Query 003359
Match_columns 827
No_of_seqs 230 out of 399
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 22:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8d_A Medulloblastoma antigen 97.0 0.0011 3.7E-08 56.8 6.6 44 712-757 8-51 (67)
2 2equ_A PHD finger protein 20-l 97.0 0.001 3.4E-08 57.8 6.2 52 709-764 8-59 (74)
3 1mhn_A SurviVal motor neuron p 97.0 0.0014 4.7E-08 53.8 6.5 46 713-758 6-52 (59)
4 2l8d_A Lamin-B receptor; DNA b 97.0 0.0016 5.4E-08 55.5 6.7 44 712-755 11-54 (66)
5 2dig_A Lamin-B receptor; tudor 96.9 0.0018 6.3E-08 55.3 6.8 44 712-755 14-57 (68)
6 2g3r_A Tumor suppressor P53-bi 96.9 0.00097 3.3E-08 62.8 5.7 46 709-755 3-48 (123)
7 4a4f_A SurviVal of motor neuro 96.8 0.002 6.9E-08 53.8 6.5 48 711-758 9-57 (64)
8 3qii_A PHD finger protein 20; 96.8 0.002 6.9E-08 57.5 6.7 46 710-757 21-66 (85)
9 3s6w_A Tudor domain-containing 96.8 0.0025 8.6E-08 51.2 6.3 46 713-758 4-50 (54)
10 1g5v_A SurviVal motor neuron p 96.8 0.0025 8.5E-08 56.9 6.8 48 711-758 11-59 (88)
11 2ldm_A Uncharacterized protein 95.3 0.00069 2.3E-08 59.9 0.0 43 713-757 9-51 (81)
12 1ssf_A Transformation related 96.3 0.0053 1.8E-07 59.9 6.1 49 707-756 5-53 (156)
13 2d9t_A Tudor domain-containing 96.2 0.0088 3E-07 51.8 6.6 54 711-766 10-64 (78)
14 3pnw_C Tudor domain-containing 96.1 0.011 3.6E-07 51.4 6.8 46 712-757 19-65 (77)
15 2eqj_A Metal-response element- 95.9 0.016 5.3E-07 49.7 6.6 45 712-757 15-59 (66)
16 4hcz_A PHD finger protein 1; p 95.0 0.053 1.8E-06 45.4 6.6 44 713-757 6-49 (58)
17 2eqk_A Tudor domain-containing 93.7 0.12 4.1E-06 46.2 6.4 51 713-765 24-74 (85)
18 2m0o_A PHD finger protein 1; t 93.4 0.11 3.9E-06 45.6 5.5 46 711-757 27-72 (79)
19 3fdr_A Tudor and KH domain-con 92.3 0.27 9.2E-06 43.1 6.7 46 711-757 28-74 (94)
20 2xk0_A Polycomb protein PCL; t 90.8 0.39 1.3E-05 41.4 5.7 43 712-757 17-59 (69)
21 2qk2_A LP04448P; mini spindles 90.6 4.7 0.00016 39.2 14.2 151 57-228 54-207 (242)
22 2wac_A CG7008-PA; unknown func 90.5 0.41 1.4E-05 46.8 6.6 50 712-765 53-103 (218)
23 2e5p_A Protein PHF1, PHD finge 90.1 0.69 2.4E-05 39.8 6.6 46 711-757 10-55 (68)
24 2diq_A Tudor and KH domain-con 90.0 0.33 1.1E-05 43.8 5.0 45 712-757 34-79 (110)
25 2e5q_A PHD finger protein 19; 88.2 0.74 2.5E-05 39.1 5.4 45 712-757 9-53 (63)
26 2bpt_A Importin beta-1 subunit 87.6 4.7 0.00016 45.5 13.2 162 69-236 506-682 (861)
27 1u6g_C TIP120 protein, CAND1; 85.5 18 0.00063 43.5 17.5 117 69-202 56-184 (1230)
28 1u6g_C TIP120 protein, CAND1; 85.4 6.6 0.00022 47.3 13.6 64 70-138 95-161 (1230)
29 3oc3_A Helicase MOT1, MOT1; re 85.3 1.2 4.3E-05 51.8 7.0 146 69-242 307-452 (800)
30 3ntk_A Maternal protein tudor; 84.8 1.1 3.6E-05 43.3 5.4 42 711-753 48-90 (169)
31 3dlm_A Histone-lysine N-methyl 82.8 1.9 6.4E-05 44.3 6.4 53 706-758 64-120 (213)
32 4b9w_A TDRD1, tudor domain-con 82.7 2.1 7.2E-05 42.1 6.7 50 713-765 68-118 (201)
33 4fdd_A Transportin-1; heat rep 81.9 4.1 0.00014 47.0 9.6 157 73-237 495-673 (852)
34 1qgr_A Protein (importin beta 81.4 8.4 0.00029 43.5 11.7 26 69-94 416-441 (876)
35 1wa5_C Importin alpha RE-expor 80.9 13 0.00045 43.8 13.6 53 56-110 493-557 (960)
36 2bpt_A Importin beta-1 subunit 80.4 15 0.00051 41.4 13.2 154 69-234 377-541 (861)
37 4b9x_A TDRD1, tudor domain-con 80.4 2.2 7.6E-05 42.8 6.0 44 713-757 68-112 (226)
38 2rnz_A Histone acetyltransfera 79.3 7 0.00024 35.4 8.2 55 695-751 10-66 (94)
39 3h8z_A FragIle X mental retard 78.9 2.7 9.4E-05 39.9 5.7 51 712-766 62-119 (128)
40 2qk1_A Protein STU2; STU2P, XM 78.7 16 0.00053 36.8 11.6 164 58-234 59-233 (249)
41 1ibr_B P95, importin beta-1 su 75.7 8.9 0.0003 39.6 9.0 109 60-185 91-203 (462)
42 2hqx_A P100 CO-activator tudor 75.4 3.4 0.00012 41.5 5.7 43 712-756 67-110 (246)
43 4ffb_C Protein STU2; tubulin f 73.0 5.7 0.0002 39.8 6.6 81 32-119 157-246 (278)
44 1w63_A Adapter-related protein 72.7 16 0.00055 41.2 10.9 124 56-204 271-396 (618)
45 4fdd_A Transportin-1; heat rep 71.7 66 0.0022 37.1 15.7 65 68-137 407-471 (852)
46 1wgs_A MYST histone acetyltran 70.8 3.7 0.00013 39.0 4.3 37 711-748 13-53 (133)
47 1qgr_A Protein (importin beta 69.3 35 0.0012 38.6 12.5 107 69-186 374-480 (876)
48 2x1g_F Cadmus; transport prote 69.2 1.8E+02 0.0061 34.1 20.1 39 74-116 706-745 (971)
49 2qqr_A JMJC domain-containing 67.6 9.1 0.00031 36.0 6.1 54 708-765 61-114 (118)
50 2eko_A Histone acetyltransfera 66.9 8.1 0.00028 34.5 5.4 53 709-769 8-66 (87)
51 1b3u_A Protein (protein phosph 66.6 29 0.001 37.0 10.7 119 68-203 171-291 (588)
52 3bdl_A Staphylococcal nuclease 66.1 6.5 0.00022 44.6 5.9 45 711-757 412-457 (570)
53 4ffb_C Protein STU2; tubulin f 65.7 10 0.00034 38.0 6.6 140 69-221 63-207 (278)
54 1w63_A Adapter-related protein 64.9 57 0.0019 36.8 13.2 24 68-91 320-343 (618)
55 2qk2_A LP04448P; mini spindles 64.4 39 0.0013 32.7 10.3 138 69-224 23-160 (242)
56 2xdp_A Lysine-specific demethy 63.5 9 0.00031 36.3 5.3 41 709-751 63-103 (123)
57 1b3u_A Protein (protein phosph 63.3 28 0.00094 37.2 9.7 27 69-95 410-436 (588)
58 4b8j_A Importin subunit alpha- 62.9 68 0.0023 34.5 12.8 23 68-90 124-147 (528)
59 3m1i_C Exportin-1; heat repeat 62.6 20 0.00068 42.8 9.4 37 56-94 537-573 (1049)
60 2lcc_A AT-rich interactive dom 62.6 5.4 0.00018 34.6 3.4 38 711-748 6-47 (76)
61 3tj1_A RNA polymerase I-specif 61.2 66 0.0023 37.8 13.0 145 24-204 108-261 (649)
62 3ibv_A Exportin-T; karyopherin 59.2 65 0.0022 39.0 12.9 106 55-165 531-657 (980)
63 1xqr_A HSPBP1 protein; armadil 59.0 89 0.003 32.4 12.4 112 11-137 27-154 (296)
64 2f5k_A MORF-related gene 15 is 58.2 12 0.0004 34.4 4.9 38 709-748 21-60 (102)
65 2ro0_A Histone acetyltransfera 57.3 20 0.00068 32.2 6.2 38 711-750 24-63 (92)
66 3u0r_A Apoptosis inhibitor 5; 56.9 1.1E+02 0.0039 34.9 13.5 180 5-202 169-353 (507)
67 1ibr_B P95, importin beta-1 su 56.8 74 0.0025 32.7 11.3 124 70-203 268-418 (462)
68 2x1g_F Cadmus; transport prote 56.5 65 0.0022 37.7 12.1 84 151-238 501-588 (971)
69 2x19_B Importin-13; nuclear tr 56.3 96 0.0033 36.0 13.4 166 83-254 745-931 (963)
70 2qqr_A JMJC domain-containing 54.9 11 0.00037 35.5 4.2 42 710-753 5-46 (118)
71 1wa5_C Importin alpha RE-expor 52.4 2.2E+02 0.0076 33.5 15.8 56 74-138 471-526 (960)
72 3ltm_A Alpha-REP4; protein eng 52.0 1.4E+02 0.005 27.6 11.6 128 68-238 57-185 (211)
73 2lcd_A AT-rich interactive dom 56.9 3.1 0.00011 39.1 0.0 49 706-756 52-100 (118)
74 2vgl_B AP-2 complex subunit be 48.9 23 0.00079 39.6 6.5 33 59-93 353-385 (591)
75 4b8j_A Importin subunit alpha- 48.9 2.8E+02 0.0095 29.7 14.9 30 59-90 244-273 (528)
76 2vgl_B AP-2 complex subunit be 48.4 33 0.0011 38.3 7.7 117 68-202 246-362 (591)
77 2eqm_A PHD finger protein 20-l 48.0 57 0.002 28.8 7.6 51 712-763 21-74 (88)
78 2x19_B Importin-13; nuclear tr 46.3 2.9E+02 0.0098 32.1 15.2 18 210-227 790-807 (963)
79 2bud_A Males-absent on the fir 45.4 46 0.0016 30.1 6.6 48 714-769 18-70 (92)
80 3tj1_A RNA polymerase I-specif 44.7 79 0.0027 37.2 10.1 108 81-202 354-468 (649)
81 4h7y_A Dual specificity protei 44.0 1.4E+02 0.0047 29.6 10.2 99 95-205 27-141 (161)
82 1wa5_B Importin alpha subunit; 43.8 1.3E+02 0.0046 32.3 11.3 22 69-90 307-328 (530)
83 2xdp_A Lysine-specific demethy 43.5 6.6 0.00023 37.2 0.9 41 710-752 6-46 (123)
84 2vgl_A Adaptor protein complex 43.5 1.1E+02 0.0037 34.8 10.9 115 69-204 299-415 (621)
85 1vsy_4 Proteasome activator BL 42.7 2.5E+02 0.0086 33.5 14.2 116 78-203 399-564 (799)
86 1oyz_A Hypothetical protein YI 42.6 2.5E+02 0.0084 27.3 13.3 22 68-89 30-51 (280)
87 3s6n_F Small nuclear ribonucle 41.9 65 0.0022 28.1 6.9 59 710-769 12-77 (86)
88 3bu8_A Telomeric repeat-bindin 41.8 44 0.0015 34.7 6.6 47 54-100 35-81 (235)
89 3sd4_A PHD finger protein 20; 41.4 56 0.0019 27.3 6.2 36 712-748 14-49 (69)
90 1y96_A Gemin6, SIP2, GEM-assoc 40.8 24 0.00081 31.6 3.9 31 710-741 13-43 (86)
91 2qk1_A Protein STU2; STU2P, XM 40.5 1.9E+02 0.0066 28.8 11.1 143 69-225 24-174 (249)
92 3dlm_A Histone-lysine N-methyl 40.1 33 0.0011 35.2 5.4 45 709-754 7-53 (213)
93 1wa5_B Importin alpha subunit; 36.1 78 0.0027 34.2 7.9 124 68-203 222-351 (530)
94 3ask_A E3 ubiquitin-protein li 35.7 49 0.0017 34.2 5.9 49 713-761 5-63 (226)
95 1n9r_A SMF, small nuclear ribo 35.5 33 0.0011 30.5 4.0 58 708-765 25-89 (93)
96 2jdq_A Importin alpha-1 subuni 33.4 1.8E+02 0.0063 29.7 9.9 119 68-203 71-202 (450)
97 3tpo_A Importin subunit alpha- 33.1 5.1E+02 0.017 28.2 18.1 99 28-137 90-191 (529)
98 1i4k_A Putative snRNP SM-like 32.9 41 0.0014 28.2 4.1 56 710-766 10-72 (77)
99 3ul1_B Importin subunit alpha- 31.7 1.1E+02 0.0038 33.4 8.3 23 68-90 323-345 (510)
100 2jdq_A Importin alpha-1 subuni 31.6 1.3E+02 0.0044 30.9 8.4 124 69-204 157-287 (450)
101 4hxt_A De novo protein OR329; 30.6 97 0.0033 28.9 6.7 150 68-233 51-210 (252)
102 1ldd_A APC2WHB, anaphase promo 30.4 30 0.001 30.1 2.8 29 85-113 28-60 (74)
103 4db6_A Armadillo repeat protei 29.4 2E+02 0.0067 26.4 8.5 23 68-90 19-41 (210)
104 3tpo_A Importin subunit alpha- 29.2 1.6E+02 0.0053 32.2 8.9 56 33-90 224-280 (529)
105 2vgl_A Adaptor protein complex 27.4 3.2E+02 0.011 31.1 11.3 133 69-224 82-218 (621)
106 4db8_A Armadillo-repeat protei 26.8 4E+02 0.014 25.0 11.8 22 68-89 103-124 (252)
107 3m1i_C Exportin-1; heat repeat 26.2 1.4E+02 0.0048 35.6 8.5 41 74-116 247-290 (1049)
108 1ljo_A Archaeal SM-like protei 26.0 64 0.0022 27.2 4.1 56 710-765 11-73 (77)
109 2fhd_A RAD9 homolog, DNA repai 25.9 1.3E+02 0.0046 29.4 6.7 44 711-754 6-54 (153)
110 1h64_1 SnRNP SM-like protein; 25.4 61 0.0021 27.1 3.8 55 710-765 10-71 (75)
111 2of3_A ZYG-9; multifunctional 25.4 5.9E+02 0.02 26.5 12.7 75 156-231 168-245 (266)
112 1mgq_A SM-like protein; LSM, R 25.4 57 0.002 28.0 3.7 40 709-749 20-62 (83)
113 4emk_B U6 snRNA-associated SM- 25.2 62 0.0021 27.2 3.8 40 710-750 10-52 (75)
114 1i8f_A Putative snRNP SM-like 24.7 49 0.0017 28.3 3.1 55 710-765 17-77 (81)
115 2l7y_A Putative endo-beta-N-ac 23.8 53 0.0018 30.0 3.3 51 717-769 9-59 (98)
116 4hat_C Exportin-1; heat repeat 22.9 4E+02 0.014 32.5 11.6 195 29-250 774-997 (1023)
117 4emh_A Probable U6 snRNA-assoc 22.6 3E+02 0.01 25.0 8.1 61 708-769 20-88 (105)
118 3mp6_A MBP, SGF29, maltose-bin 22.3 86 0.003 34.4 5.3 37 713-750 460-496 (522)
119 4emg_A Probable U6 snRNA-assoc 22.1 74 0.0025 28.1 3.9 31 709-740 14-44 (93)
120 1d3b_B Protein (small nuclear 21.6 87 0.003 27.1 4.2 33 707-740 7-39 (91)
121 1th7_A SnRNP-2, small nuclear 21.5 72 0.0025 27.2 3.6 55 710-765 15-76 (81)
122 3s51_A Protein FACI, fanconi a 21.2 2.8E+02 0.0095 35.3 9.8 112 82-206 174-297 (1308)
123 4db6_A Armadillo repeat protei 21.2 3.4E+02 0.011 24.8 8.4 105 68-186 61-168 (210)
124 3m9q_A Protein MALE-specific l 20.7 92 0.0032 28.5 4.2 37 711-747 20-66 (101)
125 4gmo_A Putative uncharacterize 20.7 9.8E+02 0.033 27.3 15.0 69 71-139 492-570 (684)
126 3ul1_B Importin subunit alpha- 20.4 8.3E+02 0.029 26.4 18.6 62 69-137 108-172 (510)
127 3h8z_A FragIle X mental retard 20.3 1.8E+02 0.0062 27.5 6.3 33 714-749 5-37 (128)
128 1vsy_4 Proteasome activator BL 20.2 2.5E+02 0.0084 33.6 8.8 17 99-115 226-242 (799)
129 3bw1_A SMX4 protein, U6 snRNA- 20.2 81 0.0028 27.9 3.7 31 709-740 15-45 (96)
130 3l6a_A Eukaryotic translation 20.0 2E+02 0.0068 31.1 7.4 73 9-94 181-253 (364)
131 3a6p_A Exportin-5; exportin-5, 20.0 2.8E+02 0.0095 34.2 9.5 85 151-237 529-628 (1204)
No 1
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=97.04 E-value=0.0011 Score=56.79 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=40.1
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeecC
Q 003359 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (827)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L~ 757 (827)
.||-+|.--| .|..||+|+|++.+.. +...|.|+||..|.|.+.
T Consensus 8 ~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~etvk~~ 51 (67)
T 3p8d_A 8 QINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (67)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred ccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceEEEeHH
Confidence 4899999999 9999999999999997 679999999999988764
No 2
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.02 E-value=0.001 Score=57.78 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=42.5
Q ss_pred ccccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeecCCccEEEe
Q 003359 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELI 764 (827)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L~~Ek~e~l 764 (827)
..--||.+|.-.|. |+.||.|+|++.+.. +...|.|+||..|.|... .++-+
T Consensus 8 ~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dyn~e~v~~~--~lrpl 59 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDGVIRCLKRM--HIKAM 59 (74)
T ss_dssp CCCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTSCEEEECGG--GEECC
T ss_pred CCCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecCCeEEecHH--HCeeC
Confidence 34458999999999 999999999999975 789999999988877543 44443
No 3
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=96.98 E-value=0.0014 Score=53.82 Aligned_cols=46 Identities=24% Similarity=0.494 Sum_probs=41.8
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CCeeeeecCC
Q 003359 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKK 758 (827)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDD-GD~E~L~L~~ 758 (827)
+|..|...|..|+.||.|+|.+.++..+...|.|.| |..|.+.+..
T Consensus 6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~ 52 (59)
T 1mhn_A 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD 52 (59)
T ss_dssp TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHH
Confidence 789999999999999999999999877899999998 9999887753
No 4
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=96.96 E-value=0.0016 Score=55.52 Aligned_cols=44 Identities=27% Similarity=0.444 Sum_probs=40.5
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeee
Q 003359 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILN 755 (827)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~ 755 (827)
.||-.|.--||+|+.||+++|++++...--..|.|-||.+|.|.
T Consensus 11 ~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e~L~ 54 (66)
T 2l8d_A 11 ADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTELALK 54 (66)
T ss_dssp CSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEEeec
Confidence 38889999999999999999999999889999999999888774
No 5
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.92 E-value=0.0018 Score=55.32 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=40.7
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeee
Q 003359 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILN 755 (827)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~ 755 (827)
.||-.|.-.||.|+.||+++|++++...--..|.|-||.+|.|.
T Consensus 14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e~L~ 57 (68)
T 2dig_A 14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELELK 57 (68)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEEEec
Confidence 38999999999999999999999999888999999999888774
No 6
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=96.92 E-value=0.00097 Score=62.82 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=39.7
Q ss_pred ccccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeee
Q 003359 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILN 755 (827)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~ 755 (827)
+.+++|.||-..|+++.-||.|+|+.+ ...++.+|.+|||++..|.
T Consensus 3 ~~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~~v~ 48 (123)
T 2g3r_A 3 MNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVL 48 (123)
T ss_dssp --CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred CccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCeeEee
Confidence 678999999999998778999999995 6678999999999998764
No 7
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.84 E-value=0.002 Score=53.77 Aligned_cols=48 Identities=23% Similarity=0.410 Sum_probs=42.7
Q ss_pred ccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CCeeeeecCC
Q 003359 711 QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKK 758 (827)
Q Consensus 711 ~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDD-GD~E~L~L~~ 758 (827)
--+|..|...|..|..||.++|.+.++..+...|.|.| |..|.+.+..
T Consensus 9 ~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~ 57 (64)
T 4a4f_A 9 WKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLN 57 (64)
T ss_dssp CCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHH
Confidence 34899999999999999999999999988899999987 8899887653
No 8
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.83 E-value=0.002 Score=57.50 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=41.1
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeecC
Q 003359 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (827)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L~ 757 (827)
.=.||-+|.--| .|..||+|+|++++.. +...|.|+||..+.|...
T Consensus 21 ~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~etvk~~ 66 (85)
T 3qii_A 21 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 66 (85)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred ccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeEEecHH
Confidence 445999999999 9999999999999996 689999999999988654
No 9
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=96.78 E-value=0.0025 Score=51.22 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=39.3
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CCeeeeecCC
Q 003359 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKK 758 (827)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDD-GD~E~L~L~~ 758 (827)
+|..|...|..|+.||.|+|.+.++..+...|.|.| |..|.+.+..
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~ 50 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSN 50 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHH
Confidence 688999999999999999999999877889999987 9999887753
No 10
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.77 E-value=0.0025 Score=56.91 Aligned_cols=48 Identities=23% Similarity=0.440 Sum_probs=43.0
Q ss_pred ccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CCeeeeecCC
Q 003359 711 QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKK 758 (827)
Q Consensus 711 ~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDD-GD~E~L~L~~ 758 (827)
--||..|...|..|+.||.|+|.+.++..+...|.|.| |..|.|.+..
T Consensus 11 ~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~ 59 (88)
T 1g5v_A 11 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD 59 (88)
T ss_dssp CCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGG
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHH
Confidence 34899999999999999999999999877899999986 8899888764
No 11
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.27 E-value=0.00069 Score=59.95 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=38.1
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeecC
Q 003359 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (827)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L~ 757 (827)
+|.+|.-.|. |+.||.|+|++.+.. ++..|.|+||..|.|.+.
T Consensus 9 vGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E~V~~s 51 (81)
T 2ldm_A 9 INEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (81)
Confidence 7999999999 999999999999864 578999999999988765
No 12
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=96.26 E-value=0.0053 Score=59.94 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=41.3
Q ss_pred ccccccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeec
Q 003359 707 ALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNL 756 (827)
Q Consensus 707 ~~ge~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L 756 (827)
..|..+||.||--.|.+++-||.|+|+.+ ....+.+|.+|||.+..|..
T Consensus 5 ~~~~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k~v~~ 53 (156)
T 1ssf_A 5 SSGNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVLG 53 (156)
T ss_dssp ---CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEEEEET
T ss_pred CCCcchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCeeEeec
Confidence 45778999999999999999999999997 55678999999999988764
No 13
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=96.20 E-value=0.0088 Score=51.83 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=45.9
Q ss_pred ccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CCeeeeecCCccEEEecC
Q 003359 711 QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKKERWELIKG 766 (827)
Q Consensus 711 ~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDD-GD~E~L~L~~Ek~e~l~~ 766 (827)
--+|..|-..|..|+.||.++|+..+...+...|.|-| |..|.+.+. .++.+..
T Consensus 10 ~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~--~Lr~l~~ 64 (78)
T 2d9t_A 10 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS--NIKPVQT 64 (78)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG--GEEECCC
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHH--HeEeCCH
Confidence 45899999999999999999999999877889999987 999998875 4555544
No 14
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=96.14 E-value=0.011 Score=51.40 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=41.4
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CCeeeeecC
Q 003359 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLK 757 (827)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDD-GD~E~L~L~ 757 (827)
-+|..|-..|..|+.||.|+|.+.+...+...|.|-| |..|.+.+.
T Consensus 19 kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~ 65 (77)
T 3pnw_C 19 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS 65 (77)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGG
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHH
Confidence 4899999999999999999999999877889999987 999988765
No 15
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=95.93 E-value=0.016 Score=49.66 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=41.5
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeecC
Q 003359 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (827)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L~ 757 (827)
-+|..|..-| -|..||.|+|+..|...+...|.|.||.+-|+...
T Consensus 15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~k 59 (66)
T 2eqj_A 15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWK 59 (66)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEee
Confidence 3899999999 79999999999999999999999999999988654
No 16
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=95.01 E-value=0.053 Score=45.37 Aligned_cols=44 Identities=18% Similarity=0.421 Sum_probs=39.8
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeecC
Q 003359 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (827)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L~ 757 (827)
+|..|-+-|- |..||.|+|+..|....+..|++.||.+-|+.+.
T Consensus 6 ~GedVLarws-DG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~k 49 (58)
T 4hcz_A 6 EGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 49 (58)
T ss_dssp TTCEEEEECT-TSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGG
T ss_pred cCCEEEEEec-CCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhH
Confidence 6888999998 5889999999999998899999999999988764
No 17
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.71 E-value=0.12 Score=46.22 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=44.9
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeecCCccEEEec
Q 003359 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIK 765 (827)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L~~Ek~e~l~ 765 (827)
+|.-|.+..++|+.||.|.|..-++.++-|.+.||=|.++.+...+ .+-|+
T Consensus 24 ~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~~--LR~L~ 74 (85)
T 2eqk_A 24 NDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVDC--LRKLE 74 (85)
T ss_dssp SSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEEEEETTT--EEECC
T ss_pred CCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEEEEEccc--cccCC
Confidence 7899999999999999999999999999999999999999998653 44443
No 18
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=93.36 E-value=0.11 Score=45.58 Aligned_cols=46 Identities=17% Similarity=0.386 Sum_probs=41.0
Q ss_pred ccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeecC
Q 003359 711 QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (827)
Q Consensus 711 ~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L~ 757 (827)
=-+|..|=+-|- |..||-|+|+..+....+..|.|+||.+-|....
T Consensus 27 f~eGeDVLarws-DGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~k 72 (79)
T 2m0o_A 27 LWEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 72 (79)
T ss_dssp CCTTCEEEBCCT-TSCCCEEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred eccCCEEEEEec-CCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEee
Confidence 347888999998 7889999999999999999999999999988654
No 19
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=92.35 E-value=0.27 Score=43.11 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=38.2
Q ss_pred ccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcc-CCCeeeeecC
Q 003359 711 QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYA-DGDEEILNLK 757 (827)
Q Consensus 711 ~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YD-DGD~E~L~L~ 757 (827)
--+|.-+-+.|+.|+.||.|+|.+..+ .+.-.|.|- =|..|.+.+.
T Consensus 28 ~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~ 74 (94)
T 3fdr_A 28 VHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLK 74 (94)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGG
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHH
Confidence 358999999999999999999999975 456677775 5999988765
No 20
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=90.78 E-value=0.39 Score=41.43 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=36.6
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeecC
Q 003359 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (827)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L~ 757 (827)
-+|..|=+-|- |..||-|+|+. ..+.+..|+|+|.-+.|+.+.
T Consensus 17 ~~geDVL~rw~-DG~fYLGtIVd--~~~~~ClV~FeD~S~~Wv~~k 59 (69)
T 2xk0_A 17 ALQEDVFIKCN-DGRFYLGTIID--QTSDQYLIRFDDQSEQWCEPD 59 (69)
T ss_dssp CTTCEEEEECT-TSCEEEEEEEE--ECSSCEEEEETTCCEEEECTT
T ss_pred ccCCeEEEEec-CCCEEEEEEEe--cCCceEEEEecCCcceeeeHH
Confidence 47999999998 58899999965 447889999999999988765
No 21
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=90.56 E-value=4.7 Score=39.25 Aligned_cols=151 Identities=9% Similarity=0.147 Sum_probs=87.8
Q ss_pred hHHHHHhhhhhhhc-cCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHh
Q 003359 57 LLPTMKGLITNDLL-RRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTV 135 (827)
Q Consensus 57 L~pl~k~LVs~~LL-kHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsL 135 (827)
+..++..|. .+| +.+|..||..++-||..|.+-..++ | ..++..|+..++..| .|+...--......|.++
T Consensus 54 ~~~i~~~L~--~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~-~~~~~~ilp~ll~~l---~d~~~~vr~~a~~aL~~~ 125 (242)
T 2qk2_A 54 YGALVSALK--KVITKDSNVVLVAMAGKCLALLAKGLAKR--F-SNYASACVPSLLEKF---KEKKPNVVTALREAIDAI 125 (242)
T ss_dssp CHHHHHHHH--HHHHHCSCHHHHHHHHHHHHHHHHHHGGG--G-HHHHHHHHHHHHHGG---GCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHhccCCCHHHHHHHHHHHHHHHHHHhhh--H-HHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHH
Confidence 334444443 245 4788889999999999999876552 2 345666666666655 455544444556666666
Q ss_pred hhhcceeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC--CCcHHHHHHHHHHhhccCCCCChhh
Q 003359 136 AKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE--DVSWDLLRILLASVRKENQDVSPTS 213 (827)
Q Consensus 136 AeVKS~VLmlDLe~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE--~VP~eLLDvIL~~ll~~~ks~~PaA 213 (827)
... +. +..++..++..+.... ..|......+|..++.... .+....+..|+..+..--....+.-
T Consensus 126 ~~~--------~~----~~~ll~~l~~~l~~~~-~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~V 192 (242)
T 2qk2_A 126 YAS--------TS----LEAQQESIVESLSNKN-PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTV 192 (242)
T ss_dssp HTT--------SC----HHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHc--------CC----HHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHH
Confidence 542 12 2344455555555544 4788888888888887753 3444445555544443223444554
Q ss_pred HHHHHHHHhhchHHH
Q 003359 214 WKLGEKVFTKCAAKL 228 (827)
Q Consensus 214 y~LA~~VI~~CadKL 228 (827)
+.-|...+......+
T Consensus 193 R~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 193 RDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 555544444433333
No 22
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=90.53 E-value=0.41 Score=46.78 Aligned_cols=50 Identities=22% Similarity=0.466 Sum_probs=40.3
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CCeeeeecCCccEEEec
Q 003359 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKKERWELIK 765 (827)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDD-GD~E~L~L~~Ek~e~l~ 765 (827)
-+|..|-+.|..|+.||.|+|+.... ..-.|.|-| |..+.+.+. .++.+.
T Consensus 53 ~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~--~l~~l~ 103 (218)
T 2wac_A 53 KRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTN--RLAALP 103 (218)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGG--GEEECC
T ss_pred CcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchH--HcccCC
Confidence 38999999999999999999999987 677888854 999988754 344443
No 23
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.12 E-value=0.69 Score=39.77 Aligned_cols=46 Identities=17% Similarity=0.386 Sum_probs=40.7
Q ss_pred ccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeecC
Q 003359 711 QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (827)
Q Consensus 711 ~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L~ 757 (827)
=-+|..|=.-|- |..||.|+|+..|.......|.|.|+.+-|+...
T Consensus 10 f~eGqdVLarWs-DGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~k 55 (68)
T 2e5p_A 10 LWEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 55 (68)
T ss_dssp CCTTCEEEEECT-TSSEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred cccCCEEEEEec-CCcEEEeEEEEEecCCcEEEEEEccCCeeeeeee
Confidence 347889999998 6889999999999999999999999999888654
No 24
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=90.01 E-value=0.33 Score=43.79 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=37.9
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcc-CCCeeeeecC
Q 003359 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYA-DGDEEILNLK 757 (827)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YD-DGD~E~L~L~ 757 (827)
.+|.-|-+.|..|+.||.|+|+..++. +.-.|.|- =|..|.+.+.
T Consensus 34 ~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~ 79 (110)
T 2diq_A 34 HVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLK 79 (110)
T ss_dssp CTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGG
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehH
Confidence 489999999999999999999999874 55667775 5999988765
No 25
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.20 E-value=0.74 Score=39.09 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=40.2
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeecC
Q 003359 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (827)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L~ 757 (827)
-+|..|=.-|- |..||.|+|+..|.......|.|.|+-+-|+...
T Consensus 9 ~eGqdVLarWs-DGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~k 53 (63)
T 2e5q_A 9 TEGQYVLCRWT-DGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWK 53 (63)
T ss_dssp CTTCEEEEECT-TSCEEEEEECCCCSTTSEEEEEETTSCEEEEEGG
T ss_pred ecCCEEEEEec-CCCEEEEEEEEEecCCCEEEEEEccCceeEEEee
Confidence 37889999998 7889999999999999999999999999888654
No 26
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=87.57 E-value=4.7 Score=45.49 Aligned_cols=162 Identities=11% Similarity=0.105 Sum_probs=81.0
Q ss_pred hccCCC--cCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhccc--------CCCC-CcchHHHHHHHHHhhh
Q 003359 69 LLRRSD--MDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENL--------SHAS-GRYYMKALSILDTVAK 137 (827)
Q Consensus 69 LLkHkD--kdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~L--------aD~s-sp~F~q~~yLLEsLAe 137 (827)
+|.+.| ..||..++.+|..|.....++ ....+..++..++..|... .+.+ .....-+..+++.|..
T Consensus 506 ~l~~~d~~~~vr~~a~~al~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 582 (861)
T 2bpt_A 506 AANRIDNEFNARASAFSALTTMVEYATDT---VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAA 582 (861)
T ss_dssp HHTCSCCGGGHHHHHHHHHHHHHHHCCGG---GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCcchHHHHHHHHHHHHHHHHcchh---hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHH
Confidence 455555 689999999999999875443 1234455555555555432 1111 1222223344444443
Q ss_pred hcceeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc----CCCcHHHHHHHHHHhhccCCCCChhh
Q 003359 138 VRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES----EDVSWDLLRILLASVRKENQDVSPTS 213 (827)
Q Consensus 138 VKS~VLmlDLe~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEs----E~VP~eLLDvIL~~ll~~~ks~~PaA 213 (827)
+=..+ .-.....+..++..++..++...+..|.......+..++.-. ...-..++..|+..+...+......|
T Consensus 583 l~~~~---~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a 659 (861)
T 2bpt_A 583 VIRKS---PSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA 659 (861)
T ss_dssp HHHHC---GGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHh---hhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 31110 012234555666666666655433134443333333333322 11223466666666633333333445
Q ss_pred HHHHHHHHhhchHHHHHHHHHHH
Q 003359 214 WKLGEKVFTKCAAKLKTNLKEAV 236 (827)
Q Consensus 214 y~LA~~VI~~CadKLqp~I~q~l 236 (827)
..+...++..+...+.+|+..++
T Consensus 660 ~~~l~~l~~~~~~~~~~~~~~l~ 682 (861)
T 2bpt_A 660 VGFIADISNSLEEDFRRYSDAMM 682 (861)
T ss_dssp HHHHHHHHHHTGGGGHHHHHHHH
T ss_pred HHHHHHHHHHhchhccchHHHHH
Confidence 55556667777767776665554
No 27
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=85.50 E-value=18 Score=43.47 Aligned_cols=117 Identities=11% Similarity=0.111 Sum_probs=68.0
Q ss_pred hccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccCC
Q 003359 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (827)
Q Consensus 69 LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDLe 148 (827)
.|.+.+..||..++.||..|...+.+ .++..|+..++..| .|++..- +......|+.+-. ++.
T Consensus 56 ~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~~~i~~~Ll~~l---~d~~~~v---R~~a~~~L~~i~~-----~l~ 118 (1230)
T 1u6g_C 56 LLEDKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNM---LSDKEQL---RDISSIGLKTVIG-----ELP 118 (1230)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHT---TCSSSHH---HHHHHHHHHHHHH-----HCC
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHh---cCCcHHH---HHHHHHHHHHHHH-----hCC
Confidence 35689999999999999999975422 56777777777664 4544322 3333344443321 122
Q ss_pred --------chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-C-c--HHHHHHHHHHh
Q 003359 149 --------CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-V-S--WDLLRILLASV 202 (827)
Q Consensus 149 --------~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE~-V-P--~eLLDvIL~~l 202 (827)
......+++..++..+.+.....+......++..+++.... + | ..++..++..|
T Consensus 119 ~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L 184 (1230)
T 1u6g_C 119 PASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQL 184 (1230)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGG
T ss_pred CcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 12345566666666665323456767777778888764322 2 2 34444444444
No 28
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=85.38 E-value=6.6 Score=47.26 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=43.1
Q ss_pred ccCCCcCchhhhhHHHHHHhhhcCCC---CCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhh
Q 003359 70 LRRSDMDVRLSVTSCISEITRITAPD---SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV 138 (827)
Q Consensus 70 LkHkDkdVRayVAcCLADILRIyAPD---APYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeV 138 (827)
|.+.+..||..++-||..|.+.+.|+ ..+......+++.+++..|.. ++.+..+.+.|+.|.++
T Consensus 95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-----~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-----QEDVSVQLEALDIMADM 161 (1230)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-----CSCHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHH
Confidence 45677889999999999999998887 344445677777777776642 23345555666666554
No 29
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=85.35 E-value=1.2 Score=51.85 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=100.2
Q ss_pred hccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccCC
Q 003359 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (827)
Q Consensus 69 LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDLe 148 (827)
-|...|-|||+.+|.||..|. ..+++..|+..+-++|..|.| =+++=..-+-||..|-.... .+...
T Consensus 307 GL~D~DDDVRAVAAetLiPIA---------~p~~l~~LL~iLWd~L~~LDD-LSASTgSVMdLLAkL~s~p~--~a~~d- 373 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP---------ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENP--ELSIP- 373 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC---------CSSTHHHHHHHHHHHHHTCCS-CCTTHHHHHHHHHHHHHHCT--TCCCC-
T ss_pred hcCCcccHHHHHHHHHhhhhc---------chhhHHHHHHHHHHHhhhhcc-cchhhHHHHHHHHHHHcCCc--ccccC-
Confidence 345678999999999999988 236799999999999999966 45555555666666655542 11111
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCChhhHHHHHHHHhhchHHH
Q 003359 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKL 228 (827)
Q Consensus 149 ~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE~VP~eLLDvIL~~ll~~~ks~~PaAy~LA~~VI~~CadKL 228 (827)
..|+..||--|... -.+|+.+....|..++ -..++..|+++++=+. ...-..++.+|...-..=+
T Consensus 374 -p~LVPRL~PFLRHt-----ITSVR~AVL~TL~tfL------~~~~LRLIFQNILLE~---neeIl~lS~~VWk~r~~Ll 438 (800)
T 3oc3_A 374 -PERLKDIFPCFTSP-----VPEVRTSILNMVKNLS------EESIDFLVAEVVLIEE---KDEIREMAIKLLKKRRDLP 438 (800)
T ss_dssp -SGGGGGTGGGGTCS-----SHHHHHHHHHHTTTCC------CHHHHHHHHHHHHHCS---CHHHHHHHHHHHHTCSCCC
T ss_pred -hHHHHHHHhhhcCC-----cHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHH
Confidence 26666666544332 3568877777776666 6789999999987443 2445567777765111119
Q ss_pred HHHHHHHHHhcCCC
Q 003359 229 KTNLKEAVQSRGIA 242 (827)
Q Consensus 229 qp~I~q~l~S~Gi~ 242 (827)
++.|+.+++-.|++
T Consensus 439 ~~wi~L~MtPIGv~ 452 (800)
T 3oc3_A 439 KNLILHFMNVIGGS 452 (800)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHhcCcCCCc
Confidence 99999999999998
No 30
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=84.77 E-value=1.1 Score=43.30 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=35.3
Q ss_pred ccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcc-CCCeee
Q 003359 711 QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYA-DGDEEI 753 (827)
Q Consensus 711 ~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YD-DGD~E~ 753 (827)
--+|.-+-+.|+.|+.||.|+|....+.. ...|.|- =|..+.
T Consensus 48 ~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~ 90 (169)
T 3ntk_A 48 LKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAV 90 (169)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEE
T ss_pred CCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEE
Confidence 44899999999999999999999999854 6778885 488876
No 31
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=82.80 E-value=1.9 Score=44.28 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=43.0
Q ss_pred CccccccccCeEEEeeCCCC--ceEEEEEEEecCCC--CeEEEEccCCCeeeeecCC
Q 003359 706 PALNEQLVGSRIKVWWPMDE--TFYKGVVDNYDPIK--KKHRILYADGDEEILNLKK 758 (827)
Q Consensus 706 ~~~ge~lVG~RVkV~WP~D~--~wY~G~V~sYd~~t--kkH~V~YDDGD~E~L~L~~ 758 (827)
...+.-.||.||-..|.+.. .||.|.|..-.... .++.|.||||...++.+..
T Consensus 64 p~~~~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~Yv~~~~ 120 (213)
T 3dlm_A 64 PPADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSE 120 (213)
T ss_dssp CCGGGCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCEEEECGGG
T ss_pred CCccEEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCcceecCce
Confidence 44556669999999999764 79999999866644 3789999999999988764
No 32
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=82.74 E-value=2.1 Score=42.10 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=38.9
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEc-cCCCeeeeecCCccEEEec
Q 003359 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILY-ADGDEEILNLKKERWELIK 765 (827)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~Y-DDGD~E~L~L~~Ek~e~l~ 765 (827)
+|.-+-+.++.|+.||.|.|....+. +...|.| |=|..+.+.+. .++.+.
T Consensus 68 ~G~~c~a~~~~d~~wyRa~V~~~~~~-~~~~V~~vDyG~~~~v~~~--~l~~l~ 118 (201)
T 4b9w_A 68 IGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTD--QLQAIL 118 (201)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETTTCCEEEECGG--GEEECC
T ss_pred CCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEccCCEEEEEHH--HhccCh
Confidence 68889999999999999999998764 4566666 56999887654 455554
No 33
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=81.91 E-value=4.1 Score=46.99 Aligned_cols=157 Identities=9% Similarity=0.182 Sum_probs=88.3
Q ss_pred CCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccCCchHH
Q 003359 73 SDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKL 152 (827)
Q Consensus 73 kDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDLe~ddL 152 (827)
.+......+.-||.-|.....+. -...+.+..|+..++..+..|.|.+...+ .+++.|+.+-..+- ...-..
T Consensus 495 ~~~~~~~~~~~ai~~l~~~~~~~-~~~~~~~~~l~p~l~~~~~~l~d~~~~~~----~~~~~l~~i~~~~g---~~~~~~ 566 (852)
T 4fdd_A 495 YQHKNLLILYDAIGTLADSVGHH-LNKPEYIQMLMPPLIQKWNMLKDEDKDLF----PLLECLSSVATALQ---SGFLPY 566 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHHHGGG-GCCHHHHHHHHHHHHHHHHHSCTTCTTHH----HHHHHHHHHHHHHG---GGGHHH
T ss_pred hChHHHHHHHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHHHHhcccccHHHH----HHHHHHHHHHHHHh---HhHHHH
Confidence 33444455667777776554332 12245677788888887888877554332 46666655532221 122233
Q ss_pred HHHHHHHHHHHhhcC---------------C-chhHHHHHHHHHHHHhcccCC-C-----cHHHHHHHHHHhhccCCCCC
Q 003359 153 VVEMFQHFLKVIRSN---------------H-PHFVFAAMETIMTLVIDESED-V-----SWDLLRILLASVRKENQDVS 210 (827)
Q Consensus 153 I~eLFktFFdiVr~~---------------h-p~kV~~~M~dILs~VIeEsE~-V-----P~eLLDvIL~~ll~~~ks~~ 210 (827)
+..+|..++..++.. . ...+.....+.+..++...+. + ...++..|+..+-.......
T Consensus 567 ~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr 646 (852)
T 4fdd_A 567 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR 646 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHH
Confidence 333444333333321 1 233555555555555554321 1 13577878777754444445
Q ss_pred hhhHHHHHHHHhhchHHHHHHHHHHHH
Q 003359 211 PTSWKLGEKVFTKCAAKLKTNLKEAVQ 237 (827)
Q Consensus 211 PaAy~LA~~VI~~CadKLqp~I~q~l~ 237 (827)
-.|+.+-.+++..|...+.+|+.+++.
T Consensus 647 ~~a~~~l~~l~~~~~~~~~~~l~~~lp 673 (852)
T 4fdd_A 647 QSSFALLGDLTKACFQHVKPCIADFMP 673 (852)
T ss_dssp HHHHHHHHHHHHHCGGGTGGGHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567777788888999999998888764
No 34
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=81.39 E-value=8.4 Score=43.53 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=21.0
Q ss_pred hccCCCcCchhhhhHHHHHHhhhcCC
Q 003359 69 LLRRSDMDVRLSVTSCISEITRITAP 94 (827)
Q Consensus 69 LLkHkDkdVRayVAcCLADILRIyAP 94 (827)
+|.+.+..||..++.||..+...+.+
T Consensus 416 ~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 416 LMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 45677788999999999988888766
No 35
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=80.91 E-value=13 Score=43.83 Aligned_cols=53 Identities=25% Similarity=0.217 Sum_probs=34.8
Q ss_pred hhHHHHHhhhhhhhccCCCcCchhhhhHHHHHHhhhcC------CC------CCCCchHHHHHHHHH
Q 003359 56 ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITA------PD------SPYDDELMKEFFQLA 110 (827)
Q Consensus 56 SL~pl~k~LVs~~LLkHkDkdVRayVAcCLADILRIyA------PD------APYtDdqLKDIF~Lf 110 (827)
-+.+++..|++ .|.+.+.-||.++|.||..++.... |+ .||-..-|..+|.++
T Consensus 493 ~l~~~l~~l~~--~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll 557 (960)
T 1wa5_C 493 QLIELMPILAT--FLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI 557 (960)
T ss_dssp HHHHHHHHHHH--HTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHH
Confidence 45666666665 3456678899999999999988643 22 366655555555443
No 36
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=80.40 E-value=15 Score=41.45 Aligned_cols=154 Identities=5% Similarity=0.011 Sum_probs=78.7
Q ss_pred hccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcc-hHHHHHHHHHhhhhcceeeeccC
Q 003359 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRY-YMKALSILDTVAKVRSCLLMLDL 147 (827)
Q Consensus 69 LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~-F~q~~yLLEsLAeVKS~VLmlDL 147 (827)
+|.+.+..+|-.++.||..|.+-+.|+ .-...+..|+..++. .|.|+ ++. -....+.|.+++..-. -++
T Consensus 377 ~l~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~il~~l~~---~l~d~-~~~vr~~a~~~l~~l~~~~~----~~~ 446 (861)
T 2bpt_A 377 NITADNWRNREAAVMAFGSIMDGPDKV--QRTYYVHQALPSILN---LMNDQ-SLQVKETTAWCIGRIADSVA----ESI 446 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHH--HHHHHHHHHHHHHHH---GGGCS-CHHHHHHHHHHHHHHHHHHG----GGS
T ss_pred HcCCCChhHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHH---HcCCC-cHHHHHHHHHHHHHHHHHhh----hhc
Confidence 456788889988889999888543221 001234444444444 44554 332 2233455555554421 122
Q ss_pred CchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CC---cHHHHHHHHHHhhccC--CCCChhhHHHH
Q 003359 148 ECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DV---SWDLLRILLASVRKEN--QDVSPTSWKLG 217 (827)
Q Consensus 148 e~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE-----~V---P~eLLDvIL~~ll~~~--ks~~PaAy~LA 217 (827)
.....+..++..++..+.++ ..|.......+..+++... .+ -..++..|+..+...+ ....-.++...
T Consensus 447 ~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 447 DPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp CTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 23345666666666666543 5677666666666665432 12 1345555555554322 12222344444
Q ss_pred HHHHhhchHHHHHHHHH
Q 003359 218 EKVFTKCAAKLKTNLKE 234 (827)
Q Consensus 218 ~~VI~~CadKLqp~I~q 234 (827)
..++..+...+.+|+.+
T Consensus 525 ~~l~~~~~~~~~~~~~~ 541 (861)
T 2bpt_A 525 TTMVEYATDTVAETSAS 541 (861)
T ss_dssp HHHHHHCCGGGHHHHHH
T ss_pred HHHHHHcchhhHHHHHH
Confidence 45566555555554433
No 37
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=80.38 E-value=2.2 Score=42.75 Aligned_cols=44 Identities=16% Similarity=0.372 Sum_probs=36.5
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcc-CCCeeeeecC
Q 003359 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYA-DGDEEILNLK 757 (827)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YD-DGD~E~L~L~ 757 (827)
+|.-+-+.|+.|+.||.|.|....+. +...|.|= =|..+.+.+.
T Consensus 68 ~G~~c~a~~~~d~~WyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~ 112 (226)
T 4b9x_A 68 IGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTD 112 (226)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEECSS-SEEEEECTTTCCEEEEEGG
T ss_pred CCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEecCCEEEEEHH
Confidence 68889999999999999999998764 55677774 5999887654
No 38
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=79.27 E-value=7 Score=35.44 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=39.5
Q ss_pred ccCCccccCCCCccccccccCeEEEeeCCCCceEEEEEEEecCCC--CeEEEEccCCCe
Q 003359 695 LTAGKEMDSEAPALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIK--KKHRILYADGDE 751 (827)
Q Consensus 695 r~~g~e~~s~~~~~ge~lVG~RVkV~WP~D~~wY~G~V~sYd~~t--kkH~V~YDDGD~ 751 (827)
+++|+....+......-.||.+|-|++ +..||.++|....... .+..|.|.+=..
T Consensus 10 ~~~~~~~~~~~~~~~~~~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~Nk 66 (94)
T 2rnz_A 10 HSSGLVPRGSHMSVDDIIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNK 66 (94)
T ss_dssp SCCCSSCSSCSSCGGGCCTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCS
T ss_pred cccCCccCCCccccccccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCc
Confidence 355665555444445556999999997 8899999999977644 368888875443
No 39
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=78.91 E-value=2.7 Score=39.89 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=37.5
Q ss_pred cccCeEEEeeCCCC----ceEEEEEEEecCCCCeEEEEccCCC---eeeeecCCccEEEecC
Q 003359 712 LVGSRIKVWWPMDE----TFYKGVVDNYDPIKKKHRILYADGD---EEILNLKKERWELIKG 766 (827)
Q Consensus 712 lVG~RVkV~WP~D~----~wY~G~V~sYd~~tkkH~V~YDDGD---~E~L~L~~Ek~e~l~~ 766 (827)
.+|..|.|||..+. .||.|+|+.... ..|.|.|++=+ .|++. -++++.+-.
T Consensus 62 ~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg--~f~~V~y~~~~~~~~EiV~--~~rlR~~n~ 119 (128)
T 3h8z_A 62 TEGDEVEVYSRANEQEPCGWWLARVRMMKG--DFYVIEYAACDATYNEIVT--LERLRPVNP 119 (128)
T ss_dssp CTTCEEEEEECC---CCCEEEEEEEEEEET--TEEEEEETTC----CEEEC--GGGEEECCC
T ss_pred CCCCEEEEEecCCCCCcCccEEEEEEEeeC--CEEEEEEcCCCCCcceEEe--hhheEeCCC
Confidence 48999999999877 799999999984 68999998633 35554 456665543
No 40
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=78.71 E-value=16 Score=36.80 Aligned_cols=164 Identities=7% Similarity=0.102 Sum_probs=93.4
Q ss_pred HHHHHhhhhhhhc-cCCCcCchhhhhHHHHHHhhhcC-CCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHh
Q 003359 58 LPTMKGLITNDLL-RRSDMDVRLSVTSCISEITRITA-PDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTV 135 (827)
Q Consensus 58 ~pl~k~LVs~~LL-kHkDkdVRayVAcCLADILRIyA-PDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsL 135 (827)
..+...|. ..| +.+|..|+..++-||..|.+-.+ |. |.-.....|+-.++..| .|....--....+.|.+|
T Consensus 59 ~~~~~~L~--~~l~~D~n~~v~~~A~~al~~la~~l~~~~--f~~~y~~~llp~ll~~l---~dkk~~V~~aa~~al~~i 131 (249)
T 2qk1_A 59 SNLLGIYG--HIIQKDANIQAVALAAQSVELICDKLKTPG--FSKDYVSLVFTPLLDRT---KEKKPSVIEAIRKALLTI 131 (249)
T ss_dssp HHHHHHHH--HHHHHCSCHHHHHHHHHHHHHHHHHHCTTT--SCHHHHHHHHHHHHHGG---GCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHhccCCCHHHHHHHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHH
Confidence 34444442 245 67888889999999999998877 66 33234455555555554 454433334556777777
Q ss_pred hhhcceeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCC--------cHHHHHHHHHHhhccCC
Q 003359 136 AKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDV--------SWDLLRILLASVRKENQ 207 (827)
Q Consensus 136 AeVKS~VLmlDLe~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE~V--------P~eLLDvIL~~ll~~~k 207 (827)
.+.=.-+ +.--.-++|+..|| ....... ..|.......|..+++.+... +..++..|...+-..+.
T Consensus 132 ~~~~~~~-~~~~~l~~ll~~l~----~~l~~k~-~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~ 205 (249)
T 2qk1_A 132 CKYYDPL-ASSGRNEDMLKDIL----EHMKHKT-PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQP 205 (249)
T ss_dssp HHHSCTT-CTTCTTHHHHHHHH----HHTTCSS-HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSH
T ss_pred HHHcccc-ccCCcHHHHHHHHH----HHHcCCC-hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCH
Confidence 6641110 01000345565555 4344443 367778888888899888753 34455555554533333
Q ss_pred CCChhhHHHHHHHHhhchHH-HHHHHHH
Q 003359 208 DVSPTSWKLGEKVFTKCAAK-LKTNLKE 234 (827)
Q Consensus 208 s~~PaAy~LA~~VI~~CadK-Lqp~I~q 234 (827)
...-+|+.....++...+.+ |.|++..
T Consensus 206 ~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 206 AIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 44445555555555555554 7777766
No 41
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=75.69 E-value=8.9 Score=39.56 Aligned_cols=109 Identities=11% Similarity=0.143 Sum_probs=62.0
Q ss_pred HHHhhhhhhhccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCC-Ccc-hHHHHHHHHHhhh
Q 003359 60 TMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHAS-GRY-YMKALSILDTVAK 137 (827)
Q Consensus 60 l~k~LVs~~LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~s-sp~-F~q~~yLLEsLAe 137 (827)
+...|+. +|.+.+..| ..+|-||+.|.+...|+.-| .+++.+++..+. +.+ ++. -...+.+|..|.+
T Consensus 91 ik~~ll~--~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w-----~~ll~~L~~~l~---~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 91 VKNYVLQ--TLGTETYRP-SSASQCVAGIACAEIPVNQW-----PELIPQLVANVT---NPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HHHHHHH--HTTCCCSSS-CSHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHH---CTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HhCCCCchh-hHHHHHHHHHHHHhcccccc-----HHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHH
Confidence 3444443 466778889 88999999999998775434 245555555543 221 222 1123444444433
Q ss_pred h-cceeeeccCCchHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhc
Q 003359 138 V-RSCLLMLDLECDKLVVEMFQHFLKVIRSNH-PHFVFAAMETIMTLVID 185 (827)
Q Consensus 138 V-KS~VLmlDLe~ddLI~eLFktFFdiVr~~h-p~kV~~~M~dILs~VIe 185 (827)
- ..- + -...+..+|..|+..+.... ...|+......+..+++
T Consensus 160 ~~~~~-----~-~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 160 DIDPE-----Q-LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp HSCGG-----G-TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred hCCch-----h-hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 1 110 0 13445567777777766553 46677777777776654
No 42
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=75.39 E-value=3.4 Score=41.46 Aligned_cols=43 Identities=23% Similarity=0.406 Sum_probs=35.9
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CCeeeeec
Q 003359 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNL 756 (827)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDD-GD~E~L~L 756 (827)
-+|.-|-+.|. |+.||.|.|+...+. ..-.|.|-| |..+.+.+
T Consensus 67 ~~G~~c~a~~~-d~~wyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~ 110 (246)
T 2hqx_A 67 RRGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNREVLPS 110 (246)
T ss_dssp CTTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCEEEECG
T ss_pred CCCCEEEEEcC-CCCEEEEEEEEEcCC-CeEEEEEEeCCCeEEEeH
Confidence 38999999999 999999999999864 467788765 99998854
No 43
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=72.95 E-value=5.7 Score=39.84 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCcCchhhhhHHHHHHhhhcCCCC-----CCC----chH
Q 003359 32 INLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDS-----PYD----DEL 102 (827)
Q Consensus 32 LKRLkkL~~eLs~lDQ~~vdS~~~SL~pl~k~LVs~~LLkHkDkdVRayVAcCLADILRIyAPDA-----PYt----Ddq 102 (827)
...|.-|..+|......... ....+..+++.| ..+|.|.|.+||-.+.-||++|+|++-+.. +|- ..+
T Consensus 157 ~~~l~~l~~~l~~fg~~~~~-~k~~l~~i~~~l--~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~ 233 (278)
T 4ffb_C 157 AAAANCVYELMAAFGLTNVN-VQTFLPELLKHV--PQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQ 233 (278)
T ss_dssp HHHHHHHHHHHHHHTTTTCC-HHHHHHHHGGGH--HHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHH
T ss_pred HHHHHHHHHHHHHhCCCcCC-chhHHHHHHHHH--HHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHH
Confidence 33444555555554332222 111223344433 367999999999999999999999987653 342 246
Q ss_pred HHHHHHHHHHHhcccCC
Q 003359 103 MKEFFQLAVSAFENLSH 119 (827)
Q Consensus 103 LKDIF~LfV~qf~~LaD 119 (827)
+++|+.. |..+.+
T Consensus 234 ~k~le~~----f~k~~~ 246 (278)
T 4ffb_C 234 VKDLHKL----FAKVGD 246 (278)
T ss_dssp HHHHHHH----HSCCCC
T ss_pred HHHHHHH----HHhcCC
Confidence 6666554 455543
No 44
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=72.75 E-value=16 Score=41.24 Aligned_cols=124 Identities=10% Similarity=0.129 Sum_probs=67.4
Q ss_pred hhHHHHHhhhhh-hhccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcc-cCCCCCcchHHHHHHHH
Q 003359 56 ALLPTMKGLITN-DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFEN-LSHASGRYYMKALSILD 133 (827)
Q Consensus 56 SL~pl~k~LVs~-~LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~-LaD~ssp~F~q~~yLLE 133 (827)
.+..+...|..+ ..++|.+..|..-++-||..| .++ ..+.. ..+..|.. |.+. ++ .-++..|.
T Consensus 271 ~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~~-----~~l~~---~a~~~L~~~L~~~-d~--~vr~~aL~ 335 (618)
T 1w63_A 271 AMNDILAQVATNTETSKNVGNAILYETVLTIMDI----KSE-----SGLRV---LAINILGRFLLNN-DK--NIRYVALT 335 (618)
T ss_dssp TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CCC-----HHHHH---HHHHHHHHHHTCS-ST--TTHHHHHH
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CCC-----HHHHH---HHHHHHHHHHhCC-CC--chHHHHHH
Confidence 334444444432 346677778888888888764 121 22222 22222222 3332 22 23344566
Q ss_pred HhhhhcceeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhc
Q 003359 134 TVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRK 204 (827)
Q Consensus 134 sLAeVKS~VLmlDLe~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE~VP~eLLDvIL~~ll~ 204 (827)
+|..+-.. ...++...+..||.... +-+..|...-.++|..+.++.. + ..++..|+.++..
T Consensus 336 ~L~~i~~~-------~p~~~~~~~~~i~~~l~-d~d~~Ir~~alelL~~l~~~~n-v-~~iv~eL~~~l~~ 396 (618)
T 1w63_A 336 SLLKTVQT-------DHNAVQRHRSTIVDCLK-DLDVSIKRRAMELSFALVNGNN-I-RGMMKELLYFLDS 396 (618)
T ss_dssp HHHHHHHH-------HHHHHGGGHHHHHHGGG-SSCHHHHHHHHHHHHHHCCSSS-T-HHHHHHHHHHHHH
T ss_pred HHHHHHhh-------CHHHHHHHHHHHHHHcc-CCChhHHHHHHHHHHHHccccc-H-HHHHHHHHHHHHh
Confidence 66655321 12445555566666655 3446677778888888888643 3 5677777777764
No 45
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=71.66 E-value=66 Score=37.06 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=41.7
Q ss_pred hhccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhh
Q 003359 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAK 137 (827)
Q Consensus 68 ~LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAe 137 (827)
.+|.+.+..||..++-||..|...+.+.. ....+..++..++..+. |.+...-......|.+|++
T Consensus 407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~~~ll~~L~~~L~---d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 407 QCLSDKKALVRSITCWTLSRYAHWVVSQP--PDTYLKPLMTELLKRIL---DSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTHHHHHHSC--TTTTHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHH
Confidence 35688899999999999999988765532 23346667777766553 3332233334555555554
No 46
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=70.83 E-value=3.7 Score=39.03 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=29.9
Q ss_pred ccccCeEEEeeCCCCceEEEEEEEecC----CCCeEEEEccC
Q 003359 711 QLVGSRIKVWWPMDETFYKGVVDNYDP----IKKKHRILYAD 748 (827)
Q Consensus 711 ~lVG~RVkV~WP~D~~wY~G~V~sYd~----~tkkH~V~YDD 748 (827)
-.+|.+|.|||+ |..||.+.|..... ...++.|.|.+
T Consensus 13 ~~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~g 53 (133)
T 1wgs_A 13 VEIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVG 53 (133)
T ss_dssp CCTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTT
T ss_pred cCCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccC
Confidence 348999999998 78999999998663 23468888884
No 47
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=69.34 E-value=35 Score=38.56 Aligned_cols=107 Identities=9% Similarity=0.051 Sum_probs=61.8
Q ss_pred hccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccCC
Q 003359 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (827)
Q Consensus 69 LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDLe 148 (827)
+|.+.+..||-.++.||..|..-+.|+. -...+..++..++..| .|+....-......|.+++..-.- .+.
T Consensus 374 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~----~~~ 444 (876)
T 1qgr_A 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQ--LKPLVIQAMPTLIELM---KDPSVVVRDTAAWTVGRICELLPE----AAI 444 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHH--HHHHHHHHHHHHHHHH---TCSSHHHHHHHHHHHHHHHHHCGG----GTS
T ss_pred HccCCChHHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhCch----hcc
Confidence 4567888899988889988875443320 0134555666555554 455433344556677777665211 111
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcc
Q 003359 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186 (827)
Q Consensus 149 ~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeE 186 (827)
....+..++..++..+.++ ..|.......|..++..
T Consensus 445 ~~~~l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 445 NDVYLAPLLQCLIEGLSAE--PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp STTTHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence 2345666667777766542 56666555555556554
No 48
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=69.24 E-value=1.8e+02 Score=34.06 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=28.1
Q ss_pred CcCchhhhhHHHHHHhhhcCCC-CCCCchHHHHHHHHHHHHhcc
Q 003359 74 DMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFEN 116 (827)
Q Consensus 74 DkdVRayVAcCLADILRIyAPD-APYtDdqLKDIF~LfV~qf~~ 116 (827)
|.+|.-.++-|+..+++.|-.+ .|| |-.++.+++..|..
T Consensus 706 ~~~v~e~~~~~~~~~~~~~~~~~~p~----l~~~~~~l~~~~~~ 745 (971)
T 2x1g_F 706 EIDVLEAACSAMKHAITNLRSSFQPM----LQDLCLFIVASFQT 745 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC--CTH----HHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHhhhhhcccc----HHHHHHHHHHHHhc
Confidence 5567777777888888887666 566 77888888877764
No 49
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=67.60 E-value=9.1 Score=36.01 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=40.3
Q ss_pred cccccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeecCCccEEEec
Q 003359 708 LNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIK 765 (827)
Q Consensus 708 ~ge~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L~~Ek~e~l~ 765 (827)
.|.-..|..|+|-|++ ..-|.|+..++.. ....+|.++||-. +.+..+.+.-++
T Consensus 61 ~GpP~~G~~V~V~W~D-G~~y~a~f~g~~~-~~~Y~V~feDgs~--~~~kR~~iyt~~ 114 (118)
T 2qqr_A 61 FGPPAEGEVVQVRWTD-GQVYGAKFVASHP-IQMYQVEFEDGSQ--LVVKRDDVYTLD 114 (118)
T ss_dssp HCCCCTTCEEEEECTT-SCEEEEEEEEEEE-EEEEEEEETTSCE--EEECGGGEEETT
T ss_pred cCCCCCCCEEEEEcCC-CCEeeeEEeceeE-EEEEEEEECCCCE--EEEcHHHeeccc
Confidence 3677799999999995 4589999888775 3457788899984 556666665544
No 50
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.85 E-value=8.1 Score=34.47 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=39.0
Q ss_pred ccccccCeEEEeeC---CCCceEEEEEEEecCCC--CeEEEEccCCCeeeeecCCccE-EEecCCCC
Q 003359 709 NEQLVGSRIKVWWP---MDETFYKGVVDNYDPIK--KKHRILYADGDEEILNLKKERW-ELIKGGSS 769 (827)
Q Consensus 709 ge~lVG~RVkV~WP---~D~~wY~G~V~sYd~~t--kkH~V~YDDGD~E~L~L~~Ek~-e~l~~d~~ 769 (827)
..-.+|.+|.|+++ .+..||.++|....... .+..|.|.+=+. +| +||..+..
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~Nk--------RlDEWV~~~rl 66 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNR--------RLDEWVTHERL 66 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCS--------CCCEEECTTTB
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCc--------ccccccCHhHc
Confidence 45569999999997 58899999999988754 357888875433 22 56666555
No 51
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=66.63 E-value=29 Score=36.98 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=61.3
Q ss_pred hhccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccC
Q 003359 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (827)
Q Consensus 68 ~LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDL 147 (827)
.++.+.|..||..++.+|..|.+.+.++ ..+.+++.+|+..+ .|.+...-......|..++.. +
T Consensus 171 ~l~~d~~~~VR~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~---~d~~~~vr~~a~~~l~~l~~~--------~ 234 (588)
T 1b3u_A 171 NLCSDDTPMVRRAAASKLGEFAKVLELD-----NVKSEIIPMFSNLA---SDEQDSVRLLAVEACVNIAQL--------L 234 (588)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHTSCHH-----HHHHTHHHHHHHHH---TCSCHHHHTTHHHHHHHHHHH--------S
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhcHH-----hHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHh--------C
Confidence 3567889999999999999999875432 22344455544433 333211111223333333332 2
Q ss_pred CchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC--CCcHHHHHHHHHHhh
Q 003359 148 ECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE--DVSWDLLRILLASVR 203 (827)
Q Consensus 148 e~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE--~VP~eLLDvIL~~ll 203 (827)
+.+.+...++..+..... +....|+......|..+..-.. .+...++..++.-+.
T Consensus 235 ~~~~~~~~~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 291 (588)
T 1b3u_A 235 PQEDLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291 (588)
T ss_dssp CHHHHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhC
Confidence 333333334444444433 3345577777666666655321 223445555555443
No 52
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=66.14 E-value=6.5 Score=44.62 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=37.6
Q ss_pred ccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcc-CCCeeeeecC
Q 003359 711 QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYA-DGDEEILNLK 757 (827)
Q Consensus 711 ~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YD-DGD~E~L~L~ 757 (827)
--+|.-|-+.|. |+.||.|.|..+++ .+.-.|.|- -|..+.+.+.
T Consensus 412 ~~~G~~c~a~~~-d~~wyRa~I~~v~~-~~~~~V~fvDyGn~e~v~~~ 457 (570)
T 3bdl_A 412 PRRGEFCIAKFV-DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPST 457 (570)
T ss_dssp CCTTCEEEEECT-TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGG
T ss_pred CCcCCEEEEEEC-CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEEHH
Confidence 348999999999 99999999999997 466778886 4999987655
No 53
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=65.71 E-value=10 Score=38.04 Aligned_cols=140 Identities=10% Similarity=0.079 Sum_probs=64.0
Q ss_pred hccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHH-hc-ccCCCCCcchHHHHHHHHHhhhhcceeeecc
Q 003359 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSA-FE-NLSHASGRYYMKALSILDTVAKVRSCLLMLD 146 (827)
Q Consensus 69 LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~q-f~-~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlD 146 (827)
+|.-+|.-|...+.-||..++..+.+...... ...-+...|+.. +. .|+++....-...+..|-.+...-
T Consensus 63 ~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~------- 134 (278)
T 4ffb_C 63 YITDSNVVAQEQAIVALNSLIDAFASSSLKNA-HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD------- 134 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTCC---CCHH-HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-------
T ss_pred HhccchHHHHHHHHHHHHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-------
Confidence 44445555555566678888887776643321 222222333332 22 366654333333333333332211
Q ss_pred CCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc--CCCc-HHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q 003359 147 LECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES--EDVS-WDLLRILLASVRKENQDVSPTSWKLGEKVF 221 (827)
Q Consensus 147 Le~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEs--E~VP-~eLLDvIL~~ll~~~ks~~PaAy~LA~~VI 221 (827)
...+. ++..++.......| +|.......|..+|.+. ..++ ...+..|+..+.+--....+.-+.-|..++
T Consensus 135 ~~~~~----~~e~l~~~l~~Knp-kv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 135 TSITQ----SVELVIPFFEKKLP-KLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp SSSHH----HHHHHGGGGGCSCH-HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred CcHHH----HHHHHHHHHhccCH-HHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 01122 23333444444444 56666667778888884 3454 445665555443322334454444444443
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=64.88 E-value=57 Score=36.83 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=21.0
Q ss_pred hhccCCCcCchhhhhHHHHHHhhh
Q 003359 68 DLLRRSDMDVRLSVTSCISEITRI 91 (827)
Q Consensus 68 ~LLkHkDkdVRayVAcCLADILRI 91 (827)
.||.+.|..||..+-.+|..|.+.
T Consensus 320 ~~L~~~d~~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 320 RFLLNNDKNIRYVALTSLLKTVQT 343 (618)
T ss_dssp HHHTCSSTTTHHHHHHHHHHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHHhh
Confidence 368899999999888999999876
No 55
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=64.37 E-value=39 Score=32.74 Aligned_cols=138 Identities=9% Similarity=0.076 Sum_probs=88.3
Q ss_pred hccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccCC
Q 003359 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (827)
Q Consensus 69 LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDLe 148 (827)
.|..+|-.+|.-++-+|..++.-+ |. +....+.+|+..+...|. .|.+..-....+..|..|+.. +--+
T Consensus 23 ~l~s~~w~~R~~a~~~L~~l~~~~-~~--~~~~~~~~i~~~L~~~l~--kd~~~~V~~~a~~~l~~la~~----l~~~-- 91 (242)
T 2qk2_A 23 KLEEKKWTLRKESLEVLEKLLTDH-PK--LENGEYGALVSALKKVIT--KDSNVVLVAMAGKCLALLAKG----LAKR-- 91 (242)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHC-SS--BCCCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHH----HGGG--
T ss_pred hhccCCHHHHHHHHHHHHHHHccC-CC--CCCCCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHH----Hhhh--
Confidence 457889999999999999998863 33 223345677777766652 145444556667777777742 1111
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCChhhHHHHHHHHhhc
Q 003359 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKC 224 (827)
Q Consensus 149 ~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE~VP~eLLDvIL~~ll~~~ks~~PaAy~LA~~VI~~C 224 (827)
-...+..++..++....+. ...|+......|..++.... ...++..|+..+.. .+|..+.-+-..|..+
T Consensus 92 ~~~~~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~----~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS--LEAQQESIVESLSN----KNPSVKSETALFIARA 160 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcC----CChHHHHHHHHHHHHH
Confidence 2467777888888877653 45688888888888877543 24567777666642 3455555555555554
No 56
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=63.54 E-value=9 Score=36.28 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=33.5
Q ss_pred ccccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCe
Q 003359 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDE 751 (827)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~ 751 (827)
|.-..|..|+|-|+ |..-|.|...+.+.. ...+|.++||..
T Consensus 63 GpP~~G~~V~V~W~-DG~~y~a~f~g~~~~-~~YtV~FeDgs~ 103 (123)
T 2xdp_A 63 GPPAEGEVVQVKWP-DGKLYGAKYFGSNIA-HMYQVEFEDGSQ 103 (123)
T ss_dssp CCCCTTCEEEEECT-TSCEEEEEEEEEEEE-EEEEEECTTSCE
T ss_pred CCCCCCCEEEEEcC-CCCEEeEEEeeeeeE-EEEEEEECCCCe
Confidence 67779999999999 555899999988753 557888899974
No 57
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=63.34 E-value=28 Score=37.17 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=15.6
Q ss_pred hccCCCcCchhhhhHHHHHHhhhcCCC
Q 003359 69 LLRRSDMDVRLSVTSCISEITRITAPD 95 (827)
Q Consensus 69 LLkHkDkdVRayVAcCLADILRIyAPD 95 (827)
++.+.+-.||..++.||..|.+.+-++
T Consensus 410 ~~~d~~~~vr~~~~~~l~~l~~~~~~~ 436 (588)
T 1b3u_A 410 LAEDAKWRVRLAIIEYMPLLAGQLGVE 436 (588)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHCGG
T ss_pred HhcCCCchHHHHHHHHHHHHHHHcCHH
Confidence 445556666666666666666555443
No 58
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=62.88 E-value=68 Score=34.45 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=19.1
Q ss_pred hhccCCC-cCchhhhhHHHHHHhh
Q 003359 68 DLLRRSD-MDVRLSVTSCISEITR 90 (827)
Q Consensus 68 ~LLkHkD-kdVRayVAcCLADILR 90 (827)
.||.+.| ..||..++.||..|..
T Consensus 124 ~lL~~~~~~~v~~~A~~~L~~l~~ 147 (528)
T 4b8j_A 124 QFLTREDFPQLQFEAAWALTNIAS 147 (528)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhC
Confidence 3677776 8999999999999984
No 59
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=62.65 E-value=20 Score=42.82 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=28.6
Q ss_pred hhHHHHHhhhhhhhccCCCcCchhhhhHHHHHHhhhcCC
Q 003359 56 ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAP 94 (827)
Q Consensus 56 SL~pl~k~LVs~~LLkHkDkdVRayVAcCLADILRIyAP 94 (827)
-|.+++..|+. .|.|.+..|+.++|.+|.-|.+-+..
T Consensus 537 ~l~~vl~~ll~--~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 537 FLRTVILKLFE--FMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HHHHHHHHHHH--HTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46666677766 47888999999999999888876543
No 60
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=62.59 E-value=5.4 Score=34.58 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=30.6
Q ss_pred ccccCeEEEeeCC--CCceEEEEEEEecCCCC--eEEEEccC
Q 003359 711 QLVGSRIKVWWPM--DETFYKGVVDNYDPIKK--KHRILYAD 748 (827)
Q Consensus 711 ~lVG~RVkV~WP~--D~~wY~G~V~sYd~~tk--kH~V~YDD 748 (827)
-.+|.+|.|+|++ +..||.++|...+...+ +..|.|..
T Consensus 6 ~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~g 47 (76)
T 2lcc_A 6 CLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYG 47 (76)
T ss_dssp SSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETT
T ss_pred cCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCC
Confidence 3589999999994 36899999999886544 47888874
No 61
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=61.19 E-value=66 Score=37.81 Aligned_cols=145 Identities=8% Similarity=0.063 Sum_probs=95.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhh-hhccCCCcCchhhhhH--HHHHHhhhcCCCCCCCc
Q 003359 24 PPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITN-DLLRRSDMDVRLSVTS--CISEITRITAPDSPYDD 100 (827)
Q Consensus 24 ~piS~dELLKRLkkL~~eLs~lDQ~~vdS~~~SL~pl~k~LVs~-~LLkHkDkdVRayVAc--CLADILRIyAPDAPYtD 100 (827)
.+++..+|...|+.|..+.+.+|.. +...+..+|++- ..+...+.-|++|+.- .|+=. ..
T Consensus 108 d~~~~~~L~~~L~aLs~~Vs~Ld~~-------~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa----------~~ 170 (649)
T 3tj1_A 108 ERINDKNLNILLDILSSNINRIESS-------RGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSS----------IP 170 (649)
T ss_dssp TSCCHHHHHHHHHHHHHTGGGGCSG-------GGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHH----------CG
T ss_pred CcCCHHHHHHHHHHHHhhhhhcCch-------hHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhc----------cH
Confidence 3578999999999999999998752 345678888888 9998888888888752 22210 13
Q ss_pred hHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccCCchHHHHHHHHHHHHHhhcCCc------hhHHH
Q 003359 101 ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHP------HFVFA 174 (827)
Q Consensus 101 dqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDLe~ddLI~eLFktFFdiVr~~hp------~kV~~ 174 (827)
.-|..|+..+|..|..- .....+.+.+|..|..+ |..-+..++.++...+| ..+..
T Consensus 171 ~yl~~vl~mLV~~F~~~----~~~~~~~H~~L~~Il~l--------------vP~s~~~L~~iL~~~FP~~~~s~~~~~~ 232 (649)
T 3tj1_A 171 KWWQDVSMILVSCFILP----IKQTVCHHDMLKYFLRM--------------IPSSMGFIDTYLAKFFPNKNDTRRKLVN 232 (649)
T ss_dssp GGHHHHHHHHHHGGGSC----HHHHHHHHHHHHHHHHH--------------CGGGHHHHHHHHHHTCCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhccCC----CcccHHHHHHHHHHHHH--------------cCCCHHHHHHHHHHhCCCCCCchhHHHH
Confidence 67999999999998631 11234556666666543 22223334444444333 33556
Q ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHhhc
Q 003359 175 AMETIMTLVIDESEDVSWDLLRILLASVRK 204 (827)
Q Consensus 175 ~M~dILs~VIeEsE~VP~eLLDvIL~~ll~ 204 (827)
++.++|. |++=+..+-.++|.+|+..+++
T Consensus 233 Yv~NLLr-l~~Y~PeL~~~Il~LIierlik 261 (649)
T 3tj1_A 233 YTSNLLK-LRGYCSELGFQIWSLLIEKIIS 261 (649)
T ss_dssp HHHHHHH-HHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhhchHHHHHHHHHHHHHHHH
Confidence 6666665 4555677888888888887753
No 62
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=59.20 E-value=65 Score=38.97 Aligned_cols=106 Identities=11% Similarity=0.131 Sum_probs=69.9
Q ss_pred HhhHHHHHhhhhhhhccCCCcCchhhhhHHHHHHhhhcCCC-CCCCchHHHHHHHHHHHHhcccCCC-------------
Q 003359 55 DALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFENLSHA------------- 120 (827)
Q Consensus 55 ~SL~pl~k~LVs~~LLkHkDkdVRayVAcCLADILRIyAPD-APYtDdqLKDIF~LfV~qf~~LaD~------------- 120 (827)
.-|.+++..|++..-|.|++..||..+|..|..+.+-+.+. .||-+. |++.+-..|..=..+
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~----il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTES----SLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHH----HHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHH----HHHHHHHhhcCcCCCCCcccccccchhh
Confidence 35778888889888889999999999999999999998887 466543 443333333210011
Q ss_pred --CCcchHHHHHHHHHhhhhcceeeeccCC-----chHHHHHHHHHHHHHhh
Q 003359 121 --SGRYYMKALSILDTVAKVRSCLLMLDLE-----CDKLVVEMFQHFLKVIR 165 (827)
Q Consensus 121 --ssp~F~q~~yLLEsLAeVKS~VLmlDLe-----~ddLI~eLFktFFdiVr 165 (827)
++..|..++||.|.++.+=+.+-. ..+ .+.|+..+|+.+-..+.
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~-~~e~~~~~l~~ll~pl~~~l~~~l~ 657 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNL-TPEEQALYCDSLINALIGKANAALS 657 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112588899999999988554221 111 34556666666555554
No 63
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=58.99 E-value=89 Score=32.44 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=59.1
Q ss_pred HHHHHHhccccCCC----------CCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCcCchhh
Q 003359 11 EEQLKDAGNLLLNP----------PSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLS 80 (827)
Q Consensus 11 e~~l~~~G~kLi~~----------piS~dELLKRLkkL~~eLs~lDQ~~vdS~~~SL~pl~k~LVs~~LLkHkDkdVRay 80 (827)
.++++++=.-|.++ ..+.++-+.-|..|...+..+|....=.....+ ..|+. .||.|.+.+||.+
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l----~~Lv~-~lL~s~~~~vr~~ 101 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGM----HLLVG-RYLEAGAAGLRWR 101 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHH----HHHHH-TTTTCSSHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCH----HHHHH-HHHcCCCHHHHHH
Confidence 44555555555554 123345555555555555544321000001122 23443 5789999999999
Q ss_pred hhHHHHHHhhhcCCCCCCCchHHH------HHHHHHHHHhcccCCCCCcchHHHHHHHHHhhh
Q 003359 81 VTSCISEITRITAPDSPYDDELMK------EFFQLAVSAFENLSHASGRYYMKALSILDTVAK 137 (827)
Q Consensus 81 VAcCLADILRIyAPDAPYtDdqLK------DIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAe 137 (827)
+|-||..|..- +...+ ..+..++..|.. +++...-...++.|-+|+.
T Consensus 102 Aa~~Lg~ia~~--------n~~~~~~vv~~g~l~~Ll~LL~~--~~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 102 AAQLIGTCSQN--------VAAIQEQVLGLGALRKLLRLLDR--DACDTVRVKALFAISCLVR 154 (296)
T ss_dssp HHHHHHHHHTT--------CHHHHHHHHHTTHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--------CHHHHHHHHHCCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHHc
Confidence 99999999842 22222 244455555532 2232344456677777653
No 64
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=58.17 E-value=12 Score=34.41 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=30.4
Q ss_pred ccccccCeEEEeeCCCCceEEEEEEEecCCCC--eEEEEccC
Q 003359 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK--KHRILYAD 748 (827)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~sYd~~tk--kH~V~YDD 748 (827)
+.-.+|.+|-+|| +..||++.|.......+ +..|.|.+
T Consensus 21 ~~f~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~G 60 (102)
T 2f5k_A 21 PKFQEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSG 60 (102)
T ss_dssp CSCCTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETT
T ss_pred cccCCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCC
Confidence 4455999999999 68899999999775433 68888874
No 65
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=57.34 E-value=20 Score=32.21 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=30.4
Q ss_pred ccccCeEEEeeCCCCceEEEEEEEecCCC--CeEEEEccCCC
Q 003359 711 QLVGSRIKVWWPMDETFYKGVVDNYDPIK--KKHRILYADGD 750 (827)
Q Consensus 711 ~lVG~RVkV~WP~D~~wY~G~V~sYd~~t--kkH~V~YDDGD 750 (827)
-.+|.+|-|++ +..||.++|....... ....|.|.+=.
T Consensus 24 ~~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~N 63 (92)
T 2ro0_A 24 IIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYN 63 (92)
T ss_dssp CCTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSC
T ss_pred ccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcC
Confidence 35899999998 8899999999987644 36788887543
No 66
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=56.94 E-value=1.1e+02 Score=34.93 Aligned_cols=180 Identities=17% Similarity=0.197 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhh-hhhccCCCcCchhhhhH
Q 003359 5 KREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLIT-NDLLRRSDMDVRLSVTS 83 (827)
Q Consensus 5 ~~~~ele~~l~~~G~kLi~~piS~dELLKRLkkL~~eLs~lDQ~~vdS~~~SL~pl~k~LVs-~~LLkHkDkdVRayVAc 83 (827)
.-.+|.|+-+.+.-.+++ -..+.+|..-.+ .+-..|.-++. +.. +..|..+....+. ..-+...|.+.=--...
T Consensus 169 ~l~~E~E~~i~~~ikK~L-~DVT~~EF~L~m-~lL~~lkl~~t-~~g--~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~ 243 (507)
T 3u0r_A 169 VLTKEVEELILTESKKVL-EDVTGEEFVLFM-KILSGLKSLQT-VSG--RQQLVELVAEQADLEQTFNPSDPDCVDRLLQ 243 (507)
T ss_dssp TSCHHHHHHHHHHHHHHT-TSCCHHHHHHHH-HHHHTSGGGSS-HHH--HHHHHHHHHHHHTTTSCCCSSCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHh-ccccHHHHHHHH-HHHHhcccccC-chH--HHHHHHHHHHHHhccCCCCCcCHHHHHHHHH
Confidence 335788888888888888 666777753333 33344444433 221 3344444433321 13345456555555667
Q ss_pred HHHHHhhhcCCCCCCCchHHHHHHHHHHHH-hcccCCCCCc--chHHHHHHHHHhhhhcceeeeccCC-chHHHHHHHHH
Q 003359 84 CISEITRITAPDSPYDDELMKEFFQLAVSA-FENLSHASGR--YYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQH 159 (827)
Q Consensus 84 CLADILRIyAPDAPYtDdqLKDIF~LfV~q-f~~LaD~ssp--~F~q~~yLLEsLAeVKS~VLmlDLe-~ddLI~eLFkt 159 (827)
|+-..|=+|++.+. -..+|.+|..+ |+.|.+...+ --...+.||..||++-++. .+++ +.+++..+|++
T Consensus 244 C~~~ALP~FS~~v~-----StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~--~~~e~a~~~l~~iy~~ 316 (507)
T 3u0r_A 244 CTRQAVPLFSKNVH-----STRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFC--GDMEKLETNLRKLFDK 316 (507)
T ss_dssp HHHHHGGGCBTTBC-----CHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTC--CCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCC-----hHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCC--CccchHHHHHHHHHHH
Confidence 77778888887776 44588888888 8888775443 2236789999999997663 3465 77899999999
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHh
Q 003359 160 FLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASV 202 (827)
Q Consensus 160 FFdiVr~~hp~kV~~~M~dILs~VIeEsE~VP~eLLDvIL~~l 202 (827)
|+..+- .-|..+.. =.++. ++...+....+.+||..|
T Consensus 317 L~~ymP-~~p~~~~~-~~~~~----~~~p~l~fS~vECLLy~f 353 (507)
T 3u0r_A 317 LLEYMP-LPPEEAEN-GENAG----NEEPKLQFSYVECLLYSF 353 (507)
T ss_dssp HHTTSC-CCC-------------------CCCHHHHHHHHHHH
T ss_pred HHHHCC-CCcccccc-ccccc----ccCcccchhHHHHHHHHH
Confidence 998655 22322210 01111 344568888888888665
No 67
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=56.80 E-value=74 Score=32.68 Aligned_cols=124 Identities=11% Similarity=0.115 Sum_probs=61.6
Q ss_pred ccCCCcCchhhhhHHHHHHhhhc-------C-------C--CCCCC--chHHHHHHHHHHHHhcccCC-CCCcchHH---
Q 003359 70 LRRSDMDVRLSVTSCISEITRIT-------A-------P--DSPYD--DELMKEFFQLAVSAFENLSH-ASGRYYMK--- 127 (827)
Q Consensus 70 LkHkDkdVRayVAcCLADILRIy-------A-------P--DAPYt--DdqLKDIF~LfV~qf~~LaD-~ssp~F~q--- 127 (827)
+.+.+.+||..+.-++..+.+.- . | ...+. ...+..|+..++..|....+ .++..+.-
T Consensus 268 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~ 347 (462)
T 1ibr_B 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 347 (462)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHH
Confidence 45778888887777666666542 0 0 11111 12345666666666654321 11222222
Q ss_pred HHHHHHHhhhhcceeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CCcHHHHHHHHHHh
Q 003359 128 ALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DVSWDLLRILLASV 202 (827)
Q Consensus 128 ~~yLLEsLAeVKS~VLmlDLe~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE-----~VP~eLLDvIL~~l 202 (827)
....|..|+.+- + +.++..++..+....... .-.+.......|..+.+... ..-..++..|+..|
T Consensus 348 a~~~L~~l~~~~--------~-~~~~~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l 417 (462)
T 1ibr_B 348 AGVCLMLLATCC--------E-DDIVPHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 417 (462)
T ss_dssp HHHHHHHHHHHT--------T-TTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGG
T ss_pred HHHHHHHHHHhc--------c-HHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 344555554432 2 244445555554444433 34455555666666665432 11145676666666
Q ss_pred h
Q 003359 203 R 203 (827)
Q Consensus 203 l 203 (827)
.
T Consensus 418 ~ 418 (462)
T 1ibr_B 418 K 418 (462)
T ss_dssp G
T ss_pred c
Confidence 4
No 68
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=56.52 E-value=65 Score=37.72 Aligned_cols=84 Identities=8% Similarity=0.088 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHH---HhcccCCCcHHHHHHHHHHhhccCCCCChhhHHHHHHHHhhchH
Q 003359 151 KLVVEMFQHFLKVIRS-NHPHFVFAAMETIMTL---VIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAA 226 (827)
Q Consensus 151 dLI~eLFktFFdiVr~-~hp~kV~~~M~dILs~---VIeEsE~VP~eLLDvIL~~ll~~~ks~~PaAy~LA~~VI~~Cad 226 (827)
..+..||..|..+... .|| .|......++.. .+.+....=..++..|+..| . ......|...-.++|..|..
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~-~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~ 576 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNV-KLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQL 576 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCH-HHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhcCccccCH-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHH
Confidence 5667778755444322 244 454444444443 23322233445667777666 2 44555555666689999999
Q ss_pred HHHHHHHHHHHh
Q 003359 227 KLKTNLKEAVQS 238 (827)
Q Consensus 227 KLqp~I~q~l~S 238 (827)
.|.||+.++++.
T Consensus 577 ~l~p~~~~ll~~ 588 (971)
T 2x1g_F 577 QLKPYADPLLNA 588 (971)
T ss_dssp HHHHHHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 999998877664
No 69
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=56.29 E-value=96 Score=36.04 Aligned_cols=166 Identities=14% Similarity=0.098 Sum_probs=86.6
Q ss_pred HHHHHHhhhcCCCCCCCc---hHHHHHHHHHHHHhcccCCC-CCc-chHHHHHHHHHhhhhcceeeeccCCchHHHHHHH
Q 003359 83 SCISEITRITAPDSPYDD---ELMKEFFQLAVSAFENLSHA-SGR-YYMKALSILDTVAKVRSCLLMLDLECDKLVVEMF 157 (827)
Q Consensus 83 cCLADILRIyAPDAPYtD---dqLKDIF~LfV~qf~~LaD~-ssp-~F~q~~yLLEsLAeVKS~VLmlDLe~ddLI~eLF 157 (827)
.++..|++.|+-+..|.+ .-|..+|..++..|. .+. +.| .-..+|.+|..+...-.-.++ .....+..+|
T Consensus 745 ~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~--~~~~~~pd~~~~~f~ll~~~~~~~~~~~~---~~~~~~~~i~ 819 (963)
T 2x19_B 745 DLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQ--QGPRDHPDIVDSFMQLLAQALKRKPDLFL---CERLDVKAVF 819 (963)
T ss_dssp HHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHH--HCTTTCHHHHHHHHHHHHHHHHHCGGGGG---CTTSCHHHHH
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHh--hCcccCchHHHHHHHHHHHHHHhCcHHHc---CCcccHHHHH
Confidence 346777777776654442 223333444444443 122 234 335678889888865433332 1222266777
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhcccC----------CCcHHHHHHHHHHhhccCC-CCChhhHHHHHHHHhhchH
Q 003359 158 QHFLKVIRSNHPHFVFAAMETIMTLVIDESE----------DVSWDLLRILLASVRKENQ-DVSPTSWKLGEKVFTKCAA 226 (827)
Q Consensus 158 ktFFdiVr~~hp~kV~~~M~dILs~VIeEsE----------~VP~eLLDvIL~~ll~~~k-s~~PaAy~LA~~VI~~Cad 226 (827)
..+....+. ....+......+|..+|.... ..-..++..||..+..... ........+...++..+..
T Consensus 820 ~~~~~~l~~-~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~ 898 (963)
T 2x19_B 820 QCAVLALKF-PEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFS 898 (963)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChH
Confidence 777777663 334455556667777775432 2334566667766653222 2222222223455666677
Q ss_pred HHHHHHHHHHHhcCC-----CCchhHHHHHHHh
Q 003359 227 KLKTNLKEAVQSRGI-----ALDDYAEIVACIC 254 (827)
Q Consensus 227 KLqp~I~q~l~S~Gi-----~ld~Y~eIV~sI~ 254 (827)
.+..++.++|...++ +-+.-...+..++
T Consensus 899 ~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~ 931 (963)
T 2x19_B 899 LLSMWIKEALQPPGFPSARLSPEQKDTFSQQIL 931 (963)
T ss_dssp HHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHH
Confidence 777777776632233 2244555566664
No 70
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=54.92 E-value=11 Score=35.52 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=34.2
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeee
Q 003359 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEI 753 (827)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~ 753 (827)
+--||.+|..-|+ +..||.|+|++-... -.+.|.+|||-.-.
T Consensus 5 ~v~vGq~V~akh~-ngryy~~~V~~~~~~-~~y~V~F~DgS~s~ 46 (118)
T 2qqr_A 5 SITAGQKVISKHK-NGRFYQCEVVRLTTE-TFYEVNFDDGSFSD 46 (118)
T ss_dssp CCCTTCEEEEECT-TSSEEEEEEEEEEEE-EEEEEEETTSCEEE
T ss_pred eeccCCEEEEECC-CCCEEeEEEEEEeeE-EEEEEEcCCCCccC
Confidence 3458999999999 788999999997553 56889999997643
No 71
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=52.40 E-value=2.2e+02 Score=33.50 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=38.8
Q ss_pred CcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhh
Q 003359 74 DMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV 138 (827)
Q Consensus 74 DkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeV 138 (827)
..-||.-++-||.-+--.+ ..+.+..||..++..| .|.+-+-.....+-|++|.+.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~------~~~~l~~~l~~l~~~L---~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQL------TKAQLIELMPILATFL---QTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGS------CHHHHHHHHHHHHHHT---TCSCHHHHHHHHHHHHHHTTC
T ss_pred CceehHHHHHHHHHHHhhC------CHHHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHhc
Confidence 5567777666776554433 3567888888888765 455555677788889988775
No 72
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.05 E-value=1.4e+02 Score=27.61 Aligned_cols=128 Identities=11% Similarity=0.150 Sum_probs=65.5
Q ss_pred hhccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccC
Q 003359 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (827)
Q Consensus 68 ~LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDL 147 (827)
.+|.+.|..||..++.+|..+-. . +++..++..| .| +...-+...+..|+.+..
T Consensus 57 ~~l~~~~~~vr~~a~~aL~~~~~---------~----~~~~~L~~~l---~~---~~~~vr~~a~~aL~~~~~------- 110 (211)
T 3ltm_A 57 KALKDEDAWVRRAAADALGQIGD---------E----RAVEPLIKAL---KD---EDGWVRQSAAVALGQIGD------- 110 (211)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCC---------G----GGHHHHHHHT---TC---SSHHHHHHHHHHHHHHCC-------
T ss_pred HHHcCCCHHHHHHHHHHHHhhCC---------H----HHHHHHHHHH---cC---CCHHHHHHHHHHHHHhCc-------
Confidence 36678899999999999988731 1 2334444443 33 334456677777776642
Q ss_pred CchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCChhhHHHHHH-HHhhchH
Q 003359 148 ECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEK-VFTKCAA 226 (827)
Q Consensus 148 e~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE~VP~eLLDvIL~~ll~~~ks~~PaAy~LA~~-VI~~Cad 226 (827)
.+.+ ..+...+. +-...|.......|..+=+ .+.+..|+..+.. ..+.-+.-|.. +..-...
T Consensus 111 --~~~~----~~L~~~l~-d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~ 173 (211)
T 3ltm_A 111 --ERAV----EPLIKALK-DEDWFVRIAAAFALGEIGD------ERAVEPLIKALKD----EDGWVRQSAADALGEIGGE 173 (211)
T ss_dssp --GGGH----HHHHHHTT-CSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCSH
T ss_pred --HHHH----HHHHHHHh-CCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCch
Confidence 1122 22222233 2334566666665655421 2445555554422 22333333322 2223334
Q ss_pred HHHHHHHHHHHh
Q 003359 227 KLKTNLKEAVQS 238 (827)
Q Consensus 227 KLqp~I~q~l~S 238 (827)
...+.|.++++.
T Consensus 174 ~~~~~L~~~l~d 185 (211)
T 3ltm_A 174 RVRAAMEKLAET 185 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhC
Confidence 566667776664
No 73
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=56.88 E-value=3.1 Score=39.13 Aligned_cols=49 Identities=18% Similarity=0.315 Sum_probs=39.6
Q ss_pred CccccccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeec
Q 003359 706 PALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNL 756 (827)
Q Consensus 706 ~~~ge~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L 756 (827)
...|.--||..|.+--| |+.|-+|+|...-.. ..++|++||||+..|..
T Consensus 52 ~ikG~l~vG~~ve~~~~-~~~~~~~~I~~i~D~-S~YtVVFdDGD~ktLrR 100 (118)
T 2lcd_A 52 QVKGPLRVGAIVETRTS-DGSFQEAIISKLTDA-SWYTVVFDDGDERTLRR 100 (118)
Confidence 33677779999999998 568999999887654 45779999999987754
No 74
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=48.92 E-value=23 Score=39.56 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=22.6
Q ss_pred HHHHhhhhhhhccCCCcCchhhhhHHHHHHhhhcC
Q 003359 59 PTMKGLITNDLLRRSDMDVRLSVTSCISEITRITA 93 (827)
Q Consensus 59 pl~k~LVs~~LLkHkDkdVRayVAcCLADILRIyA 93 (827)
.++..|. .++.+.|.++|.-++-+|..+..-|+
T Consensus 353 ~iv~~L~--~~l~~~d~~~r~~~v~aI~~la~~~~ 385 (591)
T 2vgl_B 353 QVLAELK--EYATEVDVDFVRKAVRAIGRCAIKVE 385 (591)
T ss_dssp HHHHHHH--HHTTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHhCh
Confidence 3444444 46677888888888888877776654
No 75
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=48.92 E-value=2.8e+02 Score=29.70 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=22.6
Q ss_pred HHHHhhhhhhhccCCCcCchhhhhHHHHHHhh
Q 003359 59 PTMKGLITNDLLRRSDMDVRLSVTSCISEITR 90 (827)
Q Consensus 59 pl~k~LVs~~LLkHkDkdVRayVAcCLADILR 90 (827)
.+...|+ .+|.|.|.+|+..++.||..|..
T Consensus 244 ~~l~~L~--~lL~~~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 244 PALPALA--RLIHSNDEEVLTDACWALSYLSD 273 (528)
T ss_dssp THHHHHH--HHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHH--HHHCCCCHHHHHHHHHHHHHHHc
Confidence 3334444 36789999999999999998874
No 76
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=48.43 E-value=33 Score=38.26 Aligned_cols=117 Identities=14% Similarity=0.191 Sum_probs=59.5
Q ss_pred hhccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccC
Q 003359 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (827)
Q Consensus 68 ~LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDL 147 (827)
.+|+|.|..|+.-++.||..+..-. +-+.+.++.++.-++..|-.|.+ .++ .-++..|.+|..+-...
T Consensus 246 ~~l~~~~~~V~~ea~~~i~~l~~~~----~~~~~~~~~~~~~~~~~L~~L~~-~d~--~vr~~aL~~l~~i~~~~----- 313 (591)
T 2vgl_B 246 PRLSHANSAVVLSAVKVLMKFLELL----PKDSDYYNMLLKKLAPPLVTLLS-GEP--EVQYVALRNINLIVQKR----- 313 (591)
T ss_dssp TCSCSSTTHHHHHHHHHHHHSCCSC----CBTTBSHHHHHHHTHHHHHHHTT-SCH--HHHHHHHHHHHHHHHHC-----
T ss_pred HHHcCCChHHHHHHHHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHhc-CCc--cHHHHHHHHHHHHHHhC-----
Confidence 3689999999999999998886422 11223455555444444334443 222 34556677776653210
Q ss_pred CchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHh
Q 003359 148 ECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASV 202 (827)
Q Consensus 148 e~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE~VP~eLLDvIL~~l 202 (827)
+ +++......|| ...+.+..|...-.++|..+.++.. + ..++..|+..+
T Consensus 314 p--~~~~~~~~~~~--~~~~d~~~Ir~~al~~L~~l~~~~n-v-~~iv~~L~~~l 362 (591)
T 2vgl_B 314 P--EILKQEIKVFF--VKYNDPIYVKLEKLDIMIRLASQAN-I-AQVLAELKEYA 362 (591)
T ss_dssp C--STTTTCTTTTS--CCTTSCHHHHHHHHHHHHHTCCSST-H-HHHHHHHHHHT
T ss_pred h--HHHHHHHHhhe--eccCChHHHHHHHHHHHHHHCChhh-H-HHHHHHHHHHH
Confidence 0 01111112222 1123345566666666666665532 2 23455555444
No 77
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=48.01 E-value=57 Score=28.84 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=38.3
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcc--CCC-eeeeecCCccEEE
Q 003359 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYA--DGD-EEILNLKKERWEL 763 (827)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YD--DGD-~E~L~L~~Ek~e~ 763 (827)
-||.+|.+.-+. +.||.++|+--+....+-.|.|| +.. .||+.....++.-
T Consensus 21 ~vGmkLEA~D~~-~~~~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I~P 74 (88)
T 2eqm_A 21 EIGARLEALDYL-QKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRP 74 (88)
T ss_dssp CSSCEEEEECTT-SCEEEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCCEEC
T ss_pred CCCCEEEEEcCC-CCeeEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCcEec
Confidence 399999998765 46999999999987788999998 333 3666665555443
No 78
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=46.31 E-value=2.9e+02 Score=32.10 Aligned_cols=18 Identities=6% Similarity=-0.023 Sum_probs=12.7
Q ss_pred ChhhHHHHHHHHhhchHH
Q 003359 210 SPTSWKLGEKVFTKCAAK 227 (827)
Q Consensus 210 ~PaAy~LA~~VI~~CadK 227 (827)
.-..|.|...++..|...
T Consensus 790 ~~~~f~ll~~~~~~~~~~ 807 (963)
T 2x19_B 790 VDSFMQLLAQALKRKPDL 807 (963)
T ss_dssp HHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhCcHH
Confidence 445677778888877765
No 79
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=45.37 E-value=46 Score=30.11 Aligned_cols=48 Identities=10% Similarity=-0.010 Sum_probs=34.8
Q ss_pred cCeEEEeeCCCCceEEEEEEEecCCC-----CeEEEEccCCCeeeeecCCccEEEecCCCC
Q 003359 714 GSRIKVWWPMDETFYKGVVDNYDPIK-----KKHRILYADGDEEILNLKKERWELIKGGSS 769 (827)
Q Consensus 714 G~RVkV~WP~D~~wY~G~V~sYd~~t-----kkH~V~YDDGD~E~L~L~~Ek~e~l~~d~~ 769 (827)
|.+|-|+|+ |..||+++|..-.... .+..|.|..-... -=|||..+..
T Consensus 18 ~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkR-------lDEWV~~~RL 70 (92)
T 2bud_A 18 DKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRR-------LDGWVGRHRI 70 (92)
T ss_dssp TSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTT-------TCEEEETTTE
T ss_pred CCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccc-------cccccCHHHh
Confidence 889999997 7889999999866543 3688888754432 1256666655
No 80
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=44.71 E-value=79 Score=37.20 Aligned_cols=108 Identities=10% Similarity=0.055 Sum_probs=71.8
Q ss_pred hhHHHHHHhhhcCCCCCCCc-----hHHHHHHHHHHHHhcccC-CCCCcchHHHHHHHHHhhhhcceeeeccCC-chHHH
Q 003359 81 VTSCISEITRITAPDSPYDD-----ELMKEFFQLAVSAFENLS-HASGRYYMKALSILDTVAKVRSCLLMLDLE-CDKLV 153 (827)
Q Consensus 81 VAcCLADILRIyAPDAPYtD-----dqLKDIF~LfV~qf~~La-D~ssp~F~q~~yLLEsLAeVKS~VLmlDLe-~ddLI 153 (827)
+=+||.-+|..+.+- |+. .+...+|+.++..|...= .+-...|.|++. =.++.. +.+ ++.++
T Consensus 354 LD~im~llf~~~~~~--~~~~~l~~~~~~~lf~~Ll~~F~~~ILpT~~sr~vQFl~--Fy~cs~-------~~~~~~~Fl 422 (649)
T 3tj1_A 354 LDSILTLVSTHVEEQ--VTPESLESGEGVGVFNTLTTLFKTHVLPTYYTRSIQYIM--FHVSQQ-------QLELMDSFL 422 (649)
T ss_dssp HHHHHHHHHHHHHHH--SCHHHHHSSTHHHHHHHHHHHHHHTTTTSCSCSSTTHHH--HHHHTT-------SHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh--cCCCccccchHHHHHHHHHHHHHHhccccccCccHHHHH--HHHHhC-------CHHHHHHHH
Confidence 457787788777654 443 345679999999998543 233445666522 222222 222 56677
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHh
Q 003359 154 VEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASV 202 (827)
Q Consensus 154 ~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE~VP~eLLDvIL~~l 202 (827)
..|++.+| .++.|..++..-..-|+..|--+-.||..++..+|..|
T Consensus 423 ~~L~~~~~---~~~~~~~~RqaAaaYLaSflARAk~v~~~~v~~vl~~L 468 (649)
T 3tj1_A 423 VTLIDISF---AVNEAAEKKIKSLQYLGSYIARAKKLSRTQIIFVASYL 468 (649)
T ss_dssp HHHHHHHH---CSSSCHHHHHHHHHHHHHHHHHBTTCCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCCcHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77777766 45677788888888888899999899988777776654
No 81
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=43.99 E-value=1.4e+02 Score=29.57 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=60.6
Q ss_pred CCCCCc---hHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccCCchHHHHHHHHHHHHHhhcCCchh
Q 003359 95 DSPYDD---ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHF 171 (827)
Q Consensus 95 DAPYtD---dqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDLe~ddLI~eLFktFFdiVr~~hp~k 171 (827)
-.|++| +.+.++|.-.|.+++-= ...++.+|.||+=+.|...-+ -|++ --+++|+.+.++ ...+ .+
T Consensus 27 g~p~~d~~l~rlrd~YerAia~~Pp~---k~~~wrrYI~LWIrYA~~~ei---~D~d---~aR~vy~~a~~~-hKkF-AK 95 (161)
T 4h7y_A 27 SVPLSDALLNKLIGRYSQAIEALPPD---KYGQNESFARIQVRFAELKAI---QEPD---DARDYFQMARAN-CKKF-AF 95 (161)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHSCGG---GGTTCHHHHHHHHHHHHHHHH---HCGG---GCHHHHHHHHHH-CTTB-HH
T ss_pred CCCchhhHHHHHHHHHHHHHHcCCcc---ccccHHHHHHHHHHHHHHHHh---cCHH---HHHHHHHHHHHH-hHHH-HH
Confidence 457776 57778888777776532 377899999999999988433 6666 225566666553 3333 22
Q ss_pred HH-------------HHHHHHHHHHhcccCCCcHHHHHHHHHHhhcc
Q 003359 172 VF-------------AAMETIMTLVIDESEDVSWDLLRILLASVRKE 205 (827)
Q Consensus 172 V~-------------~~M~dILs~VIeEsE~VP~eLLDvIL~~ll~~ 205 (827)
|. ..-..||..-|. .-..|.++|...|.++..+
T Consensus 96 iwi~~AqFEiRqgnl~kARkILg~AiG-~~~k~~~~le~a~~nl~~~ 141 (161)
T 4h7y_A 96 VHISFAQFELSQGNVKKSKQLLQKAVE-RGAVPLEMLEIALRNLNLQ 141 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhc-cCCCcHHHHHHHHHhhhcC
Confidence 11 112245555555 3356777777777766544
No 82
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=43.85 E-value=1.3e+02 Score=32.33 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.2
Q ss_pred hccCCCcCchhhhhHHHHHHhh
Q 003359 69 LLRRSDMDVRLSVTSCISEITR 90 (827)
Q Consensus 69 LLkHkDkdVRayVAcCLADILR 90 (827)
+|.|.+..||..++.||..|..
T Consensus 307 lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 307 LLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHCCCChhhHHHHHHHHHHHHc
Confidence 6788999999999999998874
No 83
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=43.54 E-value=6.6 Score=37.19 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=33.8
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCee
Q 003359 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEE 752 (827)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E 752 (827)
+--||.+|..-|+ +..||.|+|++-.. .-.+.|.||||-.-
T Consensus 6 ~v~vGq~V~ak~~-ngryy~~~V~~~~~-~~~y~V~F~DgS~s 46 (123)
T 2xdp_A 6 VISVGQTVITKHR-NTRYYSCRVMAVTS-QTFYEVMFDDGSFS 46 (123)
T ss_dssp CCCTTCCCCCCCC-CCCCCCCEEEEEEE-EEEEEEEETTSCEE
T ss_pred ccccCCEEEEECC-CCcEEeEEEEEEee-EEEEEEEcCCCCcc
Confidence 3458888888899 58899999999886 45689999999764
No 84
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=43.50 E-value=1.1e+02 Score=34.85 Aligned_cols=115 Identities=11% Similarity=0.102 Sum_probs=66.7
Q ss_pred hccCCCc--CchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeecc
Q 003359 69 LLRRSDM--DVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLD 146 (827)
Q Consensus 69 LLkHkDk--dVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlD 146 (827)
.|.|.+. .|-.-++.||..+- | ..+.+..++..+..-+ . ++...-+|..|.+|..+-...
T Consensus 299 ~l~~~n~~~aVl~ea~~~i~~l~----~----~~~~~~~~~~~L~~~L---~---~~~~niry~aL~~l~~l~~~~---- 360 (621)
T 2vgl_A 299 KVQHSNAKNAVLFEAISLIIHHD----S----EPNLLVRACNQLGQFL---Q---HRETNLRYLALESMCTLASSE---- 360 (621)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHHHS---S---CSCHHHHHHHHHHHHHHTTCT----
T ss_pred cccccchHHHHHHHHHHHHHhcC----C----cHHHHHHHHHHHHHHh---c---CCCcchHHHHHHHHHHHHhcc----
Confidence 5677776 66666666666652 2 2233343444333322 2 222234556777777763211
Q ss_pred CCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhc
Q 003359 147 LECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRK 204 (827)
Q Consensus 147 Le~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE~VP~eLLDvIL~~ll~ 204 (827)
+..+++...+..||...+.+.+..|...-.+||..++.+.. =..|+..|+.++..
T Consensus 361 -~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N--v~~Iv~eL~~yl~~ 415 (621)
T 2vgl_A 361 -FSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN--AQQIVAEMLSYLET 415 (621)
T ss_dssp -TTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh--HHHHHHHHHHHHHh
Confidence 22356777778888877745556788888899999988742 14556666666543
No 85
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=42.68 E-value=2.5e+02 Score=33.54 Aligned_cols=116 Identities=6% Similarity=0.186 Sum_probs=70.6
Q ss_pred hhhhh-HHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccCC-c------
Q 003359 78 RLSVT-SCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE-C------ 149 (827)
Q Consensus 78 RayVA-cCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDLe-~------ 149 (827)
|+.+| .||+-|.|..+-..+|.. .+..|+. -.++|+. ++++ .+-.+.|.-++.|=++|.+.|+. .
T Consensus 399 rl~~aL~~l~~~~r~lv~~~~yr~-hl~~lL~---l~LpgID-~ND~--~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~ 471 (799)
T 1vsy_4 399 RIISSLKQFTRVIRFIVMDKLYRV-HITNVLS---MLVSKLD-MNDT--NLTSNLINGIVSIAAFIPIQDLTGEDDYISF 471 (799)
T ss_dssp HHHHHHHHHHTTHHHHTTSTTGGG-HHHHHHH---HHHHTCC-SSCH--HHHHHHHHHHHHHHHTSCBCCCCCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHhcCcccHH-HHHHHHH---HHhccCC-cccH--HHHHHHHHHHHHHHHhccccccCCcchhhhh
Confidence 44443 479999999998888854 4444443 3444543 4444 35666777777777777777664 1
Q ss_pred ------------------------------------------hHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc
Q 003359 150 ------------------------------------------DKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES 187 (827)
Q Consensus 150 ------------------------------------------ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEs 187 (827)
.+++.++|.-+|..+..+.-..|...+...+..++.
T Consensus 472 ~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~-- 549 (799)
T 1vsy_4 472 ESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQE-- 549 (799)
T ss_dssp HHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHH--
T ss_pred hhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH--
Confidence 167777777788877665555555544444443333
Q ss_pred CCCcHHHHHHHHHHhh
Q 003359 188 EDVSWDLLRILLASVR 203 (827)
Q Consensus 188 E~VP~eLLDvIL~~ll 203 (827)
.++.++.+.++..|.
T Consensus 550 -~lS~~if~~~l~k~~ 564 (799)
T 1vsy_4 550 -SMDDKIFNYFASLLN 564 (799)
T ss_dssp -TBCHHHHHHHHHHHH
T ss_pred -hCCHHHHHHHHHHHH
Confidence 566676666666644
No 86
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=42.58 E-value=2.5e+02 Score=27.29 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=17.3
Q ss_pred hhccCCCcCchhhhhHHHHHHh
Q 003359 68 DLLRRSDMDVRLSVTSCISEIT 89 (827)
Q Consensus 68 ~LLkHkDkdVRayVAcCLADIL 89 (827)
.+|.+.|..||..++-+|..+-
T Consensus 30 ~~L~~~~~~vr~~A~~~L~~~~ 51 (280)
T 1oyz_A 30 RLLDDHNSLKRISSARVLQLRG 51 (280)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHccC
Confidence 3567888889988888888764
No 87
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=41.90 E-value=65 Score=28.06 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=42.3
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCCCe----eeeecCCccEEEecCCCC
Q 003359 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDE----EILNLKKERWELIKGGSS 769 (827)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~sYd~~tk---kH~V~YDDGD~----E~L~L~~Ek~e~l~~d~~ 769 (827)
..++|++|.|+-- +.+.|.|++.+||.--. ...+.|.+|.. ..+-+.-..+.++.....
T Consensus 12 ~~~~~k~V~V~Lk-~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~ 77 (86)
T 3s6n_F 12 NGLTGKPVMVKLK-WGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEE 77 (86)
T ss_dssp HHHTTSEEEEEET-TSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC-
T ss_pred HHhCCCeEEEEEc-CCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCc
Confidence 5679999999776 46899999999998665 34556667743 245556777888776533
No 88
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=41.77 E-value=44 Score=34.71 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=36.4
Q ss_pred HHhhHHHHHhhhhhhhccCCCcCchhhhhHHHHHHhhhcCCCCCCCc
Q 003359 54 RDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDD 100 (827)
Q Consensus 54 ~~SL~pl~k~LVs~~LLkHkDkdVRayVAcCLADILRIyAPDAPYtD 100 (827)
-.....++.+|+-..|=.|....=.+++++||+=|..=--+|+-|+.
T Consensus 35 Frq~rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~ 81 (235)
T 3bu8_A 35 FRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDM 81 (235)
T ss_dssp HHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSS
T ss_pred HHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHcCCCCCcccCC
Confidence 44567788888877777776666788999998777777778888874
No 89
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=41.38 E-value=56 Score=27.28 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=30.2
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC
Q 003359 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD 748 (827)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDD 748 (827)
-||.++++.-+... ||.++|+..+-..++-.|.||.
T Consensus 14 ~vGmkLEa~d~~~p-~~~AtV~~v~~~~~~~~VhfdG 49 (69)
T 3sd4_A 14 EVGAQLEARDRLKN-WYPAHIEDIDYEEGKVLIHFKR 49 (69)
T ss_dssp STTCEEEEECTTSC-EEEEEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEECCCC-ccccEEEEEeccCCEEEEEeCC
Confidence 38999999888665 6999999987667888999984
No 90
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=40.85 E-value=24 Score=31.58 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=26.6
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCCe
Q 003359 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKKK 741 (827)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkk 741 (827)
..+||+.|+|-=- |+..|.|.|.+|||...-
T Consensus 13 ~~li~KeV~V~l~-dg~~y~G~l~tvDp~s~s 43 (86)
T 1y96_A 13 QDYIYKEVRVTAS-EKNEYKGWVLTTDPVSAN 43 (86)
T ss_dssp HHTTTCEEEEEET-TTEEEEEEEEEECTTTCC
T ss_pred HhhcCCEEEEEEc-CCCEEEEEEEEECCCceE
Confidence 5789999999876 788999999999997653
No 91
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=40.51 E-value=1.9e+02 Score=28.78 Aligned_cols=143 Identities=10% Similarity=0.108 Sum_probs=80.6
Q ss_pred hccCCCcCchhhhhHHHHH-HhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeee-cc
Q 003359 69 LLRRSDMDVRLSVTSCISE-ITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLM-LD 146 (827)
Q Consensus 69 LLkHkDkdVRayVAcCLAD-ILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLm-lD 146 (827)
.|.+++-.-|.-+..+|.. ++.= .|+....+....+++..+...+. .|.+-..-...+..|..||+.- - -.
T Consensus 24 ~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~--~D~n~~v~~~A~~al~~la~~l----~~~~ 96 (249)
T 2qk1_A 24 RITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQ--KDANIQAVALAAQSVELICDKL----KTPG 96 (249)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHH----CTTT
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHhc----cccc
Confidence 4567787888888888888 8742 34432212233355666655542 2343333345566666666321 1 11
Q ss_pred CCch-HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CCcHHHHHHHHHHhhccCCCCChhhHHHHHHH
Q 003359 147 LECD-KLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DVSWDLLRILLASVRKENQDVSPTSWKLGEKV 220 (827)
Q Consensus 147 Le~d-dLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE-----~VP~eLLDvIL~~ll~~~ks~~PaAy~LA~~V 220 (827)
+ . .....++-.+|+...+.. ..|...+..-|..+++..+ .-...+++.|+..|... +|..+.-+-..
T Consensus 97 f--~~~y~~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k----~~~vk~~al~~ 169 (249)
T 2qk1_A 97 F--SKDYVSLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK----TPQIRMECTQL 169 (249)
T ss_dssp S--CHHHHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS----SHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC----ChHHHHHHHHH
Confidence 1 2 455566777777766544 4566666666666666553 11457888888776432 45555555555
Q ss_pred Hhhch
Q 003359 221 FTKCA 225 (827)
Q Consensus 221 I~~Ca 225 (827)
|..|.
T Consensus 170 l~~~~ 174 (249)
T 2qk1_A 170 FNASM 174 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55555
No 92
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=40.14 E-value=33 Score=35.24 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=35.5
Q ss_pred ccccccCeEEEeeCCCCceEEEEEEEecC--CCCeEEEEccCCCeeee
Q 003359 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDP--IKKKHRILYADGDEEIL 754 (827)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~sYd~--~tkkH~V~YDDGD~E~L 754 (827)
|+-.||.||=--|- ...||.|+|+.--+ ...+..|.|+++....|
T Consensus 7 ~~l~Vg~~vlg~k~-~~~W~rg~v~~I~~~~~g~~YkVkF~~~g~~iv 53 (213)
T 3dlm_A 7 GDLIVSMRILGKKR-TKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLL 53 (213)
T ss_dssp TTEETTCEEEEECT-TSBEEEEEEEEEEEETTEEEEEEEESSSCEEEE
T ss_pred CcEEEccEEEEEec-CCcEEEEEEEEEEECCCCeEEEEEEcCCCCEEe
Confidence 55669999999994 68899999999555 34679999997666543
No 93
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=36.11 E-value=78 Score=34.15 Aligned_cols=124 Identities=7% Similarity=0.071 Sum_probs=62.0
Q ss_pred hhccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccC
Q 003359 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (827)
Q Consensus 68 ~LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDL 147 (827)
.+|.+.+..|+..++.||+.|.+-..|..+ ......++..++..|. +.+...-......|.+|+....-.
T Consensus 222 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~--~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~~~----- 291 (530)
T 1wa5_B 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPD--WSVVSQALPTLAKLIY---SMDTETLVDACWAISYLSDGPQEA----- 291 (530)
T ss_dssp HGGGSCCHHHHHHHHHHHHHHHCCSSSCCC--HHHHGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHHSSCHHH-----
T ss_pred HHhccCCHHHHHHHHHHHHHHhCCCCCCCc--HHHHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCHHH-----
Confidence 356678899999999999999985434433 2344556666665543 333223333455555555321000
Q ss_pred CchHHHH-HHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-----CcHHHHHHHHHHhh
Q 003359 148 ECDKLVV-EMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-----VSWDLLRILLASVR 203 (827)
Q Consensus 148 e~ddLI~-eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE~-----VP~eLLDvIL~~ll 203 (827)
...++. .++..++..+... ...|......+|..+....+. +...++..|+.-|.
T Consensus 292 -~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 351 (530)
T 1wa5_B 292 -IQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351 (530)
T ss_dssp -HHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred -HHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHc
Confidence 011111 2334444544432 344555555555555543222 12235555555544
No 94
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=35.73 E-value=49 Score=34.17 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=36.8
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCC---------CeEEEEccCC-CeeeeecCCccE
Q 003359 713 VGSRIKVWWPMDETFYKGVVDNYDPIK---------KKHRILYADG-DEEILNLKKERW 761 (827)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~sYd~~t---------kkH~V~YDDG-D~E~L~L~~Ek~ 761 (827)
||--|-..|....+||+|.|+.+.... --.+|.|||= +...+.|....+
T Consensus 5 i~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~i 63 (226)
T 3ask_A 5 VNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDV 63 (226)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGE
T ss_pred cCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccccc
Confidence 788899999999999999999998844 2355899864 555565543333
No 95
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=35.50 E-value=33 Score=30.49 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=37.8
Q ss_pred cccccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCCCee----eeecCCccEEEec
Q 003359 708 LNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDEE----ILNLKKERWELIK 765 (827)
Q Consensus 708 ~ge~lVG~RVkV~WP~D~~wY~G~V~sYd~~tk---kH~V~YDDGD~E----~L~L~~Ek~e~l~ 765 (827)
.-..++|++|.|+--..++-|.|++.+||.--. .-.+.|.+|... .+-+.-..+.++.
T Consensus 25 ~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~ 89 (93)
T 1n9r_A 25 FLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIR 89 (93)
T ss_dssp -CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEE
T ss_pred HHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEE
Confidence 346789999999877554899999999998665 344555444322 2333455555554
No 96
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=33.36 E-value=1.8e+02 Score=29.74 Aligned_cols=119 Identities=11% Similarity=0.114 Sum_probs=63.1
Q ss_pred hhccCC-CcCchhhhhHHHHHHhhhcCCCCCCCchHHHH-----HHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcce
Q 003359 68 DLLRRS-DMDVRLSVTSCISEITRITAPDSPYDDELMKE-----FFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSC 141 (827)
Q Consensus 68 ~LLkHk-DkdVRayVAcCLADILRIyAPDAPYtDdqLKD-----IF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~ 141 (827)
.+|.+. |..||..++-||..|..- +.+..+. +...++.. |.+.+...-.+....|.+|+....
T Consensus 71 ~~L~~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~i~~L~~l---L~~~~~~vr~~a~~~L~~l~~~~~- 139 (450)
T 2jdq_A 71 EFLKRKENCTLQFESAWVLTNIASG-------NSLQTRIVIQAGAVPIFIEL---LSSEFEDVQEQAVWALGNIAGDST- 139 (450)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHSS-------CHHHHHHHHHTTHHHHHHHH---TTCSCHHHHHHHHHHHHHHHTTCH-
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcC-------CHHHHHHHHhCCCHHHHHHH---HcCCCHHHHHHHHHHHHHHccCCH-
Confidence 356677 899999999999999862 2233333 33334433 333332233445666766665311
Q ss_pred eeeccCCchHHHH--HHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc-CC----CcHHHHHHHHHHhh
Q 003359 142 LLMLDLECDKLVV--EMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES-ED----VSWDLLRILLASVR 203 (827)
Q Consensus 142 VLmlDLe~ddLI~--eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEs-E~----VP~eLLDvIL~~ll 203 (827)
+.-+.+. .++..+...+..+....|.......|..+.... .. +-..++..|+.-+.
T Consensus 140 ------~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~ 202 (450)
T 2jdq_A 140 ------MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202 (450)
T ss_dssp ------HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT
T ss_pred ------HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 0111111 234455555554455666666666666666443 11 12456666665554
No 97
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=33.10 E-value=5.1e+02 Score=28.16 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhcc-CCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHH
Q 003359 28 VDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLR-RSDMDVRLSVTSCISEITRITAPDSPYDDELMKEF 106 (827)
Q Consensus 28 ~dELLKRLkkL~~eLs~lDQ~~vdS~~~SL~pl~k~LVs~~LLk-HkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDI 106 (827)
.+.++.-++.+...|+.-...+.+.+.+ ..+.-.||. ||. +.+..++..+|.||..|..- ++++.+.|
T Consensus 90 ~~~q~~a~~~~rklLs~~~~~~i~~ii~--~G~ip~Lv~--lL~~~~~~~~q~~Aa~aL~nia~~-------~~~~~~~v 158 (529)
T 3tpo_A 90 LESQLQATQAARKLLSREKQPPIDNIIR--AGLIPKFVS--FLGKTDCSPIQFESAWALTNIASG-------TSEQTKAV 158 (529)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCCHHHHHH--TTHHHHHHH--HHTCTTCHHHHHHHHHHHHHHHTS-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCchHHHHHH--CCCHHHHHH--HHcCCCCHHHHHHHHHHHHHHHcC-------CHHHHHHH
Confidence 4455556666666666444333342222 122333442 554 45588999999999999753 44555555
Q ss_pred HHH-HHHHh-cccCCCCCcchHHHHHHHHHhhh
Q 003359 107 FQL-AVSAF-ENLSHASGRYYMKALSILDTVAK 137 (827)
Q Consensus 107 F~L-fV~qf-~~LaD~ssp~F~q~~yLLEsLAe 137 (827)
+.. .|..| ..|.+++.....+....|.+||.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAG 191 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 432 22222 23344444455566777777764
No 98
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=32.90 E-value=41 Score=28.24 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=37.8
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCCCe----eeeecCCccEEEecC
Q 003359 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDE----EILNLKKERWELIKG 766 (827)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~sYd~~tk---kH~V~YDDGD~----E~L~L~~Ek~e~l~~ 766 (827)
..++|++|.|+-- |.+-|.|++.+||.--. ...+.|..+.. ..+-+.-..+.++..
T Consensus 10 ~~~~~~~V~V~L~-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~ 72 (77)
T 1i4k_A 10 NRSLKSPVIVRLK-GGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSP 72 (77)
T ss_dssp HTTTTSEEEEEET-TSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEE
T ss_pred HHhCCCEEEEEEc-CCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEe
Confidence 5678999999766 57899999999998665 34455543322 234445566666554
No 99
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=31.73 E-value=1.1e+02 Score=33.37 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.1
Q ss_pred hhccCCCcCchhhhhHHHHHHhh
Q 003359 68 DLLRRSDMDVRLSVTSCISEITR 90 (827)
Q Consensus 68 ~LLkHkDkdVRayVAcCLADILR 90 (827)
.||.|.+..||..+|.||+.|..
T Consensus 323 ~LL~~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 323 SLLTNPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp -CTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHc
Confidence 57899999999999999999874
No 100
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=31.63 E-value=1.3e+02 Score=30.90 Aligned_cols=124 Identities=8% Similarity=0.108 Sum_probs=62.2
Q ss_pred hccC-CCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccC
Q 003359 69 LLRR-SDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (827)
Q Consensus 69 LLkH-kDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDL 147 (827)
+|.+ .+..||..++.||..|.+-..|...+ ..+..++..++..+. +.+..........|.+|+....-.
T Consensus 157 ~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l~~~~~~~----- 226 (450)
T 2jdq_A 157 LFSKQNRLTMTRNAVWALSNLCRGKSPPPEF--AKVSPCLNVLSWLLF---VSDTDVLADACWALSYLSDGPNDK----- 226 (450)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG--GGTGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHTSSSHHH-----
T ss_pred HhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHCCCcHH-----
Confidence 4453 68899999999999999864454432 223555555555543 333223333445555554321000
Q ss_pred CchHHH-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-----CcHHHHHHHHHHhhc
Q 003359 148 ECDKLV-VEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-----VSWDLLRILLASVRK 204 (827)
Q Consensus 148 e~ddLI-~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE~-----VP~eLLDvIL~~ll~ 204 (827)
...++ ..++..++..+.. ....|......+|..+....+. +...++..|+.-+..
T Consensus 227 -~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 227 -IQAVIDAGVCRRLVELLMH-NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp -HHHHHHTTTHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred -HHHHHHcCcHHHHHHHHCC-CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC
Confidence 00111 1234444554442 2345555556666655544322 222456666655543
No 101
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=30.56 E-value=97 Score=28.91 Aligned_cols=150 Identities=11% Similarity=0.123 Sum_probs=0.0
Q ss_pred hhccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHH---HHHHHHhcccCCCCCcchHHHHHHHHHhh--hhccee
Q 003359 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFF---QLAVSAFENLSHASGRYYMKALSILDTVA--KVRSCL 142 (827)
Q Consensus 68 ~LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF---~LfV~qf~~LaD~ssp~F~q~~yLLEsLA--eVKS~V 142 (827)
.+|.+.|.+||..++.||..|. +.....++.+ ..+-.-+.-|.+.+...-.....+|.+|+ .-....
T Consensus 51 ~ll~~~~~~v~~~a~~~L~~l~--------~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 122 (252)
T 4hxt_A 51 KLLTSTDSEVQKEAARALANIA--------SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHT--------TSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHH--------cCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Q ss_pred eeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-----CcHHHHHHHHHHhhccCCCCChhhHHHH
Q 003359 143 LMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-----VSWDLLRILLASVRKENQDVSPTSWKLG 217 (827)
Q Consensus 143 LmlDLe~ddLI~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE~-----VP~eLLDvIL~~ll~~~ks~~PaAy~LA 217 (827)
.+.+...-+.+.++++ +....+......+|..+....+. +...++..|+.-+...+....-.|...-
T Consensus 123 ~~~~~~~i~~L~~~l~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 194 (252)
T 4hxt_A 123 AIVDAGGVEVLVKLLT--------STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARAL 194 (252)
T ss_dssp HHHHTTHHHHHHHHTT--------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHc--------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_pred HHHHhhchHHHHHHHH
Q 003359 218 EKVFTKCAAKLKTNLK 233 (827)
Q Consensus 218 ~~VI~~CadKLqp~I~ 233 (827)
..++.......+..+.
T Consensus 195 ~~l~~~~~~~~~~l~~ 210 (252)
T 4hxt_A 195 ANIASGPTSAIKAIVD 210 (252)
T ss_dssp HHHTTSBHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
No 102
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=30.44 E-value=30 Score=30.08 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=24.1
Q ss_pred HHHHhhhcCC-CCCCCc---hHHHHHHHHHHHH
Q 003359 85 ISEITRITAP-DSPYDD---ELMKEFFQLAVSA 113 (827)
Q Consensus 85 LADILRIyAP-DAPYtD---dqLKDIF~LfV~q 113 (827)
|..+||+|+| ++||+. +||+....-.++.
T Consensus 28 Ih~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e 60 (74)
T 1ldd_A 28 IHSFLKITVPKDWGYNRITLQQLEGYLNTLADE 60 (74)
T ss_dssp HHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhC
Confidence 6789999999 578976 9999988877765
No 103
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=29.38 E-value=2e+02 Score=26.45 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.3
Q ss_pred hhccCCCcCchhhhhHHHHHHhh
Q 003359 68 DLLRRSDMDVRLSVTSCISEITR 90 (827)
Q Consensus 68 ~LLkHkDkdVRayVAcCLADILR 90 (827)
.||.|.|.+||..++.||..|.+
T Consensus 19 ~LL~s~~~~v~~~a~~~L~~l~~ 41 (210)
T 4db6_A 19 QQLNSPDQQELQSALRKLSQIAS 41 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHc
Confidence 56889999999999999999874
No 104
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=29.17 E-value=1.6e+02 Score=32.22 Aligned_cols=56 Identities=23% Similarity=0.249 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcccCCch-hhHHhhHHHHHhhhhhhhccCCCcCchhhhhHHHHHHhh
Q 003359 33 NLLDKVEHLLANVEQAPSR-SMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITR 90 (827)
Q Consensus 33 KRLkkL~~eLs~lDQ~~vd-S~~~SL~pl~k~LVs~~LLkHkDkdVRayVAcCLADILR 90 (827)
..++.+...|+.+-.+... ........+...|+ .||.|.|.+|+..++.||+.+..
T Consensus 224 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~--~LL~~~~~~v~~~a~~aL~~l~~ 280 (529)
T 3tpo_A 224 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV--RLLHHNDPEVLADSCWAISYLTD 280 (529)
T ss_dssp HHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHH--HHTTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHH--HHhcCCcHHHHHHHHHHHHHhhh
Confidence 3445566666666443221 01223344444555 47899999999999999999884
No 105
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=27.39 E-value=3.2e+02 Score=31.06 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=70.5
Q ss_pred hccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhc-ccCCCCCcchHHHHHHHHHhhhhcceeeeccC
Q 003359 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFE-NLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (827)
Q Consensus 69 LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~-~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDL 147 (827)
++.++|..+|-++-.++..++. +. . |+..+++.+|. .|.|+ +|+ -+-.-|.+|+.++.
T Consensus 82 l~~s~~~~~Krl~YL~l~~~~~----~~---~----e~~~L~iN~l~kDl~~~-n~~--ir~lALr~L~~i~~------- 140 (621)
T 2vgl_A 82 LLSSNRYTEKQIGYLFISVLVN----SN---S----ELIRLINNAIKNDLASR-NPT--FMGLALHCIANVGS------- 140 (621)
T ss_dssp GGGCSCHHHHHHHHHHHHHSCC----CC---H----HHHHHHHHHHHHHHHSC-CHH--HHHHHHHHHHHHCC-------
T ss_pred HhcCCCHHHHHHHHHHHHHHcc----CC---c----HHHHHHHHHHHHhcCCC-CHH--HHHHHHHHhhccCC-------
Confidence 6677888888777777666552 21 1 55567777765 55533 343 36677888888764
Q ss_pred CchHHHHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhccc-CCCcH-HHHHHHHHHhhccCCCCChhhHHHHHHHHhhc
Q 003359 148 ECDKLVVEMFQHFLKVIR-SNHPHFVFAAMETIMTLVIDES-EDVSW-DLLRILLASVRKENQDVSPTSWKLGEKVFTKC 224 (827)
Q Consensus 148 e~ddLI~eLFktFFdiVr-~~hp~kV~~~M~dILs~VIeEs-E~VP~-eLLDvIL~~ll~~~ks~~PaAy~LA~~VI~~C 224 (827)
.+++..+...++..+. .+...-|+....--+..+..-. +.++. .+++.|..-|-..+....-+|..+-..|+...
T Consensus 141 --~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 141 --REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp --HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 3466666666666552 2334455554433333333322 23332 45555555443333333333444444444433
No 106
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=26.76 E-value=4e+02 Score=25.00 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.2
Q ss_pred hhccCCCcCchhhhhHHHHHHh
Q 003359 68 DLLRRSDMDVRLSVTSCISEIT 89 (827)
Q Consensus 68 ~LLkHkDkdVRayVAcCLADIL 89 (827)
.+|.+.|..||..++.||..|.
T Consensus 103 ~lL~~~~~~v~~~a~~~L~~l~ 124 (252)
T 4db8_A 103 QLLSSPNEQILQEALWALSNIA 124 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHhh
Confidence 5678889999999999999995
No 107
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=26.21 E-value=1.4e+02 Score=35.63 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=29.3
Q ss_pred CcCchhhhhHHHHHHhhhcCCCCCCC---chHHHHHHHHHHHHhcc
Q 003359 74 DMDVRLSVTSCISEITRITAPDSPYD---DELMKEFFQLAVSAFEN 116 (827)
Q Consensus 74 DkdVRayVAcCLADILRIyAPDAPYt---DdqLKDIF~LfV~qf~~ 116 (827)
+.++|..+.-||.+|+....| |++ +..+..+|..++.++..
T Consensus 247 ~~~~~~~a~~~L~~i~~~~~~--~~~~~~~~~~~~l~~~~l~~l~~ 290 (1049)
T 3m1i_C 247 SPDTRAITLKCLTEVSNLKIP--QDNDLIKRQTVLFFQNTLQQIAT 290 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHCCCC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHHHHHHHHHHH
Confidence 788999999999999988544 332 24666777777775543
No 108
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=26.02 E-value=64 Score=27.17 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=36.7
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCCCe----eeeecCCccEEEec
Q 003359 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDE----EILNLKKERWELIK 765 (827)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~sYd~~tk---kH~V~YDDGD~----E~L~L~~Ek~e~l~ 765 (827)
..++|++|.|.--.+++-|.|++.+||.--. ...+.|..|.. ..+-+.-..+.++.
T Consensus 11 ~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~ 73 (77)
T 1ljo_A 11 KSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQ 73 (77)
T ss_dssp HHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEE
T ss_pred HHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEE
Confidence 4679999999886443899999999998665 34445544432 12334455555554
No 109
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=25.91 E-value=1.3e+02 Score=29.41 Aligned_cols=44 Identities=7% Similarity=0.132 Sum_probs=34.7
Q ss_pred ccccCeEEEeeCC-CCceEEEEEEEec----CCCCeEEEEccCCCeeee
Q 003359 711 QLVGSRIKVWWPM-DETFYKGVVDNYD----PIKKKHRILYADGDEEIL 754 (827)
Q Consensus 711 ~lVG~RVkV~WP~-D~~wY~G~V~sYd----~~tkkH~V~YDDGD~E~L 754 (827)
..+--||--||++ ...||.++..+-. -...+..|+|||+..-.+
T Consensus 6 ~~~~NrVfAff~G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~~~~V 54 (153)
T 2fhd_A 6 RSFKNRVLAFFKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDATMSTV 54 (153)
T ss_dssp CCGGGEEEEECCSSSCCEEEEEEEEEECCSSCCBCEEEEEETTSCEEEE
T ss_pred ccccceEEEEcCCCcccccceEEEccCCCcccCCeEEEEEEcCCCCCcc
Confidence 3446788999995 5889999999877 356789999999955553
No 110
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=25.43 E-value=61 Score=27.09 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=36.5
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCCCe----eeeecCCccEEEec
Q 003359 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDE----EILNLKKERWELIK 765 (827)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~sYd~~tk---kH~V~YDDGD~----E~L~L~~Ek~e~l~ 765 (827)
..++|++|.|.-- |.+-|.|++.+||.--. ...+.|..|.. ..+-+.-..+.++.
T Consensus 10 ~~~~~~~V~V~l~-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~ 71 (75)
T 1h64_1 10 HRSLDKDVLVILK-KGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAIS 71 (75)
T ss_dssp HTTTTSEEEEEET-TSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEE
T ss_pred HHHCCCEEEEEEC-CCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEE
Confidence 5679999999766 67899999999998665 34555544322 12334455555554
No 111
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=25.38 E-value=5.9e+02 Score=26.45 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=38.9
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHH---HHHHHHhhccCCCCChhhHHHHHHHHhhchHHHHHH
Q 003359 156 MFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLL---RILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTN 231 (827)
Q Consensus 156 LFktFFdiVr~~hp~kV~~~M~dILs~VIeEsE~VP~eLL---DvIL~~ll~~~ks~~PaAy~LA~~VI~~CadKLqp~ 231 (827)
+|..+.+.++..++ .+..-..+.|..+|+....-|...+ ..|...|-..+.+.--+|-..-..+....++++-.+
T Consensus 168 v~~~l~~g~ksKN~-R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~ 245 (266)
T 2of3_A 168 MTPMLLDALKSKNA-RQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKA 245 (266)
T ss_dssp HHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHccCCH-HHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555554 3444445566778888765555555 555555544444444444444444444445554433
No 112
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=25.38 E-value=57 Score=28.02 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=30.1
Q ss_pred ccccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCC
Q 003359 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADG 749 (827)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~sYd~~tk---kH~V~YDDG 749 (827)
=..++|++|.|+-- |.+-|.|++.+||.--. ...+.|..|
T Consensus 20 L~~~~~~~V~V~Lk-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~ 62 (83)
T 1mgq_A 20 LGNSLNSPVIIKLK-GDREFRGVLKSFDLHMNLVLNDAEELEDG 62 (83)
T ss_dssp HHHTTTSEEEEEET-TTEEEEEEEEEECTTCCEEEEEEEEEETT
T ss_pred HHHhCCCEEEEEEc-CCcEEEEEEEEECCCceeEEccEEEEecC
Confidence 36679999999766 67899999999998665 344555433
No 113
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=25.15 E-value=62 Score=27.24 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=29.5
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCCe---EEEEccCCC
Q 003359 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKKK---HRILYADGD 750 (827)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkk---H~V~YDDGD 750 (827)
..++|++|.|+-- +.+.|.|++.+||.--.- ..+.|.+|.
T Consensus 10 ~~~~~k~V~V~Lk-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~ 52 (75)
T 4emk_B 10 NKVIGKKVLIRLS-SGVDYKGILSCLDGYMNLALERTEEYVNGK 52 (75)
T ss_dssp HHTTTSEEEEECT-TSCEEEEEEEEECTTCEEEEEEEEEEETTE
T ss_pred HHhCCCeEEEEEc-CCcEEEEEEEEEcCcceEEEccEEEEecCC
Confidence 4679999999766 568999999999985542 344555553
No 114
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=24.73 E-value=49 Score=28.28 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=36.3
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCCCee---eeecCCccEEEec
Q 003359 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDEE---ILNLKKERWELIK 765 (827)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~sYd~~tk---kH~V~YDDGD~E---~L~L~~Ek~e~l~ 765 (827)
..++|++|.|+-- |.+-|.|++.+||.--. ...+.|+++... .+-+.-..+.++.
T Consensus 17 ~~~~~~~V~V~l~-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~lg~v~iRG~~I~~i~ 77 (81)
T 1i8f_A 17 QDSIGKQVLVKLR-DSHEIRGILRSFDQHVNLLLEDAEEIIDGNVYKRGTMVVRGENVLFIS 77 (81)
T ss_dssp HTTTTSEEEEEEG-GGEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEECGGGEEEEE
T ss_pred HHHCCCeEEEEEc-CCcEEEEEEEEEcCCCeeEEccEEEEcCCcccCCCEEEECCCEEEEEE
Confidence 5678999999766 57899999999998765 355556322222 2333455555554
No 115
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=23.76 E-value=53 Score=29.98 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=39.3
Q ss_pred EEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeecCCccEEEecCCCC
Q 003359 717 IKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIKGGSS 769 (827)
Q Consensus 717 VkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L~~Ek~e~l~~d~~ 769 (827)
|.|.=+....|+.|. .+|..-.+-++.|+||..+.+.|....+.+-.-|+.
T Consensus 9 iei~~~P~k~Y~vGE--~LDltGl~v~~~YsDgt~~~~~lt~~~v~VsGfDs~ 59 (98)
T 2l7y_A 9 IEVSQEPKKDYLVGD--SLDLSEGRFAVAYSNDTMEEHSFTDEGVEISGYDAQ 59 (98)
T ss_dssp EEECCCSCCEEETTT--CCCCCSCEEEEEETTSCEEEEESCCTTSEEESCCTT
T ss_pred EEEEcCCCcEEecCC--ccccCCCEEEEEEcCCCEEEEecccCCcEEEccCCC
Confidence 445555556677776 678888889999999999999998888887777665
No 116
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=22.87 E-value=4e+02 Score=32.47 Aligned_cols=195 Identities=11% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCC------cCchhhhhHHHHHHhhhcCCCCCCCchH
Q 003359 29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSD------MDVRLSVTSCISEITRITAPDSPYDDEL 102 (827)
Q Consensus 29 dELLKRLkkL~~eLs~lDQ~~vdS~~~SL~pl~k~LVs~~LLkHkD------kdVRayVAcCLADILRIyAPDAPYtDdq 102 (827)
.+.|..+-.|-++|...-.+...-|.+++-..--.+++..|-.|+| +=.++++.+|..-+|.+ ..++
T Consensus 774 ~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~-------~~~~ 846 (1023)
T 4hat_C 774 AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLEL-------PPAA 846 (1023)
T ss_dssp HHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTS-------CHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcC-------CHHH
Q ss_pred HHHHHHHHHHHhc-ccCCCCCcchHHHHHHHHHhhhhcceeeeccCC-----chHHHHHHHHHHHHHhhcCCchhHHHHH
Q 003359 103 MKEFFQLAVSAFE-NLSHASGRYYMKALSILDTVAKVRSCLLMLDLE-----CDKLVVEMFQHFLKVIRSNHPHFVFAAM 176 (827)
Q Consensus 103 LKDIF~LfV~qf~-~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDLe-----~ddLI~eLFktFFdiVr~~hp~kV~~~M 176 (827)
++.||.-++-.|+ .-.|....-..=-+.||++++..+ +-+ .......+++..|.++.+..-+..+..=
T Consensus 847 ~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~------~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~ 920 (1023)
T 4hat_C 847 FKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMG------NVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQ 920 (1023)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHC------SSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHH
Q ss_pred HHHHHHHhcccCC-----------------CcHHHHHHHHHHhhccCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHhc
Q 003359 177 ETIMTLVIDESED-----------------VSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSR 239 (827)
Q Consensus 177 ~dILs~VIeEsE~-----------------VP~eLLDvIL~~ll~~~ks~~PaAy~LA~~VI~~CadKLqp~I~q~l~S~ 239 (827)
..||..++.=.+. .....+..-|.+++...-.+. ....+.-++..+|+..
T Consensus 921 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp~~-------------~~~qi~~fv~~l~~~~ 987 (1023)
T 4hat_C 921 ALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHL-------------TSEQIASFLSALTKQC 987 (1023)
T ss_dssp HHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCTTS-------------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCcccccCCccccCCCCchHHHHHHHHHHHHHHhCCCC-------------CHHHHHHHHHHHHHcc
Q ss_pred CCCCchhHHHH
Q 003359 240 GIALDDYAEIV 250 (827)
Q Consensus 240 Gi~ld~Y~eIV 250 (827)
+ ....|...|
T Consensus 988 ~-~~~~f~~~l 997 (1023)
T 4hat_C 988 K-DLVVFKGTL 997 (1023)
T ss_dssp T-CHHHHHHHH
T ss_pred C-CHHHHHHHH
No 117
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=22.59 E-value=3e+02 Score=24.96 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=38.2
Q ss_pred cccccccCeEEEeeCCCCceEEEEEEEecCCCCe---EEE-EccCCCe----eeeecCCccEEEecCCCC
Q 003359 708 LNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKK---HRI-LYADGDE----EILNLKKERWELIKGGSS 769 (827)
Q Consensus 708 ~ge~lVG~RVkV~WP~D~~wY~G~V~sYd~~tkk---H~V-~YDDGD~----E~L~L~~Ek~e~l~~d~~ 769 (827)
.=..++|++|.|+--. .+-|.|++.+||.--.- -.+ .+.||+. ..+-+.-..+.++.....
T Consensus 20 lL~~~igk~V~V~Lk~-G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~ 88 (105)
T 4emh_A 20 LLNATQGRPILVELKN-GETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDE 88 (105)
T ss_dssp ------CCEEEEEETT-SCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC---
T ss_pred HHHHhCCCEEEEEECC-CCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHH
Confidence 3467799999997764 57899999999986653 223 3457852 356667788888876533
No 118
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=22.34 E-value=86 Score=34.44 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=32.2
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCC
Q 003359 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGD 750 (827)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD 750 (827)
.|.+|--.||.--+||.++|.+- +.++...|.|+|.+
T Consensus 460 ~~~~v~a~~p~tt~fy~a~v~~~-~~~~~~~~~f~~~~ 496 (522)
T 3mp6_A 460 PGTKVLARYPETTTFYPAIVIGT-KRDGTCRLRFDGEE 496 (522)
T ss_dssp TTCEEEEECTTCSEEEEEEEEEE-CTTSCEEEEETTC-
T ss_pred CCCEEEEECCCCcceEeEEEecC-CCCCeEEEEecCCC
Confidence 89999999999999999999994 66778889998654
No 119
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=22.15 E-value=74 Score=28.12 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=25.8
Q ss_pred ccccccCeEEEeeCCCCceEEEEEEEecCCCC
Q 003359 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK 740 (827)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~sYd~~tk 740 (827)
-..++|++|.|.-- +.+.|.|++.+||.--.
T Consensus 14 L~~~~~~~V~V~l~-~gr~~~G~L~~~D~~mN 44 (93)
T 4emg_A 14 VRLSLDEIVYVKLR-GDRELNGRLHAYDEHLN 44 (93)
T ss_dssp HHTTTTSEEEEEET-TTEEEEEEEEEECTTCC
T ss_pred HHHhCCCEEEEEEC-CCcEEEEEEEEECCccc
Confidence 35668999999875 67899999999998654
No 120
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=21.64 E-value=87 Score=27.10 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=27.6
Q ss_pred ccccccccCeEEEeeCCCCceEEEEEEEecCCCC
Q 003359 707 ALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK 740 (827)
Q Consensus 707 ~~ge~lVG~RVkV~WP~D~~wY~G~V~sYd~~tk 740 (827)
..=..++|++|.|.-- |.+.|.|++.+||.--.
T Consensus 7 ~~L~~~~~k~V~V~l~-~gr~~~G~L~~~D~~mN 39 (91)
T 1d3b_B 7 SKMLQHIDYRMRCILQ-DGRIFIGTFKAFDKHMN 39 (91)
T ss_dssp CCCGGGTTSEEEEEET-TCCEEEEEEEECCTTCC
T ss_pred HHHHHHcCCcEEEEEC-CCeEEEEEEEEECCCCe
Confidence 3446789999999886 67899999999998665
No 121
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=21.54 E-value=72 Score=27.16 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=37.1
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCCC-ee---eeecCCccEEEec
Q 003359 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGD-EE---ILNLKKERWELIK 765 (827)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~sYd~~tk---kH~V~YDDGD-~E---~L~L~~Ek~e~l~ 765 (827)
..++|++|.|.-- |.+-|.|++.+||.--. ...+.|..|. .. .+-+.-..+.++.
T Consensus 15 ~~~~~~~V~V~l~-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~ 76 (81)
T 1th7_A 15 AESLNNLVLVKLK-GNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILIS 76 (81)
T ss_dssp HHHTTSEEEEEET-TTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECGGGEEEEE
T ss_pred HHhCCCeEEEEEc-CCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECCCEEEEEE
Confidence 5679999999775 67899999999998766 4555555432 22 2334455555554
No 122
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=21.22 E-value=2.8e+02 Score=35.28 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=73.7
Q ss_pred hHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccCCchHHHHHHHHHHH
Q 003359 82 TSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFL 161 (827)
Q Consensus 82 AcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDLe~ddLI~eLFktFF 161 (827)
..+|+++|| |-|.+.+++..|..=|++.|..|.-.+=|.+-.+.-+|-+-..-+ .|| .=|..+|..++
T Consensus 174 li~l~~mFr----Dv~Ls~eel~~VV~Kv~~~l~~l~l~ElPpLvyQLLlLs~kg~k~-~IL-------~gl~~yF~~~~ 241 (1308)
T 3s51_A 174 MIQLTSVFK----DVCLTPEEMNLVVAKVLTMFSKLNLQEIPPLVYQLLVLSSKGSRR-SVL-------DGIIAFFRELD 241 (1308)
T ss_dssp HHHHHHHGG----GSCCCHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHTTSCHH-HHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCCHHHHHHHHHHHHHhhhcCChhhchHHHHHHHHHhcccchH-HHH-------HHHHHHHHHhh
Confidence 455667776 679999999999999999999999888898877777776555322 222 13455555554
Q ss_pred HHhh-----------cCCchh-HHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccC
Q 003359 162 KVIR-----------SNHPHF-VFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206 (827)
Q Consensus 162 diVr-----------~~hp~k-V~~~M~dILs~VIeEsE~VP~eLLDvIL~~ll~~~ 206 (827)
.-.+ ..+|.+ ++..-.+||-.|-- +-...+++...+|..|....
T Consensus 242 ~~~~~~~~~~~~~d~~~~s~~elr~vEgTVL~HI~~-Aik~D~~Lgre~LK~~K~~~ 297 (1308)
T 3s51_A 242 KQHREEQSSDELSELITAPADELYHVEGTVILHIVF-AIKLDCELGRELLKHLKAGQ 297 (1308)
T ss_dssp HHHHHHHCC-------CCSHHHHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHCCSS
T ss_pred hhcchhccCCcccccccCCHHHHHHHHHHHHHHHHH-HHHcCHHHHHHHHHHHhhhc
Confidence 3211 124434 44444566655522 22578888899998887654
No 123
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=21.19 E-value=3.4e+02 Score=24.84 Aligned_cols=105 Identities=13% Similarity=0.163 Sum_probs=54.7
Q ss_pred hhccCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHH-HHHH-hcccCCCCCcchHHHHHHHHHhhhhcceeeec
Q 003359 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQL-AVSA-FENLSHASGRYYMKALSILDTVAKVRSCLLML 145 (827)
Q Consensus 68 ~LLkHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~L-fV~q-f~~LaD~ssp~F~q~~yLLEsLAeVKS~VLml 145 (827)
.+|.+.|..||..++.||..|..- +++....|+.. .+.. +..|.+.+...-......|.+|+.-..-.
T Consensus 61 ~lL~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--- 130 (210)
T 4db6_A 61 QLLSSPNEQILQEALWALSNIASG-------GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--- 130 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTS-------CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH---
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcC-------CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHH---
Confidence 567788999999999999998742 22332333221 1222 23344444333444566777766321000
Q ss_pred cCCchHHH-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcc
Q 003359 146 DLECDKLV-VEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186 (827)
Q Consensus 146 DLe~ddLI-~eLFktFFdiVr~~hp~kV~~~M~dILs~VIeE 186 (827)
...++ ...+..++..++.. ...|......+|..+...
T Consensus 131 ---~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 131 ---IQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASG 168 (210)
T ss_dssp ---HHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS
T ss_pred ---HHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence 01111 12445555555544 445666666666666654
No 124
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=20.73 E-value=92 Score=28.51 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=29.1
Q ss_pred ccccCeEEEeeCC---CCceEEEEEEEecCCC-------CeEEEEcc
Q 003359 711 QLVGSRIKVWWPM---DETFYKGVVDNYDPIK-------KKHRILYA 747 (827)
Q Consensus 711 ~lVG~RVkV~WP~---D~~wY~G~V~sYd~~t-------kkH~V~YD 747 (827)
=.+|-+|-+|+++ ...+|++.|......+ -...|.|.
T Consensus 20 f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~ 66 (101)
T 3m9q_A 20 FHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQ 66 (101)
T ss_dssp CCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEET
T ss_pred ccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeC
Confidence 3489999999986 5789999999886532 25778885
No 125
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=20.70 E-value=9.8e+02 Score=27.30 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=44.9
Q ss_pred cCCCcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHhccc-------CCCCCc---chHHHHHHHHHhhhhc
Q 003359 71 RRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENL-------SHASGR---YYMKALSILDTVAKVR 139 (827)
Q Consensus 71 kHkDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~LfV~qf~~L-------aD~ssp---~F~q~~yLLEsLAeVK 139 (827)
.+.|.++.-.+..|+-=|+|+..+..|...++...+++++-...... .+++.+ ...+.+-+|.+||...
T Consensus 492 ~~~d~~l~~~~~s~lwa~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lrv~~ig~Lg~LA~~~ 570 (684)
T 4gmo_A 492 DSADLKLATQVTSLAWAVARVLHGETPTDGNPHRKFISLYHSSKQQAGGNSNSIEEPEDPFQGLGVKCIGVVGSLAHDP 570 (684)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHGGGSCCTTCHHHHHHHHHHHHTTC-------------CTTSHHHHHHHHHHHHTSTT
T ss_pred ccccHHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHHHHHHHhcCCC
Confidence 35566666666678999999999998888777777777765554321 223333 3456788888887653
No 126
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=20.44 E-value=8.3e+02 Score=26.40 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=38.0
Q ss_pred hccCC-CcCchhhhhHHHHHHhhhcCCCCCCCchHHHHHHHH-HHHH-hcccCCCCCcchHHHHHHHHHhhh
Q 003359 69 LLRRS-DMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQL-AVSA-FENLSHASGRYYMKALSILDTVAK 137 (827)
Q Consensus 69 LLkHk-DkdVRayVAcCLADILRIyAPDAPYtDdqLKDIF~L-fV~q-f~~LaD~ssp~F~q~~yLLEsLAe 137 (827)
||.+. +..||..+|.||..|..- ++++.+.|... .|.. +..|.+++...-.+....|.+||.
T Consensus 108 lL~~~~~~~lq~~Aa~aL~nias~-------~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 108 FLGKTDCSPIQFESAWALTNIASG-------TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHHTS-------CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHhcC-------CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 56554 478999999999998743 45566655542 2222 223444444455556777777763
No 127
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=20.31 E-value=1.8e+02 Score=27.53 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=26.4
Q ss_pred cCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCC
Q 003359 714 GSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADG 749 (827)
Q Consensus 714 G~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDG 749 (827)
|..|+|+= ....||.|+|+.+. ...-.|.|++.
T Consensus 5 ~~~VEV~~-~~G~~y~a~V~~v~--~d~~~V~f~n~ 37 (128)
T 3h8z_A 5 GLPVEVRG-SNGAFYKGFVKDVH--EDSVTIFFENN 37 (128)
T ss_dssp TCEEEEEC-TTSCEEEEEEEEEC--SSEEEEEETTC
T ss_pred ccEEEEec-CCCCEEEEEEEEEe--CCcEEEEEccc
Confidence 56678866 56899999999985 57799999863
No 128
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=20.22 E-value=2.5e+02 Score=33.63 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=16.1
Q ss_pred CchHHHHHHHHHHHHhc
Q 003359 99 DDELMKEFFQLAVSAFE 115 (827)
Q Consensus 99 tDdqLKDIF~LfV~qf~ 115 (827)
|++|+.-||.-+++.|.
T Consensus 226 t~~q~~~iFt~~lr~l~ 242 (799)
T 1vsy_4 226 TDDQMTFMFNRLQGHLR 242 (799)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 78999999999999998
No 129
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=20.16 E-value=81 Score=27.94 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=26.2
Q ss_pred ccccccCeEEEeeCCCCceEEEEEEEecCCCC
Q 003359 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK 740 (827)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~sYd~~tk 740 (827)
-..++|++|.|.-- |.+-|.|++.+||.--.
T Consensus 15 L~~~i~k~V~V~Lk-~gr~~~G~L~~fD~~mN 45 (96)
T 3bw1_A 15 LKLNLDERVYIKLR-GARTLVGTLQAFDSHCN 45 (96)
T ss_dssp HGGGTTSEEEEEEG-GGCEEEEEEEEECTTCC
T ss_pred HHHHCCCeEEEEEC-CCcEEEEEEEEECCCCc
Confidence 35789999999886 56799999999998665
No 130
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.05 E-value=2e+02 Score=31.06 Aligned_cols=73 Identities=23% Similarity=0.246 Sum_probs=38.5
Q ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCcCchhhhhHHHHHH
Q 003359 9 ELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88 (827)
Q Consensus 9 ele~~l~~~G~kLi~~piS~dELLKRLkkL~~eLs~lDQ~~vdS~~~SL~pl~k~LVs~~LLkHkDkdVRayVAcCLADI 88 (827)
.+++.+.+-|-..+.+ |.+|...|..+=++... .+.+-...++-+.+..+.+.+- ||++..|.+--|
T Consensus 181 ~~~e~~~~~~L~~l~~----------~~~l~~~L~~~l~~~~~--~~~i~~wik~n~~~~~~~~~~f-ir~L~t~v~~~~ 247 (364)
T 3l6a_A 181 RMLEILEGKGLSFLFP----------LLKLEKELLKQIKLDPS--PQTIYKWIKDNISPKLHVDKGF-VNILMTSFLQYI 247 (364)
T ss_dssp HHHHHHHHHTCGGGCH----------HHHHHHHHHHHHHHCCC--HHHHHHHHHHHSCHHHHTCHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccCC----------HHHHHHHHHHHHHcCCC--hHHHHHHHHHhCCcccCCCHHH-HHHHHHHHHHHH
Confidence 4556666655544321 23444444444332222 3455556667677766665554 677766666666
Q ss_pred hhhcCC
Q 003359 89 TRITAP 94 (827)
Q Consensus 89 LRIyAP 94 (827)
.+-..|
T Consensus 248 ~~~~~~ 253 (364)
T 3l6a_A 248 SSEVNP 253 (364)
T ss_dssp HHHHC-
T ss_pred HHhccc
Confidence 555444
No 131
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=20.04 E-value=2.8e+02 Score=34.22 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHH---HHhcccCCCcHHHHHHHHHHhhccC------------CCCChhhHH
Q 003359 151 KLVVEMFQHFLKVIRSNHPHFVFAAMETIMT---LVIDESEDVSWDLLRILLASVRKEN------------QDVSPTSWK 215 (827)
Q Consensus 151 dLI~eLFktFFdiVr~~hp~kV~~~M~dILs---~VIeEsE~VP~eLLDvIL~~ll~~~------------ks~~PaAy~ 215 (827)
.++..||+.++.+ ...+|. +......++. ..+......=..||..||..|.... +....+|..
T Consensus 529 ~~~~~Ll~~ll~~-~~~~p~-l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~ 606 (1204)
T 3a6p_A 529 NDGIELLQMVLNF-DTKDPL-ILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACS 606 (1204)
T ss_dssp HHHHHHHHHHHHC-CCSCHH-HHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCChH-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHH
Confidence 5677777776553 345665 4443333333 3333221222334555555543210 111222333
Q ss_pred HHHHHHhhchHHHHHHHHHHHH
Q 003359 216 LGEKVFTKCAAKLKTNLKEAVQ 237 (827)
Q Consensus 216 LA~~VI~~CadKLqp~I~q~l~ 237 (827)
.-..+|..|.+.|.||+.++++
T Consensus 607 al~~L~~~~~~~L~p~~~~i~~ 628 (1204)
T 3a6p_A 607 SIIKMCRDYPQLVLPNFDMLYN 628 (1204)
T ss_dssp HHHHHHHHCHHHHGGGHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3347899999998888776555
Done!