BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003360
(826 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6ZZZ8|CAF4_YEAS7 CCR4-associated factor 4 OS=Saccharomyces cerevisiae (strain
YJM789) GN=CAF4 PE=3 SV=2
Length = 645
Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 237 QSHSKVKNLFITGHSDGAINFWD--VSCPLFLLILSLKQQSEK-------DFSLSGIPLT 287
Q K N+ ITG D + WD +S L+L LK+++E+ +F L +T
Sbjct: 371 QIDKKNYNMLITGSKDATLKLWDLNLSRELYLDHSPLKEKTEEIVTPCIHNFELHKDEIT 430
Query: 288 ALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK----VM 343
AL +D S LVSG + + + L I+ L FT + S+ ++
Sbjct: 431 ALSFD--SEALVSGSRDKKIFHWDLT-TGKCIQQLDLIFTPTHSDIKMPARSLNNGTCLL 487
Query: 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE--GPTVLYQKHIASDISSGIVSLQFET 401
+I NS LA G+ G V L D P L + H + GI SL+F++
Sbjct: 488 GTEAPMIGALQCYNSA-LATGTKDGLVRLWDLRVGKPVRLLEGH-----TDGITSLKFDS 541
Query: 402 CSLQGFEKNFLVIATKDSSVLVLD 425
EK LV + D+SV + D
Sbjct: 542 ------EK--LVTGSMDNSVRIWD 557
>sp|B1ANS9|WDR64_HUMAN WD repeat-containing protein 64 OS=Homo sapiens GN=WDR64 PE=2 SV=1
Length = 1081
Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304
+ +T H DG + W + L +L + S I LT+LY D +R+L++G+
Sbjct: 784 ILVTAHEDGHLRLWTLEGRLLKDMLPFTKHS-------AISLTSLYTDSCTRILLAGNVE 836
Query: 305 GMV 307
G V
Sbjct: 837 GHV 839
>sp|P36130|CAF4_YEAST CCR4-associated factor 4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CAF4 PE=1 SV=3
Length = 643
Score = 37.7 bits (86), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 32/204 (15%)
Query: 237 QSHSKVKNLFITGHSDGAINFWD--VSCPLFLLILSLKQQSEK-------DFSLSGIPLT 287
Q K N+ ITG D + WD +S ++L LK+++E+ +F L +T
Sbjct: 369 QIDKKNYNMLITGSKDATLKLWDLNLSREIYLDHSPLKEKTEEIVTPCIHNFELHKDEIT 428
Query: 288 ALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS----KKGNSHIIHSVKVM 343
AL +D S LVSG + + + L I+ L FT + K + + ++
Sbjct: 429 ALSFD--SEALVSGSRDKKIFHWDLT-TGKCIQQLDLIFTPTHSDIKMPARSLNNGACLL 485
Query: 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE--GPTVLYQKHIASDISSGIVSLQFET 401
+I NS LA G+ G V L D P L + H + GI SL+F++
Sbjct: 486 GTEAPMIGALQCYNSA-LATGTKDGIVRLWDLRVGKPVRLLEGH-----TDGITSLKFDS 539
Query: 402 CSLQGFEKNFLVIATKDSSVLVLD 425
EK LV + D+SV + D
Sbjct: 540 ------EK--LVTGSMDNSVRIWD 555
>sp|Q9D565|WDR64_MOUSE WD repeat-containing protein 64 OS=Mus musculus GN=Wdr64 PE=2 SV=2
Length = 1086
Score = 37.0 bits (84), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304
L ++ H DG + W + L +L + S I LT+LY D RVL++G+
Sbjct: 782 LLVSAHEDGHLRLWTLEGKLIKDMLPFTKHS-------AISLTSLYTDSCCRVLLAGNVE 834
Query: 305 GMV 307
G V
Sbjct: 835 GHV 837
>sp|O60161|UTP4_SCHPO U3 small nucleolar RNA-associated protein 4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=utp4 PE=3 SV=1
Length = 710
Score = 37.0 bits (84), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 347 GSIISLNMNRNSQHLAVGSDQGYVYLLD-TEGPTVLYQKHIASDISSGIVSLQFETCSLQ 405
G+I S+ + ++ LAVG D G L D + GP V+ K + +S I+SL F+T
Sbjct: 111 GAIWSIAICDETKTLAVGCDDGSCVLFDISGGPGVIEFKRVLMRQTSRILSLDFQT---- 166
Query: 406 GFEKNFLVIATKDSSVLVLD--SDNGNMLSTNLI-HPKKPSRALFMQILNGQDGLARGAN 462
K+ LV D + V D + N ++S + +K AL + + +DG A+
Sbjct: 167 ---KDHLVGGCADGVIKVWDLSTPNSAIISRMQVDRARKGEAALIWAVKSLRDGTIVSAD 223
Query: 463 LSNVAGMNKG 472
S G
Sbjct: 224 SSGAVKFWNG 233
Score = 33.9 bits (76), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300
+ K+ + G +DG I WD+S P +I ++ + + I DGT +VS
Sbjct: 165 QTKDHLVGGCADGVIKVWDLSTPNSAIISRMQVDRARKGEAALIWAVKSLRDGT---IVS 221
Query: 301 GDQSGMVRIFKLKY 314
D SG V+ + K+
Sbjct: 222 ADSSGAVKFWNGKF 235
>sp|Q9Y2K9|STB5L_HUMAN Syntaxin-binding protein 5-like OS=Homo sapiens GN=STXBP5L PE=2
SV=2
Length = 1186
Score = 36.2 bits (82), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 235 GSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK-------------QQSEKDFSL 281
G+Q++ ++ ITGH+DG+I FWD S ++ LK +Q+ +
Sbjct: 456 GAQTYPEI---IITGHADGSIKFWDASAITLQMLYKLKTSKVFEKQKVGEGKQTCEIVEE 512
Query: 282 SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 326
+ +Y+ SR+ S V I+ K+ H I +S
Sbjct: 513 DPFAIQMIYWCPESRIFCVSGVSAYVIIY--KFSRHEITTEIVSL 555
>sp|Q9WU70|STXB5_RAT Syntaxin-binding protein 5 OS=Rattus norvegicus GN=Stxbp5 PE=1 SV=1
Length = 1152
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 235 GSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK 272
G+QS+ ++ ITGH+DG+I FWD S ++ LK
Sbjct: 444 GAQSYPEI---IITGHADGSIKFWDASAITLQVLYKLK 478
>sp|Q75002|POL_HV1ET Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag-pol PE=3 SV=3
Length = 1439
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 64 LNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQ-IVLLNEQTESRTTKLAL 122
+ L Y+L+K PI+ ++ Y DG A+R +G + +V+ Q IV L E T +T A+
Sbjct: 1014 VKLWYQLEKEPIAGVETFYVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAI 1073
Query: 123 PLS 125
L+
Sbjct: 1074 QLA 1076
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 64 LNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQ-IVLLNEQTESRTTKLAL 122
+ L Y+L+K PI+ + Y DG A+R MG + +V+ Q IV + E T +T A+
Sbjct: 1006 VKLWYQLEKEPIAGAETFYVDGAANREIKMGKAGYVTDRGRQKIVSITETTNQKTELQAI 1065
Query: 123 PLS 125
L+
Sbjct: 1066 QLA 1068
>sp|Q6ZMW3|EMAL6_HUMAN Echinoderm microtubule-associated protein-like 6 OS=Homo sapiens
GN=EML6 PE=2 SV=2
Length = 1958
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 33/159 (20%)
Query: 238 SHSKVKNLFITGHSDGAINFW-DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR 296
S+ ++++L +G + G I W D+ LL+ ++K P+ A+Y +
Sbjct: 870 SYGRMEDLVFSGAATGDIFIWKDI-----LLLKTVKAHDG--------PVFAMY--ALDK 914
Query: 297 VLVSGDQSGMVRIFKLKYE----PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISL 352
V+G + G+V ++ +E +AI+ S LS S KG +++ N SI ++
Sbjct: 915 GFVTGGKDGIVELWDDMFERCLKTYAIKRSALS--TSSKG--------LLLEDNPSIRAI 964
Query: 353 NMNRNSQHLAVGSDQGYVYLLDTEGP-TVLYQKHIASDI 390
+ H+ VG+ G + +D GP T+L Q H+ ++
Sbjct: 965 TLGHG--HILVGTKNGEILEIDKSGPMTLLVQGHMEGEV 1001
>sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 64 LNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLA-- 121
+ L Y+L+K PI + Y DG ASR +G + +V+ Q V+ T ++ T+L
Sbjct: 1022 VKLWYQLEKEPIVGAETFYVDGAASRETKLGKAGYVTNRGRQKVVTLTHTTNQKTELQAI 1081
Query: 122 -LPLSEPCIDMEIISSS 137
L L + +++ I++ S
Sbjct: 1082 HLALQDSGLEVNIVTDS 1098
>sp|Q9P783|RRB1_SCHPO Ribosome assembly protein rrb1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rrb1 PE=1 SV=1
Length = 480
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKL 70
H V W + + +A G NG +W V + +LK+ + TP+ +K
Sbjct: 335 HPGVDVNVLSWNTRVPNLLATGADNG---VWSVWDLRSLKS--SSSVATPVAS----FKW 385
Query: 71 DKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTK 119
+ PI S++W + S + ++GA + +S+ L + L E+ +SR +
Sbjct: 386 HRAPIYSIEW--HPNEDSVIGVVGADNQISLWDLSVELDEEEQDSRAAE 432
>sp|Q5SQM0|EMAL6_MOUSE Echinoderm microtubule-associated protein-like 6 OS=Mus musculus
GN=Eml6 PE=2 SV=1
Length = 1958
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 33/159 (20%)
Query: 238 SHSKVKNLFITGHSDGAINFW-DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR 296
S+ ++++L +G + G I W DV LL+ ++K P+ A+Y +
Sbjct: 870 SYGRMEDLVFSGAATGDIFIWKDV-----LLLKTVKAHDG--------PVFAMY--ALDK 914
Query: 297 VLVSGDQSGMVRIFKLKYE----PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISL 352
V+G + G+V ++ +E +AI+ + LS S KG +++ N SI ++
Sbjct: 915 GFVTGGKDGIVELWDDMFERCLKTYAIKRTALS--TSSKG--------LLLEDNPSIRAI 964
Query: 353 NMNRNSQHLAVGSDQGYVYLLDTEGP-TVLYQKHIASDI 390
+ H+ VG+ G + +D GP T+L Q H+ ++
Sbjct: 965 TLGHG--HILVGTKNGEILEIDKSGPMTLLVQGHMEGEV 1001
>sp|Q8K400|STXB5_MOUSE Syntaxin-binding protein 5 OS=Mus musculus GN=Stxbp5 PE=1 SV=3
Length = 1152
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 235 GSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK 272
G+QS+ ++ ITGH+DG++ FWD S ++ LK
Sbjct: 444 GAQSYPEI---IITGHADGSVKFWDASAITLQVLYKLK 478
>sp|Q5T5C0|STXB5_HUMAN Syntaxin-binding protein 5 OS=Homo sapiens GN=STXBP5 PE=1 SV=1
Length = 1151
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 235 GSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK 272
G+QS+ ++ ITGH+DG++ FWD S ++ LK
Sbjct: 443 GAQSYPEI---IITGHADGSVKFWDASAITLQVLYKLK 477
>sp|Q5SQE2|STB5L_DANRE Syntaxin-binding protein 5-like OS=Danio rerio GN=stxbp5l PE=3 SV=1
Length = 1159
Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 235 GSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK 272
GSQ++ ++ ITGH+DG+I FWD + ++ LK
Sbjct: 457 GSQTYPEI---IITGHADGSIKFWDATAITLQMLYKLK 491
>sp|Q5DQR4|STB5L_MOUSE Syntaxin-binding protein 5-like OS=Mus musculus GN=Stxbp5l PE=1
SV=1
Length = 1185
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 235 GSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQS--EKDFSLSG--------- 283
G+Q++ ++ ITGH+DG I FWD S ++ LK EK + G
Sbjct: 455 GAQTYPEI---IITGHADGTIKFWDASAMTLQMLYKLKTSKVFEKQKAGEGKQTCELVEE 511
Query: 284 --IPLTALYYDGTSRVLVSGDQSGMVRIFKL 312
+ +Y+ SR+ S V I+K
Sbjct: 512 DPFAVQMIYWCPESRIFCVSGVSAYVIIYKF 542
>sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 64 LNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQ-IVLLNEQTESRT--TKL 120
+ L Y+L+K PI + Y DG ASR +G + +V+ Q +V L + T +T +
Sbjct: 1022 VKLWYQLEKEPIVGAETFYVDGAASRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAI 1081
Query: 121 ALPLSEPCIDMEIISSS 137
L L + +++ I++ S
Sbjct: 1082 HLALQDSGLEVNIVTDS 1098
>sp|Q54D08|LST8_DICDI Protein LST8 homolog OS=Dictyostelium discoideum GN=lst8 PE=1 SV=1
Length = 304
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 248 TGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMV 307
TG DG + WD+ P ++D+ S P+ + L+SGDQ+G +
Sbjct: 93 TGSEDGTVKIWDLKAP----------GCQRDYECSA-PVNTVVLHPNQAELISGDQNGSI 141
Query: 308 RIFKL 312
R++ L
Sbjct: 142 RVWDL 146
>sp|Q55BM1|Y0444_DICDI Probable inactive protein kinase DDB_G0270444 OS=Dictyostelium
discoideum GN=DDB_G0270444 PE=1 SV=1
Length = 1360
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGI------PLTALYYDGTSRVL 298
+ ++G DG I W V L + + Q +++GI +TAL +D T+ ++
Sbjct: 127 MLLSGGMDGTIRLWQVETGSLLAVYN---QDISKVTMNGIIDTTSAGITALTFDPTNLLV 183
Query: 299 VSGDQSGMVRIFKLK 313
+SG G+VR L+
Sbjct: 184 ISGTSDGIVRKHSLR 198
>sp|Q8N157|AHI1_HUMAN Jouberin OS=Homo sapiens GN=AHI1 PE=1 SV=1
Length = 1196
Score = 34.3 bits (77), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL 298
H V+ L +TG D I W V IL + K F + +L +D +
Sbjct: 706 HPAVRELVVTGCYDSMIRIWKVEMREDSAILVRQFDVHKSF------INSLCFDTEGHHM 759
Query: 299 VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIIS-LNMNRN 357
SGD +G++ ++ + + +E+S +T +K+ +K + G IS L ++ N
Sbjct: 760 YSGDCTGVIVVWNTYVKINDLEHSVHHWTINKE--------IKETEFKGIPISYLEIHPN 811
Query: 358 SQHLAVGSDQGYVYLLD 374
+ L + + + ++D
Sbjct: 812 GKRLLIHTKDSTLRIMD 828
>sp|P08111|L2GL_DROME Lethal(2) giant larvae protein OS=Drosophila melanogaster GN=l(2)gl
PE=1 SV=2
Length = 1161
Score = 34.3 bits (77), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 240 SKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQ----SEKDF 279
+K+ + +TGH DG++ FWD + L I + K SE DF
Sbjct: 432 TKLYEILLTGHEDGSVKFWDCTGVLLKPIYNFKTSSIFGSESDF 475
>sp|Q12220|UTP12_YEAST U3 small nucleolar RNA-associated protein 12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DIP2 PE=1
SV=1
Length = 943
Score = 34.3 bits (77), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 19/88 (21%)
Query: 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300
K +L G++DG I WD+ LL +F+ +T L +DGT L+S
Sbjct: 89 KDTDLLAVGYADGVIKVWDLMSKTVLL----------NFNGHKAAITLLQFDGTGTRLIS 138
Query: 301 G---------DQSGMVRIFKLKYEPHAI 319
G D G V ++KL+ +I
Sbjct: 139 GSKDSNIIVWDLVGEVGLYKLRSHKDSI 166
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 64 LNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQ-IVLLNEQTESRTTKLAL 122
+ L Y+L+K PI+ + Y DG A+R +G + +V+ Q +V L E T +T A+
Sbjct: 1003 VKLWYQLEKDPIAGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI 1062
Query: 123 PLS 125
L+
Sbjct: 1063 HLA 1065
>sp|P38163|SRO77_YEAST Lethal(2) giant larvae protein homolog SRO77 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRO77 PE=1
SV=2
Length = 1010
Score = 34.3 bits (77), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 52/267 (19%), Positives = 115/267 (43%), Gaps = 38/267 (14%)
Query: 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFS-LSGIPLTALYYDGTSRVLV 299
+ ++ +TGHS+G++ WD S + + K + + + + + + + L
Sbjct: 471 ETRSALLTGHSNGSVRIWDASHSEVTDNAVFEVNTAKVLNRATNLAIKNISFASETLELA 530
Query: 300 SGDQSGMVRIFK-----------------LKYEPHAIENS-FLSFTGSKKGNSHI----I 337
+ G V +FK LK+ ++++S + S +G +++ I
Sbjct: 531 VSSEVGDVILFKFETNKFYGQLPKSDALQLKFSRFSLDDSKTILVDVSDRGPTNVKQGFI 590
Query: 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH---IASDISSGI 394
S + G++ ++ MN N +AVG +G + +LD GP +++ ++ I+ SS +
Sbjct: 591 PSTVIHAKKGAVSAI-MNSNIGFVAVGFIEGTLIILDRRGPAIIFNENIRVISKAGSSYV 649
Query: 395 VSLQFETCSLQ----GFEKNFLVIATKDSSVL---VLDSDNGN--MLSTNLIHPKKPSRA 445
++ F C ++ GF ++ T ++ +L + NG + T+ +
Sbjct: 650 STVHF--CVMEYGDDGFSSILMLCGTDIGELMTFKILPATNGRFEVKFTDATKTNNQGKI 707
Query: 446 LFMQILNGQDGLARGANLSNVAGMNKG 472
L + G + A +S + G++KG
Sbjct: 708 LGINSFAKDTGYSCSATISKMQGLSKG 734
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 34.3 bits (77), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 64 LNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQ-IVLLNEQTESRT--TKL 120
+ L Y+L+ PI + Y DG A+R MG + +V+ Q IV L E T +T +
Sbjct: 1011 VKLWYQLETEPIEGAETYYVDGAANRETKMGKAGYVTDRGKQKIVSLTETTNQKTELQAI 1070
Query: 121 ALPLSEPCIDMEIISSS 137
L L E ++ I++ S
Sbjct: 1071 YLALQESGPEVNIVTDS 1087
>sp|P04585|POL_HV1H2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 33.9 bits (76), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 64 LNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQ-IVLLNEQTESRT--TKL 120
+ L Y+L+K PI + Y DG A+R +G + +V+ Q +V L + T +T +
Sbjct: 1010 VKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAI 1069
Query: 121 ALPLSEPCIDMEIISSS 137
L L + +++ I++ S
Sbjct: 1070 YLALQDSGLEVNIVTDS 1086
>sp|Q5E9I7|MEP50_BOVIN Methylosome protein 50 OS=Bos taurus GN=WDR77 PE=2 SV=1
Length = 342
Score = 33.5 bits (75), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG-IPLTALYYDGTSRVLVSGD 302
++F++ D I WD CP K S+ S SG +P + ++ S V V GD
Sbjct: 181 SVFLSCGEDNRILLWDTRCP--------KPASQMGCSASGYLPTSLTWHPQQSEVFVFGD 232
Query: 303 QSGMVRIFKLK 313
++G V + K
Sbjct: 233 ENGTVSLVDTK 243
>sp|Q13610|PWP1_HUMAN Periodic tryptophan protein 1 homolog OS=Homo sapiens GN=PWP1 PE=1
SV=1
Length = 501
Score = 33.5 bits (75), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 41/237 (17%)
Query: 242 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301
++N+ + +D + WD+S L SL ++K +L P A + L+SG
Sbjct: 268 IRNVLASASADNTVILWDMS--LGKPAASLAVHTDKVQTLQFHPFEA-------QTLISG 318
Query: 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-H 360
V ++ + SH ++ + +G I + N S H
Sbjct: 319 SYDKSVALYDCR----------------SPDESH-----RMWRFSGQIERVTWNHFSPCH 357
Query: 361 LAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGI-VSLQFETC----SLQGFEKNFLVIA 415
+D G+VY LD ++ + +D SG+ +S Q + C S + K + ++
Sbjct: 358 FLASTDDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQIKGCLVTASADKYVKIWDILG 417
Query: 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKG 472
+ S V D G + ++ P P F+ GQ R ++S V+ +N+
Sbjct: 418 DRPSLVHSRDMKMGVLFCSSCC-PDLP----FIYAFGGQKEGLRVWDISTVSSVNEA 469
>sp|O14053|YC47_SCHPO Uncharacterized WD repeat-containing protein C1672.07
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC1672.07 PE=4 SV=1
Length = 902
Score = 33.5 bits (75), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 84/194 (43%), Gaps = 44/194 (22%)
Query: 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 303
N + G S G ++ +++ +K++S SLSG P+TA+ D +R+LV+
Sbjct: 457 NFGLIGSSKGVVDVYNMQS-------GIKRKSFGQSSLSGKPVTAVMLDNVNRILVTASL 509
Query: 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL-A 362
G+++ + KGN +I S+ V GS I+ + ++S L A
Sbjct: 510 DGILKFWDF-----------------NKGN--LIDSLDV----GSSITHAIYQHSSDLVA 546
Query: 363 VGSDQGYVYLLDTEGPTVLYQ--KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420
V D + ++D + ++ + H S+ + S F +LV A+ D +
Sbjct: 547 VACDDFGIRIVDVQTRKIVRELWGH-----SNRLTSFDFSDTG------RWLVTASLDGT 595
Query: 421 VLVLDSDNGNMLST 434
+ D G+++ +
Sbjct: 596 IRTWDLPTGHLIDS 609
>sp|Q6GPP0|WDR70_XENLA WD repeat-containing protein 70 OS=Xenopus laevis GN=wdr70 PE=2
SV=2
Length = 622
Score = 33.5 bits (75), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 229 ETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSE--KDFSLSGIPL 286
T + +G H K+K F+T +DG + WDVS + K+ K S+ G P+
Sbjct: 250 HTAMLNGGCWHPKIKEEFMTCSNDGTVRTWDVS--------NEKKHKGIFKPRSVQGKPV 301
Query: 287 --TALYYDGTSRVLVSGDQSGMVRIFKLKYEPH 317
T Y + + +G Q G ++I+ H
Sbjct: 302 IPTCCTYSRDGKFIAAGCQDGSIQIWDRNMSVH 334
>sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag-pol PE=1 SV=3
Length = 1439
Score = 33.5 bits (75), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 64 LNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVL-----LNEQTESRTT 118
+ L Y+L+K PI + Y DG A+R +G + +V+ Q V+ N++TE +
Sbjct: 1014 VKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAI 1073
Query: 119 KLALPLSEPCIDMEIISSS 137
LA L + +++ I++ S
Sbjct: 1074 HLA--LQDSGLEVNIVTDS 1090
>sp|Q2HJ56|PWP1_BOVIN Periodic tryptophan protein 1 homolog OS=Bos taurus GN=PWP1 PE=2
SV=1
Length = 500
Score = 33.5 bits (75), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 93/237 (39%), Gaps = 41/237 (17%)
Query: 242 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301
V+N+ + +D + WD+S L SL ++K +L P A + L+SG
Sbjct: 267 VRNVLASASADNTVILWDMS--LGKPAASLAVHTDKVQTLQFHPFEA-------QTLISG 317
Query: 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-H 360
V ++ + SH ++ + +G I + N S H
Sbjct: 318 SYDKSVALYDCR----------------SPEESH-----RMWRFSGQIERVTWNHFSPCH 356
Query: 361 LAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGI-VSLQFETC----SLQGFEKNFLVIA 415
+D G+VY LD ++ + +D SG+ +S Q + C S + K + ++
Sbjct: 357 FLASTDDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQIKGCLVTASADKYVKIWDILG 416
Query: 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKG 472
+ S V D G + ++ P P F+ GQ R ++S V+ +N+
Sbjct: 417 DRPSLVHSRDMKMGVLFCSSCC-PDLP----FIYAFGGQKEGLRVWDISTVSSVNEA 468
>sp|Q6NV31|WDR82_DANRE WD repeat-containing protein 82 OS=Danio rerio GN=wdr82 PE=2 SV=1
Length = 313
Score = 33.5 bits (75), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 43/169 (25%)
Query: 238 SHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 297
S S V + FI+G D I WD+ P + L G P+ + +D +
Sbjct: 114 SMSPVDDTFISGSLDKTIRLWDLRSP----------NCQGLMHLQGKPVCS--FDPEGLI 161
Query: 298 LVSGDQSGMVRI-------------FKLKYEPHAIENSFLSFTGSKK--------GNSHI 336
+G S MV++ FKL+YE E + L F+ K G +
Sbjct: 162 FAAGVNSEMVKLYDLRSFDKGPFATFKLQYE-RTCEWTGLKFSNDGKLILVSTNGGTLRV 220
Query: 337 IHSVKVMKIN---------GSIISLNMNRNSQHLAVGSDQGYVYLLDTE 376
+ + K ++ G I+ + +SQ + +GS+ G +++ + E
Sbjct: 221 LDAFKGAVLHSFGGYNNSKGVILEASFTPDSQFIMIGSEDGKIHVWNAE 269
>sp|P0C6F2|POL_HV1LW Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate LW123) GN=gag-pol PE=1 SV=1
Length = 1435
Score = 33.1 bits (74), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 64 LNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLA-- 121
+ L Y+L+K PI + Y DG A+R +G + +V+ Q V+ T ++ T+L
Sbjct: 1010 VKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAI 1069
Query: 122 -LPLSEPCIDMEIISSS 137
L L + +++ I++ S
Sbjct: 1070 YLALQDSGLEVNIVTDS 1086
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 33.1 bits (74), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 64 LNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLA-- 121
+ L Y+L+K PI + Y DG A+R +G + +V+ Q V+ T ++ T+L
Sbjct: 1022 VKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAI 1081
Query: 122 -LPLSEPCIDMEIISSS 137
L L + +++ I++ S
Sbjct: 1082 YLALQDSGLEVNIVTDS 1098
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 292,897,811
Number of Sequences: 539616
Number of extensions: 12214157
Number of successful extensions: 35680
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 149
Number of HSP's that attempted gapping in prelim test: 35435
Number of HSP's gapped (non-prelim): 371
length of query: 826
length of database: 191,569,459
effective HSP length: 126
effective length of query: 700
effective length of database: 123,577,843
effective search space: 86504490100
effective search space used: 86504490100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)