BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003359
(827 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9HFF5|PDS5_SCHPO Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pds5 PE=1 SV=1
Length = 1205
Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 1/150 (0%)
Query: 54 RDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSA 113
RD++LP + L+ N+LL D +R CI E+ R+ APD+P+ +++ FQ+ +
Sbjct: 44 RDSVLPVARSLVNNNLLHHKDKGIRSYTLCCIVELLRLCAPDAPFTLSQLEDIFQVILKI 103
Query: 114 FENLSHASGRYYMKALSILDTVAKVRSCLLMLDL-ECDKLVVEMFQHFLKVIRSNHPHFV 172
L + YY + IL++++ V+S +L++DL ++ +V +F+ F + R V
Sbjct: 104 LSGLMNQESTYYPQIYEILESLSNVKSAVLIVDLPNAEEFLVNIFRLFFDLARKGTTKNV 163
Query: 173 FAAMETIMTLVIDESEDVSWDLLRILLASV 202
M I+ +I+E + L IL A +
Sbjct: 164 EFYMLDIINQLINEINTIPAAALNILFAQL 193
>sp|Q04264|PDS5_YEAST Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PDS5 PE=1 SV=1
Length = 1277
Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 6/178 (3%)
Query: 63 GLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASG 122
L++ LL+ D+ +R C+S+I R+ APD+PY D + + F+L +S FE L
Sbjct: 58 ALVSRKLLKHKDVGIRAFTACCLSDILRLYAPDAPYTDAQLTDIFKLVLSQFEQLGDQEN 117
Query: 123 RYYMKALSILDTVAKVRSCLLMLDL-ECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMT 181
Y+++ ++ + + RS +L+ DL + L++E+F F +S P +F + I+
Sbjct: 118 GYHIQQTYLITKLLEYRSIVLLADLPSSNNLLIELFHIFYDPNKS-FPARLFNVIGGILG 176
Query: 182 LVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSR 239
VI E + V ++LR++ N + P G V + C ++ L + +R
Sbjct: 177 EVISEFDSVPLEVLRLIFNKFLTYNPNEIPE----GLNVTSDCGYEVSLILCDTYSNR 230
>sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus
GN=PDS5A PE=2 SV=2
Length = 1330
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 101/197 (51%), Gaps = 4/197 (2%)
Query: 29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
DEV+ L V +++Q S + LP L + LR + DVRL V C+++I
Sbjct: 33 DEVVKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 91
Query: 89 TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
RI AP++PY + +K+ F + L + + +L+ +A V+S + +L
Sbjct: 92 FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 151
Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
E C+++ +++F+ VI ++H V M +M+ +I E + V+ +LL +L ++ +
Sbjct: 152 EDCNEIFIQLFRTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 211
Query: 207 QDVSPTSWKLGEKVFTK 223
++++ ++ L KV K
Sbjct: 212 KNLNKQAFDLA-KVLLK 227
>sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens
GN=PDS5A PE=1 SV=1
Length = 1337
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 4/197 (2%)
Query: 29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
DE+I L V +++Q S + LP L + LR + DVRL V C+++I
Sbjct: 39 DEMIKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 97
Query: 89 TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
RI AP++PY + +K+ F + L + + +L+ +A V+S + +L
Sbjct: 98 FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 157
Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
E C+++ +++F+ VI ++H V M +M+ +I E + V+ +LL +L ++ +
Sbjct: 158 EDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 217
Query: 207 QDVSPTSWKLGEKVFTK 223
++++ S+ L KV K
Sbjct: 218 KNLNKQSFDLA-KVLLK 233
>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus
norvegicus GN=Pds5a PE=2 SV=1
Length = 1333
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 4/197 (2%)
Query: 29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
DE+I L V +++Q S + LP L + LR + DVRL V C+++I
Sbjct: 38 DEMIKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 96
Query: 89 TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
RI AP++PY + +K+ F + L + + +L+ +A V+S + +L
Sbjct: 97 FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 156
Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
E C+++ +++F+ VI ++H V M +M+ +I E + V+ +LL +L ++ +
Sbjct: 157 EDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 216
Query: 207 QDVSPTSWKLGEKVFTK 223
++++ S+ L KV K
Sbjct: 217 KNLNKQSFDLA-KVLLK 232
>sp|Q6A026|PDS5A_MOUSE Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus
GN=Pds5a PE=3 SV=3
Length = 1332
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 4/197 (2%)
Query: 29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
DE+I L V +++Q S + LP L + LR + DVRL V C+++I
Sbjct: 38 DEMIKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 96
Query: 89 TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
RI AP++PY + +K+ F + L + + +L+ +A V+S + +L
Sbjct: 97 FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 156
Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
E C+++ +++F+ VI ++H V M +M+ +I E + V+ +LL +L ++ +
Sbjct: 157 EDCNEIFIQLFRTLFSVINNSHNTKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 216
Query: 207 QDVSPTSWKLGEKVFTK 223
++++ S+ L KV K
Sbjct: 217 KNLNKQSFDLA-KVLLK 232
>sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio
GN=pds5a PE=2 SV=1
Length = 1320
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 102/204 (50%), Gaps = 3/204 (1%)
Query: 29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
DEV+ L V +++Q S + L L + LR + DVRL V C+++I
Sbjct: 34 DEVVKRLKLVVKTYMDMDQD-SEEEKQQYLALALHLASEFFLRNPNKDVRLLVACCLADI 92
Query: 89 TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
RI AP++PY + +KE F + L + + +L+ +A V+S + +L
Sbjct: 93 FRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 152
Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
E C+++ +++F+ VI ++H V M +M+ +I E + V+ +LL +L ++ +
Sbjct: 153 EDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGVTQELLDTILINLIPAH 212
Query: 207 QDVSPTSWKLGEKVFTKCAAKLKT 230
++++ ++ L + + ++T
Sbjct: 213 KNLNKQAYDLARTLLKRTVQTIET 236
>sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus
laevis GN=pds5b-b PE=2 SV=2
Length = 1464
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 99/193 (51%), Gaps = 6/193 (3%)
Query: 64 LITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASG 122
L ++ L+ D DVRL V C+++I RI AP++PY + +K+ F + L
Sbjct: 63 LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122
Query: 123 RYYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMT 181
+ + +L+ +A V+S + +LE C+++ ++++ VI + H V M +M+
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDCNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182
Query: 182 LVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLK---TNLKEAVQS 238
++ E + VS +LL +L ++ +++++ ++ L + + + A ++ TN V
Sbjct: 183 SIVCEGDTVSQELLDSVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLM 242
Query: 239 RG-IALDDYAEIV 250
G ++ D +E V
Sbjct: 243 LGKTSISDLSEHV 255
>sp|Q4KLU7|PD5AB_XENLA Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus
laevis GN=pds5a-b PE=1 SV=1
Length = 1323
Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 101/199 (50%), Gaps = 3/199 (1%)
Query: 29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
DEV+ L V +++Q S + LP L ++ LR + DVRL V C+++I
Sbjct: 31 DEVVKRLKMVVKTFMDMDQD-SEEEKQQYLPLALHLSSDFFLRNPNKDVRLLVACCLADI 89
Query: 89 TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
RI AP++PY + +KE F + L + + +L+ +A V+S + +L
Sbjct: 90 FRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 149
Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
E C+++ +++F+ VI ++H V M +M+ + E + V+ + L +L ++ +
Sbjct: 150 EDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSITMEGDGVTQEQLDSILINLISAH 209
Query: 207 QDVSPTSWKLGEKVFTKCA 225
++++ ++ L + + + A
Sbjct: 210 KNLNKQAFDLAKVLLKRTA 228
>sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus
GN=Pds5b PE=1 SV=1
Length = 1446
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 98/193 (50%), Gaps = 6/193 (3%)
Query: 64 LITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASG 122
L ++ L+ D DVRL V C+++I RI AP++PY + +K+ F + L
Sbjct: 63 LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122
Query: 123 RYYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMT 181
+ + +L+ +A V+S + +LE +++ ++++ VI + H V M +M+
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182
Query: 182 LVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLK---TNLKEAVQS 238
+I E + VS +LL +L ++ +++++ ++ L + + + A ++ TN V
Sbjct: 183 SIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLM 242
Query: 239 RG-IALDDYAEIV 250
G ++ D +E V
Sbjct: 243 LGKTSISDLSEHV 255
>sp|Q6TRW4|PDS5B_RAT Sister chromatid cohesion protein PDS5 homolog B OS=Rattus
norvegicus GN=Pds5b PE=2 SV=2
Length = 1447
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 98/193 (50%), Gaps = 6/193 (3%)
Query: 64 LITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASG 122
L ++ L+ D DVRL V C+++I RI AP++PY + +K+ F + L
Sbjct: 63 LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122
Query: 123 RYYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMT 181
+ + +L+ +A V+S + +LE +++ ++++ VI + H V M +M+
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182
Query: 182 LVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLK---TNLKEAVQS 238
+I E + VS +LL +L ++ +++++ ++ L + + + A ++ TN V
Sbjct: 183 SIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLM 242
Query: 239 RG-IALDDYAEIV 250
G ++ D +E V
Sbjct: 243 LGKTSISDLSEHV 255
>sp|Q4QXM3|PD5AA_XENLA Sister chromatid cohesion protein PDS5 homolog A-A OS=Xenopus
laevis GN=pds5a-a PE=1 SV=1
Length = 1323
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 100/199 (50%), Gaps = 3/199 (1%)
Query: 29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
DEV+ L V +++Q S + LP L + LR + DVRL V C+++I
Sbjct: 31 DEVVKRLKMVVKTYMDMDQD-SEEEKQQYLPLALHLSSEFFLRNPNKDVRLLVACCLADI 89
Query: 89 TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
RI AP++PY + +KE F + L + + +L+ +A V+S + +L
Sbjct: 90 FRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 149
Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
E C+++ +++F+ VI ++H V M +M+ + E + V+ + L +L ++ +
Sbjct: 150 EDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSITMEGDGVTQEQLDSILINLISAH 209
Query: 207 QDVSPTSWKLGEKVFTKCA 225
++++ ++ L + + + A
Sbjct: 210 KNLNKQAFDLAKVLLKRTA 228
>sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens
GN=PDS5B PE=1 SV=1
Length = 1447
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 98/193 (50%), Gaps = 6/193 (3%)
Query: 64 LITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASG 122
L ++ L+ D DVRL V C+++I RI AP++PY + +K+ F + L
Sbjct: 63 LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122
Query: 123 RYYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMT 181
+ + +L+ +A V+S + +LE +++ ++++ VI + H V M +M+
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182
Query: 182 LVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLK---TNLKEAVQS 238
+I E + VS +LL +L ++ +++++ ++ L + + + A ++ TN V
Sbjct: 183 SIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLM 242
Query: 239 RG-IALDDYAEIV 250
G ++ D +E V
Sbjct: 243 LGKTSISDLSEHV 255
>sp|Q5F3U9|PDS5B_CHICK Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus
GN=PDS5B PE=2 SV=3
Length = 1412
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 98/193 (50%), Gaps = 6/193 (3%)
Query: 64 LITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASG 122
L ++ L+ D DVRL V C+++I RI AP++PY + +K+ F + L
Sbjct: 63 LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122
Query: 123 RYYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMT 181
+ + +L+ +A V+S + +LE +++ ++++ VI + H V M +M+
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182
Query: 182 LVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLK---TNLKEAVQS 238
+I E + VS +LL +L ++ +++++ ++ L + + + A ++ TN V
Sbjct: 183 SIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLM 242
Query: 239 RG-IALDDYAEIV 250
G ++ D +E V
Sbjct: 243 LGKTSISDLSEHV 255
>sp|Q498H0|PD5BA_XENLA Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus
laevis GN=pds5b-a PE=1 SV=1
Length = 1448
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 98/193 (50%), Gaps = 6/193 (3%)
Query: 64 LITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASG 122
L ++ L+ D DVRL V C+++I RI AP++PY + +K+ F + L
Sbjct: 63 LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFISRQLKGLEDTKS 122
Query: 123 RYYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMT 181
+ + +L+ +A V+S + +LE +++ ++++ VI + H V M +M+
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182
Query: 182 LVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLK---TNLKEAVQS 238
++ E + VS +LL +L ++ +++++ ++ L + + + A ++ TN V
Sbjct: 183 SIVCEGDTVSQELLDSVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLM 242
Query: 239 RG-IALDDYAEIV 250
G ++ D +E V
Sbjct: 243 LGKTSISDLSEHV 255
>sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6
PE=1 SV=2
Length = 1324
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIKGGS 768
+++VG +++V+WP+D+ +Y G V YD + KH + Y DG+EE L+L KE+ E + G
Sbjct: 121 GDEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEWVVGEK 180
Query: 769 SAE 771
S +
Sbjct: 181 SGD 183
>sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana
GN=ATX2 PE=2 SV=1
Length = 1083
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 711 QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIKGGSSA 770
+G + KV+WP+D +Y G + Y+ K H + Y DGD E L L++E+ IK S
Sbjct: 219 HFIGLQCKVFWPLDAVWYPGSIVGYNVETKHHIVKYGDGDGEELALRREK---IKFLISR 275
Query: 771 EEQETDVLKPDGSSDILPKGKEEIEFELV 799
++ E +K G++D++ G++ E ++
Sbjct: 276 DDMELLNMK-FGTNDVVVDGQDYDELVIL 303
>sp|Q9C5X4|ATX1_ARATH Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana
GN=ATX1 PE=1 SV=2
Length = 1062
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIKGGSSAE 771
+G + KV+WP+D +Y+G + Y +K++ + Y DG +E + + E+IK S E
Sbjct: 206 FIGLQCKVFWPLDALWYEGSIVGYSAERKRYTVKYRDGCDEDIVFDR---EMIKFLVSRE 262
Query: 772 EQETDVLK 779
E E LK
Sbjct: 263 EMELLHLK 270
>sp|Q552Q7|PDS5_DICDI Sister chromatid cohesion protein PDS5 homolog OS=Dictyostelium
discoideum GN=pds5 PE=3 SV=1
Length = 1450
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 75 MDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILD- 133
++RL + C+SEI RI AP P+D ++K F+L + + + +L+
Sbjct: 214 FEIRLMTSCCLSEIFRIYAPTLPFDMVVLKVVFKLFTEQVLQGDKVDKKLFPQYFQMLER 273
Query: 134 -TVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAM-ETIMTLVIDESEDVS 191
+V KV + L ++D ++ F+ L + + H M T++ +++ E+V
Sbjct: 274 LSVIKVFALLALVD---SSMLTPFFKDCLSRVHGDKEHQPMDIMFSTLLNTILESLEEVP 330
Query: 192 WDLLRILLASVRKENQDVSPTS 213
L LL S+ + + PTS
Sbjct: 331 TSLWNELLESLIEREKGGVPTS 352
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.126 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 306,420,060
Number of Sequences: 539616
Number of extensions: 13229276
Number of successful extensions: 49092
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 1401
Number of HSP's that attempted gapping in prelim test: 41680
Number of HSP's gapped (non-prelim): 5092
length of query: 827
length of database: 191,569,459
effective HSP length: 126
effective length of query: 701
effective length of database: 123,577,843
effective search space: 86628067943
effective search space used: 86628067943
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)