcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccc--------------eecCCC------------CcE
Q 003356 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--------------KELGSG------------DAV 260 (827)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~--------------~~~~h~------------~~v 260 (827)
+...|.+++ +++||++++++..|+.+++|+....+ .+.+|. ..+
T Consensus 27 ~~~~V~~v~----------~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 27 EADIISTVE----------FNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp GGGSEEEEE----------ECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred ccCcEEEEE----------ECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCce
Confidence 345677766 77888888888888888999877543 236786 666
Q ss_pred E-EEEcCCC--CEEEEEecCCeEEEEEcCCCCcceEE------------------------EE--------eecCCCCCC
Q 003356 261 C-ASIAPEQ--QILAVGTRRGVVELYDLAESASLIRT------------------------VS--------LYDWGYSMD 305 (827)
Q Consensus 261 ~-va~sp~~--~lla~g~~dg~v~vw~~~~~~~~~~~------------------------l~--------~~~~~~~~~ 305 (827)
. ++|+|++ .++++|+.||+|++|++.+ ...... +. .....+..+
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISE-RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEE-EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEeccc-ccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 6 9999998 8999999999999999875 222100 00 000001235
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCcEEEEecc-CCeeEEE-------eccccccceeeeeecCCCCCCccceeecc---e
Q 003356 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMST-------IRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (827)
Q Consensus 306 h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~-~~~l~~t-------l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~ 374 (827)
|.+.|.+++|+|||++|++| .|+.|++||+. +++.+.. +.+| ...|.+++|+|++. ..+++|+ .
T Consensus 176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~---~~l~s~~~dg~ 250 (447)
T 3dw8_B 176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEEL-TEVITAAEFHPNSC---NTFVYSSSKGT 250 (447)
T ss_dssp CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGC-CCCEEEEEECSSCT---TEEEEEETTSC
T ss_pred CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccccc-CcceEEEEECCCCC---cEEEEEeCCCe
Confidence 99999999999999999999 79999999998 4555553 3455 67899999999851 4566665 8
Q ss_pred eEEEccCCceE----EEEecCCcc------------eEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCC
Q 003356 375 MMQWDEYGYRL----YAIEEGSSE------------RVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (827)
Q Consensus 375 i~~W~~~~~~l----~~~~~~~~~------------~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~ 435 (827)
+++|+..+++. ...+.+|.. .|..+.+ ++.+++++. +++++|++......
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~---------- 319 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP---------- 319 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC----------
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc----------
Confidence 99999988876 667777665 6755554 788898888 99999997652221
Q ss_pred cceEEEeeeceeeccCCCc---------------EEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEe
Q 003356 436 ELKILHLNLPVSYISQNWP---------------VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (827)
Q Consensus 436 ~~~w~~~~~p~~~~~~~~~---------------I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~ 487 (827)
...+.+|... +..++|+|||++|++|+.||.+ +||+.+++...
T Consensus 320 ---------~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 320 ---------VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp ---------SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred ---------cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 3344445321 3349999999999999999999 99999987543
No 106
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1e-20 Score=214.01 Aligned_cols=274 Identities=13% Similarity=0.058 Sum_probs=191.5
Q ss_pred CceEEEEEecceEEEEEccCeEEEeecCCcee---EEEEEEeChH------------------h----------------
Q 003356 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKV---RLGKYKRDSE------------------S---------------- 63 (827)
Q Consensus 21 ~~~vv~fspdg~lla~~~~~~v~IW~~~~~~~---~l~~~~r~~~------------------s---------------- 63 (827)
+-..|+|||||++|+++.++.|.+|+.. .+. .+........ .
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQ-SPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEE-TTTEEEEEEEEECCC------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECC-CCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 3466889999998888888999999984 554 4443331100 0
Q ss_pred --------------hhhcCcccEEEEcCCccEE-EEEecCcEEEEEEEE--ecCceeecCCCCCCCceeeeEeeEeeccc
Q 003356 64 --------------VQREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQ--ITEKSIQIGGKQPSGLFFIKISLVLNEQL 126 (827)
Q Consensus 64 --------------~~~~G~~~~v~wSPDg~~l-av~t~dg~l~l~~v~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (827)
-...+.+.+++|+|||++| |+++.||.|++|++. .+.. +..+ ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-------------~~~~----~~-- 145 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-------------LKLR----KR-- 145 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-------------EEEE----EE--
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-------------eeee----ec--
Confidence 0012358899999999996 888899999999996 3221 1111 00
Q ss_pred ccccccceEE--EeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceecccc
Q 003356 127 PFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK 204 (827)
Q Consensus 127 ~~~~~~~~v~--~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~ 204 (827)
......+. ++.+++..|++++.+|.+..|+.......... . ..+
T Consensus 146 --~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~----------~----------------------~~~ 191 (450)
T 2vdu_B 146 --FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT----------Q----------------------EPI 191 (450)
T ss_dssp --EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC----------C----------------------CCS
T ss_pred --ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc----------c----------------------eee
Confidence 01122333 45678889999999999987654322111000 0 011
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeC---CcEEEEeeccCccccceeecccee----cCCCCcEE-EEEcCCCCEEEEEec
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSN---GQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVGTR 276 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~d---G~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~-va~sp~~~lla~g~~ 276 (827)
..+...|.++. ++|| |+++++++.|+++++|+....+.. .+|...+. ++|+ ++++|++|+.
T Consensus 192 ~~h~~~v~~~~----------~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~ 260 (450)
T 2vdu_B 192 LGHVSMLTDVH----------LIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGG 260 (450)
T ss_dssp EECSSCEEEEE----------EEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEES
T ss_pred ecccCceEEEE----------EcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeC
Confidence 22344566655 7888 999999999999999998765432 47888887 9999 9999999999
Q ss_pred CCeEEEEEcCCCCcceEEEEeecC--C---------------CCCCCCCCeEEEEECCCCCEEEEEE-cCCcEEEEec--
Q 003356 277 RGVVELYDLAESASLIRTVSLYDW--G---------------YSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSV-- 336 (827)
Q Consensus 277 dg~v~vw~~~~~~~~~~~l~~~~~--~---------------~~~~h~~~V~~l~~spDg~~Lasg~-~Dg~v~vWs~-- 336 (827)
|++|++||+.+ ++.+..+..... . ........|.+++|+|||++|++++ .|+.|++|++
T Consensus 261 d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~ 339 (450)
T 2vdu_B 261 DDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSE 339 (450)
T ss_dssp SSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECS
T ss_pred CCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEecc
Confidence 99999999998 777776653210 0 0002346799999999999999999 8999999999
Q ss_pred cCC---eeEEEeccccccceeeeeecCCC
Q 003356 337 SGC---RLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 337 ~~~---~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
..+ ..+.++..+ ..+.+++|+|++
T Consensus 340 ~~~~~l~~~~~~~~~--~~v~~~~~~~~~ 366 (450)
T 2vdu_B 340 KQKGDLALKQIITFP--YNVISLSAHNDE 366 (450)
T ss_dssp SSTTCEEEEEEEECS--SCEEEEEEETTE
T ss_pred CCCCceeeccEeccC--CceEEEEecCCc
Confidence 555 566677665 568888888853
No 107
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.89 E-value=1.4e-21 Score=216.66 Aligned_cols=320 Identities=11% Similarity=0.097 Sum_probs=189.7
Q ss_pred ceEEEEEe-cceEEEEEc-cCeEEEeecCCceeEEEEEE------eChHhh-hhcCcccEEEEcC-CccEEEEEecCcEE
Q 003356 22 QQIIYFKV-NNGLLLIAS-PCHIELWSSSQHKVRLGKYK------RDSESV-QREGENLQAVWSP-DTKLIAVVTSSLYL 91 (827)
Q Consensus 22 ~~vv~fsp-dg~lla~~~-~~~v~IW~~~~~~~~l~~~~------r~~~s~-~~~G~~~~v~wSP-Dg~~lav~t~dg~l 91 (827)
...++|+| +|++||+++ ++.|+||+.. ......... ...... .+.+.+.+++|+| ++++|++++.||.|
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 124 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLE-NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL 124 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECC-CCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECC-CCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence 45589999 999999884 7889999995 332211111 000001 1457889999999 88899999999999
Q ss_pred EEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeec---CCCeEEEEecCCcEEEEecCCccCccee
Q 003356 92 HIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS---DNKHMLLGLSDGSLYSISWKGEFYGAFE 168 (827)
Q Consensus 92 ~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~---d~~~llv~t~dg~i~~~~w~~~~~~~~~ 168 (827)
++|++......... . .... ....++.+ ++..+++++.+|.+.+|+.......
T Consensus 125 ~iwd~~~~~~~~~~-----------------~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--- 179 (408)
T 4a11_B 125 KVWDTNTLQTADVF-----------------N----FEET-VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS--- 179 (408)
T ss_dssp EEEETTTTEEEEEE-----------------E----CSSC-EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC---
T ss_pred EEeeCCCCccceec-----------------c----CCCc-eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee---
Confidence 99998643211100 0 0110 11112222 4458999999999998765422111
Q ss_pred ecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCc-EEEEeeccCcccccee
Q 003356 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEF 247 (827)
Q Consensus 169 l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~~~~~~~~~~ 247 (827)
..+..+...|.++. ++|+|+ +++++..++.+++|+.
T Consensus 180 ---------------------------------~~~~~~~~~v~~~~----------~~~~~~~ll~~~~~dg~i~i~d~ 216 (408)
T 4a11_B 180 ---------------------------------HILQGHRQEILAVS----------WSPRYDYILATASADSRVKLWDV 216 (408)
T ss_dssp ---------------------------------EEECCCCSCEEEEE----------ECSSCTTEEEEEETTSCEEEEET
T ss_pred ---------------------------------eeecCCCCcEEEEE----------ECCCCCcEEEEEcCCCcEEEEEC
Confidence 01123445677766 556666 5667777777777876
Q ss_pred eccce-------------------ecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCC
Q 003356 248 IKIDK-------------------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (827)
Q Consensus 248 ~~~~~-------------------~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~ 307 (827)
..... ..+|...+. ++|+|++++|++|+.||.|++||+.+ ++.......... ....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~---~~~~ 292 (408)
T 4a11_B 217 RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN-GENTLVNYGKVC---NNSK 292 (408)
T ss_dssp TCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCBCCCCCCCCC---CCCS
T ss_pred CCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC-Cccceecccccc---cccc
Confidence 54320 135777777 99999999999999999999999987 544332222110 0112
Q ss_pred CCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCce
Q 003356 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR 384 (827)
Q Consensus 308 ~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~ 384 (827)
..+........+..+++++.|+.|++||+.+++++.++.+| ...|.+++|+|++ ..+++++ .+.+|+..+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~----~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH-YKTVDCCVFQSNF----QELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC-SSCEEEEEEETTT----TEEEEEETTSCEEEEEECC--
T ss_pred ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC-CCeEEEEEEcCCC----CEEEEECCCCeEEEEeCCCCC
Confidence 22333333344556667777899999999999999999888 6789999999998 8888876 89999999988
Q ss_pred EEEEecCCcceEEEEec--ceeeeecccCCCeeeeEEE
Q 003356 385 LYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVI 420 (827)
Q Consensus 385 l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~ 420 (827)
.+......... ..+.+ .....+.+.++.+++|...
T Consensus 368 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 368 PVPDDDETTTK-SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp --------------------------------------
T ss_pred ccCCCCceEec-cccccccceeecccCccCceeecCCc
Confidence 76554332211 22222 3444566778888888754
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.6e-21 Score=213.92 Aligned_cols=240 Identities=12% Similarity=0.112 Sum_probs=186.9
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCC-CcceEEEEeecCCCCCCCCCCeEEEEECCC--CCEEEEEEcCC
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR 329 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spD--g~~Lasg~~Dg 329 (827)
.+|...+. ++|+|++++||+|+.||+|++|++... ...+..+.+ |.++|++++|+|+ +++|++|+.||
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecC--------CCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 57888887 999999999999999999999999741 345566666 9999999999987 99999999999
Q ss_pred cEEEEeccCCe--eEEEeccccccceeeeeecCC--CCCCccceeecc---eeEEEccCCce--EEEEecCCcceEEEEe
Q 003356 330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGYR--LYAIEEGSSERVLIFS 400 (827)
Q Consensus 330 ~v~vWs~~~~~--l~~tl~~~~~~~v~s~~~sp~--~~~~~~~l~sg~---~i~~W~~~~~~--l~~~~~~~~~~v~~~~ 400 (827)
.|++||+.+++ ....+..| ...+.+++|+|+ + ..++++. .+.+|+..+.. ......+|...|..+.
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred EEEEEEcCCCceeEeeeecCC-CcceEEEEeCCCCCC----CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 99999999887 66667666 678999999998 6 6777765 89999997763 3345567777785554
Q ss_pred c----------------ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCC-
Q 003356 401 F----------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD- 463 (827)
Q Consensus 401 ~----------------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Spd- 463 (827)
+ ++.+++++.|+.+++|++..+.... .+...+.+|..+|.+++|+|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------~~~~~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEEEEECCCC
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce----------------eeEEEEecccCcEeEEEECCCC
Confidence 4 4678999999999999987655421 123456689999999999999
Q ss_pred --CCEEEEEeCCceE-EEEcCCCe----EEeeCCccceEEEEEEEEEEeCC--EEEEEEEeeCCCcEEEEEeeCC
Q 003356 464 --GMFLAVAGLHGLI-LYDIRQKK----WRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 464 --G~~lavag~dg~i-iwd~~t~~----w~~f~~~~~e~~~~v~gl~W~~~--~li~~~~~~~~~~~~lrly~~~ 529 (827)
|+++++++.||.+ +||+.++. ...+.... ....+..++|..+ .+++++. +..+++|...
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~-----dg~i~iw~~~ 286 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK--FPDVLWRASWSLSGNVLALSGG-----DNKVTLWKEN 286 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC--CSSCEEEEEECSSSCCEEEEES-----SSSEEEEEEE
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCCccceeeeecccc--CCCcEEEEEEcCCCCEEEEecC-----CCcEEEEeCC
Confidence 9999999999999 99999873 23332211 2234778889644 5666533 2458888764
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.89 E-value=1.8e-21 Score=209.99 Aligned_cols=289 Identities=12% Similarity=0.086 Sum_probs=185.1
Q ss_pred hcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEee--c--C
Q 003356 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--S--D 141 (827)
Q Consensus 66 ~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~--~--d 141 (827)
+.+.+.+++|+|||++||+++.||.|++|++....... .....+.++...|.+++ + +
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW-------------------ELSDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-------------------EEEEEEECCSSCEEEEEECCGGG
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-------------------eecceeccCCCcEEEEEEcCCCC
Confidence 34788999999999999999999999999997433110 00111234455666664 3 4
Q ss_pred CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcc
Q 003356 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (827)
Q Consensus 142 ~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (827)
+..+++++.||.+++|+.+........ .... ....+..+...|.++.
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~--------~~~~-------------------~~~~~~~~~~~v~~~~------ 117 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSG--------RRWN-------------------KLCTLNDSKGSLYSVK------ 117 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSS--------CSEE-------------------EEEEECCCSSCEEEEE------
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccc--------cCcc-------------------eeeeecccCCceeEEE------
Confidence 778999999999999776543211100 0000 0011233455677766
Q ss_pred eEEEEEeC--CcEEEEeeccCccccceeecccee----------------cCCCCcEE-EEEcCC---CCEEEEEecCCe
Q 003356 222 LLFVLYSN--GQLMSCSVSKKGLKLAEFIKIDKE----------------LGSGDAVC-ASIAPE---QQILAVGTRRGV 279 (827)
Q Consensus 222 ~~~~~s~d--G~~~~~~~~~~~~~~~~~~~~~~~----------------~~h~~~v~-va~sp~---~~lla~g~~dg~ 279 (827)
++++ |+.++++..++.+++|+....+.. .+|...+. ++|+|+ +.++++|+.|+.
T Consensus 118 ----~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 193 (351)
T 3f3f_A 118 ----FAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA 193 (351)
T ss_dssp ----ECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE
T ss_pred ----EcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc
Confidence 5566 777777777777777876544321 14555555 999997 999999999999
Q ss_pred EEEEEcCCCCcc--eEEEEeecCCCCCCCCCCeEEEEECCCC----CEEEEEEcCCcEEEEeccCCeeEEEeccccccce
Q 003356 280 VELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDN----SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (827)
Q Consensus 280 v~vw~~~~~~~~--~~~l~~~~~~~~~~h~~~V~~l~~spDg----~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v 353 (827)
+.+|+... +.. +..+.+ |.++|++++|+|+| ++|++|+.||.|++||+..+......... ....
T Consensus 194 ~~~~~~~~-~~~~~~~~~~~--------h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~ 263 (351)
T 3f3f_A 194 IIYQRGKD-GKLHVAAKLPG--------HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEES-LTNS 263 (351)
T ss_dssp EEEEECTT-SCEEEEEECCC--------CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------
T ss_pred EEEEccCC-CceeeeeecCC--------CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCc-ccce
Confidence 98887765 443 344444 99999999999998 89999999999999999876543332221 1111
Q ss_pred eeeeecCCCCCCccceeec-------ceeEEEccCCceEEEEecCCcceEEEEec---ceeeeecccCCCeeeeEEEEcC
Q 003356 354 SSPIVKPNQDCKYEPLMSG-------TSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGE 423 (827)
Q Consensus 354 ~s~~~sp~~~~~~~~l~sg-------~~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~ 423 (827)
.....++.. .....+ .....|+....+++....+|...|..+.+ ++.+++++.|+.+++|++..+.
T Consensus 264 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 264 NMFDNSADV----DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp -------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eccCCCccc----ccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 222222221 111111 14456666667788888899999966665 7889999999999999986544
Q ss_pred C
Q 003356 424 D 424 (827)
Q Consensus 424 ~ 424 (827)
.
T Consensus 340 ~ 340 (351)
T 3f3f_A 340 E 340 (351)
T ss_dssp C
T ss_pred c
Confidence 3
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.89 E-value=1.2e-21 Score=218.13 Aligned_cols=239 Identities=11% Similarity=0.137 Sum_probs=184.0
Q ss_pred CCCcccEEEEEEcCCcceEEEEEe-CCcEEEEeeccCccccceeeccc----------eecCCCCcEE-EEEcCCC-CEE
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAVC-ASIAPEQ-QIL 271 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~~~~~~~~~~~~~~----------~~~~h~~~v~-va~sp~~-~ll 271 (827)
..+...|.+++ +++ +++++++++.|+++++|+..... .+.+|...+. ++|+|++ .+|
T Consensus 78 ~~h~~~V~~~~----------~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l 147 (402)
T 2aq5_A 78 CGHTAPVLDIA----------WCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVL 147 (402)
T ss_dssp CCCSSCEEEEE----------ECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEE
T ss_pred ecCCCCEEEEE----------eCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEE
Confidence 34566788877 556 77888888888888889877642 2367888887 9999998 699
Q ss_pred EEEecCCeEEEEEcCCCCcceEEE--EeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEe-ccc
Q 003356 272 AVGTRRGVVELYDLAESASLIRTV--SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI-RQI 348 (827)
Q Consensus 272 a~g~~dg~v~vw~~~~~~~~~~~l--~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl-~~~ 348 (827)
++|+.||+|++||+.+ ++.+..+ .. |.+.|.+++|+|||+.|++|+.||.|++||+.+++.+.++ ..|
T Consensus 148 ~s~~~dg~i~iwd~~~-~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 218 (402)
T 2aq5_A 148 LSAGCDNVILVWDVGT-GAAVLTLGPDV--------HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH 218 (402)
T ss_dssp EEEETTSCEEEEETTT-TEEEEEECTTT--------CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred EEEcCCCEEEEEECCC-CCccEEEecCC--------CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCC
Confidence 9999999999999998 7777777 45 9999999999999999999999999999999999998888 566
Q ss_pred cccceeeeeecCCCCCCccceeec---c---eeEEEccCCceE-EEE-ecCCcceE--EEEec-ceee-eecccCCCeee
Q 003356 349 SLSSISSPIVKPNQDCKYEPLMSG---T---SMMQWDEYGYRL-YAI-EEGSSERV--LIFSF-GKCC-LNRGVSGMTYA 416 (827)
Q Consensus 349 ~~~~v~s~~~sp~~~~~~~~l~sg---~---~i~~W~~~~~~l-~~~-~~~~~~~v--~~~~~-~~~~-~s~~~d~~~~~ 416 (827)
....+.++.|+|++ ..+++| . .+.+|+..+.+. ... ...+...+ ..+++ ++.+ ++++.|+.+++
T Consensus 219 ~~~~~~~~~~~~~~----~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 219 EGTRPVHAVFVSEG----KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp CSSSCCEEEECSTT----EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred CCCcceEEEEcCCC----cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 43448899999998 788776 2 899999987543 222 22344455 44555 5666 46778999999
Q ss_pred eEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeE
Q 003356 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (827)
Q Consensus 417 w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w 485 (827)
|++..+...+. ....+ .|..+|++++|+|+|.++++ .++.+ +|++.+++.
T Consensus 295 ~d~~~~~~~~~----------------~l~~~-~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 295 FEITSEAPFLH----------------YLSMF-SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEECSSTTCEE----------------EEEEE-CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEecCCCcceE----------------eeccc-ccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 99876553110 01122 25689999999999999864 56678 999988754
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.88 E-value=2.3e-20 Score=204.34 Aligned_cols=228 Identities=10% Similarity=0.142 Sum_probs=162.9
Q ss_pred CceEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEE-EecCcEEEEEEEEec
Q 003356 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAV-VTSSLYLHIFKVQIT 99 (827)
Q Consensus 21 ~~~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav-~t~dg~l~l~~v~~~ 99 (827)
....++|||||++||+++++.++||+.. +...+... +++.+..++|+++++.+++ ++.++.|++||+..+
T Consensus 21 ~V~~v~fs~dg~~la~g~~~~~~iw~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~ 91 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLKSFEIYNVH-PVAHIMSQ--------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK 91 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSEEEEEEET-TEEEEEEE--------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred ceEEEEECCCCCEEEEEcCCEEEEEecC-Ccceeeee--------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence 3456899999999999999999999995 65443321 1234678999999998865 667789999997543
Q ss_pred CceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCccc
Q 003356 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (827)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i 179 (827)
.. +..+ . ....|.++..+++.++++. ++.+++|+..... ...
T Consensus 92 ~~-------------~~~~----~-------~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~-~~~------------ 133 (355)
T 3vu4_A 92 QD-------------VSRI----K-------VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPW-KRI------------ 133 (355)
T ss_dssp EE-------------EEEE----E-------CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTC-CBS------------
T ss_pred cE-------------EEEE----E-------CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCc-eee------------
Confidence 21 1111 1 1235677777777777664 6788886554320 100
Q ss_pred ceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEE--eeccCccccceeecc-------
Q 003356 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSC--SVSKKGLKLAEFIKI------- 250 (827)
Q Consensus 180 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~--~~~~~~~~~~~~~~~------- 250 (827)
.. +.. . ...+++++ +.+++ +..++++++|+....
T Consensus 134 ~~----------------------~~~-~------------~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~ 176 (355)
T 3vu4_A 134 TD----------------------DIR-F------------GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQD 176 (355)
T ss_dssp SC----------------------CEE-E------------EEEEEEET--TEEEEEESSCTTCEEEEECCC--------
T ss_pred EE----------------------ecc-C------------CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccc
Confidence 00 000 0 11233444 34444 466788888988753
Q ss_pred ------------ceecCCCCcEE-EEEcCCCCEEEEEecCCe-EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEEC
Q 003356 251 ------------DKELGSGDAVC-ASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT 316 (827)
Q Consensus 251 ------------~~~~~h~~~v~-va~sp~~~lla~g~~dg~-v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~s 316 (827)
..+.+|...+. ++|+|++++||+|+.||+ |++||+.+ ++.+..+... .|.++|.+++|+
T Consensus 177 ~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g------~h~~~v~~~~~s 249 (355)
T 3vu4_A 177 QGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRG------LDRADVVDMKWS 249 (355)
T ss_dssp ----------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT-CCEEEEEECT------TCCSCEEEEEEC
T ss_pred ccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcC------CCCCcEEEEEEC
Confidence 23478998887 999999999999999998 99999998 7778777620 188999999999
Q ss_pred CCCCEEEEEEcCCcEEEEeccCC
Q 003356 317 PDNSAFAVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 317 pDg~~Lasg~~Dg~v~vWs~~~~ 339 (827)
|||++||+|+.|++|++|++..+
T Consensus 250 ~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 250 TDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp TTSCEEEEEETTCEEEEEESSCC
T ss_pred CCCCEEEEEECCCEEEEEEccCC
Confidence 99999999999999999999765
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.4e-21 Score=219.23 Aligned_cols=259 Identities=11% Similarity=0.013 Sum_probs=182.2
Q ss_pred CCCcEE-EEEcCCCCEE-EEEecCCeEEEEEcC--CCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 256 SGDAVC-ASIAPEQQIL-AVGTRRGVVELYDLA--ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 256 h~~~v~-va~sp~~~ll-a~g~~dg~v~vw~~~--~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
|...+. ++|+|++++| |+|+.||+|++|++. + ++.++.+.... |...|.+++|+|||++|++|+.||.+
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRKRFC------FSKRPNAISIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEEEE------CSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-Cceeeeeeccc------CCCCceEEEEcCCCCEEEEEeCCCcE
Confidence 333566 9999999996 999999999999998 6 67777776311 78899999999999999999999999
Q ss_pred EEEeccCCeeEE----EeccccccceeeeeecCC---CCCCccceeecc---eeEEEccCCceEEEE-ecCCcceEEEEe
Q 003356 332 TVWSVSGCRLMS----TIRQISLSSISSPIVKPN---QDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERVLIFS 400 (827)
Q Consensus 332 ~vWs~~~~~l~~----tl~~~~~~~v~s~~~sp~---~~~~~~~l~sg~---~i~~W~~~~~~l~~~-~~~~~~~v~~~~ 400 (827)
++|++.++.... ++.+| ...|.+++|+|+ + ..+++|+ ++++|+..++++... ..+|...|..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~----~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 248 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQEPILGH-VSMLTDVHLIKDSDGH----QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSIC 248 (450)
T ss_dssp EEEETTSCCCSSCCCCCSEEC-SSCEEEEEEEECTTSC----EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEE
T ss_pred EEEecCCcccccccceeeecc-cCceEEEEEcCCCCCC----cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEE
Confidence 999998776543 56666 678999999999 7 7888776 899999998887766 568888887777
Q ss_pred c--ceeeeecccCCCeeeeEEEEcCCeEEEEecCC-CCcce--EEEe---eeceeeccCCCcEEEEEEcCCCCEEEEEe-
Q 003356 401 F--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED-TDELK--ILHL---NLPVSYISQNWPVQHVAASKDGMFLAVAG- 471 (827)
Q Consensus 401 ~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d-~~~~~--w~~~---~~p~~~~~~~~~I~~va~SpdG~~lavag- 471 (827)
| ++.+++++.|+++++|++..+.. +......+ ..... ++.. ..+.........|..++|+|+|+++++++
T Consensus 249 ~sd~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 327 (450)
T 2vdu_B 249 CGKDYLLLSAGGDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE 327 (450)
T ss_dssp ECSTTEEEEEESSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET
T ss_pred ECCCCEEEEEeCCCeEEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC
Confidence 6 78899999999999999755432 11111000 00000 0000 00000012345799999999999999999
Q ss_pred CCceE-EEEc--CC-CeEEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCC---CcEEEEEeeCC
Q 003356 472 LHGLI-LYDI--RQ-KKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSS---NTYELLFYPRY 529 (827)
Q Consensus 472 ~dg~i-iwd~--~t-~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~---~~~~lrly~~~ 529 (827)
.++.+ +|++ .+ ++++........ ..+.+++|.++.++++...... ....|++|...
T Consensus 328 ~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 328 ATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp TCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 89999 9999 44 333332111111 2377899998766665333211 23447777664
No 113
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.88 E-value=1.4e-20 Score=205.17 Aligned_cols=268 Identities=14% Similarity=0.153 Sum_probs=178.6
Q ss_pred ceEEEEEec---ceEEEEEc-cCeEEEeecCCceeEE-EEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEE
Q 003356 22 QQIIYFKVN---NGLLLIAS-PCHIELWSSSQHKVRL-GKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (827)
Q Consensus 22 ~~vv~fspd---g~lla~~~-~~~v~IW~~~~~~~~l-~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v 96 (827)
...++|+|+ |++||+++ ++.|+||+....+..+ ..+. .+.+.+.+++|+||+++|++++.||.|++|++
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ------MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE------ECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec------cccCCEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence 455899999 69999884 7899999995324333 2221 13477899999999999999999999999998
Q ss_pred EecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEee----cCCCeEEEEecCCcEEEEecCCccCcceeeccc
Q 003356 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV----SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (827)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~----~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~ 172 (827)
....... +..+...|.++. +++..+++++.||.+++|+.........
T Consensus 116 ~~~~~~~------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----- 166 (368)
T 3mmy_A 116 SSNQAIQ------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV----- 166 (368)
T ss_dssp TTTEEEE------------------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE-----
T ss_pred CCCCcee------------------------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE-----
Confidence 6332110 112334455543 4556799999999998855432211100
Q ss_pred CCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce
Q 003356 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK 252 (827)
Q Consensus 173 p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~ 252 (827)
+. ....+..+. ..+..++++..++.+.+|+......
T Consensus 167 -------------------------------~~-~~~~~~~~~------------~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (368)
T 3mmy_A 167 -------------------------------LQ-LPERCYCAD------------VIYPMAVVATAERGLIVYQLENQPS 202 (368)
T ss_dssp -------------------------------EE-CSSCEEEEE------------EETTEEEEEEGGGCEEEEECSSSCE
T ss_pred -------------------------------Ee-cCCCceEEE------------ecCCeeEEEeCCCcEEEEEeccccc
Confidence 00 011232322 2233455555666666676654321
Q ss_pred e-----cCCCCc-EEEEEcCCCCE----EEEEecCCeEEEEEcCCCC--cceEEEEeecC----CCCCCCCCCeEEEEEC
Q 003356 253 E-----LGSGDA-VCASIAPEQQI----LAVGTRRGVVELYDLAESA--SLIRTVSLYDW----GYSMDDTGPVSCIAWT 316 (827)
Q Consensus 253 ~-----~~h~~~-v~va~sp~~~l----la~g~~dg~v~vw~~~~~~--~~~~~l~~~~~----~~~~~h~~~V~~l~~s 316 (827)
. ..+... .++++.++... +++|+.||.|++|++.... .....+..... ....+|..+|++++|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (368)
T 3mmy_A 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH 282 (368)
T ss_dssp EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence 1 112222 23555444433 9999999999999998722 44556666110 0011122379999999
Q ss_pred CCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 003356 317 PDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 317 pDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
|||++||+|+.||.|++||+.+++++.++.+| ...+.+++|+|++ ..+++++
T Consensus 283 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g----~~l~~~s 334 (368)
T 3mmy_A 283 PVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQPISACCFNHNG----NIFAYAS 334 (368)
T ss_dssp TTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSCEEEEEECTTS----SCEEEEE
T ss_pred cCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CCCceEEEECCCC----CeEEEEe
Confidence 99999999999999999999999999999887 6789999999998 7787775
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.88 E-value=5.5e-21 Score=208.46 Aligned_cols=275 Identities=11% Similarity=0.088 Sum_probs=190.1
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeC---CcEEEEeeccCccccceeec-cce----ecCCCCcEE-EEEcCCCCEEEEEe
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSN---GQLMSCSVSKKGLKLAEFIK-IDK----ELGSGDAVC-ASIAPEQQILAVGT 275 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~d---G~~~~~~~~~~~~~~~~~~~-~~~----~~~h~~~v~-va~sp~~~lla~g~ 275 (827)
..+...|.+++ ++|+ |+.++++..++.+++|+... ... +.+|...+. ++|+|++++|++|+
T Consensus 36 ~~h~~~v~~~~----------~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 36 SSPDDSIGCLS----------FSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SCCSSCEEEEE----------ECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCCceEEEE----------EcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence 45667788877 5566 68888888888999999875 222 267888887 99999999999999
Q ss_pred cCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEE--CCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccce
Q 003356 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW--TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (827)
Q Consensus 276 ~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~--spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v 353 (827)
.||+|++||+.+ ++... +.. |.++|.+++| +|+|.+|++|+.||.|++||+.+++.+.++..+ ..+
T Consensus 106 ~dg~v~iwd~~~-~~~~~-~~~--------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~ 173 (368)
T 3mmy_A 106 CDKTAKMWDLSS-NQAIQ-IAQ--------HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP--ERC 173 (368)
T ss_dssp TTSEEEEEETTT-TEEEE-EEE--------CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS--SCE
T ss_pred CCCcEEEEEcCC-CCcee-ecc--------ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC--CCc
Confidence 999999999987 55444 445 8999999999 999999999999999999999999888888765 245
Q ss_pred eeeeecCCCCCCccceeec-ceeEEEccCCceEEEE-ec---CCcceEEEEec-c----eeeeecccCCCeeeeEEEEcC
Q 003356 354 SSPIVKPNQDCKYEPLMSG-TSMMQWDEYGYRLYAI-EE---GSSERVLIFSF-G----KCCLNRGVSGMTYARQVIYGE 423 (827)
Q Consensus 354 ~s~~~sp~~~~~~~~l~sg-~~i~~W~~~~~~l~~~-~~---~~~~~v~~~~~-~----~~~~s~~~d~~~~~w~~~~~~ 423 (827)
.++.+.+.. ..+.+. ..+.+|+......... .. .+......+.+ . ..+++++.|+.+++|++....
T Consensus 174 ~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 174 YCADVIYPM----AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp EEEEEETTE----EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred eEEEecCCe----eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence 555554432 222222 2888999876543322 21 23333444443 2 228999999999999975442
Q ss_pred C--eEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEE
Q 003356 424 D--RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSK 500 (827)
Q Consensus 424 ~--~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~ 500 (827)
. .+....+.. ..........|..+|.+++|+|||++||+|+.||.+ +||+.+++....-. .+...|.
T Consensus 250 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~ 319 (368)
T 3mmy_A 250 PAKDNFTFKCHR-------SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE---QLDQPIS 319 (368)
T ss_dssp HHHHSEEEECSE-------EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC---CCSSCEE
T ss_pred ccccceeeeeee-------cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec---CCCCCce
Confidence 1 100000000 000011122344489999999999999999999999 99999886432111 1223477
Q ss_pred EEEEeC--CEEEEEEEe
Q 003356 501 GLLWLG--KIIVVCNYI 515 (827)
Q Consensus 501 gl~W~~--~~li~~~~~ 515 (827)
+++|.. ..+++|+.+
T Consensus 320 ~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 320 ACCFNHNGNIFAYASSY 336 (368)
T ss_dssp EEEECTTSSCEEEEECC
T ss_pred EEEECCCCCeEEEEecc
Confidence 899974 467776443
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.1e-21 Score=234.26 Aligned_cols=252 Identities=16% Similarity=0.122 Sum_probs=194.1
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeec--cc---eecCCCCcEE-EEEcCC--CCEEEEEec
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK--ID---KELGSGDAVC-ASIAPE--QQILAVGTR 276 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~--~~---~~~~h~~~v~-va~sp~--~~lla~g~~ 276 (827)
..+...|.++. +++||+.+++++.++++++|+... .+ .+.+|.+.+. ++|+|+ +++|++|+.
T Consensus 6 ~gH~~~V~~l~----------~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~ 75 (753)
T 3jro_A 6 NAHNELIHDAV----------LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (753)
T ss_dssp --CCCCEEEEC----------CCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET
T ss_pred ccCcceeEEEE----------ECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC
Confidence 45666777766 667888888888888899998762 22 2368988887 999988 999999999
Q ss_pred CCeEEEEEcCCCCc--ceEEEEeecCCCCCCCCCCeEEEEECCC--CCEEEEEEcCCcEEEEeccCCe--eEEEeccccc
Q 003356 277 RGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISL 350 (827)
Q Consensus 277 dg~v~vw~~~~~~~--~~~~l~~~~~~~~~~h~~~V~~l~~spD--g~~Lasg~~Dg~v~vWs~~~~~--l~~tl~~~~~ 350 (827)
||+|++||+.+ ++ ....+.. |.++|++++|+|+ |..+++|+.||.|++||+.++. ....+.+| .
T Consensus 76 Dg~I~vwd~~~-~~~~~~~~~~~--------h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~-~ 145 (753)
T 3jro_A 76 DGKVLIWKEEN-GRWSQIAVHAV--------HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH-A 145 (753)
T ss_dssp TSCEEEEEEET-TEEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC-S
T ss_pred CCeEEEEECCC-CcccccccccC--------CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC-C
Confidence 99999999987 54 4455555 9999999999999 9999999999999999998763 33445555 6
Q ss_pred cceeeeeecCCCC---------CCccceeecc---eeEEEccCCc----eEEEEecCCcceEEEEec------ceeeeec
Q 003356 351 SSISSPIVKPNQD---------CKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERVLIFSF------GKCCLNR 408 (827)
Q Consensus 351 ~~v~s~~~sp~~~---------~~~~~l~sg~---~i~~W~~~~~----~l~~~~~~~~~~v~~~~~------~~~~~s~ 408 (827)
..+.+++|+|... .+...+++|+ .+.+|+..++ .+.....+|...|.++.+ ++.++++
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 7899999999410 0016677775 8999998765 566777888888866655 3679999
Q ss_pred ccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC-CeEE
Q 003356 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ-KKWR 486 (827)
Q Consensus 409 ~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t-~~w~ 486 (827)
+.|+++++|++..+.... .........|..+|.+++|+|+|+++++|+.||.+ +|++.+ ++|.
T Consensus 226 s~Dg~I~iwd~~~~~~~~---------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~ 290 (753)
T 3jro_A 226 SQDRTCIIWTQDNEQGPW---------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290 (753)
T ss_dssp ESSSCEEEEEESSSSSCC---------------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCB
T ss_pred ecCCEEEEecCCCCCCcc---------------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcc
Confidence 999999999987654310 00022334688899999999999999999999999 999984 5666
Q ss_pred eeCCc
Q 003356 487 VFGDI 491 (827)
Q Consensus 487 ~f~~~ 491 (827)
..+..
T Consensus 291 ~~~~~ 295 (753)
T 3jro_A 291 PAGEV 295 (753)
T ss_dssp CCCCB
T ss_pred ccccc
Confidence 55433
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=9.9e-21 Score=205.97 Aligned_cols=189 Identities=12% Similarity=-0.058 Sum_probs=145.3
Q ss_pred CCCCcEE-EEEcC--CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 255 GSGDAVC-ASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 255 ~h~~~v~-va~sp--~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
+|.+.+. ++|+| +++++++|+.||+|++||+.+ ++....... .|...|.+++|+|||.+||+|+.||.|
T Consensus 123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~-------~~~~~i~~~~~~pdg~~lasg~~dg~i 194 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED-DSQYIVHSA-------KSDVEYSSGVLHKDSLLLALYSPDGIL 194 (343)
T ss_dssp CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS-SCEEEEECC-------CSSCCCCEEEECTTSCEEEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEEec-------CCCCceEEEEECCCCCEEEEEcCCCEE
Confidence 4555565 99999 999999999999999999988 666554433 156689999999999999999999999
Q ss_pred EEEeccCCeeE-EEecc-ccccceeeeeecCCCCCCccceeecc--eeEEEccCCceEEEEecC---Ccce----EEEEe
Q 003356 332 TVWSVSGCRLM-STIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEG---SSER----VLIFS 400 (827)
Q Consensus 332 ~vWs~~~~~l~-~tl~~-~~~~~v~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~---~~~~----v~~~~ 400 (827)
++||+.++... .++.. | ...|++++|+|++ ..+++++ .+++|+....+....+.. +... .++|+
T Consensus 195 ~iwd~~~~~~~~~~~~~~h-~~~v~~l~fs~~g----~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 195 DVYNLSSPDQASSRFPVDE-EAKIKEVKFADNG----YWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID 269 (343)
T ss_dssp EEEESSCTTSCCEECCCCT-TSCEEEEEECTTS----SEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEEC
T ss_pred EEEECCCCCCCccEEeccC-CCCEEEEEEeCCC----CEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEEC
Confidence 99999988877 77877 5 6899999999998 7887776 899999988765433322 2122 36667
Q ss_pred c-ceeeeeccc-CCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcC---CCCEEEEEeCCce
Q 003356 401 F-GKCCLNRGV-SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK---DGMFLAVAGLHGL 475 (827)
Q Consensus 401 ~-~~~~~s~~~-d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Sp---dG~~lavag~dg~ 475 (827)
+ ++.+++++. |+.+++|++..... .|.. .++..++|++ +++.+++++.||.
T Consensus 270 ~~g~~l~~~s~~d~~i~v~~~~~~~~-------------~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~d~~ 325 (343)
T 3lrv_A 270 DSGKNMIAYSNESNSLTIYKFDKKTK-------------NWTK-----------DEESALCLQSDTADFTDMDVVCGDGG 325 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTC-------------SEEE-----------EEEEECCC----CCCCEEEEEEETTE
T ss_pred CCCCEEEEecCCCCcEEEEEEccccc-------------ceEe-----------cCceeEecCccccccceeEEEecCCc
Confidence 6 888898887 99999998754433 1211 4677888998 9999999999998
Q ss_pred E-EEEc
Q 003356 476 I-LYDI 480 (827)
Q Consensus 476 i-iwd~ 480 (827)
+ ++-.
T Consensus 326 ~~~~~~ 331 (343)
T 3lrv_A 326 IAAILK 331 (343)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 8 5543
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.85 E-value=4.2e-20 Score=207.74 Aligned_cols=244 Identities=11% Similarity=0.153 Sum_probs=184.7
Q ss_pred EEEEEeC-CcEEEEeeccCccccceeec----------cce---ecCCCCcEE-EEEcCCCC-EEEEEecCCeEEEEEcC
Q 003356 223 LFVLYSN-GQLMSCSVSKKGLKLAEFIK----------IDK---ELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLA 286 (827)
Q Consensus 223 ~~~~s~d-G~~~~~~~~~~~~~~~~~~~----------~~~---~~~h~~~v~-va~sp~~~-lla~g~~dg~v~vw~~~ 286 (827)
.+.++++ ++++++++.++.+++|+... ... +.+|...++ ++|+|+++ +|++|+.||+|++|++.
T Consensus 133 ~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 212 (430)
T 2xyi_A 133 RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN 212 (430)
T ss_dssp EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETT
T ss_pred EEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCC
Confidence 3556776 67888888888888898765 221 267888877 99999998 99999999999999998
Q ss_pred CCCcc------eEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEEEEeccCC---eeEEEeccccccceeee
Q 003356 287 ESASL------IRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISSP 356 (827)
Q Consensus 287 ~~~~~------~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~vWs~~~~---~l~~tl~~~~~~~v~s~ 356 (827)
..... ...+.. |.+.|.+++|+| ++.+||+++.||.|++||+..+ +....+..| ...++++
T Consensus 213 ~~~~~~~~~~~~~~~~~--------h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~i 283 (430)
T 2xyi_A 213 ATPKEHRVIDAKNIFTG--------HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-TAEVNCL 283 (430)
T ss_dssp SCCBGGGEEECSEEECC--------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC-SSCEEEE
T ss_pred CCCCCCceeccceeecC--------CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC-CCCeEEE
Confidence 72221 233444 999999999999 7889999999999999999876 566677666 6789999
Q ss_pred eecCCCCCCcc-ceeecc---eeEEEccCC-ceEEEEecCCcceEEEEec---ce-eeeecccCCCeeeeEEEEcCCeEE
Q 003356 357 IVKPNQDCKYE-PLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF---GK-CCLNRGVSGMTYARQVIYGEDRLL 427 (827)
Q Consensus 357 ~~sp~~~~~~~-~l~sg~---~i~~W~~~~-~~l~~~~~~~~~~v~~~~~---~~-~~~s~~~d~~~~~w~~~~~~~~~~ 427 (827)
+|+|++ . .+++|. .+.+|+... .+.+..+.+|...|..+.+ ++ .+++++.|+.+++|++........
T Consensus 284 ~~~p~~----~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 284 SFNPYS----EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EECSSC----TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EeCCCC----CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 999987 5 466665 899999987 5667777788888866665 43 588999999999999765321000
Q ss_pred EEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCC-EEEEEeCCceE-EEEcCCCeE
Q 003356 428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKW 485 (827)
Q Consensus 428 ~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~-~lavag~dg~i-iwd~~t~~w 485 (827)
.....+. ..++...+.+|..+|++++|+|+|+ ++++++.||.+ +|++..+.+
T Consensus 360 ~~~~~~~------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 360 TEDAEDG------PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413 (430)
T ss_dssp HHHHHHC------CTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred ccccccC------CcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence 0000000 0012334567889999999999999 99999999999 999977643
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.85 E-value=1.2e-18 Score=192.52 Aligned_cols=270 Identities=11% Similarity=0.078 Sum_probs=187.0
Q ss_pred ceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEE-EEEecCcEEEEEEEEecCceeecCCC
Q 003356 31 NGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQITEKSIQIGGK 108 (827)
Q Consensus 31 g~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~l-av~t~dg~l~l~~v~~~~~~~~~~~~ 108 (827)
+.+|+++ .+++|++|+.. .+..+..+. .++...+++|+|||+.+ ++++.++.|++||+..+..
T Consensus 2 ~~l~vs~~~d~~v~v~d~~-~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~------- 66 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVT-SNKVTATIP-------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV------- 66 (391)
T ss_dssp EEEEEEETTTTEEEEEETT-TTEEEEEEE-------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------
T ss_pred CEEEEEcCCCCEEEEEECC-CCeEEEEee-------cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-------
Confidence 3456666 57899999995 655544432 23456899999999987 4566899999999853321
Q ss_pred CCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEe-cCCcEEEEecCCccCcceeecccCCCCcccceecccCC
Q 003356 109 QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (827)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t-~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~ 187 (827)
+..+ . ... ...-.+++++++.++++. .++.|++|+.... .... .
T Consensus 67 ------~~~~----~----~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~--~~~~------------~------ 111 (391)
T 1l0q_A 67 ------IATV----P----AGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--TVAG------------T------ 111 (391)
T ss_dssp ------EEEE----E----CSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEE------------E------
T ss_pred ------EEEE----E----CCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC--eEEE------------E------
Confidence 1111 0 111 122235677788887665 4688888654321 1110 0
Q ss_pred CCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEE-EEeeccCccccceeecccee---cCCCCcEEEE
Q 003356 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE---LGSGDAVCAS 263 (827)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~-~~~~~~~~~~~~~~~~~~~~---~~h~~~v~va 263 (827)
......+.+ +.+++||+.+ +++..++.+.+|+...++.. ..+.....++
T Consensus 112 -----------------~~~~~~~~~----------~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 164 (391)
T 1l0q_A 112 -----------------VKTGKSPLG----------LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIA 164 (391)
T ss_dssp -----------------EECSSSEEE----------EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEE
T ss_pred -----------------EeCCCCcce----------EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEE
Confidence 001112334 4477888755 55666788888987655433 3445555599
Q ss_pred EcCCCCEE-EEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE---cCCcEEEEeccCC
Q 003356 264 IAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW---KSRGLTVWSVSGC 339 (827)
Q Consensus 264 ~sp~~~ll-a~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~---~Dg~v~vWs~~~~ 339 (827)
|+|+++.+ ++++.|++|++||+.+ ++....+. +...+.+++|+|||+.|++++ .|+.|++||+.++
T Consensus 165 ~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 165 VTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK---------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE---------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe---------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 99999877 6778899999999987 66665554 456789999999999999888 6899999999999
Q ss_pred eeEEEeccccccceeeeeecCCCCCCccce-eecc---eeEEEccCCceEEEEecCCc
Q 003356 340 RLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDEYGYRLYAIEEGSS 393 (827)
Q Consensus 340 ~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l-~sg~---~i~~W~~~~~~l~~~~~~~~ 393 (827)
+.+..+..+ ..+.+++|+|++ ..+ +++. .+.+|+..++++...+..+.
T Consensus 235 ~~~~~~~~~--~~~~~~~~s~dg----~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 235 KITARIPVG--PDPAGIAVTPDG----KKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp EEEEEEECC--SSEEEEEECTTS----SEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred eEEEEEecC--CCccEEEEccCC----CEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 988888775 347889999998 655 4543 89999999999887776544
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.3e-20 Score=200.19 Aligned_cols=230 Identities=9% Similarity=0.042 Sum_probs=171.3
Q ss_pred EEeCCcEEEEeeccCccccceeeccceec-CCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCC--------CcceEEE
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKEL-GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES--------ASLIRTV 295 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~--------~~~~~~l 295 (827)
+..|++++++++.|+++++|+...++... -....+. ++++|+ +++|+.|++|++|+.... .+.++..
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 34688899999999999999987664431 1123444 778887 999999999999987631 2223333
Q ss_pred EeecCCCCCCCCCCeEEEEECC--CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 003356 296 SLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (827)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~sp--Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (827)
.. +|.++|.+++|+| +|++|++|+.||+|++||+.++++......++...+.+++|+|++ ..+++|+
T Consensus 121 ~~-------~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg----~~lasg~ 189 (343)
T 3lrv_A 121 EV-------DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS----LLLALYS 189 (343)
T ss_dssp EC-------CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS----CEEEEEC
T ss_pred ec-------CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC----CEEEEEc
Confidence 31 3778999999999 999999999999999999999988777655545679999999998 8888876
Q ss_pred ---eeEEEccCCceEE-EEecC-CcceEEEEec---ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeec
Q 003356 374 ---SMMQWDEYGYRLY-AIEEG-SSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (827)
Q Consensus 374 ---~i~~W~~~~~~l~-~~~~~-~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p 445 (827)
.+++|+..+++.. ..+.. |...|..+.| ++.+++++ ++++++|++...... ...
T Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~-----------------~~~ 251 (343)
T 3lrv_A 190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT-----------------LAY 251 (343)
T ss_dssp TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC-----------------BSS
T ss_pred CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc-----------------eee
Confidence 8999999988876 66776 8889966655 77888888 559999997655430 001
Q ss_pred eeeccCCCcEE--EEEEcCCCCEEEEEeC-CceE-EEEcCCC--eEEe
Q 003356 446 VSYISQNWPVQ--HVAASKDGMFLAVAGL-HGLI-LYDIRQK--KWRV 487 (827)
Q Consensus 446 ~~~~~~~~~I~--~va~SpdG~~lavag~-dg~i-iwd~~t~--~w~~ 487 (827)
..+..|..++. +++|+|+|+++++++. |+.+ +|++.++ .|..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 11222444444 6999999999999998 9999 9998543 4654
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.2e-20 Score=223.83 Aligned_cols=242 Identities=12% Similarity=0.101 Sum_probs=185.5
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCC-CcceEEEEeecCCCCCCCCCCeEEEEECCC--CCEEEEEEcCC
Q 003356 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR 329 (827)
Q Consensus 254 ~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spD--g~~Lasg~~Dg 329 (827)
.+|.+.+. ++|+|++++||+|+.||+|++|++... ......+.+ |.++|++++|+|+ |++|++|+.||
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~--------h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECC--------CSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccC--------CcCceEEEEecCCCCCCEEEEEeCCC
Confidence 57888887 999999999999999999999999741 345566666 9999999999998 99999999999
Q ss_pred cEEEEeccCCe--eEEEeccccccceeeeeecCC--CCCCccceeecc---eeEEEccCCce--EEEEecCCcceEEEEe
Q 003356 330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGYR--LYAIEEGSSERVLIFS 400 (827)
Q Consensus 330 ~v~vWs~~~~~--l~~tl~~~~~~~v~s~~~sp~--~~~~~~~l~sg~---~i~~W~~~~~~--l~~~~~~~~~~v~~~~ 400 (827)
.|++||+.++. ....+.+| ...|.+++|+|+ + ..+++|+ .+.+|+..+.. ......+|...|..+.
T Consensus 78 ~I~vwd~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~----~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~ 152 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (753)
T ss_dssp CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred eEEEEECCCCcccccccccCC-CCCeEEEEECCCCCC----CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence 99999999887 56667666 678999999998 6 7777776 89999987762 2334567777785554
Q ss_pred c----------------ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCC-
Q 003356 401 F----------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD- 463 (827)
Q Consensus 401 ~----------------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Spd- 463 (827)
+ ++.+++++.|+++++|++..+... ..+...+.+|..+|.+++|+|+
T Consensus 153 ~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~----------------~~~~~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT----------------YVLESTLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp ECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE----------------EEEEEEECCCSSCEEEEEECCCC
T ss_pred ecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc----------------ceeeeeecCCCCcEEEEEeccCC
Confidence 4 467899999999999998766542 1123456789999999999999
Q ss_pred --CCEEEEEeCCceE-EEEcCCCeE--EeeCCccceEEEEEEEEEEeC--CEEEEEEEeeCCCcEEEEEeeCC
Q 003356 464 --GMFLAVAGLHGLI-LYDIRQKKW--RVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 464 --G~~lavag~dg~i-iwd~~t~~w--~~f~~~~~e~~~~v~gl~W~~--~~li~~~~~~~~~~~~lrly~~~ 529 (827)
|+++++|+.||.+ +||+.++.- .............|.+++|.. ..+++++ .+..+++|...
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-----~Dg~I~vwd~~ 284 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG-----GDNKVTLWKEN 284 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC-----SSSCEECCBCC
T ss_pred CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc-----CCCEEEEEecC
Confidence 9999999999999 999988631 111011111222466788964 4566552 23568899875
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.83 E-value=1.6e-18 Score=194.82 Aligned_cols=301 Identities=14% Similarity=0.130 Sum_probs=199.7
Q ss_pred cccEEEEcCCc----------cEEEEEec----CcEEEEEEEEecCceeecCC--CCCC--Cce---eeeEeeEeecccc
Q 003356 69 ENLQAVWSPDT----------KLIAVVTS----SLYLHIFKVQITEKSIQIGG--KQPS--GLF---FIKISLVLNEQLP 127 (827)
Q Consensus 69 ~~~~v~wSPDg----------~~lav~t~----dg~l~l~~v~~~~~~~~~~~--~~~~--~~~---~~~~~l~~~~~~~ 127 (827)
+..++.|.||. .++++||. .++|.++++........... .+.+ +.. ...-.+... .
T Consensus 47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~ 123 (430)
T 2xyi_A 47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIE---I 123 (430)
T ss_dssp CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEE---E
T ss_pred CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEE---E
Confidence 44688899987 46888884 46899998763211000000 0000 000 000001101 1
Q ss_pred cccccceEEEe--ecC-CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceecccc
Q 003356 128 FAEKGLSVSNI--VSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK 204 (827)
Q Consensus 128 ~~~~~~~v~~~--~~d-~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~ 204 (827)
...+...|.++ .++ +..+++++.+|.|++|+......... . ... ......+
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------~-----------~~~--------~~~~~~~ 177 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------P-----------SGE--------CQPDLRL 177 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------T-----------TCC--------CCCSEEE
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------c-----------ccc--------CCCcEEe
Confidence 12334445454 444 45788888999999977653211100 0 000 0000111
Q ss_pred CCCcccEEEEEEcCCcceEEEEEeCCc-EEEEeeccCccccceeecc----------ceecCCCCcEE-EEEcC-CCCEE
Q 003356 205 FPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKI----------DKELGSGDAVC-ASIAP-EQQIL 271 (827)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~~~~~~~~~~~~~----------~~~~~h~~~v~-va~sp-~~~ll 271 (827)
..+...+.++. ++++|+ .+++++.++++++|+.... ..+.+|...+. ++|+| ++.++
T Consensus 178 ~~h~~~v~~l~----------~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l 247 (430)
T 2xyi_A 178 RGHQKEGYGLS----------WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF 247 (430)
T ss_dssp ECCSSCCCCEE----------ECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE
T ss_pred cCCCCCeEEEE----------eCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE
Confidence 22333444444 566666 7777777888888887652 12357888887 99999 78899
Q ss_pred EEEecCCeEEEEEcCCCC--cceEEEEeecCCCCCCCCCCeEEEEECCCCC-EEEEEEcCCcEEEEeccC-CeeEEEecc
Q 003356 272 AVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSG-CRLMSTIRQ 347 (827)
Q Consensus 272 a~g~~dg~v~vw~~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~-~Lasg~~Dg~v~vWs~~~-~~l~~tl~~ 347 (827)
|+|+.||+|++||+.+.. ..+..+.. |.+.|++++|+|++. +||+|+.||.|++||+.. +..+.++..
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~ 319 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPSHTVDA--------HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 319 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCSEEEEC--------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC
T ss_pred EEEeCCCeEEEEECCCCCCCcceeEeec--------CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec
Confidence 999999999999998732 45666666 999999999999987 799999999999999986 566778877
Q ss_pred ccccceeeeeecCCCCCCcc-ceeecc---eeEEEccCC--------------ceEEEEecCCcceEEEEec---ce-ee
Q 003356 348 ISLSSISSPIVKPNQDCKYE-PLMSGT---SMMQWDEYG--------------YRLYAIEEGSSERVLIFSF---GK-CC 405 (827)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~-~l~sg~---~i~~W~~~~--------------~~l~~~~~~~~~~v~~~~~---~~-~~ 405 (827)
| ...|.+++|+|++ . .+++++ .+.+|+... .+++....+|...|..+.+ ++ .+
T Consensus 320 h-~~~v~~i~~sp~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l 394 (430)
T 2xyi_A 320 H-KDEIFQVQWSPHN----ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 394 (430)
T ss_dssp C-SSCEEEEEECSSC----TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEE
T ss_pred C-CCCEEEEEECCCC----CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEE
Confidence 7 6789999999987 4 366664 899999876 3677788888888876666 55 78
Q ss_pred eecccCCCeeeeEEEE
Q 003356 406 LNRGVSGMTYARQVIY 421 (827)
Q Consensus 406 ~s~~~d~~~~~w~~~~ 421 (827)
++++.|+.+++|++..
T Consensus 395 ~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 395 CSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEETTSEEEEEEECH
T ss_pred EEEECCCCEEEeEccc
Confidence 9999999999999753
No 122
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.83 E-value=2.6e-18 Score=214.91 Aligned_cols=461 Identities=11% Similarity=0.018 Sum_probs=263.8
Q ss_pred ceEEEEEecceEEEEEcc-------CeEEEeecCCceeEEEEEEeChHhhhhcCcc-------cEEEEcCCccEEEEEec
Q 003356 22 QQIIYFKVNNGLLLIASP-------CHIELWSSSQHKVRLGKYKRDSESVQREGEN-------LQAVWSPDTKLIAVVTS 87 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~~-------~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~-------~~v~wSPDg~~lav~t~ 87 (827)
...++|||||+.||.++. ..|.+|+.. .+. ...+.. +.+.+ ..++|||||+.+++++.
T Consensus 55 v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~-~g~-~~~lt~------~~~~~~~~~~~~~~~~~SpDg~ll~~~~~ 126 (1045)
T 1k32_A 55 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE-NGE-IKRITY------FSGKSTGRRMFTDVAGFDPDGNLIISTDA 126 (1045)
T ss_dssp EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT-TTE-EEECCC------CCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred ccCeEECCCCCEEEEEEeeccCCCCCeEEEEECC-CCC-eEEccc------CCCcccccccccccccCCCCCEEEEEECC
Confidence 455789999999998742 279999984 432 222111 11223 68999999997676664
Q ss_pred C----cE--EEEEEEEecCceeecCCCC---------------------------CCCceeeeEeeEeecccccccccce
Q 003356 88 S----LY--LHIFKVQITEKSIQIGGKQ---------------------------PSGLFFIKISLVLNEQLPFAEKGLS 134 (827)
Q Consensus 88 d----g~--l~l~~v~~~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~~~~~~~ 134 (827)
+ +. |..|++..+.......... .....+|..... .....+.++...
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l~~~~~~ 205 (1045)
T 1k32_A 127 MQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTH 205 (1045)
T ss_dssp TSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSC
T ss_pred cCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCC-CCeEECcCCCCc
Confidence 4 43 5455543322111111100 001112211000 011112334445
Q ss_pred EEEeecCCCeEE-EEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCC-ccccccCCceeccccCCCcccEE
Q 003356 135 VSNIVSDNKHML-LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG-LASVDTSGAFVSDHKFPISSAII 212 (827)
Q Consensus 135 v~~~~~d~~~ll-v~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~i~ 212 (827)
+.++...++.++ ++..+|...+|.++........+ ..+. ......++++++ +++.. .+ ....+.. ....+.
T Consensus 206 v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l--~~~~--~~~~~~~SpDG~~la~~~-~~-~i~~~d~-~~~~l~ 278 (1045)
T 1k32_A 206 VSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKH--TSFT--DYYPRHLNTDGRRILFSK-GG-SIYIFNP-DTEKIE 278 (1045)
T ss_dssp CEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEEC--CCCC--SSCEEEEEESSSCEEEEE-TT-EEEEECT-TTCCEE
T ss_pred ccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEe--cCCC--CcceeeEcCCCCEEEEEe-CC-EEEEecC-CceEee
Confidence 555555555554 44567777777665432222211 1111 122334555554 33322 11 1111111 122222
Q ss_pred EEEEc-----------CCcceEEEEE-eCCcEEEEeeccCccccceeeccce--ecCCCC-cEE-EEEcCCCCEEEEEec
Q 003356 213 WLELC-----------LPMRLLFVLY-SNGQLMSCSVSKKGLKLAEFIKIDK--ELGSGD-AVC-ASIAPEQQILAVGTR 276 (827)
Q Consensus 213 ~i~~~-----------~~~~~~~~~s-~dG~~~~~~~~~~~~~~~~~~~~~~--~~~h~~-~v~-va~sp~~~lla~g~~ 276 (827)
.+... ......+.++ |||+.++++. ++.+.+|+....+. +..|.. .+. ++|+ ||+.|++++.
T Consensus 279 ~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~ 356 (1045)
T 1k32_A 279 KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR 356 (1045)
T ss_dssp ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET
T ss_pred eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC
Confidence 22110 0123457789 9999887766 56677777654432 245555 555 9999 9999999999
Q ss_pred CCeEE-EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceee
Q 003356 277 RGVVE-LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISS 355 (827)
Q Consensus 277 dg~v~-vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s 355 (827)
++.+. +|++.. +.. ..+.. |...+.+++|||||+.||+++.|+.|++||+.++++...+.+| ...+.+
T Consensus 357 ~~~l~~~~d~~~-~~~-~~l~~--------~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~-~~~v~~ 425 (1045)
T 1k32_A 357 EGDFLGIYDYRT-GKA-EKFEE--------NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITD 425 (1045)
T ss_dssp TEEEEEEEETTT-CCE-EECCC--------CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCC
T ss_pred CCceEEEEECCC-CCc-eEecC--------CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC-CCCccc
Confidence 88888 889876 332 23323 7889999999999999999999999999999998877766555 567889
Q ss_pred eeecCCCCCCccceeec-------------ceeEEEccCCceEEEEecCCcceE--EEEec-ceeeeecccCCCeeeeEE
Q 003356 356 PIVKPNQDCKYEPLMSG-------------TSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 356 ~~~sp~~~~~~~~l~sg-------------~~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~ 419 (827)
++|+|++ ..++.+ ..+.+|+..+++ ...+..+...+ ..|++ ++.++.++.++....|+.
T Consensus 426 ~~~SpDG----~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 426 FTISDNS----RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp EEECTTS----CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred eEECCCC----CeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 9999999 655433 268899999888 44455555555 44555 888888877777666653
Q ss_pred EEc------CCeEEEEecC--CCCc------------ceEE--Ee-eeceeeccCCCcEEEEEEcCCCCEEEE-------
Q 003356 420 IYG------EDRLLVVQSE--DTDE------------LKIL--HL-NLPVSYISQNWPVQHVAASKDGMFLAV------- 469 (827)
Q Consensus 420 ~~~------~~~~~~~~~~--d~~~------------~~w~--~~-~~p~~~~~~~~~I~~va~SpdG~~lav------- 469 (827)
... ..+++...-. .... ..|. .. .....+..|...+..++++|||+++++
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~ 580 (1045)
T 1k32_A 501 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF 580 (1045)
T ss_dssp SSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSH
T ss_pred hccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcc
Confidence 211 1122221110 0000 0010 00 011123346677999999999998886
Q ss_pred ------EeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeC--CEEEEEEEeeCCCcEEEEEeeCC
Q 003356 470 ------AGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 470 ------ag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~--~~li~~~~~~~~~~~~lrly~~~ 529 (827)
.+..+.+ +||+.+++.+.+. -.+..+.+.. ..++++ .+ + .+++|+..
T Consensus 581 ~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~v~~~~~S~DG~~l~~~--~~-~---~i~~~d~~ 636 (1045)
T 1k32_A 581 AAYYQGAPEKGVLLKYDVKTRKVTEVK-------NNLTDLRLSADRKTVMVR--KD-D---GKIYTFPL 636 (1045)
T ss_dssp HHHHHCCCCCEEEEEEETTTCCEEEEE-------EEEEEEEECTTSCEEEEE--ET-T---SCEEEEES
T ss_pred cccccccCCCceEEEEECCCCcEEEee-------cCcceEEECCCCCEEEEE--cC-C---cEEEEeCc
Confidence 1234567 8999998876553 1245667764 466655 21 1 46666664
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.83 E-value=2.7e-19 Score=198.66 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=154.5
Q ss_pred eEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhh-hcCcccEEEEcC--------CccEEEEEecCcEEE
Q 003356 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQ-REGENLQAVWSP--------DTKLIAVVTSSLYLH 92 (827)
Q Consensus 23 ~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~-~~G~~~~v~wSP--------Dg~~lav~t~dg~l~ 92 (827)
...+++++++++|++ .|++|+||+.+ .+........ ..+. +.+.+.+++|+| ||++||+++.|++|+
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~-~~~~~~~~~~--~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITK-NETIITQHVL--GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEE-TTEEEEEEEE--CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECC-CCccceeeee--cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 445678889999998 47899999985 4433322211 1222 458899999998 999999999999999
Q ss_pred EEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEE--EeecCC-CeEEEEecCCcEEEEecCCccCcceee
Q 003356 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFEL 169 (827)
Q Consensus 93 l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~d~-~~llv~t~dg~i~~~~w~~~~~~~~~l 169 (827)
+||+..+...... ..+...+. ++.+++ ..+++++.||.|++|++........ .
T Consensus 170 ~Wd~~~~~~~~~~-----------------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~-~ 225 (393)
T 4gq1_A 170 IWRLTDEGPILAG-----------------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE-N 225 (393)
T ss_dssp EEEEETTEEEEEE-----------------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred EEECCCCceeeee-----------------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccc-c
Confidence 9999744321111 11122333 445665 4688899999999976653321111 0
Q ss_pred cccCCCCc--ccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCcccccee
Q 003356 170 VHSSNDSS--VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF 247 (827)
Q Consensus 170 ~~~p~~~~--~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~ 247 (827)
...+.... +......... .......+...+. ...+..+||+.++++..++++++|+.
T Consensus 226 ~~~~~~~~~~~~s~~~~~~~------------~~~~~~~~~~~v~---------~v~~~~~dg~~l~s~s~d~~i~vwd~ 284 (393)
T 4gq1_A 226 SQTELVKNPWLLTLNTLPLV------------NTCHSSGIASSLA---------NVRWIGSDGSGILAMCKSGAWLRWNL 284 (393)
T ss_dssp -----CSCCCSEEEESGGGC------------------CCSSSCS---------EEEEETTTTCEEEEECTTSEEEEEEC
T ss_pred cccCCcccceEEecccccce------------eeeecccccccce---------eeeeecCCCCEEEEEeCCCCEEEEEC
Confidence 00000000 0000000000 0000011122222 22334489999999999999999987
Q ss_pred ecccee---cCC-------------------CCcEEEEEcC--CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCC
Q 003356 248 IKIDKE---LGS-------------------GDAVCASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (827)
Q Consensus 248 ~~~~~~---~~h-------------------~~~v~va~sp--~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~ 303 (827)
...+.. ..| ...+...++| ++.++++|+.||+|++||+.+ +.....+..
T Consensus 285 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~------ 357 (393)
T 4gq1_A 285 FANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQ------ 357 (393)
T ss_dssp -------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEE------
T ss_pred ccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecC------
Confidence 543221 111 1122233444 455788899999999999988 677777776
Q ss_pred CCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 304 ~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
|..+|.+++|||||++||++++ +++.+|.+.+
T Consensus 358 --~~~~V~svafspdG~~LA~as~-~Gv~lvrL~g 389 (393)
T 4gq1_A 358 --LGMPIVDFCWHQDGSHLAIATE-GSVLLTRLMG 389 (393)
T ss_dssp --CSSCEEEEEECTTSSEEEEEES-SEEEEEEEGG
T ss_pred --CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEEeC
Confidence 8899999999999999999987 5688887754
No 124
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=3.9e-18 Score=213.32 Aligned_cols=218 Identities=12% Similarity=-0.006 Sum_probs=161.0
Q ss_pred EEEEEeCCcEEEEeeccCccccceeecccee---cC-----------CCCcE-EEEEc-CCCCEEEEEecCCeEEEEEcC
Q 003356 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LG-----------SGDAV-CASIA-PEQQILAVGTRRGVVELYDLA 286 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~-----------h~~~v-~va~s-p~~~lla~g~~dg~v~vw~~~ 286 (827)
...++|||+.++.+ .++.+.+|+... ..+ .+ |...+ .++|| |||+.||+++ ++.|.+|++.
T Consensus 249 ~~~~SpDG~~la~~-~~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 249 PRHLNTDGRRILFS-KGGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred eeeEcCCCCEEEEE-eCCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence 45789999988776 466777887622 111 11 22234 49999 9999999988 8899999987
Q ss_pred CCCcceEEEEeecCCCCCCCCC-CeEEEEECCCCCEEEEEEcCCcEE-EEeccCCeeEEEeccccccceeeeeecCCCCC
Q 003356 287 ESASLIRTVSLYDWGYSMDDTG-PVSCIAWTPDNSAFAVGWKSRGLT-VWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 364 (827)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~-~V~~l~~spDg~~Lasg~~Dg~v~-vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~ 364 (827)
. +. ...+.. |.+ .+.+++|+ ||+.|+.++.++.+. +|++.++... .+.++ ...+.+++|+|++
T Consensus 326 ~-~~-~~~~~~--------~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~-~~~~~~~~~SpDG-- 390 (1045)
T 1k32_A 326 G-TY-VLKVPE--------PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN-LGNVFAMGVDRNG-- 390 (1045)
T ss_dssp S-SB-EEECSC--------CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC-CCSEEEEEECTTS--
T ss_pred C-Cc-eEEccC--------CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC-ccceeeeEECCCC--
Confidence 6 43 233333 677 89999999 999999999988888 8999887644 34444 5678999999999
Q ss_pred Cccceeecc---eeEEEccCCceEEEEecCCcceE--EEEec-ceeeeecccCC----------CeeeeEEEEcCCeEEE
Q 003356 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSG----------MTYARQVIYGEDRLLV 428 (827)
Q Consensus 365 ~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~----------~~~~w~~~~~~~~~~~ 428 (827)
..++.+. .+.+|+..++++.....+|...+ .+|++ ++.+++++.++ .+++|++..+.
T Consensus 391 --~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~----- 463 (1045)
T 1k32_A 391 --KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----- 463 (1045)
T ss_dssp --SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-----
T ss_pred --CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-----
Confidence 7776654 78999999998887776776665 56666 78787766543 66666643211
Q ss_pred EecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcC
Q 003356 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (827)
Q Consensus 429 ~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~ 481 (827)
+..+..|...+..++|||||++|++++.++.. .|+..
T Consensus 464 ----------------~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 464 ----------------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp ----------------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ----------------EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 23455677788999999999999999988877 77654
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.82 E-value=3.3e-18 Score=191.74 Aligned_cols=218 Identities=11% Similarity=0.103 Sum_probs=160.6
Q ss_pred EEeCCcEEEEeeccCccccceeecccee---cCCCCcEE-EEEcCCCCEEE-EEecCCeEEEEEcCCCCcceEEEEeecC
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVSLYDW 300 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~-va~sp~~~lla-~g~~dg~v~vw~~~~~~~~~~~l~~~~~ 300 (827)
++++|++++++..++.+++|+....+.. ..|...+. ++|+|+++.++ +++.|++|++||+.+ ++.+..+..
T Consensus 177 ~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~--- 252 (433)
T 3bws_A 177 IPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-KLEIRKTDK--- 252 (433)
T ss_dssp EGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-TEEEEECCC---
T ss_pred EcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-CcEEEEecC---
Confidence 5678888888888899999997665433 46676666 99999999885 555899999999987 665555443
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEE--------cCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccc-eee
Q 003356 301 GYSMDDTGPVSCIAWTPDNSAFAVGW--------KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP-LMS 371 (827)
Q Consensus 301 ~~~~~h~~~V~~l~~spDg~~Lasg~--------~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~-l~s 371 (827)
.+.+.+++|+|||+.|++++ .|+.|++||+.+++....+.. ...+.+++|+|++ .. +++
T Consensus 253 ------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g----~~l~~~ 320 (433)
T 3bws_A 253 ------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP--PGNKRHIVSGNTE----NKIYVS 320 (433)
T ss_dssp ------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE--EECEEEEEECSST----TEEEEE
T ss_pred ------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC--CCCcceEEECCCC----CEEEEE
Confidence 45599999999999999888 488999999999887776633 2367889999987 53 344
Q ss_pred cc---eeEEEccCCceEEEEecCCcceE--EEEec-ceeeeeccc---------------CCCeeeeEEEEcCCeEEEEe
Q 003356 372 GT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGV---------------SGMTYARQVIYGEDRLLVVQ 430 (827)
Q Consensus 372 g~---~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~---------------d~~~~~w~~~~~~~~~~~~~ 430 (827)
+. .+.+|+..++++..... +...+ .++++ ++.+++++. |+.+++|++..+..
T Consensus 321 ~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~------ 393 (433)
T 3bws_A 321 DMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV------ 393 (433)
T ss_dssp ETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE------
T ss_pred ecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE------
Confidence 33 89999999888877664 33344 44554 555555544 45777777432211
Q ss_pred cCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeC-CceE-EEEcC
Q 003356 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIR 481 (827)
Q Consensus 431 ~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~-dg~i-iwd~~ 481 (827)
...+.. ...+.+++|+|||++|++++. |+.+ +|++.
T Consensus 394 --------------~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 394 --------------KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp --------------EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred --------------EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 112222 346899999999999999875 9999 99985
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.82 E-value=2.1e-18 Score=199.31 Aligned_cols=338 Identities=9% Similarity=0.058 Sum_probs=205.5
Q ss_pred ceEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEE--Ee
Q 003356 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV--QI 98 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v--~~ 98 (827)
.++-+|+|+++++++. .+++|.+||.. .+..+..+.- .+. ...++|||||++|++++.++.|.+||+ .+
T Consensus 140 ~~~~~~~p~~~~~vs~~~d~~V~v~D~~-t~~~~~~i~~------g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t 211 (543)
T 1nir_A 140 KQLNDLDLPNLFSVTLRDAGQIALVDGD-SKKIVKVIDT------GYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE 211 (543)
T ss_dssp SCCSCCCGGGEEEEEEGGGTEEEEEETT-TCCEEEEEEC------STT-EEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred ccccccCCCCEEEEEEcCCCeEEEEECC-CceEEEEEec------Ccc-cceEEECCCCCEEEEECCCCeEEEEECcCCC
Confidence 3444599999998888 56899999995 6666655431 112 457899999999999999999999998 32
Q ss_pred cCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeec----CCCeEEEEec-CCcEEEEecCCccCcceeecccC
Q 003356 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS----DNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSS 173 (827)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~----d~~~llv~t~-dg~i~~~~w~~~~~~~~~l~~~p 173 (827)
.. .+..+ .. +....-.++++ |++.+++++. ++.+.+|+ ........
T Consensus 212 ~~-------------~~~~i--------~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D--~~t~~~~~----- 262 (543)
T 1nir_A 212 PT-------------KVAEI--------KI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD--GETLEPKQ----- 262 (543)
T ss_dssp CE-------------EEEEE--------EC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE--TTTCCEEE-----
T ss_pred Cc-------------EEEEE--------ec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe--ccccccce-----
Confidence 11 11111 11 11223346778 8999999884 78888754 33322211
Q ss_pred CCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEE-EeeccCccccceeeccce
Q 003356 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMS-CSVSKKGLKLAEFIKIDK 252 (827)
Q Consensus 174 ~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~-~~~~~~~~~~~~~~~~~~ 252 (827)
.++..... ...........+.. ++++++|+.++ +...++++.+|+..+.+.
T Consensus 263 -------~i~~~g~~-----------~~~~~~~~~~~v~~----------i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~ 314 (543)
T 1nir_A 263 -------IVSTRGMT-----------VDTQTYHPEPRVAA----------IIASHEHPEFIVNVKETGKVLLVNYKDIDN 314 (543)
T ss_dssp -------EEECCEEC-----------SSSCCEESCCCEEE----------EEECSSSSEEEEEETTTTEEEEEECTTSSS
T ss_pred -------eecccCcc-----------cCccccccCCceEE----------EEECCCCCEEEEEECCCCeEEEEEecCCCc
Confidence 10000000 00000001112333 34566554433 333456666676544321
Q ss_pred e----cCCCCcEE-EEEcCCCCEEEEE-ecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC-CCEEEEE
Q 003356 253 E----LGSGDAVC-ASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVG 325 (827)
Q Consensus 253 ~----~~h~~~v~-va~sp~~~lla~g-~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD-g~~Lasg 325 (827)
. ..+..... ++|+|+|+++.++ ..+++|.+||..+ ++++.++..... .|.+....+ ++|| |.+++++
T Consensus 315 l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~----ph~g~g~~~-~~p~~g~~~~s~ 388 (543)
T 1nir_A 315 LTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKT----PHPGRGANF-VHPKYGPVWSTS 388 (543)
T ss_dssp CEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSS----BCCTTCEEE-EETTTEEEEEEE
T ss_pred ceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCC----CCCCCCccc-CCCCCccEEEec
Confidence 1 22344455 8999999976655 4689999999998 777777764221 266544444 4677 7777777
Q ss_pred E-cCCcEEEEeccC-------CeeEEEeccccccceeeeeecCCCCCCccceeecc----------eeEEEccCCceEE-
Q 003356 326 W-KSRGLTVWSVSG-------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----------SMMQWDEYGYRLY- 386 (827)
Q Consensus 326 ~-~Dg~v~vWs~~~-------~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----------~i~~W~~~~~~l~- 386 (827)
. .|++|+||++.+ .+++.++..++ ..+..++++|++ ..+..+. ++.+|+..+++..
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g-~~~~~v~~~pdg----~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~ 463 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQG-GGSLFIKTHPKS----SHLYVDTTFNPDARISQSVAVFDLKNLDAKY 463 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCEECCTTC----CEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEEcCC-CCceEEEcCCCC----CcEEEecCCCCCcccCceEEEEECCCCCCCe
Confidence 5 679999999987 78889998873 456778888887 4433221 3444444332210
Q ss_pred EEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCE
Q 003356 387 AIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMF 466 (827)
Q Consensus 387 ~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~ 466 (827)
..+ . .+. -..+..+...+..++|+|||++
T Consensus 464 ~~~----------~------v~~-----------------------------------~~~~~~~~~~~~~~~~~~~g~~ 492 (543)
T 1nir_A 464 QVL----------P------IAE-----------------------------------WADLGEGAKRVVQPEYNKRGDE 492 (543)
T ss_dssp EEE----------C------HHH-----------------------------------HHCCCSSCCEEEEEEECSSSSE
T ss_pred EEe----------e------chh-----------------------------------hcccCCCCCceEeccCCCCCCE
Confidence 000 0 000 0001234567899999999999
Q ss_pred EEEEe-----CCceE-EEEcCCCeEE
Q 003356 467 LAVAG-----LHGLI-LYDIRQKKWR 486 (827)
Q Consensus 467 lavag-----~dg~i-iwd~~t~~w~ 486 (827)
++++. .++.| +||..|++.+
T Consensus 493 ~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 493 VWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp EEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred EEEEeecCCCCCCeEEEEECCCceEE
Confidence 99873 47888 9999999754
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.81 E-value=4.8e-18 Score=190.48 Aligned_cols=273 Identities=12% Similarity=0.046 Sum_probs=182.7
Q ss_pred EEEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCce
Q 003356 24 IIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (827)
Q Consensus 24 vv~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~ 102 (827)
.++|+|+++++++.+ +++|.+|+.. .+..+.. ........+.+.+.+++|+|||+.+++++.+|.|++|++.....
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~-~g~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~- 203 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDIN-SGQTVRL-SPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY- 203 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETT-TCCEEEE-CCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE-
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECC-CCeEeee-cCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE-
Confidence 478999888888775 5679999995 5544422 12212223457788999999999999999999999999853321
Q ss_pred eecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEe-cCCcEEEEecCCccCcceeecccCCCCcccce
Q 003356 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (827)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t-~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~ 181 (827)
+..+ . .......-.++.++++.++++. .++.+++|+... ..... .
T Consensus 204 ------------~~~~----~----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~--~~~~~------------~ 249 (433)
T 3bws_A 204 ------------KATV----D----LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT--KLEIR------------K 249 (433)
T ss_dssp ------------EEEE----E----CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT--TEEEE------------E
T ss_pred ------------EEEE----c----CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC--CcEEE------------E
Confidence 1111 0 0111122235667788886665 688888855432 11110 0
Q ss_pred ecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEee--------ccCccccceeecccee
Q 003356 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV--------SKKGLKLAEFIKIDKE 253 (827)
Q Consensus 182 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~--------~~~~~~~~~~~~~~~~ 253 (827)
......+..+. +++||+.++++. .++.+++|+...++..
T Consensus 250 -----------------------~~~~~~~~~~~----------~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 250 -----------------------TDKIGLPRGLL----------LSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp -----------------------CCCCSEEEEEE----------ECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred -----------------------ecCCCCceEEE----------EcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence 01112244444 667777666655 3556778887655432
Q ss_pred --cCCCCcEE-EEEcCCCC-EEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc--
Q 003356 254 --LGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-- 327 (827)
Q Consensus 254 --~~h~~~v~-va~sp~~~-lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~-- 327 (827)
..|...+. ++|+|+++ ++++++.|++|++||+.+ ++....+. +...+.+++|+|||+.|++++.
T Consensus 297 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~---------~~~~~~~~~~s~dg~~l~~~~~~~ 366 (433)
T 3bws_A 297 DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIP---------VFDKPNTIALSPDGKYLYVSCRGP 366 (433)
T ss_dssp EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEE---------CSSSEEEEEECTTSSEEEEEECCC
T ss_pred eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEec---------CCCCCCeEEEcCCCCEEEEEecCC
Confidence 23334444 99999997 556778999999999987 66665554 5677999999999999998887
Q ss_pred -------------CCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc----eeEEEccCC
Q 003356 328 -------------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYG 382 (827)
Q Consensus 328 -------------Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~i~~W~~~~ 382 (827)
||.|++||+.+++....+..+ ..+.+++|+|++ ..++.+. .+.+|+.++
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--NQPTGLDVSPDN----RYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--SSEEEEEECTTS----CEEEEEETTTTEEEEEEETT
T ss_pred CccccccccccccceEEEEEECCCCcEEEEecCC--CCCceEEEcCCC----CEEEEEECCCCeEEEEEecC
Confidence 579999999999988887764 468889999987 5554321 666776543
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.81 E-value=5.2e-18 Score=179.34 Aligned_cols=148 Identities=7% Similarity=0.029 Sum_probs=107.3
Q ss_pred eEEEEEe---CCcEEEEeeccCccccceeecccee---cCCC---CcEE-EEEcCCCCEE------------EEEecCCe
Q 003356 222 LLFVLYS---NGQLMSCSVSKKGLKLAEFIKIDKE---LGSG---DAVC-ASIAPEQQIL------------AVGTRRGV 279 (827)
Q Consensus 222 ~~~~~s~---dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~---~~v~-va~sp~~~ll------------a~g~~dg~ 279 (827)
..+.|++ ||.++++++.|+++++||..+++.+ .+|. ..++ ++|+|+|.++ |+|+.|++
T Consensus 182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t 261 (356)
T 2w18_A 182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ 261 (356)
T ss_dssp CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence 3455677 7899999999999999999887654 3332 3454 8999999986 67889999
Q ss_pred EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeec
Q 003356 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (827)
Q Consensus 280 v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~s 359 (827)
|++||..+ ++.+..+.. .+..+|.+.+.+..++ |..+|+|+.|++|+|||+.+++++.++.+|....+.+++|+
T Consensus 262 IklWd~~t-gk~l~v~~~---~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS 335 (356)
T 2w18_A 262 LIVINPKT-TLSVGVMLY---CLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS 335 (356)
T ss_dssp EEEEETTT-TEEEEEEEE---CCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC
T ss_pred EEEEECCC-CEEEEEEEe---eccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC
Confidence 99999987 766655431 1123477765555544 88999999999999999999999999998843334468899
Q ss_pred CCCCCCccceeecc---eeEEEc
Q 003356 360 PNQDCKYEPLMSGT---SMMQWD 379 (827)
Q Consensus 360 p~~~~~~~~l~sg~---~i~~W~ 379 (827)
|++ ..+++|+ ++++|+
T Consensus 336 PDG----~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 336 GTD----SHLLAGQKDGNIFVYH 354 (356)
T ss_dssp SSS----SEEEEECTTSCEEEEE
T ss_pred CCC----CEEEEEECCCcEEEec
Confidence 988 6666554 555554
No 129
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.80 E-value=2.7e-17 Score=181.63 Aligned_cols=254 Identities=12% Similarity=0.071 Sum_probs=183.9
Q ss_pred cEEEEeeccCccccceeecccee---cCCCCcEEEEEcCCCCEE-EEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCC
Q 003356 231 QLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (827)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~va~sp~~~ll-a~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h 306 (827)
.+++++..++++++|+....+.. ..|....+++|+|+++.+ ++++.|++|++||+.+ ++.+..+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~--------- 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPA--------- 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEEC---------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCC-CeEEEEEEC---------
Confidence 45666677888888987765443 556666669999999976 6777999999999987 777777665
Q ss_pred CCCeEEEEECCCCCEEEEE-EcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce-eecc---eeEEEccC
Q 003356 307 TGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDEY 381 (827)
Q Consensus 307 ~~~V~~l~~spDg~~Lasg-~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l-~sg~---~i~~W~~~ 381 (827)
...+.+++|+|||+.|+++ +.|+.|++||+.+++....+..+ ..+.+++|+|++ ..+ +++. .+.+|+..
T Consensus 73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~~v~~~d~~ 146 (391)
T 1l0q_A 73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDG----KKLYVTNNGDKTVSVINTV 146 (391)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTS----SEEEEEETTTTEEEEEETT
T ss_pred CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC--CCcceEEECCCC----CEEEEEeCCCCEEEEEECC
Confidence 3489999999999988655 46799999999999988887765 468899999998 654 4543 89999999
Q ss_pred CceEEEEecCCcce-EEEEec-ceee-eecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEE
Q 003356 382 GYRLYAIEEGSSER-VLIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (827)
Q Consensus 382 ~~~l~~~~~~~~~~-v~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~v 458 (827)
+++.......+... -..+++ ++.+ ++++.++.+++|++..+.. .....+...+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~---------------------~~~~~~~~~~~~~ 205 (391)
T 1l0q_A 147 TKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV---------------------IDTVKVEAAPSGI 205 (391)
T ss_dssp TTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE---------------------EEEEECSSEEEEE
T ss_pred CCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE---------------------EEEEecCCCccce
Confidence 99888777654332 255565 5555 6778889999998643211 1122345578999
Q ss_pred EEcCCCCEEEEEe---CCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeC--CEEEEEEEeeCCCcEEEEEeeCC
Q 003356 459 AASKDGMFLAVAG---LHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 459 a~SpdG~~lavag---~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~--~~li~~~~~~~~~~~~lrly~~~ 529 (827)
+|+|+|+++++++ .++.+ +||+.+++....-. . ...+.++.|.. +.+++++ .....+++|...
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~--~--~~~~~~~~~s~dg~~l~~s~----~~d~~v~v~d~~ 274 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP--V--GPDPAGIAVTPDGKKVYVAL----SFXNTVSVIDTA 274 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE--C--CSSEEEEEECTTSSEEEEEE----TTTTEEEEEETT
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe--c--CCCccEEEEccCCCEEEEEc----CCCCEEEEEECC
Confidence 9999999999998 68999 99999886432110 0 01245788874 4554442 233568888764
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.77 E-value=1.4e-16 Score=191.67 Aligned_cols=340 Identities=12% Similarity=0.074 Sum_probs=201.0
Q ss_pred CcccEEEEcCCccEEEEEec-Cc-----EEEEEEEEecCceeecCCCCC--CCceeeeEeeEeeccccccc-ccceEEEe
Q 003356 68 GENLQAVWSPDTKLIAVVTS-SL-----YLHIFKVQITEKSIQIGGKQP--SGLFFIKISLVLNEQLPFAE-KGLSVSNI 138 (827)
Q Consensus 68 G~~~~v~wSPDg~~lav~t~-dg-----~l~l~~v~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~-~~~~v~~~ 138 (827)
+.+.+++|||||++||+++. +| .|++|++..+........+.. .+..+..-+-...+...+.+ ....-.++
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 34678999999999999998 87 899999876543322211100 00000000000000000010 01122367
Q ss_pred ecCCCeEEEEecCCcEEEEecCCccC-cceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEc
Q 003356 139 VSDNKHMLLGLSDGSLYSISWKGEFY-GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (827)
Q Consensus 139 ~~d~~~llv~t~dg~i~~~~w~~~~~-~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 217 (827)
++|++.|++++. +.+.+|+.++... ... .+......+..+.
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-----------------------------------~l~~~~~~~~~~~-- 158 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVR-----------------------------------QLTHGEGFATDAK-- 158 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSCC-----------------------------------BCCCSSSCEEEEE--
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceEE-----------------------------------EcccCCccccccc--
Confidence 889999888876 7787755443200 100 0111223344444
Q ss_pred CCcceEEEEEeCCcEEEEeeccCccccceeecccee---cCCCCc----------------EE-EEEcCCCCEEEEEecC
Q 003356 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA----------------VC-ASIAPEQQILAVGTRR 277 (827)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~----------------v~-va~sp~~~lla~g~~d 277 (827)
++|||+.++.+.+ .++.+|+...++.. ..+... +. ++|||||+.||+++.|
T Consensus 159 --------~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d 229 (741)
T 2ecf_A 159 --------LSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARID 229 (741)
T ss_dssp --------ECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEE
T ss_pred --------CCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEc
Confidence 6777777666553 46777776544322 122221 24 8999999999999887
Q ss_pred C---------------------------------eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEE
Q 003356 278 G---------------------------------VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (827)
Q Consensus 278 g---------------------------------~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Las 324 (827)
+ .|.+||+.+. .....+.. ...|...+.+++| |||+.|++
T Consensus 230 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~-~~~~~~~~-----~~~~~~~~~~~~~-pDg~~l~~ 302 (741)
T 2ecf_A 230 ESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ-AQTQWIDL-----GKEQDIYLARVNW-RDPQHLSF 302 (741)
T ss_dssp CTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT-CCCEEECC-----CSCSSEEEEEEEE-EETTEEEE
T ss_pred CCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC-CceEEecC-----CCCcceEEEEEEe-CCCCEEEE
Confidence 6 7888887640 22222221 0127788999999 99999998
Q ss_pred EEc-----CCcEEEEeccCCeeEEEecccccc---ceeeeeecCCCCCCccceeecc---eeEEE--ccCCceEEEEecC
Q 003356 325 GWK-----SRGLTVWSVSGCRLMSTIRQISLS---SISSPIVKPNQDCKYEPLMSGT---SMMQW--DEYGYRLYAIEEG 391 (827)
Q Consensus 325 g~~-----Dg~v~vWs~~~~~l~~tl~~~~~~---~v~s~~~sp~~~~~~~~l~sg~---~i~~W--~~~~~~l~~~~~~ 391 (827)
++. +..|++||+.++++...+..+... .+.+++|+|++ ..++++. ...+| +..+. ...+..
T Consensus 303 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg----~~~~~~~~~g~~~l~~~~~~~~--~~~l~~ 376 (741)
T 2ecf_A 303 QRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG----SILWSSERTGFQHLYRIDSKGK--AAALTH 376 (741)
T ss_dssp EEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS----CEEEEECTTSSCEEEEECSSSC--EEESCC
T ss_pred EEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC----eEEEEecCCCccEEEEEcCCCC--eeeeee
Confidence 764 567999999998877766654322 34689999998 6555443 33444 44444 555555
Q ss_pred CcceEE---EEec-ceee-eecccCC--CeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCC
Q 003356 392 SSERVL---IFSF-GKCC-LNRGVSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (827)
Q Consensus 392 ~~~~v~---~~~~-~~~~-~s~~~d~--~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG 464 (827)
+...+. .+++ ++.+ ++++.++ .+++|.+...... +..+.. ...+.+++|||||
T Consensus 377 ~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~-------------------~~~l~~-~~~~~~~~~spdg 436 (741)
T 2ecf_A 377 GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ-------------------PQRLSK-APGMHSASFARNA 436 (741)
T ss_dssp SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC-------------------CEECCC-SCSEEEEEECTTS
T ss_pred cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC-------------------eeeccc-CCCceEEEECCCC
Confidence 555553 4666 5555 4555555 7888887542221 233333 4568899999999
Q ss_pred CEEEEEeCC----ceE-EEEcCCCeEEe
Q 003356 465 MFLAVAGLH----GLI-LYDIRQKKWRV 487 (827)
Q Consensus 465 ~~lavag~d----g~i-iwd~~t~~w~~ 487 (827)
++++....+ +.+ +|+..++..+.
T Consensus 437 ~~l~~~~~~~~~p~~~~l~~~~~~~~~~ 464 (741)
T 2ecf_A 437 SVYVDSWSNNSTPPQIELFRANGEKIAT 464 (741)
T ss_dssp SEEEEEEEETTEEEEEEEEETTSCEEEC
T ss_pred CEEEEEecCCCCCCeEEEEEcCCCeEEE
Confidence 999887554 345 77776655443
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.75 E-value=7.5e-17 Score=180.24 Aligned_cols=203 Identities=13% Similarity=0.059 Sum_probs=144.0
Q ss_pred EEEEeCCcEEEEeeccC---ccccceeecccee--cCCCCcEE-EEEcCCCCEEE-EEecCC--eEEEEEcCCCCcceEE
Q 003356 224 FVLYSNGQLMSCSVSKK---GLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILA-VGTRRG--VVELYDLAESASLIRT 294 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~---~~~~~~~~~~~~~--~~h~~~v~-va~sp~~~lla-~g~~dg--~v~vw~~~~~~~~~~~ 294 (827)
+.++|||+.+++++.+. ++++|+..+++.. ..|...+. ++|+|||+.|| +++.|| .|++||+.+ ++. ..
T Consensus 184 ~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~~-~~ 261 (415)
T 2hqs_A 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI-RQ 261 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-EE
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CCE-Ee
Confidence 44778888777777653 7788887765433 55666666 99999999888 666665 489999876 443 44
Q ss_pred EEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC-C--cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceee
Q 003356 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (827)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D-g--~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~s 371 (827)
+.. |.+.+.+++|+|||+.|++++.+ + .|.+|++.+++. ..+..+ ...+.+++|+|++ ..++.
T Consensus 262 l~~--------~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~spdG----~~l~~ 327 (415)
T 2hqs_A 262 VTD--------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDG----KFMVM 327 (415)
T ss_dssp CCC--------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCS-SSEEEEEEECTTS----SEEEE
T ss_pred CcC--------CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecC-CCcccCeEECCCC----CEEEE
Confidence 444 78899999999999999988864 4 577779888764 334344 3568899999999 66654
Q ss_pred cc------eeEEEccCCceEEEEecCCcceE--EEEec-ceeeeecccCC---CeeeeEEEEcCCeEEEEecCCCCcceE
Q 003356 372 GT------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKI 439 (827)
Q Consensus 372 g~------~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~---~~~~w~~~~~~~~~~~~~~~d~~~~~w 439 (827)
+. .+..|+..++++.... .+. .+ ..+++ ++.+++++.++ .+.+|++. +..
T Consensus 328 ~~~~~g~~~i~~~d~~~~~~~~l~-~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~--------------- 389 (415)
T 2hqs_A 328 VSSNGGQQHIAKQDLATGGVQVLS-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRF--------------- 389 (415)
T ss_dssp EEECSSCEEEEEEETTTCCEEECC-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCC---------------
T ss_pred EECcCCceEEEEEECCCCCEEEec-CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCc---------------
Confidence 43 6889999988875433 332 34 55565 77787777666 45555532 222
Q ss_pred EEeeeceeeccCCCcEEEEEEcCCCC
Q 003356 440 LHLNLPVSYISQNWPVQHVAASKDGM 465 (827)
Q Consensus 440 ~~~~~p~~~~~~~~~I~~va~SpdG~ 465 (827)
...+..|++.|++++|||.-.
T Consensus 390 -----~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 390 -----KARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp -----EEECCCSSSEEEEEEECCCCC
T ss_pred -----EEEeeCCCCCCcCCccccccc
Confidence 345667889999999999754
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.73 E-value=5.1e-17 Score=195.00 Aligned_cols=170 Identities=8% Similarity=-0.022 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC----CcEEEEeccCCeeEEEeccccccce-
Q 003356 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCRLMSTIRQISLSSI- 353 (827)
Q Consensus 279 ~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D----g~v~vWs~~~~~l~~tl~~~~~~~v- 353 (827)
+|++||+.+ ++....+.... ....+.+.+.+++|||||+.|++...+ ..|++||+.++++...+..++...+
T Consensus 229 ~l~~~d~~~-~~~~~~l~~~~--~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 305 (723)
T 1xfd_A 229 SLHVIGLNG-PTHDLEMMPPD--DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLH 305 (723)
T ss_dssp EEEEEESSS-SCCCEECCCCC--CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred EEEEEECCC-CceeEEeeCCc--cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEe
Confidence 789999877 55444443310 001136789999999999999877543 5799999999887666554323333
Q ss_pred ---eeeeecCCCCCCccceeec--c---------eeEEEc-cCCce---EEEEecCCcce--EEEEec-ceeeeecc-cC
Q 003356 354 ---SSPIVKPNQDCKYEPLMSG--T---------SMMQWD-EYGYR---LYAIEEGSSER--VLIFSF-GKCCLNRG-VS 411 (827)
Q Consensus 354 ---~s~~~sp~~~~~~~~l~sg--~---------~i~~W~-~~~~~---l~~~~~~~~~~--v~~~~~-~~~~~s~~-~d 411 (827)
.+++|+|++ ..++.. . .+..|+ ..+++ ......++... +..+++ ++.++..+ .+
T Consensus 306 ~~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~ 381 (723)
T 1xfd_A 306 RQNEEPVFSKDG----RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTED 381 (723)
T ss_dssp CCCCCCEECTTS----CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred ccCCCceEcCCC----CeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC
Confidence 378999998 544421 1 356677 34444 22222222222 245666 66665443 33
Q ss_pred --CCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeecc---CCCcEEEEEEcCCCCEEEEEeCC
Q 003356 412 --GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS---QNWPVQHVAASKDGMFLAVAGLH 473 (827)
Q Consensus 412 --~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~---~~~~I~~va~SpdG~~lavag~d 473 (827)
+..++|.+...... .+..+.. |...+..++|||||++++.....
T Consensus 382 ~~~~~~l~~~~~~~~~------------------~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 382 LPRRRQLYSANTVGNF------------------NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp CTTCCEEEEECSSTTC------------------CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred CCcceEEEEEeCCCCC------------------CcceecccccCCCCeEEEEECCCCCEEEEEccC
Confidence 67788876533210 0122222 55668899999999999886543
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.69 E-value=1.7e-15 Score=175.00 Aligned_cols=285 Identities=10% Similarity=0.031 Sum_probs=191.4
Q ss_pred EEEEeCCcEEEEeeccCcccccee--ecccee--cCCCCcEE-EEEcC----CCCEEEEEec-CCeEEEEEcCCCCcceE
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEF--IKIDKE--LGSGDAVC-ASIAP----EQQILAVGTR-RGVVELYDLAESASLIR 293 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~--~~~~~~--~~h~~~v~-va~sp----~~~lla~g~~-dg~v~vw~~~~~~~~~~ 293 (827)
+.++|||+.++++..++++.+|+. .+.+.. ..+....+ ++|+| ||+++++++. +++|.+||..+ .+.++
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~~ 262 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPKQ 262 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEEE
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-cccce
Confidence 558899999999888889999998 554432 12333445 99999 9999999985 89999999988 77777
Q ss_pred EEEeecCCCCC--CCCC-CeEEEEECCCCC-EEEEEEcCCcEEEEeccCCeeEE--EeccccccceeeeeecCCCCCCcc
Q 003356 294 TVSLYDWGYSM--DDTG-PVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMS--TIRQISLSSISSPIVKPNQDCKYE 367 (827)
Q Consensus 294 ~l~~~~~~~~~--~h~~-~V~~l~~spDg~-~Lasg~~Dg~v~vWs~~~~~l~~--tl~~~~~~~v~s~~~sp~~~~~~~ 367 (827)
++......... -|.+ .+.++.+|||+. ++++...++.|.+||..+..... ++. + ......++|+|++ +
T Consensus 263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~-~~~~~~~~~spdg----~ 336 (543)
T 1nir_A 263 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-A-APFLHDGGWDSSH----R 336 (543)
T ss_dssp EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-C-CSSCCCEEECTTS----C
T ss_pred eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-c-CcCccCceECCCC----C
Confidence 77642110000 0223 789999999776 56677788999999997754333 333 2 2457788999998 6
Q ss_pred ceeec-c---eeEEEccCCceEEEEecC----CcceEEEE-ec--ceeeeecc-cCCCeeeeEEEEcCCeEEEEecCCCC
Q 003356 368 PLMSG-T---SMMQWDEYGYRLYAIEEG----SSERVLIF-SF--GKCCLNRG-VSGMTYARQVIYGEDRLLVVQSEDTD 435 (827)
Q Consensus 368 ~l~sg-~---~i~~W~~~~~~l~~~~~~----~~~~v~~~-~~--~~~~~s~~-~d~~~~~w~~~~~~~~~~~~~~~d~~ 435 (827)
.++.+ . ++.+||..++++...... |..+...+ ++ ++.+++++ .|+++.+|+...... +
T Consensus 337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~----------~ 406 (543)
T 1nir_A 337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH----------P 406 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----------T
T ss_pred EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCC----------c
Confidence 54432 2 889999999999887653 44333333 33 56667765 578899988644211 1
Q ss_pred cceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeC-------CceE-EEEcCCCeEE--eeCCcc-----ceEEEEEE
Q 003356 436 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-------HGLI-LYDIRQKKWR--VFGDIT-----QEQKIQSK 500 (827)
Q Consensus 436 ~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~-------dg~i-iwd~~t~~w~--~f~~~~-----~e~~~~v~ 500 (827)
+..|+ +.+++..|...+..++++|||++|++++. ++.+ +||+.+++-. .+ +.. .|..-.+.
T Consensus 407 ~~~~~---~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~v~~~~~~~~~~~~~~ 482 (543)
T 1nir_A 407 QYAWK---KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL-PIAEWADLGEGAKRVV 482 (543)
T ss_dssp TTBTS---EEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE-CHHHHHCCCSSCCEEE
T ss_pred hhcCe---EEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEe-echhhcccCCCCCceE
Confidence 11222 23455567677888999999999999972 5678 9999988632 11 000 11122456
Q ss_pred EEEEe--CCEEEEEEEeeCCCcEEEEEeeCC
Q 003356 501 GLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 501 gl~W~--~~~li~~~~~~~~~~~~lrly~~~ 529 (827)
.+.+. ++.+.+++....+.+..|.+|...
T Consensus 483 ~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 483 QPEYNKRGDEVWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp EEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred eccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence 66775 567777755544455778888765
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.69 E-value=1.7e-15 Score=169.16 Aligned_cols=223 Identities=15% Similarity=0.096 Sum_probs=155.2
Q ss_pred Cccccceeecc--ceecCCCCcEE-EEEcCCCCEEEEEecCC---eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEE
Q 003356 240 KGLKLAEFIKI--DKELGSGDAVC-ASIAPEQQILAVGTRRG---VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (827)
Q Consensus 240 ~~~~~~~~~~~--~~~~~h~~~v~-va~sp~~~lla~g~~dg---~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l 313 (827)
+++++|+.... ..+.+|...+. ++|||||+.||+++.|+ +|++||+.+ ++.. .+.. |.+.+.++
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~~-~l~~--------~~~~~~~~ 228 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAVR-QVAS--------FPRHNGAP 228 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCEE-EEEC--------CSSCEEEE
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CcEE-Eeec--------CCCcccCE
Confidence 45566665432 22355676776 99999999999999885 999999987 5443 4555 78899999
Q ss_pred EECCCCCEEE-EEEcCCc--EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc------eeEEEccCCce
Q 003356 314 AWTPDNSAFA-VGWKSRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYR 384 (827)
Q Consensus 314 ~~spDg~~La-sg~~Dg~--v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~i~~W~~~~~~ 384 (827)
+|||||+.|| +++.|+. |++||+.++++ ..+..+ ...+.+++|+|++ ..++.++ .+..|+..+++
T Consensus 229 ~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~spdg----~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 229 AFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG-RSNNTEPTWFPDS----QNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC-SSCEEEEEECTTS----SEEEEEECTTSSCEEEEEETTSSC
T ss_pred EEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC-CCcccceEECCCC----CEEEEEECCCCCcEEEEEECCCCC
Confidence 9999999888 6666655 99999988765 456555 4678999999998 6555433 56777888776
Q ss_pred EEEEecCCcceE--EEEec-ceeeeecccC---CCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEE
Q 003356 385 LYAIEEGSSERV--LIFSF-GKCCLNRGVS---GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (827)
Q Consensus 385 l~~~~~~~~~~v--~~~~~-~~~~~s~~~d---~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~v 458 (827)
.... ..+...+ .++++ ++.++.++.+ ..+.+|++..+.. ..+..+. .+.++
T Consensus 303 ~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---------------------~~l~~~~-~~~~~ 359 (415)
T 2hqs_A 303 PQRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------------------QVLSSTF-LDETP 359 (415)
T ss_dssp CEEC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---------------------EECCCSS-SCEEE
T ss_pred EEEE-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---------------------EEecCCC-CcCCe
Confidence 4332 2334445 45555 7777776654 3455555432211 2233343 78999
Q ss_pred EEcCCCCEEEEEeCCc---eE-EEEcCCCeEEeeCCccceEEEEEEEEEEe
Q 003356 459 AASKDGMFLAVAGLHG---LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL 505 (827)
Q Consensus 459 a~SpdG~~lavag~dg---~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~ 505 (827)
+|+|||++|++++.++ .+ +||+.++..+.+... ...|..++|.
T Consensus 360 ~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~----~~~v~~~~~~ 406 (415)
T 2hqs_A 360 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT----DGQVKFPAWS 406 (415)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS----SSEEEEEEEC
T ss_pred EEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC----CCCCcCCccc
Confidence 9999999999998877 67 999987766655322 2246677775
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.67 E-value=1.1e-14 Score=174.21 Aligned_cols=228 Identities=13% Similarity=0.068 Sum_probs=145.6
Q ss_pred EEEeCCcEEEEeeccCccccceeec-----ccee---cCCCCc--------------EE-EEEcCCCCEEEEEe------
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIK-----IDKE---LGSGDA--------------VC-ASIAPEQQILAVGT------ 275 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~-----~~~~---~~h~~~--------------v~-va~sp~~~lla~g~------ 275 (827)
.++|||+.+++. .++++.+|+... ++.. ..+... +. ++|||||+.||+++
T Consensus 127 ~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~ 205 (706)
T 2z3z_A 127 DFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMV 205 (706)
T ss_dssp EECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTS
T ss_pred cCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCC
Confidence 467777777664 456777777665 4322 222221 24 99999999999998
Q ss_pred ---------------------------cCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC
Q 003356 276 ---------------------------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (827)
Q Consensus 276 ---------------------------~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D 328 (827)
.+++|.+||+.+ ++....... ..|...+.+++|||||+.|++++.|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~~~~~ 278 (706)
T 2z3z_A 206 KPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT-GKTVYLQTG------EPKEKFLTNLSWSPDENILYVAEVN 278 (706)
T ss_dssp CCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT-TEEEECCCC------SCTTCEEEEEEECTTSSEEEEEEEC
T ss_pred ceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC-CceEeeccC------CCCceeEeeEEEECCCCEEEEEEeC
Confidence 446899999976 443221111 1267789999999999999998877
Q ss_pred C-----cEEEEeccCCeeEEEec-ccccc---ceeeeeecC--CCCCCccceeecc---eeEEEccC-CceEEEEecCCc
Q 003356 329 R-----GLTVWSVSGCRLMSTIR-QISLS---SISSPIVKP--NQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGSS 393 (827)
Q Consensus 329 g-----~v~vWs~~~~~l~~tl~-~~~~~---~v~s~~~sp--~~~~~~~~l~sg~---~i~~W~~~-~~~l~~~~~~~~ 393 (827)
+ .|++||+.++.....+. ..... .+.+++|+| ++ ..++++. ...+|... .++.+..+..+.
T Consensus 279 ~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg----~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~ 354 (706)
T 2z3z_A 279 RAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN----QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE 354 (706)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS----EEEEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred CCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC----EEEEEEccCCccEEEEEECCCCEEEecCCCC
Confidence 6 89999999883333332 22121 246789999 88 6665443 46667654 444455555554
Q ss_pred ceE---EEEec-ceeeee-cccCC--CeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCE
Q 003356 394 ERV---LIFSF-GKCCLN-RGVSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMF 466 (827)
Q Consensus 394 ~~v---~~~~~-~~~~~s-~~~d~--~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~ 466 (827)
..+ ..+++ ++.++. ++.++ ...+|.+...... +. .+.+...+.+++|||||++
T Consensus 355 ~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-------------------~~-~l~~~~~~~~~~~spdg~~ 414 (706)
T 2z3z_A 355 WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-------------------TK-DLTPESGMHRTQLSPDGSA 414 (706)
T ss_dssp SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-------------------CE-ESCCSSSEEEEEECTTSSE
T ss_pred eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-------------------ce-eccCCCceEEEEECCCCCE
Confidence 444 45666 555543 33433 3455554322221 11 2235567899999999999
Q ss_pred EEEEeCC----ceE-EEEcCCCe
Q 003356 467 LAVAGLH----GLI-LYDIRQKK 484 (827)
Q Consensus 467 lavag~d----g~i-iwd~~t~~ 484 (827)
++.++.+ +.+ +||+.+++
T Consensus 415 l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 415 IIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEecCCCCCcEEEEEECCCCe
Confidence 9887554 457 99998886
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.66 E-value=1.2e-14 Score=152.59 Aligned_cols=240 Identities=10% Similarity=0.045 Sum_probs=155.2
Q ss_pred cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEe-cCceeecCCCCCCCceeee
Q 003356 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI-TEKSIQIGGKQPSGLFFIK 117 (827)
Q Consensus 39 ~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~-~~~~~~~~~~~~~~~~~~~ 117 (827)
+++|.+|+.. .+.... +. ...+.+.+++|||||++||++. ++.|.+|++.. +........+.
T Consensus 21 ~~~i~~~d~~-~~~~~~-~~------~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-------- 83 (297)
T 2ojh_A 21 RSSIEIFNIR-TRKMRV-VW------QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA-------- 83 (297)
T ss_dssp CEEEEEEETT-TTEEEE-EE------EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC--------
T ss_pred ceeEEEEeCC-CCceee-ec------cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc--------
Confidence 5689999985 443322 21 1246678999999999999986 78999999865 33221111100
Q ss_pred EeeEeecccccccccceEEEeecCCCeEEEEe--cCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCcccccc
Q 003356 118 ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL--SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (827)
Q Consensus 118 ~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t--~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~ 195 (827)
.....-.+++++++.++++. .++...++.++........
T Consensus 84 ------------~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~--------------------------- 124 (297)
T 2ojh_A 84 ------------TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL--------------------------- 124 (297)
T ss_dssp ------------CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE---------------------------
T ss_pred ------------cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE---------------------------
Confidence 00111235678888888888 3455666666533221110
Q ss_pred CCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEE-EeeccCccccceeec--cc--eecCCCCcEE-EEEcCCCC
Q 003356 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMS-CSVSKKGLKLAEFIK--ID--KELGSGDAVC-ASIAPEQQ 269 (827)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~-~~~~~~~~~~~~~~~--~~--~~~~h~~~v~-va~sp~~~ 269 (827)
+.. ...+..+ .++|||+.++ ++..++.+++|+... .+ .+..+...+. ++|+|+++
T Consensus 125 --------~~~-~~~~~~~----------~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 185 (297)
T 2ojh_A 125 --------MTK-NLPSYWH----------GWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGR 185 (297)
T ss_dssp --------CCS-SSSEEEE----------EECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSS
T ss_pred --------eec-CCCccce----------EECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCC
Confidence 000 1113333 4677777665 455566667776432 11 2244555555 99999999
Q ss_pred EEEEEe-cCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC-----------CcEEEEecc
Q 003356 270 ILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-----------RGLTVWSVS 337 (827)
Q Consensus 270 lla~g~-~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D-----------g~v~vWs~~ 337 (827)
.|++++ .|+.+++|+++..+.....+.. |...+.+++|+|||++|++++.+ +.|.+|++.
T Consensus 186 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~ 257 (297)
T 2ojh_A 186 WIYFNSSRTGQMQIWRVRVDGSSVERITD--------SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD 257 (297)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCEEECCC--------CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred EEEEEecCCCCccEEEECCCCCCcEEEec--------CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence 888776 5899999998743555555555 77889999999999999988876 469999998
Q ss_pred CCee--EEEeccccccceeeeeecCCC
Q 003356 338 GCRL--MSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 338 ~~~l--~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+++. +..+.+| ...+.+++|+|++
T Consensus 258 ~~~~~~~~~~~~~-~~~~~~~~~spdg 283 (297)
T 2ojh_A 258 GGNVETLFDLFGG-QGTMNSPNWSPDG 283 (297)
T ss_dssp SCSCEEEEEEEES-TTTSCSCCBCTTS
T ss_pred CCCceeeeccCCC-CcccccceECCCC
Confidence 8765 3333344 4568888899887
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.66 E-value=1e-13 Score=149.17 Aligned_cols=279 Identities=13% Similarity=0.102 Sum_probs=159.0
Q ss_pred ceEEEEE-ccCeEEEeecCCce--eEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecC-cEEEEEEEEecCceeecC
Q 003356 31 NGLLLIA-SPCHIELWSSSQHK--VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS-LYLHIFKVQITEKSIQIG 106 (827)
Q Consensus 31 g~lla~~-~~~~v~IW~~~~~~--~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~d-g~l~l~~v~~~~~~~~~~ 106 (827)
..+|++. .+++|.+|+.+..+ ..+... ...+....++|+|||++|++++.+ +.|.+|++.......
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~--- 74 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL--- 74 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-------ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce---
Confidence 3455554 57899999984222 122221 123556789999999999998887 899999996221100
Q ss_pred CCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec-CCcEEEEecCCccCcceeecccCCCCcccceeccc
Q 003356 107 GKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (827)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~-dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s 185 (827)
..+..+ . ... ...-.+++++++.++++.. ++.+.+|+.+ . ...... +..
T Consensus 75 ------~~~~~~----~----~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~-~~~~~~---------~~~---- 124 (343)
T 1ri6_A 75 ------TFAAES----A----LPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE-D-GLPVGV---------VDV---- 124 (343)
T ss_dssp ------EEEEEE----E----CSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE-T-TEEEEE---------EEE----
T ss_pred ------eecccc----c----cCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC-C-Cccccc---------ccc----
Confidence 000100 0 111 2233467788888888775 7788887653 1 110100 000
Q ss_pred CCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEee-ccCccccceeec-cce-------ec-C
Q 003356 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIK-IDK-------EL-G 255 (827)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~~~~~~~~~~~~-~~~-------~~-~ 255 (827)
......+.. +.+++||+.++++. .++.+.+|+... ++. .. .
T Consensus 125 -------------------~~~~~~~~~----------~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 175 (343)
T 1ri6_A 125 -------------------VEGLDGCHS----------ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV 175 (343)
T ss_dssp -------------------ECCCTTBCC----------CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS
T ss_pred -------------------ccCCCCceE----------EEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccC
Confidence 000111222 34667777555555 566777777654 211 11 1
Q ss_pred CCCcE-EEEEcCCCCEEEEEe-cCCeEEEEEcCCCCcceEEEE-eecCCCCCCCCCCeEEEEECCCCCEEEEE-EcCCcE
Q 003356 256 SGDAV-CASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVS-LYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGL 331 (827)
Q Consensus 256 h~~~v-~va~sp~~~lla~g~-~dg~v~vw~~~~~~~~~~~l~-~~~~~~~~~h~~~V~~l~~spDg~~Lasg-~~Dg~v 331 (827)
..... .++|+|+++++++++ .++.|++|+++.......... ....+........+.+++|+|||+.|+++ ..|+.|
T Consensus 176 ~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i 255 (343)
T 1ri6_A 176 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLI 255 (343)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEE
Confidence 22334 499999999766554 789999999964222221111 11111111123467789999999987754 478999
Q ss_pred EEEecc--CC--eeEEEeccccccceeeeeecCCCCCCccceeecc----eeEEE--ccCCce
Q 003356 332 TVWSVS--GC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQW--DEYGYR 384 (827)
Q Consensus 332 ~vWs~~--~~--~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~i~~W--~~~~~~ 384 (827)
++|++. ++ +.+..+..+ ..+..++|+|++ ..++.+. .+.+| +..+++
T Consensus 256 ~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 256 TVFSVSEDGSVLSKEGFQPTE--TQPRGFNVDHSG----KYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp EEEEECTTSCCEEEEEEEECS--SSCCCEEECTTS----SEEEEECTTTCEEEEEEEETTTTE
T ss_pred EEEEEcCCCCceEEeeeecCC--CccceEEECCCC----CEEEEecCCCCeEEEEEEcCCCce
Confidence 999997 33 344444443 237788899987 5443322 56677 333443
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.65 E-value=4.4e-14 Score=151.85 Aligned_cols=235 Identities=12% Similarity=0.089 Sum_probs=137.4
Q ss_pred EEEcCCccE-EEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec-
Q 003356 73 AVWSPDTKL-IAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS- 150 (827)
Q Consensus 73 v~wSPDg~~-lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~- 150 (827)
+.|.+++.+ +++...++.|.+||+..+... ..+ . ...... ..+++++++.++++..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-------------~~~----~----~~~~~~-~~~~s~dg~~l~~~~~~ 60 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL-------------NQI----T----LGYDFV-DTAITSDCSNVVVTSDF 60 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE-------------EEE----E----CCCCEE-EEEECSSSCEEEEEEST
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee-------------eeE----E----ccCCcc-eEEEcCCCCEEEEEeCC
Confidence 457777776 555667899999998644311 100 0 111112 3467788888887776
Q ss_pred CCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCC
Q 003356 151 DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG 230 (827)
Q Consensus 151 dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG 230 (827)
++.+.+++.+..... . ..+.........+++++||
T Consensus 61 ~~~i~~~d~~~~~~~-~--------------------------------------------~~~~~~~~~~~~~~~s~dg 95 (331)
T 3u4y_A 61 CQTLVQIETQLEPPK-V--------------------------------------------VAIQEGQSSMADVDITPDD 95 (331)
T ss_dssp TCEEEEEECSSSSCE-E--------------------------------------------EEEEECSSCCCCEEECTTS
T ss_pred CCeEEEEECCCCcee-E--------------------------------------------EecccCCCCccceEECCCC
Confidence 777776544322110 0 0001111111114578889
Q ss_pred cEEEEeeccC---ccccceeecccee---cCCCCcEEEEEcCCCCEEEE-EecCCe-EEEEEcCCCCcceEEEEeecCCC
Q 003356 231 QLMSCSVSKK---GLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAV-GTRRGV-VELYDLAESASLIRTVSLYDWGY 302 (827)
Q Consensus 231 ~~~~~~~~~~---~~~~~~~~~~~~~---~~h~~~v~va~sp~~~lla~-g~~dg~-v~vw~~~~~~~~~~~l~~~~~~~ 302 (827)
+.++++..++ .+.+|+....+.. ..+..+..++|+|+|+.+++ +..++. |.+|+++. ...+........
T Consensus 96 ~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~-~g~~~~~~~~~~-- 172 (331)
T 3u4y_A 96 QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA-DGVLFDTGQEFI-- 172 (331)
T ss_dssp SEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT-TCCEEEEEEEEE--
T ss_pred CEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC-CCcEeecCCccc--
Confidence 8777544442 7888887655433 33344455999999985554 455578 99999986 333221111111
Q ss_pred CCCCCCCeEEEEECCCCCEEEE-EEcCCcEEEEeccCCee---EEEeccccccceeeeeecCCCCCCccce-eecc---e
Q 003356 303 SMDDTGPVSCIAWTPDNSAFAV-GWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---S 374 (827)
Q Consensus 303 ~~~h~~~V~~l~~spDg~~Las-g~~Dg~v~vWs~~~~~l---~~tl~~~~~~~v~s~~~sp~~~~~~~~l-~sg~---~ 374 (827)
........++|+|||+.|++ +..++.|++||+.+++. +.++..+ ..+..++|+|++ ..+ ++.. .
T Consensus 173 --~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg----~~l~v~~~~~~~ 244 (331)
T 3u4y_A 173 --SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDG----STVYVLTESTVD 244 (331)
T ss_dssp --CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTS----SEEEEECSSEEE
T ss_pred --cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCC----CEEEEEEcCCCE
Confidence 13455799999999996655 45688999999998887 6666543 456778888887 533 2211 4
Q ss_pred eEEEccCCceE
Q 003356 375 MMQWDEYGYRL 385 (827)
Q Consensus 375 i~~W~~~~~~l 385 (827)
+.+|+..++++
T Consensus 245 i~~~d~~~~~~ 255 (331)
T 3u4y_A 245 VFNFNQLSGTL 255 (331)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCce
Confidence 55566655543
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.65 E-value=1.7e-14 Score=173.65 Aligned_cols=263 Identities=12% Similarity=0.086 Sum_probs=173.8
Q ss_pred EEEEeCCcEEEEeeccCccccceeecc---c--eecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEe
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKI---D--KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~---~--~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
+.++|||+.++++.. +++.+|+...+ + .+..|...+. ++|||||++||+++ ++.|++||+.+ ++..+....
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~-g~~~~~~~~ 190 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS-GRQMQLTAD 190 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT-TEEEECCCC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC-CCEEEeccC
Confidence 568899998887776 78888987765 3 2355656666 99999999999987 56999999987 544332222
Q ss_pred ecCCCCCCCCC----------------CeEEEEECCCCCEEEEEEcCC--------------------------------
Q 003356 298 YDWGYSMDDTG----------------PVSCIAWTPDNSAFAVGWKSR-------------------------------- 329 (827)
Q Consensus 298 ~~~~~~~~h~~----------------~V~~l~~spDg~~Lasg~~Dg-------------------------------- 329 (827)
+.. .+.+++|||||+.||+++.|+
T Consensus 191 --------~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 191 --------GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp --------CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred --------CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 222 247899999999999998776
Q ss_pred -cEEEEeccC-CeeEEEecc-ccccceeeeeecCCCCCCccceeec--------ceeEEEccCCceEEEEecCCcc----
Q 003356 330 -GLTVWSVSG-CRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSG--------TSMMQWDEYGYRLYAIEEGSSE---- 394 (827)
Q Consensus 330 -~v~vWs~~~-~~l~~tl~~-~~~~~v~s~~~sp~~~~~~~~l~sg--------~~i~~W~~~~~~l~~~~~~~~~---- 394 (827)
.|.+||+.+ ++....... .+...+.+++| |++ +.++.. ..+..|+..++++......+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg----~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP----QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET----TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC----CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 789999988 775543322 12467889999 998 666532 2688999998887666544332
Q ss_pred e--EEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEE-EEcCCCCEEEE-
Q 003356 395 R--VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV-AASKDGMFLAV- 469 (827)
Q Consensus 395 ~--v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~v-a~SpdG~~lav- 469 (827)
. -..|++ ++.+++++.++..++|.+..... +..+..|.+.+..+ +|||||+.|+.
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~--------------------~~~l~~~~~~v~~~~~~s~dg~~l~~~ 397 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK--------------------AAALTHGNWSVDELLAVDEKAGLAYFR 397 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC--------------------EEESCCSSSCEEEEEEEETTTTEEEEE
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC--------------------eeeeeecceEEEeEeEEeCCCCEEEEE
Confidence 1 245666 77777888888888887542211 23455677888887 59999998765
Q ss_pred EeCCc--eE-EEEcCC-Ce-EEeeCCccceEEEEEEEEEEeC--CEEEEEEEeeCCCcEEEEEeeC
Q 003356 470 AGLHG--LI-LYDIRQ-KK-WRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPR 528 (827)
Q Consensus 470 ag~dg--~i-iwd~~t-~~-w~~f~~~~~e~~~~v~gl~W~~--~~li~~~~~~~~~~~~lrly~~ 528 (827)
++.++ .+ +|++.. ++ -+.+... . .+..+.|.. +.+++.+.. ...-.++.++..
T Consensus 398 ~~~~~~~~~~l~~~~~~g~~~~~l~~~---~--~~~~~~~spdg~~l~~~~~~-~~~p~~~~l~~~ 457 (741)
T 2ecf_A 398 AGIESARESQIYAVPLQGGQPQRLSKA---P--GMHSASFARNASVYVDSWSN-NSTPPQIELFRA 457 (741)
T ss_dssp ECSSCTTCBEEEEEETTCCCCEECCCS---C--SEEEEEECTTSSEEEEEEEE-TTEEEEEEEEET
T ss_pred EeCCCCceEEEEEEEcCCCCeeecccC---C--CceEEEECCCCCEEEEEecC-CCCCCeEEEEEc
Confidence 44454 67 998864 32 2222211 1 134567753 455544332 233345666654
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.64 E-value=9.5e-15 Score=170.68 Aligned_cols=244 Identities=14% Similarity=0.083 Sum_probs=160.8
Q ss_pred ceEEEEEecceEEEEEc--cCeEEEeecCCceeEEEEEEeChHhhhhc-CcccEEEEcCCccEEEEEec---CcEEEEEE
Q 003356 22 QQIIYFKVNNGLLLIAS--PCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTS---SLYLHIFK 95 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~--~~~v~IW~~~~~~~~l~~~~r~~~s~~~~-G~~~~v~wSPDg~~lav~t~---dg~l~l~~ 95 (827)
...++|||||+.+|.++ ++++.||+.+ .+.. ..+. ... +.+..++|||| +.++++.. +...++|.
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~-~g~~-~~lt------~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYD-GGET-VKLN------REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEE-TTEE-EECC------SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEc-CCCc-Eeee------cccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence 45588999999999874 7899999984 4322 1111 122 45778999999 78877765 45678888
Q ss_pred EEe--cCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEE-EecCCcEEEEecCCccCcceeeccc
Q 003356 96 VQI--TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL-GLSDGSLYSISWKGEFYGAFELVHS 172 (827)
Q Consensus 96 v~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv-~t~dg~i~~~~w~~~~~~~~~l~~~ 172 (827)
+.. ....... .......+.++++|++.++. ...++...+|+.+ ......
T Consensus 95 ~~~~~~g~~~~l----------------------~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~--~g~~~~---- 146 (582)
T 3o4h_A 95 VNTSRPGEEQRL----------------------EAVKPMRILSGVDTGEAVVFTGATEDRVALYALD--GGGLRE---- 146 (582)
T ss_dssp EETTSTTCCEEC----------------------TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEE--TTEEEE----
T ss_pred EeccCCCccccc----------------------cCCCCceeeeeCCCCCeEEEEecCCCCceEEEcc--CCcEEE----
Confidence 865 2211100 01111235588889976444 3445555554322 111110
Q ss_pred CCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeecc----Cccccceee
Q 003356 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK----KGLKLAEFI 248 (827)
Q Consensus 173 p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~----~~~~~~~~~ 248 (827)
+.-.+. ....++|||+.++.++.+ .++.+|+..
T Consensus 147 -----------------------------------------l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~ 183 (582)
T 3o4h_A 147 -----------------------------------------LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLS 183 (582)
T ss_dssp -----------------------------------------EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETT
T ss_pred -----------------------------------------eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCC
Confidence 000111 346689999999977765 567788765
Q ss_pred ccc--eecCCCCcEE-EEEcCCCCEEEEEecCC--eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEE--------E
Q 003356 249 KID--KELGSGDAVC-ASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA--------W 315 (827)
Q Consensus 249 ~~~--~~~~h~~~v~-va~sp~~~lla~g~~dg--~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~--------~ 315 (827)
+++ .+.+|...+. ++|||||+.||++..+| +|++||+++ ++.. .+.. |...+..++ |
T Consensus 184 ~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~--------~~~~~~~~~~~~~~~~~~ 253 (582)
T 3o4h_A 184 SGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLEL--------PSKDFSSYRPTAITWLGY 253 (582)
T ss_dssp TCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCC--------SCSHHHHHCCSEEEEEEE
T ss_pred CCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccC--------CCcChhhhhhccccceeE
Confidence 443 3366777666 99999999999888899 899999987 5544 4444 666677777 9
Q ss_pred CCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 316 TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 316 spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
||||+.+++++.|+++++|++ +++..+. ...+.+++|+ ++
T Consensus 254 spdg~~~~~~~~~g~~~l~~~--g~~~~~~----~~~v~~~~~s-dg 293 (582)
T 3o4h_A 254 LPDGRLAVVARREGRSAVFID--GERVEAP----QGNHGRVVLW-RG 293 (582)
T ss_dssp CTTSCEEEEEEETTEEEEEET--TEEECCC----SSEEEEEEEE-TT
T ss_pred cCCCcEEEEEEcCCcEEEEEE--CCeeccC----CCceEEEEec-CC
Confidence 999999999999999999999 5544322 2457778887 65
No 141
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.64 E-value=1.8e-14 Score=168.43 Aligned_cols=186 Identities=11% Similarity=-0.018 Sum_probs=120.0
Q ss_pred EEEeCCc-EEEEeeccCccccceeecccee--cCCCCcEEEEEcCCCCEEEEEecC----CeEEEEEcCCCCcceEEEEe
Q 003356 225 VLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRR----GVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 225 ~~s~dG~-~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~va~sp~~~lla~g~~d----g~v~vw~~~~~~~~~~~l~~ 297 (827)
.+++||+ +++++..+....+|+..+++.. ..+.. ..++|||||++||+++.| ++|++||+.+ ++ .+.+..
T Consensus 116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~-~~~l~~ 192 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GG-LRVFDS 192 (582)
T ss_dssp EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CC-CEEECC
T ss_pred eeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CC-ceEeec
Confidence 4677775 3333344444558887665432 22222 458999999999988887 7899999876 44 345555
Q ss_pred ecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC--cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeeccee
Q 003356 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSM 375 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg--~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i 375 (827)
|.+.+..++|||||+.||++..|+ .|++||+.+++.. .+.++ ...+.+++ ..+...
T Consensus 193 --------~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~------------~~~~~~ 250 (582)
T 3o4h_A 193 --------GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP-SKDFSSYR------------PTAITW 250 (582)
T ss_dssp --------SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS-CSHHHHHC------------CSEEEE
T ss_pred --------CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC-CcChhhhh------------hccccc
Confidence 888899999999999999888888 8999999988766 55444 33333333 000011
Q ss_pred EEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcE
Q 003356 376 MQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (827)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I 455 (827)
..|++++ + .+++++.++++++|.+ +.. .. .....+
T Consensus 251 ~~~spdg-~-------------------~~~~~~~~g~~~l~~~--g~~--------------------~~---~~~~~v 285 (582)
T 3o4h_A 251 LGYLPDG-R-------------------LAVVARREGRSAVFID--GER--------------------VE---APQGNH 285 (582)
T ss_dssp EEECTTS-C-------------------EEEEEEETTEEEEEET--TEE--------------------EC---CCSSEE
T ss_pred eeEcCCC-c-------------------EEEEEEcCCcEEEEEE--CCe--------------------ec---cCCCce
Confidence 2244333 2 2234455666667765 211 01 122458
Q ss_pred EEEEEcCCCCEEEEEeCCceE--EEEcC
Q 003356 456 QHVAASKDGMFLAVAGLHGLI--LYDIR 481 (827)
Q Consensus 456 ~~va~SpdG~~lavag~dg~i--iwd~~ 481 (827)
.+++|| ||+.+++++.+... +|...
T Consensus 286 ~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 286 GRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred EEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 899999 99999998888664 55543
No 142
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.64 E-value=4.5e-15 Score=166.59 Aligned_cols=208 Identities=13% Similarity=0.120 Sum_probs=133.5
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEcCCCC------cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEE----EEEcCCc
Q 003356 261 CASIAPEQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA----VGWKSRG 330 (827)
Q Consensus 261 ~va~sp~~~lla~g~~dg~v~vw~~~~~~------~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~La----sg~~Dg~ 330 (827)
++++++++.++|+|+.|| +++|+..... .....+..........+.+.|.+++|+|||++|| +|+.|++
T Consensus 41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~ 119 (434)
T 2oit_A 41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSI 119 (434)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEE
T ss_pred EEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCce
Confidence 399999999999999988 8898764200 0000000000000112677899999999999999 7888999
Q ss_pred EEEEeccCC--------ee---EEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEE
Q 003356 331 LTVWSVSGC--------RL---MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIF 399 (827)
Q Consensus 331 v~vWs~~~~--------~l---~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~ 399 (827)
|++||+.++ +. +..+.+| ...|.+++|+|++
T Consensus 120 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~------------------------------------- 161 (434)
T 2oit_A 120 IAFFDVRTFSNEAKQQKRPFAYHKLLKDA-GGMVIDMKWNPTV------------------------------------- 161 (434)
T ss_dssp EEEEEHHHHHCTTCSSCCCSEEEECCCSG-GGSEEEEEECSSC-------------------------------------
T ss_pred EEEEEccccccCCcCCcceeeeeeccCCC-CCceEEEEECCCC-------------------------------------
Confidence 999998654 11 1222222 2334444444331
Q ss_pred ecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EE
Q 003356 400 SFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (827)
Q Consensus 400 ~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iw 478 (827)
++.+++++.|+++++|++..+.. .....+|...|++++|||+|++||+|+.||.+ +|
T Consensus 162 --~~~las~s~Dg~v~iwD~~~~~~--------------------~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iw 219 (434)
T 2oit_A 162 --PSMVAVCLADGSIAVLQVTETVK--------------------VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219 (434)
T ss_dssp --TTEEEEEETTSCEEEEEESSSEE--------------------EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred --CCEEEEEECCCeEEEEEcCCCcc--------------------eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEE
Confidence 23567788899999998755421 22344577889999999999999999999999 99
Q ss_pred EcCCCeEEeeCCcc---ceEEEEEEEEEEeCCEEEEEEEeeCC----CcEEEEEeeCC
Q 003356 479 DIRQKKWRVFGDIT---QEQKIQSKGLLWLGKIIVVCNYIDSS----NTYELLFYPRY 529 (827)
Q Consensus 479 d~~t~~w~~f~~~~---~e~~~~v~gl~W~~~~li~~~~~~~~----~~~~lrly~~~ 529 (827)
|++...-+.+.... .++...|.++.|.++..+++++...+ ....+++|...
T Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 220 LPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp CTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred ccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence 99833333332111 12234688999987655444344332 23458888765
No 143
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.63 E-value=6.7e-14 Score=151.81 Aligned_cols=242 Identities=16% Similarity=0.170 Sum_probs=147.8
Q ss_pred EEEEeCCcEEEEeec--cCccccceeeccc--ee---cCCCC-cEEEEEcCCCCEEEEEe-cCCeEEEEEcCCCCcce--
Q 003356 224 FVLYSNGQLMSCSVS--KKGLKLAEFIKID--KE---LGSGD-AVCASIAPEQQILAVGT-RRGVVELYDLAESASLI-- 292 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~--~~~~~~~~~~~~~--~~---~~h~~-~v~va~sp~~~lla~g~-~dg~v~vw~~~~~~~~~-- 292 (827)
++++|||++++++.. ++.+.+|+...++ .+ ..+.. +..++|+|+|++|++++ .+++|++|++...+...
T Consensus 45 ~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~ 124 (347)
T 3hfq_A 45 LALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLT 124 (347)
T ss_dssp EEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred EEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeec
Confidence 567889985555443 5678888875433 11 22333 34499999999888888 68999999997523322
Q ss_pred EEEEeecCC-CCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc-CCeeEE--EeccccccceeeeeecCCCCCCccc
Q 003356 293 RTVSLYDWG-YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMS--TIRQISLSSISSPIVKPNQDCKYEP 368 (827)
Q Consensus 293 ~~l~~~~~~-~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~-~~~l~~--tl~~~~~~~v~s~~~sp~~~~~~~~ 368 (827)
..+.....+ ....+...+.+++|+|||++++++..++.|++|++. ++++.. .+..........++|+|++ ..
T Consensus 125 ~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg----~~ 200 (347)
T 3hfq_A 125 DTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG----QY 200 (347)
T ss_dssp EEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS----SE
T ss_pred ceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC----CE
Confidence 222110000 000123358899999999977777778899999998 554332 2222212356779999998 63
Q ss_pred e-eec---ceeEEEccC--CceEE--EEecCCc------ceE--EEEec-ceee-eecccCCCeeeeEEEEcCCeEEEEe
Q 003356 369 L-MSG---TSMMQWDEY--GYRLY--AIEEGSS------ERV--LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQ 430 (827)
Q Consensus 369 l-~sg---~~i~~W~~~--~~~l~--~~~~~~~------~~v--~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~ 430 (827)
+ +++ ..+.+|+.. ++++. ....... ..+ .+|++ ++.+ ++...++.+.+|++..... +
T Consensus 201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~-~---- 275 (347)
T 3hfq_A 201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH-L---- 275 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC-E----
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc-E----
Confidence 3 322 267778765 35542 2222111 123 55666 6655 5555677888888642211 0
Q ss_pred cCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCC-ceE-EE--EcCCCeEE
Q 003356 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH-GLI-LY--DIRQKKWR 486 (827)
Q Consensus 431 ~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~d-g~i-iw--d~~t~~w~ 486 (827)
+....+..+...++.++|||||++|++++.+ +.+ +| |..+|+.+
T Consensus 276 ------------~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 276 ------------TLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp ------------EEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ------------EEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 0112233344457899999999999999875 788 99 55667654
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.63 E-value=3.9e-14 Score=152.52 Aligned_cols=233 Identities=14% Similarity=0.136 Sum_probs=147.9
Q ss_pred EEEEeCCcEEEEeecc-Cccccceee--ccc--e---ecCCCCcEEEEEcCCCCEEEEEec-CCeEEEEEcCCCCc---c
Q 003356 224 FVLYSNGQLMSCSVSK-KGLKLAEFI--KID--K---ELGSGDAVCASIAPEQQILAVGTR-RGVVELYDLAESAS---L 291 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~-~~~~~~~~~--~~~--~---~~~h~~~v~va~sp~~~lla~g~~-dg~v~vw~~~~~~~---~ 291 (827)
+.++|||+.++++..+ +.+.+|+.. .++ . ...+.....++|+|+++++++++. ++.|.+|++.+ +. .
T Consensus 43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~ 121 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED-GLPVGV 121 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET-TEEEEE
T ss_pred EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCC-Cccccc
Confidence 4577888866666654 677788765 222 1 122334445999999998876665 88999999953 32 2
Q ss_pred eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE-cCCcEEEEeccC-CeeEE----EeccccccceeeeeecCCCCCC
Q 003356 292 IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSG-CRLMS----TIRQISLSSISSPIVKPNQDCK 365 (827)
Q Consensus 292 ~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~-~Dg~v~vWs~~~-~~l~~----tl~~~~~~~v~s~~~sp~~~~~ 365 (827)
...+. ....+.+++|+|||+.|++++ .|+.|++|++.+ +++.. .+..+....+..++|+|++
T Consensus 122 ~~~~~---------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg--- 189 (343)
T 1ri6_A 122 VDVVE---------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE--- 189 (343)
T ss_dssp EEEEC---------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS---
T ss_pred ccccc---------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC---
Confidence 22322 234589999999999888887 889999999987 54432 2222223457789999998
Q ss_pred ccce-eec---ceeEEEccCC--ceE--EEEec---CC---cceE--EEEec-ceeee-ecccCCCeeeeEEEEcCCeEE
Q 003356 366 YEPL-MSG---TSMMQWDEYG--YRL--YAIEE---GS---SERV--LIFSF-GKCCL-NRGVSGMTYARQVIYGEDRLL 427 (827)
Q Consensus 366 ~~~l-~sg---~~i~~W~~~~--~~l--~~~~~---~~---~~~v--~~~~~-~~~~~-s~~~d~~~~~w~~~~~~~~~~ 427 (827)
..+ +++ ..+.+|+... +++ ..... .. ...+ .++++ ++.++ +...++.+.+|++.......
T Consensus 190 -~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~- 267 (343)
T 1ri6_A 190 -QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL- 267 (343)
T ss_dssp -SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE-
T ss_pred -CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce-
Confidence 544 333 2788998843 332 22221 11 1122 55666 55554 55678888888875211110
Q ss_pred EEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEe-CCceE-EE--EcCCCeEEe
Q 003356 428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LY--DIRQKKWRV 487 (827)
Q Consensus 428 ~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag-~dg~i-iw--d~~t~~w~~ 487 (827)
. ....+..+. .+..++|+|||++|++++ .++.+ +| |..+++++.
T Consensus 268 ------------~---~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 315 (343)
T 1ri6_A 268 ------------S---KEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHE 315 (343)
T ss_dssp ------------E---EEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred ------------E---EeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeE
Confidence 0 011122222 378899999999999998 57888 99 555777654
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.62 E-value=5.2e-14 Score=168.33 Aligned_cols=314 Identities=10% Similarity=-0.003 Sum_probs=169.1
Q ss_pred ceEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEe---
Q 003356 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI--- 98 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~--- 98 (827)
...++|||| +.++...++++.+|+.. .+.... ... ..+.+.+++|||||+.||.+ .++.|.+|++..
T Consensus 84 v~~~~~spd-~~~~~~~~~~i~~~d~~-~~~~~~-l~~------~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 84 SFRTLDAGR-GLVVLFTQGGLVGFDML-ARKVTY-LFD------TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGE 153 (706)
T ss_dssp CEEEEETTT-TEEEEEETTEEEEEETT-TTEEEE-EEC------CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTS
T ss_pred ceeEEECCC-CeEEEEECCEEEEEECC-CCceEE-ccC------CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccc
Confidence 345789999 55555677999999995 443322 211 12456789999999999995 689999999976
Q ss_pred --cCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCC-c---EEEEecCCccCcceeeccc
Q 003356 99 --TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG-S---LYSISWKGEFYGAFELVHS 172 (827)
Q Consensus 99 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg-~---i~~~~w~~~~~~~~~l~~~ 172 (827)
+............ ....+. ..++. .....-.++++|++.|+.++.|. . ................. .
T Consensus 154 ~~g~~~~~~~~~~~~--~~~g~~-~~~ee----~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~-y 225 (706)
T 2z3z_A 154 GMSRAIAVTIDGTET--LVYGQA-VHQRE----FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLY-Y 225 (706)
T ss_dssp CCCCCEESCSCCBTT--EEESSC-CGGGC----TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEEC-C
T ss_pred cCCCcEEeccCCCCC--eEcccc-hhhhh----cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEee-C
Confidence 4322211111100 000000 00000 00112236788999988887331 1 11111110000000000 0
Q ss_pred CCCCcccceecccCCCCc-cccccCCceecccc-CCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccC-----ccccc
Q 003356 173 SNDSSVAALSHHFPSNGL-ASVDTSGAFVSDHK-FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK-----GLKLA 245 (827)
Q Consensus 173 p~~~~~i~~~~~s~~~~~-~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~-----~~~~~ 245 (827)
|..... ..+..+ .+....+....... ..+...+.+ +.++|||+.++++..+. ++.+|
T Consensus 226 ~~~g~~------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~----------~~~spdg~~l~~~~~~~~~~~~~v~~~ 289 (706)
T 2z3z_A 226 PMAGTP------SHHVTVGIYHLATGKTVYLQTGEPKEKFLTN----------LSWSPDENILYVAEVNRAQNECKVNAY 289 (706)
T ss_dssp CBTTSC------CCEEEEEEEETTTTEEEECCCCSCTTCEEEE----------EEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred CCCCCC------CCeeEEEEEECCCCceEeeccCCCCceeEee----------EEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence 000000 000000 00000000000000 012233444 44677777666655443 56677
Q ss_pred eeecccee---c--CCCC---cEE-EEEcC--CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEE-E
Q 003356 246 EFIKIDKE---L--GSGD---AVC-ASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC-I 313 (827)
Q Consensus 246 ~~~~~~~~---~--~h~~---~v~-va~sp--~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~-l 313 (827)
+..+++.. . .+.. .+. ++|+| ||++++++..||.++||.++..++.++.+.. |...|.+ +
T Consensus 290 d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--------~~~~v~~~~ 361 (706)
T 2z3z_A 290 DAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--------GEWEVTNFA 361 (706)
T ss_dssp ETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--------SSSCEEEEE
T ss_pred ECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--------CCeEEEeee
Confidence 76554111 1 1111 123 79999 9999999999999999998743565666655 6777877 8
Q ss_pred EECCCCCEEEEEEcC-C----cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc-------eeEEEccC
Q 003356 314 AWTPDNSAFAVGWKS-R----GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEY 381 (827)
Q Consensus 314 ~~spDg~~Lasg~~D-g----~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-------~i~~W~~~ 381 (827)
+|+|||+.|+.++.+ + .|..|+..++. ...+. + ...+.+++|+|++ ..++... .+.+|+..
T Consensus 362 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~-~~~~~~~~~spdg----~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 362 GFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-P-ESGMHRTQLSPDG----SAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-C-SSSEEEEEECTTS----SEEEEEEECSSCSCEEEEEESS
T ss_pred EEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-C-CCceEEEEECCCC----CEEEEEecCCCCCcEEEEEECC
Confidence 999999987766554 3 56666766665 33333 2 3458899999998 6554332 47889988
Q ss_pred Cce
Q 003356 382 GYR 384 (827)
Q Consensus 382 ~~~ 384 (827)
+++
T Consensus 435 ~~~ 437 (706)
T 2z3z_A 435 KGS 437 (706)
T ss_dssp SCE
T ss_pred CCe
Confidence 776
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.61 E-value=4.3e-14 Score=148.25 Aligned_cols=227 Identities=13% Similarity=0.022 Sum_probs=147.4
Q ss_pred ceEEEEEecceEEEEEccCeEEEeecCCc-eeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEe--cCcEEEEEEEEe
Q 003356 22 QQIIYFKVNNGLLLIASPCHIELWSSSQH-KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT--SSLYLHIFKVQI 98 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~~~~v~IW~~~~~-~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t--~dg~l~l~~v~~ 98 (827)
...++|||||++|+++.++.|.+|+.. . +..... ... ...+.+.+++|+|||++|++++ .++...+|.+..
T Consensus 44 v~~~~~spdg~~l~~~~~~~i~~~d~~-~~~~~~~~-~~~----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNSEGLLYRLSLA-GDPSPEKV-DTG----FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp CEEEEECTTSSEEEEEETTEEEEEESS-SCCSCEEC-CCT----TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred eEeeEECCCCCEEEEEcCCeEEEEeCC-CCCCceEe-ccc----cccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 445789999999999999999999995 4 332211 110 1125567899999999999999 446778887764
Q ss_pred cCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEE-EEecCCcEEEEecCCccCcceeecccCCCCc
Q 003356 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML-LGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (827)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~ll-v~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~ 177 (827)
....... +. ........+++++++.++ ++..++.+.+|.++........
T Consensus 118 ~~~~~~~----------------~~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~--------- 167 (297)
T 2ojh_A 118 TGGTPRL----------------MT-----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR--------- 167 (297)
T ss_dssp TCCCCEE----------------CC-----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE---------
T ss_pred CCCceEE----------------ee-----cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE---------
Confidence 3211000 00 000112236778888877 5667888888766533221110
Q ss_pred ccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEee-ccCccccceee-ccc---e
Q 003356 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFI-KID---K 252 (827)
Q Consensus 178 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~~~~~~~~~~~-~~~---~ 252 (827)
+......+..+. ++|||+.++++. .++.+++|... ... .
T Consensus 168 --------------------------~~~~~~~~~~~~----------~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~ 211 (297)
T 2ojh_A 168 --------------------------LTHGEGRNDGPD----------YSPDGRWIYFNSSRTGQMQIWRVRVDGSSVER 211 (297)
T ss_dssp --------------------------CCCSSSCEEEEE----------ECTTSSEEEEEECTTSSCEEEEEETTSSCEEE
T ss_pred --------------------------cccCCCccccce----------ECCCCCEEEEEecCCCCccEEEECCCCCCcEE
Confidence 111223344444 667777666555 36677777764 221 2
Q ss_pred ecCCCCcEE-EEEcCCCCEEEEEecC-----------CeEEEEEcCCCCcceE--EEEeecCCCCCCCCCCeEEEEECCC
Q 003356 253 ELGSGDAVC-ASIAPEQQILAVGTRR-----------GVVELYDLAESASLIR--TVSLYDWGYSMDDTGPVSCIAWTPD 318 (827)
Q Consensus 253 ~~~h~~~v~-va~sp~~~lla~g~~d-----------g~v~vw~~~~~~~~~~--~l~~~~~~~~~~h~~~V~~l~~spD 318 (827)
+..|...+. ++|+|++++|++++.+ +.|.+||+.+ ++... .+.. |.+.+.+++|+||
T Consensus 212 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~--------~~~~~~~~~~spd 282 (297)
T 2ojh_A 212 ITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG-GNVETLFDLFG--------GQGTMNSPNWSPD 282 (297)
T ss_dssp CCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS-CSCEEEEEEEE--------STTTSCSCCBCTT
T ss_pred EecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC-CCceeeeccCC--------CCcccccceECCC
Confidence 245555565 9999999999998876 5699999987 54433 3335 7889999999999
Q ss_pred CCEEEEEEcCC
Q 003356 319 NSAFAVGWKSR 329 (827)
Q Consensus 319 g~~Lasg~~Dg 329 (827)
|+.|++++.|.
T Consensus 283 g~~l~~~~~~~ 293 (297)
T 2ojh_A 283 GDEFAYVRYFP 293 (297)
T ss_dssp SSEEEEEEECC
T ss_pred CCEEEEEEecc
Confidence 99999887764
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.61 E-value=4.1e-13 Score=145.58 Aligned_cols=285 Identities=8% Similarity=0.003 Sum_probs=156.9
Q ss_pred cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEec---CcEEEEEEEEecCceeecCCCCCCCcee
Q 003356 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFF 115 (827)
Q Consensus 39 ~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~---dg~l~l~~v~~~~~~~~~~~~~~~~~~~ 115 (827)
+..+.+|..+.....+..... ....+....++|||||+ |++++. ++.|.+|++..+.... +
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~----~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~-----------~ 78 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGL----LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHK-----------L 78 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEE----EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEE-----------E
T ss_pred CCCEEEEEEcCCCCeEEEeee----eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEE-----------e
Confidence 356888877522222222111 11234556799999999 666654 6899999995332110 0
Q ss_pred eeEeeEeecccccccccceEEEeecCCCeEEEEe-cCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccc
Q 003356 116 IKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (827)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t-~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~ 194 (827)
..+ . .......-.+++++++.++++. .++.+.+|+.+....... +.........
T Consensus 79 ~~~----~----~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~-----------~~~~~~~~~~------ 133 (347)
T 3hfq_A 79 NTV----V----APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL-----------TDTVQHSGHG------ 133 (347)
T ss_dssp EEE----E----EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE-----------EEEEECCCCC------
T ss_pred eee----e----cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee-----------cceeecCCCC------
Confidence 000 0 0111222346788999898888 678898877653211111 0000000000
Q ss_pred cCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceee-cccee------cCCC-CcEEEEEcC
Q 003356 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI-KIDKE------LGSG-DAVCASIAP 266 (827)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~-~~~~~------~~h~-~~v~va~sp 266 (827)
.........+.. ++++|||+++++...++.+.+|+.. .++.. .... .+..++|+|
T Consensus 134 -------p~~~~~~~~~~~----------~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 134 -------PRPEQDGSHIHY----------TDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP 196 (347)
T ss_dssp -------SSTTCSSCCEEE----------EEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred -------CCccccCCCceE----------EEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence 000011122333 4477888866555556677788766 22111 1112 334499999
Q ss_pred CCCEEEE-EecCCeEEEEEcCCCCcceEEE-EeecCCCCCCCCCCeEEEEECCCCCEE-EEEEcCCcEEEEecc-CC--e
Q 003356 267 EQQILAV-GTRRGVVELYDLAESASLIRTV-SLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLTVWSVS-GC--R 340 (827)
Q Consensus 267 ~~~lla~-g~~dg~v~vw~~~~~~~~~~~l-~~~~~~~~~~h~~~V~~l~~spDg~~L-asg~~Dg~v~vWs~~-~~--~ 340 (827)
||+++++ +..++.|++|+++......... .....+........+..++|+|||++| +++..++.|.+|++. ++ .
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~ 276 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT 276 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE
Confidence 9996655 5678899999987522222211 111111111112458899999999977 555668999999986 22 3
Q ss_pred eEEEeccccccceeeeeecCCCCCCccceeecc----eeEEE--ccCCceEE
Q 003356 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQW--DEYGYRLY 386 (827)
Q Consensus 341 l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~i~~W--~~~~~~l~ 386 (827)
.+..+..+ ...+..++|+|++ ..++.+. .+.+| +..++++.
T Consensus 277 ~~~~~~~~-~~~~~~~~~spdg----~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 277 LIQQISTE-GDFPRDFDLDPTE----AFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEECS-SSCCCEEEECTTS----SEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EeEEEecC-CCCcCeEEECCCC----CEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 44455443 2346788999998 6544332 56677 55555554
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.3e-14 Score=173.95 Aligned_cols=327 Identities=9% Similarity=0.040 Sum_probs=181.7
Q ss_pred cEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec
Q 003356 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS 150 (827)
Q Consensus 71 ~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~ 150 (827)
.+++|+|||++++. +.+|.|++|++..+....... .. ........-.++++|++.|+.++.
T Consensus 19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~-----------------~~-~~~~~~~~~~~~SpDg~~la~~~~ 79 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILS-----------------NR-TMKSVNASNYGLSPDRQFVYLESD 79 (719)
T ss_dssp CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEEC-----------------HH-HHHTTTCSEEEECTTSSEEEEEEE
T ss_pred CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEc-----------------cc-cccccceeeEEECCCCCeEEEEec
Confidence 47899999975554 469999999987554321111 00 000001223467899999998876
Q ss_pred ---------CCcEEEEecCCccCcc-eeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCc
Q 003356 151 ---------DGSLYSISWKGEFYGA-FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM 220 (827)
Q Consensus 151 ---------dg~i~~~~w~~~~~~~-~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 220 (827)
++.+++++.++..... .. + ...+..
T Consensus 80 ~~~~~~~s~~~~i~~~d~~~g~~~~~~~-----------------------------------l---~~~~~~------- 114 (719)
T 1z68_A 80 YSKLWRYSYTATYYIYDLSNGEFVRGNE-----------------------------------L---PRPIQY------- 114 (719)
T ss_dssp EEECSSSCEEEEEEEEETTTTEECCSSC-----------------------------------C---CSSBCC-------
T ss_pred CceeEEeecceEEEEEECCCCcccccee-----------------------------------c---Cccccc-------
Confidence 5666664433221100 00 0 001222
Q ss_pred ceEEEEEeCCcEEEEeeccCccccceeecccee----cCCCC--------c----------EEEEEcCCCCEEEEEecCC
Q 003356 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGD--------A----------VCASIAPEQQILAVGTRRG 278 (827)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~----~~h~~--------~----------v~va~sp~~~lla~g~~dg 278 (827)
+.++|||+.++.+. ++++++|+...++.. .++.. . ..++|||||+.||+++.|.
T Consensus 115 ---~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~ 190 (719)
T 1z68_A 115 ---LCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND 190 (719)
T ss_dssp ---EEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC
T ss_pred ---ceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECC
Confidence 44777787776654 456777776544321 12211 1 2489999999999998763
Q ss_pred ----------------------------------eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEE
Q 003356 279 ----------------------------------VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (827)
Q Consensus 279 ----------------------------------~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Las 324 (827)
+|++||+.+ ++....+.........+|.+.+.+++|||||+++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~ 269 (719)
T 1z68_A 191 TDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQ 269 (719)
T ss_dssp TTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEE
T ss_pred CCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcceEEEeEEeCCCeEEEE
Confidence 788999876 443211111000000137888999999999988777
Q ss_pred EEcCC----cEEEEe----ccCCeeEEEec---ccccccee-----eeeecCCCCCCccceee--c----c-eeEEEccC
Q 003356 325 GWKSR----GLTVWS----VSGCRLMSTIR---QISLSSIS-----SPIVKPNQDCKYEPLMS--G----T-SMMQWDEY 381 (827)
Q Consensus 325 g~~Dg----~v~vWs----~~~~~l~~tl~---~~~~~~v~-----s~~~sp~~~~~~~~l~s--g----~-~i~~W~~~ 381 (827)
....+ .|.+|| +.++++...+. ..+...+. .++|+|++ ..++. . . .+..|+..
T Consensus 270 ~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~g~~~l~~~~~~ 345 (719)
T 1z68_A 270 WLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA----ISYYKIFSDKDGYKHIHYIKDT 345 (719)
T ss_dssp EEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS----SCEEEEEECTTSCEEEEEESSC
T ss_pred EeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC----CeEEEEEEccCCceEEEEEECC
Confidence 54332 388899 77776554442 22244455 78999998 53321 1 1 56777877
Q ss_pred CceEEEEecCCcceEEEEe--cceeee-eccc----CCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCc
Q 003356 382 GYRLYAIEEGSSERVLIFS--FGKCCL-NRGV----SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (827)
Q Consensus 382 ~~~l~~~~~~~~~~v~~~~--~~~~~~-s~~~----d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~ 454 (827)
+++.. .+..+...+.... -++.++ +++. ++..++|.+....... . ...+...+.+|...
T Consensus 346 ~~~~~-~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~-----------~--~~~l~~~~~~~~~~ 411 (719)
T 1z68_A 346 VENAI-QITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPP-----------S--KKCVTCHLRKERCQ 411 (719)
T ss_dssp STTCE-ECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSC-----------C--EEESSTTTTTTTBC
T ss_pred CCceE-ecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCC-----------C--ceeccCccCCCCCc
Confidence 66532 2222232232111 333333 3333 3666777665311100 0 00011112235566
Q ss_pred EEEEEEcCCCCEEEEEe-CC--ceE-EEEcCCCe
Q 003356 455 VQHVAASKDGMFLAVAG-LH--GLI-LYDIRQKK 484 (827)
Q Consensus 455 I~~va~SpdG~~lavag-~d--g~i-iwd~~t~~ 484 (827)
+..++|||||++++..+ .. ..+ +||+.+++
T Consensus 412 ~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 412 YYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp BEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred eEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 78899999999888643 32 345 88887776
No 149
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.61 E-value=2.8e-13 Score=145.54 Aligned_cols=270 Identities=12% Similarity=0.125 Sum_probs=156.3
Q ss_pred EEEecce-EEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEec-CcEEEEEEEEecCce
Q 003356 26 YFKVNNG-LLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS-SLYLHIFKVQITEKS 102 (827)
Q Consensus 26 ~fspdg~-lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~-dg~l~l~~v~~~~~~ 102 (827)
.|+++++ ++++. .+++|.+||.. .+..+....- ..... .++|+|||+.+++++. ++.|.+||+..+...
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~------~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTD-TLEILNQITL------GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK 75 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETT-TCCEEEEEEC------CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCc-ccceeeeEEc------cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence 3666654 46666 57899999984 5554443321 12233 9999999998877766 889999998644310
Q ss_pred eecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCC---cEEEEecCCccCcceeecccCCCCccc
Q 003356 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG---SLYSISWKGEFYGAFELVHSSNDSSVA 179 (827)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg---~i~~~~w~~~~~~~~~l~~~p~~~~~i 179 (827)
...+ .. ......-.+++++++.++++..++ .+.+|+.+.. ...
T Consensus 76 ------------~~~~----~~----~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~--~~~------------ 121 (331)
T 3u4y_A 76 ------------VVAI----QE----GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN--KFI------------ 121 (331)
T ss_dssp ------------EEEE----EE----CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT--EEE------------
T ss_pred ------------EEec----cc----CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC--CeE------------
Confidence 0000 00 011111136778888888554443 7777554321 111
Q ss_pred ceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCc-EEEEeeccCc-cccceeecc-------
Q 003356 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKG-LKLAEFIKI------- 250 (827)
Q Consensus 180 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~~~~-~~~~~~~~~------- 250 (827)
..+ ........ ++++|||+ ++++...+.. +.+|+....
T Consensus 122 ~~~-----------------------~~~~~~~~----------~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~ 168 (331)
T 3u4y_A 122 STI-----------------------PIPYDAVG----------IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG 168 (331)
T ss_dssp EEE-----------------------ECCTTEEE----------EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred EEE-----------------------ECCCCccc----------eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence 000 00111223 45778886 4444445566 777765321
Q ss_pred -ceecCCCCcEEEEEcCCCCEEEE-EecCCeEEEEEcCCCCcc---eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEE
Q 003356 251 -DKELGSGDAVCASIAPEQQILAV-GTRRGVVELYDLAESASL---IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (827)
Q Consensus 251 -~~~~~h~~~v~va~sp~~~lla~-g~~dg~v~vw~~~~~~~~---~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg 325 (827)
........+..++|+|+|+++++ +..+++|++||+.+ ++. +..+.. ...+..++|+|||++|+++
T Consensus 169 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~~---------~~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 169 QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN-PENITLLNAVGT---------NNLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-TTSCEEEEEEEC---------SSCCCCEEECTTSSEEEEE
T ss_pred CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC-CcccceeeeccC---------CCCCceEEECCCCCEEEEE
Confidence 11122233445999999996554 55689999999987 666 555543 3567889999999977665
Q ss_pred E-cCCcEEEEeccCCee--EEEeccc----c--ccceeeeeecCCCCCCcccee-ecc---eeEEEccCCce
Q 003356 326 W-KSRGLTVWSVSGCRL--MSTIRQI----S--LSSISSPIVKPNQDCKYEPLM-SGT---SMMQWDEYGYR 384 (827)
Q Consensus 326 ~-~Dg~v~vWs~~~~~l--~~tl~~~----~--~~~v~s~~~sp~~~~~~~~l~-sg~---~i~~W~~~~~~ 384 (827)
. .++.|.+||..++++ +.++..+ . ......++|+|++ ..+. ++. .+.+|+..+..
T Consensus 239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTE----TKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTS----SEEEEEETTTTEEEEEETTSCE
T ss_pred EcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCC----CEEEEecCCCCcEEEEEecCCc
Confidence 4 578899999998876 3333221 0 0112346777776 4432 221 56667765543
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.60 E-value=1.5e-13 Score=148.75 Aligned_cols=260 Identities=8% Similarity=0.021 Sum_probs=161.9
Q ss_pred EEEEEecceEEEEEc--------cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEec-CcEEEEE
Q 003356 24 IIYFKVNNGLLLIAS--------PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS-SLYLHIF 94 (827)
Q Consensus 24 vv~fspdg~lla~~~--------~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~-dg~l~l~ 94 (827)
-++|||||+.+.+++ +++|.+||.. .+..+..... .+....++|+|||+.++++.. ++.|.+|
T Consensus 45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~~~-------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPV-TLEVTQAIHN-------DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EEEEETTTTEEEEEECCCTTTEESEEEEEECTT-TCCEEEEEEE-------SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC-CCeEEEEEec-------CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 378999998776665 5589999984 5555544432 233568999999997777654 6899999
Q ss_pred EEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec--CCcEEEEecCCccCcceeeccc
Q 003356 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHS 172 (827)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~--dg~i~~~~w~~~~~~~~~l~~~ 172 (827)
|+..+............ ..... ......-.+++++++.++++.. ++.+.+++.+ ......
T Consensus 117 d~~~~~~~~~~~~~~~~---------~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~--~~~~~~---- 178 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRK---------RTEEV---RPLQPRELVADDATNTVYISGIGKESVIWVVDGG--NIKLKT---- 178 (353)
T ss_dssp ETTTCCEEEEEESCCCC---------CCSSC---CCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT--TTEEEE----
T ss_pred eCCCCeeEEEEecCCCc---------ccccc---CCCCCceEEECCCCCEEEEEecCCCceEEEEcCC--CCceEE----
Confidence 98644321111100000 00000 0000112356778888888873 6677765433 221110
Q ss_pred CCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce
Q 003356 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK 252 (827)
Q Consensus 173 p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~ 252 (827)
.++ .....+.. +.+++||+.++++..++.+.+|+..+.+.
T Consensus 179 --------~~~----------------------~~~~~~~~----------~~~s~dg~~l~~~~~~~~i~~~d~~~~~~ 218 (353)
T 3vgz_A 179 --------AIQ----------------------NTGKMSTG----------LALDSEGKRLYTTNADGELITIDTADNKI 218 (353)
T ss_dssp --------EEC----------------------CCCTTCCC----------CEEETTTTEEEEECTTSEEEEEETTTTEE
T ss_pred --------Eec----------------------CCCCccce----------EEECCCCCEEEEEcCCCeEEEEECCCCeE
Confidence 000 00001111 34677887777766677777777655433
Q ss_pred e----c---CCCCcEE-EEEcCCCCEEEEEecC-CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEE
Q 003356 253 E----L---GSGDAVC-ASIAPEQQILAVGTRR-GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (827)
Q Consensus 253 ~----~---~h~~~v~-va~sp~~~lla~g~~d-g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~La 323 (827)
. . ++..... ++|+|+++.+++++.+ +.|.+||..+ ++.+..+.. .. -..++|+|||+.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~--------~~--~~~~~~s~dg~~l~ 287 (353)
T 3vgz_A 219 LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN-GNILAKVAA--------PE--SLAVLFNPARNEAY 287 (353)
T ss_dssp EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT-CCEEEEEEC--------SS--CCCEEEETTTTEEE
T ss_pred EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEc--------CC--CceEEECCCCCEEE
Confidence 2 1 2344444 9999999977776654 8999999987 676666654 22 25699999999665
Q ss_pred EEE-cCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 324 VGW-KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 324 sg~-~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
++. .++.|.+||..+++....+... ....+++|+|++
T Consensus 288 v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg 325 (353)
T 3vgz_A 288 VTHRQAGKVSVIDAKSYKVVKTFDTP--THPNSLALSADG 325 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECC--SEEEEEEECTTS
T ss_pred EEECCCCeEEEEECCCCeEEEEEecC--CCCCeEEEcCCC
Confidence 555 6899999999999888777653 356777888776
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.59 E-value=2.6e-14 Score=171.44 Aligned_cols=236 Identities=15% Similarity=0.039 Sum_probs=148.5
Q ss_pred EEEEeCCcEEEEeecc---------Cccccceeeccce--e---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCC
Q 003356 224 FVLYSNGQLMSCSVSK---------KGLKLAEFIKIDK--E---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES 288 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~---------~~~~~~~~~~~~~--~---~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~ 288 (827)
+.++|||+.++++..+ .++.+|+..+++. + .+|...+. ++|||||+.||+++. ++|++|++.+
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~- 143 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG- 143 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS-
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC-
Confidence 4588899988887764 3455888766543 2 23333355 999999999999886 7999999987
Q ss_pred CcceEEEEeecCCC-CCCC---------CCCeEEEEECCCCCEEEEEEcCC-----------------------------
Q 003356 289 ASLIRTVSLYDWGY-SMDD---------TGPVSCIAWTPDNSAFAVGWKSR----------------------------- 329 (827)
Q Consensus 289 ~~~~~~l~~~~~~~-~~~h---------~~~V~~l~~spDg~~Lasg~~Dg----------------------------- 329 (827)
++..+......... ..++ .+.+.+++|||||+.||+++.|+
T Consensus 144 g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 223 (723)
T 1xfd_A 144 KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGS 223 (723)
T ss_dssp SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTS
T ss_pred CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCC
Confidence 55554433300000 0000 11348899999999999988653
Q ss_pred -----cEEEEeccCCeeEEEeccc-----cccceeeeeecCCCCCCccceeec-------ceeEEEccCCceEEEEecCC
Q 003356 330 -----GLTVWSVSGCRLMSTIRQI-----SLSSISSPIVKPNQDCKYEPLMSG-------TSMMQWDEYGYRLYAIEEGS 392 (827)
Q Consensus 330 -----~v~vWs~~~~~l~~tl~~~-----~~~~v~s~~~sp~~~~~~~~l~sg-------~~i~~W~~~~~~l~~~~~~~ 392 (827)
.|++||+.+++....+..+ +...+.+++|+||+ +.++.. ..+.+|+..++++......+
T Consensus 224 ~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg----~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 224 ENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST----KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp CCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS----EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC----eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 7999999988765566543 14568899999998 665433 26788999888766554321
Q ss_pred -cce------EEEEec-ceeeee--cccCC----CeeeeEEE--EcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEE
Q 003356 393 -SER------VLIFSF-GKCCLN--RGVSG----MTYARQVI--YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (827)
Q Consensus 393 -~~~------v~~~~~-~~~~~s--~~~d~----~~~~w~~~--~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~ 456 (827)
... -..|++ ++.++. ...++ ..++|.+. .+... ..+..+..+.+.+.
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----------------~~~~~l~~~~~~~~ 362 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-----------------DNIQSITSGDWDVT 362 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-----------------CCCCBSCCSSSCEE
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-----------------cceeEeecCCeEEE
Confidence 111 235555 665553 33444 33333332 11110 00122333455666
Q ss_pred E-EEEcCCCCEEEEEeCC---ceE-EEEcCC
Q 003356 457 H-VAASKDGMFLAVAGLH---GLI-LYDIRQ 482 (827)
Q Consensus 457 ~-va~SpdG~~lavag~d---g~i-iwd~~t 482 (827)
. ++|||||++|+.++.+ +.+ +|++..
T Consensus 363 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 363 KILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred eeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 5 6999999999876655 667 999864
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.58 E-value=2.3e-12 Score=140.47 Aligned_cols=282 Identities=12% Similarity=0.090 Sum_probs=156.9
Q ss_pred cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecC----cEEEEEEEEecCceeecCCCCCCCce
Q 003356 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHIFKVQITEKSIQIGGKQPSGLF 114 (827)
Q Consensus 39 ~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~d----g~l~l~~v~~~~~~~~~~~~~~~~~~ 114 (827)
+..|.+|..+.....+..... . +.+....++|||||++|++++.+ |.+.+|++.........
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~----~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~--------- 91 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSD----A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL--------- 91 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEE----E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE---------
T ss_pred CCCEEEEEEeCCCCCEEEeec----c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE---------
Confidence 457999977421111211111 1 22344679999999999999885 79999999753211100
Q ss_pred eeeEeeEeecccccccccceEEEeecCCCeEEEEe-cCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCcccc
Q 003356 115 FIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASV 193 (827)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t-~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~ 193 (827)
+. . ..........++.+++.++++. .++.+.+|+.+....... + .....+ .+..
T Consensus 92 ~~--------~--~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~-~---------~~~~~~-~g~~---- 146 (361)
T 3scy_A 92 LN--------T--QKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLP-A---------SDVIEF-KGSG---- 146 (361)
T ss_dssp EE--------E--EECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCS-C---------SEEEEC-CCCC----
T ss_pred ee--------E--eccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcc-c---------ceeEEc-cCCC----
Confidence 00 0 0001112334444788888877 467888876653211100 0 000000 0000
Q ss_pred ccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEe-eccCccccceeeccc---------------e-ecCC
Q 003356 194 DTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCS-VSKKGLKLAEFIKID---------------K-ELGS 256 (827)
Q Consensus 194 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~-~~~~~~~~~~~~~~~---------------~-~~~h 256 (827)
..........+.. ++++|||+.++++ ..++.+.+|+..... . ...+
T Consensus 147 -------~~~~~~~~~~~~~----------~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (361)
T 3scy_A 147 -------PDKERQTMPHLHC----------VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP 209 (361)
T ss_dssp -------SCTTTCSSCCEEE----------EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred -------CCccccCCCcceE----------EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence 0000111222333 4477888744443 345667777654221 1 1222
Q ss_pred C-CcEEEEEcCCCCEEEEEe-cCCeEEEEEcCCCCcce--EEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC--Cc
Q 003356 257 G-DAVCASIAPEQQILAVGT-RRGVVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS--RG 330 (827)
Q Consensus 257 ~-~~v~va~sp~~~lla~g~-~dg~v~vw~~~~~~~~~--~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D--g~ 330 (827)
. .+..++|+|+|+++++++ .+++|.+|++.+ +... ..+.. ...+......++|+|||++|+++..+ +.
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~-----~~~~~~~~~~i~~spdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAA-----DTVNAQGSGDIHLSPDGKYLYASNRLKADG 283 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEES-----CSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEec-----CCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence 3 334499999999888777 689999999986 4332 22222 11234457899999999998777654 89
Q ss_pred EEEEecc--CCe--eEEEeccccccceeeeeecCCCCCCccceeecc----eeEE--EccCCceEEEE
Q 003356 331 LTVWSVS--GCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQ--WDEYGYRLYAI 388 (827)
Q Consensus 331 v~vWs~~--~~~--l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~i~~--W~~~~~~l~~~ 388 (827)
|.+|++. ++. .+..+.. ...+..++|+|++ ..++.+. .+.+ |+..++++...
T Consensus 284 i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg----~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNG----KYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTS----CEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCC----CEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 9999995 444 3333332 2356788999998 6554332 4555 56666766544
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.57 E-value=2.1e-13 Score=146.36 Aligned_cols=220 Identities=14% Similarity=0.113 Sum_probs=144.3
Q ss_pred EEEEeCCcEE-EEeeccCccccceeecccee----cCC----C-CcEEEEEcCCCCEEEEEe------------cCCeEE
Q 003356 224 FVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE----LGS----G-DAVCASIAPEQQILAVGT------------RRGVVE 281 (827)
Q Consensus 224 ~~~s~dG~~~-~~~~~~~~~~~~~~~~~~~~----~~h----~-~~v~va~sp~~~lla~g~------------~dg~v~ 281 (827)
+.+++||+.+ ++...++.+.+|+..+++.. .++ . ....++|+|+|+.++++. .++.|.
T Consensus 39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~ 118 (337)
T 1pby_B 39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118 (337)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred eEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEE
Confidence 4477888644 44444567778876654432 121 1 233489999999999886 579999
Q ss_pred EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCC
Q 003356 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (827)
Q Consensus 282 vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (827)
+||+.+ ++....+.. ...+.+++|+|||+.|+++ ++.|.+||+.+++....+..+.. .....++|+
T Consensus 119 v~d~~~-~~~~~~~~~---------~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~s~d 184 (337)
T 1pby_B 119 LYDAET-LSRRKAFEA---------PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW--EAETYAQPD 184 (337)
T ss_dssp EEETTT-TEEEEEEEC---------CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT--TTTTBCCCB
T ss_pred EEECCC-CcEEEEEeC---------CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc--CCCceeCCC
Confidence 999987 666655543 3457889999999988888 68999999999988877765421 123467777
Q ss_pred CCCCccceeecc---------------------------eeEEEccCCceEEE-EecCCcceE--EEEec-ceeeeeccc
Q 003356 362 QDCKYEPLMSGT---------------------------SMMQWDEYGYRLYA-IEEGSSERV--LIFSF-GKCCLNRGV 410 (827)
Q Consensus 362 ~~~~~~~l~sg~---------------------------~i~~W~~~~~~l~~-~~~~~~~~v--~~~~~-~~~~~s~~~ 410 (827)
+ ..+.... .+..|+..++++.. ....+...+ +++++ ++.++++
T Consensus 185 g----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-- 258 (337)
T 1pby_B 185 V----LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-- 258 (337)
T ss_dssp C----CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--
T ss_pred c----cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--
Confidence 6 3221111 35788888877641 122233334 45555 5555555
Q ss_pred CCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
++.+.+|++..+.. ...+. ....+.+++|+|||+++++++.++.+ +||+.+++
T Consensus 259 ~~~v~~~d~~~~~~--------------------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 259 YNVLESFDLEKNAS--------------------IKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ESEEEEEETTTTEE--------------------EEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCeEEEEECCCCcC--------------------cceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 56677666422111 11111 12346789999999999999999999 99998875
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.56 E-value=4.9e-13 Score=160.81 Aligned_cols=79 Identities=4% Similarity=-0.009 Sum_probs=49.7
Q ss_pred CCCCeEEEEECCCCCEEEEEEc----CCcEEEEeccCCe----eE--EEe--cccccccee-----eeeecCCCCCCccc
Q 003356 306 DTGPVSCIAWTPDNSAFAVGWK----SRGLTVWSVSGCR----LM--STI--RQISLSSIS-----SPIVKPNQDCKYEP 368 (827)
Q Consensus 306 h~~~V~~l~~spDg~~Lasg~~----Dg~v~vWs~~~~~----l~--~tl--~~~~~~~v~-----s~~~sp~~~~~~~~ 368 (827)
|...+..++|||||+.++.... +..|.+||+.+++ +. .++ .++ ...+. +++|+||+ ..
T Consensus 258 ~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fspDG----~~ 332 (740)
T 4a5s_A 258 GDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFTLDG----NS 332 (740)
T ss_dssp SCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEECTTS----SE
T ss_pred CCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-CceEccCcCCCceEcCCC----CE
Confidence 6677999999999997766543 2369999998876 21 222 222 33333 78899998 54
Q ss_pred ee-ecc------eeEEEccCCceEEEEe
Q 003356 369 LM-SGT------SMMQWDEYGYRLYAIE 389 (827)
Q Consensus 369 l~-sg~------~i~~W~~~~~~l~~~~ 389 (827)
++ ..+ .+..|+..+++.....
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~~~lT 360 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDCTFIT 360 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred EEEEEEcCCCceEEEEEECCCCceEecc
Confidence 33 221 5566776665544433
No 155
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.56 E-value=7.5e-13 Score=143.29 Aligned_cols=217 Identities=8% Similarity=0.015 Sum_probs=149.6
Q ss_pred EEEEeCCcE-EEEeeccCccccceeecccee---cCCC-C---------cEEEEEcCCCCEEEEEe--cCCeEEEEEcCC
Q 003356 224 FVLYSNGQL-MSCSVSKKGLKLAEFIKIDKE---LGSG-D---------AVCASIAPEQQILAVGT--RRGVVELYDLAE 287 (827)
Q Consensus 224 ~~~s~dG~~-~~~~~~~~~~~~~~~~~~~~~---~~h~-~---------~v~va~sp~~~lla~g~--~dg~v~vw~~~~ 287 (827)
+.+++||+. +++...++.+.+|+..+++.. ..+. . +..++|+|+++.+++++ .++.|.+||..+
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 457788884 444444677778887655432 1111 1 23499999999888776 478999999987
Q ss_pred CCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccc---cccceeeeeecCCCCC
Q 003356 288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI---SLSSISSPIVKPNQDC 364 (827)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~---~~~~v~s~~~sp~~~~ 364 (827)
++.+..+.. +...+.+++|+|||+.|+++..++.+.+||..+++....+... ....+..++++|++
T Consensus 174 -~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-- 242 (353)
T 3vgz_A 174 -IKLKTAIQN--------TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR-- 242 (353)
T ss_dssp -TEEEEEECC--------CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT--
T ss_pred -CceEEEecC--------CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC--
Confidence 666666653 4455788999999999999999999999999999888776542 13356778999998
Q ss_pred Ccccee-ec---ceeEEEccCCceEEEEecCCcceEEEEec-ce-eeeecccCCCeeeeEEEEcCCeEEEEecCCCCcce
Q 003356 365 KYEPLM-SG---TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (827)
Q Consensus 365 ~~~~l~-sg---~~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~ 438 (827)
..+. +. ..+.+|+..+++...........-..+++ ++ .+++...++.+.+|+...+..
T Consensus 243 --~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-------------- 306 (353)
T 3vgz_A 243 --QRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV-------------- 306 (353)
T ss_dssp --TEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE--------------
T ss_pred --CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeE--------------
Confidence 5433 22 27889999888877666543333366666 55 344555677777776422211
Q ss_pred EEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCc
Q 003356 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (827)
Q Consensus 439 w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg 474 (827)
...+. ....+..++|+|||+++++++.++
T Consensus 307 ------~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 307 ------VKTFD-TPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp ------EEEEE-CCSEEEEEEECTTSCEEEEEEECC
T ss_pred ------EEEEe-cCCCCCeEEEcCCCCEEEEEEccc
Confidence 11111 123578999999999999988775
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.53 E-value=3e-12 Score=139.65 Aligned_cols=260 Identities=10% Similarity=0.076 Sum_probs=144.5
Q ss_pred EEEEEecceEEEEEcc-----CeEEEeecCCceeEEEEEEeChHhhhhcC-cccEEEEcCCccEEEEEe-cCcEEEEEEE
Q 003356 24 IIYFKVNNGLLLIASP-----CHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVT-SSLYLHIFKV 96 (827)
Q Consensus 24 vv~fspdg~lla~~~~-----~~v~IW~~~~~~~~l~~~~r~~~s~~~~G-~~~~v~wSPDg~~lav~t-~dg~l~l~~v 96 (827)
-++|||||++|++++. +++.+|+++.....+....+. ...| ....+++ ||++|+++. .++.+.+|++
T Consensus 54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~----~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ----KTMGADPCYLTT--NGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE----ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEB
T ss_pred eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe----ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEe
Confidence 3789999998887755 589999985221222222111 1112 2345666 999888877 5789999998
Q ss_pred EecCceeecCCCCCCCceeeeEeeEeec--ccccc--cccceEEEeecCCCeEEEEec-CCcEEEEecCCccC----cce
Q 003356 97 QITEKSIQIGGKQPSGLFFIKISLVLNE--QLPFA--EKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFY----GAF 167 (827)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~--~~~~~v~~~~~d~~~llv~t~-dg~i~~~~w~~~~~----~~~ 167 (827)
.......... .. ..... ..... .....-.+++++++.++++.. ++.+.+|+++.... ...
T Consensus 128 ~~~g~~~~~~----------~~-~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l 196 (361)
T 3scy_A 128 GQDGALLPAS----------DV-IEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKF 196 (361)
T ss_dssp CTTSCBCSCS----------EE-EECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCC
T ss_pred CCCCcCcccc----------ee-EEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccce
Confidence 6432110000 00 00000 00000 001122467888888877664 77888887764432 000
Q ss_pred eecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEee-ccCccccce
Q 003356 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAE 246 (827)
Q Consensus 168 ~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~~~~~~~~~ 246 (827)
... . ... ............ ++++|||+.++++. .++++.+|+
T Consensus 197 ~~~----~--~~~---------------------~~~~~~~~~~~~----------~~~spdg~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 197 LTK----G--TPE---------------------AFKVAPGSGPRH----------LIFNSDGKFAYLINEIGGTVIAFR 239 (361)
T ss_dssp EEE----E--EEE---------------------EEECCTTCCEEE----------EEECTTSSEEEEEETTTCEEEEEE
T ss_pred eec----c--ccc---------------------ceecCCCCCCeE----------EEEcCCCCEEEEEcCCCCeEEEEE
Confidence 000 0 000 000011122333 45778887555554 466777887
Q ss_pred eeccce-----e---cCCCCcE-EEEEcCCCCEEEEEecC--CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEE
Q 003356 247 FIKIDK-----E---LGSGDAV-CASIAPEQQILAVGTRR--GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (827)
Q Consensus 247 ~~~~~~-----~---~~h~~~v-~va~sp~~~lla~g~~d--g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~ 315 (827)
...+.. . ..+.... .++|+|||++|+++..+ ++|.+|+++........+.... ....+.+++|
T Consensus 240 ~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~------~g~~~~~~~~ 313 (361)
T 3scy_A 240 YADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL------TGIHPRNFII 313 (361)
T ss_dssp EETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE------CSSCCCEEEE
T ss_pred ecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec------CCCCCceEEE
Confidence 654321 1 1222333 49999999988776655 8999999973122222222110 1345789999
Q ss_pred CCCCCEEEEEE-cCCcEEEEec--cCCeeEE
Q 003356 316 TPDNSAFAVGW-KSRGLTVWSV--SGCRLMS 343 (827)
Q Consensus 316 spDg~~Lasg~-~Dg~v~vWs~--~~~~l~~ 343 (827)
+|||++|+++. .++.|.+|.+ .++++..
T Consensus 314 spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 314 TPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp CTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 99999988887 6789999655 4665543
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.52 E-value=4.6e-13 Score=150.18 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=102.1
Q ss_pred CCCcEE-EEEcCCCCEEE----EEecCCeEEEEEcCCCC--------cceEEEEeecCCCCCCCCCCeEEEEECCC-CCE
Q 003356 256 SGDAVC-ASIAPEQQILA----VGTRRGVVELYDLAESA--------SLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSA 321 (827)
Q Consensus 256 h~~~v~-va~sp~~~lla----~g~~dg~v~vw~~~~~~--------~~~~~l~~~~~~~~~~h~~~V~~l~~spD-g~~ 321 (827)
+...+. ++|+|++++|| +|+.|++|++||+.+ . +.+..+.. ..+|.+.|.+++|+|+ +.+
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~-----~~~h~~~V~~v~~~p~~~~~ 164 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRT-FSNEAKQQKRPFAYHKL-----LKDAGGMVIDMKWNPTVPSM 164 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHH-HHCTTCSSCCCSEEEEC-----CCSGGGSEEEEEECSSCTTE
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccc-cccCCcCCcceeeeeec-----cCCCCCceEEEEECCCCCCE
Confidence 344566 99999999999 788899999999875 2 12222221 1238999999999998 899
Q ss_pred EEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCC------
Q 003356 322 FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS------ 392 (827)
Q Consensus 322 Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~------ 392 (827)
||+|+.||+|++||+.++.......+| ...+.+++|+|++ ..+++|+ ++.+|+.+ ++.......+
T Consensus 165 las~s~Dg~v~iwD~~~~~~~~~~~~~-~~~v~~v~wspdg----~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~ 238 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETVKVCATLPS-TVAVTSVCWSPKG----KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESD 238 (434)
T ss_dssp EEEEETTSCEEEEEESSSEEEEEEECG-GGCEEEEEECTTS----SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTT
T ss_pred EEEEECCCeEEEEEcCCCcceeeccCC-CCceeEEEEcCCC----CEEEEEcCCCcEEEEccC-CcccccccCCcccCCC
Confidence 999999999999999988766655555 5689999999998 8888876 89999998 4444443322
Q ss_pred -cceEEEEec
Q 003356 393 -SERVLIFSF 401 (827)
Q Consensus 393 -~~~v~~~~~ 401 (827)
...+..+.+
T Consensus 239 ~~~~v~~v~w 248 (434)
T 2oit_A 239 HPVRVLDVLW 248 (434)
T ss_dssp SCEEEEEEEE
T ss_pred CceeEEEEEE
Confidence 236666666
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.50 E-value=4e-13 Score=145.08 Aligned_cols=156 Identities=12% Similarity=0.056 Sum_probs=109.9
Q ss_pred EEeCCcEEEEeeccCccccceeecccee---cCCC--CcEEEEEcCCCCEEE-EEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSG--DAVCASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~--~~v~va~sp~~~lla-~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
+.+++++++++..++++.+|+..+++.. ..+. ....++|+|+++.++ ++..++.|.+||+.+ ++....+....
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~~~~ 85 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANLSS 85 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEESCC
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEEccc
Confidence 5677888888888888888987665432 2223 345599999998654 555789999999987 66666555310
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEEcC------------CcEEEEeccCCee---EEEeccccccceeeeeecCCCCC
Q 003356 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKS------------RGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDC 364 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~spDg~~Lasg~~D------------g~v~vWs~~~~~l---~~tl~~~~~~~v~s~~~sp~~~~ 364 (827)
.+ ..+...+..++|+|||++|+++..+ +.|.+||+.+++. +..+... ..+.+++|+|++
T Consensus 86 ~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg-- 159 (349)
T 1jmx_B 86 VP--GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDG-- 159 (349)
T ss_dssp ST--TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTS--
T ss_pred cc--ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--CcccceeECCCC--
Confidence 00 0002237889999999999999865 8999999987443 3333332 357788899998
Q ss_pred CccceeecceeEEEccCCceEEEEec
Q 003356 365 KYEPLMSGTSMMQWDEYGYRLYAIEE 390 (827)
Q Consensus 365 ~~~~l~sg~~i~~W~~~~~~l~~~~~ 390 (827)
..++.+..+.+|+..+++......
T Consensus 160 --~l~~~~~~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 160 --SLYVAGPDIYKMDVKTGKYTVALP 183 (349)
T ss_dssp --CEEEESSSEEEECTTTCCEEEEEC
T ss_pred --cEEEccCcEEEEeCCCCceecccc
Confidence 655555589999998888766554
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.50 E-value=2.4e-12 Score=138.01 Aligned_cols=270 Identities=11% Similarity=0.012 Sum_probs=162.1
Q ss_pred cEEEEeeccCccccceeecccee----cCCC--CcEEEEEcCCCCEE-EEEecCCeEEEEEcCCCCcceEEEEeecCCCC
Q 003356 231 QLMSCSVSKKGLKLAEFIKIDKE----LGSG--DAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (827)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~----~~h~--~~v~va~sp~~~ll-a~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~ 303 (827)
++++++..++++.+|+..+.+.. .++. .+..++|+|+++.+ +++..++.|.+||+.+ ++.+..+.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~--- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTP--- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCCc---
Confidence 34555666667777776554332 2222 23449999999765 4556678999999987 666665553100
Q ss_pred CCCCCCeEEEEECCCCCEEEEEE------------cCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCcccee-
Q 003356 304 MDDTGPVSCIAWTPDNSAFAVGW------------KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM- 370 (827)
Q Consensus 304 ~~h~~~V~~l~~spDg~~Lasg~------------~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~- 370 (827)
..|...+.+++|+|||+.|+++. .++.|.+||+.+++....+... ..+.+++|+|++ ..++
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~ 151 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDG----SKLYG 151 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTS----SCEEE
T ss_pred ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCC----CEEEE
Confidence 00122577899999999998886 5799999999998887776542 347788999998 5443
Q ss_pred ecceeEEEccCCceEEEEecCCc-ceEEEEec-ceeeeecccCCCee--eeEEEEcCC----------eEEEEecCCCCc
Q 003356 371 SGTSMMQWDEYGYRLYAIEEGSS-ERVLIFSF-GKCCLNRGVSGMTY--ARQVIYGED----------RLLVVQSEDTDE 436 (827)
Q Consensus 371 sg~~i~~W~~~~~~l~~~~~~~~-~~v~~~~~-~~~~~s~~~d~~~~--~w~~~~~~~----------~~~~~~~~d~~~ 436 (827)
+...+.+|+..++++......+. ..-..+++ ++.+...+..+... .+....... .+.++.......
T Consensus 152 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 152 LGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp ESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred eCCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 34488999999988876654332 11123344 44333332222211 111111111 222222211110
Q ss_pred ceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEe-eCCccceEEEEEEEEEEeC--CEEEEE
Q 003356 437 LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV-FGDITQEQKIQSKGLLWLG--KIIVVC 512 (827)
Q Consensus 437 ~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~-f~~~~~e~~~~v~gl~W~~--~~li~~ 512 (827)
. . ..+..+...+..++|+|||++++++ ++.+ +||+.+++... +.. ...+.++.|.. +.++++
T Consensus 232 ~---~----~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~ 297 (337)
T 1pby_B 232 A---M----REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-----PHSYYSVNVSTDGSTVWLG 297 (337)
T ss_dssp E---E----EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-----SSCCCEEEECTTSCEEEEE
T ss_pred e---E----eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-----CCceeeEEECCCCCEEEEE
Confidence 0 0 1122344567889999999999998 6788 99999886421 111 01244678864 455554
Q ss_pred EEeeCCCcEEEEEeeCC
Q 003356 513 NYIDSSNTYELLFYPRY 529 (827)
Q Consensus 513 ~~~~~~~~~~lrly~~~ 529 (827)
.....|++|...
T Consensus 298 -----~~~~~i~v~d~~ 309 (337)
T 1pby_B 298 -----GALGDLAAYDAE 309 (337)
T ss_dssp -----SBSSEEEEEETT
T ss_pred -----cCCCcEEEEECc
Confidence 123578888764
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.49 E-value=1.3e-12 Score=141.09 Aligned_cols=279 Identities=11% Similarity=0.091 Sum_probs=153.2
Q ss_pred EEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEe-cCcEEEEEEEEecCce
Q 003356 25 IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKS 102 (827)
Q Consensus 25 v~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t-~dg~l~l~~v~~~~~~ 102 (827)
++++++++++++. .+++|.+||.. .+..+..+... ..+....++|+|||+.++++. .++.|.+|++..+...
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~-----~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVA-SDTVYKSCVMP-----DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETT-TTEEEEEEECS-----SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECC-CCcEEEEEecC-----CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 3578889988887 57899999994 55554443211 111356899999999776654 6789999997543211
Q ss_pred eecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecC------------CcEEEEecCCccCcceeec
Q 003356 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD------------GSLYSISWKGEFYGAFELV 170 (827)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~d------------g~i~~~~w~~~~~~~~~l~ 170 (827)
.......... ..+....-.+++++++.++++..+ +.+.+++......... +.
T Consensus 79 ~~~~~~~~~~---------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~ 142 (349)
T 1jmx_B 79 FHANLSSVPG---------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP-VR 142 (349)
T ss_dssp EEEESCCSTT---------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC-SE
T ss_pred EEEEcccccc---------------cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce-ee
Confidence 1110000000 001111223677889999998865 7887765543211110 00
Q ss_pred ccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCC------------------------cceEEEE
Q 003356 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP------------------------MRLLFVL 226 (827)
Q Consensus 171 ~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~------------------------~~~~~~~ 226 (827)
..+.. ..+..+.+++++.+.. .... ...+.......+..+..... .-..+.+
T Consensus 143 ~~~~~-~~~~~~~~s~dg~l~~-~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T 1jmx_B 143 TFPMP-RQVYLMRAADDGSLYV-AGPD--IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 218 (349)
T ss_dssp EEECC-SSCCCEEECTTSCEEE-ESSS--EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred eccCC-CcccceeECCCCcEEE-ccCc--EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence 01111 1233333555554322 1111 11111111222222221110 0001222
Q ss_pred EeCCc----------EEE-EeeccCccccceeeccceecCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEcCCCCcceE
Q 003356 227 YSNGQ----------LMS-CSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIR 293 (827)
Q Consensus 227 s~dG~----------~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~-va~sp-~~~lla~g~~dg~v~vw~~~~~~~~~~ 293 (827)
++|+. .++ .....+.++.++... +..... ++++| ++++++++ ++.|.+||+.+ ++.+.
T Consensus 219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~-~~~~~ 289 (349)
T 1jmx_B 219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ-RKLIK 289 (349)
T ss_dssp C-------CCCEEEEEEEEEETTTCCEEEEEEEE------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT-TEEEE
T ss_pred cCCCcCCccccccceeEEEEeccCCcEEeccccc------CCCcceeeEecCCCCCEEEEE--cCeEEEEECcc-CeEEE
Confidence 22221 111 111223333333211 223334 89999 99999988 88999999987 66666
Q ss_pred EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
.+.. ...+.+++|+|||+.|++++.++.|++||+.+++.+.++..
T Consensus 290 ~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 290 AANL---------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EEEC---------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EEcC---------CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 6653 33467999999999999888899999999999988777653
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.46 E-value=5.6e-12 Score=137.97 Aligned_cols=237 Identities=8% Similarity=0.039 Sum_probs=143.7
Q ss_pred EEEEEeCCcEEEEeeccCccccceee-cccee-----cCCCCcEEEEEcCCCCE--EEEEe-------------cCCeEE
Q 003356 223 LFVLYSNGQLMSCSVSKKGLKLAEFI-KIDKE-----LGSGDAVCASIAPEQQI--LAVGT-------------RRGVVE 281 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~~~~~~~~~~-~~~~~-----~~h~~~v~va~sp~~~l--la~g~-------------~dg~v~ 281 (827)
.+++++||+.++++..+ ++.+|+.. +++.. ..+....+++|+|+|+. ++++. .+|++.
T Consensus 44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~ 122 (365)
T 1jof_A 44 WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN 122 (365)
T ss_dssp EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEE
Confidence 35678889877766665 78888875 43321 11122334899999994 55553 689999
Q ss_pred EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc-CCcEEEEecc-CCeeE--EEeccc-cccceeee
Q 003356 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS-GCRLM--STIRQI-SLSSISSP 356 (827)
Q Consensus 282 vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~-Dg~v~vWs~~-~~~l~--~tl~~~-~~~~v~s~ 356 (827)
+|+++..++....+.... ..+...+.+++|+|||++|+++.. ++.|++|++. ++++. ..+... +......+
T Consensus 123 v~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~ 198 (365)
T 1jof_A 123 VFSVSETGKLEKNVQNYE----YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV 198 (365)
T ss_dssp EEEECTTCCEEEEEEEEE----CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred EEccCCCCcCcceEeeEE----eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence 999975355444443211 014567899999999998887764 6799999997 66543 333311 12457889
Q ss_pred eecCCCCCCccceeec----ceeEEEcc--CCceEEE---E---ec----CCcc------eE--EE-Eec-ceeeeeccc
Q 003356 357 IVKPNQDCKYEPLMSG----TSMMQWDE--YGYRLYA---I---EE----GSSE------RV--LI-FSF-GKCCLNRGV 410 (827)
Q Consensus 357 ~~sp~~~~~~~~l~sg----~~i~~W~~--~~~~l~~---~---~~----~~~~------~v--~~-~~~-~~~~~s~~~ 410 (827)
+|+|++ +.+... ..+.+|+. .++++.. . .. ++.. .+ .+ +++ ++.+++++.
T Consensus 199 ~~spdg----~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 199 AMHPTG----NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EECTTS----SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred EECCCC----CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 999998 554332 25666654 3555421 1 11 1121 23 45 666 776655543
Q ss_pred CC------CeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcC---CCCEEEEEeCC-ceE-EEE
Q 003356 411 SG------MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK---DGMFLAVAGLH-GLI-LYD 479 (827)
Q Consensus 411 d~------~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~Sp---dG~~lavag~d-g~i-iwd 479 (827)
+. ++.+|++..... +. . +......+....+.++||| ||++|++++.+ +.+ +|+
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~-~~------------~---~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGS-IE------------K---QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSC-EE------------E---EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred CCCCCCCCeEEEEEECCCCC-EE------------E---eeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence 22 677777642111 10 0 0000111223346789999 89999999875 788 999
Q ss_pred cCCCe
Q 003356 480 IRQKK 484 (827)
Q Consensus 480 ~~t~~ 484 (827)
+..+.
T Consensus 339 ~~~~~ 343 (365)
T 1jof_A 339 WKDEF 343 (365)
T ss_dssp EETTE
T ss_pred Echhh
Confidence 87763
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.43 E-value=2e-11 Score=133.29 Aligned_cols=273 Identities=12% Similarity=0.069 Sum_probs=155.1
Q ss_pred eEEEEEecceEEEEEc-----------cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEec--Cc
Q 003356 23 QIIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS--SL 89 (827)
Q Consensus 23 ~vv~fspdg~lla~~~-----------~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~--dg 89 (827)
+-++|||||+++.+++ +++|.+||.. ....+....-.......-.....++|||||++|+++.. ++
T Consensus 53 p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~-t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~ 131 (361)
T 2oiz_A 53 GHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD-KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT 131 (361)
T ss_dssp EEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT-TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE
T ss_pred CceEECCCCCEEEEEEecccccccCCCCCEEEEEECc-CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC
Confidence 4689999999887764 4579999984 66666655432211101123457999999999999874 68
Q ss_pred EEEEEEEEecCceeecCCCCCCCceeeeEeeEeecc-cccccccceEEEeecCC-CeEEEEecCCcEEEEecCCccCcce
Q 003356 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQ-LPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAF 167 (827)
Q Consensus 90 ~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~v~~~~~d~-~~llv~t~dg~i~~~~w~~~~~~~~ 167 (827)
.|.+||+...... .. +...+.. .+ .+.+++ ..+++.+.||.+..+.++.......
T Consensus 132 ~v~v~d~~~~~~~---------------------~~~i~~~~~~-~v-~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~ 188 (361)
T 2oiz_A 132 SIGIVDVAKGDYV---------------------EDVTAAAGCW-SV-IPQPNRPRSFMTICGDGGLLTINLGEDGKVAS 188 (361)
T ss_dssp EEEEEETTTTEEE---------------------EEEGGGTTEE-EE-EECTTSSSEEEEEETTSSEEEEEECTTSSEEE
T ss_pred eEEEEECCCCcEE---------------------EEEecCCCcc-ee-EEcCCCCeeEEEECCCCcEEEEEECCCCcEee
Confidence 9999998643210 01 1111110 11 234444 4566667788877766543211100
Q ss_pred eecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCcccc---
Q 003356 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL--- 244 (827)
Q Consensus 168 ~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~--- 244 (827)
... .. .-+..+.. .+ .+...+.....++.+.+|+++++.....++..
T Consensus 189 ~~~-------~~--~~~~~~~~--------------------~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~ 238 (361)
T 2oiz_A 189 QSR-------SK--QMFSVKDD--------------------PI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGP 238 (361)
T ss_dssp EEE-------CC--CCSCTTTS--------------------CB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEE
T ss_pred ecc-------cc--ceEcCCCC--------------------ce-EEEecccCCEEEEEeCCCeEEEEEecCCCceeccc
Confidence 000 00 00000000 00 00001111222334445554444332222221
Q ss_pred ceeecccee-cCC--CCcEEEEEcCCCCEEEEEec-----------CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCe
Q 003356 245 AEFIKIDKE-LGS--GDAVCASIAPEQQILAVGTR-----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV 310 (827)
Q Consensus 245 ~~~~~~~~~-~~h--~~~v~va~sp~~~lla~g~~-----------dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V 310 (827)
|........ .+. ...-.++|+|+++.+.++.. +++|.+||+.+ .+.+.++.. +. +
T Consensus 239 ~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~--------~~--p 307 (361)
T 2oiz_A 239 WSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPG--------RD--A 307 (361)
T ss_dssp EESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEEC--------TT--C
T ss_pred ccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEec--------CC--e
Confidence 111110000 000 11112689999888777654 35899999988 788888877 55 8
Q ss_pred EEEEECCCCCEEEEEEcCCcEEEEeccCC--eeEEEeccccccceeeeeecCCC
Q 003356 311 SCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 311 ~~l~~spDg~~Lasg~~Dg~v~vWs~~~~--~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
.+++|+|||++|++++. ++|.+||..++ +++.++...+ ..-..++++|++
T Consensus 308 ~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G-~~P~~~~~~p~G 359 (361)
T 2oiz_A 308 LSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAA-EASLQVQFHPVG 359 (361)
T ss_dssp CEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSC-SSEEEEEECCCS
T ss_pred eEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCC-CCcEEEEecCCC
Confidence 99999999999999887 99999999999 8888875543 235667888886
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.42 E-value=8.6e-12 Score=136.44 Aligned_cols=247 Identities=10% Similarity=0.011 Sum_probs=140.5
Q ss_pred EEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccE--EEEEe-------------cC
Q 003356 24 IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKL--IAVVT-------------SS 88 (827)
Q Consensus 24 vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~--lav~t-------------~d 88 (827)
-++|||||++|++++.++|.+|+.+..+........ ...|....++|+|||++ ++++. .+
T Consensus 44 ~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~-----~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 44 WMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASH-----PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp EEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEE-----ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred EEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEe-----ecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 488999999888776669999998312322211110 01244456899999995 44543 58
Q ss_pred cEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec-CCcEEEEecCCccCcce
Q 003356 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAF 167 (827)
Q Consensus 89 g~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~-dg~i~~~~w~~~~~~~~ 167 (827)
|.+.+|++...... ...+... ... ......-.++++|++.++++.. ++.|.+|+.+. .. ..
T Consensus 119 g~v~v~~~~~~g~~------------~~~~~~~-~~~---~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~-~g-~~ 180 (365)
T 1jof_A 119 GYGNVFSVSETGKL------------EKNVQNY-EYQ---ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA-SG-EV 180 (365)
T ss_dssp CEEEEEEECTTCCE------------EEEEEEE-ECC---TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-TS-CE
T ss_pred ceEEEEccCCCCcC------------cceEeeE-EeC---CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECC-CC-CE
Confidence 89999998632110 0000000 000 0111122356788888887654 56788876652 11 11
Q ss_pred eecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeec-cCccccce
Q 003356 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAE 246 (827)
Q Consensus 168 ~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-~~~~~~~~ 246 (827)
.. +.. .....+...+..+. ++|||+.++++.. ++++.+|+
T Consensus 181 ~~---------~~~--------------------~~~~~~g~~p~~~~----------~spdg~~l~v~~~~~~~v~v~~ 221 (365)
T 1jof_A 181 EL---------VGS--------------------VDAPDPGDHPRWVA----------MHPTGNYLYALMEAGNRICEYV 221 (365)
T ss_dssp EE---------EEE--------------------EECSSTTCCEEEEE----------ECTTSSEEEEEETTTTEEEEEE
T ss_pred EE---------eee--------------------EecCCCCCCCCEeE----------ECCCCCEEEEEECCCCeEEEEE
Confidence 00 000 00000122244444 6677765555443 45566654
Q ss_pred ee--ccc------ee-------cCCCC------cEE-EE-EcCCCCEEEEEecCC------eEEEEEcCCCCcceEE---
Q 003356 247 FI--KID------KE-------LGSGD------AVC-AS-IAPEQQILAVGTRRG------VVELYDLAESASLIRT--- 294 (827)
Q Consensus 247 ~~--~~~------~~-------~~h~~------~v~-va-~sp~~~lla~g~~dg------~v~vw~~~~~~~~~~~--- 294 (827)
.. +++ .. .+|.. ... ++ |+|||++|+++..+. +|.+|+++..++....
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~ 301 (365)
T 1jof_A 222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL 301 (365)
T ss_dssp ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE
T ss_pred EeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee
Confidence 32 111 01 12232 344 99 999999988776533 8999999742443332
Q ss_pred EEeecCCCCCCCCCCeEEEEECC---CCCEEEEEEcC-CcEEEEeccCCe
Q 003356 295 VSLYDWGYSMDDTGPVSCIAWTP---DNSAFAVGWKS-RGLTVWSVSGCR 340 (827)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~sp---Dg~~Lasg~~D-g~v~vWs~~~~~ 340 (827)
... +...+..++|+| ||++|+++..+ ++|++|++.+..
T Consensus 302 ~~~--------~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 302 SPT--------PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEC--------SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred eec--------CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 222 344567889999 89999999865 899999998764
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.41 E-value=8.6e-13 Score=158.13 Aligned_cols=232 Identities=9% Similarity=0.017 Sum_probs=141.5
Q ss_pred EEEEeCCcEEEEeec---------cCccccceeecccee--cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcc
Q 003356 224 FVLYSNGQLMSCSVS---------KKGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASL 291 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~---------~~~~~~~~~~~~~~~--~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~ 291 (827)
..++|||+.+++++. ++++++|+..+++.. ......+. ++|||||+.||++. |++|++|++.+ ++.
T Consensus 65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~-g~~ 142 (719)
T 1z68_A 65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG-DPP 142 (719)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTT-SCC
T ss_pred EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCC-CCc
Confidence 458889998887765 567888987766541 11123344 99999999999985 78999999987 444
Q ss_pred eEEE-EeecCCCCCCCC---------CCeEEEEECCCCCEEEEEEcCC--------------------------------
Q 003356 292 IRTV-SLYDWGYSMDDT---------GPVSCIAWTPDNSAFAVGWKSR-------------------------------- 329 (827)
Q Consensus 292 ~~~l-~~~~~~~~~~h~---------~~V~~l~~spDg~~Lasg~~Dg-------------------------------- 329 (827)
.+.. .+.......+|. +...+++|||||+.||+++.|.
T Consensus 143 ~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~ 222 (719)
T 1z68_A 143 FQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNP 222 (719)
T ss_dssp EECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCC
T ss_pred EEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCC
Confidence 3311 110000000121 1225899999999999988653
Q ss_pred --cEEEEeccCCeeE--EE------eccccccceeeeeecCCCCCCccceeecc-------eeEEEc----cCCceEEEE
Q 003356 330 --GLTVWSVSGCRLM--ST------IRQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWD----EYGYRLYAI 388 (827)
Q Consensus 330 --~v~vWs~~~~~l~--~t------l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-------~i~~W~----~~~~~l~~~ 388 (827)
.|++||+.++... .. +.++ ...+.+++|+||+ ..+++.. .+..|+ ..++++...
T Consensus 223 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~SpD~----~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 223 VVRIFIIDTTYPAYVGPQEVPVPAMIASS-DYYFSWLTWVTDE----RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp EEEEEEEESSCHHHHCCEECCCCHHHHTS-CEEEEEEEESSSS----EEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred eeEEEEEECCCCCccceeEccCCccCCCC-cceEEEeEEeCCC----eEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence 7889999887642 11 2233 4568899999997 5555422 377788 777665443
Q ss_pred e----cCCcceE-------EEEec-ceeee--ecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCc
Q 003356 389 E----EGSSERV-------LIFSF-GKCCL--NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (827)
Q Consensus 389 ~----~~~~~~v-------~~~~~-~~~~~--s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~ 454 (827)
. .++...+ ..|++ ++.++ +...++..++|.......+ +..+..+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-------------------~~~lt~~~~~ 358 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-------------------AIQITSGKWE 358 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-------------------CEECSCSSSC
T ss_pred EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-------------------eEecccCceE
Confidence 3 2333322 24444 44332 2334444333332111110 2334456777
Q ss_pred EEEEEEcCCCCEEEEEeCC-----ceE-EEEcCC
Q 003356 455 VQHVAASKDGMFLAVAGLH-----GLI-LYDIRQ 482 (827)
Q Consensus 455 I~~va~SpdG~~lavag~d-----g~i-iwd~~t 482 (827)
+..+.++ ||+.|+..+.+ +.. +|.+..
T Consensus 359 v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 359 AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 8888888 88888777765 667 888754
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.39 E-value=6.4e-12 Score=151.09 Aligned_cols=255 Identities=9% Similarity=0.103 Sum_probs=159.9
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC---------CcE
Q 003356 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---------RGL 331 (827)
Q Consensus 261 ~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D---------g~v 331 (827)
.++|+|||++++++ ||+|++||+.+ ++....+...... .+......++|||||+.||.++.+ +.+
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEY-GNSSVFLENSTFD---EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTT-CCEEEEECTTTTT---TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCC-CceEEEEechhhh---hhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 48999999999997 99999999988 6665555552110 112233458999999999999887 456
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--eeEEEccCCceEEEEec-CCcceE------------
Q 003356 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEE-GSSERV------------ 396 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~-~~~~~v------------ 396 (827)
.+||+.++++. .+..+ ...+..++||||+ +.++.+. .+.+|+..+++...... ++...+
T Consensus 95 ~~~d~~~~~~~-~l~~~-~~~~~~~~~SPdG----~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERI-PNNTQWVTWSPVG----HKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEETTTTEEC-CSSCC-CTTEEEEEECSST----TCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred EEEECCCCcEE-EcccC-CCcceeeEECCCC----CEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 69999998754 34444 4568999999999 6666544 88899988777554332 322222
Q ss_pred -------EEEec-ceeeeecccCCC-eeeeEEEEcCC-----------------------eEEEEecCC---CCcceEEE
Q 003356 397 -------LIFSF-GKCCLNRGVSGM-TYARQVIYGED-----------------------RLLVVQSED---TDELKILH 441 (827)
Q Consensus 397 -------~~~~~-~~~~~s~~~d~~-~~~w~~~~~~~-----------------------~~~~~~~~d---~~~~~w~~ 441 (827)
..+++ ++.++..+.|.+ +..|.+..... ++.++.-.. ........
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~ 248 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ 248 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence 55777 888888876665 77777653322 122222221 11112222
Q ss_pred eeeceeeccCCCcEEEEEEcCCCCEEEEEeCC----ceE-EEEcCCCe--EE--eeCC---ccceEEEE---EEEEEEeC
Q 003356 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLH----GLI-LYDIRQKK--WR--VFGD---ITQEQKIQ---SKGLLWLG 506 (827)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~SpdG~~lavag~d----g~i-iwd~~t~~--w~--~f~~---~~~e~~~~---v~gl~W~~ 506 (827)
+..|..+.+|...+..++|||||+.++....+ ..+ +||+.+|+ |. .... +.++.-+. .....|..
T Consensus 249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 22232233477779999999999977765443 367 99999986 22 1111 00110000 12467865
Q ss_pred C--EEE-EEEEeeCCCcEEEEEeeCC
Q 003356 507 K--IIV-VCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 507 ~--~li-~~~~~~~~~~~~lrly~~~ 529 (827)
| .++ .. .+.++...|.+|+..
T Consensus 329 DG~~l~~~~--s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 329 DGNSFYKII--SNEEGYRHICYFQID 352 (740)
T ss_dssp TSSEEEEEE--ECTTSCEEEEEEETT
T ss_pred CCCEEEEEE--EcCCCceEEEEEECC
Confidence 4 443 33 455677888888875
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.32 E-value=6.1e-10 Score=131.86 Aligned_cols=111 Identities=11% Similarity=0.055 Sum_probs=77.1
Q ss_pred EEEEeCCcEEEEeecc----------Cccccceeec------cce--ec-CCCCcEE-EEEcCCCCEEEEEecCC-----
Q 003356 224 FVLYSNGQLMSCSVSK----------KGLKLAEFIK------IDK--EL-GSGDAVC-ASIAPEQQILAVGTRRG----- 278 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~----------~~~~~~~~~~------~~~--~~-~h~~~v~-va~sp~~~lla~g~~dg----- 278 (827)
++++|||+.+++...+ .++.+|+... ++. +. .+...+. ++|||||+.||.++.++
T Consensus 135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~ 214 (662)
T 3azo_A 135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW 214 (662)
T ss_dssp EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTT
T ss_pred cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCC
Confidence 4578888877776655 3566777655 322 23 4445555 89999999999888653
Q ss_pred ---eEEEEEcCCCC---cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC--cEEEEeccCCeeE
Q 003356 279 ---VVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--GLTVWSVSGCRLM 342 (827)
Q Consensus 279 ---~v~vw~~~~~~---~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg--~v~vWs~~~~~l~ 342 (827)
.|.+|+++..+ ........ |.+.+..++|||||++++++..|+ .|.+|++.+++..
T Consensus 215 ~~~~i~~~d~~~~g~~~~~~~l~~~--------~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~ 278 (662)
T 3azo_A 215 EGTELKTARVTEDGRFADTRTLLGG--------PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT 278 (662)
T ss_dssp TCEEEEEEEECTTSCEEEEEEEEEE--------TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE
T ss_pred CCcEEEEEEECCCCcccccEEeCCC--------CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee
Confidence 79999998314 23333333 678899999999999888888888 4555565566543
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.30 E-value=1.3e-10 Score=127.53 Aligned_cols=147 Identities=10% Similarity=0.059 Sum_probs=99.7
Q ss_pred EEEeCCcEEEEeeccCccccceeecccee---cCCCCcEE---EEEcCCCCEEEEEe----------------------c
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC---ASIAPEQQILAVGT----------------------R 276 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~---va~sp~~~lla~g~----------------------~ 276 (827)
.++|||+.++....+..+.+|+...++.. ..+...+. ..++|++++++... .
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T 3pe7_A 87 FLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP 166 (388)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence 47889988888877777888887665432 23333332 34599999988532 3
Q ss_pred CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcC------CcEEEEeccCCeeEEEecccc
Q 003356 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS------RGLTVWSVSGCRLMSTIRQIS 349 (827)
Q Consensus 277 dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~D------g~v~vWs~~~~~l~~tl~~~~ 349 (827)
++.|.+||+.+ ++ .+.+.. +...+..++||| ||+.||....+ ..|.+++..++.. ..+..+.
T Consensus 167 ~~~l~~~d~~~-g~-~~~l~~--------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~ 235 (388)
T 3pe7_A 167 CCRLMRVDLKT-GE-STVILQ--------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHA 235 (388)
T ss_dssp CEEEEEEETTT-CC-EEEEEE--------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCC
T ss_pred cceEEEEECCC-Cc-eEEeec--------CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCC
Confidence 46899999887 44 334444 566789999999 99999887763 3678888777653 3333332
Q ss_pred c-cceeeeeecCCCCCCccceeecc--------eeEEEccCCceEE
Q 003356 350 L-SSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGYRLY 386 (827)
Q Consensus 350 ~-~~v~s~~~sp~~~~~~~~l~sg~--------~i~~W~~~~~~l~ 386 (827)
. ..+..++|+|++ ..++..+ .+..|+..+++..
T Consensus 236 ~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (388)
T 3pe7_A 236 EGESCTHEFWVPDG----SALVYVSYLKGSPDRFIYSADPETLENR 277 (388)
T ss_dssp TTEEEEEEEECTTS----SCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred CCcccccceECCCC----CEEEEEecCCCCCcceEEEEecCCCceE
Confidence 2 357788999998 6553321 2889999887643
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.28 E-value=5.1e-10 Score=122.82 Aligned_cols=277 Identities=13% Similarity=0.010 Sum_probs=151.4
Q ss_pred EEEcCCCCEEEEEec-CC--eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 262 ASIAPEQQILAVGTR-RG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 262 va~sp~~~lla~g~~-dg--~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
.+|||||+.||.++. +| .|.+||+.+ ++..+.... +...+..++|||||+.|+.+..++.+++|++.+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g~~~~lt~~--------~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT-QVATQLTEG--------RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT 111 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT-CEEEECCCS--------SCBCSSSCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCC-CceEEeeeC--------CCCCccceEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 579999999999887 67 477778776 544443333 555555778999999999999999999999998
Q ss_pred CeeEEEeccccccceeee--eecCCCCCCccceee-------------------------cceeEEEccCCceEEEEecC
Q 003356 339 CRLMSTIRQISLSSISSP--IVKPNQDCKYEPLMS-------------------------GTSMMQWDEYGYRLYAIEEG 391 (827)
Q Consensus 339 ~~l~~tl~~~~~~~v~s~--~~sp~~~~~~~~l~s-------------------------g~~i~~W~~~~~~l~~~~~~ 391 (827)
++.......+ ...+... .++|++ ..++. ...+..|+..+++.......
T Consensus 112 g~~~~~~~~~-~~~~~~~~~~~~~dg----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 186 (388)
T 3pe7_A 112 LEENVVYQVP-AEWVGYGTWVANSDC----TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE 186 (388)
T ss_dssp CCEEEEEECC-TTEEEEEEEEECTTS----SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE
T ss_pred Ccceeeeech-hhcccccceeECCCC----CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC
Confidence 8765544433 2223222 336666 33321 13677888887776544332
Q ss_pred CcceE--EEEec--ceeeeecccCC----CeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCC--CcEEEEEEc
Q 003356 392 SSERV--LIFSF--GKCCLNRGVSG----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN--WPVQHVAAS 461 (827)
Q Consensus 392 ~~~~v--~~~~~--~~~~~s~~~d~----~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~--~~I~~va~S 461 (827)
...+ ..+++ ++.++..+..+ ...+|.+...... +..+..+. ..+...+||
T Consensus 187 -~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------------------~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 187 -NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-------------------MRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp -SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-------------------CEESCCCCTTEEEEEEEEC
T ss_pred -CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-------------------eEEeeeCCCCcccccceEC
Confidence 2233 45555 45555443322 3344443221110 22233333 257789999
Q ss_pred CCCCEEEEEeC-Cc----eE-EEEcCCCeEEeeCCccceEEEE--EEEEEEeCC--EEEEEEEee----CCCcEEEEEee
Q 003356 462 KDGMFLAVAGL-HG----LI-LYDIRQKKWRVFGDITQEQKIQ--SKGLLWLGK--IIVVCNYID----SSNTYELLFYP 527 (827)
Q Consensus 462 pdG~~lavag~-dg----~i-iwd~~t~~w~~f~~~~~e~~~~--v~gl~W~~~--~li~~~~~~----~~~~~~lrly~ 527 (827)
|||+.||..+. ++ .+ +||+.+++.+.+.......... ..+..|..+ .++...... ..+..+|.+|+
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 99998866543 22 37 9999998765432111111111 113456533 333321110 13445677777
Q ss_pred CCCCCccceEEEEec-----------CCccEEEEccCCEEEEEE-cCceEEEEEEEEe
Q 003356 528 RYHLDQSSLLCRKSL-----------LAKPIVMDVYEDYILVTY-RPFDVHIFHVKLF 573 (827)
Q Consensus 528 ~~~l~~~~~~~~~~l-----------~~~~~~l~~~~~~llV~~-~~~~i~l~~~~~~ 573 (827)
.... ....+..... ......++..+..++.++ .++...||.+.+.
T Consensus 327 ~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 327 MKNG-TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp TTTT-EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred ccCC-ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 6411 1011111111 011235566666666644 3567778877654
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.23 E-value=1.6e-10 Score=126.87 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=46.4
Q ss_pred EEEEecceEEEEEcc----CeEEEeecCCceeEEEEEEeChHhhhhcCccc-EEEEcCCccEEEEEecCcEEEEEEEEec
Q 003356 25 IYFKVNNGLLLIASP----CHIELWSSSQHKVRLGKYKRDSESVQREGENL-QAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (827)
Q Consensus 25 v~fspdg~lla~~~~----~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~-~v~wSPDg~~lav~t~dg~l~l~~v~~~ 99 (827)
++|||||+.+|.+.+ ..|.+|+.. .+.. ..+.. ..+... .+.|||||+.||.++.++.|.+|++..+
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~-~~~~-~~l~~------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLE-TQQA-VQLTE------GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETT-TTEE-EECCC------SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECC-CCcE-EEeec------CCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence 579999998887743 268888874 4322 11111 112222 3789999999999999998999987644
Q ss_pred C
Q 003356 100 E 100 (827)
Q Consensus 100 ~ 100 (827)
.
T Consensus 113 ~ 113 (396)
T 3c5m_A 113 E 113 (396)
T ss_dssp C
T ss_pred C
Confidence 3
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.20 E-value=2.5e-09 Score=112.05 Aligned_cols=235 Identities=9% Similarity=0.031 Sum_probs=136.6
Q ss_pred EEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEE-cCCccEEEEEec-CcEEEEEEEEecC
Q 003356 24 IIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW-SPDTKLIAVVTS-SLYLHIFKVQITE 100 (827)
Q Consensus 24 vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~w-SPDg~~lav~t~-dg~l~l~~v~~~~ 100 (827)
-++++|+|+++++. .+++|.+|+.+ +..+..+........+......+++ .++|..+++... ++.|.+|+. .+.
T Consensus 34 ~v~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~ 110 (286)
T 1q7f_A 34 GVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQ 110 (286)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSC
T ss_pred eEEECCCCCEEEEECCCCEEEEECCC--CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCc
Confidence 37899999988876 56789999974 3333332211000112234578999 577776666544 788999883 221
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEEE--eecCCCeEEEE-ecCCcEEEEecCCccCcceeecccCCCCc
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~d~~~llv~-t~dg~i~~~~w~~~~~~~~~l~~~p~~~~ 177 (827)
..... .. .......+ +.++++ ++++ ..++.|.+++.++......
T Consensus 111 ~~~~~-----------------~~-----~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~---------- 157 (286)
T 1q7f_A 111 FVRKF-----------------GA-----TILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNVLHKF---------- 157 (286)
T ss_dssp EEEEE-----------------CT-----TTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEE----------
T ss_pred EEEEe-----------------cC-----ccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCCEEEEe----------
Confidence 10000 00 00112223 344554 5554 4567787765432211100
Q ss_pred ccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccc--eec-
Q 003356 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--KEL- 254 (827)
Q Consensus 178 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~--~~~- 254 (827)
. .......+.. +++.+||+++++...++.+..|+..... .+.
T Consensus 158 -----~--------------------~~~~~~~p~~----------i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~ 202 (286)
T 1q7f_A 158 -----G--------------------CSKHLEFPNG----------VVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG 202 (286)
T ss_dssp -----E--------------------CTTTCSSEEE----------EEECSSSEEEEEEGGGTEEEEEETTCCEEEEESC
T ss_pred -----C--------------------CCCccCCcEE----------EEECCCCCEEEEECCCCEEEEEcCCCCEEEEEcc
Confidence 0 0001112333 3467778877766666777777643211 111
Q ss_pred -CCCCcE-EEEEcCCCCEEEEEecCC-eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 255 -GSGDAV-CASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 255 -~h~~~v-~va~sp~~~lla~g~~dg-~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
++.... .++++++|+++++...++ .|++|+.+ ++.+..+.... ....+.+++++|||+++++ +.|+.|
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~------~~~~~~~i~~~~~g~l~vs-~~~~~v 273 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKV------KHAQCFDVALMDDGSVVLA-SKDYRL 273 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESS------CCSCEEEEEEETTTEEEEE-ETTTEE
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccC------CCCcceeEEECCCCcEEEE-CCCCeE
Confidence 222334 499999999999988886 99999953 55666665510 2234789999999987777 578999
Q ss_pred EEEeccC
Q 003356 332 TVWSVSG 338 (827)
Q Consensus 332 ~vWs~~~ 338 (827)
++|+...
T Consensus 274 ~v~~~~~ 280 (286)
T 1q7f_A 274 YIYRYVQ 280 (286)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 9998754
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.20 E-value=7.2e-10 Score=119.22 Aligned_cols=267 Identities=9% Similarity=0.009 Sum_probs=153.8
Q ss_pred ccCceeecCCCCCCCCCceEEEEEecceEEEEEccC-------------------------eEEEeecCCceeEEEEEEe
Q 003356 5 YGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPC-------------------------HIELWSSSQHKVRLGKYKR 59 (827)
Q Consensus 5 ~gwp~~~~~~~~~~~~~~~vv~fspdg~lla~~~~~-------------------------~v~IW~~~~~~~~l~~~~r 59 (827)
.-||+.-. .- +...-|+++|+|+++++...+ +|.+|+.. .+..+....
T Consensus 14 ~~wp~~~~-~l----~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~- 86 (329)
T 3fvz_A 14 LDWPGVYL-LP----GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN-NAEILQSSG- 86 (329)
T ss_dssp TTCGGGGC-CC----SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT-TCCEEEEEC-
T ss_pred cCCchhce-ec----CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC-CCeEEeccC-
Confidence 35887522 11 123458999999999887544 69999984 444433221
Q ss_pred ChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC-ceeecCCCCCCCceeeeEeeEeecccccccccceEE--
Q 003356 60 DSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE-KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS-- 136 (827)
Q Consensus 60 ~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~-- 136 (827)
...+.....++++|||+++++.+.++.|+.|+..... ........... +. -........
T Consensus 87 ----~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~------------g~--~~~~~~~P~~i 148 (329)
T 3fvz_A 87 ----KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP------------GS--DQNHFCQPTDV 148 (329)
T ss_dssp ----TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC------------CC--STTCCSSEEEE
T ss_pred ----CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC------------CC--CccccCCCcEE
Confidence 1123455789999999988888888999999864221 11111100000 00 001111223
Q ss_pred EeecCCCeEEEEe--cCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEE
Q 003356 137 NIVSDNKHMLLGL--SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (827)
Q Consensus 137 ~~~~d~~~llv~t--~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 214 (827)
++.+++..++++. .++.|++++.++....... ...... .....+-.....
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~---------------~~g~~~------------~~~~~~~~~p~g- 200 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWG---------------EESSGS------------SPRPGQFSVPHS- 200 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEECTTSCEEEEEC---------------EECCSS------------SCCTTEESCEEE-
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEec---------------cCCCCC------------CCCCcccCCCcE-
Confidence 3444244566655 4788887654433211110 000000 000000011223
Q ss_pred EEcCCcceEEEEEeC-CcEEEEeeccCccccceeecccee-----cCCCCcEE-EEEcC------CCCEEEEEecCCeEE
Q 003356 215 ELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAP------EQQILAVGTRRGVVE 281 (827)
Q Consensus 215 ~~~~~~~~~~~~s~d-G~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~-va~sp------~~~lla~g~~dg~v~ 281 (827)
+++.++ |+++++...+..++.|+..+++.. ..+..... ++++| +++..++...+.+|+
T Consensus 201 ---------ia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~ 271 (329)
T 3fvz_A 201 ---------LALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGF 271 (329)
T ss_dssp ---------EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEE
T ss_pred ---------EEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEE
Confidence 457787 888887777778888886544322 23444455 88999 333333334455899
Q ss_pred EEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC
Q 003356 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 282 vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~ 339 (827)
+|+..+ ++.+..+.. ..++......++++|||+++++...++.|++|++.+.
T Consensus 272 ~~~~~~-g~~~~~~~~-----~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 272 VMNFSS-GEIIDVFKP-----VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEETTT-CCEEEEECC-----SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EEEcCC-CeEEEEEcC-----CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 999987 777766532 1126677899999999999999999999999998764
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.19 E-value=1.3e-08 Score=110.97 Aligned_cols=281 Identities=12% Similarity=0.029 Sum_probs=161.9
Q ss_pred cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEec----------CcEEEEEEEEecCceeecCCC
Q 003356 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLYLHIFKVQITEKSIQIGGK 108 (827)
Q Consensus 39 ~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~----------dg~l~l~~v~~~~~~~~~~~~ 108 (827)
+++|.+||.. .+..+..+.- ..++ .++|||||++++++.. +++|.+||+.+...
T Consensus 30 d~~v~v~D~~-t~~~~~~i~~------g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~------- 93 (361)
T 2oiz_A 30 ESRVHVYDYT-NGKFLGMVPT------AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF------- 93 (361)
T ss_dssp GCEEEEEETT-TCCEEEEEEC------CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-------
T ss_pred cCeEEEEECC-CCeEEEEecC------CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-------
Confidence 5689999984 5555543321 1233 8999999999999873 67899998753221
Q ss_pred CCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec--CCcEEEEecCCccCcceeecccCCCCcccce-eccc
Q 003356 109 QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAAL-SHHF 185 (827)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~--dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~-~~~s 185 (827)
+..+.+ .......+....-.++++|+++++++.. ++.|.+++.+.. ... .. ++.
T Consensus 94 ------~~~i~~--~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~--~~~------------~~~i~~- 150 (361)
T 2oiz_A 94 ------EKEISL--PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG--DYV------------EDVTAA- 150 (361)
T ss_dssp ------EEEEEE--CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT--EEE------------EEEGGG-
T ss_pred ------EEEEEc--CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC--cEE------------EEEecC-
Confidence 111111 0000001111223477889999999875 467877654422 111 00 000
Q ss_pred CCCCccccccCCceeccccCCCcccEEEEEEcCCc-ceEEEEEeCCcEEEEeecc-CccccceeeccceecCCCCcEEEE
Q 003356 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAVCAS 263 (827)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~~~~s~dG~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~va 263 (827)
.. ...+...+.. ..++.+++||+++++.... +.+. ........+......+.+.
T Consensus 151 ----------------------~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 206 (361)
T 2oiz_A 151 ----------------------AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA-SQSRSKQMFSVKDDPIFIA 206 (361)
T ss_dssp ----------------------TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE-EEEECCCCSCTTTSCBCSC
T ss_pred ----------------------CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe-eeccccceEcCCCCceEEE
Confidence 00 0001122222 4556778888877766543 3221 1110001111222334455
Q ss_pred EcCCCCEEEEEecCCeEEEEEcCCCCc-ceEEEEeec---CCCCCCCCCCeEEEEECCCCCEEEEEEc-----------C
Q 003356 264 IAPEQQILAVGTRRGVVELYDLAESAS-LIRTVSLYD---WGYSMDDTGPVSCIAWTPDNSAFAVGWK-----------S 328 (827)
Q Consensus 264 ~sp~~~lla~g~~dg~v~vw~~~~~~~-~~~~l~~~~---~~~~~~h~~~V~~l~~spDg~~Lasg~~-----------D 328 (827)
+++++..++..+.+++|.++|+..... ....+.... ....+ .......++|+|||..+.++.. .
T Consensus 207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~ 285 (361)
T 2oiz_A 207 PALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNW-VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA 285 (361)
T ss_dssp CEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTC-EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred ecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccc-ccCCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence 577888888888899999999875221 122222100 00000 0111223789999888877654 3
Q ss_pred CcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeec--ceeEEEccCCc--eEEEEec
Q 003356 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGY--RLYAIEE 390 (827)
Q Consensus 329 g~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg--~~i~~W~~~~~--~l~~~~~ 390 (827)
+.|.+||+.+++.+.++..+. ..+++|+|++ +.+..+ .++.+||..++ +++..+.
T Consensus 286 ~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg----~~l~v~n~~~v~v~D~~t~~l~~~~~i~ 344 (361)
T 2oiz_A 286 AEIWVMDTKTKQRVARIPGRD---ALSMTIDQQR----NLMLTLDGGNVNVYDISQPEPKLLRTIE 344 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTT---CCEEEEETTT----TEEEEECSSCEEEEECSSSSCEEEEEET
T ss_pred ceEEEEECCCCcEEEEEecCC---eeEEEECCCC----CEEEEeCCCeEEEEECCCCcceeeEEec
Confidence 479999999999999998763 8899999998 555443 37889999999 8877753
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.18 E-value=2.1e-09 Score=115.65 Aligned_cols=234 Identities=11% Similarity=0.026 Sum_probs=144.0
Q ss_pred EEEEeCCcEEEEeeccC------------------------ccccceeecccee----cCCCCcEE-EEEcCCCCEEEEE
Q 003356 224 FVLYSNGQLMSCSVSKK------------------------GLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVG 274 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~------------------------~~~~~~~~~~~~~----~~h~~~v~-va~sp~~~lla~g 274 (827)
++++++|+++++...+. ++..|+..+++.. .++..... ++++|+|+++++.
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d 108 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTD 108 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEE
Confidence 34677777777666552 4555655433322 12333444 9999999999999
Q ss_pred ecCCeEEEEEcCCCCcceEEEEee-cCCCCCCCCCCeEEEEECC-CCCEEEEEE-cCCcEEEEeccCCeeEEEecccc--
Q 003356 275 TRRGVVELYDLAESASLIRTVSLY-DWGYSMDDTGPVSCIAWTP-DNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQIS-- 349 (827)
Q Consensus 275 ~~dg~v~vw~~~~~~~~~~~l~~~-~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~-~Dg~v~vWs~~~~~l~~tl~~~~-- 349 (827)
..++.|++|+.+.....+..+... ..+...++......++++| +|+++++.+ .++.|++|+.. +..+.++...+
T Consensus 109 ~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~ 187 (329)
T 3fvz_A 109 VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGEESSG 187 (329)
T ss_dssp TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECEECCS
T ss_pred CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEeccCCCC
Confidence 999999999976411245544321 0111123556789999999 899888886 68999999955 45565554321
Q ss_pred -------ccceeeeeecCC-CCCCccceeecc---eeEEEccCCceEEEEec--CCcceEEE--Eecce-------eeee
Q 003356 350 -------LSSISSPIVKPN-QDCKYEPLMSGT---SMMQWDEYGYRLYAIEE--GSSERVLI--FSFGK-------CCLN 407 (827)
Q Consensus 350 -------~~~v~s~~~sp~-~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~--~~~~~v~~--~~~~~-------~~~s 407 (827)
......++++|+ + ..+++.. .+..|+..+++++..+. .+...+.. ++++. ..++
T Consensus 188 ~~~~~~~~~~p~gia~d~~~g----~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~ 263 (329)
T 3fvz_A 188 SSPRPGQFSVPHSLALVPHLD----QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFG 263 (329)
T ss_dssp SSCCTTEESCEEEEEEETTTT----EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTT
T ss_pred CCCCCcccCCCcEEEEECCCC----EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEec
Confidence 123678899988 5 5665543 78999998777776663 22333433 33322 2222
Q ss_pred cccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceee---ccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY---ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 408 ~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~---~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
...+.++++|+...+.. ...+ .++......++++|||..+++...++.| +|++..
T Consensus 264 ~~~~~~v~~~~~~~g~~--------------------~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 264 DQEPVQGFVMNFSSGEI--------------------IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CSCCCCEEEEETTTCCE--------------------EEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred cCCCcEEEEEEcCCCeE--------------------EEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 22333444444322111 1111 2344567899999999777777778888 998753
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.18 E-value=2.9e-09 Score=125.99 Aligned_cols=128 Identities=16% Similarity=0.005 Sum_probs=83.5
Q ss_pred EeCCcE-EEEeec-cCccccceee--c-c--ceecC-----CCCcEE-EEEcCCCCEEEEEecC----------CeEEEE
Q 003356 227 YSNGQL-MSCSVS-KKGLKLAEFI--K-I--DKELG-----SGDAVC-ASIAPEQQILAVGTRR----------GVVELY 283 (827)
Q Consensus 227 s~dG~~-~~~~~~-~~~~~~~~~~--~-~--~~~~~-----h~~~v~-va~sp~~~lla~g~~d----------g~v~vw 283 (827)
+|||+. ++.+.. +..+..++.. . . ..+.. |...+. ++|||||+.||+++.| .+|.+|
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 388887 665543 2333333432 1 2 12233 444555 9999999999999887 589999
Q ss_pred EcCCCC----cceEEEE-eecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC--------cEEEEecc-CC--eeEEEecc
Q 003356 284 DLAESA----SLIRTVS-LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--------GLTVWSVS-GC--RLMSTIRQ 347 (827)
Q Consensus 284 ~~~~~~----~~~~~l~-~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg--------~v~vWs~~-~~--~l~~tl~~ 347 (827)
++.+.. ...+.+. . +.+.+..++|||||+.||.++.++ .|.+|++. ++ .....+..
T Consensus 167 ~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 167 PLDGSAAADRSAVRELSDD--------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp ETTSTTTTCGGGSEESSCS--------CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred ECCCCccccCCceeEEEec--------CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 987510 3444443 3 556788899999999999877553 79999998 46 12333333
Q ss_pred ccccceeeeeecCCC
Q 003356 348 ISLSSISSPIVKPNQ 362 (827)
Q Consensus 348 ~~~~~v~s~~~sp~~ 362 (827)
++...+.+++|+|++
T Consensus 239 ~~~~~~~~~~~spdg 253 (662)
T 3azo_A 239 GPEEAIAQAEWAPDG 253 (662)
T ss_dssp ETTBCEEEEEECTTS
T ss_pred CCCceEcceEECCCC
Confidence 224567788888887
No 175
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.14 E-value=1.5e-09 Score=129.46 Aligned_cols=232 Identities=8% Similarity=-0.065 Sum_probs=144.1
Q ss_pred EEEEeCCcEEEEeec-----cCccccceeecccee-cCCCCc---EEEEEcCCCCEEEEEecCCe-------------EE
Q 003356 224 FVLYSNGQLMSCSVS-----KKGLKLAEFIKIDKE-LGSGDA---VCASIAPEQQILAVGTRRGV-------------VE 281 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~-----~~~~~~~~~~~~~~~-~~h~~~---v~va~sp~~~lla~g~~dg~-------------v~ 281 (827)
..++|||+.++.+.+ +.++++|+..+++.. ..+... ..++|+|||+.|+.++.|.. |+
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~ 205 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR 205 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence 447788887775543 346788888776544 222222 23899999999999998876 99
Q ss_pred EEEcCCCCcc--eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC----cEEEEeccCCeeEEEeccccccceee
Q 003356 282 LYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR----GLTVWSVSGCRLMSTIRQISLSSISS 355 (827)
Q Consensus 282 vw~~~~~~~~--~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg----~v~vWs~~~~~l~~tl~~~~~~~v~s 355 (827)
+|++.+ +.. ...... .+|...+.+++|||||++|+.++.++ .|.+|+..++. ...+..+ ...+..
T Consensus 206 ~~~l~t-~~~~~~lv~~~------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~-~~~~~~ 276 (695)
T 2bkl_A 206 YHTLGT-EPSKDTVVHER------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKG-VGAKYE 276 (695)
T ss_dssp EEETTS-CGGGCEEEECC------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEEC-SSCCEE
T ss_pred EEECCC-CchhceEEEec------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecC-CCceEE
Confidence 999987 432 122222 12566789999999999998887666 67777765554 3333333 223344
Q ss_pred eeecCCCCCCcccee-ec-----ceeEEEccCCceE---EEEecCC-cceEEEEec--ceeeeecccCCCeeeeEEEEcC
Q 003356 356 PIVKPNQDCKYEPLM-SG-----TSMMQWDEYGYRL---YAIEEGS-SERVLIFSF--GKCCLNRGVSGMTYARQVIYGE 423 (827)
Q Consensus 356 ~~~sp~~~~~~~~l~-sg-----~~i~~W~~~~~~l---~~~~~~~-~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~ 423 (827)
+.+ +++ ..++ +. ..+..|+..+++. ......+ ...+..+.+ ++.+++...|+..++|.+....
T Consensus 277 ~~~-~~g----~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g 351 (695)
T 2bkl_A 277 VHA-WKD----RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKG 351 (695)
T ss_dssp EEE-ETT----EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTC
T ss_pred EEe-cCC----cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCC
Confidence 444 455 3222 11 2678888866542 2222232 334544444 5667777788888887654222
Q ss_pred CeEEEEecCCCCcceEEEeeeceeeccC-CCcEEEEEEcCCCCEEEEEe----CCceE-EEEcCCCeEEee
Q 003356 424 DRLLVVQSEDTDELKILHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAG----LHGLI-LYDIRQKKWRVF 488 (827)
Q Consensus 424 ~~~~~~~~~d~~~~~w~~~~~p~~~~~~-~~~I~~va~SpdG~~lavag----~dg~i-iwd~~t~~w~~f 488 (827)
.. ...+..+ ...+..++++|||+.++... ..+.+ +||+.+++.+.+
T Consensus 352 ~~-------------------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 352 KP-------------------VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp CE-------------------EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred Ce-------------------eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 21 1222222 45677888999998887443 34678 999999876654
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.14 E-value=7.1e-09 Score=108.61 Aligned_cols=221 Identities=10% Similarity=0.081 Sum_probs=135.1
Q ss_pred EEEeCCcEEEEeeccCccccceeeccce--e------cCCCCcEE-EEE-cCCCCEEEEEec-CCeEEEEEcCCCCcceE
Q 003356 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK--E------LGSGDAVC-ASI-APEQQILAVGTR-RGVVELYDLAESASLIR 293 (827)
Q Consensus 225 ~~s~dG~~~~~~~~~~~~~~~~~~~~~~--~------~~h~~~v~-va~-sp~~~lla~g~~-dg~v~vw~~~~~~~~~~ 293 (827)
+++++|+++++...++.+..|+...... + .++....+ +++ .++++++++... ++.|++|+ .+ ++.+.
T Consensus 36 ~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~-g~~~~ 113 (286)
T 1q7f_A 36 AVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QY-GQFVR 113 (286)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TT-SCEEE
T ss_pred EECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CC-CcEEE
Confidence 3567777777666666676666432111 1 12333444 899 578888777754 89999999 34 55555
Q ss_pred EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc-ccccceeeeeecCCCCCCccceeec
Q 003356 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSG 372 (827)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~-~~~~~v~s~~~sp~~~~~~~~l~sg 372 (827)
.+.. .+...+.+++++|||+++++...++.|.+|+..+. ...++.. ........++++|++ ..+++.
T Consensus 114 ~~~~-------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~p~~i~~~~~g----~l~v~~ 181 (286)
T 1q7f_A 114 KFGA-------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVVNDKQ----EIFISD 181 (286)
T ss_dssp EECT-------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEECSSS----EEEEEE
T ss_pred EecC-------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEEEeCCCCccCCcEEEEECCCC----CEEEEE
Confidence 4432 14456899999999998888888899999997654 4445432 123457889999988 766654
Q ss_pred c---eeEEEccCCceEEEEecCC--cceE--EEEec-ceeeeecccCC-CeeeeEEEEcCCeEEEEecCCCCcceEEEee
Q 003356 373 T---SMMQWDEYGYRLYAIEEGS--SERV--LIFSF-GKCCLNRGVSG-MTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (827)
Q Consensus 373 ~---~i~~W~~~~~~l~~~~~~~--~~~v--~~~~~-~~~~~s~~~d~-~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~ 443 (827)
. .+..|+..+.. +...... .... ++++. ++.+++...++ .+.+|+. +.+ .
T Consensus 182 ~~~~~i~~~~~~g~~-~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~---~g~-----------~------ 240 (286)
T 1q7f_A 182 NRAHCVKVFNYEGQY-LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ---DGQ-----------L------ 240 (286)
T ss_dssp GGGTEEEEEETTCCE-EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT---TSC-----------E------
T ss_pred CCCCEEEEEcCCCCE-EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC---CCC-----------E------
Confidence 3 78889986543 3333221 1223 33443 44444444443 4544431 110 0
Q ss_pred eceeecc--CCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 444 LPVSYIS--QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 444 ~p~~~~~--~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
...+.. ....+..++++|||+.+++ +.++.+ +|+...
T Consensus 241 -~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 241 -ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp -EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred -EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 111111 1223678999999986665 678889 998754
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.14 E-value=9.6e-09 Score=110.71 Aligned_cols=200 Identities=12% Similarity=0.030 Sum_probs=117.5
Q ss_pred EEEEEcCCCCEEEEEecC---Ce--EEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC------
Q 003356 260 VCASIAPEQQILAVGTRR---GV--VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS------ 328 (827)
Q Consensus 260 v~va~sp~~~lla~g~~d---g~--v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D------ 328 (827)
...+|||||+.||..+.+ +. |.+|++.+ ++..+.... .+ +..++|||||+.|+.++.+
T Consensus 62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~-g~~~~l~~~---------~~-~~~~~wspdg~~l~~~~~~~~~~~~ 130 (347)
T 2gop_A 62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLET-LSSKKILEA---------KN-IRSLEWNEDSRKLLIVGFKRREDED 130 (347)
T ss_dssp EEEEECTTSSEEEEEEEETTTTEEEEEEEETTT-TEEEEEEEE---------SE-EEEEEECTTSSEEEEEEECCCC---
T ss_pred CCeEECCCCCEEEEEEeccCCCcceEEEEECCC-CceEEEEcC---------CC-ccceeECCCCCEEEEEEccCCCcCC
Confidence 348999999999988764 34 66667765 444433333 34 9999999999999888743
Q ss_pred ---------------------CcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeec--------c-eeEEE
Q 003356 329 ---------------------RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--------T-SMMQW 378 (827)
Q Consensus 329 ---------------------g~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg--------~-~i~~W 378 (827)
..|.+|++.+++....+.. . .+..+.|+|++ -.+.+. . ...+|
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg----~~~~~~~~~~~~~~~~~~~l~ 203 (347)
T 2gop_A 131 FIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK----IVVNVPHREIIPQYFKFWDIY 203 (347)
T ss_dssp ------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE----EEEEEECCCSSCCSSCCEEEE
T ss_pred cEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe----EEEEEecccccccccccccEE
Confidence 5689999988876455544 2 57788888875 222210 1 11233
Q ss_pred ccCCceEEEEecCCcceEEEEec-ceeeeecccCC------CeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccC
Q 003356 379 DEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSG------MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (827)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~------~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~ 451 (827)
...+++....... ..+..+++ ++.++..+.+. ...+|.+. +.. .......+
T Consensus 204 ~~d~~~~~~l~~~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~-------------------~~~l~~~~ 261 (347)
T 2gop_A 204 IWEDGKEEKMFEK--VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKE-------------------VMGILDEV 261 (347)
T ss_dssp EEETTEEEEEEEE--ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSC-------------------EEESSTTC
T ss_pred EeCCCceEEeccC--cceeeECCCCCEEEEEEccccCCccccceEEEEC-CCc-------------------eEeccccC
Confidence 2224443322221 23333344 55554443222 12222221 111 01112345
Q ss_pred CCcEEE-EEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEEeC
Q 003356 452 NWPVQH-VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG 506 (827)
Q Consensus 452 ~~~I~~-va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~ 506 (827)
...+.. ++|+ || .+++++.+|.. +| +.+++.+..... +..+.++.|.+
T Consensus 262 ~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~----~~~v~~~~~s~ 311 (347)
T 2gop_A 262 DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKG----RHWIMGFDVDE 311 (347)
T ss_dssp CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECS----SSEEEEEEESS
T ss_pred CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecC----CCeEEeeeeeC
Confidence 667886 9999 99 99999999999 99 876654332111 22466777877
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.12 E-value=8.7e-09 Score=123.10 Aligned_cols=129 Identities=11% Similarity=0.067 Sum_probs=86.8
Q ss_pred EEEEeCCcEEEEeec-----cCccccceeec------c----ceecCCCCcEEEEEcCCCCEEEEEecC----CeEEEEE
Q 003356 224 FVLYSNGQLMSCSVS-----KKGLKLAEFIK------I----DKELGSGDAVCASIAPEQQILAVGTRR----GVVELYD 284 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~-----~~~~~~~~~~~------~----~~~~~h~~~v~va~sp~~~lla~g~~d----g~v~vw~ 284 (827)
+.+++||+.++.... +..+.+|+... + ..+..+.+.....|+|+|+.|+..+.+ +.|.+|+
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d 317 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINID 317 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEe
Confidence 457788887776654 33455666544 2 223455555555688999988877653 3699999
Q ss_pred cCCCCc--ceEEEEeecCCCCCCCCC--CeEEEEECCCCCEEEEEEcCCc--EEEEeccCCeeEEEeccccccceeeeee
Q 003356 285 LAESAS--LIRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRG--LTVWSVSGCRLMSTIRQISLSSISSPIV 358 (827)
Q Consensus 285 ~~~~~~--~~~~l~~~~~~~~~~h~~--~V~~l~~spDg~~Lasg~~Dg~--v~vWs~~~~~l~~tl~~~~~~~v~s~~~ 358 (827)
+.+ +. ..+.+.. |.. .+..++|++++.+++++..|+. |.+|++.+++....+..+ ...+.++.+
T Consensus 318 ~~~-~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~ 387 (710)
T 2xdw_A 318 FTD-PEESKWKVLVP--------EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSG 387 (710)
T ss_dssp TTS-CCGGGCEEEEC--------CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEEC
T ss_pred CCC-CCcccceeccC--------CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEec
Confidence 876 33 3445544 433 6888999988889999998885 555676566666777655 556777888
Q ss_pred cCCC
Q 003356 359 KPNQ 362 (827)
Q Consensus 359 sp~~ 362 (827)
+|++
T Consensus 388 s~d~ 391 (710)
T 2xdw_A 388 QKKD 391 (710)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8866
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.09 E-value=1.1e-08 Score=112.00 Aligned_cols=192 Identities=10% Similarity=-0.081 Sum_probs=114.6
Q ss_pred EEEcCCCCEEEEEecC---CeEEEEEcCCCCcceEEEEeecCCCCCCCCCC-eEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 262 ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGP-VSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 262 va~sp~~~lla~g~~d---g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~-V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
++|||||+.||....+ ..|.+|++.+ ++..+ +.. +... ...+.|||||+.||.++.++.+.+|++.
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-~~~~~-l~~--------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLET-QQAVQ-LTE--------GKGDNTFGGFISTDERAFFYVKNELNLMKVDLE 110 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT-TEEEE-CCC--------SSCBCTTTCEECTTSSEEEEEETTTEEEEEETT
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCC-CcEEE-eec--------CCCCccccceECCCCCEEEEEEcCCcEEEEECC
Confidence 7899999998887653 3688888776 44322 222 2222 3347899999999999998999999998
Q ss_pred CCeeEEEeccccccceee-------------------eeecCCCCCCccceee--------cceeEEEccCCceEEEEec
Q 003356 338 GCRLMSTIRQISLSSISS-------------------PIVKPNQDCKYEPLMS--------GTSMMQWDEYGYRLYAIEE 390 (827)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s-------------------~~~sp~~~~~~~~l~s--------g~~i~~W~~~~~~l~~~~~ 390 (827)
+++.......+ ...... +.++|++ ..++. ...+..|+..+++......
T Consensus 111 ~~~~~~~~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg----~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~ 185 (396)
T 3c5m_A 111 TLEEQVIYTVD-EEWKGYGTWVANSDCTKLVGIEILKRDWQPLT----SWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ 185 (396)
T ss_dssp TCCEEEEEECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC----SHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE
T ss_pred CCCcEEEEecc-cccCCCCCEEEeccCCccccccccccccCCCC----cceeeeeeccCCCcceEEEEECCCCcEEeecc
Confidence 88755444322 111111 4567776 33221 1267888988877654442
Q ss_pred CCcceE--EEEec--ceeeeecccCCC----eeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccC--CCcEEEEEE
Q 003356 391 GSSERV--LIFSF--GKCCLNRGVSGM----TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ--NWPVQHVAA 460 (827)
Q Consensus 391 ~~~~~v--~~~~~--~~~~~s~~~d~~----~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~--~~~I~~va~ 460 (827)
+...+ ..+++ ++.++..+.+.. ..+|.+...... +..+..+ ...+..++|
T Consensus 186 -~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------------------~~~l~~~~~~~~~~~~~~ 245 (396)
T 3c5m_A 186 -DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-------------------VRKIKEHAEGESCTHEFW 245 (396)
T ss_dssp -ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-------------------CEESSCCCTTEEEEEEEE
T ss_pred -CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-------------------eeEeeccCCCccccceEE
Confidence 22333 44554 444444332222 233333211110 1112222 235788999
Q ss_pred cCCCCEEEEEeCC-----ceE-EEEcCCCeEEee
Q 003356 461 SKDGMFLAVAGLH-----GLI-LYDIRQKKWRVF 488 (827)
Q Consensus 461 SpdG~~lavag~d-----g~i-iwd~~t~~w~~f 488 (827)
||||++|+.++.+ +.+ +||+.+++.+..
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l 279 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV 279 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeEEe
Confidence 9999988877654 447 999998876543
No 180
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.05 E-value=1.8e-08 Score=109.15 Aligned_cols=258 Identities=10% Similarity=0.079 Sum_probs=143.5
Q ss_pred EEEEEecceEEEEEc-----------cCeEEEeecCCceeEEEEEEeChHhhhhcC-cccEEEEcCCccEEEEEec--Cc
Q 003356 24 IIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTS--SL 89 (827)
Q Consensus 24 vv~fspdg~lla~~~-----------~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G-~~~~v~wSPDg~~lav~t~--dg 89 (827)
-+++||||+.+.+++ ++.|.+||.. ....+....-....-..-| .-..++|+|||++++++.. ++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~-t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECC-CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence 389999999665543 4679999994 7766666532210000011 2346999999999999874 68
Q ss_pred EEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecC-CCeEEEEecCCcEEEEecCCccCccee
Q 003356 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFE 168 (827)
Q Consensus 90 ~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d-~~~llv~t~dg~i~~~~w~~~~~~~~~ 168 (827)
.|.++|+.+.+.. ..+ .+.++ . .+.+. ...++..+.||.+..+...........
T Consensus 161 ~VsVID~~t~~vv-------------~tI--------~v~g~---~-~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~ 215 (386)
T 3sjl_D 161 AVGVVDLEGKAFK-------------RML--------DVPDC---Y-HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 215 (386)
T ss_dssp EEEEEETTTTEEE-------------EEE--------ECCSE---E-EEEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred eEEEEECCCCcEE-------------EEE--------ECCCc---c-eeecCCCceeEEECCCCCEEEEECCCCCeEEEe
Confidence 9999998644321 111 11111 0 11111 233444555555554443321110000
Q ss_pred ecccCCCCcccceecccCCCCccccccCCceeccccCCCcccE-EEEEEcCCcceEEEEEeCCcEEEEeeccCcccc---
Q 003356 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI-IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL--- 244 (827)
Q Consensus 169 l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~--- 244 (827)
+...+..+. ..+ ....|.+..+..++.+.+|++++.......+++
T Consensus 216 -----------~~~~~~~~~--------------------~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~ 264 (386)
T 3sjl_D 216 -----------HTEVFHPED--------------------EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA 264 (386)
T ss_dssp -----------ECCCCSCTT--------------------SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCC
T ss_pred -----------ecceecccc--------------------ccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecc
Confidence 000000000 000 011233222334556666776666554443322
Q ss_pred ceeecc-ceecC--CCCcEEEEEcCCCCEEEEEec----------CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeE
Q 003356 245 AEFIKI-DKELG--SGDAVCASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS 311 (827)
Q Consensus 245 ~~~~~~-~~~~~--h~~~v~va~sp~~~lla~g~~----------dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~ 311 (827)
|+.... ....+ ..+.-.++++++++.+.+... .++|.+.|+.+ .+.++++.. ...+.
T Consensus 265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~v---------g~~~~ 334 (386)
T 3sjl_D 265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM---------GHEID 334 (386)
T ss_dssp EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE---------EEEEC
T ss_pred eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEEC---------CCCcc
Confidence 221110 00001 011123788999998888753 25799999988 788887776 23688
Q ss_pred EEEECCCCC-EEEEE-EcCCcEEEEeccCCeeEEEeccc
Q 003356 312 CIAWTPDNS-AFAVG-WKSRGLTVWSVSGCRLMSTIRQI 348 (827)
Q Consensus 312 ~l~~spDg~-~Lasg-~~Dg~v~vWs~~~~~l~~tl~~~ 348 (827)
.|+++|||+ +|.++ +.+++|.++|..+++.+.++...
T Consensus 335 ~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 335 SINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred eEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 999999997 66665 55899999999999999888753
No 181
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.04 E-value=1.1e-07 Score=103.99 Aligned_cols=256 Identities=10% Similarity=0.007 Sum_probs=138.6
Q ss_pred eEEEEEecceEEEEEc-----------cCeEEEeecCCceeEEEEEEeC-hHhhhhcCcccEEEEcCCccEEEEEec--C
Q 003356 23 QIIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRD-SESVQREGENLQAVWSPDTKLIAVVTS--S 88 (827)
Q Consensus 23 ~vv~fspdg~lla~~~-----------~~~v~IW~~~~~~~~l~~~~r~-~~s~~~~G~~~~v~wSPDg~~lav~t~--d 88 (827)
+-++|||||+++.++. ++.|.+||.. ....+....-. ......-..-..++|||||++|+++.. +
T Consensus 69 p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~-t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~ 147 (373)
T 2mad_H 69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV-TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CCeEECCCCCEEEEEeccccccccCCCCCeEEEEECC-CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence 3688999999877764 4679999994 65555544311 111100012247899999999999874 5
Q ss_pred cEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCC-CeEEEEecCCcEEEEecCCccCcce
Q 003356 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAF 167 (827)
Q Consensus 89 g~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~-~~llv~t~dg~i~~~~w~~~~~~~~ 167 (827)
+.|.++| +....... .+...+ .+ .+.+++ ..++..+.||.+..++.++......
T Consensus 148 ~~v~viD-~t~~~~~~--------------------~i~~~~---~~-~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~ 202 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQ--------------------LLSSPT---CY-HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG 202 (373)
T ss_pred CeEEEEE-CCCCEEeE--------------------EcCCCc---eE-EEEeCCCceEEEEcCCCCEEEEECCCcEEEEE
Confidence 7899998 65432110 011111 11 222333 3344455677766654411110000
Q ss_pred eecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccc---c
Q 003356 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK---L 244 (827)
Q Consensus 168 ~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~---~ 244 (827)
...++..+ .........+.+.....++.+.+|+++++.......+ .
T Consensus 203 ------------~~~~~~~~-------------------~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~ 251 (373)
T 2mad_H 203 ------------LVGAMLTA-------------------AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAP 251 (373)
T ss_pred ------------eccccccC-------------------CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeee
Confidence 00000000 0000111122222233333333444444333222211 1
Q ss_pred ceeecccee-cC-CCCcEE-EEEcCCCCEEEEEec----------CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeE
Q 003356 245 AEFIKIDKE-LG-SGDAVC-ASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS 311 (827)
Q Consensus 245 ~~~~~~~~~-~~-h~~~v~-va~sp~~~lla~g~~----------dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~ 311 (827)
|+....... .+ ...... ++++|+++.+.++.. ++.|.++|..+ .+.+.++.. .+...
T Consensus 252 ~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~---------g~~p~ 321 (373)
T 2mad_H 252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISL---------GHDVD 321 (373)
T ss_pred eeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEEC---------CCCcC
Confidence 221111000 00 112233 789999988887654 35899999987 777777754 34578
Q ss_pred EEEECCCCC-EEEEEE-cCCcEEEEeccCCeeEEEe
Q 003356 312 CIAWTPDNS-AFAVGW-KSRGLTVWSVSGCRLMSTI 345 (827)
Q Consensus 312 ~l~~spDg~-~Lasg~-~Dg~v~vWs~~~~~l~~tl 345 (827)
.++|+|||+ ++.++. .++.|.|+|+.+++.+.++
T Consensus 322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 999999999 777776 5899999999999888774
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.03 E-value=7.1e-09 Score=123.86 Aligned_cols=234 Identities=9% Similarity=-0.005 Sum_probs=142.0
Q ss_pred EEEEeCCcEEEEeeccC-----ccccceeeccceec---CCCCcEEEEEcCCCCEEEEEecCCe----------------
Q 003356 224 FVLYSNGQLMSCSVSKK-----GLKLAEFIKIDKEL---GSGDAVCASIAPEQQILAVGTRRGV---------------- 279 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~-----~~~~~~~~~~~~~~---~h~~~v~va~sp~~~lla~g~~dg~---------------- 279 (827)
..++|||+.++.+.++. ++++|+..+++... .+.....++|+|||+.|+.++.++.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK 209 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCE
Confidence 45788888877766543 67788876654431 1122223899999999999998876
Q ss_pred EEEEEcCCCCcce--EEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc-----CCcEEEEeccC------Ce-eEEEe
Q 003356 280 VELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-----SRGLTVWSVSG------CR-LMSTI 345 (827)
Q Consensus 280 v~vw~~~~~~~~~--~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~-----Dg~v~vWs~~~------~~-l~~tl 345 (827)
|++|++.+ +... ..... ..|...+..++|||||++|+.++. +..|.+|++.+ +. ....+
T Consensus 210 v~~~~l~t-~~~~~~~v~~~------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 210 LYYHVLGT-DQSEDILCAEF------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp EEEEETTS-CGGGCEEEECC------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred EEEEECCC-CcccceEEecc------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence 99999977 4322 22222 124566889999999999988765 56899999986 42 34455
Q ss_pred ccccccceeeeeecCCCCCCcccee--ec-----ceeEEEccCCce--EEEEecCCcc--eEEEEec---ceeeeecccC
Q 003356 346 RQISLSSISSPIVKPNQDCKYEPLM--SG-----TSMMQWDEYGYR--LYAIEEGSSE--RVLIFSF---GKCCLNRGVS 411 (827)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~--sg-----~~i~~W~~~~~~--l~~~~~~~~~--~v~~~~~---~~~~~s~~~d 411 (827)
..+ ...+.. .++|++ ..++ +. ..+..|+..+++ .+..+..+.. .+..+.+ ++.+++...+
T Consensus 283 ~~~-~~~~~~-~~s~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 283 IDN-FEGEYD-YVTNEG----TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp ECS-SSSCEE-EEEEET----TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred eCC-CCcEEE-EEeccC----CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 444 222332 366666 3332 11 157788877653 1222222222 3433332 4556666667
Q ss_pred CCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeC----CceE-EEEcCCCe--
Q 003356 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL----HGLI-LYDIRQKK-- 484 (827)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~----dg~i-iwd~~t~~-- 484 (827)
+..++|.+.....+ ....+..+...+..++++|||+.++.... .+.+ .||+.+++
T Consensus 357 g~~~l~~~~~~~g~------------------~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~ 418 (710)
T 2xdw_A 357 VKNTLQLHDLATGA------------------LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE 418 (710)
T ss_dssp TEEEEEEEETTTCC------------------EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred CEEEEEEEECCCCC------------------EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccc
Confidence 76666554321111 01223334567888999999987775433 3677 99998887
Q ss_pred EEee
Q 003356 485 WRVF 488 (827)
Q Consensus 485 w~~f 488 (827)
...+
T Consensus 419 ~~~l 422 (710)
T 2xdw_A 419 PRVF 422 (710)
T ss_dssp CEEE
T ss_pred eEEe
Confidence 5544
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.02 E-value=5.5e-07 Score=103.63 Aligned_cols=240 Identities=9% Similarity=0.070 Sum_probs=128.4
Q ss_pred EEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCceeec
Q 003356 27 FKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQI 105 (827)
Q Consensus 27 fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~~~~~ 105 (827)
.+|++.++++. .+++|.++|.. ....+..+.-. .....+.|||||+++++++.+|.|.+||+......
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~-t~~v~~~i~~g-------~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--- 231 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGS-TYEIKTVLDTG-------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--- 231 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETT-TCCEEEEEECS-------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC---
T ss_pred cCCCceEEEEeCCCCeEEEEECC-CCeEEEEEeCC-------CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc---
Confidence 44555666666 56899999995 66566554311 12247999999999999999999999997411100
Q ss_pred CCCCCCCceeeeEeeEeecccccccccceEEEee----cCCCeEEEEec-CCcEEEEecCCccCcceeecccCCCCcccc
Q 003356 106 GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV----SDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (827)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~----~d~~~llv~t~-dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~ 180 (827)
.+..+ .. +....-.+++ +|+++++++.. ++.+.+++ ....... .
T Consensus 232 --------~v~~i--------~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD--~~t~~~~------------~ 280 (567)
T 1qks_A 232 --------TVAEI--------KI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMD--GETLEPK------------K 280 (567)
T ss_dssp --------EEEEE--------EC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEE--TTTCCEE------------E
T ss_pred --------EeEEE--------ec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEE--CCCCcEE------------E
Confidence 01111 11 1112233667 58999888875 57777764 3332221 1
Q ss_pred eeccc---CCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEee-ccCccccceeecccee---
Q 003356 181 LSHHF---PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE--- 253 (827)
Q Consensus 181 ~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~~~~~~~~~~~~~~~~--- 253 (827)
.++.. .+.+ .......+..+.. ++++..+++.. ..+.+.+++.......
T Consensus 281 ~i~~~~~~~~~~--------------~~~p~~rva~i~~----------s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~ 336 (567)
T 1qks_A 281 IQSTRGMTYDEQ--------------EYHPEPRVAAILA----------SHYRPEFIVNVKETGKILLVDYTDLNNLKTT 336 (567)
T ss_dssp EEECCEECTTTC--------------CEESCCCEEEEEE----------CSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred EEeccccccccc--------------cccCCCceEEEEE----------cCCCCEEEEEecCCCeEEEEecCCCccceee
Confidence 11100 0000 0000112333332 33333222222 1222222322111000
Q ss_pred -cCCCCcEE-EEEcCCCCEEEEEe-cCCeEEEEEcCCCCcceEEEEe-ecCCCCCCCCCCeEEEEECCCCC-EEEEEE-c
Q 003356 254 -LGSGDAVC-ASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSL-YDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-K 327 (827)
Q Consensus 254 -~~h~~~v~-va~sp~~~lla~g~-~dg~v~vw~~~~~~~~~~~l~~-~~~~~~~~h~~~V~~l~~spDg~-~Lasg~-~ 327 (827)
........ +.|+|+++++.+++ .+++|.++|+.+ ++.+..+.. ... .|.+.-..+ ++|++. ..+++. .
T Consensus 337 ~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t-~kl~~~i~vgg~~----Phpg~g~~~-~~p~~g~v~~t~~~g 410 (567)
T 1qks_A 337 EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQT----PHPGRGANF-VHPTFGPVWATSHMG 410 (567)
T ss_dssp EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSS----BCCTTCEEE-EETTTEEEEEEEBSS
T ss_pred eeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC-CcEEEEEeccCcC----CCCccceee-ECCCCCcEEEeCCCC
Confidence 11123344 88999999887766 578999999988 666655543 221 265422222 588855 445553 4
Q ss_pred CCcEEEEeccC
Q 003356 328 SRGLTVWSVSG 338 (827)
Q Consensus 328 Dg~v~vWs~~~ 338 (827)
+++|.+++...
T Consensus 411 ~~~Vsvid~~~ 421 (567)
T 1qks_A 411 DDSVALIGTDP 421 (567)
T ss_dssp SSEEEEEECCT
T ss_pred CCeEEEecCCC
Confidence 68999999876
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.02 E-value=2.5e-08 Score=106.95 Aligned_cols=231 Identities=9% Similarity=0.018 Sum_probs=133.6
Q ss_pred EeCCcEEEEeeccCccccceeeccceecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCC
Q 003356 227 YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (827)
Q Consensus 227 s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~ 305 (827)
++++..++....+.+++.|.......+.++..... ++|+|++++++++..++.|.+||.++ ++.......
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~~~~-------- 84 (333)
T 2dg1_A 14 SGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPFVS-------- 84 (333)
T ss_dssp CGGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEEC--------
T ss_pred cCCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEEeeC--------
Confidence 33333333323344555553322222333334444 99999999888999999999999876 444333323
Q ss_pred CCCCeEEEEECCCCCEEEEEEcC----CcEEEEeccCCeeEEEecc-ccccceeeeeecCCCCCCccceeecc-------
Q 003356 306 DTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT------- 373 (827)
Q Consensus 306 h~~~V~~l~~spDg~~Lasg~~D----g~v~vWs~~~~~l~~tl~~-~~~~~v~s~~~sp~~~~~~~~l~sg~------- 373 (827)
+...+.+++|+|||++++++..+ +.|.+|+..++.....+.. .....+..++++|++ ..+++..
T Consensus 85 ~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g----~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 85 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG----GFYFTDFRGYSTNP 160 (333)
T ss_dssp SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS----CEEEEECCCBTTBC
T ss_pred CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC----CEEEEeccccccCC
Confidence 56789999999999988888776 6899999988775533332 113467888999988 6666432
Q ss_pred --eeEEEccCCceEEEEecCCcceE--EEEec-ce-eeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeecee
Q 003356 374 --SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (827)
Q Consensus 374 --~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~ 447 (827)
.+..++..++++...... .... .+++. ++ ..++.+.++.+..|++......+. ... ......
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~----------~~~-~~~~~~ 228 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPIIQN-ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ----------PFG-ATIPYY 228 (333)
T ss_dssp CEEEEEECTTSCCEEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE----------EEE-EEEEEE
T ss_pred CceEEEEeCCCCEEEEeecC-CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcc----------ccc-ceEEEe
Confidence 344555555444332211 1112 33444 33 233333445555554321111000 000 001111
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCC
Q 003356 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (827)
Q Consensus 448 ~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~ 483 (827)
+.++ ..+..++++++|+..++...++.+ +||...+
T Consensus 229 ~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~ 264 (333)
T 2dg1_A 229 FTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY 264 (333)
T ss_dssp CCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSC
T ss_pred cCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCC
Confidence 2222 356789999999987777677777 9998543
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.00 E-value=2.2e-08 Score=105.49 Aligned_cols=228 Identities=9% Similarity=-0.011 Sum_probs=132.6
Q ss_pred EEEEEeCCc-EEEEeeccCccccceeecc-ceecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 223 LFVLYSNGQ-LMSCSVSKKGLKLAEFIKI-DKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 223 ~~~~s~dG~-~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
..+++++|+ +++++..++.+..|+.... ..+..+...+. ++++|+|+++++...++.|.+||..+ ++.........
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~ 110 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG-GEWESIADSFE 110 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-CCEEEEECEET
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-CcEEEEeeccC
Confidence 456778887 6776666777777775543 12233444455 99999999988887789999999866 44333222100
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEE----E-------------cCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 300 WGYSMDDTGPVSCIAWTPDNSAFAVG----W-------------KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~spDg~~Lasg----~-------------~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
......+..++++|||+++++. . ..+.|..++.. ++. ..+..+ ......++|+|++
T Consensus 111 ----~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~-~~~~~gi~~s~dg 183 (296)
T 3e5z_A 111 ----GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRD-RVKPNGLAFLPSG 183 (296)
T ss_dssp ----TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECC-CSSEEEEEECTTS
T ss_pred ----CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecC-CCCCccEEECCCC
Confidence 0012356789999999988873 2 12355555555 333 333332 3456789999998
Q ss_pred CCCccceeecc---eeEEEccC-CceE---EEEecCCcceE--EEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCC
Q 003356 363 DCKYEPLMSGT---SMMQWDEY-GYRL---YAIEEGSSERV--LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (827)
Q Consensus 363 ~~~~~~l~sg~---~i~~W~~~-~~~l---~~~~~~~~~~v--~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d 433 (827)
..+++.. .+..|+.. .+++ ......+.... ++++. ++ ++|... ..++.++....
T Consensus 184 ----~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~---------~G--~l~v~~--~~~v~~~~~~g 246 (296)
T 3e5z_A 184 ----NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA---------GG--LIWASA--GDGVHVLTPDG 246 (296)
T ss_dssp ----CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT---------TS--CEEEEE--TTEEEEECTTS
T ss_pred ----CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC---------CC--CEEEEc--CCeEEEECCCC
Confidence 5554333 67777764 3333 11211111111 22222 22 233322 34444444321
Q ss_pred CCcceEEEeeeceeeccCCCcEEEEEE-cCCCCEEEEEeCCceEEEEcCCCeE
Q 003356 434 TDELKILHLNLPVSYISQNWPVQHVAA-SKDGMFLAVAGLHGLILYDIRQKKW 485 (827)
Q Consensus 434 ~~~~~w~~~~~p~~~~~~~~~I~~va~-SpdG~~lavag~dg~iiwd~~t~~w 485 (827)
. . ...+..+.. +.+++| +|||+.|++++.+|+..++..+++-
T Consensus 247 ~---~------~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 247 D---E------LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL 289 (296)
T ss_dssp C---E------EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred C---E------EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence 0 1 122333444 788999 6999999999998877888888753
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.00 E-value=2.9e-08 Score=106.88 Aligned_cols=215 Identities=9% Similarity=0.064 Sum_probs=128.5
Q ss_pred EEEEeCCcEEEEeecc---Cc--cccceeeccce--ecCCCCcEE-EEEcCCCCEEEEEecC------------------
Q 003356 224 FVLYSNGQLMSCSVSK---KG--LKLAEFIKIDK--ELGSGDAVC-ASIAPEQQILAVGTRR------------------ 277 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~---~~--~~~~~~~~~~~--~~~h~~~v~-va~sp~~~lla~g~~d------------------ 277 (827)
..++|||+.++....+ +. +.+++...++. +..+.. +. ++|+|||+.|+.++.+
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC--
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeec
Confidence 4577888777666543 22 33444433322 222223 55 9999999999988753
Q ss_pred ---------CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC-------cEEEEeccCCee
Q 003356 278 ---------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-------GLTVWSVSGCRL 341 (827)
Q Consensus 278 ---------g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg-------~v~vWs~~~~~l 341 (827)
..|.+|++.+ ++.++.+.. . .+..++|+||| +++++..++ ...||.+.+++.
T Consensus 143 g~~~~~~~~~~l~~~d~~~-~~~~~~l~~---------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTES-EEVIEEFEK---------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp -------CEEEEEEEETTT-TEEEEEEEE---------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred CcccccCccceEEEEECCC-CeEEeeecC---------C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce
Confidence 5788899876 554344443 1 57889999999 888776642 445665555543
Q ss_pred EEEeccccccceeeeeecCCCCCCccceeec-----------ceeEEEccCCceEEEEecCCcceEEE-Eec-ceeeeec
Q 003356 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSG-----------TSMMQWDEYGYRLYAIEEGSSERVLI-FSF-GKCCLNR 408 (827)
Q Consensus 342 ~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg-----------~~i~~W~~~~~~l~~~~~~~~~~v~~-~~~-~~~~~s~ 408 (827)
..+..+ ..+.++ +|++ ..++.. ..+..|+ +++......++...+.. +.+ ...++++
T Consensus 211 -~~l~~~--~~~~~~--spdg----~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg~~~~~ 279 (347)
T 2gop_A 211 -EKMFEK--VSFYAV--DSDG----ERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGKVYFTL 279 (347)
T ss_dssp -EEEEEE--ESEEEE--EECS----SCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTEEEEEE
T ss_pred -EEeccC--cceeeE--CCCC----CEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEcCcEEEEE
Confidence 333332 233343 7887 444322 1455666 45544444444444432 333 3366677
Q ss_pred ccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE--EEEcCCCeEE
Q 003356 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQKKWR 486 (827)
Q Consensus 409 ~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i--iwd~~t~~w~ 486 (827)
+.++..++| +. ... +.....+...|.+++|+| ..+++++.++.. +|.+. ++.+
T Consensus 280 ~~~~~~~l~-~~-~g~--------------------~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~ 334 (347)
T 2gop_A 280 FEEGSVNLY-IW-DGE--------------------IKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEK 334 (347)
T ss_dssp EETTEEEEE-EE-SSS--------------------EEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEE
T ss_pred ecCCcEEEE-Ec-CCc--------------------eEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEE
Confidence 778888888 65 322 223334566789999999 677777777654 78776 5544
Q ss_pred e
Q 003356 487 V 487 (827)
Q Consensus 487 ~ 487 (827)
.
T Consensus 335 ~ 335 (347)
T 2gop_A 335 Q 335 (347)
T ss_dssp E
T ss_pred E
Confidence 3
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.98 E-value=1.5e-08 Score=108.60 Aligned_cols=244 Identities=9% Similarity=0.068 Sum_probs=129.9
Q ss_pred eEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 003356 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (827)
Q Consensus 23 ~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~ 101 (827)
..++|+|++..++.+ ++..++.|.. ++ ...+. ..+....+++|+|||+.+++++.++.|.+|+...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~------~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 9 PTLFYSGKSNSAVPIISESELQTITA-EP---WLEIS------KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp CBCCSCGGGGCSSCCCCGGGSCEEEC-EE---EEEEE------SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred ceeeecCCccceeEEeecccCccccc-ce---eEEEe------ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE
Confidence 346789998876655 6778889944 12 22111 1123346899999999878888889999998653321
Q ss_pred eeecCCCCCCCceeeeEeeEeecccccccccceEEEee--cCCCeEEEEec-C----CcEEEEecCCccCcceeecccCC
Q 003356 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SDNKHMLLGLS-D----GSLYSISWKGEFYGAFELVHSSN 174 (827)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~--~d~~~llv~t~-d----g~i~~~~w~~~~~~~~~l~~~p~ 174 (827)
.... . .....+.+++ ++++ +++++. + +.|.+++.++...... +
T Consensus 79 ~~~~-----------------~------~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~-~----- 128 (333)
T 2dg1_A 79 KRPF-----------------V------SHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDI-I----- 128 (333)
T ss_dssp EEEE-----------------E------CSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEE-E-----
T ss_pred EEEe-----------------e------CCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEE-E-----
Confidence 1000 0 0112344444 4444 555543 3 4666644332211100 0
Q ss_pred CCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeecc------Cccccceee
Q 003356 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK------KGLKLAEFI 248 (827)
Q Consensus 175 ~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~------~~~~~~~~~ 248 (827)
........+.++. +.+||+++++...+ ..+..++..
T Consensus 129 ----------------------------~~~~~~~~~~~i~----------~d~~g~l~v~~~~~~~~~~~~~l~~~~~~ 170 (333)
T 2dg1_A 129 ----------------------------EDLSTAYCIDDMV----------FDSKGGFYFTDFRGYSTNPLGGVYYVSPD 170 (333)
T ss_dssp ----------------------------CSSSSCCCEEEEE----------ECTTSCEEEEECCCBTTBCCEEEEEECTT
T ss_pred ----------------------------ccCccCCcccceE----------ECCCCCEEEEeccccccCCCceEEEEeCC
Confidence 0000112344544 45566655544321 112222211
Q ss_pred ccc--eecCC-CCcEEEEEcCCCCEEE-EEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEE
Q 003356 249 KID--KELGS-GDAVCASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (827)
Q Consensus 249 ~~~--~~~~h-~~~v~va~sp~~~lla-~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Las 324 (827)
..+ .+... .....++|+|+++.|. +.+.++.|.+|+..+.+.....+.........++ ..+..+++++||++.++
T Consensus 171 ~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~ 249 (333)
T 2dg1_A 171 FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVA 249 (333)
T ss_dssp SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEE
T ss_pred CCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEE
Confidence 111 11111 1233489999998554 4456889999999642333322211000000012 46788999999999888
Q ss_pred EEcCCcEEEEeccCCeeEEEec
Q 003356 325 GWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 325 g~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
...+++|.+|+.. ++.+..+.
T Consensus 250 ~~~~~~v~~~d~~-g~~~~~~~ 270 (333)
T 2dg1_A 250 MYGQGRVLVFNKR-GYPIGQIL 270 (333)
T ss_dssp EETTTEEEEECTT-SCEEEEEE
T ss_pred EcCCCEEEEECCC-CCEEEEEE
Confidence 8888999999985 44555554
No 188
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.96 E-value=1.3e-08 Score=122.24 Aligned_cols=233 Identities=9% Similarity=-0.034 Sum_probs=143.6
Q ss_pred EEEEeCCcEEEEeecc-----CccccceeeccceecCCCCcE---EEEEcCCCCEEEEEecCCe--------------EE
Q 003356 224 FVLYSNGQLMSCSVSK-----KGLKLAEFIKIDKELGSGDAV---CASIAPEQQILAVGTRRGV--------------VE 281 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~-----~~~~~~~~~~~~~~~~h~~~v---~va~sp~~~lla~g~~dg~--------------v~ 281 (827)
..++|||+.++.+.++ .++++|+..+++....+...+ .++|+|| +.|+.++.|+. |+
T Consensus 168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~ 246 (741)
T 1yr2_A 168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW 246 (741)
T ss_dssp EEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence 4578888887776654 347778876665432211111 3789999 99999887654 88
Q ss_pred EEEcCCCCcc--eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC-----cEEEEeccCC--eeEEEeccccccc
Q 003356 282 LYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-----GLTVWSVSGC--RLMSTIRQISLSS 352 (827)
Q Consensus 282 vw~~~~~~~~--~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg-----~v~vWs~~~~--~l~~tl~~~~~~~ 352 (827)
+|++.+ +.. ...+.. ..+...+..+.|||||++|+..+.++ .|.+|++.++ .....+..+ ...
T Consensus 247 ~~~lgt-~~~~~~lv~~~------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~ 318 (741)
T 1yr2_A 247 LHRLGT-PQSADQPVFAT------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD-LKA 318 (741)
T ss_dssp EEETTS-CGGGCEEEECC------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS-SSS
T ss_pred EEECCC-CchhCEEEecc------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC-CCc
Confidence 999876 332 122222 11444688999999999998877554 7999999876 314445443 222
Q ss_pred eeeeeecCCCCCCccceeec-------ceeEEEccCCc--eEEEEecCCcceEEEEec--ceeeeecccCCCeeeeEEEE
Q 003356 353 ISSPIVKPNQDCKYEPLMSG-------TSMMQWDEYGY--RLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIY 421 (827)
Q Consensus 353 v~s~~~sp~~~~~~~~l~sg-------~~i~~W~~~~~--~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~ 421 (827)
+... ++|++ ..++.. ..+..|+..++ +.......+...+..+.+ ++.+++...++..++|.+..
T Consensus 319 ~~~~-~~~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 319 QWDF-VDGVG----DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp CEEE-EEEET----TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEET
T ss_pred eEEE-EeccC----CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeC
Confidence 3333 23665 333221 15788888764 333444444444544444 55667777788777776542
Q ss_pred cCCeEEEEecCCCCcceEEEeeeceeecc-CCCcEEEEEEcCCCCEEEEEe----CCceE-EEEcCCCeEEeeC
Q 003356 422 GEDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAG----LHGLI-LYDIRQKKWRVFG 489 (827)
Q Consensus 422 ~~~~~~~~~~~d~~~~~w~~~~~p~~~~~-~~~~I~~va~SpdG~~lavag----~dg~i-iwd~~t~~w~~f~ 489 (827)
.... +..+.. +...+..++++|||+.++... ..+.+ +||+.+++.+.+.
T Consensus 394 ~g~~-------------------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 394 DGKP-------------------AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWE 448 (741)
T ss_dssp TSCE-------------------EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECS
T ss_pred CCCc-------------------eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 2221 122221 345688899999998776432 34678 9999999877664
No 189
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.94 E-value=7.9e-08 Score=115.34 Aligned_cols=150 Identities=13% Similarity=0.066 Sum_probs=92.6
Q ss_pred EEEEeCCcEEEEeeccC-----ccccceeecc--c---eecCCCCcEEEEEcCCCCEEEEEec----CCeEEEEEcCCCC
Q 003356 224 FVLYSNGQLMSCSVSKK-----GLKLAEFIKI--D---KELGSGDAVCASIAPEQQILAVGTR----RGVVELYDLAESA 289 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~-----~~~~~~~~~~--~---~~~~h~~~v~va~sp~~~lla~g~~----dg~v~vw~~~~~~ 289 (827)
+.+++||+.++....+. .+.+|+...+ + .+..+.+...-.++|+|+.|+..+. ++.|.+|++++..
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 44778888777666433 4556666543 2 2334444444234589999888876 3459999987621
Q ss_pred cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc-CCeeEEEeccccccceeeeeecCCCCCCccc
Q 003356 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEP 368 (827)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~-~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~ 368 (827)
...+.+.. .+...+..++|+ ++.++++...|+..+||.+. .+.....+..++...+..+.++|++ ..
T Consensus 353 ~~~~~l~~-------~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~----~~ 420 (741)
T 1yr2_A 353 PRFDTVVP-------ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGD----RH 420 (741)
T ss_dssp CEEEEEEC-------CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTC----SC
T ss_pred cccEEEec-------CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCC----CE
Confidence 23333322 145567788888 67788899999988888664 3445555554334567788888876 33
Q ss_pred ee----ec---ceeEEEccCCceE
Q 003356 369 LM----SG---TSMMQWDEYGYRL 385 (827)
Q Consensus 369 l~----sg---~~i~~W~~~~~~l 385 (827)
++ +. .++..|+..+++.
T Consensus 421 l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 421 AYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEcCCCCCCEEEEEECCCCcE
Confidence 32 11 2677788776663
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.93 E-value=6.5e-08 Score=115.15 Aligned_cols=148 Identities=9% Similarity=-0.039 Sum_probs=87.9
Q ss_pred EEEEeCCcEEEEeeccC----ccccceeecc--ceecCCCCcEE-EEEcCCCCEEEEEe---cCCeEEEEEcCCCCcc--
Q 003356 224 FVLYSNGQLMSCSVSKK----GLKLAEFIKI--DKELGSGDAVC-ASIAPEQQILAVGT---RRGVVELYDLAESASL-- 291 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~----~~~~~~~~~~--~~~~~h~~~v~-va~sp~~~lla~g~---~dg~v~vw~~~~~~~~-- 291 (827)
+.+++||+.++....+. .+.+++...+ ..+..+.+... ..+ ++|++++... .++.|.+|++++ +..
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~-~~~~~ 309 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK-PARAS 309 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB-CSGGG
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC-CCccC
Confidence 44677777666665544 2333332221 12233333333 445 6666444433 258999999876 332
Q ss_pred eEEEEeecCCCCCCC-CCCeEEEEECCCCCEEEEEEcCCcEEEEecc-CCeeEEEeccccccceeeeeecCCCCCCccce
Q 003356 292 IRTVSLYDWGYSMDD-TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (827)
Q Consensus 292 ~~~l~~~~~~~~~~h-~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~-~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l 369 (827)
...+... + ...+..++|+ ++.++++...|+..++|.+. .+.....+..++...+..+.++|++ ..+
T Consensus 310 ~~~l~~~-------~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~----~~l 377 (695)
T 2bkl_A 310 WKEIVPE-------DSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDL----DDA 377 (695)
T ss_dssp CEEEECC-------CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTC----SEE
T ss_pred CeEEecC-------CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCC----CEE
Confidence 3333330 2 4468889998 78899999999999988764 3445555654435567788888876 333
Q ss_pred e----ec---ceeEEEccCCceE
Q 003356 370 M----SG---TSMMQWDEYGYRL 385 (827)
Q Consensus 370 ~----sg---~~i~~W~~~~~~l 385 (827)
+ +. .++..|+..+++.
T Consensus 378 ~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 378 YYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEcCCCCCCEEEEEECCCCcE
Confidence 3 21 1677788776653
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.90 E-value=5.3e-08 Score=100.72 Aligned_cols=224 Identities=6% Similarity=-0.031 Sum_probs=126.3
Q ss_pred EEEeCCcEEE-EeeccCccccceeecccee---cCC-CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 225 VLYSNGQLMS-CSVSKKGLKLAEFIKIDKE---LGS-GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 225 ~~s~dG~~~~-~~~~~~~~~~~~~~~~~~~---~~h-~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
++.+||++++ +...++.+..++....... ..+ ..+..++++++++++++.. ++.|.+|+.+. . ....+..
T Consensus 30 ~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~-~-~~~~~~~-- 104 (270)
T 1rwi_B 30 AVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS-N-NQTVLPF-- 104 (270)
T ss_dssp EECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC-S-CCEECCC--
T ss_pred EECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC-c-eEeeeec--
Confidence 3556666665 3344455555554322111 112 2333499999999776666 88999998765 2 2222221
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeE
Q 003356 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~ 376 (827)
.....+..++++|||+++++...++.|.+|+..+......... +......+++++++ ..+++.. .+.
T Consensus 105 -----~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g----~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 105 -----DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSG----NVYVTDTDNNRVV 174 (270)
T ss_dssp -----CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC-SCCSCCCEEECTTC----CEEEEEGGGTEEE
T ss_pred -----CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc-cCCCceeEEEeCCC----CEEEEECCCCEEE
Confidence 1235689999999999888877788999997655433222111 12356778888887 6665432 678
Q ss_pred EEccCCceEEEEecCCcceE--EEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCc
Q 003356 377 QWDEYGYRLYAIEEGSSERV--LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (827)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v--~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~ 454 (827)
.|+..+.........+.... ++++. ++ .+|.......++..+....... . .....+-..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~---------~g--~l~v~~~~~~~v~~~~~~~~~~--~------~~~~~~~~~ 235 (270)
T 1rwi_B 175 KLEAESNNQVVLPFTDITAPWGIAVDE---------AG--TVYVTEHNTNQVVKLLAGSTTS--T------VLPFTGLNT 235 (270)
T ss_dssp EECTTTCCEEECCCSSCCSEEEEEECT---------TC--CEEEEETTTSCEEEECTTCSCC--E------ECCCCSCSC
T ss_pred EEecCCCceEeecccCCCCceEEEECC---------CC--CEEEEECCCCcEEEEcCCCCcc--e------eeccCCCCC
Confidence 88887766543322221222 22222 22 2232222333343333211110 0 001122245
Q ss_pred EEEEEEcCCCCEEEEEeCCceE-EEEcCC
Q 003356 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (827)
Q Consensus 455 I~~va~SpdG~~lavag~dg~i-iwd~~t 482 (827)
+..++++++|+.+++...++.+ +|+...
T Consensus 236 p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 236 PLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred ceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 7899999999988888888888 888754
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.82 E-value=2.7e-07 Score=95.33 Aligned_cols=127 Identities=7% Similarity=0.024 Sum_probs=78.4
Q ss_pred EEeCCcEEEEeeccCccccceeecccee---cCC-CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCC
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGS-GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h-~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~ 301 (827)
+.++|+++++...++.+..++....... ... ..+..++++++|++.++...++.|.+|+... .........
T Consensus 115 ~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~---- 189 (270)
T 1rwi_B 115 VDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-NNQVVLPFT---- 189 (270)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT-CCEEECCCS----
T ss_pred ECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC-CceEeeccc----
Confidence 4556665555444444544432221111 111 2333489999999888887889999999765 332211111
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 302 ~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+...+..++++|||++.++...++.|.+|+..+..... ....+.....++++++++
T Consensus 190 ----~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 190 ----DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDR 245 (270)
T ss_dssp ----SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTC
T ss_pred ----CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCC
Confidence 33568999999999888888888999999998765432 221112345666776665
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.79 E-value=4.4e-06 Score=87.20 Aligned_cols=192 Identities=7% Similarity=-0.010 Sum_probs=111.7
Q ss_pred cEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 259 ~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
+..+++++++++.++...++.|..|+. + +... .+.. ..+...+..+++.|||++.++...++.|..|+. +
T Consensus 101 ~~~i~~~~~g~l~v~~~~~~~i~~~d~-~-g~~~-~~~~------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~ 170 (299)
T 2z2n_A 101 PYGITEGPNGDIWFTEMNGNRIGRITD-D-GKIR-EYEL------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S 170 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECT-T-CCEE-EEEC------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred ceeeEECCCCCEEEEecCCceEEEECC-C-CCEE-EecC------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C
Confidence 334999999998888878899999987 4 3322 2221 013456899999999998888877789999999 5
Q ss_pred CeeEEE-eccccccceeeeeecCCCCCCccceeec---ceeEEEccCCceEEEE-ecCCcceEEEEecceeeeecccCCC
Q 003356 339 CRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSG---TSMMQWDEYGYRLYAI-EEGSSERVLIFSFGKCCLNRGVSGM 413 (827)
Q Consensus 339 ~~l~~t-l~~~~~~~v~s~~~sp~~~~~~~~l~sg---~~i~~W~~~~~~l~~~-~~~~~~~v~~~~~~~~~~s~~~d~~ 413 (827)
++.... +... ......+++++++ ..+++. ..+..|+. +++.... .......+..+.+ ..++.
T Consensus 171 g~~~~~~~~~~-~~~~~~i~~~~~g----~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~-------~~~g~ 237 (299)
T 2z2n_A 171 GDITEFKIPTP-ASGPVGITKGNDD----ALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITA-------GAGID 237 (299)
T ss_dssp CCEEEEECSST-TCCEEEEEECTTS----SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE-------CSTTC
T ss_pred CcEEEeeCCCC-CCcceeEEECCCC----CEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEE-------CCCCC
Confidence 544332 2222 3457788888887 666543 26777887 4443322 1212222322221 11221
Q ss_pred eeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEcCCCe
Q 003356 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKK 484 (827)
Q Consensus 414 ~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~~t~~ 484 (827)
+|.......++..+... . ....+.++ .+...+.++++ ++|+..++.+.+++..++..+++
T Consensus 238 --l~v~~~~~~~i~~~d~~-g---~~~~~~~~----~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 238 --LWFTEWGANKIGRLTSN-N---IIEEYPIQ----IKSAEPHGICF-DGETIWFAMECDKIGKLTLIKDN 297 (299)
T ss_dssp --EEEEETTTTEEEEEETT-T---EEEEEECS----SSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC---
T ss_pred --EEEeccCCceEEEECCC-C---ceEEEeCC----CCCCccceEEe-cCCCEEEEecCCcEEEEEcCccc
Confidence 33333334444444431 1 11111112 23456889999 99987776665565588887653
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.79 E-value=4.6e-07 Score=94.51 Aligned_cols=213 Identities=9% Similarity=0.014 Sum_probs=124.1
Q ss_pred eCCcEEEEeeccCccccceeecccee---cCCC--CcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCC
Q 003356 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSG--DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (827)
Q Consensus 228 ~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~--~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~ 302 (827)
..|+++++++.++.+.+|+..+++.. ..+. ..-.+++.|+|++++ +.++.|..||. + ++.+..+...
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~-G~~~W~~~~~---- 74 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D-GRELWNIAAP---- 74 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T-SCEEEEEECC----
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C-CCEEEEEcCC----
Confidence 44566666666666666666444432 2222 233489999999999 45788999998 5 7777776651
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEEc-CCcEEEEeccCCeeEEEecccc-----ccceeeeeecCCCCCCccceeecc---
Q 003356 303 SMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQIS-----LSSISSPIVKPNQDCKYEPLMSGT--- 373 (827)
Q Consensus 303 ~~~h~~~V~~l~~spDg~~Lasg~~-Dg~v~vWs~~~~~l~~tl~~~~-----~~~v~s~~~sp~~~~~~~~l~sg~--- 373 (827)
+...+.++.+.|||+.+++.+. ++.+..++..+ +.+.++.-.. ......+++.+++ ..+++..
T Consensus 75 ---~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~l~~~~~~~~~~~~~~~~~~v~~~~~G----~~lv~~~~~~ 146 (276)
T 3no2_A 75 ---AGCEMQTARILPDGNALVAWCGHPSTILEVNMKG-EVLSKTEFETGIERPHAQFRQINKNKKG----NYLVPLFATS 146 (276)
T ss_dssp ---TTCEEEEEEECTTSCEEEEEESTTEEEEEECTTS-CEEEEEEECCSCSSGGGSCSCCEECTTS----CEEEEETTTT
T ss_pred ---CCccccccEECCCCCEEEEecCCCCEEEEEeCCC-CEEEEEeccCCCCcccccccCceECCCC----CEEEEecCCC
Confidence 2346889999999999999887 77788888754 4554443110 1123344566666 6666543
Q ss_pred eeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeecc-C
Q 003356 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-Q 451 (827)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~-~ 451 (827)
.+..|+..+..+|..-......-..... ++.+++++.++.+..++.. .-..+|+.-.- ...+ .
T Consensus 147 ~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~-------------tG~~~w~~~~~--~~~~~~ 211 (276)
T 3no2_A 147 EVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLE-------------SNRIVRRVNAN--DIEGVQ 211 (276)
T ss_dssp EEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTT-------------TCCEEEEEEGG--GSBSCC
T ss_pred EEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCc-------------CCcEEEEecCC--CCCCcc
Confidence 7889999855555543221111122222 5555554444333332211 12234543210 0000 1
Q ss_pred CCcEEEEEEcCCCCEEEEEe
Q 003356 452 NWPVQHVAASKDGMFLAVAG 471 (827)
Q Consensus 452 ~~~I~~va~SpdG~~lavag 471 (827)
-..+..++..++|..+++..
T Consensus 212 l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEE
T ss_pred ccccccceEcCCCCEEEEec
Confidence 23367888999999888773
No 195
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.78 E-value=5.3e-07 Score=99.38 Aligned_cols=254 Identities=9% Similarity=0.067 Sum_probs=139.2
Q ss_pred eEEEEEecceEEEEEc-----------cCeEEEeecCCceeEEEEEEeC-hHhhhhcCcccEEEEcCCccEEEEEec--C
Q 003356 23 QIIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRD-SESVQREGENLQAVWSPDTKLIAVVTS--S 88 (827)
Q Consensus 23 ~vv~fspdg~lla~~~-----------~~~v~IW~~~~~~~~l~~~~r~-~~s~~~~G~~~~v~wSPDg~~lav~t~--d 88 (827)
|-+++||||+.+.++. ++.|.++|.. ....+....-. ......-..-..++|||||++++++.. +
T Consensus 121 Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~-t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 121 PHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV-TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred CceEECCCCCEEEEEeccccccccCCCCCEEEEEECC-CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC
Confidence 3588999998665553 4689999994 66666655321 000000012346899999999999874 5
Q ss_pred cEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCC-CeEEEEecCCcEEEEecCCccCcce
Q 003356 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAF 167 (827)
Q Consensus 89 g~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~-~~llv~t~dg~i~~~~w~~~~~~~~ 167 (827)
+.|.++|+.+.+. +..+ .+.+. ..+.+++ ..++..+.||.+..++.........
T Consensus 200 ~~VsVID~~t~kv-------------v~~I--------~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 200 PAVGVVDLEGKTF-------------DRML--------DVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp CEEEEEETTTTEE-------------EEEE--------ECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred CeEEEEECCCCeE-------------EEEE--------EcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 7899998764331 1111 11110 1122223 2334445566665555421111000
Q ss_pred eecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCcccc---
Q 003356 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL--- 244 (827)
Q Consensus 168 ~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~--- 244 (827)
. . ..+..+.+ .....+.+.+....+.+.+..|+++++.....++.+
T Consensus 255 -~----------~-~~~~v~~~-------------------p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~ 303 (426)
T 3c75_H 255 -N----------T-EVFHTEDE-------------------LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP 303 (426)
T ss_dssp -E----------C-CCCSCTTS-------------------CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC
T ss_pred -e----------e-eeeccCCC-------------------ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee
Confidence 0 0 00000000 000011233333333333444555554433333221
Q ss_pred ceeeccce----e-cCCCCcEEEEEcCCCCEEEEEec----------CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCC
Q 003356 245 AEFIKIDK----E-LGSGDAVCASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGP 309 (827)
Q Consensus 245 ~~~~~~~~----~-~~h~~~v~va~sp~~~lla~g~~----------dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~ 309 (827)
|....... + ..... .++++|+++.+.+... +++|.+.|..+ .+.+.++.. .+.
T Consensus 304 ~~~~~~~~i~~g~~p~g~~--~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~v---------g~~ 371 (426)
T 3c75_H 304 IEALTEAERADDWRPGGWQ--QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIEL---------GHE 371 (426)
T ss_dssp EESSCTTTGGGTEEECSSS--CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE---------EEE
T ss_pred eeeccccccccccccCCce--eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEEC---------CCC
Confidence 11110000 0 11111 2689999887777643 35799999988 788887765 224
Q ss_pred eEEEEECCCCC-EEEEEE-cCCcEEEEeccCCeeEEEe
Q 003356 310 VSCIAWTPDNS-AFAVGW-KSRGLTVWSVSGCRLMSTI 345 (827)
Q Consensus 310 V~~l~~spDg~-~Lasg~-~Dg~v~vWs~~~~~l~~tl 345 (827)
...++|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 372 P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 372 IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 78999999999 888888 5899999999999998887
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.76 E-value=2.7e-07 Score=96.31 Aligned_cols=181 Identities=12% Similarity=0.080 Sum_probs=119.1
Q ss_pred CCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCC-CCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEE
Q 003356 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 344 (827)
Q Consensus 266 p~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~-~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~t 344 (827)
..+++|++++.|+.|.+||..+ ++.+.++.. +. ..+.++.++|||++|++ .++.|..||. +++.+.+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~--------~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~ 70 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDT-KEIVWEYPL--------EKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWN 70 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTT-TEEEEEEEC--------CTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCC-CeEEEEeCC--------CccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEE
Confidence 3568999999999999999877 777777766 44 46899999999999983 4688999999 6777777
Q ss_pred eccccccceeeeeecCCCCCCccceeecc----eeEEEccCCceEEEEecC-----CcceE--EEEec-ceeeeecccCC
Q 003356 345 IRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEG-----SSERV--LIFSF-GKCCLNRGVSG 412 (827)
Q Consensus 345 l~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~i~~W~~~~~~l~~~~~~-----~~~~v--~~~~~-~~~~~s~~~d~ 412 (827)
+..+....+.++.+.+++ ..+++.. .+..+++++..++..-.. +.... ..+.. ++.+++...++
T Consensus 71 ~~~~~~~~~~~~~~~~dG----~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~ 146 (276)
T 3no2_A 71 IAAPAGCEMQTARILPDG----NALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS 146 (276)
T ss_dssp EECCTTCEEEEEEECTTS----CEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred EcCCCCccccccEECCCC----CEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence 765423457788888888 6666432 566667755554443211 00011 11222 44444444444
Q ss_pred CeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe
Q 003356 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~ 484 (827)
.+..++ .. -..+|+. ... ....++.+.++|+.+++++.++.+ .+|..||+
T Consensus 147 ~v~~~d------------~~--G~~~w~~-------~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 147 EVREIA------------PN--GQLLNSV-------KLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp EEEEEC------------TT--SCEEEEE-------ECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred EEEEEC------------CC--CCEEEEE-------ECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 444433 22 2234532 111 234567889999999988888878 99999886
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.76 E-value=7.2e-07 Score=93.76 Aligned_cols=188 Identities=12% Similarity=0.036 Sum_probs=118.6
Q ss_pred EEEEcCCCC-EEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC
Q 003356 261 CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 261 ~va~sp~~~-lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~ 339 (827)
.++|+|+++ +++++..++.|..|+... + ...+.. +.+.+.+++++|||+++++...+++|.+|+..++
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~-~--~~~~~~--------~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDG-Q--LSPEMH--------PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTS-C--EEEEES--------SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCC-C--eEEEEC--------CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 489999998 888999999999999876 3 555555 6778999999999998888877789999999766
Q ss_pred eeEEEecc---ccccceeeeeecCCCCCCccceee----cc----------------eeEEEccCCceEEEEecCCcceE
Q 003356 340 RLMSTIRQ---ISLSSISSPIVKPNQDCKYEPLMS----GT----------------SMMQWDEYGYRLYAIEEGSSERV 396 (827)
Q Consensus 340 ~l~~tl~~---~~~~~v~s~~~sp~~~~~~~~l~s----g~----------------~i~~W~~~~~~l~~~~~~~~~~v 396 (827)
+....... .....+..++++|++ ..+++ |. .+..++.. +++.... .+....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G----~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~ 174 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDG----SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI-RDRVKP 174 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTS----CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE-CCCSSE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCC----CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee-cCCCCC
Confidence 64332221 112345678899988 77774 22 34444544 3333222 222222
Q ss_pred --EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCC
Q 003356 397 --LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (827)
Q Consensus 397 --~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~d 473 (827)
.++++ ++.+++.+.++.+..|++.. ...+. .. ...+..+...+..++++++|+..++. +
T Consensus 175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~-~g~~~------------~~---~~~~~~~~~~p~~i~~d~~G~l~v~~--~ 236 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTGDNATHRYCLNA-RGETE------------YQ---GVHFTVEPGKTDGLRVDAGGLIWASA--G 236 (296)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECS-SSCEE------------EE---EEEECCSSSCCCSEEEBTTSCEEEEE--T
T ss_pred ccEEECCCCCEEEEeCCCCeEEEEEECC-CCcCc------------CC---CeEeeCCCCCCCeEEECCCCCEEEEc--C
Confidence 45555 55555555566666666531 11100 00 01111133445679999999866555 5
Q ss_pred ceE-EEEcCCC
Q 003356 474 GLI-LYDIRQK 483 (827)
Q Consensus 474 g~i-iwd~~t~ 483 (827)
+.+ +||...+
T Consensus 237 ~~v~~~~~~g~ 247 (296)
T 3e5z_A 237 DGVHVLTPDGD 247 (296)
T ss_dssp TEEEEECTTSC
T ss_pred CeEEEECCCCC
Confidence 556 9998744
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.72 E-value=8.8e-06 Score=84.87 Aligned_cols=228 Identities=7% Similarity=0.002 Sum_probs=128.9
Q ss_pred EEeCCcEEEEeeccCccccceeecccee----cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecC
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~ 300 (827)
+.++|+++++...++.+..++.. .+.. ..+...+. +++++++++.++...++.|..|+.+. + ...+...
T Consensus 22 ~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~-~~~~~~~-- 95 (299)
T 2z2n_A 22 VSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG--I-IKEYTLP-- 95 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS--C-EEEEECS--
T ss_pred ECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC--c-EEEEeCC--
Confidence 45666666554444445555433 1111 11223444 99999999888877789999998652 2 2333220
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEE-EeccccccceeeeeecCCCCCCccceeec---ceeE
Q 003356 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS-TIRQISLSSISSPIVKPNQDCKYEPLMSG---TSMM 376 (827)
Q Consensus 301 ~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~-tl~~~~~~~v~s~~~sp~~~~~~~~l~sg---~~i~ 376 (827)
.....+.++++.|||++.++...++.|.+|+. ++.... .+... ...+..+++++++ ..+++. ..+.
T Consensus 96 ----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-~~~~~~i~~~~~g----~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 96 ----NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK-GSYPSFITLGSDN----ALWFTENQNNAIG 165 (299)
T ss_dssp ----STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTS----CEEEEETTTTEEE
T ss_pred ----CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC-CCCCceEEEcCCC----CEEEEeCCCCEEE
Confidence 13456899999999998888877889999999 443332 22222 3457788888887 666643 2667
Q ss_pred EEccCCceEEEE-ecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcE
Q 003356 377 QWDEYGYRLYAI-EEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (827)
Q Consensus 377 ~W~~~~~~l~~~-~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I 455 (827)
.|+. ++++... .......+..+.+ ..++. +|........+..+.. +.. ...+..+ .+...+
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~-------~~~g~--l~v~~~~~~~i~~~~~-~g~---~~~~~~~----~~~~~~ 227 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITK-------GNDDA--LWFVEIIGNKIGRITT-SGE---ITEFKIP----TPNARP 227 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEE-------CTTSS--EEEEETTTTEEEEECT-TCC---EEEEECS----STTCCE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEE-------CCCCC--EEEEccCCceEEEECC-CCc---EEEEECC----CCCCCc
Confidence 7777 4444332 1111112221111 11222 3333333444444443 111 1111112 234568
Q ss_pred EEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEee
Q 003356 456 QHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (827)
Q Consensus 456 ~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f 488 (827)
..++++++|+..++...++.+ .||. +++...+
T Consensus 228 ~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~ 260 (299)
T 2z2n_A 228 HAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEY 260 (299)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEEET-TTEEEEE
T ss_pred eeEEECCCCCEEEeccCCceEEEECC-CCceEEE
Confidence 899999999966655456666 9998 5665544
No 199
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.72 E-value=2.7e-07 Score=100.35 Aligned_cols=172 Identities=9% Similarity=0.018 Sum_probs=111.5
Q ss_pred EE-EEEcCCCCEEEEEecCCeEEEEEcCCCCc---------ceE-EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC
Q 003356 260 VC-ASIAPEQQILAVGTRRGVVELYDLAESAS---------LIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (827)
Q Consensus 260 v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~---------~~~-~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D 328 (827)
+. +++++++.++++|+.|+ +++|++++ .. ... .... +.+ |+.++| ||+.|+++ .+
T Consensus 40 ~nlLais~~~gll~a~~~~~-l~v~~~~~-l~~~~~~~~~~~~~~~~~~--------lp~-V~~l~f--d~~~L~v~-~~ 105 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSK-AVVGELQL-LRDHITSDSTPLTFKWEKE--------IPD-VIFVCF--HGDQVLVS-TR 105 (388)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHH-HHHHHHSSSCCCCCSEEEE--------CTT-EEEEEE--ETTEEEEE-ES
T ss_pred ccEEEEcCCCCEEEEeCCCE-EEEEEhhH-hhhhhccccccccceEEee--------CCC-eeEEEE--CCCEEEEE-cC
Confidence 44 99999999999999985 55698765 22 111 1112 566 999999 99999999 78
Q ss_pred CcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEec-ceeeee
Q 003356 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLN 407 (827)
Q Consensus 329 g~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s 407 (827)
++|++||+.......++..+ ...+ ..+.+ ...++.
T Consensus 106 ~~l~v~dv~sl~~~~~~~~~-~~~v-------------------------------------------~~i~~~~p~~av 141 (388)
T 1xip_A 106 NALYSLDLEELSEFRTVTSF-EKPV-------------------------------------------FQLKNVNNTLVI 141 (388)
T ss_dssp SEEEEEESSSTTCEEEEEEC-SSCE-------------------------------------------EEEEECSSEEEE
T ss_pred CcEEEEEchhhhccCcccee-ecce-------------------------------------------eeEEecCCCEEE
Confidence 99999999765433222222 0000 01111 112556
Q ss_pred cccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcCCCe--
Q 003356 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK-- 484 (827)
Q Consensus 408 ~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~t~~-- 484 (827)
+..||++.+|++..+... + +...|++++|||+| +++|..||.+ +|+..++.
T Consensus 142 ~~~dG~L~v~dl~~~~~~-------------------~-----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~ 195 (388)
T 1xip_A 142 LNSVNDLSALDLRTKSTK-------------------Q-----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEME 195 (388)
T ss_dssp EETTSEEEEEETTTCCEE-------------------E-----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEE
T ss_pred EECCCCEEEEEccCCccc-------------------c-----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcccc
Confidence 677888888876433220 0 12369999999999 7889999999 99998887
Q ss_pred -EEeeCCcc--ce---EEEEEEEEEEeCCEEEEEEEe
Q 003356 485 -WRVFGDIT--QE---QKIQSKGLLWLGKIIVVCNYI 515 (827)
Q Consensus 485 -w~~f~~~~--~e---~~~~v~gl~W~~~~li~~~~~ 515 (827)
-+.+.... +| .+..|.+++|..+......|.
T Consensus 196 ~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 196 KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred ccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 33442111 11 247799999996644444444
No 200
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.72 E-value=5e-07 Score=96.86 Aligned_cols=237 Identities=8% Similarity=-0.027 Sum_probs=134.5
Q ss_pred EEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEe-cCcEEEEEEEEecCce
Q 003356 25 IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKS 102 (827)
Q Consensus 25 v~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t-~dg~l~l~~v~~~~~~ 102 (827)
+++ .+++++++. .+++|.+||.. ....+..+. ..+....++++||| .++++. .++.|.+||+.+....
T Consensus 49 i~~-~~~~lyv~~~~~~~v~viD~~-t~~~~~~i~-------~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 49 MVI-RDGIGWIVVNNSHVIFAIDIN-TFKEVGRIT-------GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp EEE-ETTEEEEEEGGGTEEEEEETT-TCCEEEEEE-------CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEE
T ss_pred EEE-ECCEEEEEEcCCCEEEEEECc-ccEEEEEcC-------CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEE
Confidence 445 356666666 46899999994 666666552 12445689999999 566666 7899999987533211
Q ss_pred eecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec--CCcEEEEecCCccCcceeecccCCCCcccc
Q 003356 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (827)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~--dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~ 180 (827)
. .+.+ ... .+.......++.+++.++++.. ++.|.+++.........
T Consensus 119 ~-------------~i~~--g~~---~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~------------- 167 (328)
T 3dsm_A 119 G-------------YIEC--PDM---DMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDE------------- 167 (328)
T ss_dssp E-------------EEEC--TTC---CTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEE-------------
T ss_pred E-------------EEEc--CCc---cccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEE-------------
Confidence 1 0100 000 0000011122225677777763 67777765542211100
Q ss_pred eecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeecc----------Cccccceeecc
Q 003356 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK----------KGLKLAEFIKI 250 (827)
Q Consensus 181 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~----------~~~~~~~~~~~ 250 (827)
+ ...... ..+.+++||++++++..+ ..+..+|..+.
T Consensus 168 -i--------------------------------~~g~~p-~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~ 213 (328)
T 3dsm_A 168 -L--------------------------------TIGIQP-TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF 213 (328)
T ss_dssp -E--------------------------------ECSSCB-CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT
T ss_pred -E--------------------------------EcCCCc-cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC
Confidence 0 000000 113356777777665543 44555554433
Q ss_pred cee----cC-CCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEE
Q 003356 251 DKE----LG-SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAV 324 (827)
Q Consensus 251 ~~~----~~-h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Las 324 (827)
+.. .. -..+..++++|+++.+.++.. +|.+||..+ ++....... ..+......++++| +|++.++
T Consensus 214 ~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t-~~~~~~~~~------~~~~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 214 TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEA-DRVPVRPFL------EFRDTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp EEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTC-SSCCSSCSB------CCCSSCEEEEEECTTTCCEEEE
T ss_pred eEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCC-Cceeeeeee------cCCCCceEEEEEcCCCCeEEEE
Confidence 221 11 123445999999998887654 889999876 443210000 01235678999999 5666666
Q ss_pred E----EcCCcEEEEeccCCeeEEEec
Q 003356 325 G----WKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 325 g----~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
. ..++.|.+||.. ++++.++.
T Consensus 285 ~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 285 DAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp ECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred cccccccCCEEEEECCC-CCEEEEEE
Confidence 6 567899999998 66666664
No 201
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.70 E-value=4e-07 Score=98.93 Aligned_cols=88 Identities=19% Similarity=0.139 Sum_probs=65.9
Q ss_pred CCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEE
Q 003356 255 GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (827)
Q Consensus 255 ~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~v 333 (827)
.+.. +. ++| |+++|+++ .+|.|++||+.+ ......... |..+|.++.+.+.. +|++..||++.+
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s-l~~~~~~~~--------~~~~v~~i~~~~p~--~av~~~dG~L~v 150 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE-LSEFRTVTS--------FEKPVFQLKNVNNT--LVILNSVNDLSA 150 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS-TTCEEEEEE--------CSSCEEEEEECSSE--EEEEETTSEEEE
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh-hhccCccce--------eecceeeEEecCCC--EEEEECCCCEEE
Confidence 3455 65 999 99999999 899999999987 444445555 77789998888753 888999999999
Q ss_pred EeccCCeeEEEeccccccceeeeeecCCC
Q 003356 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 334 Ws~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
|++.++.... + ...|++++|+|+|
T Consensus 151 ~dl~~~~~~~-~----~~~Vs~v~WSpkG 174 (388)
T 1xip_A 151 LDLRTKSTKQ-L----AQNVTSFDVTNSQ 174 (388)
T ss_dssp EETTTCCEEE-E----EESEEEEEECSSE
T ss_pred EEccCCcccc-c----cCCceEEEEcCCc
Confidence 9998776542 1 2345666666554
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.70 E-value=5.8e-06 Score=87.19 Aligned_cols=102 Identities=9% Similarity=0.074 Sum_probs=68.5
Q ss_pred eCCc-EEEEeeccCccccceee-ccc-----e---ecCCC-CcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEE
Q 003356 228 SNGQ-LMSCSVSKKGLKLAEFI-KID-----K---ELGSG-DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (827)
Q Consensus 228 ~dG~-~~~~~~~~~~~~~~~~~-~~~-----~---~~~h~-~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l 295 (827)
+||+ ++++...++.+..|+.. .++ . ..++. .... ++++++|++.++...++.|.+|+.++ ++.+..+
T Consensus 185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~ 263 (314)
T 1pjx_A 185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRI 263 (314)
T ss_dssp SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEE
T ss_pred CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-CcEeEEE
Confidence 6664 33433344556666543 111 1 12232 3344 99999999998888899999999875 5556666
Q ss_pred EeecCCCCCCCCCCeEEEEECCCCCEEEE-EEcCCcEEEEeccC
Q 003356 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKSRGLTVWSVSG 338 (827)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spDg~~Las-g~~Dg~v~vWs~~~ 338 (827)
.. +...+.+++|+|||+.|.+ ...++.|..|++..
T Consensus 264 ~~--------~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 264 RC--------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EC--------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eC--------CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 55 5577999999999995554 44567899998764
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.68 E-value=6.6e-06 Score=85.86 Aligned_cols=230 Identities=7% Similarity=0.011 Sum_probs=127.7
Q ss_pred eEEEEEecceEEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 003356 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (827)
Q Consensus 23 ~vv~fspdg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~ 101 (827)
.-++++++|+++++. ..++|.+|+.. .. +..+... .......++++.|+|+..++...++.|..|+.. +..
T Consensus 23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~--~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHKANKISSLDQS-GR--IKEFEVP----TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SC--EEEEECS----STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred ceeeECCCCCEEEEcCCCCeEEEECCC-Cc--eEEEECC----CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 347889999988777 46889999974 22 2222211 123456789999999877766667888888754 221
Q ss_pred eeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCC-CeEEEEec-CCcEEEEecCCccCcceeecccCCCCccc
Q 003356 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (827)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~-~~llv~t~-dg~i~~~~w~~~~~~~~~l~~~p~~~~~i 179 (827)
.... .......+.+++.+. ..+++++. ++.+.+++.++... ...
T Consensus 95 ~~~~----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~-~~~----------- 140 (300)
T 2qc5_A 95 TEYP----------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIY-EYD----------- 140 (300)
T ss_dssp EEEE----------------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEE-EEE-----------
T ss_pred EEec----------------------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEE-Ecc-----------
Confidence 1000 000012233444332 34555554 66776654431110 000
Q ss_pred ceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccce--e--cC
Q 003356 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--E--LG 255 (827)
Q Consensus 180 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~--~--~~ 255 (827)
.......+..+. +.++|+++++....+.+..++. ..+. . ..
T Consensus 141 ------------------------~~~~~~~~~~i~----------~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~ 185 (300)
T 2qc5_A 141 ------------------------LPNKGSYPAFIT----------LGSDNALWFTENQNNSIGRITN-TGKLEEYPLPT 185 (300)
T ss_dssp ------------------------CSSTTCCEEEEE----------ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred ------------------------CCCCCCCceeEE----------ECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCC
Confidence 000112244444 3444554443332333333332 1110 1 12
Q ss_pred CC-CcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEE
Q 003356 256 SG-DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (827)
Q Consensus 256 h~-~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vW 334 (827)
+. .+..+++++++.+.++...++.|.+|+. + +.... ... ..+...+.+++++++|++.++...++.|..+
T Consensus 186 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~-g~~~~-~~~------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 256 (300)
T 2qc5_A 186 NAAAPVGITSGNDGALWFVEIMGNKIGRITT-T-GEISE-YDI------PTPNARPHAITAGKNSEIWFTEWGANQIGRI 256 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-T-CCEEE-EEC------SSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred CCCCcceEEECCCCCEEEEccCCCEEEEEcC-C-CcEEE-EEC------CCCCCCceEEEECCCCCEEEeccCCCeEEEE
Confidence 22 3344999999998887777788999987 3 33322 221 0145568999999999977777677899999
Q ss_pred eccC
Q 003356 335 SVSG 338 (827)
Q Consensus 335 s~~~ 338 (827)
+..+
T Consensus 257 ~~~g 260 (300)
T 2qc5_A 257 TNDN 260 (300)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 9854
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.66 E-value=3.3e-05 Score=84.09 Aligned_cols=293 Identities=10% Similarity=-0.017 Sum_probs=157.1
Q ss_pred EEEecceEEEEEc--c-C---eEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEec----------Cc
Q 003356 26 YFKVNNGLLLIAS--P-C---HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SL 89 (827)
Q Consensus 26 ~fspdg~lla~~~--~-~---~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~----------dg 89 (827)
...||++.+-++. . + +|.++|.. .+..+.... . .++ -.+++||||++++++.. ++
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~-t~~~~~~i~-~-----g~~--p~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAG-SGSILGHVN-G-----GFL--PNPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECC-CCeEEEEec-C-----CCC--CCeEECCCCCEEEEEeccccccccCCCCC
Confidence 4568887544442 2 2 88999985 555544322 1 123 39999999999999873 57
Q ss_pred EEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec--CCcEEEEecCCccCcce
Q 003356 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAF 167 (827)
Q Consensus 90 ~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~--dg~i~~~~w~~~~~~~~ 167 (827)
.|.+||+.+..... .+.+.-..+. ..+....-..+++|+++++++.. ++.|.+++ +..+.. .
T Consensus 98 ~v~viD~~t~~~~~-------------~i~~~~~~~~-~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~-~ 161 (373)
T 2mad_H 98 YVEVFDPVTFLPIA-------------DIELPDAPRF-DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD-D 161 (373)
T ss_pred eEEEEECCCCcEEE-------------EEECCCcccc-ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE-e
Confidence 89999986433211 1100000000 00111223467889999999874 46788775 422110 0
Q ss_pred eecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCcccccee
Q 003356 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF 247 (827)
Q Consensus 168 ~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~ 247 (827)
. .++ -..++ .+ +......++.+++||+++++.. .+... +..
T Consensus 162 ~------------~i~-----------------------~~~~~-~~-~~~~~~~~~~~~~dg~~~~vd~-~g~~~-~~~ 202 (373)
T 2mad_H 162 Q------------LLS-----------------------SPTCY-HI-HPGAPSTFYLLCAQGGLAKTDH-AGGAA-GAG 202 (373)
T ss_pred E------------EcC-----------------------CCceE-EE-EeCCCceEEEEcCCCCEEEEEC-CCcEE-EEE
Confidence 0 000 00011 00 1111234456677888777665 43322 111
Q ss_pred eccceecCCCCc-EEEEEcCCCCEEEEEecCCeEEEEEcCCCC-cceEEEEeecCC--CCCCCCCCeEEEEECCCCCEEE
Q 003356 248 IKIDKELGSGDA-VCASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWG--YSMDDTGPVSCIAWTPDNSAFA 323 (827)
Q Consensus 248 ~~~~~~~~h~~~-v~va~sp~~~lla~g~~dg~v~vw~~~~~~-~~~~~l~~~~~~--~~~~h~~~V~~l~~spDg~~La 323 (827)
.......+.... ...++.+++..++..+.++.+.+.|+.... ..+..+...... ...-..+....++++|||+.|.
T Consensus 203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly 282 (373)
T 2mad_H 203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY 282 (373)
T ss_pred eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence 000000111111 124566666555555578899998886511 122222210000 0000133455688999999887
Q ss_pred EEEc----------CCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCcc-ceeec----ceeEEEccCCceEEEE
Q 003356 324 VGWK----------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLMSG----TSMMQWDEYGYRLYAI 388 (827)
Q Consensus 324 sg~~----------Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~-~l~sg----~~i~~W~~~~~~l~~~ 388 (827)
++.. ++.|.+.|+.+++.+.++... ....+++|+|++ . .+..+ ..+.++|..+++....
T Consensus 283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg----~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDG----GPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCC----CeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 7653 357999999999998888643 246788899988 4 33322 1666777777766655
No 205
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.65 E-value=4.1e-06 Score=89.65 Aligned_cols=224 Identities=6% Similarity=-0.014 Sum_probs=134.5
Q ss_pred eCCcEEEEeeccCccccceeecccee---cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCC
Q 003356 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (827)
Q Consensus 228 ~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~ 304 (827)
.+++++++...++++.++|..+.+.. .....+..+++++++++.++...++.|.+||..+ .+....+.... ..
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~g~---~~ 127 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-YEITGYIECPD---MD 127 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-TEEEEEEECTT---CC
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-CeEEEEEEcCC---cc
Confidence 46677777666677777777655432 2333444599999996666655899999999987 66666665411 00
Q ss_pred CCCCCeEEEEECCCCCEEEEEE-cCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeec-----------
Q 003356 305 DDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG----------- 372 (827)
Q Consensus 305 ~h~~~V~~l~~spDg~~Lasg~-~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg----------- 372 (827)
+.......+++ .+++++++.+ .+++|.++|..+++...++... .....++++|++ ..+++.
T Consensus 128 ~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG----~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 128 MESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYN----KMWTITDGGYEGSPYGY 200 (328)
T ss_dssp TTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTS----EEEEEBCCBCTTCSSCB
T ss_pred ccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCC----CEEEEECCCccCCcccc
Confidence 11124456777 4555555555 4899999999999888777643 235678888887 555433
Q ss_pred --ceeEEEccCCceEEEEecC---CcceEEEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeece
Q 003356 373 --TSMMQWDEYGYRLYAIEEG---SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (827)
Q Consensus 373 --~~i~~W~~~~~~l~~~~~~---~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~ 446 (827)
..+..+++.++++...+.- ....-+++++ ++.+...+. .+..++...+.- ...
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~-------------------~~~ 259 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV-------------------PVR 259 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC-------------------CSS
T ss_pred CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce-------------------eee
Confidence 2477888888877655432 1122255555 444433322 343333211110 000
Q ss_pred eecc-CCCcEEEEEEcCCCCEEEEEe-----CCceE-EEEcCCCe
Q 003356 447 SYIS-QNWPVQHVAASKDGMFLAVAG-----LHGLI-LYDIRQKK 484 (827)
Q Consensus 447 ~~~~-~~~~I~~va~SpdG~~lavag-----~dg~i-iwd~~t~~ 484 (827)
.+.. +......++++|++..+.++. .++.+ +||.. |+
T Consensus 260 ~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 260 PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 1111 134578899999655555554 67888 99987 54
No 206
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.62 E-value=2e-06 Score=99.05 Aligned_cols=191 Identities=13% Similarity=0.077 Sum_probs=119.9
Q ss_pred EcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc--CCee
Q 003356 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--GCRL 341 (827)
Q Consensus 264 ~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~--~~~l 341 (827)
.+|++.++++...+++|.++|..+ ++.+.++.. ...+..+.|||||+++.+++.|+.|.+||+. +++.
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t-~~v~~~i~~---------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~ 232 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGST-YEIKTVLDT---------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT 232 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTT-CCEEEEEEC---------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE
T ss_pred cCCCceEEEEeCCCCeEEEEECCC-CeEEEEEeC---------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE
Confidence 345566777778899999999988 777777764 3356799999999999999999999999995 7777
Q ss_pred EEEeccccccceeeeeec----CCCCCCccceeecc----eeEEEccCCceEEEEecCCc----------c-eEEEEecc
Q 003356 342 MSTIRQISLSSISSPIVK----PNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSS----------E-RVLIFSFG 402 (827)
Q Consensus 342 ~~tl~~~~~~~v~s~~~s----p~~~~~~~~l~sg~----~i~~W~~~~~~l~~~~~~~~----------~-~v~~~~~~ 402 (827)
+.++... .....++|+ |++ ..+..+. ++.++|..+.+.+....-.. . ++..+
T Consensus 233 v~~i~~G--~~P~~ia~s~~~~pDG----k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i--- 303 (567)
T 1qks_A 233 VAEIKIG--SEARSIETSKMEGWED----KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI--- 303 (567)
T ss_dssp EEEEECC--SEEEEEEECCSTTCTT----TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE---
T ss_pred eEEEecC--CCCceeEEccccCCCC----CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE---
Confidence 7777653 235678899 688 5554433 67788888888776543110 1 22111
Q ss_pred eeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEe-CCceE-EEEc
Q 003356 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDI 480 (827)
Q Consensus 403 ~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag-~dg~i-iwd~ 480 (827)
..+.++...+.. .....++.+..-.+..... .+..........+.|+|||++++++. .++.+ ++|+
T Consensus 304 ----~~s~~~~~~vv~-~~~~g~v~~vd~~~~~~~~-------v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 304 ----LASHYRPEFIVN-VKETGKILLVDYTDLNNLK-------TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp ----EECSSSSEEEEE-ETTTTEEEEEETTCSSEEE-------EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred ----EEcCCCCEEEEE-ecCCCeEEEEecCCCccce-------eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 111222111111 1122233332222111100 01112223466889999999998876 45667 9999
Q ss_pred CCCeE
Q 003356 481 RQKKW 485 (827)
Q Consensus 481 ~t~~w 485 (827)
.+++-
T Consensus 372 ~t~kl 376 (567)
T 1qks_A 372 KEGKL 376 (567)
T ss_dssp TTTEE
T ss_pred CCCcE
Confidence 99863
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.60 E-value=9.7e-06 Score=87.73 Aligned_cols=291 Identities=11% Similarity=0.067 Sum_probs=169.9
Q ss_pred EEEEecceEEEEE-c-----cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEe----------cC
Q 003356 25 IYFKVNNGLLLIA-S-----PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT----------SS 88 (827)
Q Consensus 25 v~fspdg~lla~~-~-----~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t----------~d 88 (827)
+...||++.+-+. . +++|.+.|.. ....+....- ..++ .+++||||++++++. .+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~-t~~v~~~I~v------G~~P--~va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGE-AGRVIGMIDG------GFLP--NPVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETT-TTEEEEEEEE------CSSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECC-CCeEEEEEEC------CCCC--cEEECCCCCEEEEEcccccccccCCCC
Confidence 3467898755444 2 4689999995 6666665531 1233 599999999999986 35
Q ss_pred cEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec--CCcEEEEecCCccCcc
Q 003356 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGA 166 (827)
Q Consensus 89 g~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~--dg~i~~~~w~~~~~~~ 166 (827)
++|.+||..+... +..+.+....+. ..+....-..+++|+++++++.. ++.+.+++....+..
T Consensus 109 ~~VsviD~~t~~v-------------~~~I~v~~g~r~-~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv- 173 (386)
T 3sjl_D 109 DYVEVFDPVTLLP-------------TADIELPDAPRF-LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK- 173 (386)
T ss_dssp EEEEEECTTTCCE-------------EEEEEETTCCCC-CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE-
T ss_pred CEEEEEECCCCeE-------------EEEEECCCcccc-ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE-
Confidence 7899999764331 111111000000 00112223478899999999874 577877655432211
Q ss_pred eeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeecc-Cccccc
Q 003356 167 FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLA 245 (827)
Q Consensus 167 ~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~-~~~~~~ 245 (827)
..++ . ..+ ...+......++.+++||+++.+...+ +.+.
T Consensus 174 -------------~tI~--------------------v---~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-- 213 (386)
T 3sjl_D 174 -------------RMLD--------------------V---PDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE-- 213 (386)
T ss_dssp -------------EEEE--------------------C---CSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCE--
T ss_pred -------------EEEE--------------------C---CCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEE--
Confidence 1100 0 000 112333445677889999988887654 4441
Q ss_pred eeeccceecCCCCcEE--EEE-cCCCCEEEEEecCCeEEEEEcCCCC-cceEEEEee-----cCCCCCCCCCCeEEEEEC
Q 003356 246 EFIKIDKELGSGDAVC--ASI-APEQQILAVGTRRGVVELYDLAESA-SLIRTVSLY-----DWGYSMDDTGPVSCIAWT 316 (827)
Q Consensus 246 ~~~~~~~~~~h~~~v~--va~-sp~~~lla~g~~dg~v~vw~~~~~~-~~~~~l~~~-----~~~~~~~h~~~V~~l~~s 316 (827)
+... ..+..-...+. .+| .++|+++. .+.+|+|.+.|..... .....+... +.+. ..+....++++
T Consensus 214 ~~~~-~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~---~p~g~q~~a~~ 288 (386)
T 3sjl_D 214 ITHT-EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW---RPGGWQQVAYH 288 (386)
T ss_dssp EEEC-CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE---EECSSSCEEEE
T ss_pred Eeec-ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccc---cCCCcceeeEC
Confidence 1111 11100111221 355 46786554 5668999999986522 223333200 0000 23345568889
Q ss_pred CCCCEEEEEEc----------CCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCcc-ceee--c--ceeEEEccC
Q 003356 317 PDNSAFAVGWK----------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLMS--G--TSMMQWDEY 381 (827)
Q Consensus 317 pDg~~Lasg~~----------Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~-~l~s--g--~~i~~W~~~ 381 (827)
||++.|.+... .+.|.+.|+.+++.+.++.-. ..+.++++++++ . .+.. + ..+.++|..
T Consensus 289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~----~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDE----KPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSS----SCEEEEEETTTTEEEEEETT
T ss_pred CCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCC----CeEEEEEcCCCCeEEEEECC
Confidence 99998888753 246999999999998887653 357889999998 4 2322 1 267788888
Q ss_pred CceEEEEec
Q 003356 382 GYRLYAIEE 390 (827)
Q Consensus 382 ~~~l~~~~~ 390 (827)
+++.+..+.
T Consensus 363 t~k~~~~i~ 371 (386)
T 3sjl_D 363 SGEELRSVN 371 (386)
T ss_dssp TCCEEEEEC
T ss_pred CCcEEEEec
Confidence 888777664
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.50 E-value=1.4e-05 Score=87.99 Aligned_cols=278 Identities=13% Similarity=0.078 Sum_probs=158.4
Q ss_pred CeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEe----------cCcEEEEEEEEecCceeecCCCC
Q 003356 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT----------SSLYLHIFKVQITEKSIQIGGKQ 109 (827)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t----------~dg~l~l~~v~~~~~~~~~~~~~ 109 (827)
++|.+.|.. ....+..+.-. ..+ .+++||||++++++. .++.|.++|..+...
T Consensus 99 ~~VsVID~~-t~~vv~~I~vG------~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v-------- 161 (426)
T 3c75_H 99 TQQFVIDGS-TGRILGMTDGG------FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP-------- 161 (426)
T ss_dssp EEEEEEETT-TTEEEEEEEEC------SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE--------
T ss_pred CeEEEEECC-CCEEEEEEECC------CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE--------
Confidence 689999994 66666665321 123 899999999999987 367899998764332
Q ss_pred CCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEec--CCcEEEEecCCccCcceeecccCCCCcccceecccCC
Q 003356 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (827)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~--dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~ 187 (827)
+..+.+.-..+. ..+....-..+++|+++++++.. ++.|.+++....+... .++
T Consensus 162 -----v~~I~v~g~~r~-~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~--------------~I~---- 217 (426)
T 3c75_H 162 -----IADIELPDAPRF-LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDR--------------MLD---- 217 (426)
T ss_dssp -----EEEEEETTCCCC-CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEE--------------EEE----
T ss_pred -----EEEEECCCcccc-ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEE--------------EEE----
Confidence 111111000000 00111122367889999999874 5678877654332111 000
Q ss_pred CCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcE--EEEEc
Q 003356 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV--CASIA 265 (827)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~va~s 265 (827)
. . + . .. .+......++.+++||+++++...++.+.. ... ..+.-....+ .+++.
T Consensus 218 ----------------v-~-g-~-~~-~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~--~~~-~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 218 ----------------V-P-D-C-YH-IFPASPTVFYMNCRDGSLARVDFADGETKV--TNT-EVFHTEDELLINHPAFS 273 (426)
T ss_dssp ----------------C-C-S-E-EE-EEEEETTEEEEEETTSSEEEEECCTTCCEE--EEC-CCCSCTTSCBCSCCEEC
T ss_pred ----------------c-C-C-c-ee-eccCCCcEEEEEcCCCCEEEEECCCCcEEE--Eee-eeeccCCCceeeEeeec
Confidence 0 0 0 0 00 111112456678889998877764443321 110 1110011122 26789
Q ss_pred CCCCEEEEEecCCeEEEEEcCCCCcc--eEEEEeec-CCCCCC-CCCCeEEEEECCCCCEEEEEEc----------CCcE
Q 003356 266 PEQQILAVGTRRGVVELYDLAESASL--IRTVSLYD-WGYSMD-DTGPVSCIAWTPDNSAFAVGWK----------SRGL 331 (827)
Q Consensus 266 p~~~lla~g~~dg~v~vw~~~~~~~~--~~~l~~~~-~~~~~~-h~~~V~~l~~spDg~~Lasg~~----------Dg~v 331 (827)
++++.++.....++|.+.|... ... +..+.... .....+ ..+....++++|||..+.+... ++.|
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~-~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~V 352 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTA-EGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFV 352 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECS-SCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccC-CceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEE
Confidence 9988888778889999988865 221 11221100 000000 1122334789999997777643 3579
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCCCCCcc-ceeec----ceeEEEccCCceEEEEe
Q 003356 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLMSG----TSMMQWDEYGYRLYAIE 389 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~-~l~sg----~~i~~W~~~~~~l~~~~ 389 (827)
.+.|+.+.+.+.++.-. .....++|+|++ . .+... ..+.++|..+++.+..+
T Consensus 353 sVID~~T~kvv~~I~vg--~~P~gia~spDg----~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 353 VVLNAETGERINKIELG--HEIDSINVSQDA----EPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEETTTCCEEEEEEEE--EEECEEEECCSS----SCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEECCCCeEEEEEECC--CCcCeEEEccCC----CEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 99999999999888643 246788999988 5 33322 26777888887777664
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.49 E-value=7.2e-06 Score=86.48 Aligned_cols=227 Identities=6% Similarity=0.048 Sum_probs=118.3
Q ss_pred EEeCCcEEEE-------eeccCccccceeecccee--c-----CCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEcCCCC
Q 003356 226 LYSNGQLMSC-------SVSKKGLKLAEFIKIDKE--L-----GSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESA 289 (827)
Q Consensus 226 ~s~dG~~~~~-------~~~~~~~~~~~~~~~~~~--~-----~h~~~v~-va~sp~-~~lla~g~~dg~v~vw~~~~~~ 289 (827)
+.++|+++++ ...++.+..|+..+++.. . ++...+. ++++++ ++++++.. ++.|.+|+.+ +
T Consensus 25 ~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~--g 101 (314)
T 1pjx_A 25 FDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD--G 101 (314)
T ss_dssp ECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT--S
T ss_pred ECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC--C
Confidence 4466666665 444555655654332211 1 1333344 999999 77666554 4478888875 2
Q ss_pred cceEEE-EeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC---------------CcEEEEeccCCeeEEEeccccccce
Q 003356 290 SLIRTV-SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---------------RGLTVWSVSGCRLMSTIRQISLSSI 353 (827)
Q Consensus 290 ~~~~~l-~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D---------------g~v~vWs~~~~~l~~tl~~~~~~~v 353 (827)
+. ..+ ... ........+.+++++|||++.++...+ +.|..|+.. ++....... ....
T Consensus 102 ~~-~~~~~~~---~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~~ 174 (314)
T 1pjx_A 102 TF-EEIAKKD---SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQFP 174 (314)
T ss_dssp CE-EECCSBC---TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ESSE
T ss_pred CE-EEEEecc---CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CCCc
Confidence 32 222 110 000123458899999999988887665 567777766 433322221 2235
Q ss_pred eeeeec----CCCCCCccc-eeec---ceeEEEccC-CceE-----EEEecCCc-ceEEEEecceeeeecccCCCeeeeE
Q 003356 354 SSPIVK----PNQDCKYEP-LMSG---TSMMQWDEY-GYRL-----YAIEEGSS-ERVLIFSFGKCCLNRGVSGMTYARQ 418 (827)
Q Consensus 354 ~s~~~s----p~~~~~~~~-l~sg---~~i~~W~~~-~~~l-----~~~~~~~~-~~v~~~~~~~~~~s~~~d~~~~~w~ 418 (827)
..++++ |++ .. +++. ..+..|+.. ++++ +....++. ..... +....++ .+|.
T Consensus 175 ~~i~~~~~~d~dg----~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~-------i~~d~~G--~l~v 241 (314)
T 1pjx_A 175 NGIAVRHMNDGRP----YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG-------MDFDEDN--NLLV 241 (314)
T ss_dssp EEEEEEECTTSCE----EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE-------EEEBTTC--CEEE
T ss_pred ceEEEecccCCCC----CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCc-------eEECCCC--CEEE
Confidence 677788 776 43 2322 256667654 2321 11111111 11111 1112223 3454
Q ss_pred EEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCC-ceE-EEEcCCC
Q 003356 419 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH-GLI-LYDIRQK 483 (827)
Q Consensus 419 ~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~d-g~i-iwd~~t~ 483 (827)
...+..++..+....... ...+..+...+.+++|+|||++|++++.+ +.+ .|++.+.
T Consensus 242 ~~~~~~~i~~~d~~~g~~--------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 242 ANWGSSHIEVFGPDGGQP--------KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEETTTEEEEECTTCBSC--------SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEcCCCEEEEEcCCCCcE--------eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 444555666554321111 11122233568899999999977766554 555 9988754
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.47 E-value=8.6e-06 Score=85.68 Aligned_cols=95 Identities=8% Similarity=0.116 Sum_probs=67.4
Q ss_pred EEEcCCCCEE-EEEecCCeEEEEEcC-CCCcce--EEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 262 ASIAPEQQIL-AVGTRRGVVELYDLA-ESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 262 va~sp~~~ll-a~g~~dg~v~vw~~~-~~~~~~--~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
++|+|+++.| ++.+.++.|.+|+++ ..+... +.+.. . ..+.+....+++.+||++.++.+.++.|.+||..
T Consensus 154 i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~--~---~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 154 LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK--L---EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE--C---CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE--C---CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence 8999999866 455667899999985 213321 12211 0 0133567899999999998888888889999999
Q ss_pred CCeeEEEeccccccceeeeeec-CCC
Q 003356 338 GCRLMSTIRQISLSSISSPIVK-PNQ 362 (827)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~s-p~~ 362 (827)
+++++..+..+ ...+++++|. |++
T Consensus 229 tG~~~~~i~~p-~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 229 TGKRLQTVKLP-VDKTTSCCFGGKNY 253 (297)
T ss_dssp TCCEEEEEECS-SSBEEEEEEESGGG
T ss_pred CceEEEEEECC-CCCceEEEEeCCCC
Confidence 88877777654 3457788886 554
No 211
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.45 E-value=3.3e-06 Score=91.38 Aligned_cols=77 Identities=8% Similarity=-0.049 Sum_probs=60.0
Q ss_pred EEEcCCCCEEEEEec-C--------CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCC-EEEEEE-cCCc
Q 003356 262 ASIAPEQQILAVGTR-R--------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KSRG 330 (827)
Q Consensus 262 va~sp~~~lla~g~~-d--------g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~-~Lasg~-~Dg~ 330 (827)
++++||++.+.++.. + +.+.++|+.+ .+.+.++.. .+....++|+|||+ ++++.. .+++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~v---------g~~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISN---------GHDSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEE---------EEEECEEEECCSSSCEEEEEETTTTE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEEC---------CCCcceEEECCCCCEEEEEccCCCCe
Confidence 689999988887643 2 3566999988 777776665 22478999999998 556666 5899
Q ss_pred EEEEeccCCeeEEEeccc
Q 003356 331 LTVWSVSGCRLMSTIRQI 348 (827)
Q Consensus 331 v~vWs~~~~~l~~tl~~~ 348 (827)
|.|+|+.+++.+.++..+
T Consensus 339 VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 339 LDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEEESSSCEEEEECCCC
T ss_pred EEEEECCCCcEEEEEECC
Confidence 999999999999888643
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.44 E-value=4.2e-05 Score=79.66 Aligned_cols=227 Identities=8% Similarity=-0.022 Sum_probs=124.4
Q ss_pred EEeCCcEEEEeeccCccccceeeccce--e--cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecC
Q 003356 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK--E--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (827)
Q Consensus 226 ~s~dG~~~~~~~~~~~~~~~~~~~~~~--~--~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~ 300 (827)
+.++|+++++...++.+..++.. .+. . ........ +++++++++.++...++.|..||.. ++. ..+...
T Consensus 27 ~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~~-~~~~~~-- 100 (300)
T 2qc5_A 27 SSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK--GGF-TEYPLP-- 100 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEECS--
T ss_pred ECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC--CCe-EEecCC--
Confidence 45556655554444444444433 111 1 12223344 8999999988877778899998865 222 222221
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeec---ceeEE
Q 003356 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG---TSMMQ 377 (827)
Q Consensus 301 ~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg---~~i~~ 377 (827)
.....+.++++.++|++.++...++.|..++..+......+... ......+++.+++ ..+++. ..+..
T Consensus 101 ----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~~~i~~d~~g----~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 101 ----QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNK-GSYPAFITLGSDN----ALWFTENQNNSIGR 171 (300)
T ss_dssp ----STTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSST-TCCEEEEEECTTS----SEEEEETTTTEEEE
T ss_pred ----CCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCC-CCCceeEEECCCC----CEEEEecCCCeEEE
Confidence 12356899999999998888777789999998843322223222 3457788888877 555543 25666
Q ss_pred EccCCceEEEE-ecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEE
Q 003356 378 WDEYGYRLYAI-EEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (827)
Q Consensus 378 W~~~~~~l~~~-~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~ 456 (827)
++. +++.... .......+..+. ...++ .+|.......++..+.. +. .......+ .+...+.
T Consensus 172 ~~~-~g~~~~~~~~~~~~~~~~i~-------~d~~g--~l~v~~~~~~~i~~~~~-~g---~~~~~~~~----~~~~~~~ 233 (300)
T 2qc5_A 172 ITN-TGKLEEYPLPTNAAAPVGIT-------SGNDG--ALWFVEIMGNKIGRITT-TG---EISEYDIP----TPNARPH 233 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEE-------ECTTS--SEEEEETTTTEEEEECT-TC---CEEEEECS----STTCCEE
T ss_pred ECC-CCcEEEeeCCCCCCCcceEE-------ECCCC--CEEEEccCCCEEEEEcC-CC---cEEEEECC----CCCCCce
Confidence 766 3333221 111111121111 11222 23433334445555543 11 11111122 2334578
Q ss_pred EEEEcCCCCEEEEEeCCceE-EEEcCCCeEE
Q 003356 457 HVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (827)
Q Consensus 457 ~va~SpdG~~lavag~dg~i-iwd~~t~~w~ 486 (827)
.++++++|+..++...++.+ .||. +++..
T Consensus 234 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~ 263 (300)
T 2qc5_A 234 AITAGKNSEIWFTEWGANQIGRITN-DNTIQ 263 (300)
T ss_dssp EEEECSTTCEEEEETTTTEEEEECT-TSCEE
T ss_pred EEEECCCCCEEEeccCCCeEEEECC-CCcEE
Confidence 99999999866555455666 9987 45544
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.42 E-value=1.3e-05 Score=95.01 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=75.5
Q ss_pred EEEEeCCcEEEEeecc----Cccccceeecc----ceecCCCCcEEEEEcCCCCEEEEEe-cC---CeEEEEEcCCCCcc
Q 003356 224 FVLYSNGQLMSCSVSK----KGLKLAEFIKI----DKELGSGDAVCASIAPEQQILAVGT-RR---GVVELYDLAESASL 291 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~----~~~~~~~~~~~----~~~~~h~~~v~va~sp~~~lla~g~-~d---g~v~vw~~~~~~~~ 291 (827)
+.+++||+.++..... ..+.+++...+ ..+..+.+...-.++++++.|+.-+ .| +.|..+++++ +..
T Consensus 239 ~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~-~~~ 317 (693)
T 3iuj_A 239 ATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAAN-PGP 317 (693)
T ss_dssp EEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTS-CCG
T ss_pred EEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCC-CCc
Confidence 4478888877665542 23445554333 2234445544433666666555444 33 6788899876 332
Q ss_pred --eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC---cEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 292 --IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR---GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 292 --~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg---~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
.+.+.. |...+. .|+|+|+.|+....++ .|++|++.++.. ..+...+...+..+.+++++
T Consensus 318 ~~~~~l~~--------~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~ 382 (693)
T 3iuj_A 318 AHWRDLIP--------ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDD 382 (693)
T ss_dssp GGCEEEEC--------CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTC
T ss_pred cccEEEec--------CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCC
Confidence 345554 555555 8999999888777655 588999987643 44433223456666666665
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.41 E-value=5.2e-05 Score=83.72 Aligned_cols=245 Identities=8% Similarity=-0.042 Sum_probs=128.9
Q ss_pred EEEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCc--EEEEEEEEecC
Q 003356 24 IIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSL--YLHIFKVQITE 100 (827)
Q Consensus 24 vv~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg--~l~l~~v~~~~ 100 (827)
-++++|+|+++++-. ..+|++|+.. .+.... .... ..... ++|+||++.|+++..++ .|..|+.....
T Consensus 135 ~la~d~~g~lyv~d~~~~~I~~id~~-~g~~~~-~~~~------~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRDDPRVRLISVD-DNKVTT-VHPG------FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEETT-TTEEEE-EEET------CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred EEEEeCCCCEEEEecCCCcEEEEECC-CCEEEE-eecc------CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 388999999887764 5789999984 433222 2211 11123 99999999999998766 56555543221
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccc
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~ 180 (827)
..... ............-.++.+++..|+++..++.|.+++.+........
T Consensus 206 ~~~~~-----------------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~------------ 256 (409)
T 3hrp_A 206 APTRI-----------------GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIK------------ 256 (409)
T ss_dssp CEEEE-----------------EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEE------------
T ss_pred eeEEe-----------------eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEe------------
Confidence 10000 0000000000011244454567777766777777655432211000
Q ss_pred eecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEe-CCcEEEEeeccCccccceeeccc-eecC---
Q 003356 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKID-KELG--- 255 (827)
Q Consensus 181 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~~~~~~~~~~~~~~-~~~~--- 255 (827)
..+.... .. ..+... +++++ +|+++++......+..++..... .+.+
T Consensus 257 ~~~~~g~-----------------~~-~~P~~~----------ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~ 308 (409)
T 3hrp_A 257 QLELSGS-----------------LG-TNPGPY----------LIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSAT 308 (409)
T ss_dssp ECCCCSC-----------------CC-CSSCCE----------EEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTT
T ss_pred cccccCC-----------------CC-CCcccc----------EEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCC
Confidence 0000000 00 000002 33445 34555544444444433321100 0011
Q ss_pred -------------CCCcEEEEEcCCCCEEEEEe-cCCeEEEEEcCCCCcceEEEEee--cCCCCC-----CCCCCeEEEE
Q 003356 256 -------------SGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLY--DWGYSM-----DDTGPVSCIA 314 (827)
Q Consensus 256 -------------h~~~v~va~sp~~~lla~g~-~dg~v~vw~~~~~~~~~~~l~~~--~~~~~~-----~h~~~V~~l~ 314 (827)
...+..++++|+|++.++-+ .++.|+.|+..+ +. +.++.+. ..++.. ..-.....++
T Consensus 309 ~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~gia 386 (409)
T 3hrp_A 309 QKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDIC 386 (409)
T ss_dssp CCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred CCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEE
Confidence 12233499999999888877 889999999765 43 4444442 111110 1124578999
Q ss_pred ECCCCCEEEEEEcCCcEEEEec
Q 003356 315 WTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 315 ~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
++|||.++++-+.++.|+.+++
T Consensus 387 vd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 387 YDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECSSSEEEEEESTTCEEEEEEE
T ss_pred EcCCCCEEEEECCCCeEEEEEe
Confidence 9999998888888888887765
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.40 E-value=8.7e-06 Score=87.67 Aligned_cols=116 Identities=10% Similarity=0.049 Sum_probs=68.8
Q ss_pred EeCCcEEEEeeccCccccceeeccceecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCC----Cc-----ceE--E
Q 003356 227 YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES----AS-----LIR--T 294 (827)
Q Consensus 227 s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~----~~-----~~~--~ 294 (827)
..+|+.+.+...+++++.|. .... ++++|+++.|.++..++. ++|.++.. .. ... .
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~-----------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH-----------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIE 242 (343)
T ss_dssp EETTEECBEECTTSCEECCC-----------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred eECCEEEEeccCCCceecee-----------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceE
Confidence 34666555444454444332 1234 899999999988887763 45554320 00 000 1
Q ss_pred EEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
..+ +.+....+++++||++.++.+.++.|.+|+..+++..............++++.+++
T Consensus 243 ~~g--------~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 243 RYS--------EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG 302 (343)
T ss_dssp EEE--------ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred ecc--------cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence 112 344567799999999999999999999999944543222221112345566666654
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.36 E-value=5.9e-06 Score=98.11 Aligned_cols=236 Identities=12% Similarity=0.034 Sum_probs=125.9
Q ss_pred EEEEeCCcEEEEeecc-----CccccceeeccceecCCCCcE--E-EEEcCCCCEEEEEecCC-------------eEEE
Q 003356 224 FVLYSNGQLMSCSVSK-----KGLKLAEFIKIDKELGSGDAV--C-ASIAPEQQILAVGTRRG-------------VVEL 282 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~-----~~~~~~~~~~~~~~~~h~~~v--~-va~sp~~~lla~g~~dg-------------~v~v 282 (827)
..++|||+.++.+.+. .++++++..+++....+...+ . ++|+ |++.|+.++.+. .|++
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~ 212 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF 212 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence 3478888877765532 356677777665443222222 2 7899 999999998884 3999
Q ss_pred EEcCCCCcceEEEEeecCCCCCC-CCCCeEEEEECCCCCEEEEEEc----CCcEEEEeccCCe-eEEEeccccccceeee
Q 003356 283 YDLAESASLIRTVSLYDWGYSMD-DTGPVSCIAWTPDNSAFAVGWK----SRGLTVWSVSGCR-LMSTIRQISLSSISSP 356 (827)
Q Consensus 283 w~~~~~~~~~~~l~~~~~~~~~~-h~~~V~~l~~spDg~~Lasg~~----Dg~v~vWs~~~~~-l~~tl~~~~~~~v~s~ 356 (827)
|++.+....-..+... .. |...+.++.|||||++|+.... ++.+.+|++.++. ....+..+ ......+
T Consensus 213 ~~lgt~~~~~~~v~~~-----~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~-~~~~~~~ 286 (693)
T 3iuj_A 213 HRLGTAQEDDRLVFGA-----IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD-LDADVSL 286 (693)
T ss_dssp EETTSCGGGCEEEESC-----SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-SSSCEEE
T ss_pred EECCCCcccceEEEec-----CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-CCceEEE
Confidence 9987733222222220 11 2335788999999998865443 2479999987652 23344333 2222222
Q ss_pred eecCCCCCCccceeec------ceeEEEccCCceE--EEEecCCcceEEEEec-ceeeeecc-cCCCeeeeEEEEcCCeE
Q 003356 357 IVKPNQDCKYEPLMSG------TSMMQWDEYGYRL--YAIEEGSSERVLIFSF-GKCCLNRG-VSGMTYARQVIYGEDRL 426 (827)
Q Consensus 357 ~~sp~~~~~~~~l~sg------~~i~~W~~~~~~l--~~~~~~~~~~v~~~~~-~~~~~s~~-~d~~~~~w~~~~~~~~~ 426 (827)
+++++. ..++.. ..+..|+..++.. |..+..+...+..+++ ++.++... .++..+ +
T Consensus 287 -~~~~g~---~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~----------l 352 (693)
T 3iuj_A 287 -VDNKGS---TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATAR----------V 352 (693)
T ss_dssp -EEEETT---EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEE----------E
T ss_pred -EeccCC---EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeE----------E
Confidence 344431 222211 2556666655432 2222222222224444 44443222 222211 2
Q ss_pred EEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCC----ceE-EEEcCCCeEEee
Q 003356 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH----GLI-LYDIRQKKWRVF 488 (827)
Q Consensus 427 ~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~d----g~i-iwd~~t~~w~~f 488 (827)
.++... ....+.+..| ....+..+++++|++.++....+ +.+ .||+.+++.+.+
T Consensus 353 ~~~d~~---g~~~~~l~~p-----~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 353 EQFDYE---GKRVREVALP-----GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY 411 (693)
T ss_dssp EEECTT---SCEEEEECCS-----SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred EEEECC---CCeeEEeecC-----CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence 222111 0011112122 23456777888998887776555 677 899888876655
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.27 E-value=4.5e-05 Score=81.37 Aligned_cols=94 Identities=7% Similarity=0.075 Sum_probs=63.4
Q ss_pred EEEEcCCCCEEEEE-ecCCeEEEEEcC--CCC-cc--eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEE
Q 003356 261 CASIAPEQQILAVG-TRRGVVELYDLA--ESA-SL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (827)
Q Consensus 261 ~va~sp~~~lla~g-~~dg~v~vw~~~--~~~-~~--~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vW 334 (827)
.++|+|+++.+..+ +.++.|.+|+++ + + .. .+.+... ....+....+++.+||++.++.+.+++|.+|
T Consensus 183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~-Gl~~~~~~~~~~~-----~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~ 256 (326)
T 2ghs_A 183 SICFSPDGTTGYFVDTKVNRLMRVPLDART-GLPTGKAEVFIDS-----TGIKGGMDGSVCDAEGHIWNARWGEGAVDRY 256 (326)
T ss_dssp EEEECTTSCEEEEEETTTCEEEEEEBCTTT-CCBSSCCEEEEEC-----TTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred CeEEcCCCCEEEEEECCCCEEEEEEccccc-CCcccCceEEEEC-----CCCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence 38999999876554 557899999986 3 3 22 1222210 0134557889999999988888888899999
Q ss_pred eccCCeeEEEeccccccceeeeeec-CCC
Q 003356 335 SVSGCRLMSTIRQISLSSISSPIVK-PNQ 362 (827)
Q Consensus 335 s~~~~~l~~tl~~~~~~~v~s~~~s-p~~ 362 (827)
+.. ++.+..+..+ ...+++++|+ +++
T Consensus 257 d~~-g~~~~~i~~~-~~~~~~~af~g~d~ 283 (326)
T 2ghs_A 257 DTD-GNHIARYEVP-GKQTTCPAFIGPDA 283 (326)
T ss_dssp CTT-CCEEEEEECS-CSBEEEEEEESTTS
T ss_pred CCC-CCEEEEEECC-CCCcEEEEEecCCC
Confidence 994 5555555543 3356777776 554
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.25 E-value=4.7e-05 Score=84.07 Aligned_cols=150 Identities=11% Similarity=0.057 Sum_probs=89.2
Q ss_pred EEEEeCCcEEEEeeccCccccceeecccee---cCCCCcEEEEEcCCCCEEEEEecCC--eEEEEEcCCCCcceEEEEee
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLY 298 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~va~sp~~~lla~g~~dg--~v~vw~~~~~~~~~~~l~~~ 298 (827)
+++.++|+++++...+..++.|+....... ....... ++|+|+++.|.++..++ .|.+|+... ......+...
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~-~~~~~~~g~~ 213 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS-GWAPTRIGQL 213 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG-TTCEEEEEEC
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC-CceeEEeeec
Confidence 446678887777666667777765533221 1112222 89999999998888766 788888765 3333333110
Q ss_pred cCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEE----eccccccce--eeeeecCCCCCCccceeec
Q 003356 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST----IRQISLSSI--SSPIVKPNQDCKYEPLMSG 372 (827)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~t----l~~~~~~~v--~s~~~sp~~~~~~~~l~sg 372 (827)
.......+.+++++|++..|.++..++.|+.|+..++..... ..+. .... +.++|+|++. ..+++.
T Consensus 214 ----~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~-~~~~P~~~ia~~p~~g---~lyv~d 285 (409)
T 3hrp_A 214 ----GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS-LGTNPGPYLIYYFVDS---NFYMSD 285 (409)
T ss_dssp ----CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC-CCCSSCCEEEEETTTT---EEEEEE
T ss_pred ----cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC-CCCCccccEEEeCCCC---EEEEEe
Confidence 011335578899999544444467778899999987653221 1111 1111 2788888530 444443
Q ss_pred c---eeEEEccCCc
Q 003356 373 T---SMMQWDEYGY 383 (827)
Q Consensus 373 ~---~i~~W~~~~~ 383 (827)
. .+..|+.++.
T Consensus 286 ~~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 286 QNLSSVYKITPDGE 299 (409)
T ss_dssp TTTTEEEEECTTCC
T ss_pred CCCCEEEEEecCCC
Confidence 2 6777777654
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.25 E-value=8.1e-05 Score=78.13 Aligned_cols=215 Identities=9% Similarity=0.009 Sum_probs=109.6
Q ss_pred CCcEEEEeeccCccccceeecccee-cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCC
Q 003356 229 NGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (827)
Q Consensus 229 dG~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h 306 (827)
+++++++....+.+..|+....+.. ......+. ++++++|+++++ . ++.|.+||.++ ++.. .+..... ...
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~-g~~~-~~~~~~~---~~~ 96 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE-QSAV-VLATVDN---DKK 96 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT-TEEE-EEEECCT---TCS
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC-CcEE-EEEecCC---CCC
Confidence 3445555444555555554432211 11223344 999999996654 3 66899999876 4432 2222100 002
Q ss_pred CCCeEEEEECCCCCEEEEEEcC---------CcEEEEeccC-CeeEEEeccccccceeeeeecCCCCCCccce-eecc--
Q 003356 307 TGPVSCIAWTPDNSAFAVGWKS---------RGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT-- 373 (827)
Q Consensus 307 ~~~V~~l~~spDg~~Lasg~~D---------g~v~vWs~~~-~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l-~sg~-- 373 (827)
...+..++++|||++.++...+ ..-++|.+.. ++..... .. ....+.++|+|++ ..+ ++..
T Consensus 97 ~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~-~~~pngi~~spdg----~~lyv~~~~~ 170 (297)
T 3g4e_A 97 NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-DQ-VDISNGLDWSLDH----KIFYYIDSLS 170 (297)
T ss_dssp SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-EE-ESBEEEEEECTTS----CEEEEEEGGG
T ss_pred CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-ec-cccccceEEcCCC----CEEEEecCCC
Confidence 3457899999999977765432 2345665542 3322222 21 2345788999987 433 3222
Q ss_pred -eeEEEcc--CCceEE-----EEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeec
Q 003356 374 -SMMQWDE--YGYRLY-----AIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (827)
Q Consensus 374 -~i~~W~~--~~~~l~-----~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p 445 (827)
.+..|+. .++.+- ........... -++...++ .+|.......++..+...... .-..+.+
T Consensus 171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~-------g~~~d~~G--~lwva~~~~~~v~~~d~~tG~--~~~~i~~- 238 (297)
T 3g4e_A 171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPD-------GMCIDAEG--KLWVACYNGGRVIRLDPVTGK--RLQTVKL- 238 (297)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEECCGGGCEEE-------EEEEBTTS--CEEEEEETTTEEEEECTTTCC--EEEEEEC-
T ss_pred CcEEEEeccCCCCcccCcEEEEECCCCCCCCC-------eeEECCCC--CEEEEEcCCCEEEEEcCCCce--EEEEEEC-
Confidence 4556654 344321 11111111110 01122233 456555556666666543111 1122222
Q ss_pred eeeccCCCcEEEEEEc-CCCCEEEEEeCC
Q 003356 446 VSYISQNWPVQHVAAS-KDGMFLAVAGLH 473 (827)
Q Consensus 446 ~~~~~~~~~I~~va~S-pdG~~lavag~d 473 (827)
+...+++++|+ ||++.|++++.+
T Consensus 239 -----p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 239 -----PVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp -----SSSBEEEEEEESGGGCEEEEEEBC
T ss_pred -----CCCCceEEEEeCCCCCEEEEEcCC
Confidence 23458999998 899988777653
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.16 E-value=0.00021 Score=76.05 Aligned_cols=216 Identities=11% Similarity=-0.011 Sum_probs=109.9
Q ss_pred EEeC-CcEEEEeeccCccccceeeccce--ecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCC
Q 003356 226 LYSN-GQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (827)
Q Consensus 226 ~s~d-G~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~ 302 (827)
++++ ++++++...++.+..|+....+. +.......+++++|+|+++++. .+ .|.+||..+ ++. ..+....
T Consensus 56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~-g~~-~~~~~~~--- 128 (326)
T 2ghs_A 56 FDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT-GVL-TLHAELE--- 128 (326)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT-CCE-EEEECSS---
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC-CcE-EEEeeCC---
Confidence 4454 44455444455555555433221 1111233348999999987754 44 488999866 443 2232210
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEEcC------CcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce-eec---
Q 003356 303 SMDDTGPVSCIAWTPDNSAFAVGWKS------RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSG--- 372 (827)
Q Consensus 303 ~~~h~~~V~~l~~spDg~~Lasg~~D------g~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l-~sg--- 372 (827)
.......+.+++++|||++.++...+ +.|..++ +++... +... ....+.++|+|++ ..+ ++.
T Consensus 129 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~-~~~~~~i~~s~dg----~~lyv~~~~~ 200 (326)
T 2ghs_A 129 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFAD-ISIPNSICFSPDG----TTGYFVDTKV 200 (326)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEE-ESSEEEEEECTTS----CEEEEEETTT
T ss_pred CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCC-CcccCCeEEcCCC----CEEEEEECCC
Confidence 00113468999999999977765432 3455555 444332 2221 2345678899987 433 222
Q ss_pred ceeEEEccC--Cc-e-----EEEEecCCcceEEEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeee
Q 003356 373 TSMMQWDEY--GY-R-----LYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL 444 (827)
Q Consensus 373 ~~i~~W~~~--~~-~-----l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~ 444 (827)
..+..|+.. ++ + .+............ +....++ .+|....+..++..+... .. .-..+.+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~g-------i~~d~~G--~lwva~~~~~~v~~~d~~-g~--~~~~i~~ 268 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG-------SVCDAEG--HIWNARWGEGAVDRYDTD-GN--HIARYEV 268 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE-------EEECTTS--CEEEEEETTTEEEEECTT-CC--EEEEEEC
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCe-------eEECCCC--CEEEEEeCCCEEEEECCC-CC--EEEEEEC
Confidence 156666653 33 2 12111111111110 1112233 456555555667666541 11 1122222
Q ss_pred ceeeccCCCcEEEEEEc-CCCCEEEEEeCCc
Q 003356 445 PVSYISQNWPVQHVAAS-KDGMFLAVAGLHG 474 (827)
Q Consensus 445 p~~~~~~~~~I~~va~S-pdG~~lavag~dg 474 (827)
+...+.+++|+ +|++.|++++.++
T Consensus 269 ------~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 269 ------PGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp ------SCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred ------CCCCcEEEEEecCCCCEEEEEecCC
Confidence 33458999998 9998887765543
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.16 E-value=0.00042 Score=72.87 Aligned_cols=67 Identities=10% Similarity=-0.037 Sum_probs=52.6
Q ss_pred EEEcCCCC-EEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC
Q 003356 262 ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 262 va~sp~~~-lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~ 339 (827)
.+|+|+++ ++.++..++.|..|+.. ++ ...+.. +.+.+..++++|||+++++...++.|.+|+..+.
T Consensus 50 p~~~~~g~~l~~~d~~~~~i~~~~~~--g~-~~~~~~--------~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~ 117 (305)
T 3dr2_A 50 PAWWEAQRTLVWSDLVGRRVLGWRED--GT-VDVLLD--------ATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQ 117 (305)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEETT--SC-EEEEEE--------SCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred CeEeCCCCEEEEEECCCCEEEEEeCC--CC-EEEEeC--------CCCccceeeECCCCCEEEEECCCCEEEEECCCCC
Confidence 78999998 77788888999999873 33 344444 5677899999999997777666688999998743
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.05 E-value=0.00021 Score=76.67 Aligned_cols=121 Identities=12% Similarity=0.018 Sum_probs=77.1
Q ss_pred EEEEeCCcEEEEeec--cCccccceeecccee---------cCCCCcEE-EEEcCCCCEEEEEec-----CCeEEEEEcC
Q 003356 224 FVLYSNGQLMSCSVS--KKGLKLAEFIKIDKE---------LGSGDAVC-ASIAPEQQILAVGTR-----RGVVELYDLA 286 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~--~~~~~~~~~~~~~~~---------~~h~~~v~-va~sp~~~lla~g~~-----dg~v~vw~~~ 286 (827)
+++++||+++++... ++..++|....++.. .++...+. +++++++++.++-.. ++.|.+||..
T Consensus 22 va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~ 101 (343)
T 2qe8_A 22 ITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL 101 (343)
T ss_dssp EEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT
T ss_pred EEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC
Confidence 457778888776432 222344544322211 12333455 999999998887654 5799999998
Q ss_pred CCCcceEEEEeecCCCCCCCCCCeEEEEECCC-CCEEEEEE---cCCcEEEEeccCCeeEEEecc
Q 003356 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGW---KSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD-g~~Lasg~---~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
+ ++.++++...... ..+...+..++++|+ |...++.. .+++|.+|+..+++....+.+
T Consensus 102 t-g~~~~~~~~~~~~--~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 102 N-NQLSRVIYLPPPI--TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp T-TEEEEEEECCTTT--SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred C-CeEEEEEECChhh--cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence 7 6666666542110 113345789999986 45556655 678999999998887766654
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.94 E-value=0.00038 Score=73.16 Aligned_cols=130 Identities=10% Similarity=0.067 Sum_probs=76.7
Q ss_pred EEEEeCCc-EEEEeeccCccccceeecc-ceecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecC
Q 003356 224 FVLYSNGQ-LMSCSVSKKGLKLAEFIKI-DKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (827)
Q Consensus 224 ~~~s~dG~-~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~ 300 (827)
.++.+||+ ++++...++.+..|+.... ..+..+..... ++++++|+++++...++.|.+|+.+ ++ ...+.....
T Consensus 50 p~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~-~~~~~~~~~ 126 (305)
T 3dr2_A 50 PAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQ-AHLLVGRYA 126 (305)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SC-EEEEECEET
T ss_pred CeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC--CC-EEEEEeccC
Confidence 44567776 5555555556666654211 11122334445 9999999988776667889999874 33 222221100
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEE----EEc-------------CCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 301 GYSMDDTGPVSCIAWTPDNSAFAV----GWK-------------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 301 ~~~~~h~~~V~~l~~spDg~~Las----g~~-------------Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+ .....+..++++|||++.++ |.. .+.|..++..+++..... + ....+.++|+|++
T Consensus 127 ~---~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~--~~~p~gl~~spdg 199 (305)
T 3dr2_A 127 G---KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D--LDHPNGLAFSPDE 199 (305)
T ss_dssp T---EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E--ESSEEEEEECTTS
T ss_pred C---CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c--CCCCcceEEcCCC
Confidence 0 01234678999999998886 321 256777777666543322 2 2345678899987
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.84 E-value=7.4e-06 Score=89.26 Aligned_cols=178 Identities=14% Similarity=0.010 Sum_probs=88.4
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 267 ~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
++..+++|+.||.|+.||..+ ++.+-.+.. +++.+..+.++|..+++++.|+.++.||..+++......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~~----------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT-GSIKWTLKE----------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT-CCEEEEEEC----------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEecC----------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 678899999999999999988 666655443 334445556788888888899999999998877665544
Q ss_pred cccccce-eeeeecCCCCCCccceeecc---eeEEEccCCceEEEEecCCcceEEEEec-ceeeeecccCCCeeeeEEEE
Q 003356 347 QISLSSI-SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIY 421 (827)
Q Consensus 347 ~~~~~~v-~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~ 421 (827)
.+....+ .++.+..+ ..+..|. .+..|+..+++..-....+. ...+.+ +..++.++.++.+..|+..+
T Consensus 77 ~~~~~~~~~sp~~~~~-----~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~t 149 (369)
T 2hz6_A 77 FTIPELVQASPCRSSD-----GILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTEYTITMYDTKT 149 (369)
T ss_dssp CCHHHHHTTCSCC----------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSS
T ss_pred ccCccccccCceEecC-----CEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecCCEEEEEECCC
Confidence 3211111 11222112 2333333 68899998777644333221 111222 44455555666666655433
Q ss_pred cCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCC---CEEEEEeCCceE-EEEcCCCe
Q 003356 422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG---MFLAVAGLHGLI-LYDIRQKK 484 (827)
Q Consensus 422 ~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG---~~lavag~dg~i-iwd~~t~~ 484 (827)
++ ..|+.- .. . ....++++++ ..+++++.||.+ .||..+|+
T Consensus 150 G~-------------~~W~~~-~~----~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 150 RE-------------LRWNAT-YF----D----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp SS-------------CCCEEE-EE----E----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CC-------------EEEeEe-cc----c----ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 32 234321 00 0 1122334432 567778899999 99999886
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.83 E-value=0.00042 Score=81.80 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=56.4
Q ss_pred EEEcCCCCEEEEEecCCe-------------------EEEEEcCCCCcceEEEEeec---CCCCCCCCCCeEEEEECCCC
Q 003356 262 ASIAPEQQILAVGTRRGV-------------------VELYDLAESASLIRTVSLYD---WGYSMDDTGPVSCIAWTPDN 319 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~-------------------v~vw~~~~~~~~~~~l~~~~---~~~~~~h~~~V~~l~~spDg 319 (827)
++++|+..++.+++.++. |..+|.++ ++.+-.++... |.+. ...+........+|
T Consensus 240 ~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T-G~~~W~~~~~~~d~wd~~--~~~~~~l~d~~~~G 316 (689)
T 1yiq_A 240 FAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT-GEYVWHYQTTPGDAWDYT--ATQHMILAELPIDG 316 (689)
T ss_dssp EEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT-CCEEEEEESSTTCCSCCC--CCSCEEEEEEEETT
T ss_pred eeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC-CceeEeeecCCccccccc--CCCCcEEEeeccCC
Confidence 789999999999998874 99999988 66655554311 1111 22333333333477
Q ss_pred C---EEEEEEcCCcEEEEeccCCeeEEE
Q 003356 320 S---AFAVGWKSRGLTVWSVSGCRLMST 344 (827)
Q Consensus 320 ~---~Lasg~~Dg~v~vWs~~~~~l~~t 344 (827)
+ .++.+..+|.+.++|..+|+++..
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 6 899999999999999999988744
No 226
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.79 E-value=0.13 Score=61.52 Aligned_cols=383 Identities=11% Similarity=0.060 Sum_probs=183.0
Q ss_pred EEEEecceEEEEEccCeEEEeecCCceeEEEEEEeCh---HhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 003356 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDS---ESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (827)
Q Consensus 25 v~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~---~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~ 101 (827)
+...++|++.+....+.|.+|+.. ... +..+.... .++ ....+.++...++|.+ .++|.+| |.+|+.....-
T Consensus 220 i~~d~~g~lwigt~~~Gl~~~~~~-~~~-~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~l-Wigt~~G-l~~~~~~~~~~ 294 (795)
T 4a2l_A 220 ILQQSPTRIWVATEGAGLFLINPK-TKE-IKNYLHSPSNPKSI-SSNYIRSLAMDSQNRL-WIGTFND-LNIYHEGTDSF 294 (795)
T ss_dssp EEEEETTEEEEEEBSSCEEEEETT-TTE-EEEECCCTTCTTSC-SCSBEEEEEECTTSCE-EEEESSC-EEEEETTTTEE
T ss_pred EEEcCCCCEEEEECCCCeEEEeCC-CCe-EEEeecCCCCcccc-CCCeEEEEEEcCCCCE-EEEeCCh-hheEcCCCCeE
Confidence 556677887765545679999874 322 22222111 111 1345678888888874 4566665 77776432211
Q ss_pred eeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCC-CeEEEEecCCcEEEEecCCccCcceeecccCCCCcccc
Q 003356 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (827)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~-~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~ 180 (827)
..+...... ...-....|.++..|. ..|.+|+.++-+..++-.........
T Consensus 295 ~~~~~~~~~----------------~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~------------ 346 (795)
T 4a2l_A 295 ASYSSNPVE----------------NGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIR------------ 346 (795)
T ss_dssp EEECCCTTS----------------TTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEEC------------
T ss_pred EEEecCCCC----------------CCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEc------------
Confidence 111100000 0011123577777776 56889998777776543211111110
Q ss_pred eecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeC-CcEEEEeeccCccccceeecccee-cCCCC
Q 003356 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKIDKE-LGSGD 258 (827)
Q Consensus 181 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~d-G~~~~~~~~~~~~~~~~~~~~~~~-~~h~~ 258 (827)
..+. .+ ......|.++..+...+ +|+..+ |-+.......+..+.+........ .-...
T Consensus 347 ~~~~--~~----------------~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (795)
T 4a2l_A 347 NIPY--KN----------------SLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSN 406 (795)
T ss_dssp CCTT--SS----------------SCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCS
T ss_pred CCCC--CC----------------CCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCc
Confidence 0000 00 00122355655333222 223222 223222111111111110000000 00123
Q ss_pred cEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 259 ~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
.+. ++..+++++|-+|+.++-+..|+..+ ++ ...+.... ..-....|.++...++|.+.+... +++.+|+..
T Consensus 407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~---~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~ 479 (795)
T 4a2l_A 407 NIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRN---SQLVNENVYAILPDGEGNLWLGTL--SALVRFNPE 479 (795)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTT---SCCSCSCEEEEEECSSSCEEEEES--SCEEEEETT
T ss_pred cEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCC---CCcCCCeeEEEEECCCCCEEEEec--CceeEEeCC
Confidence 454 77778888667788877789998765 33 22232100 001356799999999998666554 679999988
Q ss_pred CCeeEEEecc-----ccccceeeeeecCCCCCCccceeecc-eeEEEccCCceEEEEec--C----CcceEEEEecceee
Q 003356 338 GCRLMSTIRQ-----ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE--G----SSERVLIFSFGKCC 405 (827)
Q Consensus 338 ~~~l~~tl~~-----~~~~~v~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~--~----~~~~v~~~~~~~~~ 405 (827)
+++....... .....|.++...+++ ..++... .+..|+..+.+. .... . ....|.+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g----~lWigt~~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~------- 547 (795)
T 4a2l_A 480 QRSFTTIEKEKDGTPVVSKQITTLFRDSHK----RLWIGGEEGLSVFKQEGLDI-QKASILPVSNVTKLFTNC------- 547 (795)
T ss_dssp TTEEEECCBCTTCCBCCCCCEEEEEECTTC----CEEEEESSCEEEEEEETTEE-EECCCSCSCGGGGSCEEE-------
T ss_pred CCeEEEccccccccccCCceEEEEEECCCC----CEEEEeCCceEEEeCCCCeE-EEecCCCCCCCCCCeeEE-------
Confidence 7754322111 112346666666655 5544322 344555544443 1110 0 0111211
Q ss_pred eecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEcCCCeE
Q 003356 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKW 485 (827)
Q Consensus 406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~~t~~w 485 (827)
...|..-.+|.... ..++.+.... ..+........+ .+..|.++..+++|+..+ ++.+|+..||..++++
T Consensus 548 --i~~d~~g~lWigT~--~Gl~~~d~~~---~~~~~~~~~~gl--~~~~i~~i~~d~~g~lWi-~t~~Gl~~~~~~~~~~ 617 (795)
T 4a2l_A 548 --IYEASNGIIWVGTR--EGFYCFNEKD---KQIKRYNTTNGL--PNNVVYGILEDSFGRLWL-STNRGISCFNPETEKF 617 (795)
T ss_dssp --EEECTTSCEEEEES--SCEEEEETTT---TEEEEECGGGTC--SCSCEEEEEECTTSCEEE-EETTEEEEEETTTTEE
T ss_pred --EEECCCCCEEEEeC--CCceeECCCC---CcEEEeCCCCCC--chhheEEEEECCCCCEEE-EcCCceEEEcCCCCcE
Confidence 11222223343221 1344333211 111211111111 123588999999997654 5578888999999988
Q ss_pred EeeC
Q 003356 486 RVFG 489 (827)
Q Consensus 486 ~~f~ 489 (827)
+.|.
T Consensus 618 ~~~~ 621 (795)
T 4a2l_A 618 RNFT 621 (795)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 8774
No 227
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.78 E-value=0.14 Score=61.37 Aligned_cols=208 Identities=10% Similarity=0.134 Sum_probs=108.9
Q ss_pred cEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCC-CCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS-MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 259 ~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~-~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
.|. +...++|.+- +|+.++-|..|+..+ +. ...+........ .-....|.++...++|+.|-+|..++++..++.
T Consensus 358 ~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 358 VVSCIVEDKDKNLW-IGTNDGGLNLYNPIT-QR-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp SEEEEEECTTSCEE-EEESSSCEEEECTTT-CC-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred eeEEEEECCCCCEE-EEECCCCeEEEcCCC-Cc-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence 454 7777777755 477776788888765 33 222211000000 002467999999999986667777789999999
Q ss_pred cCCeeEEEecc---ccccceeeeeecCCCCCCccceeec-ceeEEEccCCceEEEEecC------CcceEEEEecceeee
Q 003356 337 SGCRLMSTIRQ---ISLSSISSPIVKPNQDCKYEPLMSG-TSMMQWDEYGYRLYAIEEG------SSERVLIFSFGKCCL 406 (827)
Q Consensus 337 ~~~~l~~tl~~---~~~~~v~s~~~sp~~~~~~~~l~sg-~~i~~W~~~~~~l~~~~~~------~~~~v~~~~~~~~~~ 406 (827)
.+++...-... .....|.++...+++ ..++.. ..+..|++.+++....... ....|.++.
T Consensus 435 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g----~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~------ 504 (795)
T 4a2l_A 435 NSGQVENFNQRNSQLVNENVYAILPDGEG----NLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLF------ 504 (795)
T ss_dssp TTCCEEEECTTTSCCSCSCEEEEEECSSS----CEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEE------
T ss_pred CCCcEEEeecCCCCcCCCeeEEEEECCCC----CEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEE------
Confidence 87754322110 112356677666655 554432 2455666665544322111 011222221
Q ss_pred ecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeee-ceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEcCCCeE
Q 003356 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL-PVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKW 485 (827)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~-p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~~t~~w 485 (827)
.|..-.+|.... ..++.+..... .+ .... +..-...+..|.++..+++|+..+ |+..|+..||..++++
T Consensus 505 ---~d~~g~lWigt~--~Gl~~~~~~~~---~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 505 ---RDSHKRLWIGGE--EGLSVFKQEGL---DI-QKASILPVSNVTKLFTNCIYEASNGIIWV-GTREGFYCFNEKDKQI 574 (795)
T ss_dssp ---ECTTCCEEEEES--SCEEEEEEETT---EE-EECCCSCSCGGGGSCEEEEEECTTSCEEE-EESSCEEEEETTTTEE
T ss_pred ---ECCCCCEEEEeC--CceEEEeCCCC---eE-EEecCCCCCCCCCCeeEEEEECCCCCEEE-EeCCCceeECCCCCcE
Confidence 112222332211 22332221110 11 1000 000011234689999999998554 4445877999999998
Q ss_pred EeeC
Q 003356 486 RVFG 489 (827)
Q Consensus 486 ~~f~ 489 (827)
+.|.
T Consensus 575 ~~~~ 578 (795)
T 4a2l_A 575 KRYN 578 (795)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8774
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.75 E-value=0.0063 Score=66.41 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=42.1
Q ss_pred EEEcCCCCEEEEEec-CCeEEEEEcCCCC--cceEEEEee-cCCCCCCC------CCCeEEEEECCCCCEEEEEE
Q 003356 262 ASIAPEQQILAVGTR-RGVVELYDLAESA--SLIRTVSLY-DWGYSMDD------TGPVSCIAWTPDNSAFAVGW 326 (827)
Q Consensus 262 va~sp~~~lla~g~~-dg~v~vw~~~~~~--~~~~~l~~~-~~~~~~~h------~~~V~~l~~spDg~~Lasg~ 326 (827)
+.+||||++|.++.. .+.|.+||+.+.. +.+..+... .+ -...| .+.-..+++||||++|.++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF-HRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTT-TCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCee-ccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 899999999888776 5799999997523 223333221 00 00001 11247899999999999887
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.65 E-value=0.00078 Score=72.72 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=55.9
Q ss_pred EEEEcCCCCEEEEEe----------cCCeEEEEEcCCCCcceEEEEeec-CCCCCCCCCCeEEEEECCCCCEEEEEEc--
Q 003356 261 CASIAPEQQILAVGT----------RRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTPDNSAFAVGWK-- 327 (827)
Q Consensus 261 ~va~sp~~~lla~g~----------~dg~v~vw~~~~~~~~~~~l~~~~-~~~~~~h~~~V~~l~~spDg~~Lasg~~-- 327 (827)
.++++||++.+.++. .+++|.+||..+ .+.+.++.... .... ....-..+++||||++|.++..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v~~~~~~~--~g~~P~~ia~SpDGk~lyVan~~~ 145 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFS--VGPRVHIIGNCASSACLLFFLFGS 145 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCC--BSCCTTSEEECTTSSCEEEEECSS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEECCCccccc--cCCCcceEEEcCCCCEEEEEccCC
Confidence 699999999999886 478999999998 78888876510 0000 0012457999999999998874
Q ss_pred CCcEEE--EeccC
Q 003356 328 SRGLTV--WSVSG 338 (827)
Q Consensus 328 Dg~v~v--Ws~~~ 338 (827)
++.+.+ +|+.+
T Consensus 146 ~~~v~V~~iD~~t 158 (368)
T 1mda_H 146 SAAAGLSVPGASD 158 (368)
T ss_dssp SCEEEEEETTTEE
T ss_pred CCeEEEEEEchhh
Confidence 357888 99876
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.63 E-value=0.0049 Score=66.56 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=57.4
Q ss_pred CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC--CCCEEEEEEcCCcEEEEeccCCeeEEEe
Q 003356 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (827)
Q Consensus 268 ~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--Dg~~Lasg~~Dg~v~vWs~~~~~l~~tl 345 (827)
+..+.+|+.+|.+..+|..+ ++.+-........... ....+..+.-+| ++..+.+++.++.+..+|..+++.....
T Consensus 188 ~~~v~~g~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQ-GQMIWQQRISQATGST-EIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp TTEEEECCTTTEEEEEETTT-CCEEEEEECCC------------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCC-CcEEEEEecccCCCCc-ccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec
Confidence 45677788899999999987 6555444321000000 000000011122 3456777778899999999888776655
Q ss_pred ccccccceeeeeecCCCCCCccceeec--ceeEEEccCCceEE
Q 003356 346 RQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLY 386 (827)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~sg--~~i~~W~~~~~~l~ 386 (827)
... ....+... ++ ..++.. ..+..++..+++..
T Consensus 266 ~~~---~~~~~~~~-~~----~l~~~~~~g~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 266 ELG---SVNDFIVD-GN----RIYLVDQNDRVMALTIDGGVTL 300 (376)
T ss_dssp CCC---CEEEEEEE-TT----EEEEEETTCCEEEEETTTCCEE
T ss_pred cCC---CCCCceEE-CC----EEEEEcCCCeEEEEECCCCcEE
Confidence 422 22333332 11 222221 26677777666543
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.59 E-value=0.048 Score=59.46 Aligned_cols=198 Identities=15% Similarity=0.090 Sum_probs=111.0
Q ss_pred EEc--CCCCEEE-EEecCCeEEEEEcCCCC---cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC------Cc
Q 003356 263 SIA--PEQQILA-VGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS------RG 330 (827)
Q Consensus 263 a~s--p~~~lla-~g~~dg~v~vw~~~~~~---~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D------g~ 330 (827)
+++ +++++|. .|..+++|.++|+.+.. +..+++...+.....+ ...-..+..+||| .++++..+ |+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPDA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSSC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeECCCe-EEEEcCCCcCCCCCCe
Confidence 445 6666555 46667899999987522 3334442100000000 0123567889999 66666555 78
Q ss_pred EEEEeccCCeeEEEecccccc--ceeeeeecCCCCCCccceee----------------------cceeEEEccCCceEE
Q 003356 331 LTVWSVSGCRLMSTIRQISLS--SISSPIVKPNQDCKYEPLMS----------------------GTSMMQWDEYGYRLY 386 (827)
Q Consensus 331 v~vWs~~~~~l~~tl~~~~~~--~v~s~~~sp~~~~~~~~l~s----------------------g~~i~~W~~~~~~l~ 386 (827)
+.+.|..+.+.+.++...... --..+.|+|++ +.+++ +.++.+|+..+.++.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~----~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN----EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT----TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCC----CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 999999999988887632111 11234557776 33332 348889999888877
Q ss_pred EEecCC-cceE---EEE--ec-ceeeeecc------cCCCeeeeEEEEcCCeEEEEecCCCCcceEEE---eeecee-ec
Q 003356 387 AIEEGS-SERV---LIF--SF-GKCCLNRG------VSGMTYARQVIYGEDRLLVVQSEDTDELKILH---LNLPVS-YI 449 (827)
Q Consensus 387 ~~~~~~-~~~v---~~~--~~-~~~~~s~~------~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~---~~~p~~-~~ 449 (827)
..+.-. .+.. +.| ++ ++.+..++ .++++.+|... + ..|+. +.++.. ..
T Consensus 242 ~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d--~-------------g~~~~~~vIdi~~~~v~ 306 (462)
T 2ece_A 242 HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE--D-------------GKWNAEKVIEIPAEPLE 306 (462)
T ss_dssp EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE--T-------------TEEEEEEEEEECCEECC
T ss_pred eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec--C-------------CceeEEEEEeCCCcccc
Confidence 766542 1111 223 44 45444333 33344333321 1 12322 223331 11
Q ss_pred c-----------CCCcEEEEEEcCCCCEEEEEeC-CceE-EEEcC
Q 003356 450 S-----------QNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIR 481 (827)
Q Consensus 450 ~-----------~~~~I~~va~SpdG~~lavag~-dg~i-iwd~~ 481 (827)
+ .......+.+|+||++|.++.+ .+.+ +||+.
T Consensus 307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 1 0123578999999999999987 4566 99985
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.58 E-value=0.021 Score=61.45 Aligned_cols=70 Identities=9% Similarity=0.074 Sum_probs=46.6
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 267 ~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
++..+.+++.++.|..+|..+ ++.+-....... ....++ . ++..+.++..++.+..+|..+++......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~----~~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~ 170 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSD-GTVAWQTKVAGE----ALSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVN 170 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTT-CCEEEEEECSSC----CCSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEEeCCCc----eEcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence 466788889999999999988 665544443110 011121 1 24467778888999999998888776654
Q ss_pred c
Q 003356 347 Q 347 (827)
Q Consensus 347 ~ 347 (827)
.
T Consensus 171 ~ 171 (376)
T 3q7m_A 171 L 171 (376)
T ss_dssp C
T ss_pred C
Confidence 3
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.57 E-value=0.0081 Score=70.60 Aligned_cols=83 Identities=16% Similarity=0.156 Sum_probs=58.3
Q ss_pred EEEcCCCCEEEEEecCC-------------------eEEEEEcCCCCcceEEEEeec---CCCCCCCCCCeEEEEECCCC
Q 003356 262 ASIAPEQQILAVGTRRG-------------------VVELYDLAESASLIRTVSLYD---WGYSMDDTGPVSCIAWTPDN 319 (827)
Q Consensus 262 va~sp~~~lla~g~~dg-------------------~v~vw~~~~~~~~~~~l~~~~---~~~~~~h~~~V~~l~~spDg 319 (827)
++++|++.++.++..++ +|..+|.++ ++.+-.++... |.+. .......+....||
T Consensus 248 ~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T-G~~~W~~~~~~~d~wd~~--~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 248 MTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT-GKYKWHYQETPGDNWDYT--STQPMILADIKIAG 324 (677)
T ss_dssp EEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT-CCEEEEEESSTTCCSCCC--CCSCCEEEEEEETT
T ss_pred eeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC-CCEEEEEecCCCcccccc--cCCCcEEEecccCC
Confidence 78899999999888775 588899888 66655554311 1111 11223334445588
Q ss_pred ---CEEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 320 ---SAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 320 ---~~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
..++++..+|.+.++|..+|+++.....
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~ 355 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNF 355 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccc
Confidence 6899999999999999999998877653
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.47 E-value=0.0022 Score=67.63 Aligned_cols=177 Identities=7% Similarity=0.048 Sum_probs=96.3
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l 341 (827)
+.+.+++. +.+|+.++.|..||.. ++....... ....+.++...++|.+.+.. +++..++ .++..
T Consensus 142 ~~~~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~~--------~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~ 206 (330)
T 3hxj_A 142 PIVSEDGT-IYVGSNDNYLYAINPD--GTEKWRFKT--------NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTE 206 (330)
T ss_dssp CEECTTSC-EEEECTTSEEEEECTT--SCEEEEEEC--------SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCE
T ss_pred eEEcCCCE-EEEEcCCCEEEEECCC--CCEeEEEec--------CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcE
Confidence 55666776 5567888999998876 344444443 34457778888888866655 8999999 55555
Q ss_pred EEEeccccccceeeeeecCCCCCCccceeec--ceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEE
Q 003356 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQV 419 (827)
Q Consensus 342 ~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg--~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~ 419 (827)
....... ...+.++...+++ ..++.. ..+..++..+..++....... . ..+...+..-.+|.
T Consensus 207 ~~~~~~~-~~~~~~~~~~~~g----~l~v~t~~~gl~~~~~~g~~~~~~~~~~~-~---------~~~~~~~~~g~l~v- 270 (330)
T 3hxj_A 207 KWNFYAG-YWTVTRPAISEDG----TIYVTSLDGHLYAINPDGTEKWRFKTGKR-I---------ESSPVIGNTDTIYF- 270 (330)
T ss_dssp EEEECCS-SCCCSCCEECTTS----CEEEEETTTEEEEECTTSCEEEEEECSSC-C---------CSCCEECTTSCEEE-
T ss_pred EEEEccC-CcceeceEECCCC----eEEEEcCCCeEEEECCCCCEeEEeeCCCC-c---------cccceEcCCCeEEE-
Confidence 5544432 2446677776665 554432 245555654444443322110 0 00001111123332
Q ss_pred EEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEE
Q 003356 420 IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYD 479 (827)
Q Consensus 420 ~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd 479 (827)
...+..++.+.. .....|.. .+ ....+.++..+++|+ |.+|+.+|.+...
T Consensus 271 ~t~~ggl~~~d~--~g~~~~~~-~~------~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 271 GSYDGHLYAINP--DGTEKWNF-ET------GSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp ECTTCEEEEECT--TSCEEEEE-EC------SSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred ecCCCCEEEECC--CCcEEEEE-Ec------CCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 222234555542 12234432 11 123456677888887 5568999998443
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.45 E-value=0.0018 Score=73.10 Aligned_cols=234 Identities=11% Similarity=0.028 Sum_probs=126.0
Q ss_pred EeCCcEEEEeecc-Cccccceeecccee----cCCCCcEE-EEE-c-CCCCEEEEEe------------------cCCeE
Q 003356 227 YSNGQLMSCSVSK-KGLKLAEFIKIDKE----LGSGDAVC-ASI-A-PEQQILAVGT------------------RRGVV 280 (827)
Q Consensus 227 s~dG~~~~~~~~~-~~~~~~~~~~~~~~----~~h~~~v~-va~-s-p~~~lla~g~------------------~dg~v 280 (827)
.+||+.++++..+ ..+...+..+.+.. ........ +++ + |+++++.+++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 3577766665443 23445555443321 11122344 777 5 9999998884 35689
Q ss_pred EEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC-------------------------------
Q 003356 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR------------------------------- 329 (827)
Q Consensus 281 ~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg------------------------------- 329 (827)
.+.|.++ .+...++.. .+.-..++.+|||+++++.+.+.
T Consensus 178 tvID~~t-~~v~~qI~V---------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 178 TAVDADK-WEVAWQVLV---------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEEETTT-TEEEEEEEE---------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEEECCC-CeEEEEEEe---------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 9999887 666665554 12335688999999999988653
Q ss_pred -------cEEEEeccC--Cee-EEEeccccccceeeeeecCCCCCCcccee-ecc---eeEEEccCCce-----------
Q 003356 330 -------GLTVWSVSG--CRL-MSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT---SMMQWDEYGYR----------- 384 (827)
Q Consensus 330 -------~v~vWs~~~--~~l-~~tl~~~~~~~v~s~~~sp~~~~~~~~l~-sg~---~i~~W~~~~~~----------- 384 (827)
+|.|.|..+ +.. ...+... .....+.++||+ +.+. ++. ++.+++..+.+
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDG----k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDK----KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTS----SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCC----CEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 466666665 333 3344321 234567788888 5433 222 56666666432
Q ss_pred -EEEEecCCcceE-EEEec-ceeeeecccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceeeccCCCcE-----E
Q 003356 385 -LYAIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV-----Q 456 (827)
Q Consensus 385 -l~~~~~~~~~~v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~~~~~~~I-----~ 456 (827)
......-..+.. .+|+. +...++.-.|+.+..|++..... .+.|.. .++ +..+...|..|- .
T Consensus 322 ~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~---~~~g~~----~~~---vi~kidV~yqpGh~~~~~ 391 (595)
T 1fwx_A 322 AVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIR---AYAGEK----VDP---IKDKLDVHYQPGHLKTVM 391 (595)
T ss_dssp GEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHH---HHHTCS----CCC---EEEEEECSSCEEEEEETT
T ss_pred ceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhh---hhcccc----cce---eEEEeecccccccceecc
Confidence 222222112222 56666 54444555666676776533100 000000 011 122222232221 1
Q ss_pred EEEEcCCCCEEEEEeC---Cce-----------EEEEcCCCeEE
Q 003356 457 HVAASKDGMFLAVAGL---HGL-----------ILYDIRQKKWR 486 (827)
Q Consensus 457 ~va~SpdG~~lavag~---dg~-----------iiwd~~t~~w~ 486 (827)
..+++|||++|+++++ |.+ .++|+.+++-+
T Consensus 392 g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 392 GETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp TTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred ceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 2356899999999865 444 57777665533
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.42 E-value=0.0041 Score=70.29 Aligned_cols=104 Identities=7% Similarity=-0.015 Sum_probs=64.6
Q ss_pred EEEEeCCcEEEEee-ccCccccceeeccc---------------eecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCC
Q 003356 224 FVLYSNGQLMSCSV-SKKGLKLAEFIKID---------------KELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (827)
Q Consensus 224 ~~~s~dG~~~~~~~-~~~~~~~~~~~~~~---------------~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~ 287 (827)
+.++|||+.++++. .+.++.+++..+.+ ...--..+..++|+|+|....+...|++|.+||++.
T Consensus 282 v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 282 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 77999999777655 35566666665431 011124456699999996666777899999999876
Q ss_pred C------CcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc
Q 003356 288 S------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (827)
Q Consensus 288 ~------~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~ 327 (827)
. .+....+...+..+.++|...-..+..+|||++|.++..
T Consensus 362 a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 362 AIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp HHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred hhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 1 011223333333344444322233467899999998865
No 237
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.42 E-value=0.013 Score=68.72 Aligned_cols=124 Identities=10% Similarity=0.146 Sum_probs=75.5
Q ss_pred cEEEEEcCCC---CEEEEEecCCeEEEEEcCCCCcceEEEEeecCC-------------------------CCCCCCCC-
Q 003356 259 AVCASIAPEQ---QILAVGTRRGVVELYDLAESASLIRTVSLYDWG-------------------------YSMDDTGP- 309 (827)
Q Consensus 259 ~v~va~sp~~---~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~-------------------------~~~~h~~~- 309 (827)
++.+....+| +.+++++.+|.+.++|..+ ++.+......... ..++..|.
T Consensus 315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~ 393 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH 393 (677)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred cEEEecccCCcEeeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence 4445555578 7899999999999999988 7766554421100 00000000
Q ss_pred -eEEEEECCCCCEEEEEEcC-------------------------------------------CcEEEEeccCCeeEEEe
Q 003356 310 -VSCIAWTPDNSAFAVGWKS-------------------------------------------RGLTVWSVSGCRLMSTI 345 (827)
Q Consensus 310 -V~~l~~spDg~~Lasg~~D-------------------------------------------g~v~vWs~~~~~l~~tl 345 (827)
-..++++|++.++.+...+ |.|..||+.+++...+.
T Consensus 394 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~ 473 (677)
T 1kb0_A 394 NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV 473 (677)
T ss_dssp CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE
T ss_pred CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec
Confidence 0257899998888776432 67999999999888776
Q ss_pred ccccccceeeeeecCCCCCCccceeecc---eeEEEccCCceEEEEe
Q 003356 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 389 (827)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~ 389 (827)
... ..+.+..+..++ ..+..+. .+..|+..+++.+...
T Consensus 474 ~~~--~~~~~g~~~~~g----~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 474 EHV--SPWNGGTLTTAG----NVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp EES--SSCCCCEEEETT----TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCC--CCCcCcceEeCC----CEEEEECCCCcEEEEECCCCceeeee
Confidence 543 122233333333 3333332 6778888777665444
No 238
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.42 E-value=0.15 Score=63.23 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=64.5
Q ss_pred ceEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCC------ccEEEEEec-CcEEEEE
Q 003356 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD------TKLIAVVTS-SLYLHIF 94 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPD------g~~lav~t~-dg~l~l~ 94 (827)
..|++.+.++..++.++.+.+.+...+ .+ .+....+ .+-.+++.++++.|. ++++|++.. |++++++
T Consensus 514 ~~I~~As~n~~~vvva~g~~l~~fel~-~~-~L~~~~~----~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~ 587 (1158)
T 3ei3_A 514 KNISVASCNSSQVVVAVGRALYYLQIH-PQ-ELRQISH----TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 587 (1158)
T ss_dssp CCCCEEEECSSEEEEEETTEEEEEEEE-TT-EEEEEEE----EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEE
T ss_pred CEEEEEEeCCCEEEEEECCEEEEEEee-CC-ceeeecc----cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEE
Confidence 455555555555555555666666653 22 2222222 112367889998864 479999996 9999999
Q ss_pred EEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCc
Q 003356 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGE 162 (827)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~ 162 (827)
++.. -... ....+ ... ...+...+..+ ...-++++|..||.+..+.++..
T Consensus 588 sL~~-l~~~------------~~~~L--~~~--~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~ 637 (1158)
T 3ei3_A 588 KLPS-FELL------------HKEML--GGE--IIPRSILMTTF-ESSHYLLCALGDGALFYFGLNIE 637 (1158)
T ss_dssp ETTT-CCEE------------EEEEC--CSS--CCEEEEEEEEE-TTEEEEEEEETTSEEEEEEECTT
T ss_pred ECCC-CCeE------------EEEEC--CCC--CCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCC
Confidence 9852 1111 10000 000 00011111121 12257899999999988888753
No 239
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.39 E-value=0.36 Score=57.50 Aligned_cols=201 Identities=10% Similarity=0.054 Sum_probs=104.4
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 258 ~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
..+. +...+++.+.+ |+.++-+..|+..+ ++ ...+... ......|.++...++|.+.+.. . +++..++.
T Consensus 407 ~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~-~~-~~~~~~~-----~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~ 476 (781)
T 3v9f_A 407 NSVLCSLKDSEGNLWF-GTYLGNISYYNTRL-KK-FQIIELE-----KNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDL 476 (781)
T ss_dssp SBEEEEEECTTSCEEE-EETTEEEEEECSSS-CE-EEECCST-----TTCCCCEEEEEECTTSEEEEEE-T-TEEEEEES
T ss_pred cceEEEEECCCCCEEE-EeccCCEEEEcCCC-Cc-EEEeccC-----CCCCCeEEEEEECCCCCEEEEE-C-CceEEEeC
Confidence 3454 77777777655 67666677877654 32 2222110 0134679999999998866544 4 68999998
Q ss_pred cCCeeEEEeccc----cccceeeeeecCCCCCCccceeec--ceeEEEccCCceEEEEecCC---cceEEEEecceeeee
Q 003356 337 SGCRLMSTIRQI----SLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGS---SERVLIFSFGKCCLN 407 (827)
Q Consensus 337 ~~~~l~~tl~~~----~~~~v~s~~~sp~~~~~~~~l~sg--~~i~~W~~~~~~l~~~~~~~---~~~v~~~~~~~~~~s 407 (827)
.+++........ ....+.++...+++ ..++.. .-+..++..+.+........ ...|.+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~--------- 543 (781)
T 3v9f_A 477 ASKKVIHHYDTSNSQLLENFVRSIAQDSEG----RFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQ--------- 543 (781)
T ss_dssp SSSSCCEEECTTTSSCSCSCEEEEEECTTC----CEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEE---------
T ss_pred CCCeEEecccCcccccccceeEEEEEcCCC----CEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEE---------
Confidence 776543221111 02346666666665 555432 23445565554432221110 111211
Q ss_pred cccCCCeeeeEEEEcCCeE-EEEecCCCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceEEEEcCCCeEE
Q 003356 408 RGVSGMTYARQVIYGEDRL-LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR 486 (827)
Q Consensus 408 ~~~d~~~~~w~~~~~~~~~-~~~~~~d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~iiwd~~t~~w~ 486 (827)
...|..-.+|.... ..+ +.+..... .+........+ .+..|.++..+++|+.. .++.+|+..|+..+++++
T Consensus 544 i~~d~~g~lWi~T~--~Glv~~~d~~~~---~~~~~~~~~gl--~~~~i~~i~~d~~g~lW-~~t~~Gl~~~~~~~~~~~ 615 (781)
T 3v9f_A 544 IYRSSKGQMWLATG--EGLVCFPSARNF---DYQVFQRKEGL--PNTHIRAISEDKNGNIW-ASTNTGISCYITSKKCFY 615 (781)
T ss_dssp EEECTTSCEEEEET--TEEEEESCTTTC---CCEEECGGGTC--SCCCCCEEEECSSSCEE-EECSSCEEEEETTTTEEE
T ss_pred EEECCCCCEEEEEC--CCceEEECCCCC---cEEEccccCCC--CCceEEEEEECCCCCEE-EEcCCceEEEECCCCceE
Confidence 11222223343211 333 33322111 11111111111 12347889999999754 566889779999998887
Q ss_pred eeC
Q 003356 487 VFG 489 (827)
Q Consensus 487 ~f~ 489 (827)
.|.
T Consensus 616 ~~~ 618 (781)
T 3v9f_A 616 TYD 618 (781)
T ss_dssp EEC
T ss_pred Eec
Confidence 774
No 240
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.33 E-value=0.023 Score=66.52 Aligned_cols=112 Identities=18% Similarity=0.068 Sum_probs=67.3
Q ss_pred ceEEEEEe-CCcEEEEeeccC-----------ccccceeeccce-----e-cCCCCcE-EEEEcCCCCEEEEEec-CCeE
Q 003356 221 RLLFVLYS-NGQLMSCSVSKK-----------GLKLAEFIKIDK-----E-LGSGDAV-CASIAPEQQILAVGTR-RGVV 280 (827)
Q Consensus 221 ~~~~~~s~-dG~~~~~~~~~~-----------~~~~~~~~~~~~-----~-~~h~~~v-~va~sp~~~lla~g~~-dg~v 280 (827)
...+++.+ +|++++.+..+. .+..||..+.+- . ..+.... .+++.++++++++|+. ++.+
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence 34566666 999999886432 233455433211 0 1122212 2677789999999985 4589
Q ss_pred EEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE-cC-----CcEEEEeccCCe
Q 003356 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KS-----RGLTVWSVSGCR 340 (827)
Q Consensus 281 ~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~-~D-----g~v~vWs~~~~~ 340 (827)
.+||..+ ..... +. ..+ ....-.+++..+||+.++.|+ .+ ..+.+||..+++
T Consensus 268 ~~yd~~t-~~W~~-~~--~~~----~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 268 SLYDSSS-DSWIP-GP--DMQ----VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEEGGG-TEEEE-CC--CCS----SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EEecCcC-CceeE-CC--CCC----ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 9999876 33221 11 110 111113556678999999998 44 468999998775
No 241
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.31 E-value=0.00023 Score=77.26 Aligned_cols=62 Identities=11% Similarity=-0.067 Sum_probs=35.4
Q ss_pred cceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 30 NNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 30 dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
++.+++...++.|..||.. .+..+-.+. . +.+.+..+.+|++.+++++.||.|..||..+++
T Consensus 9 ~~~v~~gs~dg~v~a~d~~-tG~~~W~~~-~-------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKR-TGSIKWTLK-E-------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp TTEEEEEETTSEEEEEETT-TCCEEEEEE-C-------CCSCCCC-----CCEEECTTTCCEEEC-----C
T ss_pred CCEEEEEcCCCEEEEEECC-CCCEEEEec-C-------CCceecceEcCCCEEEEeCCCCEEEEEECCCCc
Confidence 4555555567899999984 665543332 1 344555567888888888999999999987554
No 242
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.15 E-value=0.033 Score=65.49 Aligned_cols=61 Identities=7% Similarity=-0.021 Sum_probs=45.9
Q ss_pred CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 277 dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
+|+|+.||+.+ ++.+-.... + .++..-.++..|.++++|+.||.++.||..+|+++.+++.
T Consensus 454 ~g~l~A~D~~t-G~~~W~~~~--------~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 454 SGKLIAWDPVK-QQAAWEVPY--------V-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEEEETTT-TEEEEEEEE--------S-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceeEEEEECCC-CCeEeEccC--------C-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 37899999988 666555544 2 2233345667888999999999999999999998877764
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.13 E-value=0.28 Score=49.63 Aligned_cols=93 Identities=10% Similarity=0.068 Sum_probs=56.6
Q ss_pred cEEEEEcCCCCEEE-EEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 259 AVCASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 259 ~v~va~sp~~~lla-~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
+..++++|+++.|. +-...+.|.+++.+. ......+.. ...-..++.. ++.+.++.+..+.|.+++..
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~---------~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG---------LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEEC---------CCSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecC---------CCCceEEEEe-CCEEEEEECCCCeEEEEeCC
Confidence 44489999876554 445568999999864 322222221 1122455543 44455555566899999999
Q ss_pred CCeeEEEeccccccceeeeeecCCC
Q 003356 338 GCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+++...++.-........+++.|++
T Consensus 238 ~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 238 ISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp TTEEEEEECCSSCCCCCCEEEECSC
T ss_pred CCCceEEEccccccccceeeecCcc
Confidence 8888887754322234556666665
No 244
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.97 E-value=0.32 Score=51.22 Aligned_cols=119 Identities=8% Similarity=0.130 Sum_probs=69.3
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 258 ~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
..+. +++.|++++++++...+..+-+|- .+.....+.. .....+..++++|+|+.++++ .+|.+++++.
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~~-------~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~ 232 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHNR-------TTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDP 232 (327)
T ss_dssp CCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEEC-------CSSSCEEEEEECTTSCEEEEE-TTTEEEEEET
T ss_pred cceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECCC-------CCCCccceeEECCCCCEEEEe-CCceEEEecC
Confidence 3455 899999999887765443333331 1233333322 145678999999999877555 5577777654
Q ss_pred cCCeeEEEeccc---cccceeeeeecCCCCCCccceeecc-eeEEEccCCceEEEEec
Q 003356 337 SGCRLMSTIRQI---SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE 390 (827)
Q Consensus 337 ~~~~l~~tl~~~---~~~~v~s~~~sp~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~ 390 (827)
.+++....+... ....+.++++.+++ ..++.+. ..+.+..++++.|....
T Consensus 233 D~G~tW~~~~~~~~~~~~~~~~v~~~~~~----~~~~~g~~g~i~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 233 DNSENWGELLSPLRRNSVGFLDLAYRTPN----EVWLAGGAGALLCSQDGGQTWQQDV 286 (327)
T ss_dssp TEEEEECCCBCTTSSCCSCEEEEEESSSS----CEEEEESTTCEEEESSTTSSCEECG
T ss_pred CCCCeeEeccCCcccCCcceEEEEecCCC----EEEEEeCCCeEEEeCCCCcccEEcC
Confidence 445444333211 11246777777665 5666544 33456666666666544
No 245
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.96 E-value=0.045 Score=65.12 Aligned_cols=108 Identities=9% Similarity=0.006 Sum_probs=65.7
Q ss_pred EEEE-eCCcEEEEeecc-C----ccccceeecc-ceecCCCC-cE-EEEEcCCCCEEEEEecC-----CeEEEEEcCCCC
Q 003356 224 FVLY-SNGQLMSCSVSK-K----GLKLAEFIKI-DKELGSGD-AV-CASIAPEQQILAVGTRR-----GVVELYDLAESA 289 (827)
Q Consensus 224 ~~~s-~dG~~~~~~~~~-~----~~~~~~~~~~-~~~~~h~~-~v-~va~sp~~~lla~g~~d-----g~v~vw~~~~~~ 289 (827)
..++ |||+.++.+.+. + ++.+++..++ +.+...-. .. .++|+|||+.|+....| ..|.++++.+ +
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt-~ 257 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK-L 257 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS-C
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC-C
Confidence 4577 888877665542 2 2555665554 32221111 12 27899999988888776 3677788766 3
Q ss_pred cc--eEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcC---CcEEEEeccCC
Q 003356 290 SL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGC 339 (827)
Q Consensus 290 ~~--~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~D---g~v~vWs~~~~ 339 (827)
.. ...+... .......+.|||||++|+....+ ..|.++++.++
T Consensus 258 ~~~~~lv~~~~-------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 258 QSEDVCLYEEH-------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp GGGCEEEEECC-------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred chhcEEEEecC-------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 22 2222221 23346788999999988876532 35777888764
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.96 E-value=0.033 Score=56.75 Aligned_cols=114 Identities=10% Similarity=0.022 Sum_probs=71.5
Q ss_pred EE-EEEcCCCCEEEEEec--CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 260 VC-ASIAPEQQILAVGTR--RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 260 v~-va~sp~~~lla~g~~--dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
.. ++|++++.+.++.+. +++|++.|..+ ++.++.+.... +.. ...+++. +++..++.+.++.+.++|.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l~~------~~f-geGi~~~-g~~lyv~t~~~~~v~viD~ 93 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQT-GKVENIHKMDD------SYF-GEGLTLL-NEKLYQVVWLKNIGFIYDR 93 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTT-CCEEEEEECCT------TCC-EEEEEEE-TTEEEEEETTCSEEEEEET
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCC-CCEEEEEecCC------Ccc-eEEEEEe-CCEEEEEEecCCEEEEEEC
Confidence 45 899998766665543 57999999998 77777765411 111 1234444 2355566778899999999
Q ss_pred cCCeeEEEeccc-cccceeeeeecCCCCCCccceeec-c-eeEEEccCCceEEEEe
Q 003356 337 SGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSG-T-SMMQWDEYGYRLYAIE 389 (827)
Q Consensus 337 ~~~~l~~tl~~~-~~~~v~s~~~sp~~~~~~~~l~sg-~-~i~~W~~~~~~l~~~~ 389 (827)
.+.+.+.++.-. +. ...+++++. ..+++. + .+.+.|+.+.+.....
T Consensus 94 ~t~~v~~~i~~g~~~----g~glt~Dg~---~l~vs~gs~~l~viD~~t~~v~~~I 142 (266)
T 2iwa_A 94 RTLSNIKNFTHQMKD----GWGLATDGK---ILYGSDGTSILYEIDPHTFKLIKKH 142 (266)
T ss_dssp TTTEEEEEEECCSSS----CCEEEECSS---SEEEECSSSEEEEECTTTCCEEEEE
T ss_pred CCCcEEEEEECCCCC----eEEEEECCC---EEEEECCCCeEEEEECCCCcEEEEE
Confidence 999988887532 11 123445551 222222 2 6667777776665544
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.94 E-value=0.053 Score=54.74 Aligned_cols=182 Identities=14% Similarity=0.090 Sum_probs=104.7
Q ss_pred EEEcCCCCEEEEEecCC--eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCC-CEEEEEEcCCcEEEEeccC
Q 003356 262 ASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 262 va~sp~~~lla~g~~dg--~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg-~~Lasg~~Dg~v~vWs~~~ 338 (827)
+.|+ ++.+..+.+.+| .|+++|+.+ ++.++.+.. . .........++| +..++.+.++.+.++|..+
T Consensus 48 L~~~-~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l--------~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 48 FFYR-NGYFYESTGLNGRSSIRKVDIES-GKTLQQIEL--------G-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp EEEE-TTEEEEEEEETTEEEEEEECTTT-CCEEEEEEC--------C-TTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred EEEE-CCEEEEECCCCCCceEEEEECCC-CcEEEEEec--------C-CccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence 8888 778888888876 999999998 787777765 1 222232233334 4555667789999999999
Q ss_pred CeeEEEeccccccceeeeeecCCCCCCccceeec-c-eeEEEccCCceEEEEecCCc--ce---EEEEecceeeeecccC
Q 003356 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-SMMQWDEYGYRLYAIEEGSS--ER---VLIFSFGKCCLNRGVS 411 (827)
Q Consensus 339 ~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg-~-~i~~W~~~~~~l~~~~~~~~--~~---v~~~~~~~~~~s~~~d 411 (827)
.+++.++.-.+. ...+.+++ ...+++. + .+.++|+.+.+......-.. .. +..+.+ .+
T Consensus 117 ~~~~~ti~~~~e----G~glt~dg---~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~--------~~ 181 (262)
T 3nol_A 117 LRQVRSFNYDGE----GWGLTHND---QYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW--------VD 181 (262)
T ss_dssp CCEEEEEECSSC----CCCEEECS---SCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE--------ET
T ss_pred CcEEEEEECCCC----ceEEecCC---CEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE--------EC
Confidence 999888864321 12233444 1333332 2 67778888887766543211 11 111222 02
Q ss_pred CCeeeeEEEEcCCeEEEEecCCCCcceEEEeeeceee------ccCCCcEEEEEEcCCCCEEEEEeCC
Q 003356 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY------ISQNWPVQHVAASKDGMFLAVAGLH 473 (827)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~~p~~~------~~~~~~I~~va~SpdG~~lavag~d 473 (827)
+ ++|.-....+.+.+..........| +.++.-+ .....-...+|++|+++.+.++|+.
T Consensus 182 G--~lyan~w~~~~I~vIDp~tG~V~~~--Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 182 G--EIFANVWQTNKIVRIDPETGKVTGI--IDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp T--EEEEEETTSSEEEEECTTTCBEEEE--EECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred C--EEEEEEccCCeEEEEECCCCcEEEE--EECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 2 2343333455555555433332222 2211100 0112235789999999999999964
No 248
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.89 E-value=0.26 Score=52.48 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=43.3
Q ss_pred EEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCC---ccEEEEEecC------cEEEEEE
Q 003356 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD---TKLIAVVTSS------LYLHIFK 95 (827)
Q Consensus 25 v~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPD---g~~lav~t~d------g~l~l~~ 95 (827)
++|.|||+++++-..++|.+++. .....+.... ......+....++|+|| +..|+++... +.|..|+
T Consensus 36 ia~~pdG~l~V~e~~g~I~~i~~-g~~~~~~~~~---v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~ 111 (352)
T 2ism_A 36 LAFLPDGGMLIAERPGRIRLFRE-GRLSTYAELS---VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLR 111 (352)
T ss_dssp EEECTTSCEEEEETTTEEEEEET-TEEEEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEcCCCeEEEEeCCCeEEEEEC-CCccEeecce---EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEE
Confidence 78999999888777788988883 2222222221 11112345578999999 6667666542 5566666
Q ss_pred EE
Q 003356 96 VQ 97 (827)
Q Consensus 96 v~ 97 (827)
..
T Consensus 112 ~~ 113 (352)
T 2ism_A 112 HL 113 (352)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 249
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.87 E-value=0.01 Score=62.39 Aligned_cols=96 Identities=9% Similarity=0.004 Sum_probs=59.5
Q ss_pred CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 268 ~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
+..|.+|+.++.+..+|.. ++....... +...+.++...++|. |..|..++++..++.. ++.......
T Consensus 107 ~~~l~v~t~~~~l~~~d~~--g~~~~~~~~--------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~ 174 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD--GTEKWRFKT--------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT 174 (330)
T ss_dssp TTEEEEECTTSEEEEECTT--SCEEEEEEC--------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred CCEEEEEecCCEEEEEcCC--CCEEEEEcC--------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec
Confidence 4567778889999998876 333333333 344566777788887 4456677999999998 655555443
Q ss_pred ccccceeeeeecCCCCCCccceeecceeEEEcc
Q 003356 348 ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380 (827)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~ 380 (827)
. ...+.++...+++ ..++....+..++.
T Consensus 175 ~-~~~~~~~~~d~~g----~l~v~t~~l~~~d~ 202 (330)
T 3hxj_A 175 N-DAITSAASIGKDG----TIYFGSDKVYAINP 202 (330)
T ss_dssp S-SCCCSCCEECTTC----CEEEESSSEEEECT
T ss_pred C-CCceeeeEEcCCC----EEEEEeCEEEEECC
Confidence 2 2345555555555 44443344555563
No 250
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.83 E-value=0.064 Score=56.32 Aligned_cols=75 Identities=11% Similarity=0.075 Sum_probs=49.1
Q ss_pred EEEEcCCCCEEEEE-ecCCeEEEEEcCCCC-cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc----------C
Q 003356 261 CASIAPEQQILAVG-TRRGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK----------S 328 (827)
Q Consensus 261 ~va~sp~~~lla~g-~~dg~v~vw~~~~~~-~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~----------D 328 (827)
-++++|+++.|.++ +.++.|.+|+++... .....+.. ..+ ...+++.++|++.++... .
T Consensus 189 gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~ 259 (322)
T 2fp8_A 189 GAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVD 259 (322)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEE
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--------CCC-CCCeEECCCCCEEEEecCcccccccCCCc
Confidence 38999999866555 556899999987511 11222221 123 678999999997777655 4
Q ss_pred CcEEEEeccCCeeEEEe
Q 003356 329 RGLTVWSVSGCRLMSTI 345 (827)
Q Consensus 329 g~v~vWs~~~~~l~~tl 345 (827)
+.|..++..+ +.+..+
T Consensus 260 ~~v~~~d~~G-~~~~~~ 275 (322)
T 2fp8_A 260 PKGIKFDEFG-NILEVI 275 (322)
T ss_dssp EEEEEECTTS-CEEEEE
T ss_pred cEEEEECCCC-CEEEEE
Confidence 6688888764 444444
No 251
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.81 E-value=1.4 Score=52.46 Aligned_cols=76 Identities=9% Similarity=0.102 Sum_probs=46.9
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 258 ~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
..+. +...++|.+- +|+.++-+..|+..+ ... ..+... .......|.++...++|.+.+ |..++++..++.
T Consensus 363 ~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~-~~~-~~~~~~----~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~ 434 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLW-IGTDGGGINVFENGK-RVA-IYNKEN----RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNT 434 (781)
T ss_dssp SCEEEEEECTTSCEE-EEEBSSCEEEEETTE-EEE-ECC---------CCCSBEEEEEECTTSCEEE-EETTEEEEEECS
T ss_pred cceEEEEEcCCCCEE-EEeCCCcEEEEECCC-CeE-EEccCC----CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcC
Confidence 3454 7777777654 566666677887654 221 111100 011356799999998988666 556678999998
Q ss_pred cCCee
Q 003356 337 SGCRL 341 (827)
Q Consensus 337 ~~~~l 341 (827)
.+++.
T Consensus 435 ~~~~~ 439 (781)
T 3v9f_A 435 RLKKF 439 (781)
T ss_dssp SSCEE
T ss_pred CCCcE
Confidence 77653
No 252
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.81 E-value=0.71 Score=49.14 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=37.2
Q ss_pred EEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCC---ccEEEEEec
Q 003356 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD---TKLIAVVTS 87 (827)
Q Consensus 25 v~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPD---g~~lav~t~ 87 (827)
++|.|||+++++-..++|.+++.+ ....+.... . .....+....++|+|| +..|+++..
T Consensus 34 ia~~pdG~l~V~e~~g~I~~~d~~-G~~~~~~~~-v--~~~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 34 IAPLGGGRYLVTERPGRLVLISPS-GKKLVASFD-V--ANVGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp EEEEETTEEEEEETTTEEEEECSS-CEEEEEECC-C--CCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred EEEcCCCeEEEEeCCCEEEEEeCC-CceEeeccc-e--eecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 789999998888777888888643 222222211 0 0112345678999998 666666554
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.69 E-value=0.25 Score=57.73 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=57.7
Q ss_pred EEEcCCCCEEEEEecCCe-------------------EEEEEcCCCCcceEEEEeec---CCCCCCCCCCeEEEEECCCC
Q 003356 262 ASIAPEQQILAVGTRRGV-------------------VELYDLAESASLIRTVSLYD---WGYSMDDTGPVSCIAWTPDN 319 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~-------------------v~vw~~~~~~~~~~~l~~~~---~~~~~~h~~~V~~l~~spDg 319 (827)
++++|+..++.+++.++. |..+|.++ ++.+-..+... |.+. -..+........||
T Consensus 235 ~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t-G~~~W~~~~~~~~~wd~~--~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 235 MAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT-GKLAWHYQVTPGDSWDFT--ATQQITLAELNIDG 311 (668)
T ss_dssp EEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT-CCEEEEEESSTTCCSCCC--CCSCEEEEEEEETT
T ss_pred eEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC-CceeeEeecCCCcccccc--CCCCcEEEEeccCC
Confidence 789999899999988764 88889888 66555554311 1111 12333333444578
Q ss_pred C---EEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 320 S---AFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 320 ~---~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
+ .++++..+|.+.++|..+|+++...+.
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 342 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKF 342 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEeccccc
Confidence 6 789999999999999999988866543
No 254
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.63 E-value=0.06 Score=64.03 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=57.9
Q ss_pred cEE-EEEc-CCCCEEEEEecC-C----eEEEEEcCCCC-cceE-EEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCC
Q 003356 259 AVC-ASIA-PEQQILAVGTRR-G----VVELYDLAESA-SLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (827)
Q Consensus 259 ~v~-va~s-p~~~lla~g~~d-g----~v~vw~~~~~~-~~~~-~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg 329 (827)
.+. .+|| |||++||.+... | +|+++|+.+ + +.+. .+.. ....++|+|||+.|+....|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~-g~~~l~~~~~~-----------~~~~~~WspDg~~l~y~~~d~ 242 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD-PSQTIADKVSG-----------TNGEIVWGPDHTSLFYVTKDE 242 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC-TTCCCCCCEEE-----------ECSCCEECSSTTEEEEEEECT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC-CCEeCCccccC-----------ceeeEEEecCCCEEEEEEECC
Confidence 344 8999 999999976542 2 599999987 4 3221 1211 134688999999888777652
Q ss_pred -----cEEEEeccCCee--EEEeccccccceeeeeecCCC
Q 003356 330 -----GLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 330 -----~v~vWs~~~~~l--~~tl~~~~~~~v~s~~~sp~~ 362 (827)
.|.++++.++.. ...+.+.......++.++||+
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg 282 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT 282 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC
Confidence 577778766531 112222112234567888887
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.40 E-value=0.29 Score=51.19 Aligned_cols=98 Identities=11% Similarity=0.090 Sum_probs=57.2
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCC-----CC--------CCCCeEEEEECC-CCCEEEEE
Q 003356 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS-----MD--------DTGPVSCIAWTP-DNSAFAVG 325 (827)
Q Consensus 260 v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~-----~~--------h~~~V~~l~~sp-Dg~~Lasg 325 (827)
-.++++++++++.++..++.|..|+... .. ...+.... .+. .+ ..+....+++.+ +|++++ +
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~-~~-~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-~ 97 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPN-SG-FVDFAYAS-PYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-V 97 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTT-TC-EEEEEESC-TTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-E
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCC-Cc-eEEEeccc-ccccccccccccchhccccCCCCceEEEcCCCCcEEE-E
Confidence 3478899999788888899999988754 32 33332200 000 00 113578899998 665444 4
Q ss_pred EcCCcEEEEeccCCeeEEEecc----ccccceeeeeecC-CC
Q 003356 326 WKSRGLTVWSVSGCRLMSTIRQ----ISLSSISSPIVKP-NQ 362 (827)
Q Consensus 326 ~~Dg~v~vWs~~~~~l~~tl~~----~~~~~v~s~~~sp-~~ 362 (827)
...+.+..++..++.. ..+.. ........+++.+ ++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G 138 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG 138 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC
Confidence 4446688888876542 22211 1112355677777 66
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.26 E-value=0.22 Score=50.31 Aligned_cols=183 Identities=10% Similarity=0.058 Sum_probs=103.7
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCC-eEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP-VSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~-V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~ 340 (827)
+.|+ ++.+..+.+.+|.|+++|+.+ ++.++.+ . .... --.++... ++..++.+.++.+.++|..+.+
T Consensus 60 L~~~-~~~Ly~stG~~g~v~~iD~~T-gkv~~~~-l--------~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 60 LVFH-QGHFFESTGHQGTLRQLSLES-AQPVWME-R--------LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp EEEE-TTEEEEEETTTTEEEECCSSC-SSCSEEE-E--------CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTE
T ss_pred EEEE-CCEEEEEcCCCCEEEEEECCC-CcEEeEE-C--------CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCc
Confidence 7776 467888888899999999998 7777776 4 1111 12344443 3555667888999999999999
Q ss_pred eEEEeccccccceeeeeecCCCCCCccceeec-c-eeEEEccCCceEEEEecCCc--ce---EEEEecceeeeecccCCC
Q 003356 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-SMMQWDEYGYRLYAIEEGSS--ER---VLIFSFGKCCLNRGVSGM 413 (827)
Q Consensus 341 l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg-~-~i~~W~~~~~~l~~~~~~~~--~~---v~~~~~~~~~~s~~~d~~ 413 (827)
++.++.-.+.. ..+.+++ ...+++. + .+.++|+.+.+....+.-.. .. +..+.+ .++
T Consensus 128 ~~~ti~~~~eG----wGLt~Dg---~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~--------~dG- 191 (268)
T 3nok_A 128 RERTTRYSGEG----WGLCYWN---GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC--------ANG- 191 (268)
T ss_dssp EEEEEECSSCC----CCEEEET---TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE--------ETT-
T ss_pred EEEEEeCCCce----eEEecCC---CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE--------eCC-
Confidence 99888643211 1222333 1233332 2 67777888877766543211 11 111222 022
Q ss_pred eeeeEEEEcCCeEEEEecCCCCcceEEEee-e-cee---eccCCCcEEEEEEcCCCCEEEEEeCC
Q 003356 414 TYARQVIYGEDRLLVVQSEDTDELKILHLN-L-PVS---YISQNWPVQHVAASKDGMFLAVAGLH 473 (827)
Q Consensus 414 ~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~-~-p~~---~~~~~~~I~~va~SpdG~~lavag~d 473 (827)
++|.-....+.+.+..........|-... + |.. ......-...+|++|+++.|.+.|+.
T Consensus 192 -~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 192 -VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp -EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred -EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 23433334555555554433333331111 1 100 11122346789999999999988863
No 257
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.21 E-value=0.28 Score=48.91 Aligned_cols=187 Identities=13% Similarity=0.106 Sum_probs=102.4
Q ss_pred cEE-EEEcCCCCEEEEEecCC--eEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC-CCEEEEEEcCCcEEEE
Q 003356 259 AVC-ASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVW 334 (827)
Q Consensus 259 ~v~-va~sp~~~lla~g~~dg--~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD-g~~Lasg~~Dg~v~vW 334 (827)
.+- +.|++ +.+..+.+.+| .|+.+|+.+ ++.++.+... .........++ ++.....+.++.+.++
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t-gkv~~~~~l~---------~~~fgeGi~~~~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLET-GRILQRAEVP---------PPYFGAGIVAWRDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTT-CCEEEEEECC---------TTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCC-CCEEEEEeCC---------CCcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 344 88876 66777777654 999999998 7877777651 12222222233 4555667888999999
Q ss_pred eccCCeeEEEeccccccceeeeeecCCCCCCccceeec-c-eeEEEccCCceEEEEecCCc-----ceEEEEecceeeee
Q 003356 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-SMMQWDEYGYRLYAIEEGSS-----ERVLIFSFGKCCLN 407 (827)
Q Consensus 335 s~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg-~-~i~~W~~~~~~l~~~~~~~~-----~~v~~~~~~~~~~s 407 (827)
|..+.+++.++.-.+.. ..+.+++ ...+++- + .+.++|+.+.+......-.. ..+..+.+
T Consensus 91 D~~tl~~~~ti~~~~~G----wglt~dg---~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~------ 157 (243)
T 3mbr_X 91 DLATLTPRARFRYPGEG----WALTSDD---SHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW------ 157 (243)
T ss_dssp ETTTTEEEEEEECSSCC----CEEEECS---SCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE------
T ss_pred ECCcCcEEEEEeCCCCc----eEEeeCC---CEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE------
Confidence 99999999888753221 2222343 1333332 2 67778888877765543211 11122222
Q ss_pred cccCCCeeeeEEEEcCCeEEEEecCCCCcceEEEee-e-ceee---ccCCCcEEEEEEcCCCCEEEEEeCC
Q 003356 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN-L-PVSY---ISQNWPVQHVAASKDGMFLAVAGLH 473 (827)
Q Consensus 408 ~~~d~~~~~w~~~~~~~~~~~~~~~d~~~~~w~~~~-~-p~~~---~~~~~~I~~va~SpdG~~lavag~d 473 (827)
.++ ++|.-....+.+.+..........|-... + |..- .....-...+|++|+++.|.+.|+.
T Consensus 158 --~~G--~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 158 --VNG--ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp --ETT--EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred --eCC--EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 011 12322223444544444333322221110 1 1000 0112246789999999999999864
No 258
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.20 E-value=0.24 Score=50.32 Aligned_cols=111 Identities=12% Similarity=0.025 Sum_probs=71.0
Q ss_pred EEEEeCCcEEEEeec--cCccccceeecccee-----cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEE
Q 003356 224 FVLYSNGQLMSCSVS--KKGLKLAEFIKIDKE-----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~--~~~~~~~~~~~~~~~-----~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~ 296 (827)
+.+++||++++++.. +..+...|..+++.. ..+....-+++. .+++.++...++.+.++|..+ .+.+.++.
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t-~~v~~~i~ 103 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRT-LSNIKNFT 103 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTT-TEEEEEEE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCC-CcEEEEEE
Confidence 346677877776543 456666666655432 112222224444 235555666789999999987 77777765
Q ss_pred eecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
.. . .. ....++||+.|.++..++.|.+.|..+.+...++.
T Consensus 104 ~g----~---~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~ 143 (266)
T 2iwa_A 104 HQ----M---KD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN 143 (266)
T ss_dssp CC----S---SS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred CC----C---CC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 41 0 11 13356788888777778999999999988777765
No 259
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.19 E-value=0.41 Score=48.41 Aligned_cols=95 Identities=7% Similarity=-0.062 Sum_probs=54.2
Q ss_pred CcEEEEEcCCCCE-EEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc---CCcEEE
Q 003356 258 DAVCASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLTV 333 (827)
Q Consensus 258 ~~v~va~sp~~~l-la~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~---Dg~v~v 333 (827)
.+..++++|++.. .++-..++.|.+++.+. . ....+... .......++++|++..|..+.. .+.|..
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g-~-~~~~~~~~-------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~ 150 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDG-T-QRRVLFDT-------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIET 150 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS-C-SCEEEECS-------SCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCC-C-CEEEEEEC-------CCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence 4445999997554 44445578999998864 2 22222210 1234688999997665544443 367888
Q ss_pred EeccCCeeEEEeccccccceeeeeecCCC
Q 003356 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 334 Ws~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
++..+... ..+..........++++|++
T Consensus 151 ~~~dg~~~-~~~~~~~~~~P~gia~d~~~ 178 (267)
T 1npe_A 151 SHMDGTNR-RILAQDNLGLPNGLTFDAFS 178 (267)
T ss_dssp EETTSCCC-EEEECTTCSCEEEEEEETTT
T ss_pred EecCCCCc-EEEEECCCCCCcEEEEcCCC
Confidence 88765432 22221112334566676654
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.02 E-value=0.14 Score=51.23 Aligned_cols=145 Identities=12% Similarity=0.202 Sum_probs=83.4
Q ss_pred CCcEEEEeeccCccccceeecccee-----cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCC
Q 003356 229 NGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (827)
Q Consensus 229 dG~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~ 303 (827)
+++++...-.++.+.++|..+.+.. .+.. ..+.++++.|.+...+++|.++|..+ .+.++++....-+.
T Consensus 74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G----wglt~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~- 147 (243)
T 3mbr_X 74 RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG----WALTSDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGR- 147 (243)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC----CEEEECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTE-
T ss_pred CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc----eEEeeCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCc-
Confidence 3455555444555556665544332 1211 12234666566556688999999887 67777666532110
Q ss_pred CCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCc
Q 003356 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGY 383 (827)
Q Consensus 304 ~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~ 383 (827)
.-..++.+.|. +|+..|..+.+..|.+-|..+++.+..+.-.+.. |........-.....-+.|++++.
T Consensus 148 --~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~--------~~~~~~~~~~~~vlNGIA~d~~~~ 216 (243)
T 3mbr_X 148 --PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALV--------PDADALTDSTNDVLNGIAFDAEHD 216 (243)
T ss_dssp --ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGS--------TTTTSCCCTTSSCEEEEEEETTTT
T ss_pred --ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCc--------cccccccCCcCCceEEEEEcCCCC
Confidence 11345667776 8888888888899999999999988877532110 000000000001125577888777
Q ss_pred eEEEEec
Q 003356 384 RLYAIEE 390 (827)
Q Consensus 384 ~l~~~~~ 390 (827)
+++.+-+
T Consensus 217 ~lfVTGK 223 (243)
T 3mbr_X 217 RLFVTGK 223 (243)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 7777643
No 261
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.99 E-value=0.097 Score=61.17 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=49.9
Q ss_pred EEEEcC-CCCEEEEEecCC-----------eEEEEEcCCCCcce--EEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 003356 261 CASIAP-EQQILAVGTRRG-----------VVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (827)
Q Consensus 261 ~va~sp-~~~lla~g~~dg-----------~v~vw~~~~~~~~~--~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~ 326 (827)
.+++.+ ++++++.|+.+. .+.+||..+ .+.. ..+.. .+.....++++.+||++++.|+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t-~~w~~~~~~~~-------~~~~~~~~~~~~~~g~lyv~GG 261 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST-GIVSDRTVTVT-------KHDMFCPGISMDGNGQIVVTGG 261 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT-CCBCCCEEEEC-------SCCCSSCEEEECTTSCEEEECS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC-CcEEeCcccCC-------CCCCccccccCCCCCCEEEeCC
Confidence 456667 899999988653 688899876 4322 22211 1333345678899999999998
Q ss_pred c-CCcEEEEeccCCe
Q 003356 327 K-SRGLTVWSVSGCR 340 (827)
Q Consensus 327 ~-Dg~v~vWs~~~~~ 340 (827)
. ++.+.+||..+++
T Consensus 262 ~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 262 NDAKKTSLYDSSSDS 276 (656)
T ss_dssp SSTTCEEEEEGGGTE
T ss_pred CCCCceEEecCcCCc
Confidence 4 4589999998775
No 262
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=95.86 E-value=0.095 Score=52.87 Aligned_cols=109 Identities=14% Similarity=0.228 Sum_probs=68.3
Q ss_pred CcEEEEeeccCccccceeecccee-----cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCC
Q 003356 230 GQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (827)
Q Consensus 230 G~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~ 304 (827)
++++++.-.++.+.++|..+.+.. .+.. ..+++|++.|.....+++|.++|..+ .+.+.++....-+.
T Consensus 97 ~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG----~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~-- 169 (262)
T 3nol_A 97 DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG----WGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGE-- 169 (262)
T ss_dssp TEEEEEESSSSEEEEEETTTCCEEEEEECSSCC----CCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTE--
T ss_pred CEEEEEEeeCCEEEEEECccCcEEEEEECCCCc----eEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCc--
Confidence 345554444555555665544332 1211 22335666666655578899999887 66666665421000
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 305 ~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
.-..++.+.|. ||+..|..+.++.|.+-|..+++...++..
T Consensus 170 -~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 170 -ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp -ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred -cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 11334567886 899888888899999999999998887754
No 263
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.73 E-value=2.5 Score=49.19 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=44.4
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCC-CCeEEEEECCCCCEEEEEEc------CCcEEEEeccCC
Q 003356 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGC 339 (827)
Q Consensus 267 ~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~-~~V~~l~~spDg~~Lasg~~------Dg~v~vWs~~~~ 339 (827)
.+..+.+++.|+.|..+|..+ ++.+-.............. .++. .+|.. +++.. +|.|..+|..+|
T Consensus 116 ~~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P~v-----~~~~v-~vg~~~~~~~~~g~v~a~D~~tG 188 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKT-GKAIWSQQTTDPAKPYSITGAPRV-----VKGKV-IIGNGGAEYGVRGFVSAYDADTG 188 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTT-CCEEEEEECSCTTSSCBCCSCCEE-----ETTEE-EECCBCTTTCCBCEEEEEETTTC
T ss_pred ECCEEEEEcCCCEEEEEECCC-CCEeeeeccCCCCCcceecCCCEE-----ECCEE-EEeCCCCCcCCCCEEEEEECCCC
Confidence 356788889999999999988 6665544432110000011 1111 14544 44432 588999999999
Q ss_pred eeEEEec
Q 003356 340 RLMSTIR 346 (827)
Q Consensus 340 ~l~~tl~ 346 (827)
+++.+..
T Consensus 189 ~~~W~~~ 195 (668)
T 1kv9_A 189 KLAWRFY 195 (668)
T ss_dssp CEEEEEE
T ss_pred cEEEEec
Confidence 8877664
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.46 E-value=0.11 Score=52.55 Aligned_cols=110 Identities=12% Similarity=0.067 Sum_probs=72.6
Q ss_pred CCcEEEEeeccCccccceeecccee-----cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCC
Q 003356 229 NGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (827)
Q Consensus 229 dG~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~ 303 (827)
++++++..-.++.+.++|..+.+.. .+..-. ++ +|++.|.....+++|.++|..+ .+.++++....-+.
T Consensus 105 g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwG--Lt--~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~- 178 (268)
T 3nok_A 105 GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWG--LC--YWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQ- 178 (268)
T ss_dssp SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCC--EE--EETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTE-
T ss_pred CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeE--Ee--cCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCc-
Confidence 3456665555666667776555433 122112 22 4677777666788999999887 67777666522100
Q ss_pred CCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 304 ~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
.-..++.+.|. ||+..|..+.++.|.+-|..+++...++.-
T Consensus 179 --~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 179 --PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp --ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred --ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 11235677887 898888888899999999999998887753
No 265
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.45 E-value=3 Score=47.46 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=25.8
Q ss_pred cEEEEEcCCCC---EEEEEecCCeEEEEEcCCCCcceEEEE
Q 003356 259 AVCASIAPEQQ---ILAVGTRRGVVELYDLAESASLIRTVS 296 (827)
Q Consensus 259 ~v~va~sp~~~---lla~g~~dg~v~vw~~~~~~~~~~~l~ 296 (827)
++.+...++|+ +++.++.+|.+.+.|..+ ++.+....
T Consensus 304 p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~~w~~~ 343 (571)
T 2ad6_A 304 MVLTDQPVNGKMTPLLSHIDRNGILYTLNREN-GNLIVAEK 343 (571)
T ss_dssp CEEEEEEETTEEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred CEEEecccCCcEEEEEEEeCCCcEEEEEECCC-CCEEeeec
Confidence 33344445774 678899999999999888 66554443
No 266
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.09 E-value=1.7 Score=44.74 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=47.8
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCc--EEEEeccC
Q 003356 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG--LTVWSVSG 338 (827)
Q Consensus 261 ~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~--v~vWs~~~ 338 (827)
.++++++++++++-..++.|..|+.+. +....+.. .+....++++|||+++++....+. |..++..+
T Consensus 36 gia~~~~g~lyv~d~~~~~I~~~d~~g--~~~~~~~~---------~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 36 NLASAPDGTIFVTNHEVGEIVSITPDG--NQQIHATV---------EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTC--CEEEEEEC---------SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred eEEECCCCCEEEEeCCCCeEEEECCCC--ceEEEEeC---------CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC
Confidence 488999999877777888988887653 33333322 346889999999997766654334 55566666
Q ss_pred Cee
Q 003356 339 CRL 341 (827)
Q Consensus 339 ~~l 341 (827)
+++
T Consensus 105 g~~ 107 (306)
T 2p4o_A 105 GTV 107 (306)
T ss_dssp SCE
T ss_pred CeE
Confidence 654
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.08 E-value=3.4 Score=47.29 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=23.2
Q ss_pred CCC---CEEEEEecCCeEEEEEcCCCCcceEEEE
Q 003356 266 PEQ---QILAVGTRRGVVELYDLAESASLIRTVS 296 (827)
Q Consensus 266 p~~---~lla~g~~dg~v~vw~~~~~~~~~~~l~ 296 (827)
.+| ..++.++.+|.+.+.|..+ ++.+-...
T Consensus 318 ~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~ 350 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGIVYTLDRTD-GALVSANK 350 (599)
T ss_dssp TTSCEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred cCCcEEEEEEEECCCcEEEEEECCC-CCEeeccc
Confidence 567 5788899999999999988 66654433
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.07 E-value=3.1 Score=42.76 Aligned_cols=108 Identities=9% Similarity=-0.004 Sum_probs=56.7
Q ss_pred EEEEeCCcEEEEeeccCccccceeeccce-ecCCCCcEE-EEEcCCCCEEEEEecC-C-eEEEEEcCCCCcceEEEEeec
Q 003356 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK-ELGSGDAVC-ASIAPEQQILAVGTRR-G-VVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~-va~sp~~~lla~g~~d-g-~v~vw~~~~~~~~~~~l~~~~ 299 (827)
+++.++|+++++....+.+..++...... ........+ +++.++|+++++.... + .|..++..+ ++.. .+...
T Consensus 37 ia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~~~-~~~~~- 113 (306)
T 2p4o_A 37 LASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTVE-TLLTL- 113 (306)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCEE-EEEEC-
T ss_pred EEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-CeEE-EEEeC-
Confidence 34556677666554555554444322110 111122344 9999999976665433 2 455556554 4432 22221
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCC
Q 003356 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~ 339 (827)
+ .......++..+++..+++-..++.|.++|..++
T Consensus 114 -~----~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 114 -P----DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp -T----TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred -C----CccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 0 1122345555667666666556788888887654
No 269
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.06 E-value=0.18 Score=54.18 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=72.2
Q ss_pred EEEEecceEEEEEccCeEEEeecCCcee-----------EEEEEEeChHhhhhcCcccEEEEcCCcc---EEEEEecCcE
Q 003356 25 IYFKVNNGLLLIASPCHIELWSSSQHKV-----------RLGKYKRDSESVQREGENLQAVWSPDTK---LIAVVTSSLY 90 (827)
Q Consensus 25 v~fspdg~lla~~~~~~v~IW~~~~~~~-----------~l~~~~r~~~s~~~~G~~~~v~wSPDg~---~lav~t~dg~ 90 (827)
+..||+|++||..++.+|.|-....+.. +...+.-.+.......+++.+.|+|-|. .|+|-|+|+.
T Consensus 71 lvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~ 150 (452)
T 3pbp_A 71 VISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT 150 (452)
T ss_dssp EEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC
T ss_pred EEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE
Confidence 5699999999999999999988731210 1111111110011246689999999875 8999999999
Q ss_pred EEEEEEEecCceeecCCCCCCCceeeeEeeE-eecccccccccceEEEeecCCCeEEEEe--cCCcEEEE
Q 003356 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLV-LNEQLPFAEKGLSVSNIVSDNKHMLLGL--SDGSLYSI 157 (827)
Q Consensus 91 l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~v~~~~~d~~~llv~t--~dg~i~~~ 157 (827)
|++||+..+.. .+. .+... ..+.......+..-.||..++-.|.+.+ .+|.|+.+
T Consensus 151 Ir~yDl~~s~~-----------~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 151 ITMFDILNSQE-----------KPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEETTCTTS-----------CCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEcccCCC-----------CCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999975221 111 11000 0000000112333446777777777755 88998775
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=94.89 E-value=4.2 Score=42.92 Aligned_cols=94 Identities=11% Similarity=0.078 Sum_probs=53.9
Q ss_pred cEEEEEcCC-CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCC-EEEEEEcC-CcEEEEe
Q 003356 259 AVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKS-RGLTVWS 335 (827)
Q Consensus 259 ~v~va~sp~-~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~-~Lasg~~D-g~v~vWs 335 (827)
+.-+++.+. +.+..+-...+.|.+.+.+. .....+... .......+++.|++. +..+-+.+ +.|...+
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~~-------~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLWQ-------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECT-------TCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCC--CceEEEEeC-------CCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 344888875 45555556678999988764 323322210 234568899999554 45555555 6788888
Q ss_pred ccCCeeEEEeccccccceeeeeecCCC
Q 003356 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+.+.... .+...+...-+.++++|++
T Consensus 189 ~dG~~~~-~~~~~~~~~PnGla~d~~~ 214 (349)
T 3v64_C 189 MDGSGRR-IIADTHLFWPNGLTIDYAG 214 (349)
T ss_dssp TTSCSCE-ESCCSSCSCEEEEEEETTT
T ss_pred CCCCCcE-EEEECCCCCcceEEEeCCC
Confidence 7764322 2221112334566776654
No 271
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.43 E-value=5.5 Score=41.44 Aligned_cols=135 Identities=9% Similarity=0.047 Sum_probs=69.5
Q ss_pred cEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCCC
Q 003356 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES 288 (827)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~~ 288 (827)
.+..|.+++ +...++..+|.++. +.|+. +.|...... ..+..... +++.+++++++++. +|. +|...+.
T Consensus 81 ~~~~i~~~~--~~~~~~g~~g~i~~--S~DgG-~tW~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~-~g~--v~~S~Dg 150 (327)
T 2xbg_A 81 RFNSVSFQG--NEGWIVGEPPIMLH--TTDGG-QSWSQIPLD--PKLPGSPRLIKALGNGSAEMITN-VGA--IYRTKDS 150 (327)
T ss_dssp EEEEEEEET--TEEEEEEETTEEEE--ESSTT-SSCEECCCC--TTCSSCEEEEEEEETTEEEEEET-TCC--EEEESST
T ss_pred cEEEEEecC--CeEEEEECCCeEEE--ECCCC-CCceECccc--cCCCCCeEEEEEECCCCEEEEeC-Ccc--EEEEcCC
Confidence 466666654 22333445565444 33322 345543321 01122233 77767778777764 554 3334443
Q ss_pred CcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 289 ~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
++....... .+.+.+..+++.|++.+++++.. |.+..-+-.++.....+.......+..+.+.+++
T Consensus 151 G~tW~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g 216 (327)
T 2xbg_A 151 GKNWQALVQ-------EAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDG 216 (327)
T ss_dssp TSSEEEEEC-------SCCCCEEEEEECTTSCEEEEETT-SSEEEEECTTCSSCEEEECCSSSCEEEEEECTTS
T ss_pred CCCCEEeec-------CCCcceEEEEEcCCCcEEEEECC-CcEEEEeCCCCCceeECCCCCCCccceeEECCCC
Confidence 444443332 14567899999999998887754 5443322222333332222113456677777766
No 272
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.42 E-value=14 Score=45.84 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=62.4
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCC
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~ 301 (827)
.++-+++.|=.++.......+..|... +....+.++.+. .+++.++ ++.+.++++++ ++... ....+
T Consensus 485 ~ivQVt~~~Irli~~~~~~~~~~w~~p------~~~~I~~As~n~--~~vvva~-g~~l~~fel~~-~~L~~-~~~~~-- 551 (1158)
T 3ei3_A 485 QLIQITSASVRLVSQEPKALVSEWKEP------QAKNISVASCNS--SQVVVAV-GRALYYLQIHP-QELRQ-ISHTE-- 551 (1158)
T ss_dssp EEEEEESSCEEEEESSSCCEEEEECCT------TCCCCCEEEECS--SEEEEEE-TTEEEEEEEET-TEEEE-EEEEE--
T ss_pred eEEEEecCEEEEEECCCCeEEEEEECC------CCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeC-Cceee-ecccC--
Confidence 455566666554432212222234321 112344466553 4666664 78898888876 43222 22222
Q ss_pred CCCCCCCCeEEEEECCC------CCEEEEEEc-CCcEEEEeccCCeeEE
Q 003356 302 YSMDDTGPVSCIAWTPD------NSAFAVGWK-SRGLTVWSVSGCRLMS 343 (827)
Q Consensus 302 ~~~~h~~~V~~l~~spD------g~~Lasg~~-Dg~v~vWs~~~~~l~~ 343 (827)
-.+.|.|+++.|. +.++|+|.. |++++|+++.+-..+.
T Consensus 552 ----l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 552 ----MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH 596 (1158)
T ss_dssp ----CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred ----CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence 2457999999874 469999986 9999999998655443
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=94.27 E-value=5 Score=40.24 Aligned_cols=80 Identities=10% Similarity=0.126 Sum_probs=53.5
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCC-CCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 003356 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (827)
Q Consensus 257 ~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~-~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs 335 (827)
.+.--+++.+++.++++.-.++.+.++++...+. +........+. ..........|+|+|++..|.++.+.....+|.
T Consensus 70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~ 148 (255)
T 3qqz_A 70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSE-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYK 148 (255)
T ss_dssp SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEE
T ss_pred CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe-eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEE
Confidence 3433488888888777766778999999887332 33223322222 122455689999999998888887766677777
Q ss_pred cc
Q 003356 336 VS 337 (827)
Q Consensus 336 ~~ 337 (827)
..
T Consensus 149 ~~ 150 (255)
T 3qqz_A 149 VN 150 (255)
T ss_dssp EE
T ss_pred Ec
Confidence 75
No 274
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.17 E-value=10 Score=43.33 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=46.5
Q ss_pred EEEcCCCCE----EEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCC-CCCCeEEEEECCCCCEEEEEE-----cCCcE
Q 003356 262 ASIAPEQQI----LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD-DTGPVSCIAWTPDNSAFAVGW-----KSRGL 331 (827)
Q Consensus 262 va~sp~~~l----la~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~-h~~~V~~l~~spDg~~Lasg~-----~Dg~v 331 (827)
++++|.+.. |.+++.|+.+..+|..+ ++.+-............ ...++ + .+|..++.++ .++.|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~T-G~~~W~~~~~~~~~~~~~~ssP~--v---~~g~V~vg~~g~e~g~~g~v 184 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAET-GETVWKVENSDIKVGSTLTIAPY--V---VKDKVIIGSSGAELGVRGYL 184 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCBCCSCCE--E---ETTEEEECCBCGGGTCCCEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCC-CCEEEeecCCCCCccceeecCCE--E---ECCEEEEEecccccCCCCeE
Confidence 566544444 78889999999999988 66554433311000000 11111 1 1555444332 37899
Q ss_pred EEEeccCCeeEEEecc
Q 003356 332 TVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~~ 347 (827)
+.+|..+|+++.+...
T Consensus 185 ~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 185 TAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEETTTCCEEEEEES
T ss_pred EEEECCCCcEEEEEcC
Confidence 9999999888776543
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=93.85 E-value=6 Score=39.65 Aligned_cols=216 Identities=9% Similarity=0.017 Sum_probs=110.1
Q ss_pred eEEEEEecce-EEEEE-ccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 003356 23 QIIYFKVNNG-LLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (827)
Q Consensus 23 ~vv~fspdg~-lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~ 100 (827)
+-++++|+++ ++|+. .+.+|...+.. +..+.... +..++..-.+++.+|+.++++.-.++.+.+|++....
T Consensus 30 SGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~-----l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 30 SSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIP-----LDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp EEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEE-----CSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred ceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEe-----cCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 4488999865 55545 44566666662 33333321 2234566689999999866665566788888886433
Q ss_pred ceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccc
Q 003356 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (827)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~ 180 (827)
... .+....+ ............-.++.+.+++++++.......++.|++..... .+.
T Consensus 103 ~i~----------~~~~~~~--~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~-----------~l~ 159 (255)
T 3qqz_A 103 EVK----------ILKKIKI--PLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN-----------ELH 159 (255)
T ss_dssp CEE----------EEEEEEC--CCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS-----------CCE
T ss_pred eee----------eeeeecc--ccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC-----------cee
Confidence 100 0011111 00000011111223455566788888776666666676421110 000
Q ss_pred eecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccc-cceeeccce-e-cCCC
Q 003356 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDK-E-LGSG 257 (827)
Q Consensus 181 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~-~~~~~~~~~-~-~~h~ 257 (827)
.. . + ..... ......+..+++++..+.+.+++..++.++.-..++.+. .+.+..+.. + ....
T Consensus 160 i~-~--~--~~~~~----------~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~ 224 (255)
T 3qqz_A 160 IS-K--D--KALQR----------QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIK 224 (255)
T ss_dssp EE-E--C--HHHHH----------TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCC
T ss_pred ee-c--c--hhhcc----------ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccC
Confidence 00 0 0 00000 001112456788888888888888888777655555433 333322110 0 1122
Q ss_pred CcEEEEEcCCCCEEEEEecCCeEEEEE
Q 003356 258 DAVCASIAPEQQILAVGTRRGVVELYD 284 (827)
Q Consensus 258 ~~v~va~sp~~~lla~g~~dg~v~vw~ 284 (827)
.+-=++|.++|++.++ ++-+.+..|.
T Consensus 225 qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 225 QAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp SEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred CCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 3334899999986666 5555555543
No 276
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.85 E-value=7.6 Score=40.85 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=36.6
Q ss_pred EEEEecceEEEEEc-cCeEEEeecCCceeEEEEEEeChHh-hhhcCcccEEEEcCC---ccEEEEE
Q 003356 25 IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSES-VQREGENLQAVWSPD---TKLIAVV 85 (827)
Q Consensus 25 v~fspdg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~s-~~~~G~~~~v~wSPD---g~~lav~ 85 (827)
++|.|||++|++-. .++|.+++.+ .+.. ......+.- ....+....++++|| +..|++.
T Consensus 37 ia~~pdG~llVter~~G~I~~v~~~-~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 37 LAPLPGGDLLVSSRDEATITRVDAK-TGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTT-TCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred EEEcCCCcEEEEEecCCEEEEEECC-CCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 78999999998886 7888888753 2221 112111111 123456689999997 4566654
No 277
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=93.77 E-value=3.6 Score=46.78 Aligned_cols=61 Identities=8% Similarity=-0.093 Sum_probs=41.1
Q ss_pred CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 277 dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
+|.|..||..+ ++.+-+... ..++.+......|..+++++.|+.++.+|..+++++.++.-
T Consensus 443 ~g~l~a~D~~t-G~~~W~~~~---------~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 443 MGQIRAFDLTT-GKAKWTKWE---------KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CEEEEEECTTT-CCEEEEEEE---------SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEEECCC-CCEEEEecC---------CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 47888888877 555444443 12222222233566777799999999999999998877654
No 278
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.70 E-value=12 Score=42.57 Aligned_cols=83 Identities=18% Similarity=0.138 Sum_probs=54.6
Q ss_pred EEEcCCCCEEEEEec--------------------C----CeEEEEEcCCCCcceEEEEeec---CCCCCCCCCCeEEEE
Q 003356 262 ASIAPEQQILAVGTR--------------------R----GVVELYDLAESASLIRTVSLYD---WGYSMDDTGPVSCIA 314 (827)
Q Consensus 262 va~sp~~~lla~g~~--------------------d----g~v~vw~~~~~~~~~~~l~~~~---~~~~~~h~~~V~~l~ 314 (827)
.+++|+..++.++.. | +.|..+|..+ ++.+-..+... |.+. ....++. +.
T Consensus 251 ~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T-G~~~W~~q~~~~d~wd~~-~~~~p~l-~~ 327 (582)
T 1flg_A 251 ASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS-GEVKWFYQHTPNDAWDFS-GNNELVL-FD 327 (582)
T ss_dssp CEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT-CCEEEEEESSTTCCSCCC-CCCCCEE-EE
T ss_pred ceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC-CCEEEEEeCCCCCccccc-CCCCcEE-Ee
Confidence 678888888887763 2 6899999888 66555544311 1110 0122332 22
Q ss_pred EC-CCCC---EEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 315 WT-PDNS---AFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 315 ~s-pDg~---~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
.. .||+ .++.++.+|.+.++|..+++++.....
T Consensus 328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred eecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 22 5784 788899999999999999988876654
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=93.31 E-value=11 Score=40.97 Aligned_cols=93 Identities=5% Similarity=0.022 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCEEEEEec-CC----eEEEEEcCCCCcce--EEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCc
Q 003356 259 AVCASIAPEQQILAVGTR-RG----VVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRG 330 (827)
Q Consensus 259 ~v~va~sp~~~lla~g~~-dg----~v~vw~~~~~~~~~--~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~ 330 (827)
+..++++++++.|.++.. ++ .+.+++. + +... ..+.. ......++++| +|.++++-..++.
T Consensus 181 P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~-g~~~~~~~l~~---------~~~p~giavdp~~g~lyv~d~~~~~ 249 (430)
T 3tc9_A 181 VRTICWTHEADSMIITNDQNNNDRPNNYILTR-E-SGFKVITELTK---------GQNCNGAETHPINGELYFNSWNAGQ 249 (430)
T ss_dssp EEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G-GTSCSEEEEEE---------CSSCCCEEECTTTCCEEEEETTTTE
T ss_pred cceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C-Cceeeeeeecc---------CCCceEEEEeCCCCEEEEEECCCCE
Confidence 444999999995555543 22 3333333 2 3222 23332 12346788999 7887777777889
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 331 v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
|..++..++.............-..++++|++
T Consensus 250 V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG 281 (430)
T 3tc9_A 250 VFRYDFTTQETTPLFTIQDSGWEFHIQFHPSG 281 (430)
T ss_dssp EEEEETTTTEEEEEEECSSSSCCEEEEECTTS
T ss_pred EEEEECCCCcEEEEEEcCCCCcceeEEEcCCC
Confidence 99999987764222211111235578888887
No 280
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.85 E-value=11 Score=39.72 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=38.4
Q ss_pred cEE-EEEcC-------CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE
Q 003356 259 AVC-ASIAP-------EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (827)
Q Consensus 259 ~v~-va~sp-------~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~ 326 (827)
+.+ ++|.. ++++++.....+.|...+++. ++........ .+-.+.+..+++.|||.+.++..
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~-~~~~~~~~~~-----~~~~~rp~~v~~~pdG~lyv~td 341 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNG-DKVTEDGRIL-----TDRGQRIRDVRTGPDGYLYVLTD 341 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEET-TEEEEEEEES-----GGGCCCEEEEEECTTSCEEEEEC
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCC-CeEeeeEEcc-----cCCCCceeEEEECCCCcEEEEEe
Confidence 444 77753 577777777778887777765 4332221110 01235789999999999766543
No 281
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.60 E-value=2.3 Score=45.74 Aligned_cols=177 Identities=11% Similarity=0.107 Sum_probs=92.2
Q ss_pred CCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec-CCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe-eEE
Q 003356 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMS 343 (827)
Q Consensus 266 p~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~-~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~-l~~ 343 (827)
.+|.-+.++ .++.||.-++.+ ...-+.++... . --+.|..+..||+|++||..+. .+|.|-.+..+. ...
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~-~~~Yk~L~~~~~i-----~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLT-DSLYHSLNFSRHL-----VLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVE 101 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTT-CSSCEEEECTTTC-----CCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCC
T ss_pred cCCCEEEEE-ECCEEEEEECCC-CCcceEEecCccc-----ccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCc
Confidence 345555443 357888888875 33455555410 0 0225788999999999999977 689998887331 000
Q ss_pred Eecccccccee--eeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEecceeeeecccCCCeeeeEEEE
Q 003356 344 TIRQISLSSIS--SPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIY 421 (827)
Q Consensus 344 tl~~~~~~~v~--s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~ 421 (827)
.... .+.+. +....+.. ..--+.+.-..|.+-+.. +..++.-..|+++++|++..
T Consensus 102 ~~~~--~~~~q~~ty~l~~~~----~~~~s~I~qVlWHPl~~~-----------------ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 102 DVSI--QDAFQIFHYSIDEEE----VGPKSSIKKVLFHPKSYR-----------------DSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp CHHH--HHTTEEEEEEGGGCC------CCCCEEEEEECTTBGG-----------------GCEEEEEETTSCEEEEETTC
T ss_pred cccc--ccccceeEEEcCCcc----cCCCCceeEEEeccccCC-----------------CCeEEEEecCCEEEEEEccc
Confidence 0000 00011 00010100 000011234455554322 22344444566666666554
Q ss_pred cCCeEEEEecCCCCcceEEEeeec-e--eeccCCCcEEEEEEcCCCCEEEEEe--CCceE--EEEcCCCeEE
Q 003356 422 GEDRLLVVQSEDTDELKILHLNLP-V--SYISQNWPVQHVAASKDGMFLAVAG--LHGLI--LYDIRQKKWR 486 (827)
Q Consensus 422 ~~~~~~~~~~~d~~~~~w~~~~~p-~--~~~~~~~~I~~va~SpdG~~lavag--~dg~i--iwd~~t~~w~ 486 (827)
..++ +. .++.. . ........|.+++|+++|..|.+.. +.|-| +|-.--.+|.
T Consensus 159 s~~~---------P~----~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP~LP~~~~ 217 (452)
T 3pbp_A 159 SQEK---------PI----VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFYPFLPSVLL 217 (452)
T ss_dssp TTSC---------CE----EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEESSCCCSEEE
T ss_pred CCCC---------Cc----chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEECCCCccccc
Confidence 3221 00 00000 0 1112235689999999999888866 77877 7777777776
No 282
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.51 E-value=12 Score=39.41 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=43.8
Q ss_pred EEEcCCCCEEEEEe-cCCeEEEEEcCCCCcce--EEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcC-CcEEEEec
Q 003356 262 ASIAPEQQILAVGT-RRGVVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS-RGLTVWSV 336 (827)
Q Consensus 262 va~sp~~~lla~g~-~dg~v~vw~~~~~~~~~--~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~D-g~v~vWs~ 336 (827)
++||||++.+.++. ..+.|..|+++..+... +.+ . ..+..-.++..+ +|++.+++..+ +.|..|+.
T Consensus 226 ia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~--------~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 226 INISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-S--------FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-E--------CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred ceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-e--------CCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 89999998777765 56899999997533321 223 1 245567899999 59987766543 23333444
Q ss_pred c
Q 003356 337 S 337 (827)
Q Consensus 337 ~ 337 (827)
.
T Consensus 297 ~ 297 (355)
T 3sre_A 297 E 297 (355)
T ss_dssp T
T ss_pred C
Confidence 3
No 283
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=91.75 E-value=16 Score=39.01 Aligned_cols=92 Identities=10% Similarity=0.063 Sum_probs=51.8
Q ss_pred EEEEcCCC-CEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEE-EEEcC-CcEEEEecc
Q 003356 261 CASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS-RGLTVWSVS 337 (827)
Q Consensus 261 ~va~sp~~-~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~La-sg~~D-g~v~vWs~~ 337 (827)
-+++.+.+ .+..+-..++.|.+.+.+. .....+... .......+++.|++..|. +-+.+ +.|...++.
T Consensus 163 glavd~~~g~lY~~d~~~~~I~~~~~dg--~~~~~l~~~-------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 163 GLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLWQ-------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp CEEEETTTTEEEEEETTTTEEEECBTTS--CSCEEEECS-------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EEEEEeCCCeEEEEcCCCCeEEEEeCCC--CceEEeecC-------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 37888754 4555555667888877654 333322220 234568899999665544 44444 678777877
Q ss_pred CCeeEEEeccccccceeeeeecCCC
Q 003356 338 GCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+......... +...-+.++++|++
T Consensus 234 G~~~~~~~~~-~~~~PnGlavd~~~ 257 (386)
T 3v65_B 234 GSGRRIIADT-HLFWPNGLTIDYAG 257 (386)
T ss_dssp SCSCEEEECS-SCSCEEEEEEEGGG
T ss_pred CCCcEEEEEC-CCCCeeeEEEeCCC
Confidence 6533222221 12334566776654
No 284
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.65 E-value=18 Score=39.55 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=36.8
Q ss_pred EEEEecceEEEEEccC-eEEEeecCCceeEEEEEEeChHhh---hhcCcccEEEEcCC---ccEEEEEec
Q 003356 25 IYFKVNNGLLLIASPC-HIELWSSSQHKVRLGKYKRDSESV---QREGENLQAVWSPD---TKLIAVVTS 87 (827)
Q Consensus 25 v~fspdg~lla~~~~~-~v~IW~~~~~~~~l~~~~r~~~s~---~~~G~~~~v~wSPD---g~~lav~t~ 87 (827)
++|.|||++|++-..+ +|.+++.. .+. ......-.+.+ ...+....++|+|| +..|++..+
T Consensus 32 ~a~~pdG~l~V~e~~gg~I~~~~~~-~g~-~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 32 LLWGPDNQIWLTERATGKILRVNPE-SGS-VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTT-TCC-EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred EEEcCCCcEEEEEcCCCEEEEEECC-CCc-EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 7899999999887664 67777642 221 11111111111 12355678999997 667776654
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=90.79 E-value=23 Score=39.14 Aligned_cols=76 Identities=13% Similarity=0.087 Sum_probs=47.3
Q ss_pred CCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec----------CCCCCC------CCCCeEEEEECCC-CCEEEEEEcC
Q 003356 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYD----------WGYSMD------DTGPVSCIAWTPD-NSAFAVGWKS 328 (827)
Q Consensus 266 p~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~----------~~~~~~------h~~~V~~l~~spD-g~~Lasg~~D 328 (827)
+++.+.++=..+..||.++ .+ + .+.++-+.- +++..+ .-..-..|+++++ |.+.++=..+
T Consensus 389 ~~g~lyVaD~~N~rIr~i~-~~-G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N 465 (496)
T 3kya_A 389 EEYDFYFVDRLNFCVRKVT-PE-G-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG 465 (496)
T ss_dssp CCEEEEEEEGGGTEEEEEC-TT-C-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTT
T ss_pred CCCeEEEEECCCCEEEEEe-CC-C-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCC
Confidence 5677777777788999987 33 3 556665531 122111 1223578999997 7776666677
Q ss_pred CcEEEEeccCCeeEEE
Q 003356 329 RGLTVWSVSGCRLMST 344 (827)
Q Consensus 329 g~v~vWs~~~~~l~~t 344 (827)
+.||.+++.+..+...
T Consensus 466 ~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 466 HTIRTISMEQEENVAG 481 (496)
T ss_dssp TEEEEEEECCCC----
T ss_pred CEEEEEECCCCccccc
Confidence 8899999987765543
No 286
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=90.24 E-value=17 Score=36.77 Aligned_cols=66 Identities=18% Similarity=0.373 Sum_probs=37.8
Q ss_pred CCCEEEEEeCCc-----eE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeCC
Q 003356 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 463 dG~~lavag~dg-----~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~~ 529 (827)
+++.++.||.++ .+ .||+.+++|.........+... ......+.+++.+++........+..|...
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV-GATVLRGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce-eEEEECCEEEEEcCcCCCcccccEEEEcCC
Confidence 677888887643 46 9999999999876443322111 112234456666654433333455666553
No 287
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=90.20 E-value=21 Score=37.90 Aligned_cols=78 Identities=14% Similarity=0.080 Sum_probs=47.8
Q ss_pred cEEEEEcCCCCEEEEE-ecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 259 AVCASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 259 ~v~va~sp~~~lla~g-~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
+.-++++|++..|..+ +..+.|..++++. ...+.+... ..+.-..+++ .++.+..+-+..+.|..++..
T Consensus 248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~~-------~~~~P~giav-~~~~ly~td~~~~~V~~~~~~ 317 (386)
T 3v65_B 248 PNGLTIDYAGRRMYWVDAKHHVIERANLDG--SHRKAVISQ-------GLPHPFAITV-FEDSLYWTDWHTKSINSANKF 317 (386)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEECTTS--CSCEEEECS-------SCSSEEEEEE-ETTEEEEEETTTTEEEEEETT
T ss_pred eeeEEEeCCCCEEEEEECCCCEEEEEeCCC--CeeEEEEEC-------CCCCceEEEE-ECCEEEEeeCCCCeEEEEECC
Confidence 3348999866655554 4567898888764 333333221 2234566777 456677777777888888866
Q ss_pred CCeeEEEec
Q 003356 338 GCRLMSTIR 346 (827)
Q Consensus 338 ~~~l~~tl~ 346 (827)
+++...++.
T Consensus 318 ~G~~~~~i~ 326 (386)
T 3v65_B 318 TGKNQEIIR 326 (386)
T ss_dssp TCCSCEEEE
T ss_pred CCcceEEEc
Confidence 665555543
No 288
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=89.83 E-value=20 Score=36.91 Aligned_cols=78 Identities=6% Similarity=-0.080 Sum_probs=47.4
Q ss_pred EEEEEcCCCCEEEEE-ecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 260 VCASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 260 v~va~sp~~~lla~g-~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
.-++++|++..|..+ +..+.|..++.+. ...+.+.... +....-..+++. ++.+..+-+..+.|..++..+
T Consensus 167 ~gla~d~~~~~lY~~D~~~~~I~~~d~dg--~~~~~~~~~~-----~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 167 NGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDE-----KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECT-----TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred eEEEEeccCCEEEEEECCCCeEEEEecCC--CceEEEeecC-----CccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCC
Confidence 348999876665554 4567999999864 3333332210 012234566664 466667777778888888866
Q ss_pred CeeEEEe
Q 003356 339 CRLMSTI 345 (827)
Q Consensus 339 ~~l~~tl 345 (827)
++....+
T Consensus 239 g~~~~~i 245 (316)
T 1ijq_A 239 GSDVNLL 245 (316)
T ss_dssp CCCCEEE
T ss_pred CcceEEE
Confidence 6544444
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=89.82 E-value=4.5 Score=44.13 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=47.3
Q ss_pred EEEEcC-CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEE-EEEEcCCcEEEEeccC
Q 003356 261 CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLTVWSVSG 338 (827)
Q Consensus 261 ~va~sp-~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~L-asg~~Dg~v~vWs~~~ 338 (827)
.++++| ++.+.++-..++.|..++.+. .......... ....-..++|+|||++| ++-...+.|..++..+
T Consensus 230 giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~-------~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 230 GAETHPINGELYFNSWNAGQVFRYDFTT-QETTPLFTIQ-------DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEECS-------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEEcC-------CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 478999 788777777788999999875 3321222210 11335789999999954 4445667888888764
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=89.28 E-value=27 Score=37.79 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=41.3
Q ss_pred cCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec----CCCCCC------CCCCeEEEEEC-CCCCEEEEEEcCCcEEE
Q 003356 265 APEQQILAVGTRRGVVELYDLAESASLIRTVSLYD----WGYSMD------DTGPVSCIAWT-PDNSAFAVGWKSRGLTV 333 (827)
Q Consensus 265 sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~----~~~~~~------h~~~V~~l~~s-pDg~~Lasg~~Dg~v~v 333 (827)
.+++.+.++=..++.|+.++. + + .+.++-+.. +++..+ .-..-..|+++ ++|.++++=..++.|+.
T Consensus 352 d~~g~lyvaD~~n~~I~~~~~-~-G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~ 428 (433)
T 4hw6_A 352 EDEYDFYFCDRDSHTVRVLTP-E-G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRK 428 (433)
T ss_dssp SCCEEEEEEETTTTEEEEECT-T-S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred CCCCcEEEEECCCCEEEEECC-C-C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence 677888777777889999874 2 3 444444321 111111 11235788999 57766666556667777
Q ss_pred Eec
Q 003356 334 WSV 336 (827)
Q Consensus 334 Ws~ 336 (827)
.++
T Consensus 429 i~~ 431 (433)
T 4hw6_A 429 IAP 431 (433)
T ss_dssp EEE
T ss_pred Eec
Confidence 665
No 291
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=89.21 E-value=21 Score=36.27 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=38.4
Q ss_pred CCCEEEEEeCCc-----eE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCCCcEEEEEeeCC
Q 003356 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 463 dG~~lavag~dg-----~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~~lrly~~~ 529 (827)
+++.++.||.++ .+ .||+.+++|.........+.. .......+.++++++++......++..|+..
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT-VKCAAVGSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC-CEEEEETTEEEEEECBCSSSBCCEEEEEETT
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc-eeEEEECCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 677777877643 45 999999999987654332211 1112234456666655443333456666553
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=87.59 E-value=25 Score=36.50 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=47.1
Q ss_pred EEEEcCC-CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCC--CCCCCCeEEEEE---CCCCCEEEEEEc-------
Q 003356 261 CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS--MDDTGPVSCIAW---TPDNSAFAVGWK------- 327 (827)
Q Consensus 261 ~va~sp~-~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~--~~h~~~V~~l~~---spDg~~Lasg~~------- 327 (827)
+++|+++ +.+.++...+|+|..|+... +..... ... ..+ -+....+..|.| -|+|+++++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~-~~~~~~-~~~--~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKT-QSHFNV-VID--GASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTT-CCEEEE-CCT--TTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCC-CeEEEE-ecC--CccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 4788774 44555555799999999864 333222 210 001 001123578999 689888886542
Q ss_pred ------CCcEEEEecc---CCeeE
Q 003356 328 ------SRGLTVWSVS---GCRLM 342 (827)
Q Consensus 328 ------Dg~v~vWs~~---~~~l~ 342 (827)
++.+..+|+. +++.+
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~ 116 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPV 116 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCS
T ss_pred ccccCCCCEEEEEcCCcCCCCCEE
Confidence 5778888988 55443
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=87.40 E-value=29 Score=35.93 Aligned_cols=76 Identities=8% Similarity=0.025 Sum_probs=41.0
Q ss_pred cEEEEEEcCCcceEEEEEeC-CcEEEEeeccCccccceeeccceecCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEcCC
Q 003356 210 AIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE 287 (827)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~d-G~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-va~sp~~~lla~g~~dg~v~vw~~~~ 287 (827)
...+|+.++..+..+..+-- +.++.+..+...+..|....+. ........ ++++|+|.+|++...+|.+..+|+..
T Consensus 138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~--~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 138 GVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGN--GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCC--SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCC--cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 36666655555444444333 4433333222223334322210 01111223 89999999888877799999999875
No 294
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=87.23 E-value=27 Score=35.28 Aligned_cols=64 Identities=25% Similarity=0.421 Sum_probs=36.7
Q ss_pred CCCEEEEEeCCc-----eE-EEEcCCCeEEeeCCccceEEEEEEEEE-EeCCEEEEEEEeeCCCcEEEEEeeC
Q 003356 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLL-WLGKIIVVCNYIDSSNTYELLFYPR 528 (827)
Q Consensus 463 dG~~lavag~dg-----~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~-W~~~~li~~~~~~~~~~~~lrly~~ 528 (827)
+++.++.||.++ .+ .||+.+++|.........+... +++ ..+.+++.++.+.......+.+|+.
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~--~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA--GVCAVNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC--EEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC--eEEEECCEEEEECCcCCCcccccEEEEcC
Confidence 678888888653 46 9999999999876443322111 222 2344566664433222334555554
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=86.09 E-value=60 Score=38.19 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=56.0
Q ss_pred cEEEEEcCCCC-EEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEE-EEEcC-CcEEEEe
Q 003356 259 AVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS-RGLTVWS 335 (827)
Q Consensus 259 ~v~va~sp~~~-lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~La-sg~~D-g~v~vWs 335 (827)
+.-+|+.+.++ +..+-...+.|.+.+++. ...+++-.. .......|++.|.+..|. +-+.+ +.|.+.+
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG--~~~~~l~~~-------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~ 543 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRE-------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 543 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEEEEEC-------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCC--CeEEEEEeC-------CCCCcceEEEecCCCCEEEecCCCCCeEEEEe
Confidence 34488887764 555556678999988864 333333321 234578999999755444 44333 6788888
Q ss_pred ccCCeeEEEeccccccceeeeeecCCC
Q 003356 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+.|......+. .+...-+.+++++..
T Consensus 544 ~dG~~~~~lv~-~~l~~P~GLavD~~~ 569 (791)
T 3m0c_C 544 LNGVDIYSLVT-ENIQWPNGITLDLLS 569 (791)
T ss_dssp TTSCCEEEEEC-SSCSCEEEEEEETTT
T ss_pred cCCCceEEEEe-CCCCCceEEEEecCC
Confidence 87654333222 223445667776554
No 296
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=84.51 E-value=37 Score=34.40 Aligned_cols=65 Identities=17% Similarity=0.341 Sum_probs=37.3
Q ss_pred CCCEEEEEeCC-----ceE-EEEcCCCeEEeeCCccceEEEEEEEEE-EeCCEEEEEEEeeCCCcEEEEEeeCC
Q 003356 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFGDITQEQKIQSKGLL-WLGKIIVVCNYIDSSNTYELLFYPRY 529 (827)
Q Consensus 463 dG~~lavag~d-----g~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~-W~~~~li~~~~~~~~~~~~lrly~~~ 529 (827)
+++.++.||.+ ..+ .||+.+++|.........+.. .++. ..+.+++.++.+......++.+|...
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA--LGITVHQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS--CEEEEETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc--eEEEEECCEEEEEcCcCCCcccceEEEEcCC
Confidence 77788888765 346 999999999987543322211 1222 23445666654433333455566553
No 297
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=83.45 E-value=10 Score=37.01 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=41.2
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEEcCCCCc-c-e---EEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEE
Q 003356 260 VCASIAPEQQILAVGTRRGVVELYDLAESAS-L-I---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (827)
Q Consensus 260 v~va~sp~~~lla~g~~dg~v~vw~~~~~~~-~-~---~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vW 334 (827)
-.+.|.|+|.+.|+ .||.|.-++-.+.+. . + ..+... -=..+..|.+.|||.+-|+. |+.+.-+
T Consensus 91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~-------gw~~~~~lff~p~G~Lyav~--dg~lyr~ 159 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSG-------GWSGFKFLFFHPNGYLYAVH--GQQFYKA 159 (236)
T ss_dssp SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECS-------SGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccC-------CCCceEEEEECCCceEEEEe--CCcEEec
Confidence 34889999999998 679876655422111 1 1 111110 11468999999999999888 5665433
Q ss_pred e
Q 003356 335 S 335 (827)
Q Consensus 335 s 335 (827)
.
T Consensus 160 ~ 160 (236)
T 1tl2_A 160 L 160 (236)
T ss_dssp C
T ss_pred C
Confidence 3
No 298
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=82.20 E-value=56 Score=34.77 Aligned_cols=94 Identities=10% Similarity=-0.001 Sum_probs=54.2
Q ss_pred cEEEEEcC-CCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE-c-CCcEEEEe
Q 003356 259 AVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-K-SRGLTVWS 335 (827)
Q Consensus 259 ~v~va~sp-~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~-~-Dg~v~vWs 335 (827)
+.-+++.+ .+.+..+-...+.|.+.+++. .....+-.. .-.....|++.|.+..|..+. . .+.|...+
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g--~~~~~l~~~-------~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~ 231 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRE-------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 231 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTT--CSEEEEEEC-------SSCCEEEEEEETTTTEEEEEECSSSCCEEEEE
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCC--CceEEEEeC-------CCCCcceEEEecccCeEEEEeCCCCCEEEEEe
Confidence 33488887 455555556678999888764 333333221 233468999999655554443 3 36788888
Q ss_pred ccCCeeEEEeccccccceeeeeecCCC
Q 003356 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+.|......+.. +...-+.+++++++
T Consensus 232 ~dG~~~~~~~~~-~l~~P~glavd~~~ 257 (400)
T 3p5b_L 232 LNGVDIYSLVTE-NIQWPNGITLDLLS 257 (400)
T ss_dssp TTSCSCEEEECS-SCSCEEEEEEETTT
T ss_pred CCCCccEEEEEC-CCCceEEEEEEeCC
Confidence 876543222221 12345566676654
No 299
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=82.03 E-value=4.6 Score=45.99 Aligned_cols=61 Identities=7% Similarity=-0.007 Sum_probs=40.3
Q ss_pred CCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 277 dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
+|.|..||+.+ ++.+-...... +...+++ ...|.+++.|+.|+.++.||..+++++.+++.
T Consensus 465 ~G~l~A~D~~t-G~~~W~~~~~~----~~~~g~~-----~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 465 VGSLRAMDPVS-GKVVWEHKEHL----PLWAGVL-----ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SEEEEEECTTT-CCEEEEEEESS----CCCSCCE-----EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEECCC-CCEEEEecCCC----CCcccce-----EeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 57888888887 55544333310 0012221 12466788899999999999999998877654
No 300
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=81.62 E-value=15 Score=39.93 Aligned_cols=73 Identities=8% Similarity=0.165 Sum_probs=42.8
Q ss_pred CcEEEEEcCCCCEEEEEecC---Ce-EEEEEcCCCCcce--EEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCc
Q 003356 258 DAVCASIAPEQQILAVGTRR---GV-VELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRG 330 (827)
Q Consensus 258 ~~v~va~sp~~~lla~g~~d---g~-v~vw~~~~~~~~~--~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~ 330 (827)
.+..++++++|+++++-..+ .. +...+.. +... ..+.. -..-..+++.| +|.+.++-..++.
T Consensus 183 ~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~--~~~~~~~~~~~---------~~~P~giavd~~~G~lyv~d~~~~~ 251 (433)
T 4hw6_A 183 QCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA--SGFTERLSLCN---------ARGAKTCAVHPQNGKIYYTRYHHAM 251 (433)
T ss_dssp CEEEEEECTTCCEEEEECCSCTTSEEEEEECGG--GTTCCEEEEEE---------CSSBCCCEECTTTCCEEECBTTCSE
T ss_pred CccEEEECCCCCEEEEcCCCCcccceEEEEECC--CCeeccccccc---------cCCCCEEEEeCCCCeEEEEECCCCE
Confidence 34459999999955554321 12 2222222 2221 12211 22346688999 7877777767788
Q ss_pred EEEEeccCCee
Q 003356 331 LTVWSVSGCRL 341 (827)
Q Consensus 331 v~vWs~~~~~l 341 (827)
|+.++..++..
T Consensus 252 V~~~d~~~g~~ 262 (433)
T 4hw6_A 252 ISSYDPATGTL 262 (433)
T ss_dssp EEEECTTTCCE
T ss_pred EEEEECCCCeE
Confidence 99999886654
No 301
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=80.97 E-value=56 Score=33.96 Aligned_cols=78 Identities=14% Similarity=0.080 Sum_probs=46.9
Q ss_pred cEEEEEcCCCCEEEEE-ecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 259 AVCASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 259 ~v~va~sp~~~lla~g-~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
+.-++++|++..|..+ +..+.|..++.+. ...+.+-.. ..+.-..+++ .++.+..+-+..+.|...+..
T Consensus 205 PnGla~d~~~~~lY~aD~~~~~I~~~~~dG--~~~~~~~~~-------~~~~P~giav-~~~~ly~td~~~~~V~~~~~~ 274 (349)
T 3v64_C 205 PNGLTIDYAGRRMYWVDAKHHVIERANLDG--SHRKAVISQ-------GLPHPFAITV-FEDSLYWTDWHTKSINSANKF 274 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------SCSSEEEEEE-ETTEEEEEETTTTEEEEEETT
T ss_pred cceEEEeCCCCEEEEEECCCCEEEEEeCCC--CceEEEEeC-------CCCCceEEEE-ECCEEEEecCCCCeEEEEEcc
Confidence 3349999866655554 4567899988764 333332211 2233466777 456666777777788888765
Q ss_pred CCeeEEEec
Q 003356 338 GCRLMSTIR 346 (827)
Q Consensus 338 ~~~l~~tl~ 346 (827)
++.....+.
T Consensus 275 ~G~~~~~i~ 283 (349)
T 3v64_C 275 TGKNQEIIR 283 (349)
T ss_dssp TCCSCEEEE
T ss_pred CCCccEEec
Confidence 555444443
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=80.14 E-value=6.1 Score=46.12 Aligned_cols=77 Identities=9% Similarity=-0.016 Sum_probs=45.5
Q ss_pred EEEcCCCCEE-EEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 003356 262 ASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (827)
Q Consensus 262 va~sp~~~ll-a~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~ 340 (827)
++|+|++..| .+=+..+.|.+++++. ...+.+.... ....|. ..|++..+ .++.+.+..+.|..++..+++
T Consensus 545 lavd~~~~~LY~aD~~~~~I~~~d~dG--~~~~~~~~~~--~~~~~P---~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 545 ITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDE--KRLAHP---FSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECSSS--SCCEEECCCS--SSCSSC---CCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred EEEeccCCEEEEEecCCCeEEEEccCC--CceEEEEecC--CcCCCc---eEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 8999875544 4445567899988864 3333332100 001122 33444443 556666777899999988887
Q ss_pred eEEEec
Q 003356 341 LMSTIR 346 (827)
Q Consensus 341 l~~tl~ 346 (827)
...++.
T Consensus 617 ~~~~i~ 622 (699)
T 1n7d_A 617 DVNLLA 622 (699)
T ss_dssp EEECCC
T ss_pred ceEEee
Confidence 766654
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=79.76 E-value=53 Score=32.92 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=20.8
Q ss_pred CCCEEEEEeCC-----ceE-EEEcCCCeEEee
Q 003356 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVF 488 (827)
Q Consensus 463 dG~~lavag~d-----g~i-iwd~~t~~w~~f 488 (827)
+++.++.||.+ ..+ .||+++++|+..
T Consensus 253 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 253 RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp TTEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 77888888866 356 999999999875
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=79.76 E-value=61 Score=33.61 Aligned_cols=203 Identities=16% Similarity=0.204 Sum_probs=103.5
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe-
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR- 340 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~- 340 (827)
+-.||..+.||.-. ..++.++|+++ ...++.... ...|.--+|-.+.. |+--.+ ..|.-|++++..
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnlet-K~klks~~~---------~e~VvfWkWis~~~-L~lVT~-taVyHWs~~~~s~ 138 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTM---------TDDVTFWKWISLNT-VALVTD-NAVYHWSMEGESQ 138 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTT-TEEEEEEEC---------SSCEEEEEECSSSE-EEEEES-SEEEEEESSTTCC
T ss_pred eeeCCCccEEEEec-CCeEEEechHH-hhhhcceec---------CCccEEEEecCCCe-EEEEcC-CcEEEEcccCCCC
Confidence 45799999999876 77999999988 555655554 56788899987654 333333 689999998642
Q ss_pred eEEEecccc-c--cceeeeeecCCCCCCccceeecc---------eeEEEccCCceEEEEecCCcceEEEEecceeeeec
Q 003356 341 LMSTIRQIS-L--SSISSPIVKPNQDCKYEPLMSGT---------SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNR 408 (827)
Q Consensus 341 l~~tl~~~~-~--~~v~s~~~sp~~~~~~~~l~sg~---------~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~ 408 (827)
...-+.-|. . ..+-.-..+++. + -.++.|. .+-+++.+.. .-..+++|......+.. .|
T Consensus 139 P~kvFdR~~~L~~~QIInY~~d~~~--k-W~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~-----~g 209 (365)
T 2xzh_A 139 PVKMFDRHSSLAGCQIINYRTDAKQ--K-WLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKM-----EG 209 (365)
T ss_dssp CEEEEECCGGGTTCEEEEEEECTTS--C-EEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECC-----TT
T ss_pred CceeeecchhcccceEEEEEECCCC--C-EEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEec-----CC
Confidence 333332221 1 112222223332 1 1222222 2222332221 11223344333322222 11
Q ss_pred ccCCC-eeeeEEEEc-CCeEEEEecC----CCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEcC
Q 003356 409 GVSGM-TYARQVIYG-EDRLLVVQSE----DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (827)
Q Consensus 409 ~~d~~-~~~w~~~~~-~~~~~~~~~~----d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~~ 481 (827)
....+ +........ ..++.+..-. +.+...-+...++..-...+.--.++.+|+.-..+.+-++-|.+ +||++
T Consensus 210 ~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDle 289 (365)
T 2xzh_A 210 NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 289 (365)
T ss_dssp CSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred CCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcc
Confidence 11111 111111111 1233333311 11122122333322222334445588999998899999999999 99999
Q ss_pred CCeEE
Q 003356 482 QKKWR 486 (827)
Q Consensus 482 t~~w~ 486 (827)
|+..-
T Consensus 290 Tgt~i 294 (365)
T 2xzh_A 290 TGTCI 294 (365)
T ss_dssp TCCEE
T ss_pred cCcEE
Confidence 99754
No 305
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=79.66 E-value=68 Score=34.11 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=55.8
Q ss_pred CCcEEEEEcCCCCEEE-EEecCCeEEEEEcCCCC--cceEEEEeecCCCCCCCCCCeEEEEECC-CCCEEEEEEcCCcEE
Q 003356 257 GDAVCASIAPEQQILA-VGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLT 332 (827)
Q Consensus 257 ~~~v~va~sp~~~lla-~g~~dg~v~vw~~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~Dg~v~ 332 (827)
..++-++|++....|. +-..++.|+.++++... .....+... .......+++.+ .+++.++-...+.|.
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-------~~~~p~glavD~~~~~lY~~d~~~~~I~ 184 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-------DIQAPDGLAVDWIHSNIYWTDSVLGTVS 184 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-------SCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-------CCCCcccEEEEecCCceEEEECCCCeEE
Confidence 4455599998655444 44556888888876411 112222210 234567889988 455555556678899
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 333 vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+.++.+......+... ......++++|.+
T Consensus 185 ~~~~~g~~~~~l~~~~-~~~P~~iavdp~~ 213 (400)
T 3p5b_L 185 VADTKGVKRKTLFREN-GSKPRAIVVDPVH 213 (400)
T ss_dssp EECTTTCSEEEEEECS-SCCEEEEEEETTT
T ss_pred EEeCCCCceEEEEeCC-CCCcceEEEeccc
Confidence 9998876543333222 3345667777653
No 306
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=79.63 E-value=59 Score=33.36 Aligned_cols=219 Identities=10% Similarity=0.049 Sum_probs=101.8
Q ss_pred CCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe-ecCCCeEEEEecCCcEE
Q 003356 77 PDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDNKHMLLGLSDGSLY 155 (827)
Q Consensus 77 PDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~~d~~~llv~t~dg~i~ 155 (827)
|+..++++.|.+|+++-..+..-.. ..... ..+.. +.+...+.-+..+ +...+.+++.|+.|.++
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~----~~~~~--~g~~~--------~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~ 71 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKL----QGTGG--KGLSS--------FDLNDGDEIVIALCVNTHDYLFMISNEGKLY 71 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCB----CCSSC--CCEEC--------CCCCTTCCEEEEEEEETTCEEEEEETTSEEE
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhc----cccCC--CCcee--------cccCCCCEEEEEEEECCCCEEEEEECCCeEE
Confidence 5777899999999998655431110 00000 00111 1122222223233 33457899999999998
Q ss_pred EEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcC---CcceEEEEEeCCcE
Q 003356 156 SISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL---PMRLLFVLYSNGQL 232 (827)
Q Consensus 156 ~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~~~~~~~s~dG~~ 232 (827)
.+.-..-...... ..+......+++ ..+..|..+..-. ....++.++.+|..
T Consensus 72 ~~~~~~ip~~~r~----~~G~~i~~~l~l---------------------~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~ 126 (312)
T 1suu_A 72 LINAYEIKDSSRA----SKGQNISELINL---------------------GDQEEILTIKNSKDLTDDAYLLLTTASGKI 126 (312)
T ss_dssp EEEGGGSCC-----------CBGGGTSCC---------------------CTTCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred EEEHHHCCCCCcc----CCCcChhhccCC---------------------CCCCEEEEEEEeccCCCCCEEEEEeCCCeE
Confidence 8754311110000 000000111111 1222344443221 23456777888887
Q ss_pred EEEeeccCccccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCC---CcceEEEEeecCCCCCCCCCC
Q 003356 233 MSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES---ASLIRTVSLYDWGYSMDDTGP 309 (827)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~---~~~~~~l~~~~~~~~~~h~~~ 309 (827)
.-+...+....--.....-.+......+.+....+...++..+.+|.+..+.+++- ++..+-...- .......
T Consensus 127 kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i----~L~~~d~ 202 (312)
T 1suu_A 127 ARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM----KLKEGDL 202 (312)
T ss_dssp EEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECC----CCCTTCC
T ss_pred EEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeE----EeCCCCE
Confidence 77655442111001111111222223344444344567888899999988887651 1111111110 1112345
Q ss_pred eEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 310 VSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 310 V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
|.++..-+++..|++.++.|..+..++..
T Consensus 203 vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 203 FVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 66666555566677777778777777643
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=79.49 E-value=20 Score=37.72 Aligned_cols=76 Identities=12% Similarity=0.054 Sum_probs=44.3
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC---CCEEEEEEc----C-
Q 003356 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAVGWK----S- 328 (827)
Q Consensus 257 ~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD---g~~Lasg~~----D- 328 (827)
..+..++|.|+|++++ +..+|.|++++- + +. ..+... +......+....|+++|| +..|.++.. +
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~-G~--~~~~~~--~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~ 101 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLISP-S-GK--KLVASF--DVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG 101 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEECS-S-CE--EEEEEC--CCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEeC-C-Cc--eEeecc--ceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence 4455689999998555 466699988862 3 33 322221 111112346789999998 444444332 3
Q ss_pred ---CcEEEEeccCC
Q 003356 329 ---RGLTVWSVSGC 339 (827)
Q Consensus 329 ---g~v~vWs~~~~ 339 (827)
+.|..|+..+.
T Consensus 102 ~~~~~v~r~~~~~~ 115 (354)
T 3a9g_A 102 HIRNRVIRGRLDGS 115 (354)
T ss_dssp CEEEEEEEEEECSS
T ss_pred CcceEEEEEEECCC
Confidence 45667776554
No 308
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=77.86 E-value=12 Score=36.48 Aligned_cols=102 Identities=12% Similarity=0.050 Sum_probs=55.7
Q ss_pred EEEEEeCCcEEEEeeccCccccc--eeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCC-----cceEEE
Q 003356 223 LFVLYSNGQLMSCSVSKKGLKLA--EFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA-----SLIRTV 295 (827)
Q Consensus 223 ~~~~s~dG~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~-----~~~~~l 295 (827)
+..+..| ++++-...+.....| ...+..+ .+-.....++|+|+|.+-|+ .+|.+.-.+..+.. ..-..+
T Consensus 7 l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~-~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 7 LRGVYQD-KFYQGTYPQNKNDNWLARATLIGK-GGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp EEEEETT-EEEEESCCCSTTCCHHHHSEEEES-SSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEeCC-cEEecCCCCCcccchhhhccccCc-cccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence 3445556 766655555443445 2211111 11123336999999999988 77764443332201 111111
Q ss_pred EeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
-.. +-.+ -.++.|.|+|.+.|+ .||.|.-++..
T Consensus 83 G~~------Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 83 GNG------GWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp ECS------CGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccc------cccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 100 0111 478999999999998 55888877763
No 309
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=77.86 E-value=66 Score=32.96 Aligned_cols=94 Identities=10% Similarity=0.007 Sum_probs=53.8
Q ss_pred cEEEEEcCC-CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE--cCCcEEEEe
Q 003356 259 AVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--KSRGLTVWS 335 (827)
Q Consensus 259 ~v~va~sp~-~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~--~Dg~v~vWs 335 (827)
+.-+++.+. +.+..+-...+.|.+++.+. .....+... ....-..+++.|++..|..+. ..+.|...+
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~~-------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFWQ-------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCC--CcEEEEEeC-------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence 334788874 45555556678999988764 333333210 234568899999655555444 246777777
Q ss_pred ccCCeeEEEeccccccceeeeeecCCC
Q 003356 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
..|... ..+...+...-+.++++|++
T Consensus 152 ~dG~~~-~~~~~~~l~~Pnglavd~~~ 177 (318)
T 3sov_A 152 MDGSSR-FIIINSEIYWPNGLTLDYEE 177 (318)
T ss_dssp TTSCSC-EEEECSSCSCEEEEEEETTT
T ss_pred cCCCCe-EEEEECCCCCccEEEEeccC
Confidence 776432 22221112334567777654
No 310
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=75.50 E-value=76 Score=32.71 Aligned_cols=53 Identities=11% Similarity=0.262 Sum_probs=26.1
Q ss_pred eE-EEEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEEeeCCC-cEEEEEeeC
Q 003356 475 LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSN-TYELLFYPR 528 (827)
Q Consensus 475 ~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~-~~~lrly~~ 528 (827)
.+ +||+.+++|.........+.. .......+.++|.|+.+.... ..++-++..
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~ 340 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY-GVSLPWNNSLLIIGGETAGGKAVTDSVLITV 340 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS-SEEEEETTEEEEEEEECGGGCEEEEEEEEEC
T ss_pred eEEEEecCCCceeeCCCCCCCccc-ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEE
Confidence 35 999999999987543322221 112334566778787654322 234444444
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=74.96 E-value=97 Score=33.46 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEe
Q 003356 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 257 ~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
.-++.+.+|++...+..-+.-|.+.+||+.+ +.++..-+.
T Consensus 259 DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i~~nrI 298 (494)
T 1bpo_A 259 DFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRI 298 (494)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEEEEEC
T ss_pred CceeEEEecccCCEEEEEecCceEEEEeccc-ceeeeeecc
Confidence 3467789999999999999999999999998 776665444
No 312
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=74.36 E-value=1.4e+02 Score=35.01 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=55.7
Q ss_pred CCcEEEEEcCC-CCEEEEEecCCeEEEEEcCCCC---cceEEEEeecCCCCCCCCCCeEEEEECCCCC-EEEEEEcCCcE
Q 003356 257 GDAVCASIAPE-QQILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGL 331 (827)
Q Consensus 257 ~~~v~va~sp~-~~lla~g~~dg~v~vw~~~~~~---~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~-~Lasg~~Dg~v 331 (827)
..++-++|++. +.+..+-..++.|+.++++... .....+.. .......|++.+.+. +.++-...+.|
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~--------~l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--------DIQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS--------SCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec--------CCCCcceeeeeecCCcEEEEecCCCeE
Confidence 44555889885 4455555566788888876411 11222221 234567789988775 44555566889
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCC
Q 003356 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 332 ~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
.+.++.|.... ++..........++++|..
T Consensus 496 ~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 496 SVADTKGVKRK-TLFRENGSKPRAIVVDPVH 525 (791)
T ss_dssp EEEETTSSSEE-EEEECTTCCEEEEEEETTT
T ss_pred EEEeCCCCeEE-EEEeCCCCCcceEEEecCC
Confidence 99998876533 3322223446677777753
No 313
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=73.72 E-value=2 Score=24.85 Aligned_cols=19 Identities=47% Similarity=0.641 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCHHHHHHH
Q 003356 762 HCLLRHLLQRDKIEEALRL 780 (827)
Q Consensus 762 ~~ilr~~l~~~~~~~a~~~ 780 (827)
|++||+||-+++|..|+..
T Consensus 3 ~~LLRyLLDkDdgnaalry 21 (26)
T 2ao6_B 3 NALLRYLLDKDDGNAALRY 21 (26)
T ss_pred cHHHHHHHccccchHHHHH
Confidence 6899999999999999865
No 314
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=72.68 E-value=45 Score=36.30 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=34.3
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCC-CCCCCCCeEEEEECCC
Q 003356 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY-SMDDTGPVSCIAWTPD 318 (827)
Q Consensus 257 ~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~-~~~h~~~V~~l~~spD 318 (827)
..+..++|.|+|+++++-...+.|++++..+ +. ...+....-.. .....+....|+|+||
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~-~~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPES-GS-VKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT-CC-EEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCC-Cc-EeEEecCCccccccCCCCceeEEEECCC
Confidence 3455689999999777654445787766443 33 22222111001 1112456789999995
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=72.35 E-value=83 Score=31.46 Aligned_cols=27 Identities=30% Similarity=0.704 Sum_probs=21.9
Q ss_pred CCCEEEEEeCCc-----eE-EEEcCCCeEEeeC
Q 003356 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFG 489 (827)
Q Consensus 463 dG~~lavag~dg-----~i-iwd~~t~~w~~f~ 489 (827)
+++.++.||.++ .+ +||+.+++|..+.
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence 778888888764 36 9999999999875
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=71.79 E-value=86 Score=31.41 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=20.9
Q ss_pred CCCEEEEEeCC-----ceE-EEEcCCCeEEee
Q 003356 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVF 488 (827)
Q Consensus 463 dG~~lavag~d-----g~i-iwd~~t~~w~~f 488 (827)
+++.++.||.+ ..+ .||+.+++|+..
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 278 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDKWVAN 278 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence 77888888854 456 999999999865
No 317
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=71.63 E-value=94 Score=31.78 Aligned_cols=77 Identities=9% Similarity=0.058 Sum_probs=46.5
Q ss_pred EEEEEcCCCCEEEEE-ecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 260 VCASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 260 v~va~sp~~~lla~g-~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
.-++++|++..|..+ +..+.|..++++. ...+.+... ..+.-..+++. .+.++.+-+..+.|..++..+
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~~-------~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAVVKG-------SLPHPFALTLF-EDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------CCSCEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCC--CceEEEecC-------CCCCceEEEEe-CCEEEEEecCCCeEEEEECCC
Confidence 348999876655555 4567899998864 333333210 22334566664 345566667778888888876
Q ss_pred CeeEEEec
Q 003356 339 CRLMSTIR 346 (827)
Q Consensus 339 ~~l~~tl~ 346 (827)
++....+.
T Consensus 239 G~~~~~i~ 246 (318)
T 3sov_A 239 GEGLREIH 246 (318)
T ss_dssp CCSCEEEE
T ss_pred CCceEEEe
Confidence 65544443
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=68.70 E-value=1.3e+02 Score=32.41 Aligned_cols=202 Identities=15% Similarity=0.181 Sum_probs=102.0
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe-
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR- 340 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~- 340 (827)
+-.||..+.||.=. ..++.+||+++ ...++.... ...|.--+|-.+.. |+--.+ ..|.-|++++..
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~-K~klks~~~---------~e~VvfWkWis~~~-l~lVT~-taVyHWsi~~~s~ 137 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTM---------TDDVTFWKWISLNT-VALVTD-NAVYHWSMEGESQ 137 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTT-TEEEEEEEC---------SSCCCEEEEEETTE-EEEECS-SEEEEEESSSSCC
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHH-hhhhcceec---------CCCceEEEecCCCe-EEEEcC-CeeEEecccCCCC
Confidence 55799999998875 77999999988 555555543 45688888876644 333333 689999998642
Q ss_pred eEEEeccccc---cceeeeeecCCCCCCccceeecc---------eeEEEccCCceEEEEecCCcceEEEEecceeeeec
Q 003356 341 LMSTIRQISL---SSISSPIVKPNQDCKYEPLMSGT---------SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNR 408 (827)
Q Consensus 341 l~~tl~~~~~---~~v~s~~~sp~~~~~~~~l~sg~---------~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~ 408 (827)
....+.-|.. ..+-.-..+++. + -.++.|. .+-.++.+.. .-..++||......+.. .|
T Consensus 138 P~kvFdR~~~L~~~QIInY~~d~~~--k-W~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~-----~g 208 (494)
T 1bpo_A 138 PVKMFDRHSSLAGCQIINYRTDAKQ--K-WLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKM-----EG 208 (494)
T ss_dssp CEEEEECCGGGTTCEEEEEEECTTS--S-EEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEEC-----TT
T ss_pred chhheecchhcccceEEEEEECCCC--C-eEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEec-----CC
Confidence 3333322211 112222233332 1 1222222 2222332211 11223344333332222 11
Q ss_pred ccCCCeeeeEEEEc---CCeEEEEecC----CCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCceE-EEEc
Q 003356 409 GVSGMTYARQVIYG---EDRLLVVQSE----DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (827)
Q Consensus 409 ~~d~~~~~w~~~~~---~~~~~~~~~~----d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg~i-iwd~ 480 (827)
....+ .+..+... ..++.+..-. +.+...-+.++++..-...+.--.++.+|+.-..+.+-++-|.+ +||+
T Consensus 209 ~~~~~-~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDl 287 (494)
T 1bpo_A 209 NAEES-TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDL 287 (494)
T ss_dssp CSSEE-EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred CCCCc-eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEec
Confidence 11110 01111111 1233333211 11122122333322222334444588999998899999999999 9999
Q ss_pred CCCeEE
Q 003356 481 RQKKWR 486 (827)
Q Consensus 481 ~t~~w~ 486 (827)
+|+..-
T Consensus 288 eTgt~i 293 (494)
T 1bpo_A 288 ETGTCI 293 (494)
T ss_dssp TTCCEE
T ss_pred ccceee
Confidence 999743
No 319
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=68.59 E-value=84 Score=34.55 Aligned_cols=69 Identities=7% Similarity=0.089 Sum_probs=41.4
Q ss_pred EEEEE-------cCCCCEEEEEecCC-------eEEEEEcCCCCcce-----EEEEeecCCCCCCCCCCeEEEEECC-CC
Q 003356 260 VCASI-------APEQQILAVGTRRG-------VVELYDLAESASLI-----RTVSLYDWGYSMDDTGPVSCIAWTP-DN 319 (827)
Q Consensus 260 v~va~-------sp~~~lla~g~~dg-------~v~vw~~~~~~~~~-----~~l~~~~~~~~~~h~~~V~~l~~sp-Dg 319 (827)
..++| +++++.|.+....+ .|.+.+....+... +.+.. .. ....++.+| ++
T Consensus 189 ~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~--------~~-~p~giavdp~~g 259 (496)
T 3kya_A 189 RSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA--------YK-QCNGATIHPING 259 (496)
T ss_dssp EEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE--------ES-CCCCEEECTTTC
T ss_pred cEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc--------CC-CceEEEEcCCCC
Confidence 34999 99999666555443 25555433212221 22222 11 234678899 56
Q ss_pred CEEEEEEcCCcEEEEecc
Q 003356 320 SAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 320 ~~Lasg~~Dg~v~vWs~~ 337 (827)
.++++-..++.|..+++.
T Consensus 260 ~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 260 ELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp CEEEEETTTTEEEEECHH
T ss_pred eEEEEECCCCEEEEEecc
Confidence 667777788889999987
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=67.93 E-value=67 Score=33.52 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC
Q 003356 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD 318 (827)
Q Consensus 257 ~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD 318 (827)
..+..++|.|+|+++++-...|.|++++.++ +.. ..+.... .......+....|+++||
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~-g~~-~~v~~~~-~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKT-GRK-TELGEVP-GVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCE-EEEEECT-TCCCBTTBSEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCC-CcE-eeecccC-ceeecCCCCceeeEeccc
Confidence 4455699999999877665589998876543 332 2222110 011123567899999996
No 321
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=66.45 E-value=1.2e+02 Score=30.93 Aligned_cols=114 Identities=9% Similarity=0.047 Sum_probs=53.2
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcce-EEEEeecC
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLI-RTVSLYDW 300 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~-~~l~~~~~ 300 (827)
.++.++.+|..--+...+....--.....-.+..+...+.+....+...|+..+.+|.+.-++..+ -... +.-.+..
T Consensus 111 ~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~-v~~~gr~a~Gv~- 188 (307)
T 1zi0_A 111 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS-VRAMGCNTTGVR- 188 (307)
T ss_dssp EEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGG-SCBCCTTCCCEE-
T ss_pred EEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHH-cCccCCCCCCeE-
Confidence 355666666655544333211100111111112333333333334455677888899887777654 1111 0000000
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 301 ~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
...-.....|.++...+++..|+..++.|..+-.++.
T Consensus 189 ~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 189 GIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp CCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred eEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 0011123456666555555567777777777766653
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.76 E-value=56 Score=39.40 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=33.9
Q ss_pred CCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEe
Q 003356 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (827)
Q Consensus 308 ~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl 345 (827)
..+.+++..+|..++++-+.|+++|+||+.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45788888999999999999999999999999988764
No 323
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=65.42 E-value=1.3e+02 Score=31.11 Aligned_cols=64 Identities=14% Similarity=0.032 Sum_probs=34.9
Q ss_pred CcEEEEEcCC---CCEEEEE-ecC-----CeEEEEEcCCCCcc--eE-EEEeecCCC--CCCCCCCeEEEEECCCCCEEE
Q 003356 258 DAVCASIAPE---QQILAVG-TRR-----GVVELYDLAESASL--IR-TVSLYDWGY--SMDDTGPVSCIAWTPDNSAFA 323 (827)
Q Consensus 258 ~~v~va~sp~---~~lla~g-~~d-----g~v~vw~~~~~~~~--~~-~l~~~~~~~--~~~h~~~V~~l~~spDg~~La 323 (827)
...-++++|+ +..|.+. ..+ +.|..|+.+. ... .+ .+.. ++. ...|.. ..++|.|||.+.+
T Consensus 76 ~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~-~~~~~~~~l~~~--~p~~~~~~h~~--~~l~~~pdG~Lyv 150 (352)
T 2ism_A 76 GLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLG-ERGVLDRVVLDG--IPARPHGLHSG--GRIAFGPDGMLYV 150 (352)
T ss_dssp SEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECS-SCEEEEEEEEEE--ECCCTTCCCCC--CCEEECTTSCEEE
T ss_pred CceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCC-CCcCceEEEEEe--CCCCCCCCcCC--ceEEECCCCCEEE
Confidence 3444999998 4444443 332 5677777664 321 11 1111 221 122433 5899999998766
Q ss_pred EEE
Q 003356 324 VGW 326 (827)
Q Consensus 324 sg~ 326 (827)
+-+
T Consensus 151 ~~G 153 (352)
T 2ism_A 151 TTG 153 (352)
T ss_dssp ECC
T ss_pred EEC
Confidence 644
No 324
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=64.10 E-value=1.3e+02 Score=30.53 Aligned_cols=94 Identities=9% Similarity=-0.031 Sum_probs=52.8
Q ss_pred cEEEEEcCCC-CEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEE-cC-CcEEEEe
Q 003356 259 AVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KS-RGLTVWS 335 (827)
Q Consensus 259 ~v~va~sp~~-~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~-~D-g~v~vWs 335 (827)
+..+++.+.+ .+..+-..++.|.+.+.+. .....+-.. .......+++.|++..|..+. .. +.|...+
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g--~~~~~~~~~-------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRE-------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEEEEEC-------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCC--CceEEEEEC-------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 3347888654 4555556678999988764 333333220 234568999999655554443 33 6787777
Q ss_pred ccCCeeEEEeccccccceeeeeecCCC
Q 003356 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+.|... ..+.......-+.++++|++
T Consensus 150 ~dG~~~-~~~~~~~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 150 LNGVDI-YSLVTENIQWPNGITLDLLS 175 (316)
T ss_dssp TTSCCE-EEEECSSCSCEEEEEEETTT
T ss_pred CCCCCe-EEEEECCCCCceEEEEeccC
Confidence 766432 22221112334556666554
No 325
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=63.91 E-value=56 Score=33.30 Aligned_cols=65 Identities=6% Similarity=-0.059 Sum_probs=33.3
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc--CCcEEEEeccC
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK--SRGLTVWSVSG 338 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~--Dg~v~vWs~~~ 338 (827)
..+.|++++|+-...++.-+|+.+...+.....+.. ..+ -.|+|+|..|.-+.. .+.|..-++.|
T Consensus 189 ~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~----------~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 189 KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE----------ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC----------SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC----------CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 446688888887655432344444432333333321 223 347888887765432 23344444444
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=63.41 E-value=1.3e+02 Score=31.07 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=16.3
Q ss_pred cceeecc---eeEEEccCCceEEEEecC
Q 003356 367 EPLMSGT---SMMQWDEYGYRLYAIEEG 391 (827)
Q Consensus 367 ~~l~sg~---~i~~W~~~~~~l~~~~~~ 391 (827)
+.++.|. .-+.|++.++++|..-.+
T Consensus 190 ~i~a~G~rnp~gl~~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 190 EIWSYGIRNPQGMAMNPWSNALWLNEHG 217 (353)
T ss_dssp TEEEECCSEEEEEEEETTTTEEEEEEEC
T ss_pred cEEEEcCcCccceEEECCCCCEEEEecC
Confidence 4455554 567788877888877544
No 327
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=62.64 E-value=22 Score=41.36 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=39.5
Q ss_pred EEEcCC-CCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEE-EEEEcC-CcEEEEeccC
Q 003356 262 ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKS-RGLTVWSVSG 338 (827)
Q Consensus 262 va~sp~-~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~L-asg~~D-g~v~vWs~~~ 338 (827)
+++.+. +.+.++-..++.|.+++.+. .....+... .......+++.|++..| ++-+.. +.|.+.++.+
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg--~~~~~l~~~-------~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG 528 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRE-------QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 528 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSS--CCEEEECCC-------SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCC--CceEEEEeC-------CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC
Confidence 788754 45555545667898888764 333333210 12334678999965544 443333 6777777765
Q ss_pred C
Q 003356 339 C 339 (827)
Q Consensus 339 ~ 339 (827)
.
T Consensus 529 ~ 529 (699)
T 1n7d_A 529 V 529 (699)
T ss_dssp C
T ss_pred C
Confidence 4
No 328
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=59.06 E-value=1.5e+02 Score=29.63 Aligned_cols=220 Identities=11% Similarity=-0.005 Sum_probs=108.6
Q ss_pred ceEEEEEecceEEEEEccCeEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 003356 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (827)
Q Consensus 22 ~~vv~fspdg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~~v~~~~~ 101 (827)
..|+.++....+.+++++++|..|-.+ ...+++ ... .....++.++-..+ ..+|+ + ||.|..|--.....
T Consensus 24 ~~i~~ia~G~~h~~~l~~G~v~~wG~n-~~Gqlg---~p~---~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALKGGKVLGWGAN-LNGQLT---MPA---ATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SSCCEEEECSSEEEEEETTEEEEEECC-SSSTTS---CCG---GGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTST
T ss_pred CCCcEEEeCCCeEEEEECCEEEEEeCC-CCCCCC---CCc---cCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCC
Confidence 456677777766666678899999765 222222 111 11234556655432 23344 5 88887776421110
Q ss_pred eeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccce
Q 003356 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (827)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~ 181 (827)
. +.+ .. + ...|..+++.....++-+ +|.++.|-.. ...+...
T Consensus 94 ---l------g~P---------~~--~---~~~v~~ia~G~~hs~al~-~G~v~~wG~n--~~gqlg~------------ 135 (282)
T 3qhy_B 94 ---T------TVP---------AE--A---RSGVDAIAAGAWASYALK-DGKVIAWGDD--SDGQTTV------------ 135 (282)
T ss_dssp ---T------CCC---------GG--G---SSSEEEEEEETTEEEEEE-TTEEEEEECC--TTSTTSC------------
T ss_pred ---C------CCC---------cc--c---CCCeEEEECcCCEEEEEe-CCeEEEecCC--CCCcCCC------------
Confidence 0 000 00 1 124666666677666667 9988664332 2221100
Q ss_pred ecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCc-cccceeeccceecCCCCcE
Q 003356 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG-LKLAEFIKIDKELGSGDAV 260 (827)
Q Consensus 182 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v 260 (827)
| ......|..+.-. ....++++ ||+++.++.+... +-+ +.. .....+
T Consensus 136 -~---------------------~~~~~~i~~i~~G--~~~~~~l~-~G~v~~wG~n~~gqlg~-----p~~--~~~~v~ 183 (282)
T 3qhy_B 136 -P---------------------AEAQSGVTALDGG--VYTALAVK-NGGVIAWGDNYFGQTTV-----PAE--AQSGVD 183 (282)
T ss_dssp -C---------------------GGGGSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSC-----CGG--GGSSEE
T ss_pred -C---------------------ccCCCCeEEEEcc--cCEEEEEE-CCEEEEecCCCCCCCCC-----cee--cCCCeE
Confidence 0 0011235555422 23445566 8999998876432 111 111 012233
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 003356 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (827)
Q Consensus 261 ~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~ 336 (827)
.++-... ..+|. .||.|..|-....+++-.. ......|..++-..+-. +|.. ||.+..|=-
T Consensus 184 ~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~p---------~~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~ 244 (282)
T 3qhy_B 184 DVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVP---------TEALSGVSAIASGEWYS-LALK--NGKVIAWGS 244 (282)
T ss_dssp EEEECSS-EEEEE--ETTEEEEEECCTTSTTCCC---------GGGGSSCCEEEECSSCE-EEEE--TTEEEEEST
T ss_pred EEEecCC-EEEEE--ECCeEEEEECCCCCCCCCC---------cccCCCceEEEcCCCEE-EEEE--CCEEEEecC
Confidence 3554333 23444 5999999987764433110 00123467776554433 3333 788888854
No 329
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=58.52 E-value=1.8e+02 Score=30.33 Aligned_cols=82 Identities=7% Similarity=0.081 Sum_probs=49.6
Q ss_pred cEE-EEEcCCCCEEEEEecCCeEEEEEcCCCC----cceEEEEeecCCCCCCCCCCeEEEEE--CCCCC-EEEEEE-cCC
Q 003356 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAW--TPDNS-AFAVGW-KSR 329 (827)
Q Consensus 259 ~v~-va~sp~~~lla~g~~dg~v~vw~~~~~~----~~~~~l~~~~~~~~~~h~~~V~~l~~--spDg~-~Lasg~-~Dg 329 (827)
.+. +++.+....|.++-+|.-|..|+.+... ..+..+.. + .-...+..|+. .+||+ +|++++ .++
T Consensus 181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~---g---~l~aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 181 QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG---R---HLTRDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS---S---SBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC---C---ccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence 344 7888888899999999666666654322 12222111 0 01235777777 66666 454444 678
Q ss_pred cEEEEecc-CCeeEEEec
Q 003356 330 GLTVWSVS-GCRLMSTIR 346 (827)
Q Consensus 330 ~v~vWs~~-~~~l~~tl~ 346 (827)
+..||+.. ..+.+.++.
T Consensus 255 s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 255 SYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEESSTTCCEEEEEE
T ss_pred EEEEEECCCCCcEEEEEE
Confidence 99999996 455555543
No 330
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=57.36 E-value=1.7e+02 Score=29.90 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=37.2
Q ss_pred CCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEE-eecCCCeEEEEecCCcEE
Q 003356 77 PDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN-IVSDNKHMLLGLSDGSLY 155 (827)
Q Consensus 77 PDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~-~~~d~~~llv~t~dg~i~ 155 (827)
|+..++++.|.+|+++--.+..-.. .... .+.++..+.-+.. .+...+.+++.|+.|.++
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~----~~~~---------------~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~ 63 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAA----SNGQ---------------DFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYL 63 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHH----TTTC---------------CCCCCTTCCEEEEEEEETTSEEEEEETTSEEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhh----cCcc---------------ccccCCCCEEEEEEEECCCCEEEEEECCCEEE
Confidence 6778899999999998554421100 0000 0111222222222 244568899999999988
Q ss_pred EEecC
Q 003356 156 SISWK 160 (827)
Q Consensus 156 ~~~w~ 160 (827)
.+...
T Consensus 64 ~~~~~ 68 (323)
T 1wp5_A 64 YCPVH 68 (323)
T ss_dssp EEEGG
T ss_pred EEEHH
Confidence 77543
No 331
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.99 E-value=34 Score=42.30 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=32.7
Q ss_pred CCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEe
Q 003356 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (827)
Q Consensus 308 ~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl 345 (827)
..+.+++..+|..++++-+.|+++|+||+.+++++.+.
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 35566777889999999999999999999999988774
No 332
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=52.12 E-value=2.3e+02 Score=29.68 Aligned_cols=70 Identities=10% Similarity=0.028 Sum_probs=37.3
Q ss_pred cCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEe-ecCCCeEEEEecCCcE
Q 003356 76 SPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDNKHMLLGLSDGSL 154 (827)
Q Consensus 76 SPDg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~~d~~~llv~t~dg~i 154 (827)
=|+-.++++.|.+|||+=-.+..-. ....... .+..+ .++..+.-+..+ +...+.+++.|+.|.+
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~----~~~r~g~--g~~~~--------~lke~D~l~~~~~~~t~d~ll~fT~~G~~ 69 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYR----AQRRGGR--GRSAA--------STKEEDFIDQLWLVNTHDTLLTFTSSGKV 69 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHH----HTCCCCC--CSEEE--------ECSCCCCEEEEEEECTTCEEEEEETTSEE
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhh----hhccCCC--Cceec--------ccCCCCEEEEEEEecCCCEEEEEeCCCeE
Confidence 3778899999999999854432110 0000000 01111 112222222222 3345779999999998
Q ss_pred EEEec
Q 003356 155 YSISW 159 (827)
Q Consensus 155 ~~~~w 159 (827)
+.+.-
T Consensus 70 ~~~~~ 74 (370)
T 3l6v_A 70 FWLPV 74 (370)
T ss_dssp EEEEG
T ss_pred EEEEH
Confidence 87753
No 333
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=50.79 E-value=13 Score=41.44 Aligned_cols=104 Identities=10% Similarity=-0.003 Sum_probs=61.3
Q ss_pred EEEEeCCcEEEEeec-cCccccceeeccce-----------e-----cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcC
Q 003356 224 FVLYSNGQLMSCSVS-KKGLKLAEFIKIDK-----------E-----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (827)
Q Consensus 224 ~~~s~dG~~~~~~~~-~~~~~~~~~~~~~~-----------~-----~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~ 286 (827)
+-++|||+.++++.. +.++.+.+...... . .--..+...+|.++|....+---|.+|.-|+++
T Consensus 328 v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~ 407 (638)
T 3sbq_A 328 CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNME 407 (638)
T ss_dssp EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEecc
Confidence 668999998887653 33444444332110 0 112456679999999666677789999999997
Q ss_pred CC-----C-cceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc
Q 003356 287 ES-----A-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (827)
Q Consensus 287 ~~-----~-~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~ 327 (827)
.. + +.-..+...+..|.++|......=.-.|||++|++...
T Consensus 408 ~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 408 EAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp HHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred HHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 51 1 11123333333444445322122234689999998765
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=49.22 E-value=2.1e+02 Score=28.46 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=20.9
Q ss_pred CCCEEEEEeCC-----ceE-EEEcCCCeEEeeC
Q 003356 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFG 489 (827)
Q Consensus 463 dG~~lavag~d-----g~i-iwd~~t~~w~~f~ 489 (827)
+++.++.||.+ ..+ +||+.+++|+...
T Consensus 262 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 294 (308)
T 1zgk_A 262 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT 294 (308)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred CCEEEEEcCcCCCcccceEEEEcCCCCEEeecC
Confidence 67888888754 346 9999999998763
No 335
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=47.95 E-value=2.4e+02 Score=28.66 Aligned_cols=116 Identities=10% Similarity=-0.036 Sum_probs=61.2
Q ss_pred CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcc
Q 003356 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (827)
Q Consensus 142 ~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (827)
.+.+++.|.+|.+++.....-...... .+.. +.+. .+..+..+.......
T Consensus 114 ~~~ll~~T~~G~~kr~~l~~~~~~r~~---------G~~~--------------------i~L~-~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 114 DAYLLLTTASGKIARFESTDFKAVKSR---------GVIV--------------------IKLN-DKDFVTSAEIVFKDE 163 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGGCC-------------CEEC--------------------BCCC-TTCCEEEEEEECTTC
T ss_pred CCEEEEEeCCCeEEEEEHHHhhccCCC---------cEEE--------------------EecC-CCCEEEEEEEeCCCC
Confidence 567999999999998765432111100 0000 1111 234455554444445
Q ss_pred eEEEEEeCCcEEEEeeccCccc--cceeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCC
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLK--LAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~ 287 (827)
.++.++.+|+.+.+...+-... .-.....-.+......+.+..-.++..+++.+.+|..+...+++
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 6778888888877665542111 00111111112222333344434566788889999998888765
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.94 E-value=2.3e+02 Score=34.02 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEe
Q 003356 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 259 ~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
.++++..++..++.+-|.|+++|+|++.+ ++++.+...
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t-~~~v~t~dL 275 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLST-NQCVETIEL 275 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTT-TEEEEEEEC
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCC-CCeEeeecc
Confidence 35577778889999999999999999998 777776543
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=45.68 E-value=1.5e+02 Score=30.70 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=34.7
Q ss_pred CEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEE---ECCCCCEEEEE-EcCCcEEEEeccCCeeE
Q 003356 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA---WTPDNSAFAVG-WKSRGLTVWSVSGCRLM 342 (827)
Q Consensus 269 ~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~---~spDg~~Lasg-~~Dg~v~vWs~~~~~l~ 342 (827)
.++.+++.||.|.-.|..+ ++..-+++... ..++.... ...+|..++.. ..||.+..++..+|...
T Consensus 11 ~~V~v~t~dG~l~Ald~~t-G~~~W~~~~~~-------~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN-GHIIWSIEPEN-------FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEEEEEETTSCEEEEETTT-TEEEEEECGGG-------SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEecCCc-------cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence 4567777788777777766 55444444310 01111100 00133444443 57788888887776443
No 338
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.24 E-value=1.2e+02 Score=37.32 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=30.6
Q ss_pred cEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEe
Q 003356 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 259 ~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
+++++..++..++.+-|.|+++|+|++.+ ++++.+...
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t-~~~v~t~DL 277 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLST-NQCVETIEL 277 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTT-TEEEEEEEC
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCC-CCeEEeech
Confidence 34456667889999999999999999998 777776554
No 339
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=44.05 E-value=9.8 Score=21.10 Aligned_cols=11 Identities=64% Similarity=0.921 Sum_probs=8.8
Q ss_pred HHHHHHHHHcC
Q 003356 762 HCLLRHLLQRD 772 (827)
Q Consensus 762 ~~ilr~~l~~~ 772 (827)
|++||+||-++
T Consensus 6 hqllrylldkd 16 (21)
T 3dct_B 6 HQLLRYLLDKD 16 (26)
T ss_pred HHHHHHHHccc
Confidence 89999999443
No 340
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=40.14 E-value=3.2e+02 Score=27.93 Aligned_cols=116 Identities=14% Similarity=0.069 Sum_probs=62.8
Q ss_pred CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcc
Q 003356 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (827)
Q Consensus 142 ~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (827)
...+++.|.+|.+++...+.-...... .+. .+.+. .+..+..+.......
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~---------G~~--------------------~i~lk-e~D~lv~~~~~~~~d 158 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSG---------GIV--------------------AVNLR-DNDELVGAVLCSAGD 158 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSS---------CEE--------------------SCBCC-TTCCEEEEEEECTTC
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccC---------ceE--------------------EEEEC-CCCEEEEEEEecCCC
Confidence 568999999999999876532211100 000 01111 233344444444556
Q ss_pred eEEEEEeCCcEEEEeeccCcccc--c--eeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCC
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKL--A--EFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~--~--~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~ 287 (827)
.+++++.+|+++.....+..+.. + .....-.+......+.+..-++...+...+..|.++.-.+.+
T Consensus 159 ~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 159 DLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 77889999998876655212221 1 111111112222333444444566888899999998877655
No 341
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=38.11 E-value=3.3e+02 Score=27.42 Aligned_cols=67 Identities=6% Similarity=-0.021 Sum_probs=41.9
Q ss_pred EEEcCCCCEEEEEe--cCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc-CCcEEEEeccC
Q 003356 262 ASIAPEQQILAVGT--RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSG 338 (827)
Q Consensus 262 va~sp~~~lla~g~--~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~-Dg~v~vWs~~~ 338 (827)
.+|+++++.|+-.. .++.-.||.++..+.....+.. +.. .+|+|+|+.|.-.+. ...|.+-++.+
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~--------~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN--------HYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEES--------SCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeC--------CCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 36788999998776 4555556666543444444543 222 456788887775544 46677777766
Q ss_pred Ce
Q 003356 339 CR 340 (827)
Q Consensus 339 ~~ 340 (827)
+.
T Consensus 177 ~~ 178 (302)
T 3s25_A 177 QS 178 (302)
T ss_dssp TE
T ss_pred CC
Confidence 54
No 342
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=38.06 E-value=3.7e+02 Score=28.01 Aligned_cols=76 Identities=11% Similarity=-0.009 Sum_probs=40.4
Q ss_pred cEEEEEEcCCcceEEEEEeCCcEEEEeeccC-cccc---ceeecccee--cCCCCcEEEEEcCCCCEEEEEecCCeEEEE
Q 003356 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKK-GLKL---AEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (827)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~-~~~~---~~~~~~~~~--~~h~~~v~va~sp~~~lla~g~~dg~v~vw 283 (827)
.|.++.- .....++++.||+++.++.+.. .+-. -+...+... ......+.++........+.-..||+|..|
T Consensus 160 ~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~w 237 (389)
T 3kci_A 160 EVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSW 237 (389)
T ss_dssp CEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEE
T ss_pred eEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEE
Confidence 4655542 3356788899999999987542 1100 011111111 111223335543323445555789999999
Q ss_pred EcCC
Q 003356 284 DLAE 287 (827)
Q Consensus 284 ~~~~ 287 (827)
-...
T Consensus 238 G~n~ 241 (389)
T 3kci_A 238 GDGD 241 (389)
T ss_dssp ECCG
T ss_pred eCCC
Confidence 7654
No 343
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=37.43 E-value=4.9e+02 Score=29.25 Aligned_cols=94 Identities=11% Similarity=0.085 Sum_probs=53.4
Q ss_pred cEEEEEcCCCC-EEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCC-CCEEEEEEc-CCcEEEEe
Q 003356 259 AVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWK-SRGLTVWS 335 (827)
Q Consensus 259 ~v~va~sp~~~-lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spD-g~~Lasg~~-Dg~v~vWs 335 (827)
+--+|+.+.++ +..+-..++.|.+.+.+. ...+.+... .-..-..|++.|. |.+..+-+. .+.|...+
T Consensus 86 P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG--~~~~~l~~~-------~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~ 156 (619)
T 3s94_A 86 PDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFWQ-------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 156 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------SCSCCCCEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred cCeEEEEecCCEEEEEeCCCCEEEEEECCC--CCEEEEEeC-------CCCCCceEEEecCCCeEEEeccCCCCEEEEEE
Confidence 33489998555 555555678999988864 333333321 2334578999986 444455433 34566666
Q ss_pred ccCCeeEEEeccccccceeeeeecCCC
Q 003356 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (827)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (827)
+.|.......... ...-+.+++++++
T Consensus 157 ~dG~~~~~l~~~~-~~~P~Glald~~~ 182 (619)
T 3s94_A 157 MDGSSRFIIINSE-IYWPNGLTLDYEE 182 (619)
T ss_dssp TTSCSCEEEECSS-CSSEEEEEEETTT
T ss_pred CCCCceEEEEeCC-CCCCcEEEEEccC
Confidence 6654332222221 2345667777654
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=37.26 E-value=3.6e+02 Score=33.88 Aligned_cols=64 Identities=19% Similarity=0.438 Sum_probs=45.4
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 003356 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (827)
Q Consensus 262 va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~ 338 (827)
+-.||..+.||.-. ..++.|||+.+ ...++.... +.+|.--+|-.+...-.++ . ..|.-|++.+
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~-k~klks~~~---------~e~VvfWkWis~~~l~lVT-~-~aVyHW~~~~ 134 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTM---------TDDVTFWKWISLNTVALVT-D-NAVYHWSMEG 134 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHH-hhhhccccc---------CCCceEEEecCCCeeEEEc-C-CeEEEeccCC
Confidence 45789999888865 77999999987 444444433 4568888897665433332 2 5899999976
No 345
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=35.68 E-value=3.4e+02 Score=26.94 Aligned_cols=229 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred EEEEEecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEc----CCc-------EEEEeccC
Q 003356 270 ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK----SRG-------LTVWSVSG 338 (827)
Q Consensus 270 lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~----Dg~-------v~vWs~~~ 338 (827)
++..|+ ..+..||..+..=....+.. ........+...+++.++.|+. ++. +.++|..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~--------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~ 76 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSS--------QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD 76 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCC--------CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCC--------CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCC
Q ss_pred CeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEccCCceEEEEecCCcceEEEEec--ceeeeecccCCCeee
Q 003356 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYA 416 (827)
Q Consensus 339 ~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~ 416 (827)
++-...-.......-.+.+...+. -.++ ++.-..........+..+++ .+.-..........-
T Consensus 77 ~~W~~~~~~p~~r~~~~~~~~~~~----lyv~-----------GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 141 (315)
T 4asc_A 77 SEWLGMPPLPSPRCLFGLGEALNS----IYVV-----------GGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG 141 (315)
T ss_dssp TEEEECCCBSSCEESCEEEEETTE----EEEE-----------CCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CeEEECCCCCcchhceeEEEECCE----EEEE-----------eCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Q ss_pred eEEEEcCCeEEEEecC-------------CCCcceEEEeeeceeeccCCCcEEEEEEcCCCCEEEEEeCCc-----eE-E
Q 003356 417 RQVIYGEDRLLVVQSE-------------DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG-----LI-L 477 (827)
Q Consensus 417 w~~~~~~~~~~~~~~~-------------d~~~~~w~~~~~p~~~~~~~~~I~~va~SpdG~~lavag~dg-----~i-i 477 (827)
.....-+++++++.|. |.....|..+.-...-......+.. +++.++.||.++ .+ .
T Consensus 142 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 142 HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-----DGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-----TTEEEEEEEECSSSEEEEEEE
T ss_pred eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-----CCEEEEEeccCCCCccceEEE
Q ss_pred EEcCCCeEEeeCCccceEEEEEEEEEEeCCEEEEEEEeeC---------CCcEEEEEeeCC
Q 003356 478 YDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDS---------SNTYELLFYPRY 529 (827)
Q Consensus 478 wd~~t~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~---------~~~~~lrly~~~ 529 (827)
||+.+++|.........+........ .+.+++.++.... ....++.+|...
T Consensus 217 yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~ 276 (315)
T 4asc_A 217 YSITDNKWAPFEAFPQERSSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEE 276 (315)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT
T ss_pred EECCCCeEEECCCCCCcccceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCC
No 346
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=34.48 E-value=4.7e+02 Score=28.18 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=34.2
Q ss_pred EEEEecce--EEEEEccCeEEEeecCCce--eEEEEEEeChHhhh------hcCcccEEEEcCC---ccEEEEE
Q 003356 25 IYFKVNNG--LLLIASPCHIELWSSSQHK--VRLGKYKRDSESVQ------REGENLQAVWSPD---TKLIAVV 85 (827)
Q Consensus 25 v~fspdg~--lla~~~~~~v~IW~~~~~~--~~l~~~~r~~~s~~------~~G~~~~v~wSPD---g~~lav~ 85 (827)
++|.|||. +|++-..++|++++.+... ..+... ...+. ..+....|+|+|| ...|++.
T Consensus 19 ~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~---~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 19 ALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDI---HKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp EECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEEC---TTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred EEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCC---cceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 78999985 8888788889888653111 112211 11111 1345678999998 3344443
No 347
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=34.44 E-value=3.3e+02 Score=29.38 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCCC-EEEEEecCCeEEEEEcCCCCcceEEEEeecCCCC----CCCCCCeEEEEECCC
Q 003356 257 GDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS----MDDTGPVSCIAWTPD 318 (827)
Q Consensus 257 ~~~v~va~sp~~~-lla~g~~dg~v~vw~~~~~~~~~~~l~~~~~~~~----~~h~~~V~~l~~spD 318 (827)
..+..++|.|+|+ .|.++...|.|++++.+. ......+......+. ....+....|+|+||
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g-~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEG-EIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTS-CBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCC-CeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4556689999996 455567899999986432 111111111000011 112467889999997
No 348
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=33.76 E-value=4.3e+02 Score=27.53 Aligned_cols=19 Identities=11% Similarity=0.335 Sum_probs=16.0
Q ss_pred CCeEEEEecCCcEEEEecC
Q 003356 142 NKHMLLGLSDGSLYSISWK 160 (827)
Q Consensus 142 ~~~llv~t~dg~i~~~~w~ 160 (827)
..+++++|.+|.+++....
T Consensus 113 ~~~ll~~T~~G~vKrt~l~ 131 (370)
T 3l6v_A 113 NRYVFMATRNGTVKKTPLS 131 (370)
T ss_dssp TCEEEEEETTSEEEEEEGG
T ss_pred CcEEEEEeCCCeEEEeEHH
Confidence 4589999999999997665
No 349
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=32.43 E-value=4.4e+02 Score=27.25 Aligned_cols=86 Identities=19% Similarity=0.142 Sum_probs=43.7
Q ss_pred cCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECC--CCC-EEEEEE-c--CCcEEEEeccC--Ce--eEEEe
Q 003356 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNS-AFAVGW-K--SRGLTVWSVSG--CR--LMSTI 345 (827)
Q Consensus 276 ~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--Dg~-~Lasg~-~--Dg~v~vWs~~~--~~--l~~tl 345 (827)
.+|.|.++|.++.......+....... .........+.+.+ ||+ +|.+.. . +.++.+|++.. +. .+.++
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~-~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTL-DISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSC-CGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCC-CcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 688999999874222233333211000 00223456666655 564 454442 2 46788887743 32 34445
Q ss_pred ccccccceeeeeecCCC
Q 003356 346 RQISLSSISSPIVKPNQ 362 (827)
Q Consensus 346 ~~~~~~~v~s~~~sp~~ 362 (827)
.+......+.+.+.+++
T Consensus 160 ~g~~~~~pND~~v~~~G 176 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPE 176 (355)
T ss_dssp CCTTCSSEEEEEEEETT
T ss_pred ccCCCCCCceEEEeCCC
Confidence 44333456677777766
No 350
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=31.95 E-value=56 Score=36.88 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=34.0
Q ss_pred EEEEecceEEEEEccC------------eEEEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEE
Q 003356 25 IYFKVNNGLLLIASPC------------HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVV 85 (827)
Q Consensus 25 v~fspdg~lla~~~~~------------~v~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~ 85 (827)
|+|+|+|++++ ++|+ .-.+|-.......+..+.+.+. -.+.+.++|+||+++|.+.
T Consensus 481 L~fd~~G~LwI-~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~----gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 481 LGFDKAGRLWI-LTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI----GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTCCEEE-EECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT----TCEEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEE-EecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC----CccCcCeeECCCCCEEEEE
Confidence 78999999665 4432 1245544322233444444332 2567889999999887765
No 351
>1m2z_B Nuclear receptor coactivator 2; glucocorticoid receptor, dexamethasone, TIF2, dimer interface, hormone binding pocket, charge clamp; HET: BOG DEX; 2.50A {Homo sapiens} PDB: 3gn8_C*
Probab=31.18 E-value=10 Score=22.38 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=11.0
Q ss_pred HHHHHHHHHHcCCHHHH
Q 003356 761 LHCLLRHLLQRDKIEEA 777 (827)
Q Consensus 761 L~~ilr~~l~~~~~~~a 777 (827)
=|++||+||-++...+|
T Consensus 8 ~~~LLryLLdkdd~~~~ 24 (26)
T 1m2z_B 8 ENALLRYLLDKDDTXXX 24 (26)
T ss_dssp SCHHHHHHTSCCCC---
T ss_pred hHHHHHHHHccCccccc
Confidence 37899999977665444
No 352
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=30.95 E-value=6.1e+02 Score=28.43 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=44.8
Q ss_pred cEEEEEcCCCCEEEEE-ecCCeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 003356 259 AVCASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (827)
Q Consensus 259 ~v~va~sp~~~lla~g-~~dg~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v~vWs~~ 337 (827)
+.-++++++++.|..+ ...+.|..++++. ...+.+.... ..|. ..|++..| ....+-+..+.|...|..
T Consensus 173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG--~~~~~~~~~~----~~~P---~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAVVKGS----LPHP---FALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTCCEEEESSSC--CEEC-------------C---CCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred CcEEEEEccCCEEEEEeCCCCeEEEecCCC--CccEEEEeCC----CCCc---eEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 3448999876555554 4456788887754 2222221100 0133 35667666 566666777889999988
Q ss_pred CCeeEEEec
Q 003356 338 GCRLMSTIR 346 (827)
Q Consensus 338 ~~~l~~tl~ 346 (827)
+++....+.
T Consensus 243 tg~~~~~i~ 251 (619)
T 3s94_A 243 TGEGLREIH 251 (619)
T ss_dssp SCCCCEECC
T ss_pred CCcccEEEe
Confidence 776555543
No 353
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=30.54 E-value=4.7e+02 Score=27.05 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=48.8
Q ss_pred EEEEEcCC-CC-EEEEEecCCeEEEEEcCCC------CcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 260 VCASIAPE-QQ-ILAVGTRRGVVELYDLAES------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 260 v~va~sp~-~~-lla~g~~dg~v~vw~~~~~------~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
+|+--+|+ ++ ++.+...+|.+..|++... .+.++++.. .+.+-.|...+....|.++-+|.+|
T Consensus 133 lcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---------gsq~EgcvvDd~~g~Lyv~eEd~GI 203 (355)
T 3amr_A 133 FTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---------NSQTEGMAADDEYGRLYIAEEDEAI 203 (355)
T ss_dssp EEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---------SSCEEEEEEETTTTEEEEEETTTEE
T ss_pred EEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---------CCCcceEEEcCCCCeEEEecccceE
Confidence 44433774 44 5777888899999998531 234556654 4578899999999999999999776
Q ss_pred EEEec
Q 003356 332 TVWSV 336 (827)
Q Consensus 332 ~vWs~ 336 (827)
..++.
T Consensus 204 w~~da 208 (355)
T 3amr_A 204 WKFSA 208 (355)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 55564
No 354
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=29.42 E-value=5.1e+02 Score=27.06 Aligned_cols=267 Identities=13% Similarity=0.064 Sum_probs=120.3
Q ss_pred ceEEEEEecceEEEEE-ccC-eEEEeecCCceeEE--------EEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEE
Q 003356 22 QQIIYFKVNNGLLLIA-SPC-HIELWSSSQHKVRL--------GKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYL 91 (827)
Q Consensus 22 ~~vv~fspdg~lla~~-~~~-~v~IW~~~~~~~~l--------~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l 91 (827)
..|+..+.-+.+.+++ .++ .|..|-.+ ...++ ....+. ..+. .-.++. .+-.....++.+.+|.|
T Consensus 68 ~~i~~va~G~~ht~al~~~gg~v~~wG~n-~~GqLG~g~~~~~~~p~~v-~~l~-~~~i~~--ia~G~~h~~alt~~G~v 142 (406)
T 4d9s_A 68 HQIVSVTCGADHTVAYSQSGMEVYSWGWG-DFGRLGHGNSSDLFTPLPI-KALH-GIRIKQ--IACGDSHCLAVTMEGEV 142 (406)
T ss_dssp SCEEEEEECSSEEEEEETTTTEEEEEECC-GGGTTCSSSCCCEEEEEEC-GGGT-TCCEEE--EEECSSEEEEEETTSCE
T ss_pred CCEEEEEeCcceEEEEECCCCEEEEEcCC-CCcCCCCCCCCccccceEe-cccC-CCCEEE--EEEChhheEEEcCCCcE
Confidence 4677777777666555 444 89999543 11111 111111 1111 012333 34455667777888988
Q ss_pred EEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecc
Q 003356 92 HIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVH 171 (827)
Q Consensus 92 ~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~ 171 (827)
..|--.... + .+........ .+.....+ ....|..+++.....++-+.+|.++.|-+... .+.-
T Consensus 143 ~~wG~n~~G--q-LG~g~~~~~~------~p~~v~~~--~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~--GqlG--- 206 (406)
T 4d9s_A 143 QSWGRNQNG--Q-LGLGDTEDSL------VPQKIQAF--EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRY--GNLG--- 206 (406)
T ss_dssp EEEECCTTS--T-TCSSSCCCEE------EEEECGGG--TTCCEEEEEECSSEEEEEETTSCEEEEECCTT--STTC---
T ss_pred EEeCCCCCc--c-CCCCCCCCcc------cceEeccc--CCCcEEEEecCCCeEEEEeCCCCEEEeeCCCC--CCCC---
Confidence 888632111 1 1100000000 11111111 12357777778888888899999877544321 1110
Q ss_pred cCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCc-ccc---cee
Q 003356 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG-LKL---AEF 247 (827)
Q Consensus 172 ~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~-~~~---~~~ 247 (827)
.........|.. . .......|..+. ......++++.||+++.++.+... +-. -+.
T Consensus 207 --~g~~~~~~~p~~----------------v-~~~~~~~i~~va--~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~ 265 (406)
T 4d9s_A 207 --LGDRTDRLVPER----------------V-TSTGGEKMSMVA--CGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH 265 (406)
T ss_dssp --SSSSCCEEEEEE----------------C-CCSTTCCEEEEE--ECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCE
T ss_pred --CCCCCCcCccEE----------------e-cccCCceEEEEE--ECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCc
Confidence 000000111100 0 011123455544 233566888999999998875421 111 011
Q ss_pred eccceec--CCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcc-----eEEEEeecCCCCCCCCCCeEEEEECCCCC
Q 003356 248 IKIDKEL--GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASL-----IRTVSLYDWGYSMDDTGPVSCIAWTPDNS 320 (827)
Q Consensus 248 ~~~~~~~--~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~-----~~~l~~~~~~~~~~h~~~V~~l~~spDg~ 320 (827)
..+.... .....+.++- .....+.-..||.|..|-....+++ ............ ....|..++--. .
T Consensus 266 ~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~va~G~--~ 339 (406)
T 4d9s_A 266 LIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP--DDQKVVQVSCGW--R 339 (406)
T ss_dssp EEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG--GGCCEEEEEECS--S
T ss_pred cccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc--CCCcEEEEEeCC--C
Confidence 1111111 1111222332 3334444568899999986653321 000000000000 123466665443 3
Q ss_pred EEEEEEcCCcEEEEec
Q 003356 321 AFAVGWKSRGLTVWSV 336 (827)
Q Consensus 321 ~Lasg~~Dg~v~vWs~ 336 (827)
..++-.+||.|..|=-
T Consensus 340 hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 340 HTLAVTERNNVFAWGR 355 (406)
T ss_dssp EEEEEETTSCEEEEEC
T ss_pred eEEEEeCCCCEEEecC
Confidence 4444457788888854
No 355
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=29.31 E-value=61 Score=33.70 Aligned_cols=116 Identities=9% Similarity=0.046 Sum_probs=62.7
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEEEE---EcCCCCEEEEE-ecCCeEEEEEcCCCCcceEEEEe
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCAS---IAPEQQILAVG-TRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~va---~sp~~~lla~g-~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
..++.+.||++++....++.. .|...... . ...+... ...++..++.. +.||.+..++..+ +.....+..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~-~---~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~ 85 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHI-IWSIEPEN-F---QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSI 85 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEE-EEEECGGG-S---CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEH
T ss_pred EEEEEeCCCeEEEEECCCCcE-EEEecCCc-c---CCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeecc
Confidence 446778899999987766654 47765430 0 0111100 00123334343 5788888888766 422222222
Q ss_pred ecCCCCCCCCCCeEE--------EEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 003356 298 YDWGYSMDDTGPVSC--------IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (827)
Q Consensus 298 ~~~~~~~~h~~~V~~--------l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~~ 347 (827)
.... ...++.. .-=+-++..+.+|+.+|.+..-|..+|+.+.++..
T Consensus 86 ~~lv----~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 86 RQLV----STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HHHH----TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccce----eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1100 1122221 00001345777888889999999999998887754
No 356
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=28.43 E-value=4.4e+02 Score=26.03 Aligned_cols=65 Identities=20% Similarity=0.164 Sum_probs=37.2
Q ss_pred CccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEee-cCCCeEEEEecCCcEEE
Q 003356 78 DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-SDNKHMLLGLSDGSLYS 156 (827)
Q Consensus 78 Dg~~lav~t~dg~l~l~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~-~d~~~llv~t~dg~i~~ 156 (827)
+...++.+|.+|+++-..+..-. . ...+ +. .+.++..+.-+..+. ...+.+++.|.+|.+.+
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~-----~--~~~G--~~--------~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r 141 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFE-----Y--KAQG--MP--------IIKLTEGDEVVSIASSVDETHILLFTKKGRVAR 141 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTT-----T--CSTT--EE--------CSCCCTTCCEEEEEECCSSCEEEEEETTSEEEE
T ss_pred CCCEEEEEeCCCEEEEEEHHHhh-----h--hcCC--eE--------EEecCCCCEEEEEEEeCCCCEEEEEECCCEEEE
Confidence 56799999999999888764211 0 0000 01 011222222232332 34468999999999988
Q ss_pred Eec
Q 003356 157 ISW 159 (827)
Q Consensus 157 ~~w 159 (827)
+.-
T Consensus 142 ~~~ 144 (276)
T 3no0_A 142 FSV 144 (276)
T ss_dssp EEG
T ss_pred EEh
Confidence 754
No 357
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=28.13 E-value=4.5e+02 Score=26.02 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred CCCCEEEEEeCCc--------------eE-EEEcCCCeEEee
Q 003356 462 KDGMFLAVAGLHG--------------LI-LYDIRQKKWRVF 488 (827)
Q Consensus 462 pdG~~lavag~dg--------------~i-iwd~~t~~w~~f 488 (827)
-+++.++.||.++ .+ .||+.+++|+..
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 3677888887643 35 899999999865
No 358
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=28.11 E-value=1.5e+02 Score=33.47 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=35.4
Q ss_pred EEEcCCCCEEEEEecC------------CeEEEEEcCCCCcceEEEEeecCCCCCCCCCCeEEEEECCCCCEEEEE
Q 003356 262 ASIAPEQQILAVGTRR------------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (827)
Q Consensus 262 va~sp~~~lla~g~~d------------g~v~vw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spDg~~Lasg 325 (827)
++|+|+|++++.--.+ ..+.+.+..+ ++..+-+.+. ....++.++|+|||+.|++.
T Consensus 481 L~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~-g~~~rf~~~P-------~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGP-------IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT-CCEEEEEECC-------TTCEEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEecCCCcccccccccccceEEEEeCCC-CeEEEEEeCC-------CCccCcCeeECCCCCEEEEE
Confidence 8999999976643211 2344444443 4444444441 24579999999999988775
No 359
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=27.84 E-value=5.2e+02 Score=26.69 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=33.5
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcceEEEEe
Q 003356 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (827)
Q Consensus 257 ~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~ 297 (827)
.-++.+.+|++...+..-+.-|.+.+||+.+ +.++..-+.
T Consensus 260 DFPVamqvs~kygviyviTK~G~ihlyDleT-gt~i~~nrI 299 (365)
T 2xzh_A 260 DFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRI 299 (365)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEEEEEC
T ss_pred CceEEEEecccCCEEEEEeCCcEEEEEEccc-CcEEEEecc
Confidence 3477899999999999999999999999998 776665444
No 360
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=27.55 E-value=6.9e+02 Score=28.01 Aligned_cols=238 Identities=10% Similarity=-0.003 Sum_probs=0.0
Q ss_pred CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcc
Q 003356 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (827)
Q Consensus 142 ~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (827)
.+-+++-+....|.+++.++...... .....-.....++|++..+
T Consensus 5 p~~~Ll~s~~~~I~~i~l~~~~~~~~-----------------------------------~~~~~~~~~~~l~~d~~~~ 49 (628)
T 4a0p_A 5 PEAFLLFSRRADIRRISLETNNNNVA-----------------------------------IPLTGVKEASALDFDVTDN 49 (628)
T ss_dssp CCCEEEEEETTEEEEEESSCTTCEEE-----------------------------------CCCCSCSCEEEEEEETTTT
T ss_pred CCcEEEEEeCCcEEEEECCCCCcceE-----------------------------------EEcCCCCceEEEEEECCCC
Q ss_pred eEEEEEeCCcEEEEeeccCccccceeeccceecCCCCcEE-EEEc-CCCCEEEEEecCCeEEEEEcCCCCcceEEEEeec
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIA-PEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-va~s-p~~~lla~g~~dg~v~vw~~~~~~~~~~~l~~~~ 299 (827)
.+.+.......+.....+++....-...+ ..... +|+. ..+++..+-...+.|.+.+++. ......+..
T Consensus 50 ~lywtD~~~~~I~r~~~~g~~~~~v~~~g------~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG-~~~~~l~~~-- 120 (628)
T 4a0p_A 50 RIYWTDISLKTISRAFMNGSALEHVVEFG------LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG-QHRQVLVWK-- 120 (628)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSS------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-TTCEEEECS--
T ss_pred EEEEEECCCCeEEEEECCCCCcEEEEeCC------CCCcceEEEEeCCCEEEEEECCCCEEEEEecCC-CcEEEEEeC--
Q ss_pred CCCCCCCCCCeEEEEECC-CCCEEEEEEc-CCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc----
Q 003356 300 WGYSMDDTGPVSCIAWTP-DNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---- 373 (827)
Q Consensus 300 ~~~~~~h~~~V~~l~~sp-Dg~~Lasg~~-Dg~v~vWs~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---- 373 (827)
.-..-..|++.| +|.+..+-+. .+.|...++.|........+. ..-+.+++++++ ..+.-..
T Consensus 121 ------~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~--~~P~GlalD~~~----~~LY~aD~~~~ 188 (628)
T 4a0p_A 121 ------DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNV--GRANGLTIDYAK----RRLYWTDLDTN 188 (628)
T ss_dssp ------SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSC--SSEEEEEEETTT----TEEEEEETTTT
T ss_pred ------CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCC--CCcceEEEcccc----CEEEEEECCCC
Q ss_pred eeEEEccCCceEEEEecCCcceE-EEEecceeeeecccCCCeeeeEEEEcCCeEEEEecCCCC
Q 003356 374 SMMQWDEYGYRLYAIEEGSSERV-LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (827)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v-~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~d~~ 435 (827)
.+...+.++.........-.... +++.-++..++-...+.+...+...+.++..+..+...+
T Consensus 189 ~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p 251 (628)
T 4a0p_A 189 LIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYV 251 (628)
T ss_dssp EEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSC
T ss_pred EEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEecCCCCc
No 361
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.50 E-value=75 Score=23.96 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcCCCCCchhHHHHHhhhhhhcccccCCCCCCC
Q 003356 763 CLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRYLTLHKP 815 (827)
Q Consensus 763 ~ilr~~l~~~~~~~a~~~a~~~~~l~~f~h~LE~Llh~vle~e~~~~~~~~~~ 815 (827)
..|.+|+..+-..+...-|-.+..=.=...|+|||+-+.=|.+. .+|++.|
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~--d~p~~~~ 61 (64)
T 2crn_A 11 SLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSL--DDPISGP 61 (64)
T ss_dssp SSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTS--CCSCCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCccc--cCCCCCC
Confidence 35678887776666555555444334577899999977544444 4455444
No 362
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=26.95 E-value=5.5e+02 Score=26.60 Aligned_cols=272 Identities=12% Similarity=-0.010 Sum_probs=125.0
Q ss_pred eEEEEEecceEEEEE-ccCeEEEeecCCce-------eEEEEEEeChHhhhhcCcccEEEEcCCccEEEEEecCcEEEEE
Q 003356 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHK-------VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIF 94 (827)
Q Consensus 23 ~vv~fspdg~lla~~-~~~~v~IW~~~~~~-------~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~t~dg~l~l~ 94 (827)
.++.++-.....+++ .+++|..|-.+..+ .......+- ..+. .-.+..++.+......++.+.+|.|..|
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v-~~~~-~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLL-ESIQ-HVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEEC-GGGT-TSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEc-cccc-CCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 455565555555555 67889998654211 011111111 1111 1122346778888888888999998888
Q ss_pred EEEecCceeecCCCCCCCceeeeEeeEeecccccccccceEEEeecCCCeEEEEecCCcEEEEecCCccCcceeecccCC
Q 003356 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSN 174 (827)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~ 174 (827)
--.... + .+........ .+.....+ ....|..+++.....++-+.+|.++.|-.. ...+.- .
T Consensus 132 G~n~~G--q-LG~g~~~~~~------~p~~v~~l--~~~~i~~va~G~~hs~alt~~G~v~~wG~n--~~GqLG-----~ 193 (389)
T 3kci_A 132 GEAEDG--K-LGHGNRSPCD------RPRVIESL--RGIEVVDVAAGGAHSACVTAAGDLYTWGKG--RYGRLG-----H 193 (389)
T ss_dssp ECCGGG--T-TCSSSCCCEE------EEEECGGG--TTSCEEEEEECSSEEEEEETTSCEEEEECC--GGGTTC-----S
T ss_pred eCCCCC--c-CCCCCCccCc------CCeEeccc--CCCeEEEEEeCcCeEEEEeCCCeEEEeCCC--CCCCcC-----C
Confidence 643211 0 1000000000 11111111 123567777788888888899998765332 211110 0
Q ss_pred CCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcceEEEEEeCCcEEEEeeccCc-ccc---ceeecc
Q 003356 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG-LKL---AEFIKI 250 (827)
Q Consensus 175 ~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~-~~~---~~~~~~ 250 (827)
........|. .. .......+.++.........++++.||+++.++.++.. +-. -....+
T Consensus 194 ~~~~~~~~p~----------------~v-~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p 256 (389)
T 3kci_A 194 SDSEDQLKPK----------------LV-EALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVP 256 (389)
T ss_dssp SSCCCEEEEE----------------EC-GGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEE
T ss_pred CCCcccccce----------------Ee-cccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCcccc
Confidence 0000000000 00 01123346666544333567888999999998875321 100 000111
Q ss_pred ceec--CCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCCCCcc-----eEEEEeecCCCCCCCCCCeEEEEECCCCCEEE
Q 003356 251 DKEL--GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASL-----IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (827)
Q Consensus 251 ~~~~--~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~~~~~-----~~~l~~~~~~~~~~h~~~V~~l~~spDg~~La 323 (827)
.... .....+.++-. ....+.-..||.|..|-....+++ ........... -....|..++-.. ...+
T Consensus 257 ~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~--l~~~~v~~ia~G~--~h~~ 330 (389)
T 3kci_A 257 MKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG--LQGKKVIAIATGS--LHCV 330 (389)
T ss_dssp EECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG--GTTCCEEEEEECS--SEEE
T ss_pred EEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEecc--CCCCCEEEEEecc--CeEE
Confidence 1111 11122224332 333334467899999986542221 00000000000 0123466665443 3444
Q ss_pred EEEcCCcEEEEecc
Q 003356 324 VGWKSRGLTVWSVS 337 (827)
Q Consensus 324 sg~~Dg~v~vWs~~ 337 (827)
+-.+||.|..|=..
T Consensus 331 al~~~G~v~~wG~n 344 (389)
T 3kci_A 331 CCTEDGEVYTWGDN 344 (389)
T ss_dssp EEETTCCEEEEECC
T ss_pred EECCCCCEEEeeCC
Confidence 44677888888653
No 363
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.13 E-value=1.2e+02 Score=24.12 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCCCCchhHHHHHhhhhhhcccccCCCCCC
Q 003356 762 HCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRYLTLHK 814 (827)
Q Consensus 762 ~~ilr~~l~~~~~~~a~~~a~~~~~l~~f~h~LE~Llh~vle~e~~~~~~~~~ 814 (827)
...|.+|+..|-..+...-|-.+.. .=-..|+|||+.+.=|.+.+.+-+.|+
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t~-~nve~A~ewL~~~~~d~d~d~pl~~~~ 81 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLNH-MSVPQAMEWLIEHAEDPTIDTPLSGPS 81 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-SCHHHHHHHHHHGGGCSTTCCCCCCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-CCHHHHHHHHHHCCCCcccccCCCCCC
Confidence 5677888877765555555544332 346789999997765555544444443
No 364
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=25.91 E-value=5.2e+02 Score=25.97 Aligned_cols=77 Identities=12% Similarity=0.111 Sum_probs=42.2
Q ss_pred ccEEEEEEcCCcceEEEEEeCCcEEEEeeccCccccce----eeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEE
Q 003356 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAE----FIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (827)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~ 284 (827)
..+..+........++.++.+|+++-....+ +.... ....-.+..-...+.+..-+++..+.+.+..|.++-.+
T Consensus 146 d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~--v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~ 223 (307)
T 1zi0_A 146 DELIGVDLTSGEDEVMLFSAEGKVVRFKESS--VRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTA 223 (307)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGG--SCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEEC
T ss_pred CEEEEEEEeCCCCEEEEECCCCcEEEEEHHH--cCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEE
Confidence 3455544444445678888999988765543 22111 11111112222333344334556788889999988877
Q ss_pred cCC
Q 003356 285 LAE 287 (827)
Q Consensus 285 ~~~ 287 (827)
+.+
T Consensus 224 ~~e 226 (307)
T 1zi0_A 224 VAE 226 (307)
T ss_dssp GGG
T ss_pred HHH
Confidence 654
No 365
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=25.72 E-value=1.3e+02 Score=27.48 Aligned_cols=49 Identities=8% Similarity=0.158 Sum_probs=35.6
Q ss_pred EEEEEEcCCCCEEEEEeCCceE-EEEcCCCeEEeeCCccceEEEEEEEEEE
Q 003356 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW 504 (827)
Q Consensus 455 I~~va~SpdG~~lavag~dg~i-iwd~~t~~w~~f~~~~~e~~~~v~gl~W 504 (827)
+.-+.|+|+|.+.|++...|.. =.|+..+.|.-+..... ....|..+.|
T Consensus 112 lEp~eF~p~~~w~a~~~esG~f~dvDLse~eW~DYDEk~~-~~VsI~e~~~ 161 (164)
T 1zso_A 112 IELIDFFPSNNFIVEDTKGKLYYDVNLSDQNWCDYNEEHE-MCVGIYNLEY 161 (164)
T ss_dssp EEEEEECCCSCEEEEETTSCEEEEECCTTSCEEEEETTTT-EEEEEEEEEE
T ss_pred eeeEEEecCCcEEEEECCCCcEEeeecCCCceeccccCCC-CeEEEEEEEE
Confidence 3457899999999999777744 57888889998855443 3455666665
No 366
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=23.07 E-value=1.1e+02 Score=34.06 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred EEEEecceEEEEEccCeE-----------EEeecCCceeEEEEEEeChHhhhhcCcccEEEEcCCccEEEEE
Q 003356 25 IYFKVNNGLLLIASPCHI-----------ELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVV 85 (827)
Q Consensus 25 v~fspdg~lla~~~~~~v-----------~IW~~~~~~~~l~~~~r~~~s~~~~G~~~~v~wSPDg~~lav~ 85 (827)
|.|.++|++...-..+.- .+|..+.....+..+...+.. .+...++||||+++|+++
T Consensus 481 L~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~----aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG----CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTT----CEEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCC----ccccCCEECCCCCEEEEE
No 367
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=23.00 E-value=2e+02 Score=32.07 Aligned_cols=71 Identities=6% Similarity=0.154 Sum_probs=48.4
Q ss_pred EEEcCCCCEEEEEec-CCeEEEEEcCCC-----Ccc---eEEEEe-ecCCCCCCCCCCeEEEEECCCCCEEEEEEcCCcE
Q 003356 262 ASIAPEQQILAVGTR-RGVVELYDLAES-----ASL---IRTVSL-YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (827)
Q Consensus 262 va~sp~~~lla~g~~-dg~v~vw~~~~~-----~~~---~~~l~~-~~~~~~~~h~~~V~~l~~spDg~~Lasg~~Dg~v 331 (827)
+.++|||+++++++. +.+|.|++++.. .+. ...+.. .+. -.| -...+|.++|....+-.-|..|
T Consensus 328 v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-----GlG-PlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 328 CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-----GLG-PLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-----CSC-EEEEEECSSSEEEEEETTTTEE
T ss_pred eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-----CCc-ccEEEECCCCceEeeeeecceE
Confidence 688999998887664 779999998741 111 001111 011 123 4668999999777788899999
Q ss_pred EEEeccC
Q 003356 332 TVWSVSG 338 (827)
Q Consensus 332 ~vWs~~~ 338 (827)
.-|++..
T Consensus 402 vkWni~~ 408 (638)
T 3sbq_A 402 VKWNMEE 408 (638)
T ss_dssp EEEEHHH
T ss_pred EEEeccH
Confidence 9999854
No 368
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=22.35 E-value=5.7e+02 Score=25.20 Aligned_cols=115 Identities=13% Similarity=0.033 Sum_probs=60.7
Q ss_pred CCeEEEEecCCcEEEEecCCccCcceeecccCCCCcccceecccCCCCccccccCCceeccccCCCcccEEEEEEcCCcc
Q 003356 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (827)
Q Consensus 142 ~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~p~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (827)
...+++.|.+|.+++...+.-. .... ... .+.+. .+..+..+.......
T Consensus 80 ~~~~v~~T~~G~iKr~~l~~~~-~~~~---------G~~--------------------~i~lk-egD~l~~~~~~~~~~ 128 (276)
T 3no0_A 80 GNRLLLATKKGYVKKIPLAEFE-YKAQ---------GMP--------------------IIKLT-EGDEVVSIASSVDET 128 (276)
T ss_dssp CSEEEEEETTSEEEEEEGGGTT-TCST---------TEE--------------------CSCCC-TTCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCEEEEEEHHHhh-hhcC---------CeE--------------------EEecC-CCCEEEEEEEeCCCC
Confidence 4678999999999997654322 1000 000 01111 223454544444455
Q ss_pred eEEEEEeCCcEEEEeeccCccccc--eeeccceecCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcCC
Q 003356 222 LLFVLYSNGQLMSCSVSKKGLKLA--EFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (827)
Q Consensus 222 ~~~~~s~dG~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~va~sp~~~lla~g~~dg~v~vw~~~~ 287 (827)
.++.++.+|+++.....+-...-. .....-.+......+.+..-+++..+...+..|.++...+.+
T Consensus 129 ~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 129 HILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 778899999988765433111000 011111112222333333334566788889999988877765
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=20.73 E-value=1.2e+02 Score=34.88 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=29.2
Q ss_pred CeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 003356 309 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (827)
Q Consensus 309 ~V~~l~~spDg~~Lasg~~Dg~v~vWs~~~~~l~~tl~ 346 (827)
.|.++.+ +..+|++-+.|+++|+||+.+++++.+..
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4565554 57899999999999999999999887653
No 370
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=20.59 E-value=1.9e+02 Score=23.06 Aligned_cols=52 Identities=15% Similarity=0.298 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCCCCchhHHHHHhhhhhhcccccCCCCCCC
Q 003356 762 HCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRYLTLHKP 815 (827)
Q Consensus 762 ~~ilr~~l~~~~~~~a~~~a~~~~~l~~f~h~LE~Llh~vle~e~~~~~~~~~~ 815 (827)
...|.+|+..+-..+...-|-.+..=.--..|+|||+.+.=|.+.+. |++.|
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d~d~--p~~~~ 81 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDA--PISGP 81 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTTS--CSSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccc--CCCCC
Confidence 55678888777666555555333322245689999997765544444 44443
No 371
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.27 E-value=2e+02 Score=21.31 Aligned_cols=53 Identities=6% Similarity=0.161 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCCCCCchhHHHHHhhhhhhcccccCCCCCCCc
Q 003356 761 LHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRYLTLHKPH 816 (827)
Q Consensus 761 L~~ilr~~l~~~~~~~a~~~a~~~~~l~~f~h~LE~Llh~vle~e~~~~~~~~~~~ 816 (827)
-+..|++|+.-+-..+....|-....= --..|+|||+.+.= |.+..+|++.|.
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~A~e~L~~~~~--d~d~d~p~~~p~ 61 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHID--DLDAEAAMSGPS 61 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTS-CSHHHHHHHHHHHH--SCCSSSCCCCSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC--CcccccCCCCCC
Confidence 356788888766444444444333321 37899999987653 344456776664
Done!