Query 003360
Match_columns 826
No_of_seqs 643 out of 3821
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 22:02:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.2E-31 2.7E-36 272.4 26.2 299 9-440 111-452 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-30 3.7E-35 267.8 23.0 220 188-450 213-438 (459)
3 KOG0271 Notchless-like WD40 re 100.0 3.7E-30 8.1E-35 261.7 24.6 287 8-425 152-479 (480)
4 KOG0291 WD40-repeat-containing 100.0 4E-28 8.7E-33 265.3 41.0 430 13-500 96-613 (893)
5 PF08596 Lgl_C: Lethal giant l 100.0 1.2E-29 2.6E-34 278.1 27.5 324 285-628 3-366 (395)
6 KOG0318 WD40 repeat stress pro 100.0 7.9E-27 1.7E-31 246.4 41.3 356 12-430 57-563 (603)
7 KOG0272 U4/U6 small nuclear ri 100.0 3.7E-29 8E-34 258.0 21.8 274 190-546 173-458 (459)
8 KOG0286 G-protein beta subunit 100.0 1.7E-27 3.8E-32 235.1 27.7 289 7-425 49-343 (343)
9 KOG0291 WD40-repeat-containing 100.0 8.9E-25 1.9E-29 239.3 43.7 449 13-595 55-555 (893)
10 KOG0273 Beta-transducin family 100.0 5.4E-26 1.2E-30 237.4 29.5 275 13-427 235-523 (524)
11 KOG0263 Transcription initiati 100.0 3.4E-27 7.4E-32 261.2 21.2 202 187-428 446-650 (707)
12 KOG0319 WD40-repeat-containing 100.0 7.1E-26 1.5E-30 247.9 31.1 424 8-545 187-616 (775)
13 KOG0279 G protein beta subunit 99.9 1.2E-25 2.6E-30 221.1 27.6 236 147-436 30-271 (315)
14 KOG0279 G protein beta subunit 99.9 1.1E-25 2.5E-30 221.2 27.3 288 184-547 7-312 (315)
15 KOG0319 WD40-repeat-containing 99.9 1.1E-25 2.5E-30 246.3 28.3 341 15-441 235-591 (775)
16 KOG0306 WD40-repeat-containing 99.9 3.8E-24 8.3E-29 234.2 38.1 289 184-549 365-665 (888)
17 KOG0315 G-protein beta subunit 99.9 4.4E-25 9.5E-30 213.5 26.9 243 151-441 57-302 (311)
18 KOG0273 Beta-transducin family 99.9 6.2E-25 1.3E-29 229.5 29.6 298 12-435 177-490 (524)
19 KOG0263 Transcription initiati 99.9 4.9E-26 1.1E-30 252.1 22.5 252 178-500 364-650 (707)
20 KOG0318 WD40 repeat stress pro 99.9 1.1E-23 2.3E-28 222.8 35.4 334 8-427 185-602 (603)
21 KOG0284 Polyadenylation factor 99.9 7.2E-26 1.6E-30 232.6 17.9 243 127-433 98-343 (464)
22 KOG0286 G-protein beta subunit 99.9 5.5E-24 1.2E-28 210.5 29.5 241 145-441 67-317 (343)
23 KOG0292 Vesicle coat complex C 99.9 1.8E-23 3.9E-28 232.0 36.5 293 11-428 7-322 (1202)
24 KOG0284 Polyadenylation factor 99.9 2.4E-25 5.3E-30 228.8 17.9 280 13-427 96-380 (464)
25 KOG0266 WD40 repeat-containing 99.9 1.1E-23 2.3E-28 239.5 31.1 213 190-441 157-378 (456)
26 KOG0645 WD40 repeat protein [G 99.9 1.6E-23 3.5E-28 205.3 27.4 288 12-427 13-311 (312)
27 KOG0275 Conserved WD40 repeat- 99.9 4.7E-25 1E-29 219.7 16.4 289 230-588 210-507 (508)
28 cd00200 WD40 WD40 domain, foun 99.9 5E-23 1.1E-27 217.0 33.1 282 7-425 3-289 (289)
29 KOG0315 G-protein beta subunit 99.9 4E-23 8.6E-28 200.0 28.3 208 184-429 32-247 (311)
30 KOG0276 Vesicle coat complex C 99.9 2.6E-22 5.5E-27 215.8 35.0 278 10-422 10-294 (794)
31 PLN00181 protein SPA1-RELATED; 99.9 1.5E-22 3.2E-27 246.9 37.8 231 147-426 547-792 (793)
32 KOG0283 WD40 repeat-containing 99.9 1.1E-23 2.3E-28 235.7 23.4 244 188-500 262-577 (712)
33 KOG0316 Conserved WD40 repeat- 99.9 8.1E-23 1.8E-27 196.3 24.6 243 184-499 9-257 (307)
34 KOG0276 Vesicle coat complex C 99.9 5.5E-23 1.2E-27 220.9 23.9 243 188-499 9-257 (794)
35 KOG0295 WD40 repeat-containing 99.9 2E-22 4.3E-27 204.9 25.2 289 4-426 99-405 (406)
36 KOG1983 Tomosyn and related SN 99.9 1.4E-22 3.1E-27 244.4 28.9 255 481-824 723-990 (993)
37 KOG0295 WD40 repeat-containing 99.9 1E-22 2.2E-27 207.0 22.6 261 184-513 100-373 (406)
38 KOG0313 Microtubule binding pr 99.9 3.7E-22 8.1E-27 203.9 25.7 272 26-427 115-418 (423)
39 KOG0296 Angio-associated migra 99.9 5.1E-22 1.1E-26 202.1 26.4 283 147-499 78-398 (399)
40 KOG0296 Angio-associated migra 99.9 1.9E-21 4.2E-26 197.9 30.5 333 6-427 57-398 (399)
41 KOG0265 U5 snRNP-specific prot 99.9 7.1E-22 1.5E-26 196.4 25.5 201 184-427 39-246 (338)
42 KOG0266 WD40 repeat-containing 99.9 2.4E-21 5.3E-26 220.3 32.3 256 230-556 156-417 (456)
43 KOG0292 Vesicle coat complex C 99.9 4.2E-21 9.1E-26 213.3 32.9 258 143-435 19-288 (1202)
44 KOG0640 mRNA cleavage stimulat 99.9 5.7E-22 1.2E-26 197.1 23.4 228 176-438 96-346 (430)
45 KOG0285 Pleiotropic regulator 99.9 4.9E-22 1.1E-26 201.1 22.2 226 145-427 205-439 (460)
46 cd00200 WD40 WD40 domain, foun 99.9 1E-20 2.2E-25 199.3 33.1 280 188-545 5-288 (289)
47 KOG0645 WD40 repeat protein [G 99.9 1.2E-20 2.5E-25 185.4 30.1 207 186-427 8-225 (312)
48 PLN00181 protein SPA1-RELATED; 99.9 1.1E-20 2.4E-25 230.4 35.7 286 189-547 480-792 (793)
49 KOG1539 WD repeat protein [Gen 99.9 4E-19 8.7E-24 197.5 41.0 499 12-622 113-670 (910)
50 KOG0313 Microtubule binding pr 99.9 9.3E-21 2E-25 193.7 25.4 278 145-499 115-418 (423)
51 KOG0265 U5 snRNP-specific prot 99.9 1.3E-20 2.9E-25 187.4 25.6 287 11-424 45-335 (338)
52 KOG0293 WD40 repeat-containing 99.9 2.5E-21 5.5E-26 199.2 20.5 242 182-441 214-484 (519)
53 KOG0772 Uncharacterized conser 99.9 3.6E-21 7.8E-26 203.0 21.7 307 8-427 162-487 (641)
54 KOG0643 Translation initiation 99.9 2E-20 4.3E-25 183.2 25.2 225 185-443 3-236 (327)
55 KOG1408 WD40 repeat protein [F 99.9 6.3E-20 1.4E-24 199.6 31.5 529 12-599 77-721 (1080)
56 KOG0282 mRNA splicing factor [ 99.9 1.2E-21 2.6E-26 205.9 17.0 289 6-425 207-503 (503)
57 KOG0283 WD40 repeat-containing 99.9 5.5E-21 1.2E-25 214.1 23.1 255 231-550 265-578 (712)
58 PTZ00421 coronin; Provisional 99.9 6.3E-19 1.4E-23 200.0 39.9 292 239-601 28-332 (493)
59 KOG0285 Pleiotropic regulator 99.9 1.3E-20 2.9E-25 190.8 23.0 231 145-434 163-396 (460)
60 KOG0306 WD40-repeat-containing 99.9 5.9E-20 1.3E-24 201.7 29.4 330 13-428 320-665 (888)
61 KOG0282 mRNA splicing factor [ 99.9 2.5E-21 5.4E-26 203.6 16.8 281 230-588 211-503 (503)
62 KOG0274 Cdc4 and related F-box 99.9 6.2E-20 1.3E-24 208.5 27.2 278 188-555 204-489 (537)
63 PTZ00421 coronin; Provisional 99.9 1.6E-19 3.4E-24 204.9 29.5 212 187-437 70-300 (493)
64 PTZ00420 coronin; Provisional 99.9 4.8E-19 1E-23 201.9 32.6 194 212-435 53-257 (568)
65 KOG0310 Conserved WD40 repeat- 99.9 1.4E-19 3.1E-24 190.8 26.0 197 188-425 106-307 (487)
66 KOG0293 WD40 repeat-containing 99.9 5.7E-20 1.2E-24 189.3 22.0 290 7-427 218-513 (519)
67 KOG0281 Beta-TrCP (transducin 99.9 7.5E-21 1.6E-25 191.6 14.8 233 193-502 198-431 (499)
68 KOG0281 Beta-TrCP (transducin 99.8 7.3E-21 1.6E-25 191.7 14.0 222 146-430 208-431 (499)
69 KOG0274 Cdc4 and related F-box 99.8 1.1E-19 2.5E-24 206.3 25.5 264 145-500 218-483 (537)
70 KOG2096 WD40 repeat protein [G 99.8 4.3E-19 9.3E-24 177.5 26.4 206 192-427 187-402 (420)
71 KOG2106 Uncharacterized conser 99.8 7.5E-18 1.6E-22 177.8 36.5 470 6-595 97-620 (626)
72 KOG0275 Conserved WD40 repeat- 99.8 3.5E-20 7.5E-25 185.1 16.6 211 190-438 211-433 (508)
73 KOG0772 Uncharacterized conser 99.8 1.9E-19 4.1E-24 190.1 22.9 304 184-550 159-489 (641)
74 KOG0641 WD40 repeat protein [G 99.8 4.5E-18 9.8E-23 162.5 29.0 308 13-427 32-349 (350)
75 KOG0289 mRNA splicing factor [ 99.8 7.9E-19 1.7E-23 182.3 24.7 228 148-429 234-464 (506)
76 KOG0288 WD40 repeat protein Ti 99.8 7.7E-20 1.7E-24 188.9 16.9 288 8-424 170-458 (459)
77 KOG0973 Histone transcription 99.8 5.1E-19 1.1E-23 203.0 25.3 320 10-428 10-356 (942)
78 PTZ00420 coronin; Provisional 99.8 3.2E-18 6.9E-23 195.2 31.1 206 185-430 67-296 (568)
79 KOG0310 Conserved WD40 repeat- 99.8 9.3E-19 2E-23 184.7 24.4 244 148-452 41-289 (487)
80 KOG0305 Anaphase promoting com 99.8 5E-19 1.1E-23 194.0 22.9 159 230-429 298-463 (484)
81 KOG0289 mRNA splicing factor [ 99.8 2.5E-18 5.4E-23 178.6 25.4 209 193-440 220-432 (506)
82 KOG0277 Peroxisomal targeting 99.8 6E-19 1.3E-23 171.8 19.2 227 145-426 73-308 (311)
83 KOG0640 mRNA cleavage stimulat 99.8 1.1E-18 2.4E-23 173.9 20.5 233 146-427 185-426 (430)
84 KOG0278 Serine/threonine kinas 99.8 3.8E-19 8.2E-24 172.5 16.2 281 183-551 5-300 (334)
85 KOG0308 Conserved WD40 repeat- 99.8 1.1E-18 2.5E-23 189.1 20.8 246 143-429 35-287 (735)
86 KOG0278 Serine/threonine kinas 99.8 4.8E-19 1.1E-23 171.8 15.9 229 185-432 52-302 (334)
87 KOG0301 Phospholipase A2-activ 99.8 4.6E-18 1E-22 185.9 25.0 192 186-428 95-289 (745)
88 KOG1408 WD40 repeat protein [F 99.8 3.2E-17 7E-22 178.7 31.0 413 13-500 260-714 (1080)
89 KOG0646 WD40 repeat protein [G 99.8 2.3E-18 4.9E-23 180.9 20.9 223 143-402 91-330 (476)
90 KOG0299 U3 snoRNP-associated p 99.8 1.3E-17 2.8E-22 174.9 26.4 242 145-429 154-412 (479)
91 KOG0316 Conserved WD40 repeat- 99.8 7.5E-18 1.6E-22 162.3 22.0 234 145-437 29-267 (307)
92 KOG0294 WD40 repeat-containing 99.8 2.2E-17 4.7E-22 165.7 25.9 239 185-499 36-281 (362)
93 KOG0301 Phospholipase A2-activ 99.8 6.2E-18 1.3E-22 184.9 23.9 274 185-548 7-288 (745)
94 KOG1446 Histone H3 (Lys4) meth 99.8 1.3E-16 2.7E-21 161.0 31.0 209 184-427 92-303 (311)
95 KOG0973 Histone transcription 99.8 6.9E-18 1.5E-22 193.8 24.2 319 235-602 15-366 (942)
96 KOG1407 WD40 repeat protein [F 99.8 4.1E-17 8.9E-22 159.7 25.8 273 11-418 18-293 (313)
97 KOG0647 mRNA export protein (c 99.8 6.3E-18 1.4E-22 168.6 20.2 239 283-592 27-283 (347)
98 KOG1407 WD40 repeat protein [F 99.8 3E-17 6.4E-22 160.7 23.8 227 188-435 16-269 (313)
99 KOG1063 RNA polymerase II elon 99.8 6.8E-16 1.5E-20 169.0 36.7 311 188-548 263-699 (764)
100 KOG1446 Histone H3 (Lys4) meth 99.8 3.1E-16 6.6E-21 158.2 31.0 239 146-436 27-271 (311)
101 KOG1539 WD repeat protein [Gen 99.8 5.1E-16 1.1E-20 173.1 35.6 248 145-435 257-614 (910)
102 KOG0277 Peroxisomal targeting 99.8 7.2E-18 1.6E-22 164.3 18.1 200 192-430 60-268 (311)
103 KOG2048 WD40 repeat protein [G 99.8 3.8E-15 8.1E-20 163.1 41.1 286 13-377 25-320 (691)
104 KOG0305 Anaphase promoting com 99.8 1.9E-17 4.1E-22 181.6 23.3 195 198-434 183-383 (484)
105 KOG4283 Transcription-coupled 99.8 4.2E-17 9.2E-22 161.7 22.7 174 229-435 39-228 (397)
106 KOG0288 WD40 repeat protein Ti 99.8 9.5E-18 2.1E-22 173.5 17.2 284 184-545 167-458 (459)
107 KOG0264 Nucleosome remodeling 99.8 2.4E-17 5.1E-22 173.2 20.1 211 188-428 120-348 (422)
108 KOG0639 Transducin-like enhanc 99.8 4.1E-17 8.9E-22 171.8 21.4 243 149-450 434-682 (705)
109 KOG0641 WD40 repeat protein [G 99.8 7.4E-16 1.6E-20 147.4 27.5 211 188-434 85-309 (350)
110 KOG0268 Sof1-like rRNA process 99.8 6.5E-18 1.4E-22 172.0 14.1 258 181-499 55-345 (433)
111 KOG1036 Mitotic spindle checkp 99.8 3.4E-16 7.5E-21 157.0 26.2 225 146-417 66-294 (323)
112 KOG0639 Transducin-like enhanc 99.8 3.4E-17 7.5E-22 172.4 19.8 220 146-426 478-703 (705)
113 KOG1332 Vesicle coat complex C 99.8 1.8E-17 3.9E-22 160.7 16.2 209 189-427 8-241 (299)
114 KOG2096 WD40 repeat protein [G 99.8 5.9E-17 1.3E-21 162.3 20.3 249 187-497 81-400 (420)
115 KOG0267 Microtubule severing p 99.8 1.1E-18 2.4E-23 191.2 8.5 205 189-434 25-233 (825)
116 KOG0647 mRNA export protein (c 99.7 5.1E-17 1.1E-21 162.1 18.5 228 191-435 26-289 (347)
117 KOG0300 WD40 repeat-containing 99.7 2.7E-17 5.8E-22 164.3 16.4 217 188-434 144-394 (481)
118 KOG0308 Conserved WD40 repeat- 99.7 1.8E-17 3.9E-22 180.0 16.3 211 202-441 35-257 (735)
119 KOG0264 Nucleosome remodeling 99.7 1.5E-16 3.2E-21 167.2 22.4 235 150-427 142-404 (422)
120 KOG1274 WD40 repeat protein [G 99.7 3.7E-16 7.9E-21 176.2 26.9 205 206-440 68-281 (933)
121 KOG2106 Uncharacterized conser 99.7 1.7E-14 3.6E-19 152.8 37.5 323 12-428 153-522 (626)
122 KOG2048 WD40 repeat protein [G 99.7 2.1E-15 4.6E-20 165.0 31.2 227 188-454 21-257 (691)
123 KOG0294 WD40 repeat-containing 99.7 1.3E-15 2.8E-20 153.0 27.0 224 146-429 54-283 (362)
124 KOG1036 Mitotic spindle checkp 99.7 6.4E-16 1.4E-20 155.1 24.8 250 120-435 8-270 (323)
125 KOG2055 WD40 repeat protein [G 99.7 2.7E-16 5.9E-21 164.8 22.9 204 193-427 304-512 (514)
126 KOG0299 U3 snoRNP-associated p 99.7 3.7E-16 8E-21 164.1 23.0 209 186-436 136-365 (479)
127 KOG0269 WD40 repeat-containing 99.7 1.6E-16 3.6E-21 175.7 19.7 202 193-430 40-253 (839)
128 KOG0646 WD40 repeat protein [G 99.7 2.4E-16 5.3E-21 165.7 19.4 215 192-435 81-315 (476)
129 KOG1332 Vesicle coat complex C 99.7 3.8E-16 8.3E-21 151.6 19.2 234 147-427 25-286 (299)
130 KOG0269 WD40 repeat-containing 99.7 9.9E-17 2.1E-21 177.4 16.9 234 144-427 99-340 (839)
131 KOG0268 Sof1-like rRNA process 99.7 9.8E-17 2.1E-21 163.5 15.4 287 5-379 58-348 (433)
132 KOG0302 Ribosome Assembly prot 99.7 1.8E-16 3.8E-21 162.4 16.6 208 188-427 147-378 (440)
133 KOG1063 RNA polymerase II elon 99.7 1.1E-14 2.3E-19 159.7 29.8 371 7-434 185-657 (764)
134 KOG0650 WD40 repeat nucleolar 99.7 1.4E-15 3E-20 163.8 21.7 319 10-424 397-732 (733)
135 KOG0302 Ribosome Assembly prot 99.7 2.3E-15 5E-20 154.3 22.4 237 146-419 166-431 (440)
136 KOG0270 WD40 repeat-containing 99.7 2.1E-15 4.6E-20 157.8 21.3 187 203-428 191-405 (463)
137 KOG2445 Nuclear pore complex c 99.7 7.6E-15 1.6E-19 147.1 23.6 224 189-427 10-318 (361)
138 KOG0300 WD40 repeat-containing 99.7 1.7E-15 3.8E-20 151.4 19.0 206 186-434 184-434 (481)
139 KOG0643 Translation initiation 99.7 3.6E-14 7.9E-19 139.6 25.0 198 230-500 7-221 (327)
140 KOG4283 Transcription-coupled 99.7 2E-14 4.4E-19 142.9 22.8 206 188-431 39-280 (397)
141 KOG4328 WD40 protein [Function 99.6 1.4E-14 3.1E-19 152.1 21.9 305 11-427 184-495 (498)
142 KOG4378 Nuclear protein COP1 [ 99.6 2E-14 4.3E-19 151.7 22.6 206 146-402 92-304 (673)
143 KOG2055 WD40 repeat protein [G 99.6 2.3E-14 4.9E-19 150.6 22.9 288 192-547 213-511 (514)
144 KOG0321 WD40 repeat-containing 99.6 1.8E-14 3.8E-19 156.7 21.9 256 145-430 64-350 (720)
145 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 4.5E-13 9.8E-18 143.9 33.1 207 195-437 75-289 (300)
146 KOG1274 WD40 repeat protein [G 99.6 9.4E-14 2E-18 157.0 27.8 244 190-500 11-263 (933)
147 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 8.9E-13 1.9E-17 141.6 34.0 273 148-514 4-289 (300)
148 KOG1538 Uncharacterized conser 99.6 5.2E-14 1.1E-18 152.9 20.1 276 194-548 14-293 (1081)
149 KOG0642 Cell-cycle nuclear pro 99.6 1.5E-14 3.2E-19 155.7 15.0 242 186-438 288-572 (577)
150 KOG0267 Microtubule severing p 99.6 2.5E-15 5.5E-20 165.1 8.5 190 188-418 66-259 (825)
151 KOG1273 WD40 repeat protein [G 99.6 3.2E-13 6.9E-18 135.7 21.5 195 239-500 31-227 (405)
152 KOG4328 WD40 protein [Function 99.6 3.9E-13 8.5E-18 141.4 21.9 205 188-427 182-399 (498)
153 KOG0270 WD40 repeat-containing 99.5 1.9E-13 4.2E-18 143.3 18.3 200 242-500 191-405 (463)
154 KOG2919 Guanine nucleotide-bin 99.5 9E-13 1.9E-17 133.0 21.9 183 195-416 161-359 (406)
155 KOG2445 Nuclear pore complex c 99.5 2E-12 4.3E-17 129.9 24.1 177 186-375 106-317 (361)
156 KOG0307 Vesicle coat complex C 99.5 7.8E-14 1.7E-18 161.4 16.1 231 151-430 86-330 (1049)
157 KOG0307 Vesicle coat complex C 99.5 6.7E-14 1.5E-18 162.0 14.3 209 194-436 66-293 (1049)
158 KOG1034 Transcriptional repres 99.5 9.2E-13 2E-17 133.3 19.9 316 71-427 37-383 (385)
159 KOG4378 Nuclear protein COP1 [ 99.5 1.2E-12 2.6E-17 138.5 21.0 233 148-434 5-246 (673)
160 KOG0321 WD40 repeat-containing 99.5 1.1E-12 2.4E-17 143.0 20.9 270 111-430 86-394 (720)
161 KOG1034 Transcriptional repres 99.5 1E-12 2.2E-17 133.0 19.3 222 191-431 88-341 (385)
162 KOG0303 Actin-binding protein 99.5 1E-12 2.2E-17 135.7 19.4 209 228-499 76-294 (472)
163 KOG1240 Protein kinase contain 99.5 3.8E-12 8.3E-17 147.6 25.7 288 2-380 1037-1338(1431)
164 KOG1538 Uncharacterized conser 99.5 2.2E-12 4.8E-17 140.4 22.3 275 13-427 12-293 (1081)
165 KOG1273 WD40 repeat protein [G 99.5 7.3E-12 1.6E-16 126.1 23.4 197 194-427 25-226 (405)
166 KOG1517 Guanine nucleotide bin 99.5 3.3E-12 7.2E-17 145.8 23.1 283 104-430 1088-1384(1387)
167 KOG0771 Prolactin regulatory e 99.5 5.4E-12 1.2E-16 132.2 20.9 199 196-427 148-354 (398)
168 KOG1009 Chromatin assembly com 99.5 9.5E-12 2.1E-16 129.4 22.4 183 234-432 14-200 (434)
169 KOG1963 WD40 repeat protein [G 99.4 2.9E-10 6.3E-15 129.1 34.6 313 231-595 203-534 (792)
170 KOG0322 G-protein beta subunit 99.4 5.5E-12 1.2E-16 124.2 17.9 154 244-426 166-322 (323)
171 KOG1587 Cytoplasmic dynein int 99.4 1.4E-11 3.1E-16 139.5 23.2 263 13-377 242-517 (555)
172 KOG0290 Conserved WD40 repeat- 99.4 4.7E-11 1E-15 119.2 23.4 164 232-428 149-319 (364)
173 COG2319 FOG: WD40 repeat [Gene 99.4 7.7E-09 1.7E-13 114.7 44.2 209 185-430 148-362 (466)
174 KOG1009 Chromatin assembly com 99.4 2.4E-11 5.1E-16 126.5 21.0 225 187-430 60-375 (434)
175 KOG0649 WD40 repeat protein [G 99.4 9.8E-11 2.1E-15 114.1 23.4 240 146-432 23-278 (325)
176 KOG2919 Guanine nucleotide-bin 99.4 6.3E-11 1.4E-15 119.9 22.5 252 143-432 59-333 (406)
177 KOG1517 Guanine nucleotide bin 99.4 3.6E-11 7.9E-16 137.6 23.1 210 194-429 1066-1289(1387)
178 KOG1188 WD40 repeat protein [G 99.4 6.7E-12 1.4E-16 127.9 15.3 147 144-315 39-198 (376)
179 KOG1963 WD40 repeat protein [G 99.4 3.5E-10 7.6E-15 128.4 29.5 352 12-433 204-589 (792)
180 KOG1524 WD40 repeat-containing 99.4 7.4E-11 1.6E-15 126.2 22.5 198 144-372 74-282 (737)
181 KOG1188 WD40 repeat protein [G 99.4 5.5E-11 1.2E-15 121.4 19.6 149 244-428 41-197 (376)
182 KOG0642 Cell-cycle nuclear pro 99.4 8.1E-12 1.8E-16 134.9 14.2 263 280-591 291-562 (577)
183 KOG2394 WD40 protein DMR-N9 [G 99.3 4E-11 8.7E-16 128.6 19.1 222 143-428 183-453 (636)
184 KOG0650 WD40 repeat nucleolar 99.3 7.9E-11 1.7E-15 127.7 20.8 266 278-589 395-679 (733)
185 KOG1007 WD repeat protein TSSC 99.3 2.1E-10 4.6E-15 114.4 22.2 208 184-426 114-360 (370)
186 KOG0303 Actin-binding protein 99.3 5.2E-11 1.1E-15 123.4 18.3 139 278-440 76-216 (472)
187 KOG1240 Protein kinase contain 99.3 1.2E-10 2.7E-15 135.4 23.2 199 230-435 1045-1281(1431)
188 KOG1445 Tumor-specific antigen 99.3 5E-11 1.1E-15 129.4 17.5 157 239-427 635-798 (1012)
189 KOG0649 WD40 repeat protein [G 99.3 3.6E-10 7.8E-15 110.2 21.4 175 239-435 18-194 (325)
190 KOG1587 Cytoplasmic dynein int 99.3 2.6E-10 5.6E-15 129.4 23.2 219 189-428 239-473 (555)
191 COG2319 FOG: WD40 repeat [Gene 99.3 1.8E-08 4E-13 111.7 38.1 233 147-435 79-322 (466)
192 KOG0644 Uncharacterized conser 99.3 1.7E-11 3.6E-16 137.1 12.9 218 186-435 184-434 (1113)
193 KOG2111 Uncharacterized conser 99.3 9.3E-09 2E-13 104.5 30.1 301 12-370 4-316 (346)
194 KOG4227 WD40 repeat protein [G 99.3 3.1E-10 6.7E-15 117.1 19.7 212 188-431 52-278 (609)
195 KOG2110 Uncharacterized conser 99.3 7.2E-09 1.6E-13 107.2 28.6 301 13-376 5-330 (391)
196 KOG1524 WD40 repeat-containing 99.3 3.8E-10 8.3E-15 120.8 20.0 157 207-401 79-237 (737)
197 KOG1007 WD repeat protein TSSC 99.2 4.7E-10 1E-14 112.0 18.4 205 189-427 60-289 (370)
198 PRK11028 6-phosphogluconolacto 99.2 1.2E-08 2.6E-13 111.9 31.2 206 193-428 35-259 (330)
199 KOG4227 WD40 repeat protein [G 99.2 2.8E-10 6.1E-15 117.4 16.8 166 230-429 53-227 (609)
200 PRK11028 6-phosphogluconolacto 99.2 3.4E-08 7.4E-13 108.3 34.7 214 194-431 81-310 (330)
201 KOG1523 Actin-related protein 99.2 1.3E-09 2.8E-14 110.6 20.2 208 191-430 9-239 (361)
202 PRK01742 tolB translocation pr 99.2 3.7E-09 8.1E-14 120.0 24.7 203 187-436 198-412 (429)
203 KOG2321 WD40 repeat protein [G 99.2 3.6E-09 7.9E-14 114.6 22.6 284 191-555 50-350 (703)
204 KOG1272 WD40-repeat-containing 99.2 1.8E-10 4E-15 121.7 12.1 265 84-424 137-406 (545)
205 KOG3881 Uncharacterized conser 99.2 1.1E-09 2.4E-14 113.9 17.6 202 203-434 115-327 (412)
206 KOG1445 Tumor-specific antigen 99.2 6.1E-10 1.3E-14 121.1 15.7 163 239-430 587-753 (1012)
207 KOG2394 WD40 protein DMR-N9 [G 99.1 1.7E-09 3.7E-14 116.3 17.2 73 233-315 290-364 (636)
208 KOG1523 Actin-related protein 99.1 1.1E-08 2.4E-13 104.0 19.4 231 142-401 19-259 (361)
209 KOG0322 G-protein beta subunit 99.1 9.5E-10 2.1E-14 108.7 11.2 149 146-312 166-322 (323)
210 KOG1310 WD40 repeat protein [G 99.1 1.2E-09 2.5E-14 117.5 12.5 228 188-435 46-311 (758)
211 KOG1310 WD40 repeat protein [G 99.1 1.7E-09 3.6E-14 116.3 13.7 172 230-427 47-231 (758)
212 KOG1272 WD40-repeat-containing 99.0 5E-10 1.1E-14 118.4 9.2 196 196-435 133-331 (545)
213 KOG2110 Uncharacterized conser 99.0 5.3E-08 1.2E-12 100.9 23.7 151 242-428 96-249 (391)
214 PF08662 eIF2A: Eukaryotic tra 99.0 2.3E-08 4.9E-13 100.4 20.1 116 284-435 60-186 (194)
215 KOG2321 WD40 repeat protein [G 99.0 7.8E-08 1.7E-12 104.5 24.3 165 241-434 144-309 (703)
216 KOG0644 Uncharacterized conser 99.0 1E-09 2.2E-14 123.2 10.1 157 230-427 187-346 (1113)
217 PF08662 eIF2A: Eukaryotic tra 99.0 2E-08 4.3E-13 100.8 18.3 151 197-384 10-186 (194)
218 KOG0771 Prolactin regulatory e 99.0 7.5E-09 1.6E-13 108.9 15.1 162 235-434 148-318 (398)
219 KOG2111 Uncharacterized conser 99.0 1.4E-07 3E-12 96.1 23.3 210 195-428 8-257 (346)
220 PRK03629 tolB translocation pr 99.0 3.8E-07 8.2E-12 103.5 28.7 204 188-435 194-413 (429)
221 PRK05137 tolB translocation pr 99.0 2.8E-07 6E-12 105.1 27.7 199 187-430 196-415 (435)
222 KOG2139 WD40 repeat protein [G 98.9 6.4E-07 1.4E-11 92.6 26.0 224 188-427 192-431 (445)
223 KOG0974 WD-repeat protein WDR6 98.9 1.7E-06 3.7E-11 100.6 31.6 140 146-315 146-290 (967)
224 PRK01742 tolB translocation pr 98.9 1.7E-07 3.7E-12 106.5 23.7 176 213-432 184-366 (429)
225 KOG1334 WD40 repeat protein [G 98.9 3.6E-08 7.7E-13 105.3 16.5 234 187-434 137-431 (559)
226 KOG1354 Serine/threonine prote 98.9 4.7E-07 1E-11 93.0 23.0 177 189-381 161-364 (433)
227 PRK04922 tolB translocation pr 98.9 5.6E-07 1.2E-11 102.5 26.6 200 188-433 199-416 (433)
228 KOG4497 Uncharacterized conser 98.9 8.5E-07 1.8E-11 90.5 23.9 278 149-499 65-431 (447)
229 KOG4497 Uncharacterized conser 98.8 4.9E-08 1.1E-12 99.3 13.5 209 198-435 14-248 (447)
230 KOG2139 WD40 repeat protein [G 98.8 7.8E-07 1.7E-11 92.0 21.9 199 190-422 96-306 (445)
231 PRK02889 tolB translocation pr 98.8 1.6E-06 3.4E-11 98.5 26.6 202 188-433 191-408 (427)
232 PF04762 IKI3: IKI3 family; I 98.8 5.3E-05 1.1E-09 92.9 41.0 241 126-427 76-379 (928)
233 PF02239 Cytochrom_D1: Cytochr 98.8 1.2E-05 2.6E-10 88.8 31.7 329 147-556 8-355 (369)
234 KOG1334 WD40 repeat protein [G 98.8 9.4E-08 2E-12 102.1 14.0 308 71-430 141-469 (559)
235 KOG3881 Uncharacterized conser 98.7 2.7E-07 6E-12 96.3 16.0 198 144-384 114-328 (412)
236 KOG1409 Uncharacterized conser 98.7 4.2E-07 9.2E-12 93.4 16.3 226 187-428 19-271 (404)
237 PF04762 IKI3: IKI3 family; I 98.7 0.0005 1.1E-08 84.5 45.7 173 197-377 261-457 (928)
238 KOG0974 WD-repeat protein WDR6 98.7 2.7E-07 5.8E-12 107.2 16.3 188 198-427 93-288 (967)
239 KOG0290 Conserved WD40 repeat- 98.7 3.2E-07 6.9E-12 92.2 14.2 290 73-416 45-355 (364)
240 PRK04922 tolB translocation pr 98.7 3.7E-06 8.1E-11 95.7 25.2 175 214-432 185-373 (433)
241 KOG1064 RAVE (regulator of V-A 98.7 7.2E-08 1.6E-12 116.4 10.2 215 141-420 2216-2439(2439)
242 KOG2315 Predicted translation 98.7 2.2E-05 4.7E-10 86.0 28.1 223 146-434 137-396 (566)
243 PRK03629 tolB translocation pr 98.7 6.4E-06 1.4E-10 93.5 25.7 157 232-431 197-367 (429)
244 PRK02889 tolB translocation pr 98.6 8.8E-06 1.9E-10 92.4 26.7 161 231-432 193-365 (427)
245 PRK05137 tolB translocation pr 98.6 5.7E-06 1.2E-10 94.3 25.0 172 215-430 184-369 (435)
246 TIGR02800 propeller_TolB tol-p 98.6 1.2E-05 2.5E-10 91.3 26.5 201 188-434 185-403 (417)
247 PF10282 Lactonase: Lactonase, 98.6 0.00034 7.3E-09 77.2 36.6 215 191-434 85-331 (345)
248 KOG0882 Cyclophilin-related pe 98.6 1E-06 2.2E-11 93.5 15.4 338 190-550 7-424 (558)
249 KOG1354 Serine/threonine prote 98.6 9.4E-07 2E-11 90.8 14.5 231 193-444 26-319 (433)
250 KOG1064 RAVE (regulator of V-A 98.6 2.5E-07 5.4E-12 111.9 11.6 196 191-438 2207-2409(2439)
251 KOG4547 WD40 repeat-containing 98.6 6.2E-06 1.3E-10 90.8 21.3 153 240-427 67-220 (541)
252 KOG4547 WD40 repeat-containing 98.5 2E-05 4.3E-10 86.9 24.3 164 241-441 3-186 (541)
253 KOG1912 WD40 repeat protein [G 98.5 0.00043 9.4E-09 78.5 34.1 85 297-381 439-556 (1062)
254 KOG3914 WD repeat protein WDR4 98.5 1.7E-06 3.7E-11 91.1 14.2 160 239-435 70-231 (390)
255 PF02239 Cytochrom_D1: Cytochr 98.5 0.00015 3.2E-09 80.3 30.4 258 144-436 47-356 (369)
256 PRK01029 tolB translocation pr 98.5 5.2E-05 1.1E-09 85.9 26.9 203 191-432 183-408 (428)
257 TIGR02800 propeller_TolB tol-p 98.5 3.6E-05 7.8E-10 87.3 25.5 157 232-431 188-358 (417)
258 COG2706 3-carboxymuconate cycl 98.5 0.00087 1.9E-08 70.4 32.8 209 196-434 92-330 (346)
259 PF10282 Lactonase: Lactonase, 98.5 0.00075 1.6E-08 74.4 34.5 170 192-382 143-330 (345)
260 KOG4190 Uncharacterized conser 98.5 9.3E-07 2E-11 95.3 10.9 207 187-434 730-955 (1034)
261 PRK00178 tolB translocation pr 98.4 9.1E-05 2E-09 84.4 27.4 195 188-427 194-406 (430)
262 KOG1409 Uncharacterized conser 98.4 4.6E-06 1E-10 86.0 14.5 165 192-378 68-272 (404)
263 KOG4532 WD40-like repeat conta 98.4 4.6E-05 9.9E-10 76.3 20.9 200 202-435 82-290 (344)
264 PRK04792 tolB translocation pr 98.4 0.00011 2.4E-09 83.9 27.5 202 188-435 213-432 (448)
265 KOG4714 Nucleoporin [Nuclear s 98.4 5.8E-06 1.3E-10 82.2 13.2 170 224-433 81-259 (319)
266 KOG0280 Uncharacterized conser 98.3 2.8E-05 6E-10 78.8 16.4 154 239-428 129-285 (339)
267 KOG2041 WD40 repeat protein [G 98.3 0.0027 5.7E-08 71.6 32.9 149 192-367 115-279 (1189)
268 PRK00178 tolB translocation pr 98.3 0.00024 5.2E-09 80.9 25.6 158 231-431 196-367 (430)
269 TIGR03300 assembly_YfgL outer 98.2 0.0011 2.3E-08 74.2 29.0 299 204-586 65-375 (377)
270 KOG2315 Predicted translation 98.2 0.00029 6.2E-09 77.5 22.8 245 146-435 46-352 (566)
271 COG4946 Uncharacterized protei 98.2 0.00018 3.9E-09 77.2 20.6 221 145-417 277-508 (668)
272 PRK04792 tolB translocation pr 98.2 0.00043 9.3E-09 79.1 25.4 156 233-431 217-386 (448)
273 TIGR03300 assembly_YfgL outer 98.1 0.0025 5.4E-08 71.3 29.7 195 203-434 104-304 (377)
274 PF15492 Nbas_N: Neuroblastoma 98.1 0.0018 3.9E-08 66.2 24.9 214 198-435 3-267 (282)
275 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.013 2.8E-07 63.8 33.1 212 195-435 107-338 (352)
276 KOG1912 WD40 repeat protein [G 98.1 0.00087 1.9E-08 76.2 24.0 249 239-546 23-302 (1062)
277 KOG0309 Conserved WD40 repeat- 98.0 2.3E-05 5.1E-10 87.8 11.0 205 191-429 23-234 (1081)
278 PLN02919 haloacid dehalogenase 98.0 0.00074 1.6E-08 84.6 25.4 220 195-432 626-893 (1057)
279 KOG2695 WD40 repeat protein [G 98.0 2.2E-05 4.8E-10 81.1 9.7 134 283-437 252-386 (425)
280 PF15492 Nbas_N: Neuroblastoma 98.0 0.0011 2.4E-08 67.7 21.7 31 284-314 230-260 (282)
281 KOG4190 Uncharacterized conser 98.0 2.1E-05 4.5E-10 85.2 9.3 173 230-435 732-914 (1034)
282 KOG2695 WD40 repeat protein [G 98.0 3.9E-05 8.4E-10 79.3 10.8 117 345-499 251-376 (425)
283 COG2706 3-carboxymuconate cycl 98.0 0.03 6.5E-07 59.2 32.1 169 189-378 36-223 (346)
284 COG5354 Uncharacterized protei 98.0 0.013 2.8E-07 64.2 29.9 71 191-264 31-119 (561)
285 KOG2114 Vacuolar assembly/sort 98.0 0.0013 2.9E-08 75.8 23.7 165 235-431 27-204 (933)
286 KOG0280 Uncharacterized conser 98.0 0.00024 5.1E-09 72.3 15.4 157 245-432 87-247 (339)
287 KOG4714 Nucleoporin [Nuclear s 98.0 8.6E-05 1.9E-09 74.1 11.9 157 190-377 87-255 (319)
288 COG4946 Uncharacterized protei 97.9 0.018 4E-07 62.3 29.7 190 200-434 274-484 (668)
289 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.015 3.2E-07 63.4 28.8 119 242-384 205-338 (352)
290 COG5170 CDC55 Serine/threonine 97.9 0.00054 1.2E-08 70.0 16.2 125 189-315 169-311 (460)
291 PRK01029 tolB translocation pr 97.9 0.0013 2.8E-08 74.7 21.4 173 193-402 231-425 (428)
292 PF00400 WD40: WD domain, G-be 97.9 1.3E-05 2.8E-10 57.4 3.4 38 4-42 2-39 (39)
293 KOG3617 WD40 and TPR repeat-co 97.9 0.00024 5.2E-09 81.0 14.5 105 239-376 23-131 (1416)
294 KOG3914 WD repeat protein WDR4 97.8 0.00021 4.5E-09 75.7 13.0 84 280-384 148-231 (390)
295 PF00400 WD40: WD domain, G-be 97.8 4.3E-05 9.3E-10 54.7 5.4 33 279-311 7-39 (39)
296 PF11768 DUF3312: Protein of u 97.8 0.048 1E-06 61.3 31.3 80 340-430 253-332 (545)
297 KOG1920 IkappaB kinase complex 97.8 0.014 2.9E-07 70.3 28.3 180 234-435 69-281 (1265)
298 KOG2066 Vacuolar assembly/sort 97.8 0.0016 3.4E-08 74.8 19.4 181 242-499 48-233 (846)
299 COG5170 CDC55 Serine/threonine 97.8 0.00041 8.9E-09 70.8 13.1 222 192-440 26-323 (460)
300 KOG0882 Cyclophilin-related pe 97.8 0.00019 4.2E-09 76.7 11.1 252 232-499 8-305 (558)
301 KOG4532 WD40-like repeat conta 97.7 0.0031 6.7E-08 63.5 18.8 195 146-381 85-287 (344)
302 KOG2041 WD40 repeat protein [G 97.7 0.00079 1.7E-08 75.6 15.8 252 146-435 27-304 (1189)
303 PLN02919 haloacid dehalogenase 97.7 0.022 4.9E-07 71.5 29.7 220 196-432 571-838 (1057)
304 KOG2066 Vacuolar assembly/sort 97.6 0.0017 3.7E-08 74.5 16.8 184 193-427 40-233 (846)
305 KOG2114 Vacuolar assembly/sort 97.6 0.007 1.5E-07 70.1 21.5 212 194-435 27-251 (933)
306 PF00957 Synaptobrevin: Synapt 97.6 6.3E-05 1.4E-09 65.1 4.1 48 775-822 17-64 (89)
307 KOG1920 IkappaB kinase complex 97.6 0.012 2.5E-07 70.8 23.7 188 145-379 80-325 (1265)
308 KOG0309 Conserved WD40 repeat- 97.6 0.0009 2E-08 75.5 13.4 236 145-428 81-340 (1081)
309 PF08450 SGL: SMP-30/Gluconola 97.6 0.079 1.7E-06 55.2 27.9 215 146-416 13-244 (246)
310 KOG3621 WD40 repeat-containing 97.5 0.0015 3.3E-08 73.9 15.0 116 238-377 40-155 (726)
311 KOG0860 Synaptobrevin/VAMP-lik 97.5 6.5E-05 1.4E-09 65.9 3.4 39 781-819 49-87 (116)
312 PF11768 DUF3312: Protein of u 97.5 0.0031 6.7E-08 70.6 16.7 77 282-381 258-334 (545)
313 KOG3621 WD40 repeat-containing 97.5 0.015 3.2E-07 66.2 21.8 117 193-314 34-155 (726)
314 KOG1275 PAB-dependent poly(A) 97.5 0.0016 3.5E-08 75.4 14.1 181 144-374 146-340 (1118)
315 PRK11138 outer membrane biogen 97.4 0.15 3.2E-06 57.3 30.0 154 244-436 206-362 (394)
316 PRK11138 outer membrane biogen 97.4 0.24 5.2E-06 55.7 31.3 192 205-434 121-319 (394)
317 KOG1645 RING-finger-containing 97.4 0.0081 1.8E-07 63.9 16.6 99 281-401 191-291 (463)
318 KOG1645 RING-finger-containing 97.3 0.0085 1.8E-07 63.7 16.3 76 188-264 189-269 (463)
319 KOG3617 WD40 and TPR repeat-co 97.3 0.0044 9.6E-08 71.1 15.1 108 196-313 19-131 (1416)
320 KOG2314 Translation initiation 97.3 0.11 2.3E-06 57.8 24.4 109 284-420 446-560 (698)
321 PRK04043 tolB translocation pr 97.3 0.073 1.6E-06 60.1 24.6 187 194-427 189-400 (419)
322 PF13360 PQQ_2: PQQ-like domai 97.3 0.088 1.9E-06 54.3 23.6 149 251-438 1-151 (238)
323 KOG1832 HIV-1 Vpr-binding prot 97.3 0.0002 4.3E-09 82.0 3.8 196 188-434 1097-1298(1516)
324 PF08450 SGL: SMP-30/Gluconola 97.2 0.27 5.8E-06 51.2 26.7 203 198-437 5-222 (246)
325 KOG1275 PAB-dependent poly(A) 97.2 0.0037 7.9E-08 72.6 12.9 150 235-427 179-342 (1118)
326 KOG4640 Anaphase-promoting com 97.2 0.0015 3.3E-08 73.0 9.3 93 284-401 21-115 (665)
327 PF07433 DUF1513: Protein of u 97.2 0.099 2.1E-06 55.2 22.2 175 239-435 58-255 (305)
328 KOG2314 Translation initiation 97.2 0.098 2.1E-06 58.0 22.6 67 195-263 213-293 (698)
329 PF00780 CNH: CNH domain; Int 97.1 0.36 7.9E-06 51.1 27.4 159 241-434 5-172 (275)
330 PF08366 LLGL: LLGL2; InterPr 97.1 0.0078 1.7E-07 52.8 11.4 89 69-164 10-101 (105)
331 PF13360 PQQ_2: PQQ-like domai 97.1 0.17 3.6E-06 52.2 23.9 199 201-434 33-237 (238)
332 PRK04043 tolB translocation pr 97.0 0.051 1.1E-06 61.4 19.9 148 239-431 195-361 (419)
333 PF04841 Vps16_N: Vps16, N-ter 97.0 0.4 8.7E-06 54.1 27.1 177 214-400 62-268 (410)
334 COG5354 Uncharacterized protei 97.0 0.46 1E-05 52.5 25.6 111 283-427 274-395 (561)
335 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.078 1.7E-06 47.1 15.2 104 286-422 2-109 (111)
336 PF08596 Lgl_C: Lethal giant l 96.8 0.31 6.8E-06 54.4 23.3 220 194-435 3-298 (395)
337 KOG1832 HIV-1 Vpr-binding prot 96.7 0.0012 2.6E-08 75.9 3.9 159 231-434 1099-1262(1516)
338 KOG1008 Uncharacterized conser 96.6 0.00087 1.9E-08 74.8 2.0 202 193-427 57-275 (783)
339 PF03178 CPSF_A: CPSF A subuni 96.6 0.98 2.1E-05 49.1 25.8 220 119-373 17-262 (321)
340 PF14727 PHTB1_N: PTHB1 N-term 96.5 1.9 4.2E-05 48.2 32.2 289 242-602 36-362 (418)
341 PF08553 VID27: VID27 cytoplas 96.5 0.26 5.5E-06 59.1 21.1 203 297-539 544-762 (794)
342 PRK02888 nitrous-oxide reducta 96.4 0.64 1.4E-05 53.8 23.3 219 189-428 126-405 (635)
343 PF04053 Coatomer_WDAD: Coatom 96.4 0.28 6E-06 55.6 20.2 179 189-425 29-221 (443)
344 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.66 1.4E-05 47.1 20.0 112 291-434 18-130 (354)
345 KOG4649 PQQ (pyrrolo-quinoline 96.0 2.1 4.6E-05 43.6 25.0 143 244-429 24-167 (354)
346 PF07433 DUF1513: Protein of u 96.0 1.3 2.8E-05 47.0 21.0 174 198-384 56-255 (305)
347 PF06977 SdiA-regulated: SdiA- 96.0 2.4 5.2E-05 44.1 22.8 217 187-423 16-246 (248)
348 smart00320 WD40 WD40 repeats. 95.9 0.0095 2.1E-07 40.6 3.6 33 9-42 8-40 (40)
349 KOG2079 Vacuolar assembly/sort 95.8 0.03 6.4E-07 66.7 8.9 110 285-420 89-198 (1206)
350 KOG1897 Damage-specific DNA bi 95.8 6.4 0.00014 47.4 38.2 164 284-499 488-659 (1096)
351 PF14783 BBS2_Mid: Ciliary BBS 95.8 0.27 5.9E-06 43.7 12.8 109 394-545 2-111 (111)
352 PF14655 RAB3GAP2_N: Rab3 GTPa 95.8 3.9 8.4E-05 45.8 24.7 86 347-437 308-408 (415)
353 KOG1008 Uncharacterized conser 95.7 0.012 2.6E-07 66.1 5.1 154 239-426 66-224 (783)
354 PF00780 CNH: CNH domain; Int 95.7 3.4 7.3E-05 43.6 26.0 237 144-436 6-264 (275)
355 smart00320 WD40 WD40 repeats. 95.7 0.017 3.6E-07 39.3 4.0 31 281-311 10-40 (40)
356 PF04053 Coatomer_WDAD: Coatom 95.3 0.17 3.8E-06 57.2 12.4 140 284-499 33-173 (443)
357 PF03178 CPSF_A: CPSF A subuni 95.2 0.68 1.5E-05 50.4 16.6 134 253-427 62-202 (321)
358 KOG4640 Anaphase-promoting com 95.0 0.064 1.4E-06 60.5 7.8 68 239-317 28-96 (665)
359 PF12894 Apc4_WD40: Anaphase-p 94.9 0.062 1.4E-06 40.0 4.9 30 284-313 12-41 (47)
360 PF12894 Apc4_WD40: Anaphase-p 94.6 0.081 1.8E-06 39.4 5.0 35 346-381 11-45 (47)
361 PF04841 Vps16_N: Vps16, N-ter 94.4 11 0.00024 42.5 26.9 56 234-298 217-274 (410)
362 KOG2079 Vacuolar assembly/sort 93.9 0.22 4.7E-06 59.7 9.0 86 350-443 91-176 (1206)
363 KOG0859 Synaptobrevin/VAMP-lik 93.9 0.064 1.4E-06 51.7 3.9 45 776-820 140-184 (217)
364 PRK13616 lipoprotein LpqB; Pro 93.1 17 0.00036 43.1 23.1 159 193-374 350-523 (591)
365 KOG2395 Protein involved in va 92.8 5.4 0.00012 44.8 16.9 116 286-427 378-500 (644)
366 PRK02888 nitrous-oxide reducta 92.7 25 0.00054 41.3 24.7 158 196-377 238-405 (635)
367 cd00216 PQQ_DH Dehydrogenases 92.5 25 0.00053 40.8 28.2 65 366-436 364-433 (488)
368 PF14761 HPS3_N: Hermansky-Pud 92.2 13 0.00028 37.4 17.3 123 244-380 29-167 (215)
369 PF08553 VID27: VID27 cytoplas 92.2 3 6.6E-05 50.2 15.4 102 360-499 544-647 (794)
370 PF06433 Me-amine-dh_H: Methyl 91.9 16 0.00034 39.5 18.8 211 198-435 100-328 (342)
371 KOG2280 Vacuolar assembly/sort 91.0 36 0.00077 40.3 21.4 40 346-385 216-255 (829)
372 PF06433 Me-amine-dh_H: Methyl 90.7 28 0.00061 37.7 20.5 46 340-385 282-329 (342)
373 PF10979 DUF2786: Protein of u 90.3 0.14 3.1E-06 37.2 1.3 39 782-820 1-39 (43)
374 PRK13616 lipoprotein LpqB; Pro 90.3 11 0.00023 44.6 17.4 147 239-419 357-517 (591)
375 KOG2444 WD40 repeat protein [G 90.2 0.77 1.7E-05 46.0 6.6 105 293-433 68-172 (238)
376 COG3391 Uncharacterized conser 89.6 21 0.00046 39.8 18.6 156 239-434 81-246 (381)
377 PF12234 Rav1p_C: RAVE protein 89.5 7.1 0.00015 45.9 14.7 116 284-427 30-156 (631)
378 PF14781 BBS2_N: Ciliary BBSom 89.0 16 0.00035 33.8 13.6 124 287-432 2-130 (136)
379 COG3490 Uncharacterized protei 88.8 6.7 0.00014 40.8 12.1 61 239-310 121-186 (366)
380 PF10313 DUF2415: Uncharacteri 88.1 1.3 2.9E-05 32.1 4.9 31 347-377 1-34 (43)
381 PF00930 DPPIV_N: Dipeptidyl p 88.0 47 0.001 36.6 26.7 70 239-312 50-130 (353)
382 KOG2444 WD40 repeat protein [G 87.9 1.4 3.1E-05 44.2 6.6 103 243-376 70-177 (238)
383 PF05694 SBP56: 56kDa selenium 87.5 28 0.0006 38.9 16.7 33 346-378 311-344 (461)
384 COG0823 TolB Periplasmic compo 87.3 28 0.00061 39.4 17.5 156 193-379 193-361 (425)
385 PF12234 Rav1p_C: RAVE protein 86.9 40 0.00087 39.8 18.7 74 348-427 31-104 (631)
386 PF10647 Gmad1: Lipoprotein Lp 86.8 41 0.00088 35.2 17.4 151 194-369 25-188 (253)
387 PF10168 Nup88: Nuclear pore c 86.7 67 0.0014 39.0 20.9 32 133-164 149-180 (717)
388 KOG4441 Proteins containing BT 86.4 70 0.0015 37.8 20.8 67 239-315 472-548 (571)
389 PF14870 PSII_BNR: Photosynthe 86.4 51 0.0011 35.4 26.6 185 202-424 113-301 (302)
390 COG3386 Gluconolactonase [Carb 86.3 52 0.0011 35.4 24.4 110 285-417 164-275 (307)
391 KOG3630 Nuclear pore complex, 86.2 7.2 0.00016 47.7 12.1 96 284-401 156-253 (1405)
392 KOG1897 Damage-specific DNA bi 85.8 96 0.0021 38.0 36.1 171 230-433 484-664 (1096)
393 PF08728 CRT10: CRT10; InterP 85.8 19 0.00041 42.9 15.4 116 242-375 113-245 (717)
394 PF10313 DUF2415: Uncharacteri 85.8 2.2 4.8E-05 31.0 4.9 32 284-315 1-35 (43)
395 PF14655 RAB3GAP2_N: Rab3 GTPa 85.2 3.1 6.7E-05 46.6 8.3 97 351-451 6-117 (415)
396 KOG3630 Nuclear pore complex, 85.1 11 0.00024 46.2 12.9 139 149-300 117-260 (1405)
397 PF08728 CRT10: CRT10; InterP 84.5 14 0.0003 44.0 13.5 136 285-426 102-245 (717)
398 COG0823 TolB Periplasmic compo 84.0 6 0.00013 44.7 10.1 104 197-313 242-358 (425)
399 KOG1900 Nuclear pore complex, 84.0 21 0.00044 44.8 14.9 156 239-428 87-273 (1311)
400 PF10168 Nup88: Nuclear pore c 83.4 1.2E+02 0.0025 37.0 23.6 90 284-379 85-182 (717)
401 KOG1900 Nuclear pore complex, 83.1 19 0.00041 45.1 14.1 77 186-262 172-273 (1311)
402 PHA02713 hypothetical protein; 82.5 43 0.00093 39.5 16.8 68 239-316 460-536 (557)
403 PF11635 Med16: Mediator compl 82.2 1.3E+02 0.0029 36.8 23.1 41 344-384 257-297 (753)
404 PF10395 Utp8: Utp8 family; I 82.0 1.2E+02 0.0026 36.1 20.9 160 391-592 129-307 (670)
405 KOG1916 Nuclear protein, conta 81.8 1.5 3.2E-05 51.9 4.1 156 253-432 153-328 (1283)
406 PF00930 DPPIV_N: Dipeptidyl p 81.0 93 0.002 34.2 21.8 32 13-46 42-73 (353)
407 COG3391 Uncharacterized conser 81.0 98 0.0021 34.5 24.2 203 196-435 77-291 (381)
408 KOG2395 Protein involved in va 80.9 25 0.00055 39.7 12.9 120 344-499 373-500 (644)
409 PF07569 Hira: TUP1-like enhan 80.5 7.3 0.00016 39.8 8.4 76 346-430 12-98 (219)
410 cd00216 PQQ_DH Dehydrogenases 79.8 1.2E+02 0.0027 35.0 31.3 62 360-435 303-382 (488)
411 TIGR03118 PEPCTERM_chp_1 conse 79.4 92 0.002 33.2 21.3 181 245-436 102-288 (336)
412 PF12657 TFIIIC_delta: Transcr 79.3 9 0.0002 37.5 8.3 36 393-428 87-122 (173)
413 PF06977 SdiA-regulated: SdiA- 78.7 88 0.0019 32.6 23.8 174 233-435 21-208 (248)
414 PF05096 Glu_cyclase_2: Glutam 78.7 90 0.0019 32.7 17.6 155 239-435 52-211 (264)
415 KOG4441 Proteins containing BT 78.1 1E+02 0.0022 36.4 18.0 67 239-315 424-501 (571)
416 COG3204 Uncharacterized protei 78.1 98 0.0021 32.8 17.6 174 190-378 83-265 (316)
417 PF15390 DUF4613: Domain of un 78.0 74 0.0016 36.8 15.5 73 287-379 116-189 (671)
418 KOG4499 Ca2+-binding protein R 77.5 88 0.0019 31.9 20.6 100 287-401 161-263 (310)
419 KOG4460 Nuclear pore complex, 77.3 40 0.00087 38.1 13.0 95 284-384 104-206 (741)
420 KOG1916 Nuclear protein, conta 76.9 4.9 0.00011 47.8 6.2 62 198-260 189-264 (1283)
421 PF14761 HPS3_N: Hermansky-Pud 76.8 73 0.0016 32.1 13.7 50 296-365 29-78 (215)
422 PF10647 Gmad1: Lipoprotein Lp 76.6 1E+02 0.0022 32.2 19.3 133 239-401 31-175 (253)
423 PHA02713 hypothetical protein; 75.8 74 0.0016 37.5 16.1 57 239-305 348-409 (557)
424 KOG3616 Selective LIM binding 75.5 27 0.00059 40.9 11.4 111 284-426 15-125 (1636)
425 PF11715 Nup160: Nucleoporin N 71.4 17 0.00036 42.8 9.4 81 356-438 156-259 (547)
426 PF15390 DUF4613: Domain of un 70.9 2.1E+02 0.0046 33.3 16.8 113 191-312 55-185 (671)
427 COG3386 Gluconolactonase [Carb 70.5 1.6E+02 0.0035 31.7 22.1 83 349-438 165-253 (307)
428 KOG2247 WD40 repeat-containing 70.1 0.93 2E-05 50.1 -1.4 143 200-376 42-188 (615)
429 PF10214 Rrn6: RNA polymerase 69.0 2.9E+02 0.0062 34.1 19.8 131 284-428 146-277 (765)
430 PF12768 Rax2: Cortical protei 68.2 1.5E+02 0.0032 31.5 14.5 81 346-431 36-127 (281)
431 PF14583 Pectate_lyase22: Olig 66.2 1.9E+02 0.004 32.2 15.0 98 194-304 189-303 (386)
432 TIGR03075 PQQ_enz_alc_DH PQQ-d 66.1 76 0.0017 37.1 13.1 74 358-437 120-199 (527)
433 PF07569 Hira: TUP1-like enhan 65.2 20 0.00044 36.5 7.2 80 291-379 18-98 (219)
434 PRK13684 Ycf48-like protein; P 65.1 2.1E+02 0.0046 31.2 22.7 155 233-427 172-331 (334)
435 COG4590 ABC-type uncharacteriz 65.1 2.2E+02 0.0048 31.9 15.0 199 147-379 180-389 (733)
436 PF14779 BBS1: Ciliary BBSome 64.3 38 0.00083 35.2 8.9 73 346-424 176-255 (257)
437 PF11715 Nup160: Nucleoporin N 63.3 9.4 0.0002 44.9 5.0 94 293-387 156-259 (547)
438 KOG1983 Tomosyn and related SN 63.2 78 0.0017 40.0 13.0 78 186-266 192-269 (993)
439 PF02897 Peptidase_S9_N: Proly 62.8 2.6E+02 0.0056 31.3 22.9 114 285-429 125-262 (414)
440 TIGR03075 PQQ_enz_alc_DH PQQ-d 61.7 3.2E+02 0.0069 32.0 30.7 60 368-437 441-500 (527)
441 PF12768 Rax2: Cortical protei 60.7 2.3E+02 0.005 30.1 14.6 121 253-402 16-147 (281)
442 KOG4460 Nuclear pore complex, 59.9 2E+02 0.0042 33.0 13.7 84 348-434 105-205 (741)
443 PHA03098 kelch-like protein; P 59.3 3.4E+02 0.0075 31.6 18.9 66 240-315 292-368 (534)
444 PF01011 PQQ: PQQ enzyme repea 59.2 26 0.00057 24.5 4.8 26 411-436 2-27 (38)
445 PF14727 PHTB1_N: PTHB1 N-term 58.0 3.2E+02 0.0069 30.9 31.9 132 12-164 18-164 (418)
446 PHA03098 kelch-like protein; P 57.4 3.7E+02 0.008 31.4 17.8 67 239-315 434-513 (534)
447 PF14781 BBS2_N: Ciliary BBSom 55.7 1.8E+02 0.0038 27.1 12.8 117 240-383 7-132 (136)
448 PHA02790 Kelch-like protein; P 51.8 2.5E+02 0.0053 32.4 14.0 66 240-315 316-386 (480)
449 smart00564 PQQ beta-propeller 51.0 31 0.00068 22.8 4.0 26 409-434 6-31 (33)
450 PF14870 PSII_BNR: Photosynthe 50.5 3.5E+02 0.0076 29.1 32.0 139 284-452 145-285 (302)
451 TIGR03074 PQQ_membr_DH membran 50.1 2.2E+02 0.0048 34.9 13.6 79 358-436 260-353 (764)
452 KOG2377 Uncharacterized conser 50.0 2E+02 0.0043 32.4 11.6 74 282-374 65-138 (657)
453 PF10214 Rrn6: RNA polymerase 47.6 6.3E+02 0.014 31.2 25.0 78 347-431 146-236 (765)
454 smart00564 PQQ beta-propeller 47.0 40 0.00086 22.3 4.0 24 360-383 8-31 (33)
455 KOG0861 SNARE protein YKT6, sy 43.0 23 0.00049 34.0 2.9 39 775-813 151-189 (198)
456 PF08801 Nucleoporin_N: Nup133 41.9 5.5E+02 0.012 28.9 17.1 30 348-377 191-220 (422)
457 PF01011 PQQ: PQQ enzyme repea 41.8 56 0.0012 22.8 4.2 27 360-386 2-28 (38)
458 KOG3522 Predicted guanine nucl 40.7 95 0.0021 37.4 8.0 151 243-427 547-697 (925)
459 PF14779 BBS1: Ciliary BBSome 40.0 1.3E+02 0.0027 31.5 8.1 44 391-434 176-220 (257)
460 COG3490 Uncharacterized protei 39.8 4.9E+02 0.011 27.7 18.4 40 346-385 279-319 (366)
461 PF07250 Glyoxal_oxid_N: Glyox 39.6 4.5E+02 0.0098 27.2 15.2 126 239-384 74-205 (243)
462 PF07676 PD40: WD40-like Beta 39.4 73 0.0016 22.1 4.6 29 12-41 7-38 (39)
463 TIGR02276 beta_rpt_yvtn 40-res 39.3 87 0.0019 21.8 5.1 30 356-385 1-31 (42)
464 TIGR03606 non_repeat_PQQ dehyd 39.1 6.3E+02 0.014 28.9 14.2 54 239-295 37-90 (454)
465 COG3204 Uncharacterized protei 38.0 5.3E+02 0.011 27.5 19.9 176 231-434 83-269 (316)
466 COG1520 FOG: WD40-like repeat 37.6 4.3E+02 0.0092 29.1 12.7 69 357-435 111-179 (370)
467 PLN00033 photosystem II stabil 36.8 6.5E+02 0.014 28.2 24.4 113 284-424 281-396 (398)
468 PF02897 Peptidase_S9_N: Proly 36.4 6.4E+02 0.014 28.1 29.0 110 239-378 131-262 (414)
469 TIGR03074 PQQ_membr_DH membran 35.8 1.6E+02 0.0035 36.1 9.4 78 358-435 194-286 (764)
470 KOG4499 Ca2+-binding protein R 35.3 4.7E+02 0.01 27.0 10.8 90 239-355 165-262 (310)
471 PF07995 GSDH: Glucose / Sorbo 34.9 6.2E+02 0.013 27.5 13.5 26 285-311 3-28 (331)
472 KOG2280 Vacuolar assembly/sort 33.2 9.5E+02 0.021 29.1 18.2 148 141-314 90-247 (829)
473 PF12341 DUF3639: Protein of u 32.5 94 0.002 20.3 3.6 25 348-374 3-27 (27)
474 PF00957 Synaptobrevin: Synapt 32.1 70 0.0015 27.2 4.2 49 775-823 10-58 (89)
475 KOG2247 WD40 repeat-containing 31.8 5.8 0.00013 44.2 -3.2 146 239-427 42-188 (615)
476 KOG2377 Uncharacterized conser 31.4 4.4E+02 0.0095 29.8 10.7 55 346-401 66-122 (657)
477 COG5167 VID27 Protein involved 30.1 6E+02 0.013 29.2 11.6 102 361-499 530-632 (776)
478 PF05694 SBP56: 56kDa selenium 29.7 8.7E+02 0.019 27.5 20.7 68 528-599 322-398 (461)
479 PF13570 PQQ_3: PQQ-like domai 29.1 80 0.0017 22.1 3.4 20 409-428 21-40 (40)
480 PF12657 TFIIIC_delta: Transcr 28.6 2.3E+02 0.005 27.5 7.7 30 348-377 87-122 (173)
481 PF12352 V-SNARE_C: Snare regi 28.5 94 0.002 24.7 4.1 45 775-823 22-66 (66)
482 PF14583 Pectate_lyase22: Olig 28.0 2.5E+02 0.0054 31.2 8.3 74 353-435 42-118 (386)
483 TIGR03118 PEPCTERM_chp_1 conse 27.0 8.2E+02 0.018 26.4 21.9 46 357-402 260-308 (336)
484 TIGR03548 mutarot_permut cycli 26.7 8.1E+02 0.018 26.2 13.1 25 356-380 170-198 (323)
485 COG5308 NUP170 Nuclear pore co 26.6 3.1E+02 0.0067 33.6 9.1 135 347-498 182-340 (1263)
486 KOG2063 Vacuolar assembly/sort 26.5 1.3E+03 0.029 28.7 15.3 27 408-435 250-276 (877)
487 PHA02790 Kelch-like protein; P 25.9 1E+03 0.023 27.2 17.9 63 241-313 270-339 (480)
488 TIGR02604 Piru_Ver_Nterm putat 25.3 9.4E+02 0.02 26.4 16.0 16 348-363 125-140 (367)
489 KOG3616 Selective LIM binding 23.4 1.2E+02 0.0027 35.8 5.1 26 239-264 22-47 (1636)
490 TIGR00161 conserved hypothetic 22.4 1.2E+02 0.0026 31.4 4.5 44 779-822 184-227 (238)
491 PF01436 NHL: NHL repeat; Int 22.1 1.8E+02 0.0039 18.7 3.7 23 350-372 5-27 (28)
492 PF10433 MMS1_N: Mono-function 21.3 1.3E+03 0.028 26.6 23.6 111 292-425 219-340 (504)
493 TIGR02604 Piru_Ver_Nterm putat 20.8 1.1E+03 0.024 25.8 15.4 17 285-301 15-31 (367)
494 KOG2109 WD40 repeat protein [G 20.8 46 0.00099 38.8 1.1 81 278-369 310-391 (788)
495 KOG1898 Splicing factor 3b, su 20.5 1.7E+03 0.036 28.3 13.7 107 289-426 939-1047(1205)
496 COG4575 ElaB Uncharacterized c 20.0 1.2E+02 0.0025 26.8 3.1 42 758-809 38-79 (104)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=272.36 Aligned_cols=299 Identities=16% Similarity=0.160 Sum_probs=231.4
Q ss_pred cccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCc
Q 003360 9 VYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKAS 88 (826)
Q Consensus 9 ~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g 88 (826)
...|+..|.|+.+ +|+|+.||+|+-|-+++|||+.+..... .-+.|+.-|.+++|.+ +|
T Consensus 111 ~~GH~e~Vl~~~f-sp~g~~l~tGsGD~TvR~WD~~TeTp~~----------------t~KgH~~WVlcvawsP----Dg 169 (480)
T KOG0271|consen 111 IAGHGEAVLSVQF-SPTGSRLVTGSGDTTVRLWDLDTETPLF----------------TCKGHKNWVLCVAWSP----DG 169 (480)
T ss_pred cCCCCCcEEEEEe-cCCCceEEecCCCceEEeeccCCCCcce----------------eecCCccEEEEEEECC----Cc
Confidence 3456779999998 6899999999999999999999852211 1234555677777765 22
Q ss_pred eEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHH
Q 003360 89 RLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERY 168 (826)
Q Consensus 89 ~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~ 168 (826)
..+ ..++.+|+|.+||..+
T Consensus 170 k~i---------------------------------------------------------ASG~~dg~I~lwdpkt---- 188 (480)
T KOG0271|consen 170 KKI---------------------------------------------------------ASGSKDGSIRLWDPKT---- 188 (480)
T ss_pred chh---------------------------------------------------------hccccCCeEEEecCCC----
Confidence 222 3345568888998766
Q ss_pred HhhccCCCCCCCCccceeeecccCCCEEEEEEe-----eCCCeEEEec-CCcEEEeccCCCceeecccccCCccee-eCC
Q 003360 169 LLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLI-----TGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS-HSK 241 (826)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs-----~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~-~s~ 241 (826)
..+.-..++.|...|++++|. |.++.+++++ |+.+++|+...........+|+..|+| ..-
T Consensus 189 ------------g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 189 ------------GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG 256 (480)
T ss_pred ------------CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc
Confidence 223344578999999999995 4678899988 999999987665444445899999999 444
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEe-----------CCCC--------------
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYD-----------GTSR-------------- 296 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fs-----------p~~~-------------- 296 (826)
...+|.+|+.|++||+|++..+.+ ...+.+|...|+.|+++ |.++
T Consensus 257 G~gliySgS~DrtIkvw~a~dG~~----------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 257 GEGLIYSGSQDRTIKVWRALDGKL----------CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred CCceEEecCCCceEEEEEccchhH----------HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 456999999999999999943331 12345788888888776 3333
Q ss_pred -----------EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe
Q 003360 297 -----------VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS 365 (826)
Q Consensus 297 -----------~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs 365 (826)
.|++|+.|.++.+|+-..... + + .+...|..-|..+.||||++++|+++
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk----------------p-i---~rmtgHq~lVn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK----------------P-I---TRMTGHQALVNHVSFSPDGRYIASAS 386 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEeccccccc----------------c-h---hhhhchhhheeeEEECCCccEEEEee
Confidence 499999999999999763321 1 1 34455677799999999999999999
Q ss_pred cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCC
Q 003360 366 DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPK 440 (826)
Q Consensus 366 ~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~ 440 (826)
-|..|++||-++|+.+.++ .+|-.+|..++|+. |+++|++|+.|.++++|++++.++..-+++|..
T Consensus 387 FDkSVkLW~g~tGk~lasf---RGHv~~VYqvawsa------DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~D 452 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFLASF---RGHVAAVYQVAWSA------DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHAD 452 (480)
T ss_pred cccceeeeeCCCcchhhhh---hhccceeEEEEecc------CccEEEEcCCCceEEEEEeeeeeecccCCCCCc
Confidence 9999999999999988555 48999999999998 799999999999999999998888777665544
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.7e-30 Score=267.82 Aligned_cols=220 Identities=18% Similarity=0.193 Sum_probs=188.9
Q ss_pred ecccCCCEEEEEEeeC--CCeEEEec-CCcEEEeccCC-CceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 188 MPFLDSSITAMKLITG--NSFILSSA-DEDYSLLAKSV-PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~--~~~l~~~~-d~~i~~w~~~~-~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
+.+|.+.|.++.|+|. +..+++++ |+++++|.... .++..+ .+|...|.. |+|+|++|+|++.|.+-|+||+.
T Consensus 213 l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~ 291 (459)
T KOG0272|consen 213 LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE 291 (459)
T ss_pred EeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCCCceeeecccccchhhcccc
Confidence 4678888999999998 45788988 99999997665 445555 889988888 99999999999999999999994
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.+.. +-.| ++|...|.+++|+|||.++++|+.|..-+|||++++.+. +.
T Consensus 292 tk~E-----lL~Q-----EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i---------------------m~ 340 (459)
T KOG0272|consen 292 TKSE-----LLLQ-----EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI---------------------MF 340 (459)
T ss_pred cchh-----hHhh-----cccccccceeEecCCCceeeccCccchhheeecccCcEE---------------------EE
Confidence 4432 1111 589999999999999999999999999999999966542 55
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
+..|..+|.+++|+|+|..||+|+.|++++|||++....++++. .|..-|+.+.|.|. .+.+|++++.|+++
T Consensus 341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip---AH~nlVS~Vk~~p~-----~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP---AHSNLVSQVKYSPQ-----EGYFLVTASYDNTV 412 (459)
T ss_pred ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc---cccchhhheEeccc-----CCeEEEEcccCcce
Confidence 55688899999999999999999999999999999999987664 89999999999983 48999999999999
Q ss_pred EEEECCCCceEEeeeccCCCCCcceEEEE
Q 003360 422 LVLDSDNGNMLSTNLIHPKKPSRALFMQI 450 (826)
Q Consensus 422 ~iwd~~tg~~i~~~~~~~~~~~~~lsi~~ 450 (826)
+||...++.+++++.+|.. +++++.+
T Consensus 413 kiWs~~~~~~~ksLaGHe~---kV~s~Di 438 (459)
T KOG0272|consen 413 KIWSTRTWSPLKSLAGHEG---KVISLDI 438 (459)
T ss_pred eeecCCCcccchhhcCCcc---ceEEEEe
Confidence 9999999999999888864 4566544
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.7e-30 Score=261.66 Aligned_cols=287 Identities=13% Similarity=0.160 Sum_probs=221.5
Q ss_pred ccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEee-eCCC
Q 003360 8 SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVY-ADGK 86 (826)
Q Consensus 8 ~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~-~~~~ 86 (826)
+...|..=|.|++| +|||+.||+|..||+|++||.+++.+.-. +-..|+.+|+.++|-. +-..
T Consensus 152 t~KgH~~WVlcvaw-sPDgk~iASG~~dg~I~lwdpktg~~~g~---------------~l~gH~K~It~Lawep~hl~p 215 (480)
T KOG0271|consen 152 TCKGHKNWVLCVAW-SPDGKKIASGSKDGSIRLWDPKTGQQIGR---------------ALRGHKKWITALAWEPLHLVP 215 (480)
T ss_pred eecCCccEEEEEEE-CCCcchhhccccCCeEEEecCCCCCcccc---------------cccCcccceeEEeecccccCC
Confidence 33445667899999 68999999999999999999998722111 1235677899999965 1111
Q ss_pred CceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHH
Q 003360 87 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 166 (826)
Q Consensus 87 ~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~ 166 (826)
..+ .+...+.+|.+.+||...
T Consensus 216 ~~r---------------------------------------------------------~las~skDg~vrIWd~~~-- 236 (480)
T KOG0271|consen 216 PCR---------------------------------------------------------RLASSSKDGSVRIWDTKL-- 236 (480)
T ss_pred Ccc---------------------------------------------------------ceecccCCCCEEEEEccC--
Confidence 111 223345567788888765
Q ss_pred HHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee-------
Q 003360 167 RYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS------- 238 (826)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~------- 238 (826)
....+.+.+|..+|||+++--+| ++.+++ |++|++|+...+.+.....+|...|+.
T Consensus 237 ---------------~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy 300 (480)
T KOG0271|consen 237 ---------------GTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDY 300 (480)
T ss_pred ---------------ceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchh
Confidence 11345678999999999987543 567788 999999976544433333677777644
Q ss_pred ------eCCCCCE-------------------------EEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCe
Q 003360 239 ------HSKVKNL-------------------------FITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPL 286 (826)
Q Consensus 239 ------~s~~~~~-------------------------l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V 286 (826)
|.+.++. |++|+.|+++.+|+.. ... + .....+|..-|
T Consensus 301 ~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--p--------i~rmtgHq~lV 370 (480)
T KOG0271|consen 301 VLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--P--------ITRMTGHQALV 370 (480)
T ss_pred hhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc--c--------hhhhhchhhhe
Confidence 4454444 9999999999999982 221 1 22346888999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec
Q 003360 287 TALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD 366 (826)
Q Consensus 287 ~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~ 366 (826)
+.+.|+||++++|+++.|..|++|+-++++.. ..+..|-++|.-++|+.|.++|++|+.
T Consensus 371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l---------------------asfRGHv~~VYqvawsaDsRLlVS~Sk 429 (480)
T KOG0271|consen 371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFL---------------------ASFRGHVAAVYQVAWSADSRLLVSGSK 429 (480)
T ss_pred eeEEECCCccEEEEeecccceeeeeCCCcchh---------------------hhhhhccceeEEEEeccCccEEEEcCC
Confidence 99999999999999999999999999966552 344557889999999999999999999
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
|.+++|||+++.++.+.. .+|...|.++.|+| ||..+++|+.|..+++|.
T Consensus 430 DsTLKvw~V~tkKl~~DL---pGh~DEVf~vDwsp------DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 430 DSTLKVWDVRTKKLKQDL---PGHADEVFAVDWSP------DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceEEEEEeeeeeecccC---CCCCceEEEEEecC------CCceeecCCCceEEEeec
Confidence 999999999999887433 38999999999999 799999999999999995
No 4
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4e-28 Score=265.31 Aligned_cols=430 Identities=18% Similarity=0.215 Sum_probs=271.9
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
.+.|.|++| +|||++||+|. .+.+.+|-.+... .. ...| ..+...+..+-..|+.+.|.. +.++++
T Consensus 96 k~~v~~i~f-SPng~~fav~~-gn~lqiw~~P~~~------~~-~~~p-Fvl~r~~~g~fddi~si~Ws~----DSr~l~ 161 (893)
T KOG0291|consen 96 KRGVGAIKF-SPNGKFFAVGC-GNLLQIWHAPGEI------KN-EFNP-FVLHRTYLGHFDDITSIDWSD----DSRLLV 161 (893)
T ss_pred cCccceEEE-CCCCcEEEEEe-cceeEEEecCcch------hc-ccCc-ceEeeeecCCccceeEEEecc----CCceEE
Confidence 568999999 79999999985 5689999776531 10 1112 122223445567799999986 788999
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch---------
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC--------- 163 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~--------- 163 (826)
.|++|. ...+...+.........+. .....++...+ ..++..+++++.+|.+++|.-.
T Consensus 162 ~gsrD~----s~rl~~v~~~k~~~~~~l~-gHkd~VvacfF--------~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~ 228 (893)
T KOG0291|consen 162 TGSRDL----SARLFGVDGNKNLFTYALN-GHKDYVVACFF--------GANSLDLYTVSKDGALFVWTCDLRPPELDKA 228 (893)
T ss_pred eccccc----eEEEEEeccccccceEecc-CCCcceEEEEe--------ccCcceEEEEecCceEEEEEecCCCcccccc
Confidence 988865 2222222222211111110 11122222111 1223346666777777766322
Q ss_pred ---------------hHH-----------H-HHhhccCC--------------------C---CCCCCccceeeecccCC
Q 003360 164 ---------------QIE-----------R-YLLQYQSR--------------------S---PPSAPKEVMLKMPFLDS 193 (826)
Q Consensus 164 ---------------~i~-----------~-~~~~~~~~--------------------~---~~~~~~~~~~~l~~h~~ 193 (826)
.-+ + ++-+.+.+ . +..+.......+...+.
T Consensus 229 ~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~ 308 (893)
T KOG0291|consen 229 EKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ 308 (893)
T ss_pred cccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc
Confidence 000 0 00000000 0 00011112223445567
Q ss_pred CEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeee
Q 003360 194 SITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLIL 269 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~ 269 (826)
+|..++|+..|.+++.|+ -|.+.+|..+...+..-..+|...+.+ ++|||++||||+.||.|||||......
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC---- 384 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC---- 384 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE----
Confidence 888999999999999988 457999987765555556889999999 999999999999999999999944431
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC------ccccceEEEeecCCC----------C
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH------AIENSFLSFTGSKKG----------N 333 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~------~~~~~~~~i~~s~~~----------~ 333 (826)
..+|..|...|+.+.|+..++.+++++-||+||.||+....+ ..+.++.+++..+.| .
T Consensus 385 ------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 385 ------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred ------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence 113567999999999999999999999999999999987632 122233344333323 2
Q ss_pred eEEEEEEEE-------eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE-EeeecccCCCCCeeEEEEeecccC
Q 003360 334 SHIIHSVKV-------MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL-YQKHIASDISSGIVSLQFETCSLQ 405 (826)
Q Consensus 334 ~~~~~~~~~-------~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l-~~~~~~~~~~~~V~sl~f~~~~~~ 405 (826)
...++.++. ..|.+||.+|+|+|++..||+||+|.+||+||+-...-. -+. .+..-+..+.|.|
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl----~i~sdvl~vsfrP---- 530 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL----EIRSDVLAVSFRP---- 530 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE----eeccceeEEEEcC----
Confidence 233444433 357899999999999999999999999999998654211 111 3455789999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEE
Q 003360 406 GFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFV 485 (826)
Q Consensus 406 ~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 485 (826)
||..|++++.||.|.+||...+..+.++.+.......-.....+. -++-+..+....+ ..+.++.++
T Consensus 531 --dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~t----------a~~sa~~K~Ftti-~ySaDG~~I 597 (893)
T KOG0291|consen 531 --DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRIT----------AENSAKGKTFTTI-CYSADGKCI 597 (893)
T ss_pred --CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceee----------hhhcccCCceEEE-EEcCCCCEE
Confidence 699999999999999999998777765433222111000000000 0001111222222 356677788
Q ss_pred EEeec-CcEEEEeccc
Q 003360 486 LLCSE-KAACAYSLSH 500 (826)
Q Consensus 486 v~~se-~~irv~sl~~ 500 (826)
+++++ +.|.||+++.
T Consensus 598 lAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 598 LAGGESNSICIYDVPE 613 (893)
T ss_pred EecCCcccEEEEECch
Confidence 88766 5899999985
No 5
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=99.97 E-value=1.2e-29 Score=278.14 Aligned_cols=324 Identities=20% Similarity=0.282 Sum_probs=195.8
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc-cc-------------------ceEEEeec-CCC-CeEEEEE-EE
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI-EN-------------------SFLSFTGS-KKG-NSHIIHS-VK 341 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~-~~-------------------~~~~i~~s-~~~-~~~~~~~-~~ 341 (826)
.|+.|+|++++..|++|..+|.|.||++..++... .. .+..+..- ..+ +.- +.. ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~g-f~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEG-FLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEE-EEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccc-cCchhh
Confidence 68999999999999999999999999998774432 00 01111100 000 000 000 11
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc-----CCCCCeeEEEEeecccCC--CCCcEEEE
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS-----DISSGIVSLQFETCSLQG--FEKNFLVI 414 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~-----~~~~~V~sl~f~~~~~~~--~d~~~l~s 414 (826)
.....++|++++.|..| ++|+|+++|.+.|+|+|++.++|...+.. .....|++++|..+...+ +.+.+|++
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 12227899999999888 89999999999999999999999876654 245679999999875533 34689999
Q ss_pred EECCCcEEEEECC---CCceEEeeeccC-CCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeec
Q 003360 415 ATKDSSVLVLDSD---NGNMLSTNLIHP-KKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSE 490 (826)
Q Consensus 415 gs~Dg~V~iwd~~---tg~~i~~~~~~~-~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se 490 (826)
|++.|.+.+|.+. .|.+...+.... ...+.++.+..++.+++.++.++...+++++.+..++ +++++|++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~------g~vVvvSe 234 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIP------GYVVVVSE 234 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----------EEEEEE-S
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcC------cEEEEEcc
Confidence 9999999888654 355666665444 5678899999999888888888888888888888776 89999999
Q ss_pred CcEEEEeccccccccceeeeeeecCCCCceeeEeee----eCCceEEEEEEeeceEEEeccCCccccccccccceeecCC
Q 003360 491 KAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFY----SGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTP 566 (826)
Q Consensus 491 ~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~----~~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~ 566 (826)
+++|||+++ +.+..+|.. ....+|....+. ...+.+|++++.+|+|+++|||+|++|.+.++. +
T Consensus 235 ~~irv~~~~-----~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~------~ 302 (395)
T PF08596_consen 235 SDIRVFKPP-----KSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP------P 302 (395)
T ss_dssp SEEEEE-TT--------EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S------S
T ss_pred cceEEEeCC-----CCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC------C
Confidence 999999999 666777765 312333333332 257999999999999999999999999996443 3
Q ss_pred CCCCCcccceeccCCCcEEEEcCCeeeeeeeecccCCc--cccCCCccccCCCCcCcccccccc
Q 003360 567 KPNSLSNTLMCSSWDGELIMVNGNQEAFFISALRQRDF--FRFLDSACQVYSYDPTLLQEGVVS 628 (826)
Q Consensus 567 ~~~~~~~~~~~~s~~G~i~~~~g~~e~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~ 628 (826)
..+..+.+..+++++|++++|+||+|++++++|++... .....+.|+||||++..|+||+|+
T Consensus 303 ~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~~~~~~~~~~~~~d~L~np~~~ip~rP~~s 366 (395)
T PF08596_consen 303 PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWGEGRTGSSLLAPPTDTLYNPNLIIPPRPTIS 366 (395)
T ss_dssp ---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES--------------B---TT----------
T ss_pred ccccccccccEECCCCCEEEEeCcccEEEEEEEccCCccccccCCCCCeEECCCCCCCCcCccc
Confidence 34556678889999999999999999999999999866 344678999999999999999864
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=7.9e-27 Score=246.36 Aligned_cols=356 Identities=16% Similarity=0.215 Sum_probs=243.2
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEE
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLY 91 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ll 91 (826)
|+.-.+.++-.+|+|-++|+|...|.|+|||.-.. ..+.|-++. .-..||..+.|.. +.-++.
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~------------~hiLKnef~--v~aG~I~Di~Wd~---ds~RI~ 119 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK------------EHILKNEFQ--VLAGPIKDISWDF---DSKRIA 119 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEeccCc------------ceeeeeeee--ecccccccceeCC---CCcEEE
Confidence 45555566666899999999999999999987652 122332211 1234899999965 223444
Q ss_pred EEccCCcCccceeEEEEcccCCcc--------eeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 92 IMGASDFVSMNLLQIVLLNEQTES--------RTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 92 i~gg~~~~~~~~~~vl~~~~~~~~--------~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
+.| .. .+..-.+..++..+.. +..-..+... ++-.++.++.++.+.+|+.
T Consensus 120 avG-EG--rerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps------------------RPfRi~T~sdDn~v~ffeG- 177 (603)
T KOG0318|consen 120 AVG-EG--RERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS------------------RPFRIATGSDDNTVAFFEG- 177 (603)
T ss_pred EEe-cC--ccceeEEEEecCCCccceeeccceeEeeeeccCC------------------CceEEEeccCCCeEEEeeC-
Confidence 443 21 1222333333322211 0111122222 2233455666677777544
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec---ccccCCccee-
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF---ETKLKDGSQS- 238 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~---~~~h~g~V~~- 238 (826)
+|..+..+...|...|.|+.|+|||..+++++ |+.+.+|+.+....... ..+|+|+|.+
T Consensus 178 ----------------PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfal 241 (603)
T KOG0318|consen 178 ----------------PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFAL 241 (603)
T ss_pred ----------------CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEE
Confidence 25567777889999999999999999999988 99999998776554433 3579999999
Q ss_pred -eCCCCCEEEEEECCCcEEEEeCCCCceeeeeec---------------------------------ccccccccccCCC
Q 003360 239 -HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL---------------------------------KQQSEKDFSLSGI 284 (826)
Q Consensus 239 -~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l---------------------------------~~~~~~~~~~h~~ 284 (826)
|+||+..++|++.|.++||||++...+.....+ .......+.+|..
T Consensus 242 sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK 321 (603)
T KOG0318|consen 242 SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK 321 (603)
T ss_pred EECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc
Confidence 999999999999999999999854432111100 0111234678889
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc------cccceEEEeec-----------------------------
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA------IENSFLSFTGS----------------------------- 329 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~------~~~~~~~i~~s----------------------------- 329 (826)
.|+++..+|++.+|.+|+.||.|.-|+..++... |.+.+..+..+
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~ 401 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV 401 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce
Confidence 9999999999999999999999999999877322 22222221110
Q ss_pred -------------CCCCe-----------------------------------------------EEEEE---------E
Q 003360 330 -------------KKGNS-----------------------------------------------HIIHS---------V 340 (826)
Q Consensus 330 -------------~~~~~-----------------------------------------------~~~~~---------~ 340 (826)
.++.. +.++. .
T Consensus 402 ~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~ 481 (603)
T KOG0318|consen 402 VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEA 481 (603)
T ss_pred eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccccee
Confidence 11100 00000 2
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
+...|.++|+++++|||+.+||+|...+.|.+||..+.... ...+ .-|.+.|.+++|+| ++.++++|+.|..
T Consensus 482 ~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~-~~~w-~FHtakI~~~aWsP------~n~~vATGSlDt~ 553 (603)
T KOG0318|consen 482 KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK-TNRW-AFHTAKINCVAWSP------NNKLVATGSLDTN 553 (603)
T ss_pred eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee-ccee-eeeeeeEEEEEeCC------CceEEEeccccce
Confidence 34456788999999999999999999999999999888763 2222 24888999999999 5899999999999
Q ss_pred EEEEECCCCc
Q 003360 421 VLVLDSDNGN 430 (826)
Q Consensus 421 V~iwd~~tg~ 430 (826)
|.||++....
T Consensus 554 Viiysv~kP~ 563 (603)
T KOG0318|consen 554 VIIYSVKKPA 563 (603)
T ss_pred EEEEEccChh
Confidence 9999998543
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.7e-29 Score=257.95 Aligned_cols=274 Identities=12% Similarity=0.126 Sum_probs=215.2
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-CceeecccccCCccee--eCCC--CCEEEEEECCCcEEEEeCCCC
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-PPLLDFETKLKDGSQS--HSKV--KNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-~~~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~DGtVriWD~s~~ 263 (826)
+-+.+|+.+.|+.++..+++|+ +|.+++|+... +....+ .+|++.|.+ |+|. +.-||||+.||+|++|+++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 3457899999999999999999 99999996544 444455 899999999 9997 568999999999999999665
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
.. ..++.+|...|..++|+|+|++|++++.|.+-++||+++.... +...
T Consensus 252 ~~----------l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El---------------------L~QE 300 (459)
T KOG0272|consen 252 TP----------LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL---------------------LLQE 300 (459)
T ss_pred cc----------hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhh---------------------Hhhc
Confidence 42 2345689999999999999999999999999999999965332 3344
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.|...|.+++|.+||.++++|+.|..-+|||++++.++..+ .+|..+|.+++|+| +|..|++|+.|++++|
T Consensus 301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L---~gH~k~I~~V~fsP------NGy~lATgs~Dnt~kV 371 (459)
T KOG0272|consen 301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL---AGHIKEILSVAFSP------NGYHLATGSSDNTCKV 371 (459)
T ss_pred ccccccceeEecCCCceeeccCccchhheeecccCcEEEEe---cccccceeeEeECC------CceEEeecCCCCcEEE
Confidence 56778999999999999999999999999999999999444 47999999999999 4999999999999999
Q ss_pred EECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEeccc--
Q 003360 424 LDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSH-- 500 (826)
Q Consensus 424 wd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~-- 500 (826)
||++.-+.+.+.+.|.+..+.+.. ....+.|++.|+ |+.++||+..+
T Consensus 372 WDLR~r~~ly~ipAH~nlVS~Vk~------------------------------~p~~g~fL~TasyD~t~kiWs~~~~~ 421 (459)
T KOG0272|consen 372 WDLRMRSELYTIPAHSNLVSQVKY------------------------------SPQEGYFLVTASYDNTVKIWSTRTWS 421 (459)
T ss_pred eeecccccceecccccchhhheEe------------------------------cccCCeEEEEcccCcceeeecCCCcc
Confidence 999987787777666655332211 112345666665 56899999763
Q ss_pred ---cccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEec
Q 003360 501 ---AVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRS 546 (826)
Q Consensus 501 ---~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~s 546 (826)
.++|+...+-.+. .++++..++...-|..|++|.
T Consensus 422 ~~ksLaGHe~kV~s~D------------is~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 422 PLKSLAGHEGKVISLD------------ISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cchhhcCCccceEEEE------------eccCCceEEEeccCceeeecc
Confidence 1233322222211 125677777777788888763
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=235.15 Aligned_cols=289 Identities=15% Similarity=0.215 Sum_probs=217.5
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEee--eC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVY--AD 84 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~--~~ 84 (826)
.+++.|-.+|.++-| ++|+++|++++.||.+.+||.-+... +..+.+.+ .|+. +.
T Consensus 49 r~LkGH~~Ki~~~~w-s~Dsr~ivSaSqDGklIvWDs~TtnK------------~haipl~s----------~WVMtCA~ 105 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDW-STDSRRIVSASQDGKLIVWDSFTTNK------------VHAIPLPS----------SWVMTCAY 105 (343)
T ss_pred EEecccccceeeeEe-cCCcCeEEeeccCCeEEEEEcccccc------------eeEEecCc----------eeEEEEEE
Confidence 356678889999999 57999999999999999999887410 00111111 3532 45
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchh
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~ 164 (826)
...|.+..+||-+. .-+|..+..... +|
T Consensus 106 sPSg~~VAcGGLdN----~Csiy~ls~~d~---------------------------------------~g--------- 133 (343)
T KOG0286|consen 106 SPSGNFVACGGLDN----KCSIYPLSTRDA---------------------------------------EG--------- 133 (343)
T ss_pred CCCCCeEEecCcCc----eeEEEecccccc---------------------------------------cc---------
Confidence 55677777888743 222222211100 00
Q ss_pred HHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCC
Q 003360 165 IERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSK 241 (826)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~ 241 (826)
.......+++|.+.+.|+.|..|+ .|++++ |.++.+|+...........+|.+.|.+ ++|
T Consensus 134 ----------------~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 134 ----------------NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred ----------------cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence 001223368999999999999855 456665 999999987655544444899999999 888
Q ss_pred -CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 242 -VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 242 -~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
+++.+++|+.|++.++||+..... ++.|.+|...|++|+|.|+|.-|++|+.|++.|+||++.....
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c----------~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-- 264 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQC----------VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-- 264 (343)
T ss_pred CCCCeEEecccccceeeeeccCcce----------eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE--
Confidence 999999999999999999943331 3456789999999999999999999999999999999954321
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
.. ........+|++++||-.|++|.+|+.|.++.|||.-.++.+-.. .+|...|+++..+
T Consensus 265 -----a~------------ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L---~GHeNRvScl~~s 324 (343)
T KOG0286|consen 265 -----AV------------YSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL---AGHENRVSCLGVS 324 (343)
T ss_pred -----ee------------eccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe---eccCCeeEEEEEC
Confidence 00 111122567999999999999999999999999999888777333 4999999999999
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEE
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
| ||..+.+|++|.+++||.
T Consensus 325 ~------DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 325 P------DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred C------CCcEEEecchhHheeecC
Confidence 9 799999999999999994
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=8.9e-25 Score=239.28 Aligned_cols=449 Identities=16% Similarity=0.154 Sum_probs=321.8
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
.+.|++++- +|+|.+|++..+.|...+=++... .-+.++.+ +.||.++.|++ +|++++
T Consensus 55 ~~NI~~ial-Sp~g~lllavdE~g~~~lvs~~~r------------~Vlh~f~f-----k~~v~~i~fSP----ng~~fa 112 (893)
T KOG0291|consen 55 RYNITRIAL-SPDGTLLLAVDERGRALLVSLLSR------------SVLHRFNF-----KRGVGAIKFSP----NGKFFA 112 (893)
T ss_pred CCceEEEEe-CCCceEEEEEcCCCcEEEEecccc------------eeeEEEee-----cCccceEEECC----CCcEEE
Confidence 678999996 899999999999999999766552 01112222 34788888876 678887
Q ss_pred EccCCcCccceeEEEEcccCCc--ceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHh
Q 003360 93 MGASDFVSMNLLQIVLLNEQTE--SRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~--~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~ 170 (826)
.|-. +.+++|....... ..-+...-..-+++-|++.+.-+ .+...+++++.+-...+|+....
T Consensus 113 v~~g-----n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws-----~DSr~l~~gsrD~s~rl~~v~~~----- 177 (893)
T KOG0291|consen 113 VGCG-----NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWS-----DDSRLLVTGSRDLSARLFGVDGN----- 177 (893)
T ss_pred EEec-----ceeEEEecCcchhcccCcceEeeeecCCccceeEEEec-----cCCceEEeccccceEEEEEeccc-----
Confidence 7654 4577776654433 11222233445677777766433 23345555677777778776653
Q ss_pred hccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC------------------------c-
Q 003360 171 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP------------------------P- 224 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~------------------------~- 224 (826)
.+..+..+.+|..+|-.+-|..+...+.+-+ ||.+.+|.-..+ .
T Consensus 178 ----------k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek 247 (893)
T KOG0291|consen 178 ----------KNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK 247 (893)
T ss_pred ----------cccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence 2334566799999999999999999999988 999999932200 0
Q ss_pred eeecccc---------cCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC
Q 003360 225 LLDFETK---------LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG 293 (826)
Q Consensus 225 ~~~~~~~---------h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp 293 (826)
...+.|. ....|++ ||+.-++|++|-..|...+|++..-.+ ++.+. ....+|..++|+.
T Consensus 248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l--ih~LS--------is~~~I~t~~~N~ 317 (893)
T KOG0291|consen 248 THKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL--IHSLS--------ISDQKILTVSFNS 317 (893)
T ss_pred hcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE--EEEee--------cccceeeEEEecc
Confidence 0000011 1144555 999999999999999999999954442 33333 3446899999999
Q ss_pred CCCEEEEEeCC-CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEE
Q 003360 294 TSRVLVSGDQS-GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYL 372 (826)
Q Consensus 294 ~~~~Lasgs~d-g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~v 372 (826)
.|.++|.|+.. |.+.||++....+. ++...|-..+++++++|||+++|+|++||.|+|
T Consensus 318 tGDWiA~g~~klgQLlVweWqsEsYV---------------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 318 TGDWIAFGCSKLGQLLVWEWQSESYV---------------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred cCCEEEEcCCccceEEEEEeecccee---------------------eeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 99999998765 89999999865442 566667778999999999999999999999999
Q ss_pred EecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEec
Q 003360 373 LDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILN 452 (826)
Q Consensus 373 wD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~ 452 (826)
||...+-|+.++. .|.+.|+.++|.. .++.+++.+.||+|+.||+...+...+|. .+.+...-|+..
T Consensus 377 Wn~~SgfC~vTFt---eHts~Vt~v~f~~------~g~~llssSLDGtVRAwDlkRYrNfRTft--~P~p~Qfscvav-- 443 (893)
T KOG0291|consen 377 WNTQSGFCFVTFT---EHTSGVTAVQFTA------RGNVLLSSSLDGTVRAWDLKRYRNFRTFT--SPEPIQFSCVAV-- 443 (893)
T ss_pred EeccCceEEEEec---cCCCceEEEEEEe------cCCEEEEeecCCeEEeeeecccceeeeec--CCCceeeeEEEE--
Confidence 9999999997775 8999999999999 49999999999999999999999988863 223222222221
Q ss_pred CCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC--cEEEEeccc-----cccccceeeeeeecCCCCceeeEee
Q 003360 453 GQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK--AACAYSLSH-----AVQGVKKVLYKKKFHSSSCCWASTF 525 (826)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~--~irv~sl~~-----~~~g~~k~~~k~~~~~~~c~~~~~~ 525 (826)
.+.+.+|++++.+ .|.||++.. .+.|+..++...-+.
T Consensus 444 --------------------------D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~---------- 487 (893)
T KOG0291|consen 444 --------------------------DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS---------- 487 (893)
T ss_pred --------------------------cCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc----------
Confidence 2344577777766 699999873 233444444333222
Q ss_pred eeCCceEEEEEEeeceEEEeccCCccccccc-----cccceeecCCCCCCCcccceeccCCCcEEEEcCCeeeee
Q 003360 526 YSGSDVGLMLLFTSGKFEIRSLPELSLLKET-----SIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFF 595 (826)
Q Consensus 526 ~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~-----sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e~~~ 595 (826)
+.+..|+...=|-+|++|++-+-....+. .+-.+.|. |++......+-||||-.|+...-+++
T Consensus 488 --~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfr-----PdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 488 --PDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFR-----PDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred --cccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEc-----CCCCeEEEEEecceEEEEEhhhceee
Confidence 45667777777888999887654333332 23367887 67888888899999999998666665
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=5.4e-26 Score=237.37 Aligned_cols=275 Identities=22% Similarity=0.304 Sum_probs=209.3
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
.+.||+|.|.+ +|++||||..||.+++|+.... +......|+.||..++|.. .|..++
T Consensus 235 nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~~G~-----------------l~~tl~~HkgPI~slKWnk----~G~yil 292 (524)
T KOG0273|consen 235 NKDVTSLDWNN-DGTLLATGSEDGEARIWNKDGN-----------------LISTLGQHKGPIFSLKWNK----KGTYIL 292 (524)
T ss_pred cCCcceEEecC-CCCeEEEeecCcEEEEEecCch-----------------hhhhhhccCCceEEEEEcC----CCCEEE
Confidence 68999999965 9999999999999999987763 1123456788999999964 233333
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
+||- +|..++||...
T Consensus 293 S~~v---------------------------------------------------------D~ttilwd~~~-------- 307 (524)
T KOG0273|consen 293 SGGV---------------------------------------------------------DGTTILWDAHT-------- 307 (524)
T ss_pred eccC---------------------------------------------------------CccEEEEeccC--------
Confidence 4433 23334454422
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC-CCceeecccccCCccee--eCCCCCEEEE
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS-VPPLLDFETKLKDGSQS--HSKVKNLFIT 248 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~-~~~~~~~~~~h~g~V~~--~s~~~~~l~T 248 (826)
.......++|..+--.+.|-.+..+ ++++ |+.|+++... ..+..++ .+|.+.|.+ |.|.+.+|+|
T Consensus 308 ---------g~~~q~f~~~s~~~lDVdW~~~~~F-~ts~td~~i~V~kv~~~~P~~t~-~GH~g~V~alk~n~tg~LLaS 376 (524)
T KOG0273|consen 308 ---------GTVKQQFEFHSAPALDVDWQSNDEF-ATSSTDGCIHVCKVGEDRPVKTF-IGHHGEVNALKWNPTGSLLAS 376 (524)
T ss_pred ---------ceEEEeeeeccCCccceEEecCceE-eecCCCceEEEEEecCCCcceee-ecccCceEEEEECCCCceEEE
Confidence 0122234556655444556555544 4444 8999998544 3456666 779999999 9999999999
Q ss_pred EECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCC---------CEEEEEeCCCcEEEEEeCCCCCc
Q 003360 249 GHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS---------RVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 249 gs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~---------~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
++.|+|++||.. .... ...+..|...|..+.|+|.+ ..+++++.|++|++||+..+.+
T Consensus 377 ~SdD~TlkiWs~~~~~~-----------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~- 444 (524)
T KOG0273|consen 377 CSDDGTLKIWSMGQSNS-----------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP- 444 (524)
T ss_pred ecCCCeeEeeecCCCcc-----------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce-
Confidence 999999999998 3333 22345788899999999965 4799999999999999984433
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEE
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 398 (826)
. ..+.+|..+|.+|+|+|+|.++|+|+-||.|.+|+++++++.... .....|..++
T Consensus 445 ----------------i----~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~----~~~~~Ifel~ 500 (524)
T KOG0273|consen 445 ----------------I----HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY----QGTGGIFELC 500 (524)
T ss_pred ----------------e----EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee----cCCCeEEEEE
Confidence 2 556789999999999999999999999999999999999988443 3455689999
Q ss_pred EeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 399 FETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|+. +++.|.++-+|+.+.+.|++
T Consensus 501 Wn~------~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 501 WNA------AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EcC------CCCEEEEEecCCCceEEEec
Confidence 988 58999999999999999875
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=3.4e-27 Score=261.21 Aligned_cols=202 Identities=17% Similarity=0.206 Sum_probs=174.5
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
.+-+|.++|..++|+|+.++|++++ |.++|+|............+|..+|+. |+|.|-++|||+.|++-|+|.....
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 3679999999999999999999999 999999976653333333699999999 9999999999999999999998332
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
. + ++ .+.+|-+.|.|++|+|++.++++||.|.+||+||+.++.. + -.+.
T Consensus 526 ~--P---lR-----ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-----------------V----RiF~ 574 (707)
T KOG0263|consen 526 K--P---LR-----IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-----------------V----RIFT 574 (707)
T ss_pred C--c---hh-----hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-----------------E----EEec
Confidence 2 1 22 2357889999999999999999999999999999985433 2 3345
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.|.++|++|+|||+|++||+|++||.|.+||+.++..+..+ .+|.+.|.++.|+. |+..|++|+.|.+|++
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l---~~Ht~ti~SlsFS~------dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL---KGHTGTIYSLSFSR------DGNVLASGGADNSVRL 645 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh---hcccCceeEEEEec------CCCEEEecCCCCeEEE
Confidence 68999999999999999999999999999999999888433 47899999999998 7999999999999999
Q ss_pred EECCC
Q 003360 424 LDSDN 428 (826)
Q Consensus 424 wd~~t 428 (826)
||...
T Consensus 646 WD~~~ 650 (707)
T KOG0263|consen 646 WDLTK 650 (707)
T ss_pred EEchh
Confidence 99874
No 12
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=7.1e-26 Score=247.93 Aligned_cols=424 Identities=14% Similarity=0.124 Sum_probs=284.3
Q ss_pred ccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCC
Q 003360 8 SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKA 87 (826)
Q Consensus 8 ~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~ 87 (826)
....|...|++|... +|+.-+++++-|-.+.+||+.+-...++...-+. -+.+..++= ..+.++
T Consensus 187 ~~~~H~S~vtsL~~~-~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~--------------~E~vv~l~~-~~~~~~ 250 (775)
T KOG0319|consen 187 TMILHKSAVTSLAFS-EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYES--------------LESVVRLRE-ELGGKG 250 (775)
T ss_pred HHHhhhhheeeeeec-cCCceEEEeccCcEEEEeehhhhhhhheechhhh--------------eeeEEEech-hcCCcc
Confidence 344577899999984 6999999999999999999965433333211111 111121110 112233
Q ss_pred ceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 88 SRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 88 g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
+.++..||+.. ++++..+........+ .+....+.+...+. ....+++++++..|.+||..++.
T Consensus 251 ~~~~TaG~~g~-----~~~~d~es~~~~~~~~--~~~~~e~~~~~~~~--------~~~~~l~vtaeQnl~l~d~~~l~- 314 (775)
T KOG0319|consen 251 EYIITAGGSGV-----VQYWDSESGKCVYKQR--QSDSEEIDHLLAIE--------SMSQLLLVTAEQNLFLYDEDELT- 314 (775)
T ss_pred eEEEEecCCce-----EEEEecccchhhhhhc--cCCchhhhcceecc--------ccCceEEEEccceEEEEEccccE-
Confidence 45556666633 4444333222111111 11122233333332 23567889999999999877631
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEE-eeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCC
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKL-ITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVK 243 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~f-s~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~ 243 (826)
..-.+-+-+..|..++| .|..++++.+. .+.+|+|+....... ...+|+..|.+ ....|
T Consensus 315 ----------------i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g 377 (775)
T KOG0319|consen 315 ----------------IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSG 377 (775)
T ss_pred ----------------EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccC
Confidence 11123455667888887 57889999998 889999965543333 44889999999 45677
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccc
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~ 322 (826)
-+|+||+.|.+|++|.+....-.. +. .....+|...|.+|+++..+ ..|+++|.|+++++|++.......
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~---~~---~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~--- 448 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKS---LC---VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA--- 448 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchh---hh---hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc---
Confidence 899999999999999872222100 11 23346899999999997765 689999999999999998632210
Q ss_pred eEEEeecCCCCeEEEE-EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 323 FLSFTGSKKGNSHIIH-SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~-~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
.+..+. +.....|...|+|++++|+..++|+||.|.+.+||++.+..++.++ .+|...|+++.|++
T Consensus 449 ----------~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL---sGH~RGvw~V~Fs~ 515 (775)
T KOG0319|consen 449 ----------FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL---SGHTRGVWCVSFSK 515 (775)
T ss_pred ----------ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe---eCCccceEEEEecc
Confidence 111000 0122346778999999999999999999999999999988877544 59999999999999
Q ss_pred cccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCC
Q 003360 402 CSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPK 481 (826)
Q Consensus 402 ~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (826)
. +++++++|.|++|+||.+.+..|++++.+|.. .++...++. .+
T Consensus 516 ~------dq~laT~SgD~TvKIW~is~fSClkT~eGH~~---aVlra~F~~---------------------------~~ 559 (775)
T KOG0319|consen 516 N------DQLLATCSGDKTVKIWSISTFSCLKTFEGHTS---AVLRASFIR---------------------------NG 559 (775)
T ss_pred c------cceeEeccCCceEEEEEeccceeeeeecCccc---eeEeeeeee---------------------------CC
Confidence 5 89999999999999999999999999988864 445555554 12
Q ss_pred CCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEe
Q 003360 482 QWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIR 545 (826)
Q Consensus 482 ~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~ 545 (826)
.++|.+|+++-++||++. ...|+....-+ ..=.|+... ++....++..-+||.|..|
T Consensus 560 ~qliS~~adGliKlWnik-----t~eC~~tlD~H-~DrvWaL~~-~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 560 KQLISAGADGLIKLWNIK-----TNECEMTLDAH-NDRVWALSV-SPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred cEEEeccCCCcEEEEecc-----chhhhhhhhhc-cceeEEEee-cCccceeEecCCCeEEEEe
Confidence 367788889999999998 44454443222 233454321 2444455566667776655
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.2e-25 Score=221.08 Aligned_cols=236 Identities=13% Similarity=0.191 Sum_probs=189.7
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-c
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-P 224 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~ 224 (826)
.++-...+..+++|++..-. .. .......+.+|+..|+.+..++++.+.++++ |+++++|+.... .
T Consensus 30 ~l~sasrDk~ii~W~L~~dd-----~~-------~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~ 97 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWKLTSDD-----IK-------YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES 97 (315)
T ss_pred eEEEcccceEEEEEEeccCc-----cc-------cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcE
Confidence 34455566778888876621 00 1112345789999999999999999999999 999999976653 4
Q ss_pred eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEE
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVS 300 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Las 300 (826)
...| .+|+..|.+ |+++.+.|+||+.|.+|++||.-+... +++.. ..+...|+|+.|+|. ..++++
T Consensus 98 t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck---~t~~~------~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 98 TRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK---YTIHE------DSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred EEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeecccEE---EEEec------CCCcCcEEEEEEcCCCCCcEEEE
Confidence 4444 899999999 999999999999999999999966653 33321 123679999999998 689999
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
++.|++|++||+++-+.. ..+..|.+.|+.+++||||.++++|+.||.+.+||++.++.
T Consensus 168 ~s~DktvKvWnl~~~~l~---------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLR---------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN 226 (315)
T ss_pred ccCCceEEEEccCCcchh---------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce
Confidence 999999999999844331 23445788899999999999999999999999999999999
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
++++ ++...|.+++|+| ..+.++...+..|+|||+.++.++..+.
T Consensus 227 lysl----~a~~~v~sl~fsp-------nrywL~~at~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 227 LYSL----EAFDIVNSLCFSP-------NRYWLCAATATSIKIWDLESKAVVEELK 271 (315)
T ss_pred eEec----cCCCeEeeEEecC-------CceeEeeccCCceEEEeccchhhhhhcc
Confidence 9766 5788999999999 5666666667779999999999887764
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.1e-25 Score=221.24 Aligned_cols=288 Identities=13% Similarity=0.116 Sum_probs=211.5
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEE-Eec-CCcEEEeccC-----CCceeecccccCCccee--eCCCCCEEEEEECCCc
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFIL-SSA-DEDYSLLAKS-----VPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGA 254 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~-----~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGt 254 (826)
..-.+.+|...|+.++..+.++.++ +++ |.++.+|+.. .+.......+|...|.. .++++++.++|+.||+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 3456789999999999998865554 466 9999999432 22222223779999988 8999999999999999
Q ss_pred EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 255 INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 255 VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
+|+||+.+.+. ...|.+|...|.+++|+|+.+.+++|+.|.++++|+......
T Consensus 87 lrlWDl~~g~~----------t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck----------------- 139 (315)
T KOG0279|consen 87 LRLWDLATGES----------TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK----------------- 139 (315)
T ss_pred EEEEEecCCcE----------EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-----------------
Confidence 99999944331 223568999999999999999999999999999999873311
Q ss_pred EEEEEEEEeeccCCeEEEEEccC--CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 335 HIIHSVKVMKINGSIISLNMNRN--SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~--g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
.. +....+...|+|+.|+|+ ...+++++.|++|++||+++.++...+ .+|+..++.++++| ||..+
T Consensus 140 ~t---~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~---~gh~~~v~t~~vSp------DGslc 207 (315)
T KOG0279|consen 140 YT---IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF---IGHSGYVNTVTVSP------DGSLC 207 (315)
T ss_pred EE---EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc---ccccccEEEEEECC------CCCEE
Confidence 11 111112567999999998 678999999999999999998877443 48999999999999 79999
Q ss_pred EEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCc
Q 003360 413 VIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKA 492 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~ 492 (826)
++|+.||.+.+||++.++.+.++.. ...+.++.+ .|....+.+..+..
T Consensus 208 asGgkdg~~~LwdL~~~k~lysl~a----~~~v~sl~f----------------------------spnrywL~~at~~s 255 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGKNLYSLEA----FDIVNSLCF----------------------------SPNRYWLCAATATS 255 (315)
T ss_pred ecCCCCceEEEEEccCCceeEeccC----CCeEeeEEe----------------------------cCCceeEeeccCCc
Confidence 9999999999999999999877521 122233333 33444566667788
Q ss_pred EEEEeccccccccceeeeeeecCCC-------CceeeEeeeeCCceEEEEEEeeceEEEecc
Q 003360 493 ACAYSLSHAVQGVKKVLYKKKFHSS-------SCCWASTFYSGSDVGLMLLFTSGKFEIRSL 547 (826)
Q Consensus 493 irv~sl~~~~~g~~k~~~k~~~~~~-------~c~~~~~~~~~~~~~lv~~~~~G~I~i~sl 547 (826)
|+||++.. +.++...+.... .-.+.+..-+..|.-|.+.+.+|-|+++-+
T Consensus 256 IkIwdl~~-----~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 256 IKIWDLES-----KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred eEEEeccc-----hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 99999973 223222211100 001111112267888888999999988753
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.1e-25 Score=246.33 Aligned_cols=341 Identities=13% Similarity=0.178 Sum_probs=244.5
Q ss_pred cceEEEecCCC-----CCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCce
Q 003360 15 QVTSACWACPI-----GSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASR 89 (826)
Q Consensus 15 ~i~slcW~~p~-----g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ 89 (826)
.+.++.... + |.++.|++.+|.+++||..++.-......+ ..+. +..+ ........
T Consensus 235 ~~E~vv~l~-~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~------------~~~e---~~~~---~~~~~~~~ 295 (775)
T KOG0319|consen 235 SLESVVRLR-EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQS------------DSEE---IDHL---LAIESMSQ 295 (775)
T ss_pred heeeEEEec-hhcCCcceEEEEecCCceEEEEecccchhhhhhccC------------Cchh---hhcc---eeccccCc
Confidence 455666543 5 679999999999999999987211110000 0000 1111 11122334
Q ss_pred EEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHH
Q 003360 90 LYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYL 169 (826)
Q Consensus 90 lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~ 169 (826)
+++...+. +++.++..+. +..+--.-..+.+.||.++. +....++|.++++.|.+|+....
T Consensus 296 ~l~vtaeQ-------nl~l~d~~~l-~i~k~ivG~ndEI~Dm~~lG-------~e~~~laVATNs~~lr~y~~~~~---- 356 (775)
T KOG0319|consen 296 LLLVTAEQ-------NLFLYDEDEL-TIVKQIVGYNDEILDMKFLG-------PEESHLAVATNSPELRLYTLPTS---- 356 (775)
T ss_pred eEEEEccc-------eEEEEEcccc-EEehhhcCCchhheeeeecC-------CccceEEEEeCCCceEEEecCCC----
Confidence 44433321 1333333321 11112223466788888773 45678999999999999976652
Q ss_pred hhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC--CCc--eeecccccCCccee--eCC-
Q 003360 170 LQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS--VPP--LLDFETKLKDGSQS--HSK- 241 (826)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~--~~~--~~~~~~~h~g~V~~--~s~- 241 (826)
+-..+++|...|..+....+|.++++++ |..+++|+.. ... ......+|++.|.+ ++.
T Consensus 357 --------------~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~ 422 (775)
T KOG0319|consen 357 --------------YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL 422 (775)
T ss_pred --------------ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc
Confidence 2225799999999999888888999999 9999999542 211 12224789999988 443
Q ss_pred CCCEEEEEECCCcEEEEeCCC--Ccee-eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc
Q 003360 242 VKNLFITGHSDGAINFWDVSC--PLFL-LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~--~~~~-~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
...++++++.|+++++|++.. +... .++..+ .....|+..|+||+++|+..++|+||.|.+.+||++.....
T Consensus 423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~----~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l- 497 (775)
T KOG0319|consen 423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCR----YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRL- 497 (775)
T ss_pred CccEEEEecCCceEEEecCCCcccccccceehhh----HHHHhhcccccceEecCCCceEEecccccceeeecccCceE-
Confidence 446999999999999999933 2211 111111 12246889999999999999999999999999999982211
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEE
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 398 (826)
. ..+..|...|.|+.|++..+.+|++|.|++|+||.+.+..|+.++ .+|...|....
T Consensus 498 ---------------~-----~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~---eGH~~aVlra~ 554 (775)
T KOG0319|consen 498 ---------------L-----GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF---EGHTSAVLRAS 554 (775)
T ss_pred ---------------E-----EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee---cCccceeEeee
Confidence 1 455667888999999999999999999999999999999999665 49999999999
Q ss_pred EeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 399 FETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
|.. ++..|++++.||-|++|+..++.|+.++-.|...
T Consensus 555 F~~------~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 555 FIR------NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR 591 (775)
T ss_pred eee------CCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence 998 5999999999999999999999999998666543
No 16
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=3.8e-24 Score=234.23 Aligned_cols=289 Identities=10% Similarity=0.182 Sum_probs=217.6
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccC-CCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKS-VPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~-~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
....+.+|...|..++++.+...+++|+.+.+++|+.. ...+.++. .+.+.+ |-|.++++++|...|.+.++|+
T Consensus 365 ~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 365 SNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred ceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEe
Confidence 34667899999999999999999999999999999776 34555552 234555 9999999999999999999999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCe---EEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS---HII 337 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~---~~~ 337 (826)
....+ ...+..|.++|+.|+.+||+..+++|+.|.+|++||+.-- .. ..+++ ..+
T Consensus 442 aS~~l----------~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~--------~~----~~gt~~k~lsl 499 (888)
T KOG0306|consen 442 ASASL----------VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV--------VS----VPGTQKKVLSL 499 (888)
T ss_pred ehhhh----------hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE--------ec----cCcccceeeee
Confidence 43332 2234689999999999999999999999999999999721 11 12222 333
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
+.-+.......|.|+.+||||++||+|--|.+|+||-+.+.+...+. .+|.-||.|+..+| |+..+++||.
T Consensus 500 ~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL---YGHkLPV~smDIS~------DSklivTgSA 570 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL---YGHKLPVLSMDISP------DSKLIVTGSA 570 (888)
T ss_pred ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee---cccccceeEEeccC------CcCeEEeccC
Confidence 33455666888999999999999999999999999999888766444 39999999999999 7999999999
Q ss_pred CCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEE
Q 003360 418 DSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAY 496 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~ 496 (826)
|.+|++|-+.-|.|-.++-.|. ..+.+++++. +..+...|+ +..++-|
T Consensus 571 DKnVKiWGLdFGDCHKS~fAHd---DSvm~V~F~P----------------------------~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 571 DKNVKIWGLDFGDCHKSFFAHD---DSVMSVQFLP----------------------------KTHLFFTCGKDGKVKQW 619 (888)
T ss_pred CCceEEeccccchhhhhhhccc---CceeEEEEcc----------------------------cceeEEEecCcceEEee
Confidence 9999999999999998874443 3455666653 334555555 4579999
Q ss_pred eccc-----cccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCC
Q 003360 497 SLSH-----AVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPE 549 (826)
Q Consensus 497 sl~~-----~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~ 549 (826)
+-.. .+.|++..++.... .++|.-++....|-.|++|..-+
T Consensus 620 Dg~kFe~iq~L~~H~~ev~cLav------------~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 620 DGEKFEEIQKLDGHHSEVWCLAV------------SPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred chhhhhhheeeccchheeeeeEE------------cCCCCeEEeccCCceeEeeeccC
Confidence 7552 12233333332211 14455556666677788777666
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=4.4e-25 Score=213.55 Aligned_cols=243 Identities=15% Similarity=0.171 Sum_probs=192.0
Q ss_pred eccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecc
Q 003360 151 LGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFE 229 (826)
Q Consensus 151 ~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~ 229 (826)
....-.+.+||..+- . ++ +..++..|...|+.+.|..+|+.+.+|+ ||++++|+.+.+... ..
T Consensus 57 aa~~qhvRlyD~~S~----------n----p~-Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q-R~ 120 (311)
T KOG0315|consen 57 AAGNQHVRLYDLNSN----------N----PN-PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ-RN 120 (311)
T ss_pred hccCCeeEEEEccCC----------C----CC-ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc-hh
Confidence 334457788888771 0 11 3456789999999999999999999999 999999988763322 23
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMV 307 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V 307 (826)
..|...|.+ .+|+..-|++|.++|.|++||+..... ...+-. ....+|+++...|++.+|+.+...|..
T Consensus 121 ~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c--~~~liP-------e~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 121 YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC--THELIP-------EDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc--ccccCC-------CCCcceeeEEEcCCCcEEEEecCCccE
Confidence 567888988 899999999999999999999944321 111221 122689999999999999999999999
Q ss_pred EEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 308 RIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
.+|++-...... ...+. .++..|++.++...+||++++||+++.|.+|+||++.+. ...... .
T Consensus 192 yvW~l~~~~~~s-----------~l~P~----~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~-l 254 (311)
T KOG0315|consen 192 YVWRLLNHQTAS-----------ELEPV----HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELV-L 254 (311)
T ss_pred EEEEccCCCccc-----------cceEh----hheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEE-e
Confidence 999997543211 00011 456677889999999999999999999999999999887 222222 3
Q ss_pred cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 388 SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 388 ~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
.+|...++..+|+. |+.||++|++|+.+++||+.+|+.+..+.+|.+.
T Consensus 255 ~gh~rWvWdc~FS~------dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 255 TGHQRWVWDCAFSA------DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred ecCCceEEeeeecc------CccEEEecCCCCceeecccccCceeeecCCcccc
Confidence 57889999999998 7999999999999999999999999998777764
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=6.2e-25 Score=229.49 Aligned_cols=298 Identities=17% Similarity=0.192 Sum_probs=218.0
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCcccccccccccccccccc--cc--CCCCCCcCCeEEEEEeeeCCCC
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICK--LN--LGYKLDKIPISSLKWVYADGKA 87 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~pI~~l~W~~~~~~~ 87 (826)
++.+|++.||.+-.-..+|+|..|-..++|++..... ....+ ...| ++ .........|+.++|.. +
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~----~~~~q--~~lrh~~~~~~~s~~~nkdVT~L~Wn~----~ 246 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSN----IGSTQ--LVLRHCIREGGKSVPSNKDVTSLDWNN----D 246 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhcc----ccchh--hhhhhhhhhhcccCCccCCcceEEecC----C
Confidence 6889999999643444999999999999999985200 00000 0111 11 12222334567777754 3
Q ss_pred ceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 88 SRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 88 g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
|.++++ +..+|++.+|+...-
T Consensus 247 G~~Lat---------------------------------------------------------G~~~G~~riw~~~G~-- 267 (524)
T KOG0273|consen 247 GTLLAT---------------------------------------------------------GSEDGEARIWNKDGN-- 267 (524)
T ss_pred CCeEEE---------------------------------------------------------eecCcEEEEEecCch--
Confidence 444443 444567777775441
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCC
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN 244 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~ 244 (826)
...++..|..+|..++|+-.|.++++++ |+++.+|+...+.......-|..+... |.. ..
T Consensus 268 ----------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~ 330 (524)
T KOG0273|consen 268 ----------------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-ND 330 (524)
T ss_pred ----------------hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-Cc
Confidence 1234578999999999999999999999 999999987543332221334544333 433 35
Q ss_pred EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
-+++.+.||.|+++.+..... ...+.+|..+|.+|.|+|.+.+|++++.|++++||......+.
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P----------~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~------ 394 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRP----------VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV------ 394 (524)
T ss_pred eEeecCCCceEEEEEecCCCc----------ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch------
Confidence 689999999999999955442 3345679999999999999999999999999999998754332
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccC---------CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCee
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN---------SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIV 395 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~---------g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~ 395 (826)
..+..|...|..+.|+|+ +..+++++.|++|++||+..+.+++.+. .|..+|.
T Consensus 395 ---------------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~---kH~~pVy 456 (524)
T KOG0273|consen 395 ---------------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM---KHQEPVY 456 (524)
T ss_pred ---------------hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec---cCCCceE
Confidence 122234555777777765 3579999999999999999999997764 8999999
Q ss_pred EEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 396 SLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+++|+| ++.++++|+.||.|.+|+..+++.++++
T Consensus 457 svafS~------~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 457 SVAFSP------NGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred EEEecC------CCcEEEecCCCCeeEeccccchheeEee
Confidence 999999 6999999999999999999999998876
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=4.9e-26 Score=252.10 Aligned_cols=252 Identities=12% Similarity=0.154 Sum_probs=200.2
Q ss_pred CCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC------------Cce-------------------
Q 003360 178 PSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV------------PPL------------------- 225 (826)
Q Consensus 178 ~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~------------~~~------------------- 225 (826)
..++.....+...-...|+|+.|+.++..+|.|. |..|++|.... ...
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence 3344455555555667899999999999888888 99999994220 000
Q ss_pred eecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC
Q 003360 226 LDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 303 (826)
Q Consensus 226 ~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~ 303 (826)
.....+|.|.|.. |+|+.++|++++.|++||+|.+...... +. ..+|..+|+.+.|+|.|-+||+|+.
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~----V~------y~GH~~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL----VI------YKGHLAPVWDVQFAPRGYYFATASH 513 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeE----EE------ecCCCcceeeEEecCCceEEEecCC
Confidence 0013579999988 9999999999999999999999444421 22 2478899999999999999999999
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEe
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
|++.++|....... . -.+..|.+.|.|+.|+|+..++|+||.|.+||+||..+|..+..
T Consensus 514 D~tArLWs~d~~~P-----------------l----RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi 572 (707)
T KOG0263|consen 514 DQTARLWSTDHNKP-----------------L----RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI 572 (707)
T ss_pred CceeeeeecccCCc-----------------h----hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE
Confidence 99999999874321 1 22345678899999999999999999999999999999998844
Q ss_pred eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccc
Q 003360 384 KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANL 463 (826)
Q Consensus 384 ~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~ 463 (826)
+ .+|.++|++++|+|+ |.+|++|+.||.|++||+.+|+.+.++..| .+.+.++.+.
T Consensus 573 F---~GH~~~V~al~~Sp~------Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H---t~ti~SlsFS------------ 628 (707)
T KOG0263|consen 573 F---TGHKGPVTALAFSPC------GRYLASGDEDGLIKIWDLANGSLVKQLKGH---TGTIYSLSFS------------ 628 (707)
T ss_pred e---cCCCCceEEEEEcCC------CceEeecccCCcEEEEEcCCCcchhhhhcc---cCceeEEEEe------------
Confidence 4 589999999999995 999999999999999999999999998777 3444555442
Q ss_pred cccccccCCCCCCCCCCCCC-EEEEeecCcEEEEeccc
Q 003360 464 SNVAGMNKGSPKENAVPKQW-FVLLCSEKAACAYSLSH 500 (826)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~-~vv~~se~~irv~sl~~ 500 (826)
.++. +++.+.|++|++|++..
T Consensus 629 ----------------~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 629 ----------------RDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ----------------cCCCEEEecCCCCeEEEEEchh
Confidence 2333 55555677999999874
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=1.1e-23 Score=222.85 Aligned_cols=334 Identities=19% Similarity=0.232 Sum_probs=247.1
Q ss_pred ccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCC
Q 003360 8 SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKA 87 (826)
Q Consensus 8 ~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~ 87 (826)
+...|.|=|.|+.+ +|||++||+.+.||.|.++|=.++.... .+. ....|+.-|..+.|.+ +.
T Consensus 185 s~r~HskFV~~VRy-sPDG~~Fat~gsDgki~iyDGktge~vg------------~l~-~~~aHkGsIfalsWsP---Ds 247 (603)
T KOG0318|consen 185 SFREHSKFVNCVRY-SPDGSRFATAGSDGKIYIYDGKTGEKVG------------ELE-DSDAHKGSIFALSWSP---DS 247 (603)
T ss_pred cccccccceeeEEE-CCCCCeEEEecCCccEEEEcCCCccEEE------------Eec-CCCCccccEEEEEECC---CC
Confidence 44556778889998 7899999999999999999988872111 111 1445777899999975 34
Q ss_pred ceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 88 SRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 88 g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
.+++.++++ ....+|.....+..++ +++...+.|+.+-+- -....++.++.+|.|.+++...
T Consensus 248 ~~~~T~SaD-----kt~KIWdVs~~slv~t----~~~~~~v~dqqvG~l------Wqkd~lItVSl~G~in~ln~~d--- 309 (603)
T KOG0318|consen 248 TQFLTVSAD-----KTIKIWDVSTNSLVST----WPMGSTVEDQQVGCL------WQKDHLITVSLSGTINYLNPSD--- 309 (603)
T ss_pred ceEEEecCC-----ceEEEEEeeccceEEE----eecCCchhceEEEEE------EeCCeEEEEEcCcEEEEecccC---
Confidence 566666655 3466776666544333 334444555443221 1146789999999999988776
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-----------------------C
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-----------------------P 223 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-----------------------~ 223 (826)
+. .+..+.+|.-.||++..++++.++++|+ ||.|.-|+... .
T Consensus 310 -------------~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 310 -------------PS-VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred -------------CC-hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 22 4456789999999999999999999999 99999994110 0
Q ss_pred ceeec----------------------c---cc-----cCC-------------------cc---------ee--eCCCC
Q 003360 224 PLLDF----------------------E---TK-----LKD-------------------GS---------QS--HSKVK 243 (826)
Q Consensus 224 ~~~~~----------------------~---~~-----h~g-------------------~V---------~~--~s~~~ 243 (826)
.+.+. + .| ... .+ .+ ++|++
T Consensus 376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG 455 (603)
T ss_pred cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC
Confidence 00000 0 00 000 00 11 78999
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccce
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~ 323 (826)
..++.|++||.|+||.+++..+.. +.....|.++|++|+|+|++.+||+|...+.|.+||+......
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~e--------e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~----- 522 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKE--------EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK----- 522 (603)
T ss_pred CEEEEecccceEEEEEecCCcccc--------eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee-----
Confidence 999999999999999997766311 1123468899999999999999999999999999999854331
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecc
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~ 403 (826)
. .....|.+.|.||+|+|+..+||+|+-|-.|.||++..+... ..+...|...|+.+.|..
T Consensus 523 ------------~---~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~iknAH~~gVn~v~wld-- 583 (603)
T KOG0318|consen 523 ------------T---NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH--IIIKNAHLGGVNSVAWLD-- 583 (603)
T ss_pred ------------c---ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh--eEeccccccCceeEEEec--
Confidence 1 445668899999999999999999999999999999988755 334467888899999985
Q ss_pred cCCCCCcEEEEEECCCcEEEEECC
Q 003360 404 LQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 404 ~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
...+++.+.|..|++|+..
T Consensus 584 -----e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 584 -----ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred -----CceEEeccCcceeEEeccc
Confidence 7889999999999999864
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=7.2e-26 Score=232.64 Aligned_cols=243 Identities=16% Similarity=0.254 Sum_probs=200.4
Q ss_pred ceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCe
Q 003360 127 PCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF 206 (826)
Q Consensus 127 ~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~ 206 (826)
++.++.+.|.. ..+++++.+|++.+|+...+. +...+..|+++|+++.+++++.+
T Consensus 98 ~V~~v~WtPeG--------RRLltgs~SGEFtLWNg~~fn-----------------FEtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 98 PVNVVRWTPEG--------RRLLTGSQSGEFTLWNGTSFN-----------------FETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred ceeeEEEcCCC--------ceeEeecccccEEEecCceee-----------------HHHHhhhhcccceeEEEccCCCE
Confidence 44555555443 678999999999999997631 22335789999999999999999
Q ss_pred EEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCC
Q 003360 207 ILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG 283 (826)
Q Consensus 207 l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~ 283 (826)
+++|. ++.|+.|......+..+...|...|.+ |+|+...++|++.||+|+|||...... +..+.+|+
T Consensus 153 miSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke----------e~vL~GHg 222 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE----------ERVLRGHG 222 (464)
T ss_pred EEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch----------hheeccCC
Confidence 99999 999999976665566664556688988 999999999999999999999943331 22346899
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
..|.+++|+|...++++|+.|..|++||.+++.+. .....|+..|+.+.|++++.+|++
T Consensus 223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl---------------------~tlh~HKntVl~~~f~~n~N~Llt 281 (464)
T KOG0284|consen 223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL---------------------ATLHGHKNTVLAVKFNPNGNWLLT 281 (464)
T ss_pred CCcceeccCCccceeEEccCCceeEeecCCCcchh---------------------hhhhhccceEEEEEEcCCCCeeEE
Confidence 99999999999999999999999999999977652 334456778999999999999999
Q ss_pred EecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 364 GSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 364 Gs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
++.|..++|+|++..+-+++. .+|..-|+++.|+|. ...++.+|+.||.|..|....-+.+.
T Consensus 282 ~skD~~~kv~DiR~mkEl~~~---r~Hkkdv~~~~WhP~-----~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMKELFTY---RGHKKDVTSLTWHPL-----NESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred ccCCceEEEEehhHhHHHHHh---hcchhhheeeccccc-----cccceeeccCCCceEEEecccccccc
Confidence 999999999999976666444 479999999999997 57889999999999999988444443
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=5.5e-24 Score=210.51 Aligned_cols=241 Identities=17% Similarity=0.204 Sum_probs=197.2
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
...++..+.+|.|++||..+ .++.+. +|....-|..++|+|.+..++.|+ |....+|+....
T Consensus 67 sr~ivSaSqDGklIvWDs~T----------------tnK~ha-ipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 67 SRRIVSASQDGKLIVWDSFT----------------TNKVHA-IPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred cCeEEeeccCCeEEEEEccc----------------ccceeE-EecCceeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence 35677888999999999877 233322 566667899999999999999999 999999965432
Q ss_pred ------ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-C
Q 003360 224 ------PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-T 294 (826)
Q Consensus 224 ------~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~ 294 (826)
.......+|++.+.| |-. ...|+||+.|.+.-+||+..... ...|.+|...|.+|+++| +
T Consensus 130 d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~----------~~~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQ----------TQVFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred cccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceE----------EEEecCCcccEEEEecCCCC
Confidence 222224789999999 544 66799999999999999944442 234568999999999999 8
Q ss_pred CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 003360 295 SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD 374 (826)
Q Consensus 295 ~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD 374 (826)
++.|++|+.|++.+|||++.+.+ . -.+..|.+.|.+++|.|+|.-+++|++|+++|+||
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c-----------------~----qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQC-----------------V----QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred CCeEEecccccceeeeeccCcce-----------------e----EeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence 99999999999999999995433 1 45667888999999999999999999999999999
Q ss_pred cCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 375 TEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
+|...-+.... ......+|++++|+. +|++|++|..|.++.+||.-.++.+..+.+|.+.
T Consensus 258 lRaD~~~a~ys-~~~~~~gitSv~FS~------SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR 317 (343)
T KOG0286|consen 258 LRADQELAVYS-HDSIICGITSVAFSK------SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR 317 (343)
T ss_pred ecCCcEEeeec-cCcccCCceeEEEcc------cccEEEeeecCCceeEeeccccceEEEeeccCCe
Confidence 99876664333 235677999999999 4999999999999999999999999998888764
No 23
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.8e-23 Score=231.98 Aligned_cols=293 Identities=13% Similarity=0.161 Sum_probs=224.5
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceE
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 90 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~l 90 (826)
.+...+..+++| |.--+|++++-.|.|.+||-+-+... ....+|..||.-+.+.. ..-+
T Consensus 7 skSsRvKglsFH-P~rPwILtslHsG~IQlWDYRM~tli----------------~rFdeHdGpVRgv~FH~----~qpl 65 (1202)
T KOG0292|consen 7 SKSSRVKGLSFH-PKRPWILTSLHSGVIQLWDYRMGTLI----------------DRFDEHDGPVRGVDFHP----TQPL 65 (1202)
T ss_pred cccccccceecC-CCCCEEEEeecCceeeeehhhhhhHH----------------hhhhccCCccceeeecC----CCCe
Confidence 346678899996 79999999999999999998875111 12345677888888766 4568
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHh
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~ 170 (826)
||+||+|- .+.||.+....
T Consensus 66 FVSGGDDy----kIkVWnYk~rr--------------------------------------------------------- 84 (1202)
T KOG0292|consen 66 FVSGGDDY----KIKVWNYKTRR--------------------------------------------------------- 84 (1202)
T ss_pred EEecCCcc----EEEEEecccce---------------------------------------------------------
Confidence 99999843 34444332221
Q ss_pred hccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEE
Q 003360 171 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI 247 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~ 247 (826)
..+++-+|...|..+.|++.-+++++++ |.+|++|+.+.........+|...|.| |+|...+++
T Consensus 85 -------------clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIV 151 (1202)
T KOG0292|consen 85 -------------CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIV 151 (1202)
T ss_pred -------------ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEE
Confidence 2345678999999999999999999999 899999998877777667999999999 999999999
Q ss_pred EEECCCcEEEEeCCCCcee---ee------------eeccccc----ccccccCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003360 248 TGHSDGAINFWDVSCPLFL---LI------------LSLKQQS----EKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVR 308 (826)
Q Consensus 248 Tgs~DGtVriWD~s~~~~~---~i------------~~l~~~~----~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~ 308 (826)
+||-|.||||||+++-... +- ..|-.+. ...+++|+..|+.++|+|.-.+++||+.|..|+
T Consensus 152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 231 (1202)
T ss_pred EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceee
Confidence 9999999999998542210 00 0000000 123578999999999999999999999999999
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEE-EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV-KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~-~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
+|++..... |.+ ....|...|+++-|+|...++++.++|++|+|||+...+.+.++.
T Consensus 232 lWrmnetKa--------------------WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr-- 289 (1202)
T KOG0292|consen 232 LWRMNETKA--------------------WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR-- 289 (1202)
T ss_pred EEEeccccc--------------------eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee--
Confidence 999973311 111 123567889999999999999999999999999999999987775
Q ss_pred cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 388 SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 388 ~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
......+.++-.| .--|++++.|+-+.||-+..
T Consensus 290 -rendRFW~laahP-------~lNLfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 290 -RENDRFWILAAHP-------ELNLFAAGHDSGMIVFKLER 322 (1202)
T ss_pred -ccCCeEEEEEecC-------CcceeeeecCCceEEEEEcc
Confidence 4456788888888 44466677777777777663
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=2.4e-25 Score=228.76 Aligned_cols=280 Identities=16% Similarity=0.252 Sum_probs=215.2
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
.-.|-.++|. |+|+.|+||++.|...+|+..+. . +..--..|..||..+.|.. ++..+|
T Consensus 96 kc~V~~v~Wt-PeGRRLltgs~SGEFtLWNg~~f-------n---------FEtilQaHDs~Vr~m~ws~----~g~wmi 154 (464)
T KOG0284|consen 96 KCPVNVVRWT-PEGRRLLTGSQSGEFTLWNGTSF-------N---------FETILQAHDSPVRTMKWSH----NGTWMI 154 (464)
T ss_pred ccceeeEEEc-CCCceeEeecccccEEEecCcee-------e---------HHHHhhhhcccceeEEEcc----CCCEEE
Confidence 3478899995 79999999999999999987543 0 0011224677999999986 455555
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
+|.. .|.|-.|+.+.-.
T Consensus 155 SgD~---------------------------------------------------------gG~iKyWqpnmnn------ 171 (464)
T KOG0284|consen 155 SGDK---------------------------------------------------------GGMIKYWQPNMNN------ 171 (464)
T ss_pred EcCC---------------------------------------------------------CceEEecccchhh------
Confidence 5543 2344455544310
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEE
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITG 249 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tg 249 (826)
....-..|...|++++|+|++..+++++ |++|++|+...+.......+|.-.|.+ |||...+|++|
T Consensus 172 -----------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasg 240 (464)
T KOG0284|consen 172 -----------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASG 240 (464)
T ss_pred -----------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEc
Confidence 1111133448999999999999999999 999999976654333333778888888 99999999999
Q ss_pred ECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEee
Q 003360 250 HSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 250 s~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
+.|..|++||. ++.++ ++ +..|...|..+.|+|++.+|+++|.|..+++||++.-+..
T Consensus 241 skDnlVKlWDprSg~cl---~t--------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl---------- 299 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCL---AT--------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL---------- 299 (464)
T ss_pred cCCceeEeecCCCcchh---hh--------hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH----------
Confidence 99999999999 66552 22 3468899999999999999999999999999999832110
Q ss_pred cCCCCeEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCC
Q 003360 329 SKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF 407 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~ 407 (826)
..+..|...|+++.|+|- ..++++|+.||.|..|.+.....+ ..+...|...|++++|.|.
T Consensus 300 -----------~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~--~~i~~AHd~~iwsl~~hPl----- 361 (464)
T KOG0284|consen 300 -----------FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL--GEIPPAHDGEIWSLAYHPL----- 361 (464)
T ss_pred -----------HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc--cCCCcccccceeeeecccc-----
Confidence 233456788999999994 457899999999999999744444 3445689999999999997
Q ss_pred CCcEEEEEECCCcEEEEECC
Q 003360 408 EKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 408 d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|.+|++|+.|.++++|...
T Consensus 362 -Ghil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 362 -GHILATGSNDRTVRFWTRN 380 (464)
T ss_pred -ceeEeecCCCcceeeeccC
Confidence 9999999999999999864
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=239.48 Aligned_cols=213 Identities=18% Similarity=0.248 Sum_probs=176.9
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc---eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CC
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP---LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SC 262 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~---~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~ 262 (826)
.|...|+++.|+++|+.+++++ ++.+++|...... .... .+|..+|.+ |+|+++++++|+.|++|||||+ ..
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 3478999999999999999987 9999999763322 2222 679999988 9999999999999999999999 33
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.. .+++ +.+|...|++++|+|+++++++|+.|++|+|||++++.+ . ..+
T Consensus 236 ~~--~~~~--------l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~-----------------~----~~l 284 (456)
T KOG0266|consen 236 GR--NLKT--------LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC-----------------V----RKL 284 (456)
T ss_pred Ce--EEEE--------ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE-----------------E----Eee
Confidence 22 1222 358999999999999999999999999999999995433 1 445
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe--eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT--VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~--~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
..|.++|++++|++++.+|++++.||.|+|||+.++. ++....-..... ++++++|+| ++.++++++.|+.
T Consensus 285 ~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp------~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 285 KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSP------NGKYLLSASLDRT 357 (456)
T ss_pred eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECC------CCcEEEEecCCCe
Confidence 5678899999999999999999999999999999999 443333222223 799999999 6999999999999
Q ss_pred EEEEECCCCceEEeeeccCCC
Q 003360 421 VLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 421 V~iwd~~tg~~i~~~~~~~~~ 441 (826)
+++||+..+.++..+..|...
T Consensus 358 ~~~w~l~~~~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 358 LKLWDLRSGKSVGTYTGHSNL 378 (456)
T ss_pred EEEEEccCCcceeeecccCCc
Confidence 999999999999998777665
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=205.34 Aligned_cols=288 Identities=14% Similarity=0.161 Sum_probs=211.4
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEE
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLY 91 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ll 91 (826)
|...+-++|||+-.|..||+++.|..|++|+...+.. -..+-.+ ...++..|..++|.+ .|+++
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-----------~~ck~vl-d~~hkrsVRsvAwsp----~g~~L 76 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-----------WTCKTVL-DDGHKRSVRSVAWSP----HGRYL 76 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-----------EEEEEec-cccchheeeeeeecC----CCcEE
Confidence 4446999999753388999999999999998875310 1112112 225667899999976 46666
Q ss_pred EEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhh
Q 003360 92 IMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQ 171 (826)
Q Consensus 92 i~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~ 171 (826)
.++.-|. ...+|....
T Consensus 77 a~aSFD~---------------------------------------------------------t~~Iw~k~~------- 92 (312)
T KOG0645|consen 77 ASASFDA---------------------------------------------------------TVVIWKKED------- 92 (312)
T ss_pred EEeeccc---------------------------------------------------------eEEEeecCC-------
Confidence 6665433 111111111
Q ss_pred ccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC---ceeecccccCCccee--eCCCCCE
Q 003360 172 YQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP---PLLDFETKLKDGSQS--HSKVKNL 245 (826)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~---~~~~~~~~h~g~V~~--~s~~~~~ 245 (826)
+ ..+..-.|.+|+..|.|++|+++|.+||+++ |+.|=+|..... .......+|+..|-. |||...+
T Consensus 93 ---~-----efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 93 ---G-----EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred ---C-----ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 0 1112345789999999999999999999999 999999954421 222235789999877 9999999
Q ss_pred EEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 246 FITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 246 l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
|++++.|.+||+|+-. .....+..+| .+|...|++++|++.|..|++++.|++|+||.....
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl--------~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--------- 227 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTL--------DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--------- 227 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEe--------cCccceEEEEEecCCCceEEEecCCcceEeeeeccC---------
Confidence 9999999999999984 6655444444 478889999999999999999999999999997622
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC----eeEEeeecccCCCCCeeEEEEe
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP----TVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~----~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
....|..++..+.|. +| .+|+|+.|+.|+|+--... ..-........|...|.+++|.
T Consensus 228 ----------------~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~ 289 (312)
T KOG0645|consen 228 ----------------LSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN 289 (312)
T ss_pred ----------------cchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEc
Confidence 112346789999999 55 7999999999999976532 1111123345688899999999
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|. ..+.|++|+.||.|++|.+.
T Consensus 290 p~-----~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 290 PK-----VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CC-----CCCceeecCCCceEEEEEec
Confidence 93 37899999999999999864
No 27
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=4.7e-25 Score=219.68 Aligned_cols=289 Identities=17% Similarity=0.186 Sum_probs=215.9
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM 306 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~ 306 (826)
.+.+..+.| |+|||++|++|+.||.|.+||. +++. -..++++....+..++.+|.|++|+.|+..||+|+.||.
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKl---rKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKL---RKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchh---hhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 445566666 9999999999999999999999 5554 366899989999999999999999999999999999999
Q ss_pred EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 307 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 307 V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
|++|+++++.+. -++. .|...|+|+.||.|+..+++++.|.+|+|.-+.+|+++..+
T Consensus 287 IKvWri~tG~Cl---------------------RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf- 344 (508)
T KOG0275|consen 287 IKVWRIETGQCL---------------------RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF- 344 (508)
T ss_pred EEEEEEecchHH---------------------HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh-
Confidence 999999987663 1222 45677999999999999999999999999999999999544
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccc
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSN 465 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~ 465 (826)
.+|++.|+...|.+ ||.+++++++||+|++|+..+++|+.+|.... ....+.++..+..
T Consensus 345 --rGHsSyvn~a~ft~------dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PK------------ 403 (508)
T KOG0275|consen 345 --RGHSSYVNEATFTD------DGHHIISASSDGTVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPK------------ 403 (508)
T ss_pred --cCccccccceEEcC------CCCeEEEecCCccEEEecCcchhhhhhccCCC-CcccceeEEEcCC------------
Confidence 48999999999998 79999999999999999999999999973222 2334444444421
Q ss_pred cccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEe
Q 003360 466 VAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIR 545 (826)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~ 545 (826)
..+.++|+--.+.++|.++...+ .+.+..-+- ..-.+.....++++..+-|.-.+|.+-.+
T Consensus 404 --------------npeh~iVCNrsntv~imn~qGQv---VrsfsSGkR--EgGdFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 404 --------------NPEHFIVCNRSNTVYIMNMQGQV---VRSFSSGKR--EGGDFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred --------------CCceEEEEcCCCeEEEEeccceE---EeeeccCCc--cCCceEEEEecCCCcEEEEEccCcEEEEE
Confidence 11235544455688888886421 112221111 12223333334778888888888888777
Q ss_pred ccCCcccccc-----ccccceeecCCCCCCCcccceeccCCCcEEEEc
Q 003360 546 SLPELSLLKE-----TSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVN 588 (826)
Q Consensus 546 slP~L~~l~~-----~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~ 588 (826)
+.-+.++=.. -.+.++.++ |.-.-..+-+.||-+.+|.
T Consensus 465 ~~~sG~LE~tl~VhEkdvIGl~HH-----PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 465 SVLSGKLERTLPVHEKDVIGLTHH-----PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EeecCceeeeeecccccccccccC-----cccchhhhhcccchhhhcC
Confidence 7766554332 233366666 3445667788899988884
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=5e-23 Score=217.05 Aligned_cols=282 Identities=16% Similarity=0.224 Sum_probs=211.6
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 86 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~ 86 (826)
+++..|...|++++| +|++.+|++|..||.|.+||+.++.... . ...+..++..+.|+.
T Consensus 3 ~~~~~h~~~i~~~~~-~~~~~~l~~~~~~g~i~i~~~~~~~~~~------------~----~~~~~~~i~~~~~~~---- 61 (289)
T cd00200 3 RTLKGHTGGVTCVAF-SPDGKLLATGSGDGTIKVWDLETGELLR------------T----LKGHTGPVRDVAASA---- 61 (289)
T ss_pred hHhcccCCCEEEEEE-cCCCCEEEEeecCcEEEEEEeeCCCcEE------------E----EecCCcceeEEEECC----
Confidence 345567789999999 5799999999999999999988741000 0 001112233333322
Q ss_pred CceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHH
Q 003360 87 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 166 (826)
Q Consensus 87 ~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~ 166 (826)
+...+++++.+|.+.+||....
T Consensus 62 ---------------------------------------------------------~~~~l~~~~~~~~i~i~~~~~~- 83 (289)
T cd00200 62 ---------------------------------------------------------DGTYLASGSSDKTIRLWDLETG- 83 (289)
T ss_pred ---------------------------------------------------------CCCEEEEEcCCCeEEEEEcCcc-
Confidence 0123455666788888887651
Q ss_pred HHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-ceeecccccCCccee--eCCC
Q 003360 167 RYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-PLLDFETKLKDGSQS--HSKV 242 (826)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~~~~~~~~h~g~V~~--~s~~ 242 (826)
.....+..|...|+++.|++++..+++++ ++.+.+|+.... ....+ ..|.+.+.+ ++++
T Consensus 84 ----------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 146 (289)
T cd00200 84 ----------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPD 146 (289)
T ss_pred ----------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCc
Confidence 12233567888999999999999999988 999999976632 33333 468888888 8999
Q ss_pred CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccc
Q 003360 243 KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 243 ~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~ 322 (826)
+.++++++.||.|++||+..... +. .+..|...|+++.|+|++..+++++.||.|++||++....
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~--~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----- 211 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKC--VA--------TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC----- 211 (289)
T ss_pred CCEEEEEcCCCcEEEEEcccccc--ce--------eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce-----
Confidence 99999999999999999953331 11 1235667899999999999999999999999999984322
Q ss_pred eEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 323 FLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
+... .+...|.+++|++++.++++++.||.|++||+.++..+.... .|...|.++.|++
T Consensus 212 -----------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~ 271 (289)
T cd00200 212 -----------------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS---GHTNSVTSLAWSP 271 (289)
T ss_pred -----------------ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc---ccCCcEEEEEECC
Confidence 2222 456689999999998888888889999999999888775443 6778999999998
Q ss_pred cccCCCCCcEEEEEECCCcEEEEE
Q 003360 402 CSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 402 ~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
++.+|++++.|+.|++|+
T Consensus 272 ------~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 272 ------DGKRLASGSADGTIRIWD 289 (289)
T ss_pred ------CCCEEEEecCCCeEEecC
Confidence 489999999999999996
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=4e-23 Score=200.04 Aligned_cols=208 Identities=17% Similarity=0.274 Sum_probs=168.0
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccC--CC-ceeecccccCCccee--eCCCCCEEEEEECCCcEEEE
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKS--VP-PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFW 258 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~--~~-~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriW 258 (826)
...+++..++.|..+.+.|+++.|++++...||+|+.. .+ ++.++ .+|+..|.+ |..+|+++.||++||++|||
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIW 110 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIW 110 (311)
T ss_pred EEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEE
Confidence 34557778899999999999999999999999999543 33 55566 889999999 99999999999999999999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
|+.....+. . -.|..+|++|..+|+...|++|..+|.|++||+..+.+.+
T Consensus 111 dlR~~~~qR----~-------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~------------------- 160 (311)
T KOG0315|consen 111 DLRSLSCQR----N-------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH------------------- 160 (311)
T ss_pred eccCcccch----h-------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc-------------------
Confidence 995543111 1 1255899999999999999999999999999999665422
Q ss_pred EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE---EeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 339 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL---YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l---~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
........+|+++...|||..|+.+...|..++|++-+..-. ....-...|...+..+.++| |+.+|+++
T Consensus 161 -~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP------d~k~lat~ 233 (311)
T KOG0315|consen 161 -ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP------DVKYLATC 233 (311)
T ss_pred -ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC------CCcEEEee
Confidence 001111356999999999999999999999999999765322 11122346888999999999 79999999
Q ss_pred ECCCcEEEEECCCC
Q 003360 416 TKDSSVLVLDSDNG 429 (826)
Q Consensus 416 s~Dg~V~iwd~~tg 429 (826)
+.|.+++||+.++-
T Consensus 234 ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDF 247 (311)
T ss_pred cCCceEEEEecCCc
Confidence 99999999999864
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.6e-22 Score=215.82 Aligned_cols=278 Identities=12% Similarity=0.160 Sum_probs=206.0
Q ss_pred ccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCce
Q 003360 10 YHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASR 89 (826)
Q Consensus 10 ~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ 89 (826)
......|.|+-.| |.--.++++..+|.+.|||..+...-+..+.++ .||...++
T Consensus 10 ~~rSdRVKsVd~H-PtePw~la~LynG~V~IWnyetqtmVksfeV~~----------------~PvRa~kf--------- 63 (794)
T KOG0276|consen 10 QSRSDRVKSVDFH-PTEPWILAALYNGDVQIWNYETQTMVKSFEVSE----------------VPVRAAKF--------- 63 (794)
T ss_pred hccCCceeeeecC-CCCceEEEeeecCeeEEEecccceeeeeeeecc----------------cchhhhee---------
Confidence 3356689999985 799999999999999999988853333222111 12222111
Q ss_pred EEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHH
Q 003360 90 LYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYL 169 (826)
Q Consensus 90 lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~ 169 (826)
+ .+..-+++++.++++.+|+.++.+
T Consensus 64 --------------------------------------------i--------aRknWiv~GsDD~~IrVfnynt~e--- 88 (794)
T KOG0276|consen 64 --------------------------------------------I--------ARKNWIVTGSDDMQIRVFNYNTGE--- 88 (794)
T ss_pred --------------------------------------------e--------eccceEEEecCCceEEEEecccce---
Confidence 1 112445677777888898888742
Q ss_pred hhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec-ccccCCccee--eCC-CCC
Q 003360 170 LQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSK-VKN 244 (826)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~-~~~ 244 (826)
....+..|...|.|++.+|..+++++++ |-+|++|+....+.... ..+|+..|.+ |.| |.+
T Consensus 89 --------------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n 154 (794)
T KOG0276|consen 89 --------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN 154 (794)
T ss_pred --------------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc
Confidence 2334678999999999999999999999 88999997665554433 3789999988 666 667
Q ss_pred EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC--CEEEEEeCCCcEEEEEeCCCCCccccc
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS--RVLVSGDQSGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~--~~Lasgs~dg~V~iwd~~~~~~~~~~~ 322 (826)
.+++++-|+||+||.+..+. +.++ +++|...|+||.|-+.+ .+|++|+.|.+|+|||+.+..|.
T Consensus 155 tFaS~sLDrTVKVWslgs~~--~nfT--------l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV---- 220 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGSPH--PNFT--------LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV---- 220 (794)
T ss_pred ceeeeeccccEEEEEcCCCC--Ccee--------eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH----
Confidence 99999999999999994333 1233 35899999999998754 79999999999999999866552
Q ss_pred eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeec
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
.....|...|.++.|+|.-.++++|++||+||||+..+-+...+.. -....|++++....
T Consensus 221 -----------------~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn---~gleRvW~I~~~k~ 280 (794)
T KOG0276|consen 221 -----------------QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN---YGLERVWCIAAHKG 280 (794)
T ss_pred -----------------HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh---cCCceEEEEeecCC
Confidence 1223466779999999999999999999999999988776653332 23457888887773
Q ss_pred ccCCCCCcEEEEEECCCcEE
Q 003360 403 SLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 403 ~~~~~d~~~l~sgs~Dg~V~ 422 (826)
+..+++|...|.|.
T Consensus 281 ------~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 281 ------DGKIAVGFDEGSVT 294 (794)
T ss_pred ------CCeEEEeccCCcEE
Confidence 56677777666543
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=1.5e-22 Score=246.88 Aligned_cols=231 Identities=14% Similarity=0.183 Sum_probs=170.2
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCCc
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
.++.++.+|.+.+||...- .....+..|...|++++|++ ++..+++++ |++|++|+.....
T Consensus 547 ~las~~~Dg~v~lWd~~~~-----------------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARS-----------------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred EEEEEeCCCeEEEEECCCC-----------------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 4556667888999987641 12334578999999999996 778899998 9999999765433
Q ss_pred eeecccccCCccee--e-CCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 225 LLDFETKLKDGSQS--H-SKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~-s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
.... ..+...+.+ | ++++.+|++|+.||+|++||+..... ++. .+..|...|+++.|. ++.+|++|
T Consensus 610 ~~~~-~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~--------~~~~h~~~V~~v~f~-~~~~lvs~ 678 (793)
T PLN00181 610 SIGT-IKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-PLC--------TMIGHSKTVSYVRFV-DSSTLVSS 678 (793)
T ss_pred EEEE-EecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-cce--------EecCCCCCEEEEEEe-CCCEEEEE
Confidence 3222 223355666 6 56799999999999999999943321 111 124688899999997 67899999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
+.|++|+|||++...... ..... ..+..|...+.+++|++++.+||+|+.||.|++|+...+..+
T Consensus 679 s~D~~ikiWd~~~~~~~~-----------~~~~l----~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~ 743 (793)
T PLN00181 679 STDNTLKLWDLSMSISGI-----------NETPL----HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV 743 (793)
T ss_pred ECCCEEEEEeCCCCcccc-----------CCcce----EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence 999999999997432100 01111 233456677999999999999999999999999998766544
Q ss_pred Eeeec----------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 382 YQKHI----------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 382 ~~~~~----------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
..... ...+...|.+++|++ ++.+|++|+.||.|+||++
T Consensus 744 ~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~------~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 744 LSYKFKTIDPVSGLEVDDASQFISSVCWRG------QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEecccCCcccccccCCCCcEEEEEEEcC------CCCeEEEecCCCcEEEEec
Confidence 22211 123456799999998 5899999999999999986
No 32
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=235.65 Aligned_cols=244 Identities=16% Similarity=0.232 Sum_probs=185.9
Q ss_pred ec-ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-------------------------------------------
Q 003360 188 MP-FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV------------------------------------------- 222 (826)
Q Consensus 188 l~-~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~------------------------------------------- 222 (826)
+. .|.+.|.+++|++||++||+|+ |+.|++|....
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 45 7999999999999999999999 99999993111
Q ss_pred ------------------CceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccC
Q 003360 223 ------------------PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLS 282 (826)
Q Consensus 223 ------------------~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h 282 (826)
.++.. ..+|++.|.. |+.+ ++|++++.|.|||+|++..+. +++.+ .|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~e-f~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~--CL~~F---------~H 408 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCE-FKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE--CLKVF---------SH 408 (712)
T ss_pred ccCCccccCCCccccccccchhh-hhccchhheecccccC-CeeEeccccccEEeecCCCcc--eeeEE---------ec
Confidence 00111 2458888888 6554 589999999999999995444 22333 48
Q ss_pred CCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE
Q 003360 283 GIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL 361 (826)
Q Consensus 283 ~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 361 (826)
..-||||+|+| |.++|++|+-||.||||.+...+. +.....+.-||+++|.|+|+..
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V----------------------v~W~Dl~~lITAvcy~PdGk~a 466 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV----------------------VDWNDLRDLITAVCYSPDGKGA 466 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCee----------------------EeehhhhhhheeEEeccCCceE
Confidence 89999999999 679999999999999999973221 2223345679999999999999
Q ss_pred EEEecCCeEEEEecCCCeeEEeeecccC-----CCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 362 AVGSDQGYVYLLDTEGPTVLYQKHIASD-----ISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l~~~~~~~~-----~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
++|+.+|.+++|++.+.+.....++... ....|+.++|.|. +...+++.++|..|+|+|.+.-.++..|.
T Consensus 467 vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~-----~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 467 VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG-----DPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred EEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC-----CCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 9999999999999999887755554322 1227999999985 45578899999999999998778887776
Q ss_pred ccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC-cEEEEeccc
Q 003360 437 IHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AACAYSLSH 500 (826)
Q Consensus 437 ~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~-~irv~sl~~ 500 (826)
+..+..+.... .+..++.+||.++|+ .|+||++..
T Consensus 542 G~~n~~SQ~~A-----------------------------sfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 542 GFRNTSSQISA-----------------------------SFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccccCCcceee-----------------------------eEccCCCEEEEeecCceEEEEeCCC
Confidence 55554332111 233456677777776 899999863
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.1e-23 Score=196.32 Aligned_cols=243 Identities=17% Similarity=0.241 Sum_probs=194.6
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
....+..|.++|..+.|+-+|.+.++++ |.++++|+.....+.....+|...|.. .+.|...+++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 3345788999999999999999999988 999999976544444333889888988 7788889999999999999999
Q ss_pred -CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 261 -SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 261 -s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
+++. ...+.+|.+.|+.+.|+.++..+++|+.|.+|++||.+......
T Consensus 89 ~TGkv-----------~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-------------------- 137 (307)
T KOG0316|consen 89 NTGKV-----------DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-------------------- 137 (307)
T ss_pred ccCee-----------eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc--------------------
Confidence 5544 22356899999999999999999999999999999999654421
Q ss_pred EEE-eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 340 VKV-MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 340 ~~~-~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
++. ......|.++..+ +..++.|+-||++|.||++.++.. .. -...||+++.|++ |+++.++++.|
T Consensus 138 iQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~--sD---y~g~pit~vs~s~------d~nc~La~~l~ 204 (307)
T KOG0316|consen 138 IQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS--SD---YFGHPITSVSFSK------DGNCSLASSLD 204 (307)
T ss_pred cchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceee--hh---hcCCcceeEEecC------CCCEEEEeecc
Confidence 111 1224558888886 446999999999999999999876 22 3456999999999 79999999999
Q ss_pred CcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC-cEEEEe
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AACAYS 497 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~-~irv~s 497 (826)
+++++.|-.||+++..+.+|.+...+.-|. ..+.+..|+.|+|+ .+++|+
T Consensus 205 stlrLlDk~tGklL~sYkGhkn~eykldc~-----------------------------l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 205 STLRLLDKETGKLLKSYKGHKNMEYKLDCC-----------------------------LNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred ceeeecccchhHHHHHhcccccceeeeeee-----------------------------ecccceeEEeccCCceEEEEE
Confidence 999999999999999998888764322221 12234577888776 799999
Q ss_pred cc
Q 003360 498 LS 499 (826)
Q Consensus 498 l~ 499 (826)
|-
T Consensus 256 Lv 257 (307)
T KOG0316|consen 256 LV 257 (307)
T ss_pred ec
Confidence 97
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.5e-23 Score=220.92 Aligned_cols=243 Identities=13% Similarity=0.142 Sum_probs=196.0
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc-eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP-LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~-~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
+..+.+.|.++.|+|..+.++++. .|.+.+|+...+. ...+ .--.-+|.+ |-..-+++++|+.|..||||+..+.
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 345788999999999999999999 9999999876533 2223 112334444 7788889999999999999999443
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
.. +..|+.|.+-|+||+.+|...+++++|.|-+|++||++..-. +. ..+.
T Consensus 88 ek----------V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa-----------------~~---qtfe 137 (794)
T KOG0276|consen 88 EK----------VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA-----------------CE---QTFE 137 (794)
T ss_pred ee----------eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee-----------------ee---eEEc
Confidence 32 445678999999999999999999999999999999984321 11 3445
Q ss_pred eccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 344 KINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 344 ~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
.|.-.|.+++|+| |...+|+++-|++|+||.+.++.+.+++. +|...|.++.|-+. .|.++|++|+.|.+|+
T Consensus 138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~----gdkpylIsgaDD~tiK 210 (794)
T KOG0276|consen 138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTG----GDKPYLISGADDLTIK 210 (794)
T ss_pred CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee---ccccCcceEEeccC----CCcceEEecCCCceEE
Confidence 5666799999999 56789999999999999999999987775 89999999999873 2567999999999999
Q ss_pred EEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC-cEEEEecc
Q 003360 423 VLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AACAYSLS 499 (826)
Q Consensus 423 iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~-~irv~sl~ 499 (826)
|||..|..|+.++.+|.++.+.+ .++|.=++++.|+|+ ++|||.-.
T Consensus 211 vWDyQtk~CV~TLeGHt~Nvs~v-------------------------------~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 211 VWDYQTKSCVQTLEGHTNNVSFV-------------------------------FFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred EeecchHHHHHHhhcccccceEE-------------------------------EecCCCcEEEEecCCccEEEecCc
Confidence 99999999999998888764422 233444688888775 89999765
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2e-22 Score=204.93 Aligned_cols=289 Identities=11% Similarity=0.129 Sum_probs=215.9
Q ss_pred ccccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeee
Q 003360 4 NVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYA 83 (826)
Q Consensus 4 ~~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~ 83 (826)
++.+.+.++...|+.+-+ +|+-..++++++|++|.+||..++...+.++. +...+..+.+..
T Consensus 99 ~l~~~l~g~r~~vt~v~~-hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG----------------Ht~sv~di~~~a- 160 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIF-HPSEALVVSASEDATIKVFDTETGELERSLRG----------------HTDSVFDISFDA- 160 (406)
T ss_pred Cchhhhhccccceeeeee-ccCceEEEEecCCceEEEEEccchhhhhhhhc----------------cccceeEEEEec-
Confidence 455666667778888877 58999999999999999999999722221110 001122222111
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
.|.++ +..+.+-++.+||..
T Consensus 161 ---~Gk~l---------------------------------------------------------~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 161 ---SGKYL---------------------------------------------------------ATCSSDLSAKLWDFD 180 (406)
T ss_pred ---CccEE---------------------------------------------------------EecCCccchhheeHH
Confidence 11111 122222235678877
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eC
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HS 240 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s 240 (826)
+....+ ..+..|+-.|.++.|-|.|.++++++ |.+|+.|.-..........+|..-|.. ..
T Consensus 181 ~~~~c~----------------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 181 TFFRCI----------------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN 244 (406)
T ss_pred HHHHHH----------------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec
Confidence 632211 22468889999999999999999999 999999976554433333778887777 78
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC---------------CEEEEEeCCC
Q 003360 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS---------------RVLVSGDQSG 305 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~---------------~~Lasgs~dg 305 (826)
.||.++++|+.|.+|++|-...+.. ...+..|.-+|-|++|.|.. +++.+++.|+
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~~~----------k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATKQC----------KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccchh----------hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 8999999999999999999944431 11134677899999998742 4899999999
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
+|++||+.++.+. +....|...|..++|+|.|++|+++.+|++++|||++..+|+.+..
T Consensus 315 tIk~wdv~tg~cL---------------------~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 315 TIKIWDVSTGMCL---------------------FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred eEEEEeccCCeEE---------------------EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 9999999965442 5667788889999999999999999999999999999999995554
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
.|..-|+++.|.. +..++++|+-|.++++|..
T Consensus 374 ---ah~hfvt~lDfh~------~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 374 ---AHEHFVTSLDFHK------TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ---CCcceeEEEecCC------CCceEEeccccceeeeeec
Confidence 6788999999998 4789999999999999974
No 36
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-22 Score=244.40 Aligned_cols=255 Identities=19% Similarity=0.087 Sum_probs=174.2
Q ss_pred CCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeee-CC-ceEEEEEEeeceEEEeccCCccccccccc
Q 003360 481 KQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS-GS-DVGLMLLFTSGKFEIRSLPELSLLKETSI 558 (826)
Q Consensus 481 ~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~-~~-~~~lv~~~~~G~I~i~slP~L~~l~~~sl 558 (826)
...++++|+++.+|+|+++ .+.+.+.....+.+|.-.+.+.. .+ ..+++++..+|+|++++||+|+++...
T Consensus 723 ~~~~~~i~~e~~~~v~~~~-----~q~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~g~i~~~slp~Lre~~~~-- 795 (993)
T KOG1983|consen 723 IEVPTLICGESAIRVFSVP-----AQQCKELQLIHEAPVVGISVLDGISKPEPSLDLLDANGHISKHSLPSLREEQFK-- 795 (993)
T ss_pred cccceEEecCCccceeccc-----ccccccceeeccccceeeeeeecccCccceeeEeecCCCccceecchhhhhhcc--
Confidence 3589999999999999999 45555555555455555555555 44 799999999999999999999999842
Q ss_pred cceeecCCCCCCCccccee----ccCCCcEEEEcCCeeeeeeeecccCCccccCC----CccccCCCCcCcccccccccc
Q 003360 559 RGFVYLTPKPNSLSNTLMC----SSWDGELIMVNGNQEAFFISALRQRDFFRFLD----SACQVYSYDPTLLQEGVVSAS 630 (826)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~----~s~~G~i~~~~g~~e~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~ 630 (826)
+.+. |..+.......+ ++..|+..+..++.|++. .+..++.+..+.+ +++.++.+.+.+.+.-.
T Consensus 796 --v~~l-p~~~~~i~~~~~~~~g~~~~~~~~~~~s~~~~~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 867 (993)
T KOG1983|consen 796 --VLPL-PLVKNIIKNKLTAGNGFSVHKVGELAASAVERSK-KTLEQELQELTNLGDISVLGLPLLKLEIPYAPIR---- 867 (993)
T ss_pred --ccCC-cchhhhcccchhccccccccchhheecchhhhhh-ccccccccccccccccccccccccchhhhhhhhh----
Confidence 2222 222222233333 788899999999999998 8888888887777 78888888776666542
Q ss_pred ccccccccceeceeecc-CcCCCCCcccchhhHHhHHHHHhhhcCCCCCCCCcCCCCCCcccCccccccccccCCCCcCC
Q 003360 631 IVQTEKKKGIFGSVLKG-NKTKQAPDVEREETWEIIEELATIFSTANFQCDSENTVNLDLEEDEDLLNIDDIDLDGIREK 709 (826)
Q Consensus 631 ~~~~~~~~~~~~~~~k~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 709 (826)
.++++| ++++.... +.-+..||..++|.++.+-+
T Consensus 868 -----------~~~~~g~l~~g~~~~---------------------------------~~~~i~~l~~e~~~~~~~~~- 902 (993)
T KOG1983|consen 868 -----------QSDIKGVLFFGTVGC---------------------------------DPYKISELEGERISLATKYE- 902 (993)
T ss_pred -----------ccccccccccCcCCC---------------------------------Chhhhcccccccccccccce-
Confidence 344455 33331111 11234556666666664332
Q ss_pred CcccchhhhhhHHHhhhhhhhhcccchhcccccccCCcccccccccccchHHHHHhhCCCCCCcc--hHhHHHHHHHHHh
Q 003360 710 PKEQSMLAVMNKQILSSKLQAFKGKWKQMKGKNEKNNMKEEQQDEKTGAVDQIKKKYGFSHSGEP--SVAKMAESKLHEN 787 (826)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~ 787 (826)
+.+ - ...+.+ .++. +++++.++ +.+..+|+++. +.+ +++.+|+++|+||
T Consensus 903 --~~~---~---------------~~~~~~---~~~~---~~~~~~~~--~~~~~~~~~a~-~~~~~~~~~~a~~~l~e~ 953 (993)
T KOG1983|consen 903 --VVP---I---------------SSGDVS---SRSS---ARAILGPP--DGEEPKYAQAS-GVSSGSAASGALQPLNER 953 (993)
T ss_pred --eec---c---------------ccccCC---cccc---cccccCCC--cccchhhcccc-cccccchhhhcchhhHhh
Confidence 111 0 001100 0111 23555554 23344555555 333 3999999999999
Q ss_pred hhhccccchhhHHHHhhhhhHHHHHHHHHHHHhhccc
Q 003360 788 SKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHDKK 824 (826)
Q Consensus 788 ~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k~ 824 (826)
+|||+++|+||++|+++|++||++|||++.+++.||.
T Consensus 954 ~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~kk~ 990 (993)
T KOG1983|consen 954 GERLSRLEERTAEMANSAKQFSSTAHELTGKYKVKKW 990 (993)
T ss_pred ccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhhhh
Confidence 9999999999999999999999999999999999985
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1e-22 Score=207.03 Aligned_cols=261 Identities=11% Similarity=0.119 Sum_probs=210.9
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
.+..+..|..+|+.+.|+|+-...++++ |.++++|+.....+.....+|+.+|.. |+..|++|+|++.|-++++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 3455788999999999999999999998 999999988776665555889999988 9999999999999999999998
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
..-. .+ ++ ...+|.-.|.+++|-|.+.++++++.|.+|+.|++.++-+. .
T Consensus 180 ~~~~-~c---~k-----s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv---------------------~ 229 (406)
T KOG0295|consen 180 DTFF-RC---IK-----SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCV---------------------K 229 (406)
T ss_pred HHHH-HH---HH-----HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeE---------------------E
Confidence 3211 11 11 12467789999999999999999999999999999865441 3
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCC---------CCcE
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF---------EKNF 411 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~---------d~~~ 411 (826)
.+..|...|..++.+.||.++|+++.|.+|++|-+.++.|...+ ..|.-+|.+++|.|...+.. .+++
T Consensus 230 t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l---R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~ 306 (406)
T KOG0295|consen 230 TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL---REHEHPVECIAWAPESSYPSISEATGSTNGGQV 306 (406)
T ss_pred eccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh---hccccceEEEEecccccCcchhhccCCCCCccE
Confidence 34456667999999999999999999999999999999776333 47888999999998654321 2479
Q ss_pred EEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC
Q 003360 412 LVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK 491 (826)
Q Consensus 412 l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~ 491 (826)
+.+++.|++|++||+.+|.++-++.+|.+-.. .+ .++|.+.|++.|.|+
T Consensus 307 l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr---~~----------------------------af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 307 LGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR---GV----------------------------AFSPGGKYILSCADD 355 (406)
T ss_pred EEeecccceEEEEeccCCeEEEEEecccceee---ee----------------------------EEcCCCeEEEEEecC
Confidence 99999999999999999999999877765311 11 356678899999886
Q ss_pred -cEEEEeccccccccceeeeeee
Q 003360 492 -AACAYSLSHAVQGVKKVLYKKK 513 (826)
Q Consensus 492 -~irv~sl~~~~~g~~k~~~k~~ 513 (826)
.+|+|++. ...+.....
T Consensus 356 ktlrvwdl~-----~~~cmk~~~ 373 (406)
T KOG0295|consen 356 KTLRVWDLK-----NLQCMKTLE 373 (406)
T ss_pred CcEEEEEec-----cceeeeccC
Confidence 89999998 444554444
No 38
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=3.7e-22 Score=203.89 Aligned_cols=272 Identities=17% Similarity=0.252 Sum_probs=203.1
Q ss_pred CCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEEEccCCcCccceeE
Q 003360 26 GSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQ 105 (826)
Q Consensus 26 g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli~gg~~~~~~~~~~ 105 (826)
+.+|++|+.||.+++||.+... ......+..||..+.|.-.++..+ +|+.++.|. +
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~-----------------~~~~~Ght~~ik~v~~v~~n~~~~-~fvsas~Dq------t 170 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKS-----------------IKTIVGHTGPIKSVAWVIKNSSSC-LFVSASMDQ------T 170 (423)
T ss_pred CceEEEeecCCeeEEEecCCce-----------------EEEEecCCcceeeeEEEecCCccc-eEEEecCCc------e
Confidence 7899999999999999987631 011234566899999987555544 566666543 1
Q ss_pred EEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccce
Q 003360 106 IVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVM 185 (826)
Q Consensus 106 vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~ 185 (826)
++. +.|+......-. .
T Consensus 171 l~L-------------------------------------------------w~~~~~~~~~~~---------------~ 186 (423)
T KOG0313|consen 171 LRL-------------------------------------------------WKWNVGENKVKA---------------L 186 (423)
T ss_pred EEE-------------------------------------------------EEecCchhhhhH---------------H
Confidence 111 122222210000 0
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC--------------------------CceeecccccCCccee
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV--------------------------PPLLDFETKLKDGSQS 238 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~--------------------------~~~~~~~~~h~g~V~~ 238 (826)
..-.+|...|-+++..+++..+++|+ |.++.+|+... .++.. ..+|++.|.+
T Consensus 187 ~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt-l~GHt~~Vs~ 265 (423)
T KOG0313|consen 187 KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT-LEGHTEPVSS 265 (423)
T ss_pred hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE-ecccccceee
Confidence 01138999999999999999999999 99999996100 11222 3679999999
Q ss_pred --eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 239 --HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 --~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
|++ ...+.+++.|.+|+.||+ +++.. ..+ ....+.+|++.+|...+|++|+.|..+++||.+++
T Consensus 266 V~w~d-~~v~yS~SwDHTIk~WDletg~~~---~~~---------~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 266 VVWSD-ATVIYSVSWDHTIKVWDLETGGLK---STL---------TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred EEEcC-CCceEeecccceEEEEEeecccce---eee---------ecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence 666 778999999999999999 55442 111 13368999999999999999999999999999965
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCe-eEEeeecccCCCCC
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPT-VLYQKHIASDISSG 393 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~-~l~~~~~~~~~~~~ 393 (826)
. +.... ..+..|+..|.++.|+|.. ..|++|+.|+++++||+|+.. .+|... +|...
T Consensus 333 ~---------------gs~v~---~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~---~h~DK 391 (423)
T KOG0313|consen 333 D---------------GSVVS---QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA---GHNDK 391 (423)
T ss_pred C---------------CceeE---EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec---cCCce
Confidence 2 22322 5677888899999999954 568999999999999999987 776654 88999
Q ss_pred eeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 394 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|.++.|.. +..+++|+.|.+|+|+...
T Consensus 392 vl~vdW~~-------~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 392 VLSVDWNE-------GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEeccC-------CceEEeccCcceEEEeccc
Confidence 99999986 8899999999999998754
No 39
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.90 E-value=5.1e-22 Score=202.11 Aligned_cols=283 Identities=15% Similarity=0.207 Sum_probs=201.8
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~ 225 (826)
-+..++.+..-++|+..+ ...+..++.|...|+++.|+.++.+|++|. ++.+++|.......
T Consensus 78 l~aTGGgDD~AflW~~~~-----------------ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~ 140 (399)
T KOG0296|consen 78 LVATGGGDDLAFLWDIST-----------------GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE 140 (399)
T ss_pred eEEecCCCceEEEEEccC-----------------CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce
Confidence 344445555667888766 125667899999999999999999999999 99999997654332
Q ss_pred e-ecccccCCccee-eCCCCCEEEEEECCCcEEEEeCCC-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe
Q 003360 226 L-DFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDVSC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD 302 (826)
Q Consensus 226 ~-~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs 302 (826)
. .+...-.+-++- |||.+.+|+.|+.||+|-+|.+.. ... +.+.+|..++++=.|.|+|+.+++|.
T Consensus 141 ~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~-----------kv~~Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC-----------KVMSGHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee-----------eEecCCCCCcccccccCCCceEEEEe
Confidence 2 221111122233 999999999999999999999943 331 12357889999999999999999999
Q ss_pred CCCcEEEEEeCCCCCccccc------e----------EEEeecCCCCeEEEEE----EEEe----------eccCC---e
Q 003360 303 QSGMVRIFKLKYEPHAIENS------F----------LSFTGSKKGNSHIIHS----VKVM----------KINGS---I 349 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~------~----------~~i~~s~~~~~~~~~~----~~~~----------~~~~~---V 349 (826)
.||+|++|+..+++..+... . ..+..++++..+.+.. +... .+... |
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 99999999999884433211 1 1233344443332211 1111 11122 4
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
-++.++..-.+.|+|+-||+|.|||+...++.+.. .|..+|+.+.|.+ ..+|++++.||.|+.||.++|
T Consensus 290 e~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c----~he~~V~~l~w~~-------t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 290 ESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC----EHEDGVTKLKWLN-------TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred hhcccccccchhhcccccceEEEEecccchhheec----cCCCceEEEEEcC-------cchheeeccCceEEeeecccc
Confidence 44555556678899999999999999887766333 5788899999987 688999999999999999999
Q ss_pred ceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeec-CcEEEEecc
Q 003360 430 NMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSE-KAACAYSLS 499 (826)
Q Consensus 430 ~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se-~~irv~sl~ 499 (826)
+++.++.+|... ++.+.+. ++..+||..++ +..+||..+
T Consensus 359 ~l~~~y~GH~~~---Il~f~ls----------------------------~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 359 QLKFTYTGHQMG---ILDFALS----------------------------PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ceEEEEecCchh---eeEEEEc----------------------------CCCcEEEEecCCCeEEEEecC
Confidence 999999888643 3444332 23345555555 589999875
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.90 E-value=1.9e-21 Score=197.92 Aligned_cols=333 Identities=14% Similarity=0.155 Sum_probs=244.2
Q ss_pred ccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCC
Q 003360 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADG 85 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~ 85 (826)
+.++..|..++.++.- +|+.+++|||..|-.-.+|++.++..+- .-..|+..|+.+.|+.
T Consensus 57 ~~tF~~H~~svFavsl-~P~~~l~aTGGgDD~AflW~~~~ge~~~----------------eltgHKDSVt~~~Fsh--- 116 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSL-HPNNNLVATGGGDDLAFLWDISTGEFAG----------------ELTGHKDSVTCCSFSH--- 116 (399)
T ss_pred eeehhhcCCceEEEEe-CCCCceEEecCCCceEEEEEccCCccee----------------EecCCCCceEEEEEcc---
Confidence 3455567778999886 5799999999999999999999872111 1235677899999987
Q ss_pred CCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhH
Q 003360 86 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 165 (826)
Q Consensus 86 ~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i 165 (826)
+|.++..|+.+- .+.|+.. .++.... ++..++.|+.++.-- +....+++++.+|.+++|....-
T Consensus 117 -dgtlLATGdmsG----~v~v~~~--stg~~~~----~~~~e~~dieWl~WH-----p~a~illAG~~DGsvWmw~ip~~ 180 (399)
T KOG0296|consen 117 -DGTLLATGDMSG----KVLVFKV--STGGEQW----KLDQEVEDIEWLKWH-----PRAHILLAGSTDGSVWMWQIPSQ 180 (399)
T ss_pred -CceEEEecCCCc----cEEEEEc--ccCceEE----EeecccCceEEEEec-----ccccEEEeecCCCcEEEEECCCc
Confidence 788888887633 3333333 3332222 223677888888532 33466888999999999977551
Q ss_pred HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-ceeecccccCCccee--eCC
Q 003360 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-PLLDFETKLKDGSQS--HSK 241 (826)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~~~~~~~~h~g~V~~--~s~ 241 (826)
.....+++|..+++|-.|.|+|+.++++. |++|++|+.+.. ++..+...-.+..++ +..
T Consensus 181 -----------------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~ 243 (399)
T KOG0296|consen 181 -----------------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL 243 (399)
T ss_pred -----------------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc
Confidence 13345789999999999999999999998 999999976543 344442222223344 788
Q ss_pred CCCEEEEEECCCcEEEEeC-CCCceeeeeeccccccccc-ccCC---CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 242 VKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDF-SLSG---IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~-~~h~---~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
.+..+++|+.++.+++-+. +++.. ...... ...+ ..+. ..|-.+.||..-.+.|+|+-||+|.|||+....
T Consensus 244 ~~~~~~~g~~e~~~~~~~~~sgKVv---~~~n~~-~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 244 AGSTLTKGNSEGVACGVNNGSGKVV---NCNNGT-VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred ccceeEeccCCccEEEEccccceEE---EecCCC-CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 8899999999999999988 55442 112210 0000 1122 345555556666789999999999999998443
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeE
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 396 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~s 396 (826)
. .....|..+|+.+.|-+ ..+|++++.||.|+.||.|+|.++++.. +|..+|..
T Consensus 320 ~----------------------R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~---GH~~~Il~ 373 (399)
T KOG0296|consen 320 L----------------------RHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT---GHQMGILD 373 (399)
T ss_pred h----------------------heeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe---cCchheeE
Confidence 2 22345677899999998 5689999999999999999999997664 99999999
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++.+| +.+.++++|.|++.+||+..
T Consensus 374 f~ls~------~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 FALSP------QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcC------CCcEEEEecCCCeEEEEecC
Confidence 99999 69999999999999999864
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.90 E-value=7.1e-22 Score=196.44 Aligned_cols=201 Identities=14% Similarity=0.205 Sum_probs=168.8
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc--CCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEE
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK--SVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFW 258 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~--~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriW 258 (826)
+.+.++.|.+.|.++.|+|+|..+++|+ |..|.+|+. ....+... .+|++.|.. |.++++.|++++.|.+|+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4456899999999999999999999998 999999973 22233333 689999999 99999999999999999999
Q ss_pred eC-CCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 259 DV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 259 D~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|+ +++. ++ .+.+|..-|+++.-+.-+ .++++|+.||+++|||+++...
T Consensus 118 D~~tG~~---~r--------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~------------------- 167 (338)
T KOG0265|consen 118 DAETGKR---IR--------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA------------------- 167 (338)
T ss_pred eccccee---ee--------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-------------------
Confidence 99 4444 12 234788888888744444 5778999999999999995433
Q ss_pred EEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 337 IHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
+++...+.+++++.|...+..+.+|.-|+.|++||++...+++... +|..+|+.+..++ ++.++.+-+
T Consensus 168 ---~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls---Gh~DtIt~lsls~------~gs~llsns 235 (338)
T KOG0265|consen 168 ---IKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS---GHADTITGLSLSR------YGSFLLSNS 235 (338)
T ss_pred ---hhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEee---cccCceeeEEecc------CCCcccccc
Confidence 3444446679999999999999999999999999999999997664 9999999999999 499999999
Q ss_pred CCCcEEEEECC
Q 003360 417 KDSSVLVLDSD 427 (826)
Q Consensus 417 ~Dg~V~iwd~~ 427 (826)
.|.++++||.+
T Consensus 236 Md~tvrvwd~r 246 (338)
T KOG0265|consen 236 MDNTVRVWDVR 246 (338)
T ss_pred ccceEEEEEec
Confidence 99999999987
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=2.4e-21 Score=220.25 Aligned_cols=256 Identities=20% Similarity=0.217 Sum_probs=192.3
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMV 307 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V 307 (826)
+.+...|.+ |+++|+++++++.|+.+++|++....... + .....|...|+.++|+|+++++++|+.|++|
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~---~-----~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNL---L-----RELSGHTRGVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchh---h-----ccccccccceeeeEECCCCcEEEEecCCceE
Confidence 344677777 99999999999999999999993222001 1 1124688999999999999999999999999
Q ss_pred EEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 308 RIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
+|||+... +... ..+..|...|++++|+|+|+++++|+.|++|+|||+++++++..+
T Consensus 228 riwd~~~~----------------~~~~----~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l--- 284 (456)
T KOG0266|consen 228 RIWDLKDD----------------GRNL----KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL--- 284 (456)
T ss_pred EEeeccCC----------------CeEE----EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee---
Confidence 99999421 1221 334478889999999999999999999999999999999988444
Q ss_pred cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc--eEEeeeccCCCCCcceEEEEecCCCCcccCccccc
Q 003360 388 SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN--MLSTNLIHPKKPSRALFMQILNGQDGLARGANLSN 465 (826)
Q Consensus 388 ~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~--~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~ 465 (826)
.+|..+|++++|.+ |+.+|++++.|+.|++||..++. ++..+..+.... .+.++
T Consensus 285 ~~hs~~is~~~f~~------d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~----------------- 340 (456)
T KOG0266|consen 285 KGHSDGISGLAFSP------DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSV----------------- 340 (456)
T ss_pred eccCCceEEEEECC------CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEE-----------------
Confidence 48899999999999 69999999999999999999998 444432222221 11111
Q ss_pred cccccCCCCCCCCCCCCCEEEEeecC-cEEEEeccccccccceeeeeeecCCC-CceeeEeeeeCCceEEEEEEeeceEE
Q 003360 466 VAGMNKGSPKENAVPKQWFVLLCSEK-AACAYSLSHAVQGVKKVLYKKKFHSS-SCCWASTFYSGSDVGLMLLFTSGKFE 543 (826)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~vv~~se~-~irv~sl~~~~~g~~k~~~k~~~~~~-~c~~~~~~~~~~~~~lv~~~~~G~I~ 543 (826)
.+++++.|+++.+++ .+++|++.. .+++........ .+|+...+....+..++..+.++.|.
T Consensus 341 -----------~fsp~~~~ll~~~~d~~~~~w~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~ 404 (456)
T KOG0266|consen 341 -----------QFSPNGKYLLSASLDRTLKLWDLRS-----GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVY 404 (456)
T ss_pred -----------EECCCCcEEEEecCCCeEEEEEccC-----CcceeeecccCCcceeEecccccCCCCeEEEEeCCceEE
Confidence 345666777777776 999999983 222222222212 24444444457788999999999999
Q ss_pred EeccCCccccccc
Q 003360 544 IRSLPELSLLKET 556 (826)
Q Consensus 544 i~slP~L~~l~~~ 556 (826)
++.+.++..+...
T Consensus 405 ~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 405 VWDSSSGGILQRL 417 (456)
T ss_pred EEeCCccchhhhh
Confidence 9999987776654
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.2e-21 Score=213.34 Aligned_cols=258 Identities=14% Similarity=0.146 Sum_probs=197.8
Q ss_pred CCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC
Q 003360 143 PKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS 221 (826)
Q Consensus 143 ~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~ 221 (826)
+..+-+++..-+|.|.+||... .+++ -.+..|+++|..+.|+|..+.+++|+ |-.|++|+-+
T Consensus 19 P~rPwILtslHsG~IQlWDYRM-~tli----------------~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 19 PKRPWILTSLHSGVIQLWDYRM-GTLI----------------DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred CCCCEEEEeecCceeeeehhhh-hhHH----------------hhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 4456678888999999999865 1111 22478999999999999999999999 7889999876
Q ss_pred CCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 222 VPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 222 ~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
.....-...+|-..|.. ||+...+|+++|.|.|||||+...+. ++..+ .+|.--|.|..|+|...+++
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~--~iavl--------tGHnHYVMcAqFhptEDlIV 151 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK--CIAVL--------TGHNHYVMCAQFHPTEDLIV 151 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc--eEEEE--------ecCceEEEeeccCCccceEE
Confidence 54333334899999988 99999999999999999999994443 13334 47888999999999999999
Q ss_pred EEeCCCcEEEEEeCCCCCccc--c----ceEEEeecCC--C-CeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeE
Q 003360 300 SGDQSGMVRIFKLKYEPHAIE--N----SFLSFTGSKK--G-NSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYV 370 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~~~~~--~----~~~~i~~s~~--~-~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V 370 (826)
|+|-|-+|||||+..-...+. . .+.....+.+ | .... -......|...|.-++|+|.-.++++|++|..|
T Consensus 152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV-VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV-VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 230 (1202)
T ss_pred EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee-eeeeecccccccceEEecCCcceEEecCCccee
Confidence 999999999999875422110 0 0000001000 0 0111 003344567789999999999999999999999
Q ss_pred EEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 371 YLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 371 ~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
++|.+.. +..+......+|...|.++-|+|. .+++++.|.|++|+|||+..-+.+.++
T Consensus 231 KlWrmne-tKaWEvDtcrgH~nnVssvlfhp~------q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 231 KLWRMNE-TKAWEVDTCRGHYNNVSSVLFHPH------QDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred eEEEecc-ccceeehhhhcccCCcceEEecCc------cceeEecCCCccEEEEecccccceeee
Confidence 9999854 334556666799999999999995 889999999999999999987777776
No 44
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=5.7e-22 Score=197.11 Aligned_cols=228 Identities=15% Similarity=0.229 Sum_probs=179.5
Q ss_pred CCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC-------------------CCceeecccccCCc
Q 003360 176 SPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS-------------------VPPLLDFETKLKDG 235 (826)
Q Consensus 176 ~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~-------------------~~~~~~~~~~h~g~ 235 (826)
.+|.++.+....+..|.+++.+.+|++||.++++|+ |..|++++.. -|-+.++ ..|...
T Consensus 96 ~s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~de 174 (430)
T KOG0640|consen 96 SSPEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDE 174 (430)
T ss_pred CCCCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCc
Confidence 334444555556889999999999999999999999 9999998522 0222233 568899
Q ss_pred cee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeC
Q 003360 236 SQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 236 V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~ 313 (826)
|.+ |+|...+|++|+.|++|+++|++...... -.+ +-....+|.+|+|+|.|.+|++|..--++++||++
T Consensus 175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--A~K------~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--AFK------VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred ccceeecchhheEEeccCCCeEEEEecccHHHHH--HHH------HhhccceeeeEeecCCCceEEEecCCCceeEEecc
Confidence 998 99999999999999999999995543100 011 00122589999999999999999999999999998
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCC-CC
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI-SS 392 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~-~~ 392 (826)
+-++. +..+++ ..|.+.|+++.+|+.|.+.++|+.||.|++||--+++|+.++. ..| .+
T Consensus 247 T~Qcf-------vsanPd-----------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~--~AH~gs 306 (430)
T KOG0640|consen 247 TYQCF-------VSANPD-----------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG--NAHGGS 306 (430)
T ss_pred ceeEe-------eecCcc-----------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH--hhcCCc
Confidence 65441 222222 2347889999999999999999999999999999999984443 344 45
Q ss_pred CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
.|.+..|.. ++.++++.+.|..|++|.+.+|+++..+.+.
T Consensus 307 evcSa~Ftk------n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 307 EVCSAVFTK------NGKYILSSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred eeeeEEEcc------CCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence 788899988 5999999999999999999999999887543
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=4.9e-22 Score=201.13 Aligned_cols=226 Identities=15% Similarity=0.215 Sum_probs=178.6
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
-+++|..+.++++-.||+..-+ +.....+|-+.|.|++.+|.-+.+++++ |.++|+|+.+..
T Consensus 205 HpYlFs~gedk~VKCwDLe~nk-----------------vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 205 HPYLFSAGEDKQVKCWDLEYNK-----------------VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred CceEEEecCCCeeEEEechhhh-----------------hHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc
Confidence 3678899999999999987621 2222357889999999999999999999 999999987654
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las 300 (826)
.......+|++.|.. +.|....++||+.|++||+||+ .++.. ..+ ..|...|.+++.+|.-..||+
T Consensus 268 ~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~---~tl--------t~hkksvral~lhP~e~~fAS 336 (460)
T KOG0285|consen 268 ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM---ITL--------THHKKSVRALCLHPKENLFAS 336 (460)
T ss_pred ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee---Eee--------ecccceeeEEecCCchhhhhc
Confidence 333333899999999 7777888999999999999999 55542 222 357789999999999999999
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
++.|. ++-|++-.+... ..+..|++-|.+|+.+.|| .+++|+++|.+.+||.+++-.
T Consensus 337 as~dn-ik~w~~p~g~f~---------------------~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 337 ASPDN-IKQWKLPEGEFL---------------------QNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred cCCcc-ceeccCCccchh---------------------hccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 99884 889999754332 1234456779999999998 799999999999999998865
Q ss_pred EEeeecc-----cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 381 LYQKHIA-----SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 381 l~~~~~~-----~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
....... -.....|.+.+|... +..|++|..|.+|++|.-.
T Consensus 394 yQ~~~t~vqpGSl~sEagI~as~fDkt------g~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 394 YQRGQTIVQPGSLESEAGIFASCFDKT------GSRLITGEADKTIKMYKED 439 (460)
T ss_pred cccccccccCCccccccceeEEeeccc------CceEEeccCCcceEEEecc
Confidence 5332111 123457888899884 8999999999999999865
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=1e-20 Score=199.31 Aligned_cols=280 Identities=14% Similarity=0.176 Sum_probs=205.1
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCc
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPL 264 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~ 264 (826)
+..|..+|++++|+++++.+++++ ++.+.+|+............|...+.. |+++++++++++.||.|++||.....
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence 468999999999999999999998 999999976543333333567788855 99999999999999999999995432
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
. +. .+..|...|.++.|++++.++++++.||.|++||++.... . .....
T Consensus 85 ~--~~--------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------~----~~~~~ 133 (289)
T cd00200 85 C--VR--------TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-----------------L----TTLRG 133 (289)
T ss_pred c--eE--------EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-----------------E----EEecc
Confidence 1 11 1235667899999999999999998899999999973221 0 22224
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 345 INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
+...|++++|+|++.++++++.||.|++||++.++.+.... .+...|.++.|.+ ++..+++++.|+.|++|
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~------~~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSP------DGEKLLSSSSDGTIKLW 204 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe---cCccccceEEECC------CcCEEEEecCCCcEEEE
Confidence 56789999999999989988889999999999887775443 5677899999998 47789999999999999
Q ss_pred ECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEecccccc
Q 003360 425 DSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSHAVQ 503 (826)
Q Consensus 425 d~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~ 503 (826)
|..+++.+..+..+.. .+.++.+ .+++.++++++ ++.+++|++..
T Consensus 205 d~~~~~~~~~~~~~~~---~i~~~~~----------------------------~~~~~~~~~~~~~~~i~i~~~~~--- 250 (289)
T cd00200 205 DLSTGKCLGTLRGHEN---GVNSVAF----------------------------SPDGYLLASGSEDGTIRVWDLRT--- 250 (289)
T ss_pred ECCCCceecchhhcCC---ceEEEEE----------------------------cCCCcEEEEEcCCCcEEEEEcCC---
Confidence 9998887766533321 2233322 22345777777 88999999872
Q ss_pred ccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEe
Q 003360 504 GVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIR 545 (826)
Q Consensus 504 g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~ 545 (826)
.+.+...... ..... .+...+.+..++....+|.|++|
T Consensus 251 --~~~~~~~~~~-~~~i~-~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 251 --GECVQTLSGH-TNSVT-SLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred --ceeEEEcccc-CCcEE-EEEECCCCCEEEEecCCCeEEec
Confidence 2233322211 11111 11111445677888888988876
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-20 Score=185.37 Aligned_cols=207 Identities=13% Similarity=0.132 Sum_probs=170.6
Q ss_pred eeecccCCCEEEEEEeeC-CCeEEEec-CCcEEEeccCCCceee----cccccCCccee--eCCCCCEEEEEECCCcEEE
Q 003360 186 LKMPFLDSSITAMKLITG-NSFILSSA-DEDYSLLAKSVPPLLD----FETKLKDGSQS--HSKVKNLFITGHSDGAINF 257 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~~~~~~----~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVri 257 (826)
..++.|...|..++++|- |..|++++ |+.|++|....+.-.. +..+|+..|.+ |+|.|++|++|+.|.++-|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 457899999999999998 88999988 9999999776322222 23469999988 9999999999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
|.-....+.++..| ++|...|.|++|+++|++||++++|..|-||....+.. ..+.
T Consensus 88 w~k~~~efecv~~l--------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE---------------fec~- 143 (312)
T KOG0645|consen 88 WKKEDGEFECVATL--------EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE---------------FECI- 143 (312)
T ss_pred eecCCCceeEEeee--------eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc---------------EEEE-
Confidence 99866665554444 58999999999999999999999999999999873211 1221
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC-CC--eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE-GP--TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~-~~--~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
..+..|...|..+.|+|...+|++++.|.+|++|+-. .. .+..++ .+|...|.++.|.+. |..|++
T Consensus 144 --aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl---~g~~~TVW~~~F~~~------G~rl~s 212 (312)
T KOG0645|consen 144 --AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL---DGHENTVWSLAFDNI------GSRLVS 212 (312)
T ss_pred --eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe---cCccceEEEEEecCC------CceEEE
Confidence 4455677889999999998899999999999999876 32 344333 578889999999994 899999
Q ss_pred EECCCcEEEEECC
Q 003360 415 ATKDSSVLVLDSD 427 (826)
Q Consensus 415 gs~Dg~V~iwd~~ 427 (826)
++.|++|+||-..
T Consensus 213 ~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 213 CSDDGTVSIWRLY 225 (312)
T ss_pred ecCCcceEeeeec
Confidence 9999999999966
No 48
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=1.1e-20 Score=230.45 Aligned_cols=286 Identities=15% Similarity=0.239 Sum_probs=193.2
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC----c---eeecccccCCccee--eCC-CCCEEEEEECCCcEEE
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP----P---LLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINF 257 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~----~---~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVri 257 (826)
..|...|++++|++++.++++|+ |+.|++|+.... . .......+...+.+ |++ .+.+|++|+.||+|++
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 45888999999999999999999 999999964321 0 00011223445555 665 5789999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
||+..... +. .+..|...|++++|+| ++.+|++|+.||+|++||++.+..
T Consensus 560 Wd~~~~~~--~~--------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~------------------- 610 (793)
T PLN00181 560 WDVARSQL--VT--------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS------------------- 610 (793)
T ss_pred EECCCCeE--EE--------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-------------------
Confidence 99954431 11 2346889999999997 788999999999999999984432
Q ss_pred EEEEEEeeccCCeEEEEEc-cCCCEEEEEecCCeEEEEecCCCee-EEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 337 IHSVKVMKINGSIISLNMN-RNSQHLAVGSDQGYVYLLDTEGPTV-LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s-~~g~~lasGs~dG~V~vwD~~~~~~-l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
+........|.++.|+ ++|.+|++|+.||.|++||++.+.. +... .+|...|.++.|.. +.+|++
T Consensus 611 ---~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~---~~h~~~V~~v~f~~-------~~~lvs 677 (793)
T PLN00181 611 ---IGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM---IGHSKTVSYVRFVD-------SSTLVS 677 (793)
T ss_pred ---EEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe---cCCCCCEEEEEEeC-------CCEEEE
Confidence 2222345679999995 5799999999999999999987653 3222 47888999999964 788999
Q ss_pred EECCCcEEEEECCCC------ceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe
Q 003360 415 ATKDSSVLVLDSDNG------NMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC 488 (826)
Q Consensus 415 gs~Dg~V~iwd~~tg------~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~ 488 (826)
++.|++|++||+..+ ..+.++.+|... +.++ .+.+.+.+++++
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~---i~~v----------------------------~~s~~~~~lasg 726 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNV---KNFV----------------------------GLSVSDGYIATG 726 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCCCCC---eeEE----------------------------EEcCCCCEEEEE
Confidence 999999999999743 344444443321 1111 123344566666
Q ss_pred e-cCcEEEEecccccc------ccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEecc
Q 003360 489 S-EKAACAYSLSHAVQ------GVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSL 547 (826)
Q Consensus 489 s-e~~irv~sl~~~~~------g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~sl 547 (826)
+ ++.++||+...... .....+..............+.-.+.+..|++...+|.|+|+.+
T Consensus 727 s~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 727 SETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred eCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 5 56899999752100 00000000000000000111111266778899999999999864
No 49
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=4e-19 Score=197.50 Aligned_cols=499 Identities=12% Similarity=0.113 Sum_probs=308.5
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCC-ceE
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKA-SRL 90 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~-g~l 90 (826)
+..+|+-+| |-|.+++.+..+|.|.+|+..++......+ .+..+ ..... |+.+- +-+.+ ..+
T Consensus 113 ~~a~v~~l~---~fGe~lia~d~~~~l~vw~~s~~~~e~~l~-----~~~~~-----~~~~~-Ital~---HP~TYLNKI 175 (910)
T KOG1539|consen 113 HGAKVHLLL---PFGEHLIAVDISNILFVWKTSSIQEELYLQ-----STFLK-----VEGDF-ITALL---HPSTYLNKI 175 (910)
T ss_pred ccceEEEEe---eecceEEEEEccCcEEEEEecccccccccc-----ceeee-----ccCCc-eeeEe---cchhheeeE
Confidence 345777777 469999999999999999988851000000 01111 11111 33221 01111 122
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHh
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~ 170 (826)
+ .|.. ...+++|.+.... +...+.+....+..+..+|. =..+.+++.+|++++++...-+
T Consensus 176 v-vGs~----~G~lql~Nvrt~K------~v~~f~~~~s~IT~ieqsPa-----LDVVaiG~~~G~ViifNlK~dk---- 235 (910)
T KOG1539|consen 176 V-VGSS----QGRLQLWNVRTGK------VVYTFQEFFSRITAIEQSPA-----LDVVAIGLENGTVIIFNLKFDK---- 235 (910)
T ss_pred E-Eeec----CCcEEEEEeccCc------EEEEecccccceeEeccCCc-----ceEEEEeccCceEEEEEcccCc----
Confidence 2 2222 1235555554443 33333444433333333321 2346788999999999886521
Q ss_pred hccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceee-cccccCCccee--eCCCCCE
Q 003360 171 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLD-FETKLKDGSQS--HSKVKNL 245 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~-~~~~h~g~V~~--~s~~~~~ 245 (826)
..+++..-.+.|+.++|..||+.+++.+ .|.+.+|+.....+.. ....|.++|.. |-+...+
T Consensus 236 -------------il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epV 302 (910)
T KOG1539|consen 236 -------------ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPV 302 (910)
T ss_pred -------------EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCce
Confidence 2222222248999999999998887755 6899999876544443 35679899988 9999999
Q ss_pred EEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEe-CCCCEEEEEeCCCcEEEEEeCCCCCccc----
Q 003360 246 FITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYD-GTSRVLVSGDQSGMVRIFKLKYEPHAIE---- 320 (826)
Q Consensus 246 l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fs-p~~~~Lasgs~dg~V~iwd~~~~~~~~~---- 320 (826)
++|++.|.+.++|=...+.-.+ ..|+.. .+|..+..||.|. .++..+.+++.|++.+.|.+.......+
T Consensus 303 l~ta~~DnSlk~~vfD~~dg~p-R~LR~R-----~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~ 376 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDGVP-RLLRSR-----GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL 376 (910)
T ss_pred EeeccCCCceeEEEeeCCCCcc-hheeec-----cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence 9999999999999662111000 113322 5799999999998 6788999999999999987754311000
Q ss_pred -------------------cceEEEeecC--------------CCCeEEEEE----------E---EEeeccCCeEEEEE
Q 003360 321 -------------------NSFLSFTGSK--------------KGNSHIIHS----------V---KVMKINGSIISLNM 354 (826)
Q Consensus 321 -------------------~~~~~i~~s~--------------~~~~~~~~~----------~---~~~~~~~~V~~l~~ 354 (826)
..+..+++.. +......|. + ++.+....+++++.
T Consensus 377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v 456 (910)
T KOG1539|consen 377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV 456 (910)
T ss_pred ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE
Confidence 0111111110 111111111 0 01112356999999
Q ss_pred ccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 355 NRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 355 s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
++.|++.++|+..|+|-++++.+|-...++.-...|..+|+.++.... ++.+++++.+|.+++||..+..++.+
T Consensus 457 s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~------n~~~vsa~~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 457 SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT------NRLLVSAGADGILKFWDFKKKVLKKS 530 (910)
T ss_pred eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC------CceEEEccCcceEEEEecCCcceeee
Confidence 999999999999999999999998776444323578999999999885 88999999999999999997776666
Q ss_pred eeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeec
Q 003360 435 NLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKF 514 (826)
Q Consensus 435 ~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~ 514 (826)
+... ... ..|. +....+.++++|.+-.|++|+.. .++.++..+-
T Consensus 531 l~l~--~~~--~~iv---------------------------~hr~s~l~a~~~ddf~I~vvD~~-----t~kvvR~f~g 574 (910)
T KOG1539|consen 531 LRLG--SSI--TGIV---------------------------YHRVSDLLAIALDDFSIRVVDVV-----TRKVVREFWG 574 (910)
T ss_pred eccC--CCc--ceee---------------------------eeehhhhhhhhcCceeEEEEEch-----hhhhhHHhhc
Confidence 4221 111 1111 11112356777777799999987 3333333221
Q ss_pred CCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccccccccceeecCCCCCCCcccceeccCCCcEEEEcCCeeee
Q 003360 515 HSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAF 594 (826)
Q Consensus 515 ~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e~~ 594 (826)
+ .-......-++.+.+|+.+..|+.|++|.+|....|-.. .+. .--..+++|+|||.++..--.+..
T Consensus 575 h--~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-----~vd------~~~~sls~SPngD~LAT~Hvd~~g 641 (910)
T KOG1539|consen 575 H--GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-----LVD------SPCTSLSFSPNGDFLATVHVDQNG 641 (910)
T ss_pred c--ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-----ecC------CcceeeEECCCCCEEEEEEecCce
Confidence 1 000111111278999999999999999999988776553 221 223566778888887776655544
Q ss_pred eeeecccCCcccc--CCCccccCCCCcCcc
Q 003360 595 FISALRQRDFFRF--LDSACQVYSYDPTLL 622 (826)
Q Consensus 595 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 622 (826)
+ .+|+....|.. ..+++..|.|..+..
T Consensus 642 I-ylWsNkslF~~vs~r~~~~~~~~~~v~l 670 (910)
T KOG1539|consen 642 I-YLWSNKSLFKSVSTRAIPADYVPSWVML 670 (910)
T ss_pred E-EEEEchhHheeccccccCcccccceeec
Confidence 4 66776654432 236666676554333
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=9.3e-21 Score=193.75 Aligned_cols=278 Identities=15% Similarity=0.102 Sum_probs=203.2
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC---eEEEec-CCcEEEecc
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS---FILSSA-DEDYSLLAK 220 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~---~l~~~~-d~~i~~w~~ 220 (826)
...++.++=+|.+.+||...- ....+.+|.++|..+++.-..+ .+++++ |.++++|..
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk------------------~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGK------------------SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred CceEEEeecCCeeEEEecCCc------------------eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 455677778899999998661 3455789999999777644333 377787 999999954
Q ss_pred CCCceee--c--ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecc---------------ccccccc
Q 003360 221 SVPPLLD--F--ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK---------------QQSEKDF 279 (826)
Q Consensus 221 ~~~~~~~--~--~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~---------------~~~~~~~ 279 (826)
..+.... . ..+|+++|-+ ..+++..+++|+.|.+|+||+.....-..+-... ......+
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 4322111 1 3489999999 7899999999999999999994111100000000 0112235
Q ss_pred ccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC
Q 003360 280 SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ 359 (826)
Q Consensus 280 ~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 359 (826)
.+|..+|.+|.|++ ...+++++.|.+|+.||+.++.. ......+...+|+..+|...
T Consensus 257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~----------------------~~~~~~~ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL----------------------KSTLTTNKSLNCISYSPLSK 313 (423)
T ss_pred cccccceeeEEEcC-CCceEeecccceEEEEEeecccc----------------------eeeeecCcceeEeecccccc
Confidence 78999999999998 77899999999999999996644 22333466799999999999
Q ss_pred EEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc-eEEeeecc
Q 003360 360 HLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN-MLSTNLIH 438 (826)
Q Consensus 360 ~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~-~i~~~~~~ 438 (826)
+||+|+.|..+++||.+++.--.......+|...|.++.|+|. +..+|++|+.|+++++||.++.+ .+..+..|
T Consensus 314 Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~-----~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 314 LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT-----NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC-----CceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 9999999999999999876433223444689999999999996 57789999999999999999877 77665555
Q ss_pred CCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 439 PKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 439 ~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
..++++....+ ...++..+.|+.+|||.-.
T Consensus 389 ---~DKvl~vdW~~----------------------------~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 389 ---NDKVLSVDWNE----------------------------GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ---CceEEEEeccC----------------------------CceEEeccCcceEEEeccc
Confidence 34555554332 2245555567799998654
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.88 E-value=1.3e-20 Score=187.40 Aligned_cols=287 Identities=16% Similarity=0.206 Sum_probs=202.6
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceE
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 90 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~l 90 (826)
.++.+|....+ +|+|+.||+|..|-.|++|++... +.+..++ +.|...|.-++|.. ++
T Consensus 45 gh~geI~~~~F-~P~gs~~aSgG~Dr~I~LWnv~gd-----------ceN~~~l----kgHsgAVM~l~~~~----d~-- 102 (338)
T KOG0265|consen 45 GHKGEIYTIKF-HPDGSCFASGGSDRAIVLWNVYGD-----------CENFWVL----KGHSGAVMELHGMR----DG-- 102 (338)
T ss_pred CCcceEEEEEE-CCCCCeEeecCCcceEEEEecccc-----------ccceeee----ccccceeEeeeecc----CC--
Confidence 46789999998 479999999999999999986652 1111111 13444566555543 22
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHh
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~ 170 (826)
..++..+.+..++.||..+
T Consensus 103 -------------------------------------------------------s~i~S~gtDk~v~~wD~~t------ 121 (338)
T KOG0265|consen 103 -------------------------------------------------------SHILSCGTDKTVRGWDAET------ 121 (338)
T ss_pred -------------------------------------------------------CEEEEecCCceEEEEeccc------
Confidence 2234444455666777655
Q ss_pred hccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEE-ec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEE
Q 003360 171 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS-SA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLF 246 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~-~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l 246 (826)
.+ .......|...|+.+.-..-|..++. ++ |+++++|+.+....... ...+-.+++ |...+.-+
T Consensus 122 -G~----------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t-~~~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 122 -GK----------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT-FENKYQLTAVGFKDTSDQV 189 (338)
T ss_pred -ce----------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc-cccceeEEEEEecccccce
Confidence 11 22335678888888886666666665 55 99999997664332222 122334555 88888999
Q ss_pred EEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEE
Q 003360 247 ITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 247 ~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
++|+-|+.|++||+..... ++.+ .+|.++|+.|+.+|++..+.+-+.|.+|++||++.-..
T Consensus 190 ~sggIdn~ikvWd~r~~d~--~~~l--------sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p--------- 250 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKNDG--LYTL--------SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP--------- 250 (338)
T ss_pred eeccccCceeeeccccCcc--eEEe--------ecccCceeeEEeccCCCccccccccceEEEEEecccCC---------
Confidence 9999999999999943331 2334 48889999999999999999999999999999983211
Q ss_pred eecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCC
Q 003360 327 TGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQG 406 (826)
Q Consensus 327 ~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~ 406 (826)
...++.+..-............+|+|+++.+..|+.|..|++||.....++|... +|.+.|.++.|.|.
T Consensus 251 ----~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp---Gh~gsvn~~~Fhp~---- 319 (338)
T KOG0265|consen 251 ----SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP---GHYGSVNEVDFHPT---- 319 (338)
T ss_pred ----CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC---CcceeEEEeeecCC----
Confidence 1122211000000012235667899999999999999999999999989987664 89999999999995
Q ss_pred CCCcEEEEEECCCcEEEE
Q 003360 407 FEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 407 ~d~~~l~sgs~Dg~V~iw 424 (826)
.++|.+++.|.+|++=
T Consensus 320 --e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 320 --EPIILSCSSDKTIYLG 335 (338)
T ss_pred --CcEEEEeccCceeEee
Confidence 8999999999999873
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.5e-21 Score=199.23 Aligned_cols=242 Identities=12% Similarity=0.128 Sum_probs=184.1
Q ss_pred ccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC----CceeecccccCCccee--eCCCCCEEEEEECCCc
Q 003360 182 KEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV----PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGA 254 (826)
Q Consensus 182 ~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~----~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGt 254 (826)
.+.-..+..|...|..+.|+++|++||+++ |.+..+|.... ....++ .+|..+|.. |+||.++|++|+.|..
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCCCCeEEecCchHh
Confidence 334445788999999999999999999999 99999994321 123333 689999988 9999999999999999
Q ss_pred EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC-----ccccceEEEeec
Q 003360 255 INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH-----AIENSFLSFTGS 329 (826)
Q Consensus 255 VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~-----~~~~~~~~i~~s 329 (826)
+++||+.++... ..+. ..++..+++.+|+||+..+++|+.|+++..||+..+.. .....+..++.+
T Consensus 293 ~~lwDv~tgd~~----~~y~-----~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait 363 (519)
T KOG0293|consen 293 LSLWDVDTGDLR----HLYP-----SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAIT 363 (519)
T ss_pred eeeccCCcchhh----hhcc-----cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEc
Confidence 999999444421 1111 23568999999999999999999999999999987722 112346677777
Q ss_pred CCCCeEEEEE---------------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCC--C
Q 003360 330 KKGNSHIIHS---------------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS--S 392 (826)
Q Consensus 330 ~~~~~~~~~~---------------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~--~ 392 (826)
.||+...+-. ......+.+|+++++|.+++++++.-.+..+++||+....++... .+|. .
T Consensus 364 ~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY---~Ghkq~~ 440 (519)
T KOG0293|consen 364 YDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY---FGHKQGH 440 (519)
T ss_pred CCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh---hcccccc
Confidence 7776533211 112223678999999999999999999999999999977666222 2332 2
Q ss_pred CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
-+..-+|.-. +..++++|+.|+.|+||+..+|+++.++.+|...
T Consensus 441 fiIrSCFgg~-----~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~ 484 (519)
T KOG0293|consen 441 FIIRSCFGGG-----NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT 484 (519)
T ss_pred eEEEeccCCC-----CcceEEecCCCceEEEEEccCCceeEeecCCcce
Confidence 3444456543 5789999999999999999999999999888743
No 53
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=3.6e-21 Score=203.04 Aligned_cols=307 Identities=15% Similarity=0.191 Sum_probs=208.6
Q ss_pred ccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCC
Q 003360 8 SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKA 87 (826)
Q Consensus 8 ~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~ 87 (826)
++.++.|-|++|+. .|.|..|++|+-|.+|++||+......-..+ ..+ -..+..+|..+.|.. .+
T Consensus 162 ~l~hgtk~Vsal~~-Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~f--------r~l---~P~E~h~i~sl~ys~---Tg 226 (641)
T KOG0772|consen 162 QLKHGTKIVSALAV-DPSGARFVSGSLDYTVKFWDFQGMDASMRSF--------RQL---QPCETHQINSLQYSV---TG 226 (641)
T ss_pred eccCCceEEEEeee-cCCCceeeeccccceEEEEecccccccchhh--------hcc---CcccccccceeeecC---CC
Confidence 45566888999997 6899999999999999999998751111000 011 112355788888864 23
Q ss_pred ceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 88 SRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 88 g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
+.+++..|... ...++ ++...++-+..|.-|+.|...
T Consensus 227 ~~iLvvsg~aq-------akl~D---------------------------------RdG~~~~e~~KGDQYI~Dm~n--- 263 (641)
T KOG0772|consen 227 DQILVVSGSAQ-------AKLLD---------------------------------RDGFEIVEFSKGDQYIRDMYN--- 263 (641)
T ss_pred CeEEEEecCcc-------eeEEc---------------------------------cCCceeeeeeccchhhhhhhc---
Confidence 45555555432 11110 112223444455555544443
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCe-EEEec-CCcEEEeccCC--CceeecccccCC----cc-ee
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF-ILSSA-DEDYSLLAKSV--PPLLDFETKLKD----GS-QS 238 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~~--~~~~~~~~~h~g----~V-~~ 238 (826)
-.+|-..++|.+|+|..+. +++++ |+++|+|+... .+...++....+ .+ .|
T Consensus 264 --------------------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC 323 (641)
T KOG0772|consen 264 --------------------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC 323 (641)
T ss_pred --------------------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee
Confidence 2588899999999997754 45566 99999995432 223333221111 22 34
Q ss_pred -eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCC--CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 239 -HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG--IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 -~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~--~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
|++++++||+|..||+|++||.......+.+.++ ..|. ..|+||.|+++|++|++=+.|+++++||++.-
T Consensus 324 ~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk-------~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 324 AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK-------DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ecCCCcchhhhcccCCceeeeecCCcccccceEee-------eccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 9999999999999999999998333322333344 3465 49999999999999999999999999999843
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEec------CCeEEEEecCCCeeEEeeeccc
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSD------QGYVYLLDTEGPTVLYQKHIAS 388 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~------dG~V~vwD~~~~~~l~~~~~~~ 388 (826)
.. ++. ...+ ...-+-+.++|||+.++|++|.. .|++.+||..+...++...+.
T Consensus 397 kk----------------pL~---~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~- 456 (641)
T KOG0772|consen 397 KK----------------PLN---VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS- 456 (641)
T ss_pred cc----------------chh---hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-
Confidence 21 110 1111 11234678899999999999864 578999999999988777653
Q ss_pred CCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 389 DISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 389 ~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
...|..+.|+|. =+.|++|+.||+++||=-.
T Consensus 457 --~aSvv~~~Whpk------LNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 457 --TASVVRCLWHPK------LNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred --CceEEEEeecch------hhheeeecCCCceEEEECc
Confidence 567888999995 6779999999999887544
No 54
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=2e-20 Score=183.16 Aligned_cols=225 Identities=16% Similarity=0.242 Sum_probs=180.6
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV- 260 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~- 260 (826)
|+-|.+|+-++|.++|+.+|.+|++++ |.+..+|..-....+....+|+|.|+| ...+.+.++||++|.++++||.
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 455789999999999999999999999 999999965333444444999999999 7778899999999999999999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEEeCCCCCccccceEEEeecCCCCeE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-----SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-----dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
+++++ ..++ .+.+|..+.|++++.+++.... .+.|.+||++...... +....
T Consensus 83 tGk~l---a~~k---------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~-----------~s~ep 139 (327)
T KOG0643|consen 83 TGKQL---ATWK---------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI-----------DSEEP 139 (327)
T ss_pred CCcEE---EEee---------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh-----------cccCc
Confidence 56553 3344 3368999999999988777644 5789999998543210 11111
Q ss_pred EEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 336 IIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 336 ~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
. ++...+...++.+-|.|-+.++++|.+||.|..||++++..+ ......|+..|+.++|++ |..+++++
T Consensus 140 ~---~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~--v~s~~~h~~~Ind~q~s~------d~T~FiT~ 208 (327)
T KOG0643|consen 140 Y---LKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL--VDSDEEHSSKINDLQFSR------DRTYFITG 208 (327)
T ss_pred e---EEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee--eechhhhccccccccccC------CcceEEec
Confidence 1 445555678999999999999999999999999999998766 344457888999999999 69999999
Q ss_pred ECCCcEEEEECCCCceEEeeeccCCCCC
Q 003360 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPS 443 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i~~~~~~~~~~~ 443 (826)
+.|.+-++||..+-.++.++....+.+.
T Consensus 209 s~Dttakl~D~~tl~v~Kty~te~PvN~ 236 (327)
T KOG0643|consen 209 SKDTTAKLVDVRTLEVLKTYTTERPVNT 236 (327)
T ss_pred ccCccceeeeccceeeEEEeeecccccc
Confidence 9999999999999999999865544433
No 55
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=6.3e-20 Score=199.59 Aligned_cols=529 Identities=14% Similarity=0.154 Sum_probs=293.9
Q ss_pred ccccceEEEecCCCCCEEEEEE--ecCcEEEEeCCCcccccccc------ccccccccccccCC-CCCCcCCeEEEEEee
Q 003360 12 ETKQVTSACWACPIGSKVAVGY--SNGEILIWGVPSILNLKTEE------CGTQITPICKLNLG-YKLDKIPISSLKWVY 82 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~--~DGsI~iWd~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~pI~~l~W~~ 82 (826)
..|.++|+++ +|+|+++|||- -.-.+++|++.....-.... .+....|-.++-.+ ...|.+-|....|-.
T Consensus 77 sRk~~t~vAf-S~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~ 155 (1080)
T KOG1408|consen 77 SRKPLTCVAF-SQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRV 155 (1080)
T ss_pred cCcceeEEEE-cCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhh
Confidence 4789999998 78999999997 67789999998762110001 11111222222211 123333344445522
Q ss_pred ----------------eCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecC----CCceeeEEEecCCCCCCC
Q 003360 83 ----------------ADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPL----SEPCIDMEIISSSSDPNK 142 (826)
Q Consensus 83 ----------------~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~----~~~~~d~~~l~~~~~~~~ 142 (826)
.-.++|..|+..|.-. +..|.++....+.. .++|+- -+...+..++.-.+..+.
T Consensus 156 N~~~asnkiss~Vsav~fsEdgSYfvT~gnrH-----vk~wyl~~~~Kykd-piPl~gRs~~lg~lr~n~f~avaCg~gi 229 (1080)
T KOG1408|consen 156 NSSGASNKISSVVSAVAFSEDGSYFVTSGNRH-----VKLWYLQIQSKYKD-PIPLPGRSYFLGNLRFNEFLAVACGVGI 229 (1080)
T ss_pred cccccccccceeEEEEEEccCCceeeeeeeee-----EEEEEeeccccccC-CccccchhhhccccccchhhhhhhcCcc
Confidence 1123444455444322 33444433332111 112211 122222222221111121
Q ss_pred CCCceEEEeccCccEEEecchhH-HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc
Q 003360 143 PKQDSFLLLGKSGHFYAFDDCQI-ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK 220 (826)
Q Consensus 143 ~~~~~liv~~~~G~l~~~d~~~i-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~ 220 (826)
.. ..-++.+..|.|+-|....+ .++... . .....|++. ..++++.|. +++|++|+.
T Consensus 230 cA-estfait~qGhLvEFSsRRLLDKWVqc-----------------R--TTnAnCIcV--s~r~I~cgCa~g~vrlFnp 287 (1080)
T KOG1408|consen 230 CA-ESTFAITAQGHLVEFSSRRLLDKWVQC-----------------R--TTNANCICV--SSRLIACGCAKGMVRLFNP 287 (1080)
T ss_pred cc-cceEEEecccceeeechhhhhhhhhhh-----------------h--ccccceeee--ecceEEEeeccceeeecCc
Confidence 22 23477888999988876653 222200 0 112234444 457888877 999999964
Q ss_pred CCCcee-ecccc--------------c----------CCccee-eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccc
Q 003360 221 SVPPLL-DFETK--------------L----------KDGSQS-HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQ 274 (826)
Q Consensus 221 ~~~~~~-~~~~~--------------h----------~g~V~~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~ 274 (826)
..-.+. ++..+ | ...|.+ |++....|.....|.++.|||+..... + -+
T Consensus 288 ~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k-v---gk-- 361 (1080)
T KOG1408|consen 288 ETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK-V---GK-- 361 (1080)
T ss_pred chhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc-c---cc--
Confidence 321111 11111 1 122233 888899999999999999999943221 0 00
Q ss_pred cccccccCCCCeEEEEEeCC-----------CCEEEEEeCCCcEEEEEeCCCCCc---ccc----ceEEEeecCCCCeEE
Q 003360 275 SEKDFSLSGIPLTALYYDGT-----------SRVLVSGDQSGMVRIFKLKYEPHA---IEN----SFLSFTGSKKGNSHI 336 (826)
Q Consensus 275 ~~~~~~~h~~~V~~l~fsp~-----------~~~Lasgs~dg~V~iwd~~~~~~~---~~~----~~~~i~~s~~~~~~~ 336 (826)
...+-.|...|+.|.--|- -..|++++.|++||+|++...... +.+ ....+.+..+..+ .
T Consensus 362 -~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q-~ 439 (1080)
T KOG1408|consen 362 -CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ-I 439 (1080)
T ss_pred -eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh-h
Confidence 1112235555555554331 135899999999999999863110 000 0111111111111 0
Q ss_pred EEE----------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCC
Q 003360 337 IHS----------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQG 406 (826)
Q Consensus 337 ~~~----------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~ 406 (826)
++. .......-.+.+++.||+|++||+|...|+++|+|+.....+..+ ..|.+.|.++.|+.. .
T Consensus 440 ~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~---eAHesEilcLeyS~p---~ 513 (1080)
T KOG1408|consen 440 MHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM---EAHESEILCLEYSFP---V 513 (1080)
T ss_pred hhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe---ecccceeEEEeecCc---h
Confidence 000 111222445999999999999999999999999999887666333 479999999999873 1
Q ss_pred CCCcEEEEEECCCcEEEEECCCCc-eEEeeeccCCCCCcceEEEEecCC---CCcccCcccccccccc----CCCCCC--
Q 003360 407 FEKNFLVIATKDSSVLVLDSDNGN-MLSTNLIHPKKPSRALFMQILNGQ---DGLARGANLSNVAGMN----KGSPKE-- 476 (826)
Q Consensus 407 ~d~~~l~sgs~Dg~V~iwd~~tg~-~i~~~~~~~~~~~~~lsi~~l~~~---~~~~~~~~~~~~~~~~----~~~~~~-- 476 (826)
....+|++++.|.-|.|||....- +++++-.|. +.+.++.+.-.+ ..+.++++...+-... .+....
T Consensus 514 ~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS---ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~ 590 (1080)
T KOG1408|consen 514 LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS---SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH 590 (1080)
T ss_pred hhhHhhhhccCCceEEEEecccccchhhhhcccc---cceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc
Confidence 125789999999999999987432 344433332 333344333211 1124455433222111 111100
Q ss_pred ------------CCCCC-CCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeee---CCceEEEEEEeec
Q 003360 477 ------------NAVPK-QWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS---GSDVGLMLLFTSG 540 (826)
Q Consensus 477 ------------~~~~~-~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~---~~~~~lv~~~~~G 540 (826)
...+. ...+.+|-|+.||||++.+ .|..+..|-. .-.-...++. +.+..+++-+.|-
T Consensus 591 t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s-----gKq~k~FKgs--~~~eG~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 591 TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES-----GKQVKSFKGS--RDHEGDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred ccccccceEEEeeeCCCcceEEEEecccceEEEeccc-----cceeeeeccc--ccCCCceEEEEECCCccEEEEeecCC
Confidence 11223 4566778888999999984 2222211111 0000111222 6778888889999
Q ss_pred eEEEeccCCcccccccc-----ccceeecCCCCCCCcccceeccCCCcEEEEcCCeeeeeeeec
Q 003360 541 KFEIRSLPELSLLKETS-----IRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFISAL 599 (826)
Q Consensus 541 ~I~i~slP~L~~l~~~s-----l~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e~~~~~~~ 599 (826)
.+.++.+-+.+-++... +.++-|. .+-...|+++.||-|++|--|.++.+ +..
T Consensus 664 tl~~~Df~sgEcvA~m~GHsE~VTG~kF~-----nDCkHlISvsgDgCIFvW~lp~~mii-~m~ 721 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQMTGHSEAVTGVKFL-----NDCKHLISVSGDGCIFVWKLPLTMII-RMV 721 (1080)
T ss_pred ceEEEEeccchhhhhhcCcchheeeeeec-----ccchhheeecCCceEEEEECchhHhH-HHH
Confidence 99999988888777642 2366777 57789999999999999999888554 443
No 56
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.87 E-value=1.2e-21 Score=205.95 Aligned_cols=289 Identities=14% Similarity=0.183 Sum_probs=211.8
Q ss_pred ccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCc-cccccccccccccccccccCCCCCCcCCeEEEEEeeeC
Q 003360 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI-LNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYAD 84 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~ 84 (826)
.-+.+.|.+.|+++-|..-.|.+|++|+.||.|.|||+.+. ... ..+..|..||..+.|..
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l----------------rtf~gH~k~Vrd~~~s~-- 268 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL----------------RTFKGHRKPVRDASFNN-- 268 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee----------------hhhhcchhhhhhhhccc--
Confidence 34567789999999997559999999999999999998873 111 13456777888888865
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchh
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~ 164 (826)
.|+-|+++|- ++.|.+||..+
T Consensus 269 --~g~~fLS~sf---------------------------------------------------------D~~lKlwDtET 289 (503)
T KOG0282|consen 269 --CGTSFLSASF---------------------------------------------------------DRFLKLWDTET 289 (503)
T ss_pred --cCCeeeeeec---------------------------------------------------------ceeeeeecccc
Confidence 2333333332 23445666554
Q ss_pred HHHHHhhccCCCCCCCCccceeeecccC-CCEEEEEEeeCCCe-EEEec-CCcEEEeccCCCceeecccccCCccee--e
Q 003360 165 IERYLLQYQSRSPPSAPKEVMLKMPFLD-SSITAMKLITGNSF-ILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--H 239 (826)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~ 239 (826)
. .....+|. ..++|++|.|++.. +++|+ |+.|+.|+.+.+.+..-...|-+.|.. |
T Consensus 290 -------G------------~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 290 -------G------------QVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF 350 (503)
T ss_pred -------c------------eEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence 0 11122333 45789999999944 44555 999999988876655544668889988 9
Q ss_pred CCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 240 SKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 240 s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
-++++.+++.+.|++|+||+...+.. +++.. ....| ...||..+|++.+++.-+.|..+.+|.....-..+
T Consensus 351 ~~~g~rFissSDdks~riWe~~~~v~-----ik~i~--~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 351 VDEGRRFISSSDDKSVRIWENRIPVP-----IKNIA--DPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred ccCCceEeeeccCccEEEEEcCCCcc-----chhhc--chhhc--cCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 99999999999999999999965542 22211 11233 66799999999999999999999999865221100
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeec--cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEE
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKI--NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSL 397 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~--~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl 397 (826)
+. -++..| .|.-+.+.|||||.+|++|+.||.|.+||.++-+++... ..|..+++.+
T Consensus 422 ----------kk--------K~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l---kah~~~ci~v 480 (503)
T KOG0282|consen 422 ----------KK--------KRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL---KAHDQPCIGV 480 (503)
T ss_pred ----------Hh--------hhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc---ccCCcceEEE
Confidence 00 111112 455788999999999999999999999999998877433 4678899999
Q ss_pred EEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 398 QFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 398 ~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
.|.|. ....+++|+.||.|++|+
T Consensus 481 ~wHP~-----e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 481 DWHPV-----EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EecCC-----CcceeEecccCceeEecC
Confidence 99996 578899999999999996
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.5e-21 Score=214.06 Aligned_cols=255 Identities=15% Similarity=0.141 Sum_probs=185.5
Q ss_pred ccCCccee--eCCCCCEEEEEECCCcEEEEeCCC-Cce--------------------ee--------------------
Q 003360 231 KLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC-PLF--------------------LL-------------------- 267 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~-~~~--------------------~~-------------------- 267 (826)
.|+|.|++ |+++|+|||||++||.||||.+.. +.. .+
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 79999999 999999999999999999998732 000 00
Q ss_pred ---------eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 268 ---------ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 268 ---------i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
...+.......+.+|.+.|..|+|+.+ .+|++++.|.+||||++....+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C--------------------- 402 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC--------------------- 402 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcce---------------------
Confidence 000000112246788899999999976 5899999999999999986555
Q ss_pred EEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 339 SVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
++...|+..|||++|+| |.+++++|+-||.||||++...++++-.. ...-|++++|.| ||+..++|+-
T Consensus 403 -L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D----l~~lITAvcy~P------dGk~avIGt~ 471 (712)
T KOG0283|consen 403 -LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND----LRDLITAVCYSP------DGKGAVIGTF 471 (712)
T ss_pred -eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh----hhhhheeEEecc------CCceEEEEEe
Confidence 88888999999999999 67899999999999999999999884333 336899999999 7999999999
Q ss_pred CCcEEEEECCCCceEEeeeccCCC-----CCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCc
Q 003360 418 DSSVLVLDSDNGNMLSTNLIHPKK-----PSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKA 492 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~~~~-----~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~ 492 (826)
+|.+++|+...-++.....++... ..++..+++.. ...+.++|.+.|..
T Consensus 472 ~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p--------------------------~~~~~vLVTSnDSr 525 (712)
T KOG0283|consen 472 NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFP--------------------------GDPDEVLVTSNDSR 525 (712)
T ss_pred ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecC--------------------------CCCCeEEEecCCCc
Confidence 999999999977766654333221 11233333331 11124777888889
Q ss_pred EEEEeccccccccceeeeeeecCCCCcee-eEeeeeCCceEEEEEEeeceEEEeccCCc
Q 003360 493 ACAYSLSHAVQGVKKVLYKKKFHSSSCCW-ASTFYSGSDVGLMLLFTSGKFEIRSLPEL 550 (826)
Q Consensus 493 irv~sl~~~~~g~~k~~~k~~~~~~~c~~-~~~~~~~~~~~lv~~~~~G~I~i~slP~L 550 (826)
||||++. ..+.+.|.|-....+.. .+-+. .++.-+|+...|-.|-||.++..
T Consensus 526 IRI~d~~-----~~~lv~KfKG~~n~~SQ~~Asfs-~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 526 IRIYDGR-----DKDLVHKFKGFRNTSSQISASFS-SDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred eEEEecc-----chhhhhhhcccccCCcceeeeEc-cCCCEEEEeecCceEEEEeCCCC
Confidence 9999995 33445554422122211 11111 47888889999999999987643
No 58
>PTZ00421 coronin; Provisional
Probab=99.87 E-value=6.3e-19 Score=200.05 Aligned_cols=292 Identities=12% Similarity=0.084 Sum_probs=188.5
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccc-----ccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEe
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQ-----QSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFKL 312 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~-----~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~ 312 (826)
.++++..+++++.+..+..|+..+... +..+.. .....+.+|...|++++|+| ++.+|++|+.||+|++||+
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~--v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTA--VLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI 105 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceE--EeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence 566777788888888888998855432 111111 01123567889999999999 7889999999999999999
Q ss_pred CCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeEEeeecccCCC
Q 003360 313 KYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS 391 (826)
Q Consensus 313 ~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~ 391 (826)
..+.... ...... ..+..|...|.+++|+|++ .+|++|+.||+|+|||+.+++.+... ..|.
T Consensus 106 ~~~~~~~----------~~~~~l----~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l---~~h~ 168 (493)
T PTZ00421 106 PEEGLTQ----------NISDPI----VHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI---KCHS 168 (493)
T ss_pred CCCcccc----------ccCcce----EEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE---cCCC
Confidence 7542110 000111 3345577889999999985 68999999999999999998877444 3688
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccC
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNK 471 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~ 471 (826)
..|.+++|++ ++.+|++++.|++|++||+++++.+.++..|..... ....
T Consensus 169 ~~V~sla~sp------dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~--~~~~---------------------- 218 (493)
T PTZ00421 169 DQITSLEWNL------DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKS--QRCL---------------------- 218 (493)
T ss_pred CceEEEEEEC------CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcc--eEEE----------------------
Confidence 8999999999 699999999999999999999998887655543211 1111
Q ss_pred CCCCCCCCCCCCEEEEe-----ecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEE-eeceEEEe
Q 003360 472 GSPKENAVPKQWFVLLC-----SEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLF-TSGKFEIR 545 (826)
Q Consensus 472 ~~~~~~~~~~~~~vv~~-----se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~-~~G~I~i~ 545 (826)
|.+.+.+++++ .++.|+||++... .+.+...... ..+.....+....+..|++.. .+|.|++|
T Consensus 219 ------w~~~~~~ivt~G~s~s~Dr~VklWDlr~~----~~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriw 287 (493)
T PTZ00421 219 ------WAKRKDLIITLGCSKSQQRQIMLWDTRKM----ASPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCF 287 (493)
T ss_pred ------EcCCCCeEEEEecCCCCCCeEEEEeCCCC----CCceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEE
Confidence 11222344443 2578999999732 1233222222 111111222223444454444 59999999
Q ss_pred ccCCccccccccccceeecCCCCCCCcccceeccCCCcEEEEcCCeeeeeeeeccc
Q 003360 546 SLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFISALRQ 601 (826)
Q Consensus 546 slP~L~~l~~~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e~~~~~~~~~ 601 (826)
.+.+.+++... .|.. ....+-+|+.+ ...+=...+|++++.-+..
T Consensus 288 dl~~~~~~~~~-----~~~s----~~~~~g~~~~p--k~~~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 288 ELMNERLTFCS-----SYSS----VEPHKGLCMMP--KWSLDTRKCEIARFYALTY 332 (493)
T ss_pred EeeCCceEEEe-----eccC----CCCCcceEecc--cccccccceeeeEEEEecC
Confidence 99887765542 2220 12234444443 2222334577776555443
No 59
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.87 E-value=1.3e-20 Score=190.78 Aligned_cols=231 Identities=14% Similarity=0.212 Sum_probs=194.9
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
+..++.++.++.+-+||..+ .....++++|-..|..+++++-.+++++++ |+.|+.|+....
T Consensus 163 n~wf~tgs~DrtikIwDlat-----------------g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLAT-----------------GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred ceeEEecCCCceeEEEEccc-----------------CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence 46677888899999999987 235678899999999999999999999999 999999987765
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
.+..-..+|-.+|.| .+|.-+.|+||+.|.++||||+..+.. +.. +.+|..+|..|.+.|....+++|
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~--V~~--------l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS--VHV--------LSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce--EEE--------ecCCCCcceeEEeecCCCceEEe
Confidence 555545899999999 899999999999999999999965542 233 35899999999999999999999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
+.|++|++||++.+... .....|+..|.+++.+|....+|+++.|. |+-|++..+..+
T Consensus 296 S~D~tvrlWDl~agkt~---------------------~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~ 353 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTM---------------------ITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFL 353 (460)
T ss_pred cCCceEEEeeeccCcee---------------------EeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchh
Confidence 99999999999955331 33344567799999999999999999995 799999998877
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.. .++|..-|.++.... ..++++|+..|.+.+||.++|-..+.
T Consensus 354 ~n---lsgh~~iintl~~ns-------D~v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 354 QN---LSGHNAIINTLSVNS-------DGVLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred hc---cccccceeeeeeecc-------CceEEEcCCceEEEEEecCcCccccc
Confidence 44 468888888888765 78999999999999999998865544
No 60
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=5.9e-20 Score=201.69 Aligned_cols=330 Identities=17% Similarity=0.191 Sum_probs=241.1
Q ss_pred cccceEEEecCCCCC-EEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEE
Q 003360 13 TKQVTSACWACPIGS-KVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLY 91 (826)
Q Consensus 13 ~~~i~slcW~~p~g~-~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ll 91 (826)
..+|.+..|..-.+. .-++--.++++.++.++.. ... . ..|...-++.-..|+..|..+..+. +..++
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s--~~~---~--p~~~~~~~i~~~GHR~dVRsl~vS~----d~~~~ 388 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS--GKT---S--PEADRTSNIEIGGHRSDVRSLCVSS----DSILL 388 (888)
T ss_pred hhheeEEEEEecCCcceeEEEeecCceEEEEeccC--CCC---C--ccccccceeeeccchhheeEEEeec----Cceee
Confidence 457889999853332 2444589999999988762 111 0 1122222234456777888887765 33444
Q ss_pred EEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhh
Q 003360 92 IMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQ 171 (826)
Q Consensus 92 i~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~ 171 (826)
.+|+. +.+.+|..+.....|++... . .++.... +.+.+++++...|.|.+||..+..
T Consensus 389 ~Sga~-----~SikiWn~~t~kciRTi~~~-----y-----~l~~~Fv---pgd~~Iv~G~k~Gel~vfdlaS~~----- 445 (888)
T KOG0306|consen 389 ASGAG-----ESIKIWNRDTLKCIRTITCG-----Y-----ILASKFV---PGDRYIVLGTKNGELQVFDLASAS----- 445 (888)
T ss_pred eecCC-----CcEEEEEccCcceeEEeccc-----c-----EEEEEec---CCCceEEEeccCCceEEEEeehhh-----
Confidence 44433 35677777766655554221 1 1222222 234788999999999999998732
Q ss_pred ccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-------C-ceeec----ccccCCccee
Q 003360 172 YQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-------P-PLLDF----ETKLKDGSQS 238 (826)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-------~-~~~~~----~~~h~g~V~~ 238 (826)
..-.++.|++.|+.++.+||+..+++|+ |.+|++|+-.. + ....+ .-.....|.|
T Consensus 446 ------------l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~ 513 (888)
T KOG0306|consen 446 ------------LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLC 513 (888)
T ss_pred ------------hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEE
Confidence 1223579999999999999999999999 99999994221 0 11111 1224667777
Q ss_pred --eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 239 --HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 --~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
++||+++|+++--|.+|+||-+..-.+ . +. +-+|.-||.||..+||+.++++||.|..|+||-+.-+.
T Consensus 514 v~~Spdgk~LaVsLLdnTVkVyflDtlKF--f--ls------LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD 583 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKF--F--LS------LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD 583 (888)
T ss_pred EEEcCCCcEEEEEeccCeEEEEEecceee--e--ee------ecccccceeEEeccCCcCeEEeccCCCceEEeccccch
Confidence 999999999999999999999843221 0 11 23788999999999999999999999999999998554
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeE
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 396 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~s 396 (826)
| | -.+..|...|.++.|-|....+.+++.||.|+-||-....++... .+|...|++
T Consensus 584 C-----------------H----KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L---~~H~~ev~c 639 (888)
T KOG0306|consen 584 C-----------------H----KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL---DGHHSEVWC 639 (888)
T ss_pred h-----------------h----hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee---ccchheeee
Confidence 4 2 345567888999999999999999999999999999888887444 589999999
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
++..| +|.++++++.|.+|++|....
T Consensus 640 Lav~~------~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 640 LAVSP------NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eEEcC------CCCeEEeccCCceeEeeeccC
Confidence 99999 499999999999999999663
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.87 E-value=2.5e-21 Score=203.62 Aligned_cols=281 Identities=13% Similarity=0.196 Sum_probs=203.7
Q ss_pred cccCCccee--eCC-CCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC
Q 003360 230 TKLKDGSQS--HSK-VKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG 305 (826)
Q Consensus 230 ~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg 305 (826)
.+|+.+|++ |.| .+.+|++|+.|+.|+||++ ..+.. ...+.+|..+|..++|+.++..|++++.|+
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~----------lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC----------LRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce----------ehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 679999999 777 8999999999999999999 32221 335678999999999999999999999999
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeEEee
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
.|++||.+++.+ .........++|+.|+|++ +.+++|..|+.|+-||+++++++
T Consensus 281 ~lKlwDtETG~~----------------------~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv--- 335 (503)
T KOG0282|consen 281 FLKLWDTETGQV----------------------LSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV--- 335 (503)
T ss_pred eeeeeccccceE----------------------EEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH---
Confidence 999999997654 3333445678999999998 88999999999999999999987
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccc
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLS 464 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~ 464 (826)
+....|-++|..+.|.+ ++..+++.+.|++++||+.+.+-.+....-.. ..+|-++
T Consensus 336 qeYd~hLg~i~~i~F~~------~g~rFissSDdks~riWe~~~~v~ik~i~~~~-----~hsmP~~------------- 391 (503)
T KOG0282|consen 336 QEYDRHLGAILDITFVD------EGRRFISSSDDKSVRIWENRIPVPIKNIADPE-----MHTMPCL------------- 391 (503)
T ss_pred HHHHhhhhheeeeEEcc------CCceEeeeccCccEEEEEcCCCccchhhcchh-----hccCcce-------------
Confidence 44457889999999999 59999999999999999998765554321111 1111111
Q ss_pred ccccccCCCCCCCCCCCC-CEEEEeecCcEEEEeccccccccceee-eeeecCCCCceeeEeeeeCCceEEEEEEeeceE
Q 003360 465 NVAGMNKGSPKENAVPKQ-WFVLLCSEKAACAYSLSHAVQGVKKVL-YKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKF 542 (826)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~-~~vv~~se~~irv~sl~~~~~g~~k~~-~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I 542 (826)
..+|.+ .++.-+-++.+.+|++....+-+.+-. ..+.. .+|.+. +--++.+.-|+..-++|.+
T Consensus 392 ------------~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v--aGys~~-v~fSpDG~~l~SGdsdG~v 456 (503)
T KOG0282|consen 392 ------------TLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV--AGYSCQ-VDFSPDGRTLCSGDSDGKV 456 (503)
T ss_pred ------------ecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec--cCceee-EEEcCCCCeEEeecCCccE
Confidence 012222 333345577888998764333232222 22221 122111 1112677777788888888
Q ss_pred EEeccCCcccccccccc-----ceeecCCCCCCCcccceeccCCCcEEEEc
Q 003360 543 EIRSLPELSLLKETSIR-----GFVYLTPKPNSLSNTLMCSSWDGELIMVN 588 (826)
Q Consensus 543 ~i~slP~L~~l~~~sl~-----~~~~~~~~~~~~~~~~~~~s~~G~i~~~~ 588 (826)
-+|..-.-+++...+.. .++|+| -...+.++++.||+|.+|.
T Consensus 457 ~~wdwkt~kl~~~lkah~~~ci~v~wHP----~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 457 NFWDWKTTKLVSKLKAHDQPCIGVDWHP----VEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEeechhhhhhhccccCCcceEEEEecC----CCcceeEecccCceeEecC
Confidence 88877666666655433 568886 4556899999999999984
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.86 E-value=6.2e-20 Score=208.48 Aligned_cols=278 Identities=16% Similarity=0.193 Sum_probs=206.1
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec-ccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~ 262 (826)
++.+...+++..+. +.++.+++ +.++++|+......... ..+|.++|++ +...+.+|++|+.|.++|+||. ++
T Consensus 204 ~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 204 LGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 34466778888887 56667777 89999997654443333 4899999999 5556889999999999999999 44
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.. ... +.+|...|.++...+ ..+++|+.|.+|++|++..+.+ +..
T Consensus 282 ~C---~~~--------l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~----------------------l~l 326 (537)
T KOG0274|consen 282 EC---THS--------LQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGAC----------------------LNL 326 (537)
T ss_pred cE---EEE--------ecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcce----------------------EEE
Confidence 44 222 347888999988765 4788899999999999984433 333
Q ss_pred ee-ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 343 MK-INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 343 ~~-~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
.. |.++|.++..+ +.++++|+.||+|+|||+.+++++.+.. +|...|+++.+.. ...+++|+.|++|
T Consensus 327 ~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~---gH~~~V~sl~~~~-------~~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 327 LRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS---GHTGRVYSLIVDS-------ENRLLSGSLDTTI 394 (537)
T ss_pred eccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec---CCcceEEEEEecC-------cceEEeeeeccce
Confidence 33 89999999998 6689999999999999999999996654 7999999997765 2899999999999
Q ss_pred EEEECCCC-ceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEE-eecCcEEEEecc
Q 003360 422 LVLDSDNG-NMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLL-CSEKAACAYSLS 499 (826)
Q Consensus 422 ~iwd~~tg-~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~-~se~~irv~sl~ 499 (826)
++||+.++ +++.++..|..... .+.+ .+.+++. ..|+.|++|+..
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v~---~l~~------------------------------~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLVS---SLLL------------------------------RDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred EeecCCchhhhhhhhcCCccccc---cccc------------------------------ccceeEeccccccEEEeecc
Confidence 99999999 88888766654421 1111 1234444 456789999887
Q ss_pred ccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCcccccc
Q 003360 500 HAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKE 555 (826)
Q Consensus 500 ~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~ 555 (826)
...+++...-.+. +. ...+. .....+++...+|.++++.+++.+++..
T Consensus 442 -----~~~~~~~~~~~~~-~~-v~~l~-~~~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 442 -----EGECLRTLEGRHV-GG-VSALA-LGKEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred -----cCceeeeeccCCc-cc-EEEee-cCcceEEEEecCCeeEEEecccCchhhh
Confidence 3444444432100 10 11111 1247788999999999999998887775
No 63
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=1.6e-19 Score=204.90 Aligned_cols=212 Identities=13% Similarity=0.125 Sum_probs=156.3
Q ss_pred eecccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCC--------ceeecccccCCccee--eCCCC-CEEEEEECCC
Q 003360 187 KMPFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVP--------PLLDFETKLKDGSQS--HSKVK-NLFITGHSDG 253 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~--------~~~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DG 253 (826)
.+.+|...|++++|+| ++..+++++ |++|++|+.... .+..+ .+|...|.+ |+|++ ++|++|+.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 3679999999999999 788999998 999999975322 22333 679999988 99975 6999999999
Q ss_pred cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 254 AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 254 tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
+|+|||+..... +.. +..|...|++++|+|++.+|++|+.||+|+|||++++...
T Consensus 149 tVrIWDl~tg~~--~~~--------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v--------------- 203 (493)
T PTZ00421 149 VVNVWDVERGKA--VEV--------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV--------------- 203 (493)
T ss_pred EEEEEECCCCeE--EEE--------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE---------------
Confidence 999999954431 122 2467789999999999999999999999999999854321
Q ss_pred eEEEEEEEEeeccCC-eEEEEEccCCCEEEEEe----cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCC
Q 003360 334 SHIIHSVKVMKINGS-IISLNMNRNSQHLAVGS----DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~-V~~l~~s~~g~~lasGs----~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d 408 (826)
.....|.+. +..+.|.+++..+++++ .|+.|++||+++....+.... ......+....|++ +
T Consensus 204 ------~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-~d~~~~~~~~~~d~------d 270 (493)
T PTZ00421 204 ------SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD-LDQSSALFIPFFDE------D 270 (493)
T ss_pred ------EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-cCCCCceEEEEEcC------C
Confidence 122233333 45677888877666543 589999999987653322211 12233444455666 5
Q ss_pred CcEEEEEE-CCCcEEEEECCCCceEEeeec
Q 003360 409 KNFLVIAT-KDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 409 ~~~l~sgs-~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
+.+|++++ .|+.|++||+.+++++.....
T Consensus 271 ~~~L~lggkgDg~Iriwdl~~~~~~~~~~~ 300 (493)
T PTZ00421 271 TNLLYIGSKGEGNIRCFELMNERLTFCSSY 300 (493)
T ss_pred CCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence 88888887 499999999999887765433
No 64
>PTZ00420 coronin; Provisional
Probab=99.85 E-value=4.8e-19 Score=201.91 Aligned_cols=194 Identities=13% Similarity=0.162 Sum_probs=139.8
Q ss_pred CCcEEEeccCC-CceeecccccCCccee--eCCC-CCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCe
Q 003360 212 DEDYSLLAKSV-PPLLDFETKLKDGSQS--HSKV-KNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPL 286 (826)
Q Consensus 212 d~~i~~w~~~~-~~~~~~~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V 286 (826)
++.+++|+... +.+..+ .+|.+.|.+ |+|+ +++|+||+.||+|+|||+. .... ...+. .....+..|...|
T Consensus 53 ~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~--~~~i~-~p~~~L~gH~~~V 128 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES--VKEIK-DPQCILKGHKKKI 128 (568)
T ss_pred eeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc--ccccc-cceEEeecCCCcE
Confidence 67899996543 333334 789999999 9996 7899999999999999994 3221 00000 0112245788999
Q ss_pred EEEEEeCCCCE-EEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe
Q 003360 287 TALYYDGTSRV-LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS 365 (826)
Q Consensus 287 ~~l~fsp~~~~-Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs 365 (826)
++++|+|++.. |++|+.||+|+|||++++.. +....+...|++++|+++|.+|++++
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~----------------------~~~i~~~~~V~SlswspdG~lLat~s 186 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR----------------------AFQINMPKKLSSLKWNIKGNLLSGTC 186 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcE----------------------EEEEecCCcEEEEEECCCCCEEEEEe
Confidence 99999998875 57999999999999985432 12223456799999999999999999
Q ss_pred cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC----cEEEEECCC-CceEEee
Q 003360 366 DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS----SVLVLDSDN-GNMLSTN 435 (826)
Q Consensus 366 ~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg----~V~iwd~~t-g~~i~~~ 435 (826)
.|+.|+|||++++.++.+.. +|.+.+.+..+.... ...++.+|++++.|+ +|+|||+++ ++.+...
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~---gH~g~~~s~~v~~~~-fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFH---IHDGGKNTKNIWIDG-LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM 257 (568)
T ss_pred cCCEEEEEECCCCcEEEEEe---cccCCceeEEEEeee-EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence 99999999999999885543 566555443322110 011578899888774 799999984 5566553
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.4e-19 Score=190.84 Aligned_cols=197 Identities=16% Similarity=0.244 Sum_probs=158.2
Q ss_pred ecccCCCEEEEEEeeCCCeEEE-ec-CCcEEEeccCCCceeecccccCCccee--eCCC-CCEEEEEECCCcEEEEeCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILS-SA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKV-KNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~-~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s~ 262 (826)
+..|..+|..+.|+|.+..+++ |+ |+.++.|+...........+|+..|.| ++|. +.+++||+.||+||+||+..
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 4688999999999998777666 55 677888977665553335889999999 7664 56999999999999999933
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.. ..+.++. |+.+|..|.|-|.+..+|+++.. .|++||+-++... . ...
T Consensus 186 ~~-~~v~eln---------hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~ql-----------------l---~~~ 234 (487)
T KOG0310|consen 186 LT-SRVVELN---------HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQL-----------------L---TSM 234 (487)
T ss_pred CC-ceeEEec---------CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCcee-----------------h---hhh
Confidence 21 1234444 88899999999999999988665 7999999844221 0 233
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
..|+..||||++..++..|++|+-||.|+|||+.+.++++.+. ..++|.+++.+| |++.++.|..||.+.
T Consensus 235 ~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~pvLsiavs~------dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 235 FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGPVLSIAVSP------DDQTVVIGMSNGLVS 304 (487)
T ss_pred hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccceeeEEecC------CCceEEEecccceee
Confidence 3478889999999999999999999999999999999997764 567999999999 689999999999887
Q ss_pred EEE
Q 003360 423 VLD 425 (826)
Q Consensus 423 iwd 425 (826)
+-.
T Consensus 305 ~rr 307 (487)
T KOG0310|consen 305 IRR 307 (487)
T ss_pred eeh
Confidence 763
No 66
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=5.7e-20 Score=189.33 Aligned_cols=290 Identities=14% Similarity=0.132 Sum_probs=202.2
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 86 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~ 86 (826)
|.++.|.-||.=+.+ ++||++||+++.|-+..+|++.... ..++-..-..+..||.-+.|++ +
T Consensus 218 qil~~htdEVWfl~F-S~nGkyLAsaSkD~Taiiw~v~~d~-------------~~kl~~tlvgh~~~V~yi~wSP---D 280 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQF-SHNGKYLASASKDSTAIIWIVVYDV-------------HFKLKKTLVGHSQPVSYIMWSP---D 280 (519)
T ss_pred hhHhhCCCcEEEEEE-cCCCeeEeeccCCceEEEEEEecCc-------------ceeeeeeeecccCceEEEEECC---C
Confidence 445567778988887 6899999999999999999876530 0122222223556788888865 2
Q ss_pred CceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHH
Q 003360 87 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 166 (826)
Q Consensus 87 ~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~ 166 (826)
+..|+.+|-+ ..+.+||..+-+
T Consensus 281 dryLlaCg~~----------------------------------------------------------e~~~lwDv~tgd 302 (519)
T KOG0293|consen 281 DRYLLACGFD----------------------------------------------------------EVLSLWDVDTGD 302 (519)
T ss_pred CCeEEecCch----------------------------------------------------------HheeeccCCcch
Confidence 2333333332 224455544311
Q ss_pred HHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCC
Q 003360 167 RYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVK 243 (826)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~ 243 (826)
... .++ ..|.-.+++++|.||+..+++|+ |+.+..|+.........+.--.-.|.+ ..+||
T Consensus 303 ~~~-------------~y~---~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 303 LRH-------------LYP---SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred hhh-------------hcc---cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCC
Confidence 100 011 23566789999999999999999 999999976653322211111233555 78999
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccce
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~ 323 (826)
+++++...|..|++++.....- .. +.....+|++++.+.+++++++--.+..+.+||+..+...
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~d-----r~------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv----- 430 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVD-----RG------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLV----- 430 (519)
T ss_pred cEEEEEecccceeeechhhhhh-----hc------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHH-----
Confidence 9999999999999999844331 00 1112359999999999999999999999999999843210
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCC--eEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGS--IISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~--V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
.++..|+.. |..-+|-- +..++|+||+|+.|+||+..+++++... .+|...|.+++|.
T Consensus 431 ----------------~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L---sGHs~~vNcVswN 491 (519)
T KOG0293|consen 431 ----------------RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL---SGHSKTVNCVSWN 491 (519)
T ss_pred ----------------HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee---cCCcceeeEEecC
Confidence 122222221 44445543 4479999999999999999999998444 5999999999999
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|. +...+++++.||+|+||-..
T Consensus 492 P~-----~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 492 PA-----DPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CC-----CHHHhhccCCCCeEEEecCC
Confidence 97 67889999999999999875
No 67
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.85 E-value=7.5e-21 Score=191.61 Aligned_cols=233 Identities=13% Similarity=0.187 Sum_probs=180.3
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeec
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSL 271 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l 271 (826)
..|.|+.| |...+++|. |.+|++|+...-.......+|+|.|.|..-+.++|++|+.|.+|+|||...++. +
T Consensus 198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~-----l 270 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEP-----L 270 (499)
T ss_pred CceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCch-----h
Confidence 45777766 566788888 999999987664444445899999999777778999999999999999955542 1
Q ss_pred ccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEE
Q 003360 272 KQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIIS 351 (826)
Q Consensus 272 ~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~ 351 (826)
..+-.|..+|..+.|+. .++++++.|.++.+||+...... +. . .....|...|..
T Consensus 271 -----~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~i--------------t~-r---rVLvGHrAaVNv 325 (499)
T KOG0281|consen 271 -----NTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDI--------------TL-R---RVLVGHRAAVNV 325 (499)
T ss_pred -----hHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHH--------------HH-H---HHHhhhhhheee
Confidence 12345778999999974 59999999999999999743210 00 0 223456778999
Q ss_pred EEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCce
Q 003360 352 LNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 352 l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
+.|+.. ++++++.|.+|++|++.++.++. ...+|...|.|++|. +.++++|++|.+|++||+..|.+
T Consensus 326 Vdfd~k--yIVsASgDRTikvW~~st~efvR---tl~gHkRGIAClQYr--------~rlvVSGSSDntIRlwdi~~G~c 392 (499)
T KOG0281|consen 326 VDFDDK--YIVSASGDRTIKVWSTSTCEFVR---TLNGHKRGIACLQYR--------DRLVVSGSSDNTIRLWDIECGAC 392 (499)
T ss_pred eccccc--eEEEecCCceEEEEeccceeeeh---hhhcccccceehhcc--------CeEEEecCCCceEEEEeccccHH
Confidence 999754 89999999999999999999883 345899999988885 78999999999999999999999
Q ss_pred EEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccc
Q 003360 432 LSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAV 502 (826)
Q Consensus 432 i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~ 502 (826)
+..+.+|... +-++.+-+ ..+|..+.|+.|+||++....
T Consensus 393 LRvLeGHEeL---vRciRFd~-----------------------------krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 393 LRVLEGHEEL---VRCIRFDN-----------------------------KRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred HHHHhchHHh---hhheeecC-----------------------------ceeeeccccceEEEEeccccc
Confidence 9888777654 22333322 246666778899999998543
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.85 E-value=7.3e-21 Score=191.72 Aligned_cols=222 Identities=14% Similarity=0.197 Sum_probs=172.4
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..++.++.+..+-+||.+..+. ...+.+|.+.|-|+.|. .+.+++|+ |.+|++|+.+...
T Consensus 208 ~kiVSGlrDnTikiWD~n~~~c-----------------~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSLEC-----------------LKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred hhhhcccccCceEEeccccHHH-----------------HHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence 3445667788899999887432 12367999999999874 56888888 9999999877655
Q ss_pred eeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 225 LLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 225 ~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
.......|...|...--...+++|++.|.+|++||+..+.-.. +. ..+.+|.++|+.+.|+. +++++++.|
T Consensus 269 ~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it---~r----rVLvGHrAaVNvVdfd~--kyIVsASgD 339 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDIT---LR----RVLVGHRAAVNVVDFDD--KYIVSASGD 339 (499)
T ss_pred hhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHH---HH----HHHhhhhhheeeecccc--ceEEEecCC
Confidence 5544478888888822234699999999999999994443100 11 11347889999999964 599999999
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE-eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEe
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV-MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~-~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
.++++|+..+..+ ++. ..|+..|-|+.+. |+++++|+.|.+|++||+..|.|+
T Consensus 340 RTikvW~~st~ef----------------------vRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cL-- 393 (499)
T KOG0281|consen 340 RTIKVWSTSTCEF----------------------VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACL-- 393 (499)
T ss_pred ceEEEEeccceee----------------------ehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHH--
Confidence 9999999985543 222 2355668888775 789999999999999999999998
Q ss_pred eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 384 KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 384 ~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
....+|..-|.++.|. ...+++|.-||+|+|||+.++.
T Consensus 394 -RvLeGHEeLvRciRFd--------~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 394 -RVLEGHEELVRCIRFD--------NKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred -HHHhchHHhhhheeec--------CceeeeccccceEEEEeccccc
Confidence 4456999999999996 5679999999999999998763
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=206.32 Aligned_cols=264 Identities=16% Similarity=0.181 Sum_probs=205.2
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
+..++.......|.+||... .......+.+|.+.|.+++|..-+..+++|+ |.++++|+....
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~----------------~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNN----------------GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cCeEEecCCCceeEEeeccc----------------ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 45567777888888998876 2223333789999999999998889999999 999999976554
Q ss_pred ceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC
Q 003360 224 PLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 303 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~ 303 (826)
.......+|.+.|.+..-.+.++++|+.|.+|++|+++.+.. +..+ .+|..+|++|.++ +.++++|+.
T Consensus 282 ~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~--l~l~--------~~h~~~V~~v~~~--~~~lvsgs~ 349 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGAC--LNLL--------RGHTGPVNCVQLD--EPLLVSGSY 349 (537)
T ss_pred cEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcce--EEEe--------ccccccEEEEEec--CCEEEEEec
Confidence 444334789999999777888999999999999999965542 1112 3588999999998 789999999
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC-eeEE
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP-TVLY 382 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~-~~l~ 382 (826)
||+|++||..+.++. .....|...|+++.+.+. ..+++|+.|++|++||++++ +|++
T Consensus 350 d~~v~VW~~~~~~cl---------------------~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~ 407 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCL---------------------KSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH 407 (537)
T ss_pred CceEEEEEhhhceee---------------------eeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh
Confidence 999999999855442 233457889999988875 68999999999999999999 8885
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcc
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGAN 462 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~ 462 (826)
+. .+|.+-|..+.+. +++|++++.|++|++||..+++++.++..+ ....+.++...
T Consensus 408 tl---~~h~~~v~~l~~~--------~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~----------- 463 (537)
T KOG0274|consen 408 TL---QGHTSLVSSLLLR--------DNFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSALALG----------- 463 (537)
T ss_pred hh---cCCcccccccccc--------cceeEeccccccEEEeecccCceeeeeccC--CcccEEEeecC-----------
Confidence 44 4677777655553 688999999999999999999999887543 11222222211
Q ss_pred ccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccc
Q 003360 463 LSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSH 500 (826)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~ 500 (826)
++.++..+.++.+++|++++
T Consensus 464 ------------------~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 464 ------------------KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ------------------cceEEEEecCCeeEEEeccc
Confidence 23577777888999999984
No 70
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.3e-19 Score=177.54 Aligned_cols=206 Identities=15% Similarity=0.188 Sum_probs=145.4
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee-eCCCCCEEEEEECCCcEEEEeC---CCCcee
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDV---SCPLFL 266 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~---s~~~~~ 266 (826)
.-.|-.+-..-.+.++++++ |..|.+|..+.+.+..........-.+ .+|+|++|++++----|++|.. ..+..+
T Consensus 187 ~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fq 266 (420)
T KOG2096|consen 187 QVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQ 266 (420)
T ss_pred ccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchh
Confidence 33444555667788999988 889999988765544442222222223 8999999999999999999998 222210
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe---
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM--- 343 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~--- 343 (826)
+...+.++.+|..+|++++|+++++.+++.+.||+.+|||..-.-.. +..+.. ++.+
T Consensus 267 -----ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~------------~qDpk~---Lk~g~~p 326 (420)
T KOG2096|consen 267 -----EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA------------GQDPKI---LKEGSAP 326 (420)
T ss_pred -----hhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec------------CCCchH---hhcCCcc
Confidence 11123456789999999999999999999999999999998733111 110100 2221
Q ss_pred --eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 344 --KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 344 --~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
...+.-..|+.+|+|+.||..+.. .+.++..+.++.. -.....|...|+++.|++ +|.++++++ |..+
T Consensus 327 l~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~--~~~e~~h~~~Is~is~~~------~g~~~atcG-dr~v 396 (420)
T KOG2096|consen 327 LHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDY--PELEDIHSTTISSISYSS------DGKYIATCG-DRYV 396 (420)
T ss_pred hhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccc--hhHHHhhcCceeeEEecC------CCcEEeeec-ceee
Confidence 112334489999999988876544 6899999998877 333456889999999999 699999988 6778
Q ss_pred EEEECC
Q 003360 422 LVLDSD 427 (826)
Q Consensus 422 ~iwd~~ 427 (826)
+++--.
T Consensus 397 rv~~nt 402 (420)
T KOG2096|consen 397 RVIRNT 402 (420)
T ss_pred eeecCC
Confidence 777643
No 71
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=7.5e-18 Score=177.77 Aligned_cols=470 Identities=14% Similarity=0.170 Sum_probs=287.2
Q ss_pred ccccccccccceEEEecCCCCCEEEEEEecCc--------EEEEeCCCccccccccccccccccccccCCCCCCcCCeEE
Q 003360 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGE--------ILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISS 77 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW~~p~g~~latg~~DGs--------I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~ 77 (826)
|+....|.-.|.|+.- +||--.+|+|-.-|. +++||..+-.. ..+ ++ ....-|..
T Consensus 97 Qr~y~GH~ddikc~~v-HPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T----------L~V----~g--~f~~GV~~ 159 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAV-HPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST----------LHV----IG--FFDRGVTC 159 (626)
T ss_pred cccccCCCCceEEEee-cCCceeeccCcccccCCCcCCCeeeeccccccee----------eee----ec--ccccccee
Confidence 3444556778999997 579999998888884 89998655300 011 11 11224667
Q ss_pred EEEeeeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccE
Q 003360 78 LKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHF 157 (826)
Q Consensus 78 l~W~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l 157 (826)
++++..++ |.++..- |.+.+..++||.+.+......++ ..++-+....+. +.++-+++....|++
T Consensus 160 vaFsk~~~--G~~l~~v--D~s~~h~lSVWdWqk~~~~~~vk---~sne~v~~a~FH--------Ptd~nliit~Gk~H~ 224 (626)
T KOG2106|consen 160 VAFSKING--GSLLCAV--DDSNPHMLSVWDWQKKAKLGPVK---TSNEVVFLATFH--------PTDPNLIITCGKGHL 224 (626)
T ss_pred eeecccCC--CceEEEe--cCCCccccchhhchhhhccCcce---eccceEEEEEec--------cCCCcEEEEeCCceE
Confidence 77765332 3333321 22336678887765554221111 111122222222 233567899999999
Q ss_pred EEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCcce
Q 003360 158 YAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQ 237 (826)
Q Consensus 158 ~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~ 237 (826)
++|+...-. +.+..-..-......|.|++|.++|+.+-.-++|.|.+|..+...+......|.|+|.
T Consensus 225 ~Fw~~~~~~-------------l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~ 291 (626)
T KOG2106|consen 225 YFWTLRGGS-------------LVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF 291 (626)
T ss_pred EEEEccCCc-------------eEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE
Confidence 999765510 0000000001112679999999999986555599999998766554444458999999
Q ss_pred e--eCCCCCEEEEEECCCcEEEEeCCCCceee---------eeec---------------------ccccccccccCCCC
Q 003360 238 S--HSKVKNLFITGHSDGAINFWDVSCPLFLL---------ILSL---------------------KQQSEKDFSLSGIP 285 (826)
Q Consensus 238 ~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~---------i~~l---------------------~~~~~~~~~~h~~~ 285 (826)
+ .-.+|.+| +|+.|..|-.||-..+.+.. +..+ ...-...+.+|+..
T Consensus 292 ~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~de 370 (626)
T KOG2106|consen 292 SLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDE 370 (626)
T ss_pred EEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccc
Confidence 9 56667655 59999999999952221111 0000 00001124567789
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe
Q 003360 286 LTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS 365 (826)
Q Consensus 286 V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs 365 (826)
.+.++.+|+...|++++.|++|++|+ . ... .-......++.|+.|+|.| .||+|+
T Consensus 371 lwgla~hps~~q~~T~gqdk~v~lW~-~-~k~----------------------~wt~~~~d~~~~~~fhpsg-~va~Gt 425 (626)
T KOG2106|consen 371 LWGLATHPSKNQLLTCGQDKHVRLWN-D-HKL----------------------EWTKIIEDPAECADFHPSG-VVAVGT 425 (626)
T ss_pred eeeEEcCCChhheeeccCcceEEEcc-C-Cce----------------------eEEEEecCceeEeeccCcc-eEEEee
Confidence 99999999999999999999999999 2 111 1122236689999999999 899999
Q ss_pred cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcc
Q 003360 366 DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRA 445 (826)
Q Consensus 366 ~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~ 445 (826)
..|...|.|..+...+ +.+ .. ..+++.+.|+| +|.+|++|+.|+.|+||-...+....+..... .+
T Consensus 426 ~~G~w~V~d~e~~~lv-~~~--~d-~~~ls~v~ysp------~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~--~g-- 491 (626)
T KOG2106|consen 426 ATGRWFVLDTETQDLV-TIH--TD-NEQLSVVRYSP------DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC--SG-- 491 (626)
T ss_pred ccceEEEEecccceeE-EEE--ec-CCceEEEEEcC------CCCEEEEecCCCeEEEEEECCCCcEEEEeeee--cC--
Confidence 9999999999986555 222 23 78999999999 69999999999999999887544332211111 11
Q ss_pred eEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC-cEEEEeccccccccceeeeeeecCCCCceeeEe
Q 003360 446 LFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AACAYSLSHAVQGVKKVLYKKKFHSSSCCWAST 524 (826)
Q Consensus 446 lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~-~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~ 524 (826)
-.+.-+ .|+++.+|++.-+-+ .|-.| .++...... .++.++-....|.....
T Consensus 492 s~ithL-------------------------DwS~Ds~~~~~~S~d~eiLyW-~~~~~~~~t-s~kDvkW~t~~c~lGF~ 544 (626)
T KOG2106|consen 492 SPITHL-------------------------DWSSDSQFLVSNSGDYEILYW-KPSECKQIT-SVKDVKWATYTCTLGFE 544 (626)
T ss_pred ceeEEe-------------------------eecCCCceEEeccCceEEEEE-ccccCcccc-eecceeeeeeEEEEEEE
Confidence 111122 467777888887766 67778 443222111 13333333233433222
Q ss_pred eee-------------CCceEEEEEEeeceEEEeccCCccccccccccceeecCCCCCCCcccceeccCCCcEEEEcCCe
Q 003360 525 FYS-------------GSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQ 591 (826)
Q Consensus 525 ~~~-------------~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~ 591 (826)
+-. -....+++.-.+|.|++++.|--++-+.+ +.|.. .......+.|+.+-+.++-+| .
T Consensus 545 v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~----he~~g---hs~~vt~V~Fl~~d~~li~tg-~ 616 (626)
T KOG2106|consen 545 VFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS----HEYGG---HSSHVTNVAFLCKDSHLISTG-K 616 (626)
T ss_pred EecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc----eeecc---ccceeEEEEEeeCCceEEecC-C
Confidence 111 22445677778899999999965544432 33331 234456666775555555555 4
Q ss_pred eeee
Q 003360 592 EAFF 595 (826)
Q Consensus 592 e~~~ 595 (826)
...+
T Consensus 617 D~Si 620 (626)
T KOG2106|consen 617 DTSI 620 (626)
T ss_pred CceE
Confidence 4343
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=3.5e-20 Score=185.09 Aligned_cols=211 Identities=13% Similarity=0.198 Sum_probs=171.4
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceee-c-------ccccCCccee--eCCCCCEEEEEECCCcEEEE
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLD-F-------ETKLKDGSQS--HSKVKNLFITGHSDGAINFW 258 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~-~-------~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriW 258 (826)
+..+.+-|..|+||+.++++|+ ||.|-+|+-..+.+.. + ..-+...|.| |+.|.+++++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 3457889999999999999999 9999999643222111 1 1226788888 99999999999999999999
Q ss_pred eC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 259 DV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 259 D~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
.+ ++.++ ..+. ..|...|+|+.|+.|+..+++++.|.+|||--++.+.+.
T Consensus 291 ri~tG~Cl---RrFd-------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L------------------- 341 (508)
T KOG0275|consen 291 RIETGQCL---RRFD-------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL------------------- 341 (508)
T ss_pred EEecchHH---HHhh-------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhH-------------------
Confidence 99 66552 1122 368899999999999999999999999999999866542
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
..+..|.+.|+...|.++|.++++++.||+|+||+..+..|+.++... +..-+|.++...|- +...+++|..
T Consensus 342 --KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PK-----npeh~iVCNr 413 (508)
T KOG0275|consen 342 --KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPK-----NPEHFIVCNR 413 (508)
T ss_pred --HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCC-----CCceEEEEcC
Confidence 234456778999999999999999999999999999999999776643 45667888877774 5778999999
Q ss_pred CCcEEEEECCCCceEEeeecc
Q 003360 418 DSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
..+|+|.++. |+.+.++.-.
T Consensus 414 sntv~imn~q-GQvVrsfsSG 433 (508)
T KOG0275|consen 414 SNTVYIMNMQ-GQVVRSFSSG 433 (508)
T ss_pred CCeEEEEecc-ceEEeeeccC
Confidence 9999999998 8998887433
No 73
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.84 E-value=1.9e-19 Score=190.14 Aligned_cols=304 Identities=13% Similarity=0.102 Sum_probs=206.9
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC-----CCceeecccccCCccee--eCCCCCEEEEEECCCcE
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS-----VPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAI 255 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~-----~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtV 255 (826)
..+.++.|.-.|+++++-|.|-.+++|+ |-+|++|+-. .+.+..+.-.-...|.+ |++.+..|++.+..-..
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 3456788899999999999999999999 9999999532 23333332223344455 99999998888888899
Q ss_pred EEEeCCCCceeeeeeccc-c---cccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecC
Q 003360 256 NFWDVSCPLFLLILSLKQ-Q---SEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSK 330 (826)
Q Consensus 256 riWD~s~~~~~~i~~l~~-~---~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~ 330 (826)
+|+|-.+-++.- ..+. + ......+|-..++|.+|+|.. ..|++++.||++|||++......
T Consensus 239 kl~DRdG~~~~e--~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q------------ 304 (641)
T KOG0772|consen 239 KLLDRDGFEIVE--FSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ------------ 304 (641)
T ss_pred eEEccCCceeee--eeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh------------
Confidence 999986654311 1111 0 012236788999999999976 68999999999999999843220
Q ss_pred CCCeEEEEEEEEe---eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCC--CeeEEEEeecccC
Q 003360 331 KGNSHIIHSVKVM---KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISS--GIVSLQFETCSLQ 405 (826)
Q Consensus 331 ~~~~~~~~~~~~~---~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~--~V~sl~f~~~~~~ 405 (826)
.++ ++.. ...-+++..+|+++|.++|.|+.||.|.+||.++..+--...+...|.. .|+||.|++
T Consensus 305 --~qV----ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~---- 374 (641)
T KOG0772|consen 305 --LQV----IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY---- 374 (641)
T ss_pred --eeE----EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc----
Confidence 011 1111 1244699999999999999999999999999876554433444455665 899999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCc-eEEeeeccCCC-CCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCC
Q 003360 406 GFEKNFLVIATKDSSVLVLDSDNGN-MLSTNLIHPKK-PSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQW 483 (826)
Q Consensus 406 ~~d~~~l~sgs~Dg~V~iwd~~tg~-~i~~~~~~~~~-~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (826)
||++|++-+.|+++++||++.-+ ++.+..+.+.. +.. -..|+|++.
T Consensus 375 --dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~t------------------------------dc~FSPd~k 422 (641)
T KOG0772|consen 375 --DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGT------------------------------DCCFSPDDK 422 (641)
T ss_pred --ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCC------------------------------ccccCCCce
Confidence 69999999999999999998543 33332211111 000 014667777
Q ss_pred EEEEe-------ecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCc
Q 003360 484 FVLLC-------SEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPEL 550 (826)
Q Consensus 484 ~vv~~-------se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L 550 (826)
+|+.+ ....+.+|+.. .-..++++.+...+| ....++ ++---+.+.++||.++++.=|..
T Consensus 423 li~TGtS~~~~~~~g~L~f~d~~-----t~d~v~ki~i~~aSv-v~~~Wh-pkLNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 423 LILTGTSAPNGMTAGTLFFFDRM-----TLDTVYKIDISTASV-VRCLWH-PKLNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred EEEecccccCCCCCceEEEEecc-----ceeeEEEecCCCceE-EEEeec-chhhheeeecCCCceEEEECccc
Confidence 77765 23457777765 344566665542222 111111 44455677788999999877753
No 74
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.5e-18 Score=162.45 Aligned_cols=308 Identities=15% Similarity=0.238 Sum_probs=214.8
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
.+.|.++++| |+|.+.|+|+..-++++--.+.-...+.......--|.+... -.+.++..|.+..|+. .|.|+.
T Consensus 32 sqairav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~k-r~khhkgsiyc~~ws~----~gelia 105 (350)
T KOG0641|consen 32 SQAIRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCK-RNKHHKGSIYCTAWSP----CGELIA 105 (350)
T ss_pred hhheeeEEec-CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEee-eccccCccEEEEEecC----ccCeEE
Confidence 5578899995 799999999999999998766653333322222212222221 1345677899999976 678887
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
.|..+. .+.++.++..+..
T Consensus 106 tgsndk----~ik~l~fn~dt~~--------------------------------------------------------- 124 (350)
T KOG0641|consen 106 TGSNDK----TIKVLPFNADTCN--------------------------------------------------------- 124 (350)
T ss_pred ecCCCc----eEEEEeccccccc---------------------------------------------------------
Confidence 777643 4444444332200
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeC----CCeEEEecCCcEEEeccC---CCceeecccccCCccee-eCCCCC
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITG----NSFILSSADEDYSLLAKS---VPPLLDFETKLKDGSQS-HSKVKN 244 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~----~~~l~~~~d~~i~~w~~~---~~~~~~~~~~h~g~V~~-~s~~~~ 244 (826)
..-..+.+..|++.|..++|..+ +..|++++.+..++|... ...+..+ .+|+|-|.+ ++-++-
T Consensus 125 --------~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~-sghtghilalyswn~~ 195 (350)
T KOG0641|consen 125 --------ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL-SGHTGHILALYSWNGA 195 (350)
T ss_pred --------ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee-cCCcccEEEEEEecCc
Confidence 00011234678899999998543 456777776777777433 2344444 889999999 788889
Q ss_pred EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
++++|++|.+||+||+.-+. .+..+.+.-.. --....+|.+++..|.+++|++|-.|....+||++.+..
T Consensus 196 m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~-~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~------- 265 (350)
T KOG0641|consen 196 MFASGSQDKTIRFWDLRVNS--CVNTLDNDFHD-GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM------- 265 (350)
T ss_pred EEEccCCCceEEEEeeeccc--eeeeccCcccC-CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce-------
Confidence 99999999999999994433 22333321000 011227899999999999999999999999999995433
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEe--eecccCCCCCeeEEEEeec
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQ--KHIASDISSGIVSLQFETC 402 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~--~~~~~~~~~~V~sl~f~~~ 402 (826)
. .++.+|...|.|+.|+|...++++|+.|..|++-|+.+ .+... ......|...+..+.|.|.
T Consensus 266 ----------i----q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 266 ----------I----QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred ----------e----eeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCceEEEEeccCceEEEEecCc
Confidence 1 45667788899999999999999999999999999954 22211 2223468888888999994
Q ss_pred ccCCCCCcEEEEEECCCcEEEEECC
Q 003360 403 SLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 403 ~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
.-.+++.+.|.++.+|-+.
T Consensus 331 ------d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 ------DFSFISSSADKTATLWALN 349 (350)
T ss_pred ------cceeeeccCcceEEEeccC
Confidence 5567888999999999764
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.83 E-value=7.9e-19 Score=182.26 Aligned_cols=228 Identities=18% Similarity=0.254 Sum_probs=179.2
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL 226 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~ 226 (826)
.+.+..+..+.++|... ++....+++|.-.|+.+.|+++...+++++ |..|++|........
T Consensus 234 ilTGG~d~~av~~d~~s-----------------~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 234 ILTGGEDKTAVLFDKPS-----------------NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred ceecCCCCceEEEecch-----------------hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 34555555666766544 223345689999999999999999999999 999999965443333
Q ss_pred ecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 227 DFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 227 ~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
....+|.+.|.. .+|.|+||++++.||+..+.|.+.... +..... +..+..+++.+|+|||.+|.+|..|
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~--lt~vs~------~~s~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ--LTVVSD------ETSDVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE--EEEEee------ccccceeEEeeEcCCceEEeccCCC
Confidence 334789999998 899999999999999999999944432 111210 1233579999999999999999999
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
|.|+|||+..+... .++..|.++|.+++|+.+|-+||++++|+.|++||+|.-+...++
T Consensus 369 ~~vkiwdlks~~~~---------------------a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNV---------------------AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred ceEEEEEcCCcccc---------------------ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee
Confidence 99999999854321 567778999999999999999999999999999999988766555
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
... ...+|.++.|... |.+|+.++.|=.|++++-.+.
T Consensus 428 ~l~--~~~~v~s~~fD~S------Gt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 428 QLD--EKKEVNSLSFDQS------GTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred ecc--ccccceeEEEcCC------CCeEEeecceeEEEEEecccc
Confidence 442 2337999999984 999999998888888885543
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.83 E-value=7.7e-20 Score=188.86 Aligned_cols=288 Identities=17% Similarity=0.165 Sum_probs=202.5
Q ss_pred ccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCC
Q 003360 8 SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKA 87 (826)
Q Consensus 8 ~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~ 87 (826)
.++.|+.++..+-|. ++...|+||..|.-|.+|++....... +
T Consensus 170 ~ld~h~gev~~v~~l-~~sdtlatgg~Dr~Ik~W~v~~~k~~~------------------------~------------ 212 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFL-RNSDTLATGGSDRIIKLWNVLGEKSEL------------------------I------------ 212 (459)
T ss_pred hhhccccccceeEEc-cCcchhhhcchhhhhhhhhcccchhhh------------------------h------------
Confidence 345678999999995 588999999999999999877641000 0
Q ss_pred ceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 88 SRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 88 g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
+.|.-.+|. +.. +. ..++...++..++++.+.+|+..+..
T Consensus 213 ~tLaGs~g~---------it~-----------~d-------------------~d~~~~~~iAas~d~~~r~Wnvd~~r- 252 (459)
T KOG0288|consen 213 STLAGSLGN---------ITS-----------ID-------------------FDSDNKHVIAASNDKNLRLWNVDSLR- 252 (459)
T ss_pred hhhhccCCC---------cce-----------ee-------------------ecCCCceEEeecCCCceeeeeccchh-
Confidence 111111111 000 00 11233556888889999999988721
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeCCCCCEE
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLF 246 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l 246 (826)
...++.+|...|+++.|......+++|+ |.+++.|+.+.........+ ...+...--....+
T Consensus 253 ----------------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~~~~~ 315 (459)
T KOG0288|consen 253 ----------------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCSISDV 315 (459)
T ss_pred ----------------hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEecceee
Confidence 2345789999999999988777788888 99999997654221111000 11111122225678
Q ss_pred EEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEE
Q 003360 247 ITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 247 ~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
++||.|+.||+||...... .+.+ ..+ +.|++|..++++..|.+++.|.++.+.|+++....+
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~--~~sv--------~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~------- 377 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADK--TRSV--------PLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ------- 377 (459)
T ss_pred eecccccceEEEeccCCce--eeEe--------ecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEE-------
Confidence 9999999999999844331 1222 233 499999999999999999999999999999543211
Q ss_pred eecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCC
Q 003360 327 TGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQG 406 (826)
Q Consensus 327 ~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~ 406 (826)
.++..+ .+....++.+.|||++.++|+|+.||.|+||++.++++.+..... .....|+++.|.+.
T Consensus 378 ~~sA~g----------~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s-~s~~aI~s~~W~~s---- 442 (459)
T KOG0288|consen 378 TFSAEG----------FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS-TSNAAITSLSWNPS---- 442 (459)
T ss_pred Eeeccc----------cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC-CCCcceEEEEEcCC----
Confidence 111111 112345899999999999999999999999999999998666532 22337999999995
Q ss_pred CCCcEEEEEECCCcEEEE
Q 003360 407 FEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 407 ~d~~~l~sgs~Dg~V~iw 424 (826)
|..|++++.++.+.+|
T Consensus 443 --G~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 443 --GSGLLSADKQKAVTLW 458 (459)
T ss_pred --CchhhcccCCcceEec
Confidence 9999999999999999
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.83 E-value=5.1e-19 Score=202.98 Aligned_cols=320 Identities=17% Similarity=0.194 Sum_probs=220.6
Q ss_pred ccccccceEEEecCCCCCEEEEEE--ecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCC
Q 003360 10 YHETKQVTSACWACPIGSKVAVGY--SNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKA 87 (826)
Q Consensus 10 ~~~~~~i~slcW~~p~g~~latg~--~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~ 87 (826)
+++++.|.++.- +|||..+|||+ .||.+++|+...-.......... +.+.--.-..|..+|.+++|.. +
T Consensus 10 ~H~~~~IfSIdv-~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~----l~k~l~~m~~h~~sv~CVR~S~----d 80 (942)
T KOG0973|consen 10 NHNEKSIFSIDV-HPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNEN----LPKHLCTMDDHDGSVNCVRFSP----D 80 (942)
T ss_pred ccCCeeEEEEEe-cCCceeEecCCccccccceeeccccccchhhhhhcc----cchhheeeccccCceeEEEECC----C
Confidence 345778999996 58999999999 99999999987752222111111 1111112345677899999987 7
Q ss_pred ceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 88 SRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 88 g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
|..|..|++|- ++.+|.+.... .+. +.++..|.-.+
T Consensus 81 G~~lAsGSDD~----~v~iW~~~~~~----------------------~~~----------~fgs~g~~~~v-------- 116 (942)
T KOG0973|consen 81 GSYLASGSDDR----LVMIWERAEIG----------------------SGT----------VFGSTGGAKNV-------- 116 (942)
T ss_pred CCeEeeccCcc----eEEEeeecccC----------------------Ccc----------ccccccccccc--------
Confidence 88888888853 44455443200 000 00111111101
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCC
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN 244 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~ 244 (826)
-.......+..|+..|..++|+|++.++++++ |++|.+|+...-.......+|.+-|-. |.|-|+
T Consensus 117 ------------E~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk 184 (942)
T KOG0973|consen 117 ------------ESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK 184 (942)
T ss_pred ------------ceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccC
Confidence 01123345678999999999999999999999 999999987654444445789998877 999999
Q ss_pred EEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEEeCCCCCcc
Q 003360 245 LFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS----GMVRIFKLKYEPHAI 319 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d----g~V~iwd~~~~~~~~ 319 (826)
+|||-+.|++|+||+. .... .+.+...-.. ..-..-+.-++|+|||.+|++...- -++.|.+-.
T Consensus 185 y~ASqsdDrtikvwrt~dw~i---~k~It~pf~~--~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~------ 253 (942)
T KOG0973|consen 185 YFASQSDDRTLKVWRTSDWGI---EKSITKPFEE--SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG------ 253 (942)
T ss_pred eeeeecCCceEEEEEccccee---eEeeccchhh--CCCcceeeecccCCCcCeecchhhccCCcceeEEEecC------
Confidence 9999999999999997 3222 1222111000 1112467899999999999987431 134443322
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-------------C----CEEEEEecCCeEEEEecCCCeeEE
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-------------S----QHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-------------g----~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
+-... ..+..|.++++++.|+|. + -.+|+|+.|++|.||....++.++
T Consensus 254 ------------tWk~~---~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 254 ------------TWKVD---KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ------------Cceee---eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 11111 566778889999999872 1 168999999999999998888885
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
..+ .-.+..|..+.|+| ||-.|+++|.||+|.++....
T Consensus 319 vi~--~lf~~SI~DmsWsp------dG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 319 VIH--NLFNKSIVDMSWSP------DGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhh--hhhcCceeeeeEcC------CCCeEEEEecCCeEEEEEcch
Confidence 443 34567899999999 799999999999999998763
No 78
>PTZ00420 coronin; Provisional
Probab=99.83 E-value=3.2e-18 Score=195.20 Aligned_cols=206 Identities=13% Similarity=0.138 Sum_probs=147.4
Q ss_pred eeeecccCCCEEEEEEeeC-CCeEEEec-CCcEEEeccCCC---------ceeecccccCCccee--eCCCCCE-EEEEE
Q 003360 185 MLKMPFLDSSITAMKLITG-NSFILSSA-DEDYSLLAKSVP---------PLLDFETKLKDGSQS--HSKVKNL-FITGH 250 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~~---------~~~~~~~~h~g~V~~--~s~~~~~-l~Tgs 250 (826)
...+..|...|++++|+|+ +..+++|+ |++|++|+.... +...+ .+|.+.|.+ |+|++.. |+||+
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEEEEECCCCCeEEEEEe
Confidence 3457899999999999997 78889988 999999975421 11122 578999988 9998875 57999
Q ss_pred CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecC
Q 003360 251 SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSK 330 (826)
Q Consensus 251 ~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~ 330 (826)
.||+|+|||+..... +..+. |...|++++|+|++.+|++++.|+.|+|||++++...
T Consensus 146 ~DgtIrIWDl~tg~~--~~~i~---------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i------------ 202 (568)
T PTZ00420 146 FDSFVNIWDIENEKR--AFQIN---------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA------------ 202 (568)
T ss_pred CCCeEEEEECCCCcE--EEEEe---------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE------------
Confidence 999999999954442 12221 3468999999999999999999999999999854321
Q ss_pred CCCeEEEEEEEEeeccCCe-----EEEEEccCCCEEEEEecCC----eEEEEecCC-CeeEEeeecccCCCCCeeEEEEe
Q 003360 331 KGNSHIIHSVKVMKINGSI-----ISLNMNRNSQHLAVGSDQG----YVYLLDTEG-PTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~V-----~~l~~s~~g~~lasGs~dG----~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
..+..|.+.+ ....|++++.++++++.|+ +|+|||++. ...+..... ..+.+.+... |.
T Consensus 203 ---------~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-d~~~~~L~p~-~D 271 (568)
T PTZ00420 203 ---------SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-DNASAPLIPH-YD 271 (568)
T ss_pred ---------EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-cCCccceEEe-ee
Confidence 1122333332 3345668888888877664 799999985 445533322 2222222222 22
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
+. ++.++++|+.|++|++|+...+.
T Consensus 272 ~~-----tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 272 ES-----TGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CC-----CCCEEEEEECCCeEEEEEccCCc
Confidence 21 47889999999999999998764
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=9.3e-19 Score=184.73 Aligned_cols=244 Identities=12% Similarity=0.160 Sum_probs=187.0
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL 226 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~ 226 (826)
=++++.+-.+.+|+.......- .+.--...|..+.|-.||+.+++|. .|.|++++.+.....
T Consensus 41 d~aVt~S~rvqly~~~~~~~~k-----------------~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 41 DFAVTSSVRVQLYSSVTRSVRK-----------------TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ceEEecccEEEEEecchhhhhh-----------------hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3677778888888876632110 0122335688999999999999998 899999985543333
Q ss_pred ecccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCC-EEEEEe
Q 003360 227 DFETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR-VLVSGD 302 (826)
Q Consensus 227 ~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~-~Lasgs 302 (826)
.....|+..|.. |+|.+ ..+++|+.|+.+++||+++... .. ++.+|.+.|.|.+|+|... ++++|+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~--------~l~~htDYVR~g~~~~~~~hivvtGs 173 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QA--------ELSGHTDYVRCGDISPANDHIVVTGS 173 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EE--------EecCCcceeEeeccccCCCeEEEecC
Confidence 334789999887 88755 5888999999999999976652 11 2357999999999999765 899999
Q ss_pred CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE
Q 003360 303 QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
.||+|++||.+.... . +....|..+|..+.+-|.|.++|+++.+ .|+|||+.+|..+.
T Consensus 174 YDg~vrl~DtR~~~~----------------~-----v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 174 YDGKVRLWDTRSLTS----------------R-----VVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLL 231 (487)
T ss_pred CCceEEEEEeccCCc----------------e-----eEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceeh
Confidence 999999999984321 1 5667788899999999999999988766 69999998555442
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEec
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILN 452 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~ 452 (826)
.. ...|...|||+.+.. ++..|++|+-|+.|++||..+-+.+..+ ..++.+++|...+
T Consensus 232 ~~--~~~H~KtVTcL~l~s------~~~rLlS~sLD~~VKVfd~t~~Kvv~s~----~~~~pvLsiavs~ 289 (487)
T KOG0310|consen 232 TS--MFNHNKTVTCLRLAS------DSTRLLSGSLDRHVKVFDTTNYKVVHSW----KYPGPVLSIAVSP 289 (487)
T ss_pred hh--hhcccceEEEEEeec------CCceEeecccccceEEEEccceEEEEee----ecccceeeEEecC
Confidence 22 235889999999998 5899999999999999998777777654 3456777776653
No 80
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5e-19 Score=193.96 Aligned_cols=159 Identities=14% Similarity=0.194 Sum_probs=130.2
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEE--eCC
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSG--DQS 304 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasg--s~d 304 (826)
.+|...|.. |+++++++|+|+.|+.+.|||...... ...+..|.++|.+++|||- ..+||+| +.|
T Consensus 298 ~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p----------~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 298 QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP----------KFTFTEHTAAVKALAWCPWQSGLLATGGGSAD 367 (484)
T ss_pred hcccceeeeeEECCCCCeeccCCCccceEeccCCCccc----------cEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence 568888877 999999999999999999999944432 1224578999999999995 5788886 568
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE--EecCCeEEEEecCCCeeEE
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV--GSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las--Gs~dG~V~vwD~~~~~~l~ 382 (826)
+.|++||..++.. +......++|++|.|++.++-+++ |+.+..|.||++.+.+.+.
T Consensus 368 ~~i~fwn~~~g~~----------------------i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~ 425 (484)
T KOG0305|consen 368 RCIKFWNTNTGAR----------------------IDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA 425 (484)
T ss_pred cEEEEEEcCCCcE----------------------ecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee
Confidence 9999999986544 334444778999999999865554 6778899999998877663
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
.+ .+|...|..++++| |+..+++|+.|.++++|++-..
T Consensus 426 ~l---~gH~~RVl~la~SP------dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 426 EL---LGHTSRVLYLALSP------DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ee---cCCcceeEEEEECC------CCCEEEEecccCcEEeccccCC
Confidence 33 58999999999999 6999999999999999998753
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.82 E-value=2.5e-18 Score=178.60 Aligned_cols=209 Identities=20% Similarity=0.213 Sum_probs=170.1
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeee
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLIL 269 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~ 269 (826)
+.++.+...+..+.+++|+ |..+.+++...........+|+-.|.. ++++...+++++.|-.||||.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---- 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---- 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC----
Confidence 6788888888778889998 889999987766666555899999988 999999999999999999999822210
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-eccCC
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGS 348 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~ 348 (826)
......|..+|+.+..+|.+.+|++++.||+..+.|++.+. +.. .... ...-.
T Consensus 296 ------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~-----------------~lt---~vs~~~s~v~ 349 (506)
T KOG0289|consen 296 ------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS-----------------QLT---VVSDETSDVE 349 (506)
T ss_pred ------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc-----------------EEE---EEeeccccce
Confidence 11134688999999999999999999999999999998443 322 1111 12335
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 349 IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 349 V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+++.+|+|||.++++|..||.|+|||+..+..+..+ .+|.++|+.+.|+. +|-+|++++.|+.|++||++.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F---pght~~vk~i~FsE------NGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF---PGHTGPVKAISFSE------NGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccC---CCCCCceeEEEecc------CceEEEEEecCCeEEEEEehh
Confidence 999999999999999999999999999999877444 37999999999998 599999999999999999997
Q ss_pred CceEEeeeccCC
Q 003360 429 GNMLSTNLIHPK 440 (826)
Q Consensus 429 g~~i~~~~~~~~ 440 (826)
-+...++....+
T Consensus 421 l~n~kt~~l~~~ 432 (506)
T KOG0289|consen 421 LKNFKTIQLDEK 432 (506)
T ss_pred hcccceeecccc
Confidence 776666644443
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6e-19 Score=171.77 Aligned_cols=227 Identities=16% Similarity=0.210 Sum_probs=175.0
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCe-EEEec-CCcEEEeccCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF-ILSSA-DEDYSLLAKSV 222 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~~ 222 (826)
...+++...+|.|.+||+.. +..+...+..|...|..+.+++..+. +++++ |++|++|....
T Consensus 73 e~~~~~a~GDGSLrl~d~~~----------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTM----------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cceEEEEecCceEEEeccCC----------------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 45678889999999999655 11223346789999999999986654 45567 99999996554
Q ss_pred C-ceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCC-CC
Q 003360 223 P-PLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SR 296 (826)
Q Consensus 223 ~-~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~ 296 (826)
+ .+.++ .+|..-|.. |+| .++++++++.||+.++||+. .+..+. +..|...|.|+.|+.- ..
T Consensus 137 ~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-----------i~ah~~Eil~cdw~ky~~~ 204 (311)
T KOG0277|consen 137 PNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-----------IEAHNSEILCCDWSKYNHN 204 (311)
T ss_pred CcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-----------EEeccceeEeecccccCCc
Confidence 4 34455 889998888 887 57799999999999999993 222111 3468889999999984 57
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEec
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~ 375 (826)
.|++|+.|+.|+.||++.-.. +. .....|.-.|+.++|||.. ..||+++.|-++||||.
T Consensus 205 vl~Tg~vd~~vr~wDir~~r~----------------pl----~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 205 VLATGGVDNLVRGWDIRNLRT----------------PL----FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred EEEecCCCceEEEEehhhccc----------------cc----eeecCCceEEEEEecCcchhhHhhhccccceEEeccc
Confidence 899999999999999984322 11 2334455679999999954 57899999999999999
Q ss_pred CCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 376 EGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
..+.-. ......|..-|..+.|++. +..++++++.|+.++||+.
T Consensus 265 ~~~ds~--~e~~~~HtEFv~g~Dws~~-----~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSA--IETVDHHTEFVCGLDWSLF-----DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhh--hhhhhccceEEeccccccc-----cCceeeecccccceeeecc
Confidence 855443 2333578888889999986 6889999999999999985
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.82 E-value=1.1e-18 Score=173.88 Aligned_cols=233 Identities=11% Similarity=0.160 Sum_probs=165.5
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecC-CcEEEeccCCC-
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSAD-EDYSLLAKSVP- 223 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d-~~i~~w~~~~~- 223 (826)
..++.++.++.+-+||...-.. + ..+..-.-..+|.+++|+|.|.+++.|.| -++++|+....
T Consensus 185 ~ILiS~srD~tvKlFDfsK~sa--------------K-rA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSA--------------K-RAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred heEEeccCCCeEEEEecccHHH--------------H-HHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence 4456667778888888654110 0 00001112247899999999999999995 58999976542
Q ss_pred ceeec--ccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCC-CCeEEEEEeCCCCE
Q 003360 224 PLLDF--ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSG-IPLTALYYDGTSRV 297 (826)
Q Consensus 224 ~~~~~--~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~-~~V~~l~fsp~~~~ 297 (826)
.+... ...|+++|++ +++.+++++||+.||.|||||- +++. +.++. ..|+ ..|.+..|..++++
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC---v~t~~-------~AH~gsevcSa~Ftkn~ky 319 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC---VRTIG-------NAHGGSEVCSAVFTKNGKY 319 (430)
T ss_pred EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH---HHHHH-------hhcCCceeeeEEEccCCeE
Confidence 22222 3569999999 9999999999999999999998 6665 23333 3565 78999999999999
Q ss_pred EEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-CCeEEEEecC
Q 003360 298 LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QGYVYLLDTE 376 (826)
Q Consensus 298 Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~ 376 (826)
+++.+.|..|++|.+.++.... .+..-|.. .-...-+...|+....+++.-.+ .+.+.-||.+
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l~-------~YtGAg~t---------grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRMLK-------EYTGAGTT---------GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred EeecCCcceeeeeeecCCceEE-------EEecCCcc---------cchhhhhhhhhcCccceEEccccccCceeecccc
Confidence 9999999999999998764410 00000000 00011233456666666666553 5678899999
Q ss_pred CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 377 GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 377 ~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+...+ ..+..+|++++..+.-+|. ..-+++|+.|-.+++|-.+
T Consensus 384 tadr~--~l~slgHn~a~R~i~HSP~------~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 384 TADRV--ALLSLGHNGAVRWIVHSPV------EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred chhhh--hhcccCCCCCceEEEeCCC------CCceeeecccceeeeeeec
Confidence 88765 3344689999999999995 8889999999999999754
No 84
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.81 E-value=3.8e-19 Score=172.48 Aligned_cols=281 Identities=16% Similarity=0.155 Sum_probs=204.3
Q ss_pred cceeeecccCCCEEEEEEee---CCCeEEEec-CCcEEEeccCC-CceeecccccCCccee--eCCCCCEEEEEECCCcE
Q 003360 183 EVMLKMPFLDSSITAMKLIT---GNSFILSSA-DEDYSLLAKSV-PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAI 255 (826)
Q Consensus 183 ~~~~~l~~h~~~Vt~~~fs~---~~~~l~~~~-d~~i~~w~~~~-~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtV 255 (826)
+.|++..+|.-+|-.++|+| +|-+|++++ |+.-.+-+..+ .|+.+| .+|+|.|++ ...+-..-++++.|=+-
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~na~~aasaaadfta 83 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKNATRAASAAADFTA 83 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCchhhhhhhhcccchh
Confidence 35677889999999999976 566788888 88755554433 467777 899999999 66666788999999999
Q ss_pred EEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 256 NFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 256 riWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
++||+ ++.++ ..+. |.--|.+++|+.|+..|++|+.+..+||||++..... +
T Consensus 84 kvw~a~tgdel---hsf~---------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap---------------p 136 (334)
T KOG0278|consen 84 KVWDAVTGDEL---HSFE---------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP---------------P 136 (334)
T ss_pred hhhhhhhhhhh---hhhh---------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC---------------c
Confidence 99999 77773 2222 5568999999999999999999999999999854321 1
Q ss_pred EEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 335 HIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
..+..|.+.|..+-|....+.+++.++|++||+||.++++.+.+.. ...+|+++..++ |+.+| +
T Consensus 137 -----~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~----~~s~VtSlEvs~------dG~il-T 200 (334)
T KOG0278|consen 137 -----KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE----FNSPVTSLEVSQ------DGRIL-T 200 (334)
T ss_pred -----hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe----cCCCCcceeecc------CCCEE-E
Confidence 4456678889999999888889999999999999999999996664 456899999998 46554 4
Q ss_pred EECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC-cE
Q 003360 415 ATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AA 493 (826)
Q Consensus 415 gs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~-~i 493 (826)
-...+.|++||..+-..+..+.+-.+..+ .. -+|+..++|+..++ .+
T Consensus 201 ia~gssV~Fwdaksf~~lKs~k~P~nV~S-----AS---------------------------L~P~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLLKSYKMPCNVES-----AS---------------------------LHPKKEFFVAGGEDFKV 248 (334)
T ss_pred EecCceeEEeccccccceeeccCcccccc-----cc---------------------------ccCCCceEEecCcceEE
Confidence 55567899999998888877532222111 11 12333455554444 57
Q ss_pred EEEecccc------ccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCcc
Q 003360 494 CAYSLSHA------VQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELS 551 (826)
Q Consensus 494 rv~sl~~~------~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~ 551 (826)
+.|+..+- .+|+...++.++|. +.+..-+....||.|++|-.-..+
T Consensus 249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFS------------PdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFGPVHCVRFS------------PDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEeccCCceeeecccCCCCceEEEEEC------------CCCceeeccCCCceEEEEEecCCC
Confidence 77776531 23333344444443 556666777889999998654333
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.1e-18 Score=189.12 Aligned_cols=246 Identities=17% Similarity=0.192 Sum_probs=194.6
Q ss_pred CCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC
Q 003360 143 PKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS 221 (826)
Q Consensus 143 ~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~ 221 (826)
+...+++.++.+|.|.+|+...... . + ...+..++..|..-|..+...-+++.+++++ |-+|++|+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~----~-----~--s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSN----E-----P--STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAH 103 (735)
T ss_pred CCCceEEecCCCceEEEeccccccC----C-----c--ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecc
Confidence 3445899999999999998876310 1 1 1224566788999999999999999999988 9999999765
Q ss_pred CC--ceeecccccCCccee--e-CCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccc-cCCCCeEEEEEeCCC
Q 003360 222 VP--PLLDFETKLKDGSQS--H-SKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFS-LSGIPLTALYYDGTS 295 (826)
Q Consensus 222 ~~--~~~~~~~~h~g~V~~--~-s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~-~h~~~V~~l~fsp~~ 295 (826)
.. ........|+..|.| . .++..++|+|+-|+.|.+||+....-.++....+-...... ++..+|.+++..+.+
T Consensus 104 ~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 104 KDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred cCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence 43 222224679999999 4 77889999999999999999943321111222222122222 666899999999999
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEec
Q 003360 296 RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 296 ~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~ 375 (826)
..+++|+..+.+++||.++.... ++...|...|.+|-.++||+.+++|+.||+|++||+
T Consensus 184 t~ivsGgtek~lr~wDprt~~ki---------------------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRTCKKI---------------------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred eEEEecCcccceEEeccccccce---------------------eeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 99999999999999999865431 666688889999999999999999999999999999
Q ss_pred CCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 376 EGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
.+..|+++.. .|...|+++..++ +=.++++|+.||.|..=|+++.
T Consensus 243 gqQrCl~T~~---vH~e~VWaL~~~~------sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 243 GQQRCLATYI---VHKEGVWALQSSP------SFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred cccceeeeEE---eccCceEEEeeCC------CcceEEecCCCCcEEecccCCc
Confidence 9999997765 5677899999987 4688999999999999999874
No 86
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.81 E-value=4.8e-19 Score=171.76 Aligned_cols=229 Identities=14% Similarity=0.191 Sum_probs=181.8
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
.-++.+|.+.|+.+.+..+-...+++. |=+.++|+.-.. .+..| .|+.-|.+ |+.|.++|+||+.+..+||+|+
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 345689999999999988888777777 889999976443 34444 46666655 9999999999999999999999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc----cccceEEEeecCCCCeEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA----IENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~----~~~~~~~i~~s~~~~~~~ 336 (826)
..+... ..++.+|...|..+-||.....+++++.|++||+||.+++... ....+.++..+.+|..+.
T Consensus 130 n~p~Ap---------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 130 NRPKAP---------PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILT 200 (334)
T ss_pred cCCCCC---------chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEE
Confidence 555421 2345689999999999999999999999999999999988432 223445555556654433
Q ss_pred E--------EE------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeec
Q 003360 337 I--------HS------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 337 ~--------~~------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
+ +. ++....+..|.+...+|+..++++|++|+.++.||+.++.-+-. ...+|.++|.|+.|+|
T Consensus 201 ia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~--~nkgh~gpVhcVrFSP- 277 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS--YNKGHFGPVHCVRFSP- 277 (334)
T ss_pred EecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee--cccCCCCceEEEEECC-
Confidence 2 11 44455577799999999999999999999999999999987732 2468999999999999
Q ss_pred ccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 403 SLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 403 ~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
||...++|+.||+|++|....++.-
T Consensus 278 -----dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 278 -----DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred -----CCceeeccCCCceEEEEEecCCCch
Confidence 6999999999999999998866543
No 87
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.81 E-value=4.6e-18 Score=185.85 Aligned_cols=192 Identities=15% Similarity=0.179 Sum_probs=150.0
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
..+.+|.+.|+|++...++. +++|+ |.++++|..+. .... ..+|+..|++ +-|.+ .++||+.|.+||+|.. +
T Consensus 95 ~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~ 169 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-LVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-G 169 (745)
T ss_pred hhhhccccceeeeecCCcCc-eEecccccceEEecchh-hhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccC-C
Confidence 34789999999999888877 88899 99999996543 1111 3789999999 45555 8999999999999997 2
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.. ...|.+|.+-|+.|++-+++ .|++++.||.|++|++... .. +..
T Consensus 170 ~~-----------l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge------------------~l----~~~ 215 (745)
T KOG0301|consen 170 TL-----------LKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE------------------VL----LEM 215 (745)
T ss_pred ch-----------hhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCc------------------ee----eee
Confidence 22 22456899999999998875 5889999999999999521 11 455
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
..|...|.+++...+++.++++++|++++||+.. .|...... ....|+++.+-+ ..-+++|++||.|+
T Consensus 216 ~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l---PttsiWsa~~L~-------NgDIvvg~SDG~Vr 283 (745)
T KOG0301|consen 216 HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL---PTTSIWSAKVLL-------NGDIVVGGSDGRVR 283 (745)
T ss_pred eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec---CccceEEEEEee-------CCCEEEeccCceEE
Confidence 5677789999988888899999999999999986 55544432 233677777776 34488999999999
Q ss_pred EEECCC
Q 003360 423 VLDSDN 428 (826)
Q Consensus 423 iwd~~t 428 (826)
||....
T Consensus 284 VfT~~k 289 (745)
T KOG0301|consen 284 VFTVDK 289 (745)
T ss_pred EEEecc
Confidence 999773
No 88
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=3.2e-17 Score=178.75 Aligned_cols=413 Identities=11% Similarity=0.118 Sum_probs=256.1
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCcccccccccc--------ccccccccccCCCCCCcCC-eEEEEEeee
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECG--------TQITPICKLNLGYKLDKIP-ISSLKWVYA 83 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~p-I~~l~W~~~ 83 (826)
.....|+|- +..+|++|..+|.|++++..+-.-.-+...+ +...+-.+ .-.+...+-| .+.+.+...
T Consensus 260 TTnAnCIcV---s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~-~s~~~~a~fPD~IA~~Fdet 335 (1080)
T KOG1408|consen 260 TTNANCICV---SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPK-NSESSPAIFPDAIACQFDET 335 (1080)
T ss_pred ccccceeee---ecceEEEeeccceeeecCcchhhhccccccccccccchhhccccccc-ccccCcccCCceeEEEecCC
Confidence 335567774 5889999999999999999886222221111 01111111 1111111222 122222211
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCC---CCCCCCCCceEEEeccCccEEEe
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSS---SDPNKPKQDSFLLLGKSGHFYAF 160 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~---~~~~~~~~~~liv~~~~G~l~~~ 160 (826)
+ +-...||+.. .+.||.+...+.....-.-+.....+-|+..+|-. +....-....++..+++|.|.+|
T Consensus 336 ~--~klscVYndh------SlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 336 T--DKLSCVYNDH------SLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred C--ceEEEEEcCc------eEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 1 1112233322 34555554433322222334444555566666521 11111223346788889999999
Q ss_pred cchhH-----------HHHHhhcc--CCC--------CCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEe
Q 003360 161 DDCQI-----------ERYLLQYQ--SRS--------PPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLL 218 (826)
Q Consensus 161 d~~~i-----------~~~~~~~~--~~~--------~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w 218 (826)
|.... +.-++.-+ ... .+.+.+. -...-...-.|.+++.+|++++|++|. -|.+++|
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka-~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKA-LVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCccccc-chhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 87541 11000000 000 0000000 001111223589999999999999998 8999999
Q ss_pred ccCCCceeecccccCCccee--eC-C--CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC
Q 003360 219 AKSVPPLLDFETKLKDGSQS--HS-K--VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG 293 (826)
Q Consensus 219 ~~~~~~~~~~~~~h~g~V~~--~s-~--~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp 293 (826)
+...-....+...|...|.| ++ | ..++||+|+.|.-|.|+|+..... + ...+..|...|++|.|..
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~-l--------~qtld~HSssITsvKFa~ 557 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD-L--------VQTLDGHSSSITSVKFAC 557 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-h--------hhhhcccccceeEEEEee
Confidence 76654444445789999999 43 2 356999999999999999943321 1 334568999999999988
Q ss_pred CC--CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEE
Q 003360 294 TS--RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVY 371 (826)
Q Consensus 294 ~~--~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~ 371 (826)
.+ ..+++++.|..+ +|+...... ++.... +......+..+..|+..|..+++++++.|..|+
T Consensus 558 ~gln~~MiscGADksi-mFr~~qk~~-------------~g~~f~--r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 558 NGLNRKMISCGADKSI-MFRVNQKAS-------------SGRLFP--RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred cCCceEEEeccCchhh-heehhcccc-------------Cceecc--ccccccccceEEEeeeCCCcceEEEEecccceE
Confidence 87 789999999876 445432111 110000 000011155689999999999999999999999
Q ss_pred EEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEe
Q 003360 372 LLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQIL 451 (826)
Q Consensus 372 vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l 451 (826)
|||+.+++....+.-..+|.+....+...|. +.||++..+|.++.++|..+|+++.+..+|..... -+.++
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPS------giY~atScsdktl~~~Df~sgEcvA~m~GHsE~VT---G~kF~ 692 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPS------GIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVT---GVKFL 692 (1080)
T ss_pred EEeccccceeeeecccccCCCceEEEEECCC------ccEEEEeecCCceEEEEeccchhhhhhcCcchhee---eeeec
Confidence 9999999988777766677778888999984 99999999999999999999999988777765322 22222
Q ss_pred cCCCCcccCccccccccccCCCCCCCCCCC-CCEEEEeecCcEEEEeccc
Q 003360 452 NGQDGLARGANLSNVAGMNKGSPKENAVPK-QWFVLLCSEKAACAYSLSH 500 (826)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~se~~irv~sl~~ 500 (826)
++ ..++-+.+|+.|.||.|++
T Consensus 693 ----------------------------nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 ----------------------------NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ----------------------------ccchhheeecCCceEEEEECch
Confidence 22 3678888899999999985
No 89
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.3e-18 Score=180.90 Aligned_cols=223 Identities=18% Similarity=0.195 Sum_probs=163.2
Q ss_pred CCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc-
Q 003360 143 PKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK- 220 (826)
Q Consensus 143 ~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~- 220 (826)
+...+++.++-.|.||+|...+= . ....+..|-.+|||+.|+-|+.++++|+ |+.|.+|..
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG----------------~-LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSG----------------I-LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred CCceEEEeecccCcEEEEEeccc----------------c-HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 33455666669999999998761 1 1223578889999999999999999999 999999931
Q ss_pred ---------CCCceeecccccCCccee----eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeE
Q 003360 221 ---------SVPPLLDFETKLKDGSQS----HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLT 287 (826)
Q Consensus 221 ---------~~~~~~~~~~~h~g~V~~----~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~ 287 (826)
...++..+ ..|+-.|+. +.+...+++|++.|.++|+||++...+.. ++- ...+++
T Consensus 154 ~lv~a~~~~~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl--ti~---------fp~si~ 221 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL--TIT---------FPSSIK 221 (476)
T ss_pred eecccccCCCccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE--EEe---------cCCcce
Confidence 12233334 568989988 44455699999999999999997666422 222 236899
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC--CeEEEEEccCCCEEEEEe
Q 003360 288 ALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING--SIISLNMNRNSQHLAVGS 365 (826)
Q Consensus 288 ~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~--~V~~l~~s~~g~~lasGs 365 (826)
+++.+|-.+.+.+|+.+|.|.+.++..-.... ..+..-.+...+.+. ..+..|.+ +|+||+++-||.+|++|+
T Consensus 222 av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~-~~v~~k~~~~~~t~~----~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 222 AVALDPAERVVYIGTEEGKIFQNLLFKLSGQS-AGVNQKGRHEENTQI----NVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred eEEEcccccEEEecCCcceEEeeehhcCCccc-cccccccccccccee----eeeccccCCcceeEEEEecCccEEEeeC
Confidence 99999999999999999999998887543110 111111112223232 23344544 899999999999999999
Q ss_pred cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeec
Q 003360 366 DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 366 ~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
.||.|+|||+.+.+|+.+.. ...++|+.+.+.|.
T Consensus 297 ~dg~VcvWdi~S~Q~iRtl~---~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 297 EDGKVCVWDIYSKQCIRTLQ---TSKGPVTNLQINPL 330 (476)
T ss_pred CCCCEEEEecchHHHHHHHh---hhccccceeEeecc
Confidence 99999999999999884332 25668888888773
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=1.3e-17 Score=174.89 Aligned_cols=242 Identities=14% Similarity=0.200 Sum_probs=183.9
Q ss_pred CceEEEeccCccEEEecchhHHH--HHhhccCCCCCCCCccceeee--cccCCCEEEEEEeeCCCeEEEec-CCcEEEec
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIER--YLLQYQSRSPPSAPKEVMLKM--PFLDSSITAMKLITGNSFILSSA-DEDYSLLA 219 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~--~~~~~~~~~~~~~~~~~~~~l--~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~ 219 (826)
+.+.+-.+.+|.|.-|+..+-.. +........ .....+... ..|...|.+++.++|++++++|+ |..|.+|+
T Consensus 154 ~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~---k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~ 230 (479)
T KOG0299|consen 154 DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVL---KSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWD 230 (479)
T ss_pred ccceeecCCCcceeeeehhcCcccccccccchhh---hhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEec
Confidence 35667777888888887554211 111110000 001111112 37889999999999999999999 99999997
Q ss_pred cCCC-ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCC
Q 003360 220 KSVP-PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR 296 (826)
Q Consensus 220 ~~~~-~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~ 296 (826)
.... +...+ .+|.+.|.+ |.....-|.+++.|++|++|++..... ...+-+|...|..|.-..-.+
T Consensus 231 ~~t~ehv~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~----------vetlyGHqd~v~~IdaL~reR 299 (479)
T KOG0299|consen 231 CDTLEHVKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY----------VETLYGHQDGVLGIDALSRER 299 (479)
T ss_pred Ccccchhhcc-cccccceeeeeeecCccceeeeecCCceEEEehhHhHH----------HHHHhCCccceeeechhcccc
Confidence 6553 33334 789999988 777777899999999999999944331 223457889999999988899
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~ 376 (826)
.+.+|+.|.++++|++.. ..+ +.+..+.+.+-|++|-.+. ++++|++||.|.+|++.
T Consensus 300 ~vtVGgrDrT~rlwKi~e-----------------esq-----lifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 300 CVTVGGRDRTVRLWKIPE-----------------ESQ-----LIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLL 356 (479)
T ss_pred eEEeccccceeEEEeccc-----------------cce-----eeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeec
Confidence 999999999999999952 223 5666778889999998765 79999999999999999
Q ss_pred CCeeEEeeecccCC---------CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 377 GPTVLYQKHIASDI---------SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 377 ~~~~l~~~~~~~~~---------~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
..+.+|+....++. ..+|++++..+. ++++++|+.+|.|++|-...|
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~------sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG------SDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEeccc------CceEEecCCCCceEEEEecCC
Confidence 99999887765442 127889998884 899999999999999999877
No 91
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=7.5e-18 Score=162.33 Aligned_cols=234 Identities=14% Similarity=0.142 Sum_probs=181.9
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
..+.+...++..+.+|+...- -...+..+|...|..++.+.|...+++++ |..+.+|+..+.
T Consensus 29 GnY~ltcGsdrtvrLWNp~rg-----------------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 29 GNYCLTCGSDRTVRLWNPLRG-----------------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred CCEEEEcCCCceEEeeccccc-----------------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence 356678888899999987550 12233578889999999999999999987 999999987665
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
.....-.+|.+.|.. |..+...+++|+.|.++|+||-......|+..+. .....|.+|..+ ...++.|
T Consensus 92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild--------ea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD--------EAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh--------hhcCceeEEEec--ccEEEee
Confidence 554443789999999 9999999999999999999999555544433333 344688888775 4689999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
+.||++|.||++.+... .--...+|+|++|+++++.+++++.|+++++.|-.+++++
T Consensus 162 S~DGtvRtydiR~G~l~-----------------------sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLS-----------------------SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred ccCCcEEEEEeecceee-----------------------hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 99999999999955331 1123568999999999999999999999999999999988
Q ss_pred EeeecccCCCCCeeEE--EEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 382 YQKHIASDISSGIVSL--QFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl--~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
.. ..+|...-..+ ++.. ...++++|+.||.|++||+..+..+..+..
T Consensus 219 ~s---YkGhkn~eykldc~l~q------sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 219 KS---YKGHKNMEYKLDCCLNQ------SDTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred HH---hcccccceeeeeeeecc------cceeEEeccCCceEEEEEeccceeeeeecc
Confidence 32 23554433333 3333 367899999999999999998888876543
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2.2e-17 Score=165.66 Aligned_cols=239 Identities=16% Similarity=0.246 Sum_probs=178.5
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCC--EEEEEECCCcEEEEe
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN--LFITGHSDGAINFWD 259 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~--~l~Tgs~DGtVriWD 259 (826)
.+..+.|.++|++++. +++++++|+ |++|++|+............|.|.|++ |.+... .|++|+.||.|.+|+
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 3456889999999976 589999998 999999976654333333679999999 776654 899999999999999
Q ss_pred C-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 260 V-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 260 ~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
. +-.. +.. +..|...|+.|+.+|.+++-++-+.|+.+++|++.++...
T Consensus 114 ~~~W~~---~~s--------lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a-------------------- 162 (362)
T KOG0294|consen 114 VGSWEL---LKS--------LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA-------------------- 162 (362)
T ss_pred cCCeEE---eee--------ecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc--------------------
Confidence 8 4322 233 3478888999999999999999999999999999865431
Q ss_pred EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 339 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
.........+.+.|+|.|.+++++..++ |-+|.+....+..... ....+.++.|.. +..|++|+.|
T Consensus 163 --~v~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~----~~~r~l~~~~l~-------~~~L~vG~d~ 228 (362)
T KOG0294|consen 163 --FVLNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIE----NPKRILCATFLD-------GSELLVGGDN 228 (362)
T ss_pred --eeeccCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhh----ccccceeeeecC-------CceEEEecCC
Confidence 1122233455699999999999998885 6899998776652221 112356666664 8999999999
Q ss_pred CcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCC-CEEEEeecCcEEEEe
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQ-WFVLLCSEKAACAYS 497 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vv~~se~~irv~s 497 (826)
+.|++||...+.+...+..|.+ ++-.|.++.. +.. -++.+++|+.|+||+
T Consensus 229 ~~i~~~D~ds~~~~~~~~AH~~---RVK~i~~~~~--------------------------~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 229 EWISLKDTDSDTPLTEFLAHEN---RVKDIASYTN--------------------------PEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred ceEEEeccCCCccceeeecchh---heeeeEEEec--------------------------CCceEEEEeccCceEEEEE
Confidence 9999999998888877766654 3334444321 111 355566888999999
Q ss_pred cc
Q 003360 498 LS 499 (826)
Q Consensus 498 l~ 499 (826)
+.
T Consensus 280 ~~ 281 (362)
T KOG0294|consen 280 ID 281 (362)
T ss_pred cc
Confidence 97
No 93
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.80 E-value=6.2e-18 Score=184.86 Aligned_cols=274 Identities=14% Similarity=0.161 Sum_probs=203.0
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceee--cccccCCccee---eC-CCCCEEEEEECCCcEEE
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLD--FETKLKDGSQS---HS-KVKNLFITGHSDGAINF 257 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~--~~~~h~g~V~~---~s-~~~~~l~Tgs~DGtVri 257 (826)
...+.+|++.|..+++.+. -.+++++ |+++++|......... ...+|.+-|.+ +. .++-.|++|+.|++|.+
T Consensus 7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 3457899999988876554 4677777 9999999764433332 12456666655 33 45557999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
|..++.. +++.++ +|...|.+++...++. +++||+|.++++|....-.
T Consensus 86 ~~~~~~~--P~~~Lk--------gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~--------------------- 133 (745)
T KOG0301|consen 86 FKLSQAE--PLYTLK--------GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV--------------------- 133 (745)
T ss_pred EecCCCC--chhhhh--------ccccceeeeecCCcCc-eEecccccceEEecchhhh---------------------
Confidence 9996665 344444 8999999999777776 9999999999999986211
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
.....|+..|.++++-|.+ .+++|+.|.+|++|.- ++++.++ .+|.+.|..+++.+ +..+++|++
T Consensus 134 --~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf---~gHtD~VRgL~vl~-------~~~flScsN 198 (745)
T KOG0301|consen 134 --YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTF---SGHTDCVRGLAVLD-------DSHFLSCSN 198 (745)
T ss_pred --cccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhh---ccchhheeeeEEec-------CCCeEeecC
Confidence 2345678889999999988 7999999999999975 5666333 58999999999987 677999999
Q ss_pred CCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC-cEEEE
Q 003360 418 DSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AACAY 496 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~-~irv~ 496 (826)
||.|+.|++ +|+++..+.+|.+. +.++.. ...+++++.|+|+ .+|||
T Consensus 199 Dg~Ir~w~~-~ge~l~~~~ghtn~---vYsis~----------------------------~~~~~~Ivs~gEDrtlriW 246 (745)
T KOG0301|consen 199 DGSIRLWDL-DGEVLLEMHGHTNF---VYSISM----------------------------ALSDGLIVSTGEDRTLRIW 246 (745)
T ss_pred CceEEEEec-cCceeeeeeccceE---EEEEEe----------------------------cCCCCeEEEecCCceEEEe
Confidence 999999999 58888876666543 233321 1234677777775 89999
Q ss_pred eccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccC
Q 003360 497 SLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 497 sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP 548 (826)
+-. .+.....+. ..|+|.+.+-. ++ -+++...||.|+|++..
T Consensus 247 ~~~-------e~~q~I~lP-ttsiWsa~~L~-Ng-DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 247 KKD-------ECVQVITLP-TTSIWSAKVLL-NG-DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred ecC-------ceEEEEecC-ccceEEEEEee-CC-CEEEeccCceEEEEEec
Confidence 876 244445444 67888765442 22 25778899999999865
No 94
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-16 Score=160.96 Aligned_cols=209 Identities=11% Similarity=0.135 Sum_probs=151.5
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeC-C
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDV-S 261 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~-s 261 (826)
+..-.++|...|+.++.+|.+..+++++ |++|++|+.+.+.......-...++.+|.|.|-++|+|.....|++||+ +
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecc
Confidence 4445799999999999999999999999 9999999877543333312222334449999999999998889999999 3
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
... .|..++..+ .......+.|.|+|+|+.++.+...+.+.+.|--.+...+ . ..
T Consensus 172 ~dk-gPF~tf~i~-----~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~-----t--------------fs 226 (311)
T KOG1446|consen 172 FDK-GPFTTFSIT-----DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS-----T--------------FS 226 (311)
T ss_pred cCC-CCceeEccC-----CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee-----e--------------Ee
Confidence 211 011112111 1233688999999999999999999999999977543211 0 11
Q ss_pred EeeccCC-eEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 342 VMKINGS-IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 342 ~~~~~~~-V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
.....+. -...+|+||+++|++|+.||+|.+|+++++..+.... ..+..++.++.|.|. +...++.+..
T Consensus 227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~--~~~~~~~~~~~fnP~--------~~mf~sa~s~ 296 (311)
T KOG1446|consen 227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR--GPNGGPVSCVRFNPR--------YAMFVSASSN 296 (311)
T ss_pred eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec--CCCCCCccccccCCc--------eeeeeecCce
Confidence 1111111 2566899999999999999999999999999885554 237889999999883 4555666778
Q ss_pred EEEEECC
Q 003360 421 VLVLDSD 427 (826)
Q Consensus 421 V~iwd~~ 427 (826)
+.+|=..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 8888665
No 95
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.79 E-value=6.9e-18 Score=193.83 Aligned_cols=319 Identities=12% Similarity=0.079 Sum_probs=206.0
Q ss_pred ccee--eCCCCCEEEEEE--CCCcEEEEeCCCC--ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003360 235 GSQS--HSKVKNLFITGH--SDGAINFWDVSCP--LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVR 308 (826)
Q Consensus 235 ~V~~--~s~~~~~l~Tgs--~DGtVriWD~s~~--~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~ 308 (826)
.|.+ .+|++..++||+ .||.++||+...- ........-..-.....-|...|+|+.|+|||++||+|++|+.|.
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~ 94 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM 94 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence 3445 899999999999 9999999997211 100000000011223456789999999999999999999999999
Q ss_pred EEEeCCCCCccccceEEEeecCCCCe-EEEEE--EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNS-HIIHS--VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~-~~~~~--~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
||..... ....+-++..+.. +.-+. ..+..|.+.|..++|+|++.+||+++.|++|.|||.++..++..
T Consensus 95 iW~~~~~------~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v-- 166 (942)
T KOG0973|consen 95 IWERAEI------GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV-- 166 (942)
T ss_pred Eeeeccc------CCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee--
Confidence 9998731 0000111111111 00000 45567899999999999999999999999999999999977633
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC-CCcceEEEEecCCCCcccCcccc
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK-PSRALFMQILNGQDGLARGANLS 464 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~-~~~~lsi~~l~~~~~~~~~~~~~ 464 (826)
..+|.+.|..+.|.|. |+++++-+.|++|+||...+-.+.++...+-.. +...+... +
T Consensus 167 -l~~H~s~VKGvs~DP~------Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~R-l------------- 225 (942)
T KOG0973|consen 167 -LRGHQSLVKGVSWDPI------GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLR-L------------- 225 (942)
T ss_pred -eecccccccceEECCc------cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeee-c-------------
Confidence 3589999999999996 999999999999999997765565554222221 11111110 1
Q ss_pred ccccccCCCCCCCCCCCCCEEEEee-----cCcEEEE-----eccccccccceeeeeeecCCCCceeeEeeee-------
Q 003360 465 NVAGMNKGSPKENAVPKQWFVLLCS-----EKAACAY-----SLSHAVQGVKKVLYKKKFHSSSCCWASTFYS------- 527 (826)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~vv~~s-----e~~irv~-----sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~------- 527 (826)
.|+|++.|+.+.. -..+.|+ +..-.+-|+++.+..+.|+++.. -.....
T Consensus 226 ------------SWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lf--e~~~~ng~~~~~~ 291 (942)
T KOG0973|consen 226 ------------SWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLF--ERNNKNGTSTQPN 291 (942)
T ss_pred ------------ccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHh--ccccccCCccCCC
Confidence 2444444443321 1122222 21112335555555555542211 111110
Q ss_pred CCceEEEEEEeeceEEEeccCCccccccc------cccceeecCCCCCCCcccceeccCCCcEEEEcCCeeeeeeeeccc
Q 003360 528 GSDVGLMLLFTSGKFEIRSLPELSLLKET------SIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFISALRQ 601 (826)
Q Consensus 528 ~~~~~lv~~~~~G~I~i~slP~L~~l~~~------sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e~~~~~~~~~ 601 (826)
..-+++++..+|+.|-||+.-..|++... +++.+.+. +++...+.||.||.+.+..-+++-+. -.+.+
T Consensus 292 ~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWs-----pdG~~LfacS~DGtV~~i~Fee~ElG-~~ls~ 365 (942)
T KOG0973|consen 292 CYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWS-----PDGFSLFACSLDGTVALIHFEEKELG-VALSE 365 (942)
T ss_pred cceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEc-----CCCCeEEEEecCCeEEEEEcchHHhC-cccCh
Confidence 01247788899999999998888887654 67778888 68899999999999988875443333 34444
Q ss_pred C
Q 003360 602 R 602 (826)
Q Consensus 602 ~ 602 (826)
|
T Consensus 366 e 366 (942)
T KOG0973|consen 366 E 366 (942)
T ss_pred h
Confidence 4
No 96
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.79 E-value=4.1e-17 Score=159.68 Aligned_cols=273 Identities=13% Similarity=0.229 Sum_probs=184.2
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceE
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 90 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~l 90 (826)
.+-+.+.++||.+ +|..||+|..|+++.+|++.-..... .+.+..+...|-.+.|..
T Consensus 18 ~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~--------------~~~~~gh~~svdql~w~~-------- 74 (313)
T KOG1407|consen 18 GHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRK--------------ELVYRGHTDSVDQLCWDP-------- 74 (313)
T ss_pred hhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhh--------------hhcccCCCcchhhheeCC--------
Confidence 3567899999976 99999999999999999887641100 011112222222232322
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHh
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~ 170 (826)
.+++.+++...+..+.+||...-
T Consensus 75 ----------------------------------------------------~~~d~~atas~dk~ir~wd~r~~----- 97 (313)
T KOG1407|consen 75 ----------------------------------------------------KHPDLFATASGDKTIRIWDIRSG----- 97 (313)
T ss_pred ----------------------------------------------------CCCcceEEecCCceEEEEEeccC-----
Confidence 12233455556667778887661
Q ss_pred hccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcce-e-eCCCCCEEE
Q 003360 171 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQ-S-HSKVKNLFI 247 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~-~-~s~~~~~l~ 247 (826)
++... +...... -.+.|+|+|.+++.+. |..|.+.+.+......- ....-.+. . |+-++++++
T Consensus 98 -----------k~~~~-i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~-~~~~~e~ne~~w~~~nd~Ff 163 (313)
T KOG1407|consen 98 -----------KCTAR-IETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNE-EQFKFEVNEISWNNSNDLFF 163 (313)
T ss_pred -----------cEEEE-eeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeeh-hcccceeeeeeecCCCCEEE
Confidence 11111 1111122 2456999999999998 77777665443222211 11111222 2 667777777
Q ss_pred EEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEe
Q 003360 248 TGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFT 327 (826)
Q Consensus 248 Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~ 327 (826)
.-...|+|.|-... .+.++. .++.|.....||.|+|+|++||+|+.|..|.+||+..--+.
T Consensus 164 lt~GlG~v~ILsyp--sLkpv~--------si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~--------- 224 (313)
T KOG1407|consen 164 LTNGLGCVEILSYP--SLKPVQ--------SIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE--------- 224 (313)
T ss_pred EecCCceEEEEecc--cccccc--------ccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhh---------
Confidence 77778999998763 433333 34589899999999999999999999999999999732221
Q ss_pred ecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCC
Q 003360 328 GSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF 407 (826)
Q Consensus 328 ~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~ 407 (826)
-.+..+.-+|..|.||.+|++||+||+|..|-|=++.+|..++..+ +.++...++|+|.
T Consensus 225 ------------R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~----~~~~t~tVAWHPk----- 283 (313)
T KOG1407|consen 225 ------------RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP----CEGPTFTVAWHPK----- 283 (313)
T ss_pred ------------eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee----ccCCceeEEecCC-----
Confidence 2234557789999999999999999999999999999999886664 5678889999994
Q ss_pred CCcEEEEEECC
Q 003360 408 EKNFLVIATKD 418 (826)
Q Consensus 408 d~~~l~sgs~D 418 (826)
..+|+.+..|
T Consensus 284 -~~LLAyA~dd 293 (313)
T KOG1407|consen 284 -RPLLAYACDD 293 (313)
T ss_pred -CceeeEEecC
Confidence 6777776655
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=6.3e-18 Score=168.56 Aligned_cols=239 Identities=16% Similarity=0.252 Sum_probs=171.2
Q ss_pred CCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCC-CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCE
Q 003360 283 GIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYE-PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQH 360 (826)
Q Consensus 283 ~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~-~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 360 (826)
.+.|.+|+|+| ...+++.||.||+||+|++... .... -....|.++|.+++|+.+|..
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--------------------ka~~~~~~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--------------------KAQQSHDGPVLDVCWSDDGSK 86 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc--------------------hhhhccCCCeEEEEEccCCce
Confidence 37899999999 4567779999999999999843 1110 122346889999999999999
Q ss_pred EEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCC
Q 003360 361 LAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPK 440 (826)
Q Consensus 361 lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~ 440 (826)
+++|+.|+.+++||+.++++... ..|..+|..+.|.+.. ...+|++|++|.+|+.||.+....+.++ .
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~~v----~~Hd~pvkt~~wv~~~----~~~cl~TGSWDKTlKfWD~R~~~pv~t~----~ 154 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVSQV----AAHDAPVKTCHWVPGM----NYQCLVTGSWDKTLKFWDTRSSNPVATL----Q 154 (347)
T ss_pred EEeeccCCceEEEEccCCCeeee----eecccceeEEEEecCC----CcceeEecccccceeecccCCCCeeeee----e
Confidence 99999999999999999976622 3689999999998841 2468999999999999999988887663 3
Q ss_pred CCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCce
Q 003360 441 KPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCC 520 (826)
Q Consensus 441 ~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~ 520 (826)
.|.++.++..+. .-++|+++++.|.+|+|.+.....+......|+. ..|.
T Consensus 155 LPeRvYa~Dv~~-----------------------------pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q-~R~v 204 (347)
T KOG0647|consen 155 LPERVYAADVLY-----------------------------PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQ-TRCV 204 (347)
T ss_pred ccceeeehhccC-----------------------------ceeEEEecCCcEEEEEcCCCcchhhhhcCcccce-eeEE
Confidence 345555554432 2478889999999999975333333333334443 3333
Q ss_pred eeEeeeeCCceEEEEEEeeceEEEeccCCcccccccc----------------ccceeecCCCCCCCcccceeccCCCcE
Q 003360 521 WASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETS----------------IRGFVYLTPKPNSLSNTLMCSSWDGEL 584 (826)
Q Consensus 521 ~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~s----------------l~~~~~~~~~~~~~~~~~~~~s~~G~i 584 (826)
. .+ ....+.++..-.|.+.|+.+.+-.+-..++ +..+.|+ +.....+++.+||..
T Consensus 205 a--~f--~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh-----P~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 205 A--CF--QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH-----PVHGTLVTAGSDGTF 275 (347)
T ss_pred E--EE--ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee-----cccceEEEecCCceE
Confidence 2 22 244555788889999999988754422222 2245565 455567777778888
Q ss_pred EEEcCCee
Q 003360 585 IMVNGNQE 592 (826)
Q Consensus 585 ~~~~g~~e 592 (826)
-.|.-+..
T Consensus 276 ~FWDkdar 283 (347)
T KOG0647|consen 276 SFWDKDAR 283 (347)
T ss_pred EEecchhh
Confidence 88877655
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.79 E-value=3e-17 Score=160.67 Aligned_cols=227 Identities=14% Similarity=0.163 Sum_probs=168.5
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec--ccccCCccee--eC-CCCCEEEEEECCCcEEEEeC-
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF--ETKLKDGSQS--HS-KVKNLFITGHSDGAINFWDV- 260 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~--~~~h~g~V~~--~s-~~~~~l~Tgs~DGtVriWD~- 260 (826)
...|...|..++|+.+|..+++++ |+++++|+.....+..- ..+|.+.|-. |+ +...+++|++.|.+||+||+
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 467888999999999999999998 99999996543221111 3568877766 44 56679999999999999999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccc----eEEEeecCCC----
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENS----FLSFTGSKKG---- 332 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~----~~~i~~s~~~---- 332 (826)
+++.. ..+.. ...=.-+.|+|++.++++|+.|..|.+.|.++....++.. ...+.++.++
T Consensus 96 ~~k~~---~~i~~---------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ff 163 (313)
T KOG1407|consen 96 SGKCT---ARIET---------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFF 163 (313)
T ss_pred cCcEE---EEeec---------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEE
Confidence 55442 11221 1223467899999999999999999999998774322221 1222332111
Q ss_pred -----CeEEEEE------E-EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 333 -----NSHIIHS------V-KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 333 -----~~~~~~~------~-~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
.+..+-. + ....|+....|+.|+|+|+++|+|+.|-.|.+||+...-|+..+ ..+.-||..+.|+
T Consensus 164 lt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i---sRldwpVRTlSFS 240 (313)
T KOG1407|consen 164 LTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI---SRLDWPVRTLSFS 240 (313)
T ss_pred EecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee---ccccCceEEEEec
Confidence 1111111 1 12345677999999999999999999999999999887777333 4788899999999
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
. |+++|++|+.|..|-|=+..||..+...
T Consensus 241 ~------dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 241 H------DGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred c------CcceeeccCccceEEeEecccCCeEEEe
Confidence 8 7999999999999999999999887663
No 99
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=6.8e-16 Score=168.96 Aligned_cols=311 Identities=13% Similarity=0.105 Sum_probs=202.4
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC---ceeeccc----ccCCccee--eCCCCCEEEEEECCCcEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP---PLLDFET----KLKDGSQS--HSKVKNLFITGHSDGAINF 257 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~---~~~~~~~----~h~g~V~~--~s~~~~~l~Tgs~DGtVri 257 (826)
+.+|+.-|..+.|+|.+..|++++ |.++.+|..... +...+.. +..+|.++ |+|+++.+++-+.-|..++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 348999999999999998888888 999999965432 4433322 23445555 9999999999999999999
Q ss_pred EeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC---------CCccccce----
Q 003360 258 WDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE---------PHAIENSF---- 323 (826)
Q Consensus 258 WD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~---------~~~~~~~~---- 323 (826)
|-. ......+ ...+.+|-..|+.|+|+|.|.+|++.+.|-+-|||---.. +..|.-.+
T Consensus 343 Wkt~d~~~w~~--------~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~ 414 (764)
T KOG1063|consen 343 WKTKDKTFWTQ--------EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLS 414 (764)
T ss_pred EeccCccceee--------ccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeee
Confidence 994 2222111 2335688899999999999999999999999999854311 11111111
Q ss_pred ------EEEeec--------------------------------CCCCeEEEEE--------------------------
Q 003360 324 ------LSFTGS--------------------------------KKGNSHIIHS-------------------------- 339 (826)
Q Consensus 324 ------~~i~~s--------------------------------~~~~~~~~~~-------------------------- 339 (826)
.++.+. +++......+
T Consensus 415 ~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~ 494 (764)
T KOG1063|consen 415 FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA 494 (764)
T ss_pred hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence 111100 0000000000
Q ss_pred ------------------------EEEeeccCCeEEEEEccCCCEEEEEecC-----CeEEEEecCCCeeEEeeecccCC
Q 003360 340 ------------------------VKVMKINGSIISLNMNRNSQHLAVGSDQ-----GYVYLLDTEGPTVLYQKHIASDI 390 (826)
Q Consensus 340 ------------------------~~~~~~~~~V~~l~~s~~g~~lasGs~d-----G~V~vwD~~~~~~l~~~~~~~~~ 390 (826)
.+...|.-.|++++.+|+|+++|+++.. -.|++|+..+-...+.. ..|
T Consensus 495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L---~~H 571 (764)
T KOG1063|consen 495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL---EGH 571 (764)
T ss_pred cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee---ccc
Confidence 1222334459999999999999999864 45899998876655322 489
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec-cCCCCCcceEEEEecCCCCcccCccccccccc
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI-HPKKPSRALFMQILNGQDGLARGANLSNVAGM 469 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~-~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~ 469 (826)
+-.|+.++|+| |+.+|++.+.|.++.+|....+... .+.+ ..+...+++ .++
T Consensus 572 sLTVT~l~FSp------dg~~LLsvsRDRt~sl~~~~~~~~~-e~~fa~~k~HtRII----Wdc---------------- 624 (764)
T KOG1063|consen 572 SLTVTRLAFSP------DGRYLLSVSRDRTVSLYEVQEDIKD-EFRFACLKAHTRII----WDC---------------- 624 (764)
T ss_pred ceEEEEEEECC------CCcEEEEeecCceEEeeeeecccch-hhhhccccccceEE----EEc----------------
Confidence 99999999999 7999999999999999997533211 1100 011112222 111
Q ss_pred cCCCCCCCCCCCCCE-EEEeecCcEEEEeccccccccceeeee---eecCCCCceee----EeeeeCCceEEEEEEeece
Q 003360 470 NKGSPKENAVPKQWF-VLLCSEKAACAYSLSHAVQGVKKVLYK---KKFHSSSCCWA----STFYSGSDVGLMLLFTSGK 541 (826)
Q Consensus 470 ~~~~~~~~~~~~~~~-vv~~se~~irv~sl~~~~~g~~k~~~k---~~~~~~~c~~~----~~~~~~~~~~lv~~~~~G~ 541 (826)
.|.|++.+ +.++-|+.++||..+.. ..+.+.+ .++ ..|..+ .+++.....++++.+.+|+
T Consensus 625 -------sW~pde~~FaTaSRDK~VkVW~~~~~---~d~~i~~~a~~~~--~~aVTAv~~~~~~~~e~~~~vavGle~Ge 692 (764)
T KOG1063|consen 625 -------SWSPDEKYFATASRDKKVKVWEEPDL---RDKYISRFACLKF--SLAVTAVAYLPVDHNEKGDVVAVGLEKGE 692 (764)
T ss_pred -------ccCcccceeEEecCCceEEEEeccCc---hhhhhhhhchhcc--CCceeeEEeeccccccccceEEEEecccE
Confidence 46677664 44455678999999832 1133333 222 223322 2222255678899999999
Q ss_pred EEEeccC
Q 003360 542 FEIRSLP 548 (826)
Q Consensus 542 I~i~slP 548 (826)
|.++..+
T Consensus 693 I~l~~~~ 699 (764)
T KOG1063|consen 693 IVLWRRK 699 (764)
T ss_pred EEEEecc
Confidence 9999877
No 100
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.1e-16 Score=158.19 Aligned_cols=239 Identities=13% Similarity=0.221 Sum_probs=177.0
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec---CCcEEEeccCC
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA---DEDYSLLAKSV 222 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~---d~~i~~w~~~~ 222 (826)
..+++.+.+..|.+||...- . ..-++..+.-.|..++|......++.++ |.+||......
T Consensus 27 ~~litss~dDsl~LYd~~~g----------------~-~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 27 LLLITSSEDDSLRLYDSLSG----------------K-QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CEEEEecCCCeEEEEEcCCC----------------c-eeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 44566677779999998761 1 1223455556788888877666666554 77888886555
Q ss_pred CceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE
Q 003360 223 PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300 (826)
Q Consensus 223 ~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las 300 (826)
.....+-.+|+..|.+ .+|-++.+++++.|++||+||+.....+-+..+ ..-...+|.|+|.++|+
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------------~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------------SGRPIAAFDPEGLIFAL 157 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec------------CCCcceeECCCCcEEEE
Confidence 4555555899999999 899999999999999999999953332111111 23346789999999999
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~ 379 (826)
|.....|+|||++.-... .+.. .... ......+.|.|||+|+.++.++..+.+++.|.-.|.
T Consensus 158 ~~~~~~IkLyD~Rs~dkg---PF~t--------------f~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKG---PFTT--------------FSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT 220 (311)
T ss_pred ecCCCeEEEEEecccCCC---Ccee--------------EccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc
Confidence 999999999999843221 0110 1111 224568999999999999999999999999999999
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
++.++........-..+..|.| |++++++|+.||+|.+|++++|..+..+.
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftP------ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTP------DSKFVLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred EeeeEeeccCCCCcceeEEECC------CCcEEEEecCCCcEEEEEcCCCcEeeEec
Confidence 8877765433332335677888 79999999999999999999999988753
No 101
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.78 E-value=5.1e-16 Score=173.06 Aligned_cols=248 Identities=15% Similarity=0.213 Sum_probs=183.7
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc---
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK--- 220 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~--- 220 (826)
.+.+..+...|.+.+||+.. .+.-.+....|.+.|+...|-+..+.+++++ |..+++|.-
T Consensus 257 ~p~las~~~~G~m~~wDLe~----------------kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 257 NPLLASGRSNGDMAFWDLEK----------------KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred CeeEEeccCCceEEEEEcCC----------------CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 34556666779999999987 1222333468899999999999999999988 999999932
Q ss_pred -CCCceeecccccCCccee--eC-CCCCEEEEEECCCcEEEEeCCC----Cceee----------------------eee
Q 003360 221 -SVPPLLDFETKLKDGSQS--HS-KVKNLFITGHSDGAINFWDVSC----PLFLL----------------------ILS 270 (826)
Q Consensus 221 -~~~~~~~~~~~h~g~V~~--~s-~~~~~l~Tgs~DGtVriWD~s~----~~~~~----------------------i~~ 270 (826)
+.+.++.+..+|..+-.+ |. ..+..+.+++.|++.|.+++.. +.+.. +..
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 235566667889888888 44 7888999999999988887511 11100 000
Q ss_pred c----------------------------ccccc-------cccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 271 L----------------------------KQQSE-------KDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 271 l----------------------------~~~~~-------~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
+ +.... ..+......+++++.++-|++.+.|...|+|-+|++..+
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 0 00000 001112267899999999999999999999999999854
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEE---eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeec------
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKV---MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI------ 386 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~---~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~------ 386 (826)
-.. ..+ ..|.++|+.++...-++.+++++.+|.+.+||......+....+
T Consensus 481 i~r---------------------~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~ 539 (910)
T KOG1539|consen 481 IHR---------------------KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITG 539 (910)
T ss_pred eee---------------------cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcce
Confidence 221 222 35688999999999999999999999999999977653321111
Q ss_pred --------------------------------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 387 --------------------------------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 387 --------------------------------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
..+|...|+.++|+| ||.+|++++.|++|++||+.+|.++-.
T Consensus 540 iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~------DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 540 IVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP------DGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred eeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC------CCcEEEEeecCCcEEEEeccCcceeee
Confidence 256888999999999 799999999999999999999999876
Q ss_pred e
Q 003360 435 N 435 (826)
Q Consensus 435 ~ 435 (826)
+
T Consensus 614 ~ 614 (910)
T KOG1539|consen 614 L 614 (910)
T ss_pred E
Confidence 4
No 102
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=7.2e-18 Score=164.31 Aligned_cols=200 Identities=17% Similarity=0.279 Sum_probs=156.7
Q ss_pred CCCEEEEEEeeCCCeEE-Eec-CCcEEEeccCC--CceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCc
Q 003360 192 DSSITAMKLITGNSFIL-SSA-DEDYSLLAKSV--PPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPL 264 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~~--~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~ 264 (826)
...+..++++++....+ +++ ||.+++|+... .++..+ ..|+..|.+ |.+ +++.+++++.||+||+||...+.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 45788899998765544 344 99999997543 244444 679999988 655 56688899999999999984433
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
- +.++.+|...|....|+|. ..+|+++|.||++++||++.. |.. +...
T Consensus 139 S----------v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~----------------gk~-----~~i~ 187 (311)
T KOG0277|consen 139 S----------VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP----------------GKF-----MSIE 187 (311)
T ss_pred c----------eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC----------------Cce-----eEEE
Confidence 1 3346789999999999995 579999999999999999832 222 3355
Q ss_pred eccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 344 KINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 344 ~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
.|...|.|+.|+. +...|++|+.|+.|++||++.-+.. .....+|.-.|..+.|+|. ....|++++-|-+++
T Consensus 188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p--l~eL~gh~~AVRkvk~Sph-----~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP--LFELNGHGLAVRKVKFSPH-----HASLLASASYDMTVR 260 (311)
T ss_pred eccceeEeecccccCCcEEEecCCCceEEEEehhhcccc--ceeecCCceEEEEEecCcc-----hhhHhhhccccceEE
Confidence 5677899999986 5568999999999999999876543 2233689999999999996 467899999999999
Q ss_pred EEECCCCc
Q 003360 423 VLDSDNGN 430 (826)
Q Consensus 423 iwd~~tg~ 430 (826)
|||...+.
T Consensus 261 iw~~~~~d 268 (311)
T KOG0277|consen 261 IWDPERQD 268 (311)
T ss_pred ecccccch
Confidence 99998554
No 103
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.8e-15 Score=163.14 Aligned_cols=286 Identities=15% Similarity=0.158 Sum_probs=191.9
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
..+|+|+++.+ ..+.||++-+||.|.||++... +.....+.. .....|-.+.|+ ++++||-
T Consensus 25 Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~-------------w~~~~vi~g-~~drsIE~L~W~----e~~RLFS 85 (691)
T KOG2048|consen 25 PSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNN-------------WFLEPVIHG-PEDRSIESLAWA----EGGRLFS 85 (691)
T ss_pred ccceEEEEEec-cCCceeeeccCCcEEEEccCCC-------------ceeeEEEec-CCCCceeeEEEc----cCCeEEe
Confidence 67999999954 8888999999999999999875 111111111 334468899998 4789999
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
.|.... +.-++-.+..+....+ ...+.+-.+.+-+. +..+.+++.+|.++.++.+.-
T Consensus 86 ~g~sg~-------i~EwDl~~lk~~~~~d-~~gg~IWsiai~p~--------~~~l~IgcddGvl~~~s~~p~------- 142 (691)
T KOG2048|consen 86 SGLSGS-------ITEWDLHTLKQKYNID-SNGGAIWSIAINPE--------NTILAIGCDDGVLYDFSIGPD------- 142 (691)
T ss_pred ecCCce-------EEEEecccCceeEEec-CCCcceeEEEeCCc--------cceEEeecCCceEEEEecCCc-------
Confidence 998744 3333333322222111 12233333333222 255678888997666654430
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceee---cc-ccc----CCccee-eCCC
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLD---FE-TKL----KDGSQS-HSKV 242 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~---~~-~~h----~g~V~~-~s~~ 242 (826)
.-.+...+.-..+.|-+++|.+++..+++|+ |+.|++|+...+.... +. .+. .--|++ ..-.
T Consensus 143 --------~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr 214 (691)
T KOG2048|consen 143 --------KITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR 214 (691)
T ss_pred --------eEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee
Confidence 1223444566678999999999999999999 9999999766543322 10 111 122455 2224
Q ss_pred CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccc
Q 003360 243 KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 243 ~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~ 322 (826)
...|++|-.-|+|++||.....+ .+.+..|...|.||+..++...+.+++.|+.|.-|...++...
T Consensus 215 d~tI~sgDS~G~V~FWd~~~gTL----------iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---- 280 (691)
T KOG2048|consen 215 DSTIASGDSAGTVTFWDSIFGTL----------IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---- 280 (691)
T ss_pred cCcEEEecCCceEEEEcccCcch----------hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc----
Confidence 45799999999999999955553 2234578899999999999999999999999999998765331
Q ss_pred eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~ 377 (826)
+ +.. .....|...|.+++..++ .+.+|+.|+++.+--.+.
T Consensus 281 -w-v~~-----------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 281 -W-VIN-----------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred -e-eee-----------ccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 0 000 112234556999999877 799999999998876654
No 104
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.9e-17 Score=181.63 Aligned_cols=195 Identities=16% Similarity=0.272 Sum_probs=155.3
Q ss_pred EEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccccc
Q 003360 198 MKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQS 275 (826)
Q Consensus 198 ~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~ 275 (826)
+.++ ....++.|....+-+|+.....+..+..-+...|++ |+++|.+|++|..+|.|.|||...... ++
T Consensus 183 ldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-----~~--- 253 (484)
T KOG0305|consen 183 LDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-----TR--- 253 (484)
T ss_pred hhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-----cc---
Confidence 4555 445677777888999987665555442223788888 999999999999999999999833221 11
Q ss_pred cccccc-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE-EeeccCCeEEEE
Q 003360 276 EKDFSL-SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK-VMKINGSIISLN 353 (826)
Q Consensus 276 ~~~~~~-h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~-~~~~~~~V~~l~ 353 (826)
.+.. |...|-+++|. +..+.+|+.||.|..+|++..+.. +. ...|...|+.|+
T Consensus 254 --~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~---------------------~~~~~~H~qeVCgLk 308 (484)
T KOG0305|consen 254 --TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV---------------------VSTLQGHRQEVCGLK 308 (484)
T ss_pred --cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh---------------------hhhhhcccceeeeeE
Confidence 2234 78899999998 678999999999999999955432 12 334677899999
Q ss_pred EccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE--CCCcEEEEECCCCce
Q 003360 354 MNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT--KDSSVLVLDSDNGNM 431 (826)
Q Consensus 354 ~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs--~Dg~V~iwd~~tg~~ 431 (826)
|++++.++|+|+.|+.|.|||......++.+. .|...|..++|+|. ....|++|+ .|++|++||..+|..
T Consensus 309 ws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~---~H~aAVKA~awcP~-----q~~lLAsGGGs~D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 309 WSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT---EHTAAVKALAWCPW-----QSGLLATGGGSADRCIKFWNTNTGAR 380 (484)
T ss_pred ECCCCCeeccCCCccceEeccCCCccccEEEe---ccceeeeEeeeCCC-----ccCceEEcCCCcccEEEEEEcCCCcE
Confidence 99999999999999999999998777775554 79999999999997 578888865 799999999999887
Q ss_pred EEe
Q 003360 432 LST 434 (826)
Q Consensus 432 i~~ 434 (826)
+..
T Consensus 381 i~~ 383 (484)
T KOG0305|consen 381 IDS 383 (484)
T ss_pred ecc
Confidence 754
No 105
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=4.2e-17 Score=161.74 Aligned_cols=174 Identities=13% Similarity=0.159 Sum_probs=135.1
Q ss_pred ccccCCccee--e-CCCCCEEEEEECCCcEEEEeCCCCc----eee----eeecccccccccccCCCCeEEEEEeC-CCC
Q 003360 229 ETKLKDGSQS--H-SKVKNLFITGHSDGAINFWDVSCPL----FLL----ILSLKQQSEKDFSLSGIPLTALYYDG-TSR 296 (826)
Q Consensus 229 ~~~h~g~V~~--~-s~~~~~l~Tgs~DGtVriWD~s~~~----~~~----i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~ 296 (826)
+.+|.|+|.+ . ...|+++++|+.||+|.+||+.... -.+ .+.+. ...-++|..+|+.+.|-| |..
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~---~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVA---KQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeecc---ccCCccceeeeeeeEEeeecCc
Confidence 4789999998 3 4468999999999999999992211 111 12222 112257889999999999 678
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC---CEEEEEecCCeEEEE
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS---QHLAVGSDQGYVYLL 373 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g---~~lasGs~dG~V~vw 373 (826)
+|.+++.|.++++||.++-+. .......+.|.+-++||-. -++|+|..|-.|++.
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~----------------------a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQE----------------------AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred eeecccccceEEEeeccccee----------------------eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence 999999999999999985433 3444557788888888853 479999999999999
Q ss_pred ecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC-ceEEee
Q 003360 374 DTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG-NMLSTN 435 (826)
Q Consensus 374 D~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg-~~i~~~ 435 (826)
|+.+|.+-++. .+|...|.++.|+|. ..-.|++|+.||.|++||++.- .+...+
T Consensus 174 Di~SGs~sH~L---sGHr~~vlaV~Wsp~-----~e~vLatgsaDg~irlWDiRrasgcf~~l 228 (397)
T KOG4283|consen 174 DIASGSFSHTL---SGHRDGVLAVEWSPS-----SEWVLATGSADGAIRLWDIRRASGCFRVL 228 (397)
T ss_pred eccCCcceeee---ccccCceEEEEeccC-----ceeEEEecCCCceEEEEEeecccceeEEe
Confidence 99999988555 599999999999996 3557889999999999999854 344444
No 106
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.77 E-value=9.5e-18 Score=173.52 Aligned_cols=284 Identities=13% Similarity=0.117 Sum_probs=205.1
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc--eeecccccCCccee--eCCCCCEEEEEECCCcEEEE
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP--LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFW 258 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~--~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriW 258 (826)
....+..|++.|..+.|-++...+++++ |..|++|+..... +.....+-.|+|.+ |.+++..+++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 4455789999999999999999999988 9999999754422 22223455677888 99999999999999999999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
+.....+ ..++.+|...|+++.|.-....+++|+.|.+|++||+....+
T Consensus 247 nvd~~r~----------~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C--------------------- 295 (459)
T KOG0288|consen 247 NVDSLRL----------RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC--------------------- 295 (459)
T ss_pred eccchhh----------hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe---------------------
Confidence 9943331 223568999999999988776699999999999999985433
Q ss_pred EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 339 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
.+.......+..|..+ ...+++|-.|++|++||++++.+.+... ..+.|+++..+. ++..|.+++.|
T Consensus 296 -~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~----~gg~vtSl~ls~------~g~~lLsssRD 362 (459)
T KOG0288|consen 296 -SKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP----LGGRVTSLDLSM------DGLELLSSSRD 362 (459)
T ss_pred -eccccccccccceEec--ceeeeecccccceEEEeccCCceeeEee----cCcceeeEeecc------CCeEEeeecCC
Confidence 3333334456666666 4468999999999999999999986664 234899999988 68999999999
Q ss_pred CcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEe
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYS 497 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~s 497 (826)
.++.++|+++.+...++.......+ .-+....|+|++.||++++ ++.|+||+
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~a---------------------------sDwtrvvfSpd~~YvaAGS~dgsv~iW~ 415 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCA---------------------------SDWTRVVFSPDGSYVAAGSADGSVYIWS 415 (459)
T ss_pred CceeeeecccccEEEEeeccccccc---------------------------cccceeEECCCCceeeeccCCCcEEEEE
Confidence 9999999998887776532111100 0011125778888988875 56999999
Q ss_pred ccccccccceeeeeeecCCCCceeeEeee--eCCceEEEEEEeeceEEEe
Q 003360 498 LSHAVQGVKKVLYKKKFHSSSCCWASTFY--SGSDVGLMLLFTSGKFEIR 545 (826)
Q Consensus 498 l~~~~~g~~k~~~k~~~~~~~c~~~~~~~--~~~~~~lv~~~~~G~I~i~ 545 (826)
+. ..|...+.+.+ .|-.+-... .+.|.+|+..-.++.+.+|
T Consensus 416 v~-----tgKlE~~l~~s--~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 416 VF-----TGKLEKVLSLS--TSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cc-----CceEEEEeccC--CCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 98 55666665543 221111111 1556666666555555443
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.76 E-value=2.4e-17 Score=173.16 Aligned_cols=211 Identities=15% Similarity=0.170 Sum_probs=156.3
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCC----Cc-------eeecccccCCccee--eCCCCC-EEEEEEC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSV----PP-------LLDFETKLKDGSQS--HSKVKN-LFITGHS 251 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~----~~-------~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~ 251 (826)
.-.|++.|+.+++.|..+.++++. .+.+.+|+... +. -.. ..+|++.-.+ |++... .|++|+.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~-L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLR-LKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceE-EEeecccccccccccccceeEeeccC
Confidence 357999999999999988887744 77899994321 11 112 2567773333 665443 8999999
Q ss_pred CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecC
Q 003360 252 DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSK 330 (826)
Q Consensus 252 DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~ 330 (826)
|++|++||+....... ..+. ....+..|...|..++|++. ..+|++++.|+.+.|||.|.+...
T Consensus 199 d~~i~lwdi~~~~~~~-~~~~--p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~------------ 263 (422)
T KOG0264|consen 199 DHTICLWDINAESKED-KVVD--PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK------------ 263 (422)
T ss_pred CCcEEEEeccccccCC-cccc--ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC------------
Confidence 9999999994322100 0011 12335789999999999995 478999999999999999953110
Q ss_pred CCCeEEEEEEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCC
Q 003360 331 KGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEK 409 (826)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~ 409 (826)
.. .....|.++|.|++|+| ++..||+|+.|++|++||+|+.... .....+|...|.++.|+|. ..
T Consensus 264 --~~-----~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~--lh~~e~H~dev~~V~WSPh-----~e 329 (422)
T KOG0264|consen 264 --PS-----HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP--LHTFEGHEDEVFQVEWSPH-----NE 329 (422)
T ss_pred --Cc-----ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC--ceeccCCCcceEEEEeCCC-----CC
Confidence 01 22335688899999999 4567899999999999999987643 3334589999999999996 57
Q ss_pred cEEEEEECCCcEEEEECCC
Q 003360 410 NFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 410 ~~l~sgs~Dg~V~iwd~~t 428 (826)
.+|++++.|+.+.|||+..
T Consensus 330 tvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred ceeEecccCCcEEEEeccc
Confidence 8999999999999999973
No 108
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.76 E-value=4.1e-17 Score=171.81 Aligned_cols=243 Identities=22% Similarity=0.280 Sum_probs=184.6
Q ss_pred EEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceee
Q 003360 149 LLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLD 227 (826)
Q Consensus 149 iv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~ 227 (826)
+..+..|-+-+||... ...+.+.+ .+-...-+..|..+.+++|++.|++|+ -.++.+|+...+....
T Consensus 434 VyTgGkgcVKVWdis~-------pg~k~Pvs-----qLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpri 501 (705)
T KOG0639|consen 434 VYTGGKGCVKVWDISQ-------PGNKSPVS-----QLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRI 501 (705)
T ss_pred eEecCCCeEEEeeccC-------CCCCCccc-----cccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcch
Confidence 3344567888999876 12222111 111223457899999999999999999 7899999876543332
Q ss_pred cccccCC-ccee----eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe
Q 003360 228 FETKLKD-GSQS----HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD 302 (826)
Q Consensus 228 ~~~~h~g-~V~~----~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs 302 (826)
- ...+. +-.| .+||.++..++..||.|+|||+....+ +.+|.+|.+.+.||.++++|..|-+|+
T Consensus 502 k-aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~----------VrqfqGhtDGascIdis~dGtklWTGG 570 (705)
T KOG0639|consen 502 K-AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL----------VRQFQGHTDGASCIDISKDGTKLWTGG 570 (705)
T ss_pred h-hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee----------eecccCCCCCceeEEecCCCceeecCC
Confidence 1 22222 2222 899999999999999999999977663 345679999999999999999999999
Q ss_pred CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE
Q 003360 303 QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
-|.+||.||++.+.. +.......+|.+|.++|.+.+||+|-+++.|-|.....+...
T Consensus 571 lDntvRcWDlregrq----------------------lqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky- 627 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQ----------------------LQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY- 627 (705)
T ss_pred Cccceeehhhhhhhh----------------------hhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccce-
Confidence 999999999995532 222223677999999999999999999999999888766533
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEE
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQI 450 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~ 450 (826)
.. +.|.+.|.++.|.++ |.++++.+.|.-+..|...-|.-+ ++.+..+.+++..+
T Consensus 628 ql---hlheScVLSlKFa~c------GkwfvStGkDnlLnawrtPyGasi----FqskE~SsVlsCDI 682 (705)
T KOG0639|consen 628 QL---HLHESCVLSLKFAYC------GKWFVSTGKDNLLNAWRTPYGASI----FQSKESSSVLSCDI 682 (705)
T ss_pred ee---cccccEEEEEEeccc------CceeeecCchhhhhhccCccccce----eeccccCcceeeee
Confidence 23 468899999999997 999999999999999998877666 34555566666544
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.4e-16 Score=147.42 Aligned_cols=211 Identities=16% Similarity=0.189 Sum_probs=152.2
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEe--ccCC----CceeecccccCCccee--e----CCCCCEEEEEEC-CC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLL--AKSV----PPLLDFETKLKDGSQS--H----SKVKNLFITGHS-DG 253 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w--~~~~----~~~~~~~~~h~g~V~~--~----s~~~~~l~Tgs~-DG 253 (826)
-..|.+.|.|.+|+|+|..+++|+ |++|++. +... .+-..+ .-|.|.|.. | ...+.+|++++. |.
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 356889999999999999999999 9999887 3222 222223 448888877 3 334567777654 44
Q ss_pred cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 254 AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 254 tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
.|.+=|-...+ . -..+.+|.+-|.++ ++-++-++++|+.|.+|++||++.+.+.. .+.. +.
T Consensus 164 ~iy~tdc~~g~--~--------~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~-----~l~~--~~- 224 (350)
T KOG0641|consen 164 KIYITDCGRGQ--G--------FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVN-----TLDN--DF- 224 (350)
T ss_pred eEEEeecCCCC--c--------ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceee-----eccC--cc-
Confidence 44444442221 1 11234677777776 35678899999999999999999654321 0000 00
Q ss_pred eEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEE
Q 003360 334 SHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLV 413 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~ 413 (826)
...+.....|.+++..|.|++|++|-.|....+||++++..+..+. .|+..|.++.|+|. ..+|+
T Consensus 225 ------~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~---phsadir~vrfsp~------a~yll 289 (350)
T KOG0641|consen 225 ------HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH---PHSADIRCVRFSPG------AHYLL 289 (350)
T ss_pred ------cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC---CCccceeEEEeCCC------ceEEE
Confidence 0001114569999999999999999999999999999999986554 78999999999994 78999
Q ss_pred EEECCCcEEEEECCCCceEEe
Q 003360 414 IATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 414 sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
+|+-|..|++-|+. |.+...
T Consensus 290 t~syd~~ikltdlq-gdla~e 309 (350)
T KOG0641|consen 290 TCSYDMKIKLTDLQ-GDLAHE 309 (350)
T ss_pred EecccceEEEeecc-cchhhc
Confidence 99999999999998 654433
No 110
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=6.5e-18 Score=171.97 Aligned_cols=258 Identities=12% Similarity=0.194 Sum_probs=187.0
Q ss_pred CccceeeecccCCCEEEEEEeeCC-CeEEEec-CCcEEEeccCCCc-eeecccccCCcceeeCCCCCEEEEEECCCcEEE
Q 003360 181 PKEVMLKMPFLDSSITAMKLITGN-SFILSSA-DEDYSLLAKSVPP-LLDFETKLKDGSQSHSKVKNLFITGHSDGAINF 257 (826)
Q Consensus 181 ~~~~~~~l~~h~~~Vt~~~fs~~~-~~l~~~~-d~~i~~w~~~~~~-~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVri 257 (826)
++++.-.|.+|...|.|++=+|.. ..+++|+ ||.|++|+..... ...+ ..|.|-|....-+.+.++|+++|.+|+.
T Consensus 55 akPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 55 AKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQTSFFTVGDDKTVKQ 133 (433)
T ss_pred hccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecccceEEecCCcceee
Confidence 556777789999999999999987 6778888 9999999876533 3344 7899999883333388999999999999
Q ss_pred EeCCCCceee---------------------------eeecc-cccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEE
Q 003360 258 WDVSCPLFLL---------------------------ILSLK-QQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVR 308 (826)
Q Consensus 258 WD~s~~~~~~---------------------------i~~l~-~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~ 308 (826)
|-+.++.... |++.. ......+...-..|.++.|+|. ...|++|..|+.|.
T Consensus 134 wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 134 WKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred eeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 9864432100 00000 0001112222267888889884 57888999999999
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS 388 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~ 388 (826)
|||++.+.. ++..-....-..|+|+|.+.-+++|++|..++.+|++...-. .....
T Consensus 214 LyD~R~~~P----------------------l~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p--~~v~~ 269 (433)
T KOG0268|consen 214 LYDLRQASP----------------------LKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP--LNVHK 269 (433)
T ss_pred EEecccCCc----------------------cceeeeeccccceecCccccceeeccccccceehhhhhhccc--chhhc
Confidence 999996543 222222445578999999888999999999999999876544 34556
Q ss_pred CCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccccccc
Q 003360 389 DISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAG 468 (826)
Q Consensus 389 ~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~ 468 (826)
+|.++|.++.|+|. |+-+++||-|.+|+||..+-|.-.-.+ |.+.--.++++.
T Consensus 270 dhvsAV~dVdfspt------G~EfvsgsyDksIRIf~~~~~~SRdiY--htkRMq~V~~Vk------------------- 322 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPT------GQEFVSGSYDKSIRIFPVNHGHSRDIY--HTKRMQHVFCVK------------------- 322 (433)
T ss_pred ccceeEEEeccCCC------cchhccccccceEEEeecCCCcchhhh--hHhhhheeeEEE-------------------
Confidence 89999999999996 999999999999999999876544332 333323344432
Q ss_pred ccCCCCCCCCCCCCCEEEEeecC-cEEEEecc
Q 003360 469 MNKGSPKENAVPKQWFVLLCSEK-AACAYSLS 499 (826)
Q Consensus 469 ~~~~~~~~~~~~~~~~vv~~se~-~irv~sl~ 499 (826)
++-+..||+.++|+ .||+|.-.
T Consensus 323 ---------~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 323 ---------YSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred ---------EeccccEEEecCCCcceeeeecc
Confidence 23345799998886 79999865
No 111
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=3.4e-16 Score=156.99 Aligned_cols=225 Identities=16% Similarity=0.137 Sum_probs=161.9
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..+++++.+|++..||...- ....+..|+.+|+|+.+++-...+++|+ |++|++|+.+...
T Consensus 66 ~~~~~G~~dg~vr~~Dln~~------------------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 66 STIVTGGLDGQVRRYDLNTG------------------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred ceEEEeccCceEEEEEecCC------------------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 44578888999999998771 1234688999999999999888899998 9999999876422
Q ss_pred eeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCC-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC
Q 003360 225 LLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 303 (826)
Q Consensus 225 ~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~ 303 (826)
.... ......|.+.+-.++.|++|..|..|.+||+.. ... ++.+ + ..-...++||++-|++.=+++++-
T Consensus 128 ~~~~-~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~---~q~r---e---S~lkyqtR~v~~~pn~eGy~~sSi 197 (323)
T KOG1036|consen 128 VVGT-FDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEP---FQRR---E---SSLKYQTRCVALVPNGEGYVVSSI 197 (323)
T ss_pred cccc-cccCceEEEEeccCCEEEEeecCceEEEEEcccccch---hhhc---c---ccceeEEEEEEEecCCCceEEEee
Confidence 2111 223346777788889999999999999999933 221 0011 0 111267899999998888999999
Q ss_pred CCcEEEEEeCCCCCccccc--eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 304 SGMVRIFKLKYEPHAIENS--FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~--~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
||.|.+=.++..+...... +.+-..+.++.. .--+|.+|+|+|-.+.+|+|+.||.|.+||+...+-+
T Consensus 198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~----------~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE----------IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred cceEEEEccCCchHHhhhceeEEeeecccCCce----------EEEEeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence 9999886666442211111 111111111111 1236999999999999999999999999999988877
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
..+. .....|.+++|+. |+..|++++.
T Consensus 268 ~q~~---~~~~SI~slsfs~------dG~~LAia~s 294 (323)
T KOG1036|consen 268 KQLA---KYETSISSLSFSM------DGSLLAIASS 294 (323)
T ss_pred hhcc---CCCCceEEEEecc------CCCeEEEEec
Confidence 4443 4566799999998 6999998875
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.76 E-value=3.4e-17 Score=172.37 Aligned_cols=220 Identities=15% Similarity=0.213 Sum_probs=169.6
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..+++++....|.+||+.. |+ ......++...+...+++.+||.+..+++. ||.|.+|+.....
T Consensus 478 rtLivGGeastlsiWDLAa-------------pT--prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 478 RTLIVGGEASTLSIWDLAA-------------PT--PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred ceEEeccccceeeeeeccC-------------CC--cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 3455555555677788766 11 111111233334566778899999999877 9999999876544
Q ss_pred eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCC--CCeEEEEEeCCCCEEE
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSG--IPLTALYYDGTSRVLV 299 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~--~~V~~l~fsp~~~~La 299 (826)
+..-..+|+.|+.| .+++|..|.||+-|.+||.||+ .+..+ . .|. ..|.++.+||++.+|+
T Consensus 543 ~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql------q--------qhdF~SQIfSLg~cP~~dWla 608 (705)
T KOG0639|consen 543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL------Q--------QHDFSSQIFSLGYCPTGDWLA 608 (705)
T ss_pred eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh------h--------hhhhhhhheecccCCCcccee
Confidence 43333899999999 9999999999999999999999 55542 1 233 6899999999999999
Q ss_pred EEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe
Q 003360 300 SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~ 379 (826)
+|-+++.|.|-....... .....|..-|.+|.|.+.|+++++.+.|..+..|.+--+.
T Consensus 609 vGMens~vevlh~skp~k----------------------yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 609 VGMENSNVEVLHTSKPEK----------------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred eecccCcEEEEecCCccc----------------------eeecccccEEEEEEecccCceeeecCchhhhhhccCcccc
Confidence 999999998877663222 4455567789999999999999999999999999998888
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
-+|... -.++|.+...+. |..++++|+.|....||.+
T Consensus 667 siFqsk----E~SsVlsCDIS~------ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 667 SIFQSK----ESSSVLSCDISF------DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeecc----ccCcceeeeecc------CceEEEecCCCcceEEEEE
Confidence 886553 456888888877 6899999999988777753
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.8e-17 Score=160.75 Aligned_cols=209 Identities=10% Similarity=0.125 Sum_probs=159.2
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC--C--CceeecccccCCccee--e-CC-CCCEEEEEECCCcEEEEe
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS--V--PPLLDFETKLKDGSQS--H-SK-VKNLFITGHSDGAINFWD 259 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~--~--~~~~~~~~~h~g~V~~--~-s~-~~~~l~Tgs~DGtVriWD 259 (826)
..|+..|..+...--|..|++++ |++|+++..+ . ..+.+ ..+|.|+|+. | +| .|.+||+++.||.|.||.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~-L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAE-LTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeE-ecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 56888888888888899999988 9999999332 2 23334 4899999998 4 43 899999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
-.++.... ......|...|++|+|.|. +..|++++.||.|.|.+++....- ...
T Consensus 87 e~~g~w~k--------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w---------------~t~- 142 (299)
T KOG1332|consen 87 EENGRWTK--------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW---------------TTS- 142 (299)
T ss_pred cCCCchhh--------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc---------------cch-
Confidence 96655311 2234578899999999996 578999999999999999854110 000
Q ss_pred EEEEEeeccCCeEEEEEccC---C-----------CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecc
Q 003360 338 HSVKVMKINGSIISLNMNRN---S-----------QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~---g-----------~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~ 403 (826)
.....|.-.|++++|.|. | .+|++|+.|..|+||+....+-.... ...+|.+.|..++|.|..
T Consensus 143 --ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~-~l~~H~dwVRDVAwaP~~ 219 (299)
T KOG1332|consen 143 --KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER-TLEGHKDWVRDVAWAPSV 219 (299)
T ss_pred --hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh-hhhhcchhhhhhhhcccc
Confidence 111234556888888875 4 57999999999999999887533211 246899999999999963
Q ss_pred cCCCCCcEEEEEECCCcEEEEECC
Q 003360 404 LQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 404 ~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+.-..+|++|+.||+|.||..+
T Consensus 220 --gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 220 --GLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred --CCCceeeEEecCCCcEEEEEec
Confidence 2236789999999999999876
No 114
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.9e-17 Score=162.32 Aligned_cols=249 Identities=13% Similarity=0.158 Sum_probs=168.1
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-----------------C--------------------ceeec
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-----------------P--------------------PLLDF 228 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-----------------~--------------------~~~~~ 228 (826)
.|.+|...|++++|+.||+++++++ |++|++|+.+. + .+..+
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 3678999999999999999999988 99999995110 0 00000
Q ss_pred ----------------------ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCC
Q 003360 229 ----------------------ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGI 284 (826)
Q Consensus 229 ----------------------~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~ 284 (826)
...|.-.+.. ....+.+|++++.|..|.+|++.++.++. +. ....
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~---id--------tnq~ 229 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQS---ID--------TNQS 229 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeee---ec--------cccc
Confidence 0011112222 44556799999999999999998777433 22 1223
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE-EEEeeccCCeEEEEEccCCCEEEE
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS-VKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~las 363 (826)
.-+..+.+|+|+++|+++..-.|++|..- |.++|..-.+.+ ..+..|...|++++||++..++++
T Consensus 230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~--------------f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPI--------------FTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT 295 (420)
T ss_pred cccceeeCCCCcEEEEecCCCCceEEEEE--------------eccCcchhhhhhhheeccchhheeeeeeCCCcceeEE
Confidence 34567889999999999999999999975 223442211111 445567888999999999999999
Q ss_pred EecCCeEEEEecCC-------CeeEEeee-cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 364 GSDQGYVYLLDTEG-------PTVLYQKH-IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 364 Gs~dG~V~vwD~~~-------~~~l~~~~-~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.+.||+++|||+.- +.++.... ......+....++.+| +++.|+ .+....++++..++|+....+
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP------~g~~lA-~s~gs~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP------SGDSLA-VSFGSDLKVFASEDGKDYPEL 368 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC------CCcEEE-eecCCceEEEEcccCccchhH
Confidence 99999999999842 23332221 1112233344788888 366555 455678999999998765443
Q ss_pred eccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEe
Q 003360 436 LIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYS 497 (826)
Q Consensus 436 ~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~s 497 (826)
. .-....+ ..+ .+.+++.|+..|+|+.+||+.
T Consensus 369 e--~~h~~~I---s~i-------------------------s~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 369 E--DIHSTTI---SSI-------------------------SYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred H--HhhcCce---eeE-------------------------EecCCCcEEeeecceeeeeec
Confidence 1 1111111 222 255677899999999999997
No 115
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.1e-18 Score=191.23 Aligned_cols=205 Identities=15% Similarity=0.253 Sum_probs=172.7
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCc
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPL 264 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~ 264 (826)
-.|...|.|...-..++.+++|+ |+.+.+|.-..++...-..+|.++|.+ |+....+|++|+.||+||+||+ .+..
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~ 104 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI 104 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhh
Confidence 46778888988888889999998 899999976655544434899999999 9999999999999999999999 4444
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
+..+.+|...+..|.|+|.+.++|+|+.|+.+++||.+...+. ..+..
T Consensus 105 -----------vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~---------------------~~~~s 152 (825)
T KOG0267|consen 105 -----------VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS---------------------HTYKS 152 (825)
T ss_pred -----------hhhhhccccCcceeeeccceEEeccccccccceehhhhccCce---------------------eeecC
Confidence 2234678899999999999999999999999999999854332 22333
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 345 INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
|...|.++.|+|+|.++++|++|.+++|||...++++..+ ..|...|.++.|+|. .-.+..|+.|++|++|
T Consensus 153 ~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef---~~~e~~v~sle~hp~------e~Lla~Gs~d~tv~f~ 223 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF---KSHEGKVQSLEFHPL------EVLLAPGSSDRTVRFW 223 (825)
T ss_pred CcceeEEEeecCCCceeeccCCcceeeeeccccccccccc---ccccccccccccCch------hhhhccCCCCceeeee
Confidence 6677999999999999999999999999999999988555 368889999999995 6678899999999999
Q ss_pred ECCCCceEEe
Q 003360 425 DSDNGNMLST 434 (826)
Q Consensus 425 d~~tg~~i~~ 434 (826)
|+++-+.+.+
T Consensus 224 dletfe~I~s 233 (825)
T KOG0267|consen 224 DLETFEVISS 233 (825)
T ss_pred ccceeEEeec
Confidence 9998777766
No 116
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=5.1e-17 Score=162.12 Aligned_cols=228 Identities=14% Similarity=0.178 Sum_probs=159.9
Q ss_pred cCCCEEEEEEeeCCCeEE-Eec-CCcEEEeccCC-Ccee-ecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCc
Q 003360 191 LDSSITAMKLITGNSFIL-SSA-DEDYSLLAKSV-PPLL-DFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPL 264 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~~-~~~~-~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~ 264 (826)
.+..|.+++|+|....++ +++ |++||+|..+. ..+. .....|.+.|.+ |+.+|..+++|+.|+.+++||+...+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 457899999999665555 566 99999995432 1222 223668999988 99999999999999999999994444
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCC--EEEEEeCCCcEEEEEeCCCCCccccceE-------------EEeec
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSR--VLVSGDQSGMVRIFKLKYEPHAIENSFL-------------SFTGS 329 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~--~Lasgs~dg~V~iwd~~~~~~~~~~~~~-------------~i~~s 329 (826)
. ..+..|..+|.++.|-+... .|++||.|.+|+.||.+.........+. -+...
T Consensus 106 ~-----------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata 174 (347)
T KOG0647|consen 106 V-----------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATA 174 (347)
T ss_pred e-----------eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEec
Confidence 2 23457999999999987654 8999999999999999965221111110 01111
Q ss_pred CCCCe-EEEEE------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC--eeEEeeecccC---CC---CCe
Q 003360 330 KKGNS-HIIHS------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP--TVLYQKHIASD---IS---SGI 394 (826)
Q Consensus 330 ~~~~~-~~~~~------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~--~~l~~~~~~~~---~~---~~V 394 (826)
..+.. ..+.. ....+++-.++|++..++....|.|+-.|.|.|..+..+ +.-|++++... .. -+|
T Consensus 175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 11100 00000 111223556999999998888899999999999988776 44455655432 11 257
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.+|+|.|. ...|+++++||++.+||-..-..+.+.
T Consensus 255 Nsi~FhP~------hgtlvTaGsDGtf~FWDkdar~kLk~s 289 (347)
T KOG0647|consen 255 NSIAFHPV------HGTLVTAGSDGTFSFWDKDARTKLKTS 289 (347)
T ss_pred cceEeecc------cceEEEecCCceEEEecchhhhhhhcc
Confidence 78899995 788999999999999998865555443
No 117
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=2.7e-17 Score=164.29 Aligned_cols=217 Identities=12% Similarity=0.089 Sum_probs=167.8
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC--CC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV--SC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~--s~ 262 (826)
+.+|...|+.++.....+.+.+++ |.+.++|.......+....+|.|.|.+ |++.+.+++|++.|++-.||.+ .-
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcC
Confidence 468999999999988888888888 999999976554444334999999999 9999999999999999999983 11
Q ss_pred Cceeeee--------eccc------------c--------cccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCC
Q 003360 263 PLFLLIL--------SLKQ------------Q--------SEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKY 314 (826)
Q Consensus 263 ~~~~~i~--------~l~~------------~--------~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~ 314 (826)
+..+... .++. . ....+.+|...|.+..|-..++.++++++|.+..+||+++
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt 303 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET 303 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence 1100000 0000 0 0123556778899999999999999999999999999996
Q ss_pred CCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCe
Q 003360 315 EPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGI 394 (826)
Q Consensus 315 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V 394 (826)
+... ..+..|....+.++-+|..+++++.+.|-+.++||++. .+.......+|...|
T Consensus 304 ge~v---------------------~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtV 360 (481)
T KOG0300|consen 304 GEVV---------------------NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTV 360 (481)
T ss_pred Ccee---------------------ccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccce
Confidence 6442 12234556678888899999999999999999999983 334455567999999
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc-eEEe
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN-MLST 434 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~-~i~~ 434 (826)
++..|.. +..+++|+.|.+|+|||+++-+ .+.+
T Consensus 361 TS~vF~~-------dd~vVSgSDDrTvKvWdLrNMRsplAT 394 (481)
T KOG0300|consen 361 TSVVFNT-------DDRVVSGSDDRTVKVWDLRNMRSPLAT 394 (481)
T ss_pred eEEEEec-------CCceeecCCCceEEEeeeccccCccee
Confidence 9999997 7789999999999999998643 4444
No 118
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=1.8e-17 Score=179.96 Aligned_cols=211 Identities=15% Similarity=0.213 Sum_probs=163.3
Q ss_pred eCCCeEEEec-CCcEEEeccCC-------CceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeec
Q 003360 202 TGNSFILSSA-DEDYSLLAKSV-------PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL 271 (826)
Q Consensus 202 ~~~~~l~~~~-d~~i~~w~~~~-------~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l 271 (826)
|++++|++|+ |++|++|+... +....+ ..|...|.. ...+++.|++++.|-+|++|++.....-++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s-- 111 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS-- 111 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh--
Confidence 5778899999 99999995332 123333 568888888 6677889999999999999999433211222
Q ss_pred ccccccccccCCCCeEEEEE-eCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-eccCCe
Q 003360 272 KQQSEKDFSLSGIPLTALYY-DGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSI 349 (826)
Q Consensus 272 ~~~~~~~~~~h~~~V~~l~f-sp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V 349 (826)
.+..|.+-|.||++ .++..++|+|+-|+.|.+||++.+....-..+..++. -... .+..+|
T Consensus 112 ------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~-----------~sl~sG~k~si 174 (735)
T KOG0308|consen 112 ------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV-----------NSLGSGPKDSI 174 (735)
T ss_pred ------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc-----------ccCCCCCccce
Confidence 23468899999999 8899999999999999999999763200000000000 0111 346679
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
.+++.++.|..+++|+..+-+++||.++++.+.... +|...|..+-... ||..++++++||+|++||+.-.
T Consensus 175 YSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~ll~~d------DGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVLLVND------DGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred eeeecCCcceEEEecCcccceEEeccccccceeeee---ccccceEEEEEcC------CCCeEeecCCCceEEeeecccc
Confidence 999999999999999999999999999998884333 9999999999888 7999999999999999999999
Q ss_pred ceEEeeeccCCC
Q 003360 430 NMLSTNLIHPKK 441 (826)
Q Consensus 430 ~~i~~~~~~~~~ 441 (826)
+|+.++..|...
T Consensus 246 rCl~T~~vH~e~ 257 (735)
T KOG0308|consen 246 RCLATYIVHKEG 257 (735)
T ss_pred ceeeeEEeccCc
Confidence 999998777654
No 119
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.75 E-value=1.5e-16 Score=167.23 Aligned_cols=235 Identities=12% Similarity=0.157 Sum_probs=173.2
Q ss_pred EeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCe-EEEec-CCcEEEeccCCCce--
Q 003360 150 LLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF-ILSSA-DEDYSLLAKSVPPL-- 225 (826)
Q Consensus 150 v~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~~~~~-- 225 (826)
..+..|.+++||... +++.....-...+-++|.+|...-..++|++.... +++++ |+.+++|+.+....
T Consensus 142 t~t~~~dv~Vfd~tk-------~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~ 214 (422)
T KOG0264|consen 142 TKTSSGDVYVFDYTK-------HPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED 214 (422)
T ss_pred ecCCCCCEEEEEecc-------CCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC
Confidence 447789999999887 33322221123344578899987788889886554 44455 99999996443211
Q ss_pred -----eecccccCCccee--eCCC-CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-C
Q 003360 226 -----LDFETKLKDGSQS--HSKV-KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-R 296 (826)
Q Consensus 226 -----~~~~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~ 296 (826)
.....+|...|.. |++. ..++++++.|+.+.|||+......+ ...+..|...|+|++|+|-+ .
T Consensus 215 ~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~--------~~~~~ah~~~vn~~~fnp~~~~ 286 (422)
T KOG0264|consen 215 KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP--------SHSVKAHSAEVNCVAFNPFNEF 286 (422)
T ss_pred ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC--------cccccccCCceeEEEeCCCCCc
Confidence 1124678888888 8874 4589999999999999994322111 22346789999999999964 6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEec
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~ 375 (826)
+||+|+.|++|.+||+|.-... . ..+..|...|.+|.|||.. ..||+++.|+.+.|||+
T Consensus 287 ilAT~S~D~tV~LwDlRnL~~~---------------l-----h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 287 ILATGSADKTVALWDLRNLNKP---------------L-----HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred eEEeccCCCcEEEeechhcccC---------------c-----eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 8899999999999999843221 1 4556678889999999964 67899999999999999
Q ss_pred CCC--------------eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 376 EGP--------------TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 376 ~~~--------------~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
..- .++|. ..+|...|..+.|.|. +.-.|++++.|+.+.||...
T Consensus 347 s~ig~eq~~eda~dgppEllF~---HgGH~~kV~DfsWnp~-----ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFI---HGGHTAKVSDFSWNPN-----EPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccccChhhhccCCcceeEE---ecCcccccccccCCCC-----CCeEEEEecCCceEEEeecc
Confidence 542 23332 3589999999999996 56678899999999999986
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.7e-16 Score=176.17 Aligned_cols=205 Identities=16% Similarity=0.167 Sum_probs=142.5
Q ss_pred eEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccC
Q 003360 206 FILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLS 282 (826)
Q Consensus 206 ~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h 282 (826)
++++++ +++|.+|........+.....+-.+.+ ++.+|+++|.|+.|-.|++-+...... +..+.+|
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~----------~~~lrgh 137 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ----------EKVLRGH 137 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch----------heeeccc
Confidence 444444 566666643322222111222334444 888999999999999999999832221 1123579
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEE
Q 003360 283 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLA 362 (826)
Q Consensus 283 ~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~la 362 (826)
..+|.+|.|+|.+.+||+.+.||.|++|++..+...+ .+..+. ++... .....++.++|+|+|..+|
T Consensus 138 ~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~--tl~~v~--k~n~~---------~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 138 DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSK--TLTGVD--KDNEF---------ILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhh--hcccCC--ccccc---------cccceeeeeeecCCCCeEE
Confidence 9999999999999999999999999999998653321 000000 00000 0134578899999988899
Q ss_pred EEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC------CCceEEeee
Q 003360 363 VGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD------NGNMLSTNL 436 (826)
Q Consensus 363 sGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~------tg~~i~~~~ 436 (826)
+...|+.|++|+..+....+..... .+.+.+..++|+|+ |.||++++.||.|.|||.. -.+.++...
T Consensus 205 ~~~~d~~Vkvy~r~~we~~f~Lr~~-~~ss~~~~~~wsPn------G~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~a 277 (933)
T KOG1274|consen 205 VPPVDNTVKVYSRKGWELQFKLRDK-LSSSKFSDLQWSPN------GKYIAASTLDGQILVWNVDTHERHEFKRAVCCEA 277 (933)
T ss_pred eeccCCeEEEEccCCceeheeeccc-ccccceEEEEEcCC------CcEEeeeccCCcEEEEecccchhccccceeEEEe
Confidence 9999999999999999988766542 34444999999996 9999999999999999999 444444444
Q ss_pred ccCC
Q 003360 437 IHPK 440 (826)
Q Consensus 437 ~~~~ 440 (826)
.++.
T Consensus 278 w~p~ 281 (933)
T KOG1274|consen 278 WKPN 281 (933)
T ss_pred cCCC
Confidence 4444
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.74 E-value=1.7e-14 Score=152.81 Aligned_cols=323 Identities=13% Similarity=0.168 Sum_probs=212.5
Q ss_pred ccccceEEEecCCCCCEEEEEEecC---cEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCc
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNG---EILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKAS 88 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DG---sI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g 88 (826)
-++.|+|+++..-+|--+++.-+|| -+-+||-+-+...-..+ ...+-+....|. |.+.
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk----------------~sne~v~~a~FH---Ptd~ 213 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK----------------TSNEVVFLATFH---PTDP 213 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce----------------eccceEEEEEec---cCCC
Confidence 4889999999765654444444443 46788877651111000 011224444554 3455
Q ss_pred eEEEEccCCcCccceeEEEEcccCCcceeE-EEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 89 RLYIMGASDFVSMNLLQIVLLNEQTESRTT-KLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 89 ~lli~gg~~~~~~~~~~vl~~~~~~~~~~~-~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
.|.|.-|... +.+|.+......+.. .+.-+-...+.-+.+++. .-++.+-+.|.|.+|+...-
T Consensus 214 nliit~Gk~H-----~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en---------gdviTgDS~G~i~Iw~~~~~-- 277 (626)
T KOG2106|consen 214 NLIITCGKGH-----LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN---------GDVITGDSGGNILIWSKGTN-- 277 (626)
T ss_pred cEEEEeCCce-----EEEEEccCCceEEEeeccccccceEEEEEEEcCC---------CCEEeecCCceEEEEeCCCc--
Confidence 6777666644 444444333322221 122222222333333322 23577888899999998651
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec------------------
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF------------------ 228 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~------------------ 228 (826)
........|+..|.+++...+|..+- |+ |..|..|+.........
T Consensus 278 ---------------~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d 341 (626)
T KOG2106|consen 278 ---------------RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD 341 (626)
T ss_pred ---------------eEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCc
Confidence 12222348999999999999998776 77 99999995322111110
Q ss_pred ----------------------ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCC
Q 003360 229 ----------------------ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGI 284 (826)
Q Consensus 229 ----------------------~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~ 284 (826)
..+|..+.+. .+|+.+.++|+++|+.|++|+-... +++.. -..
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~----~wt~~---------~~d 408 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKL----EWTKI---------IED 408 (626)
T ss_pred EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCce----eEEEE---------ecC
Confidence 1235555555 7899999999999999999993222 22222 236
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG 364 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG 364 (826)
++.|+.|+|.+ .+|+|...|...+.|.++... +.....+.++++++|+|+|.++|+|
T Consensus 409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l----------------------v~~~~d~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 409 PAECADFHPSG-VVAVGTATGRWFVLDTETQDL----------------------VTIHTDNEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred ceeEeeccCcc-eEEEeeccceEEEEeccccee----------------------EEEEecCCceEEEEEcCCCCEEEEe
Confidence 88999999999 999999999999999884322 2222337789999999999999999
Q ss_pred ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 365 SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 365 s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+.|+.|+||-+....-.+..- ...+.++|+.+.|++ |+++|.+-+-|-.|..|....
T Consensus 466 s~d~~iyiy~Vs~~g~~y~r~-~k~~gs~ithLDwS~------Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKYSRV-GKCSGSPITHLDWSS------DSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred cCCCeEEEEEECCCCcEEEEe-eeecCceeEEeeecC------CCceEEeccCceEEEEEcccc
Confidence 999999999987654443321 122348999999999 799999999999999995543
No 122
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.1e-15 Score=165.05 Aligned_cols=227 Identities=15% Similarity=0.205 Sum_probs=166.9
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec--ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF--ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~--~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
+.+..+.|++++|+...+.||.+- ++.|-+|+....++... .-+-.+.|.+ |+ ++..|.+.+.+|+|.-||+..
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence 355567899999999999999988 99999998877676654 2233445555 77 555688889999999999943
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
... ++.+ +..+.+|++++.+|.+..+++|++||.+.+++...+.. .+. ..+
T Consensus 100 lk~--~~~~--------d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I----------------~~~---r~l 150 (691)
T KOG2048|consen 100 LKQ--KYNI--------DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI----------------TYK---RSL 150 (691)
T ss_pred Cce--eEEe--------cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE----------------EEE---eec
Confidence 331 1222 24558999999999999999999999554444442111 111 233
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE-----eeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY-----QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~-----~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
....+.|.+|+|++++..+|.|+.||.|++||...+.-++ ......+...-|+++.|-. ...|++|.+
T Consensus 151 ~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-------d~tI~sgDS 223 (691)
T KOG2048|consen 151 MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-------DSTIASGDS 223 (691)
T ss_pred ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-------cCcEEEecC
Confidence 3446889999999999999999999999999999998775 1222222344577777765 678999999
Q ss_pred CCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCC
Q 003360 418 DSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQ 454 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~ 454 (826)
-|+|++||...|.++.++..|. ..+++|..-+..
T Consensus 224 ~G~V~FWd~~~gTLiqS~~~h~---adVl~Lav~~~~ 257 (691)
T KOG2048|consen 224 AGTVTFWDSIFGTLIQSHSCHD---ADVLALAVADNE 257 (691)
T ss_pred CceEEEEcccCcchhhhhhhhh---cceeEEEEcCCC
Confidence 9999999999999998865443 456676665543
No 123
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.3e-15 Score=152.97 Aligned_cols=224 Identities=19% Similarity=0.197 Sum_probs=166.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC--eEEEec-CCcEEEeccCC
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS--FILSSA-DEDYSLLAKSV 222 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~--~l~~~~-d~~i~~w~~~~ 222 (826)
++++.++++-.|++||...- . ..-.+-.|.+.|+++.|.++-. .|++|+ ||.|.+|+.+.
T Consensus 54 ~~~aSGssDetI~IYDm~k~----------------~-qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 54 PYVASGSSDETIHIYDMRKR----------------K-QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred eeEeccCCCCcEEEEeccch----------------h-hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence 34455556667888887651 0 1223567899999999999876 888888 99999998764
Q ss_pred CceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 223 PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 223 ~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
=.......+|++.|+. .||.+++-++-+.|+++|+||+ .++. ..++.|+. .-+.|.|+|.|.+|+
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~-a~v~~L~~-----------~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV-AFVLNLKN-----------KATLVSWSPQGDHFV 184 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc-ceeeccCC-----------cceeeEEcCCCCEEE
Confidence 2222224789999988 9999999999999999999999 5443 22233331 234599999999999
Q ss_pred EEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe
Q 003360 300 SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~ 379 (826)
+++.++ |-+|.+..... ......+..+.|+.|-.. ..|++|.+|+.|++||.....
T Consensus 185 v~~~~~-i~i~q~d~A~v----------------------~~~i~~~~r~l~~~~l~~-~~L~vG~d~~~i~~~D~ds~~ 240 (362)
T KOG0294|consen 185 VSGRNK-IDIYQLDNASV----------------------FREIENPKRILCATFLDG-SELLVGGDNEWISLKDTDSDT 240 (362)
T ss_pred EEeccE-EEEEecccHhH----------------------hhhhhccccceeeeecCC-ceEEEecCCceEEEeccCCCc
Confidence 998885 78999873321 111222344777777644 479999999999999999887
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
+++.+ ..|...|..+.+... .++.+|+++++||.|+|||.+..
T Consensus 241 ~~~~~---~AH~~RVK~i~~~~~----~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 241 PLTEF---LAHENRVKDIASYTN----PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cceee---ecchhheeeeEEEec----CCceEEEEeccCceEEEEEcccc
Confidence 77555 378999999986541 14789999999999999999865
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=6.4e-16 Score=155.08 Aligned_cols=250 Identities=15% Similarity=0.128 Sum_probs=181.1
Q ss_pred EeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEE
Q 003360 120 LALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMK 199 (826)
Q Consensus 120 ~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~ 199 (826)
+..++...+.++.+.+. ...+++.+.+|.|.+||....+..+ .--|..++.+++
T Consensus 8 l~npP~d~IS~v~f~~~--------~~~LLvssWDgslrlYdv~~~~l~~------------------~~~~~~plL~c~ 61 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPS--------SSDLLVSSWDGSLRLYDVPANSLKL------------------KFKHGAPLLDCA 61 (323)
T ss_pred cCCCChhceeeEEEcCc--------CCcEEEEeccCcEEEEeccchhhhh------------------heecCCceeeee
Confidence 33444555565555433 3568899999999999987731100 135778999999
Q ss_pred EeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccc
Q 003360 200 LITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSE 276 (826)
Q Consensus 200 fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~ 276 (826)
|..+ ..+++|+ |+.|+.++......... ..|..+|.| ..+....+++|+.|++|++||...... +..+
T Consensus 62 F~d~-~~~~~G~~dg~vr~~Dln~~~~~~i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~--~~~~----- 132 (323)
T KOG1036|consen 62 FADE-STIVTGGLDGQVRRYDLNTGNEDQI-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV--VGTF----- 132 (323)
T ss_pred ccCC-ceEEEeccCceEEEEEecCCcceee-ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc--cccc-----
Confidence 9874 4566666 99999997665444444 669999999 777788999999999999999954331 1111
Q ss_pred cccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc
Q 003360 277 KDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR 356 (826)
Q Consensus 277 ~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~ 356 (826)
..+..|.++... +..|++|..+..|.+||++...... + .+....+-++.|+++-|
T Consensus 133 ----d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~--------------q-----~reS~lkyqtR~v~~~p 187 (323)
T KOG1036|consen 133 ----DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF--------------Q-----RRESSLKYQTRCVALVP 187 (323)
T ss_pred ----ccCceEEEEecc--CCEEEEeecCceEEEEEcccccchh--------------h-----hccccceeEEEEEEEec
Confidence 122478888764 5689999999999999999543210 1 22333456799999999
Q ss_pred CCCEEEEEecCCeEEEEecCCC----eeEEeeecccCC------CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 357 NSQHLAVGSDQGYVYLLDTEGP----TVLYQKHIASDI------SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 357 ~g~~lasGs~dG~V~vwD~~~~----~~l~~~~~~~~~------~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
++.-.|+++-||.|.|=.+... +.-|.+.+.... --||.+|+|+|. ...+++|+.||.|.+||+
T Consensus 188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~------~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI------HGTFATGGSDGIVNIWDL 261 (323)
T ss_pred CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc------cceEEecCCCceEEEccC
Confidence 8888999999999988776554 233444443221 137999999996 788999999999999999
Q ss_pred CCCceEEee
Q 003360 427 DNGNMLSTN 435 (826)
Q Consensus 427 ~tg~~i~~~ 435 (826)
.+-+.+..+
T Consensus 262 ~~rKrl~q~ 270 (323)
T KOG1036|consen 262 FNRKRLKQL 270 (323)
T ss_pred cchhhhhhc
Confidence 988877764
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.7e-16 Score=164.85 Aligned_cols=204 Identities=16% Similarity=0.240 Sum_probs=150.5
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeee
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLIL 269 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~ 269 (826)
..+.....++++++++.++ .|.|.+....+..+... ....|.|.. |+.+++.|+..+.+|.|.+||+..+.. ++
T Consensus 304 ~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s-~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~--~~ 380 (514)
T KOG2055|consen 304 KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS-FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC--LH 380 (514)
T ss_pred chhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe-eeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce--EE
Confidence 4566677899999999988 99999886665444433 345677766 999999999999999999999955542 22
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCe
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSI 349 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V 349 (826)
....+ . ...-+.++.++++.+||+|+..|.|.|||.+...... .-.+. .....+...|
T Consensus 381 rf~D~--G-----~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~-----------~PkPi----k~~dNLtt~I 438 (514)
T KOG2055|consen 381 RFVDD--G-----SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST-----------NPKPI----KTVDNLTTAI 438 (514)
T ss_pred EEeec--C-----ccceeeeeecCCCceEEeccCcceEEEeccchhhccC-----------CCCch----hhhhhhheee
Confidence 22211 1 1123566777999999999999999999976331100 00110 1223346679
Q ss_pred EEEEEccCCCEEEEEec--CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 350 ISLNMNRNSQHLAVGSD--QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~--dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++|+|++++++||++|. +..+|+..+.+.++...+......-+.|+|++|+|. +.+|++|..+|.|.+|.+.
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~------sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN------SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC------CceEEeecCCCceeeEeec
Confidence 99999999999999884 568999999888877555544455577999999994 9999999999999999864
No 126
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=3.7e-16 Score=164.07 Aligned_cols=209 Identities=14% Similarity=0.122 Sum_probs=165.7
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc---------------eeec--cc-ccCCccee--eCCCCC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP---------------LLDF--ET-KLKDGSQS--HSKVKN 244 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~---------------~~~~--~~-~h~g~V~~--~s~~~~ 244 (826)
..+..|.-+|+++++++++.+.++++ +++|.-|+..... ...+ .+ .|...+.+ .++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 44567889999999999999999999 9999988432211 0111 22 57777777 999999
Q ss_pred EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
+|+||+.|..|.|||...... ...+.+|..+|.+++|-..+..|++++.|+.|++|++....+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~eh----------v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v------ 279 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEH----------VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV------ 279 (479)
T ss_pred EEEecCCCceEEEecCcccch----------hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH------
Confidence 999999999999999944331 2235689999999999999999999999999999999733221
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeeccc
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSL 404 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~ 404 (826)
-.+..|++.|.+|....-++.+-+|..|+++++|++..-.-+ +..++.+.+-|++|..
T Consensus 280 ---------------etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql----ifrg~~~sidcv~~In--- 337 (479)
T KOG0299|consen 280 ---------------ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL----IFRGGEGSIDCVAFIN--- 337 (479)
T ss_pred ---------------HHHhCCccceeeechhcccceEEeccccceeEEEecccccee----eeeCCCCCeeeEEEec---
Confidence 223456778999999888888888889999999999544333 1236678899999987
Q ss_pred CCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 405 QGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 405 ~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
...+++|+.||.|.+|++..-+.+.+..
T Consensus 338 ----~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 338 ----DEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred ----ccceeeccCCceEEEeeecccCceeEee
Confidence 7889999999999999999888887753
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=1.6e-16 Score=175.72 Aligned_cols=202 Identities=19% Similarity=0.285 Sum_probs=144.6
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccC----CCc-eeecccccCCccee----eC-CCCCEEEEEECCCcEEEEeCCC
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKS----VPP-LLDFETKLKDGSQS----HS-KVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~----~~~-~~~~~~~h~g~V~~----~s-~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
....+++..++-..++.++...+.+|... ... ...+....+--..+ |+ -+.++|||++..|.|-+||+..
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred cccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 34566667788888888887777777321 111 11111111111222 44 3568999999999999999943
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.. ++.....|..|...|+++.|++. ..+|++|++||+|++||++..... ..
T Consensus 120 ~~-------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~---------------------~t 171 (839)
T KOG0269|consen 120 SI-------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK---------------------ST 171 (839)
T ss_pred cc-------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc---------------------cc
Confidence 11 11112235679999999999985 578999999999999999955331 11
Q ss_pred EeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 342 VMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
+......|+.++|+| .+..++++++.|.+.+||+|++..- ......|.++|.++.|+| +..+|++||.|++
T Consensus 172 ~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~--~~k~~AH~GpV~c~nwhP------nr~~lATGGRDK~ 243 (839)
T KOG0269|consen 172 FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC--EKKLTAHNGPVLCLNWHP------NREWLATGGRDKM 243 (839)
T ss_pred ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH--HHHhhcccCceEEEeecC------CCceeeecCCCcc
Confidence 112245699999998 4678999999999999999998644 122247999999999999 5999999999999
Q ss_pred EEEEECCCCc
Q 003360 421 VLVLDSDNGN 430 (826)
Q Consensus 421 V~iwd~~tg~ 430 (826)
|+|||..+++
T Consensus 244 vkiWd~t~~~ 253 (839)
T KOG0269|consen 244 VKIWDMTDSR 253 (839)
T ss_pred EEEEeccCCC
Confidence 9999998654
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.4e-16 Score=165.73 Aligned_cols=215 Identities=16% Similarity=0.182 Sum_probs=169.8
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeee
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLI 268 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i 268 (826)
.++|.|++-+++|.+++.|. .+.+-+|....+.++.+...|-..|+| |+-|+.+|+||+.||.|.+|++..-.- ..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~-a~ 159 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS-AD 159 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc-cc
Confidence 35799999999999999997 999999987777777766889999999 999999999999999999999721110 00
Q ss_pred eecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc
Q 003360 269 LSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN 346 (826)
Q Consensus 269 ~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~ 346 (826)
..-.......+..|.-+|+.+...+. ...|+++|.|.++++||+..+.. +.....+
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L----------------------Llti~fp 217 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL----------------------LLTITFP 217 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee----------------------eEEEecC
Confidence 00011112235678899999998765 46899999999999999985533 4445557
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEecCCCee-----------E--EeeecccCCCC--CeeEEEEeecccCCCCCcE
Q 003360 347 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV-----------L--YQKHIASDISS--GIVSLQFETCSLQGFEKNF 411 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~-----------l--~~~~~~~~~~~--~V~sl~f~~~~~~~~d~~~ 411 (826)
..+.+++.+|.+..+.+|+++|.|.+.++.+..- . -......+|.. +|+|++.+. |+..
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~------Dgtl 291 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST------DGTL 291 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec------CccE
Confidence 8899999999999999999999999998854330 0 01122345655 999999998 7999
Q ss_pred EEEEECCCcEEEEECCCCceEEee
Q 003360 412 LVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 412 l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
|++|+.||.|.|||..+-++++++
T Consensus 292 LlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 292 LLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred EEeeCCCCCEEEEecchHHHHHHH
Confidence 999999999999999998888875
No 129
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=3.8e-16 Score=151.57 Aligned_cols=234 Identities=12% Similarity=0.163 Sum_probs=175.4
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee--CCCeEEEec-CCcEEEeccCCC
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT--GNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~--~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
.+...++++.+.+++...- . .......|.+|.++|+.++|.. -|..|++++ |+.|.+|+...+
T Consensus 25 rlATcsSD~tVkIf~v~~n-------~-------~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g 90 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNN-------G-------QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG 90 (299)
T ss_pred eeeeecCCccEEEEEEcCC-------C-------CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC
Confidence 4566777888888776541 0 1235567899999999999976 789999999 999999976543
Q ss_pred c-eeec-ccccCCccee----eCCCCCEEEEEECCCcEEEEeCCCC-ceeeeeecccccccccccCCCCeEEEEEeCC--
Q 003360 224 P-LLDF-ETKLKDGSQS----HSKVKNLFITGHSDGAINFWDVSCP-LFLLILSLKQQSEKDFSLSGIPLTALYYDGT-- 294 (826)
Q Consensus 224 ~-~~~~-~~~h~g~V~~----~s~~~~~l~Tgs~DGtVriWD~s~~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-- 294 (826)
. .... ...|.+.|++ .+.+|-+|++|+.||.|.|.++... .. .....+..|...|++++|+|.
T Consensus 91 ~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w--------~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 91 RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW--------TTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc--------cchhhhhccccccceeeecCcCC
Confidence 2 2222 2568999988 4567889999999999999998332 21 001223578899999999996
Q ss_pred -C-----------CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC----
Q 003360 295 -S-----------RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS---- 358 (826)
Q Consensus 295 -~-----------~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g---- 358 (826)
+ +.|++|+.|..|+||++..+.... . -.+..|.+-|+.++|.|.-
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~--------------e-----~~l~~H~dwVRDVAwaP~~gl~~ 223 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL--------------E-----RTLEGHKDWVRDVAWAPSVGLPK 223 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhh--------------h-----hhhhhcchhhhhhhhccccCCCc
Confidence 3 459999999999999998542211 0 1244567789999999964
Q ss_pred CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 359 QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 359 ~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
..+|++++||+|.||-.+.-.-.....+......++.++.|+.. +++|++++.|+.|.+|-..
T Consensus 224 s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s------Gn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 224 STIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS------GNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred eeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc------ccEEEEecCCcEEEEEEeC
Confidence 46999999999999987633223333444456778999999995 9999999999999999866
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=9.9e-17 Score=177.45 Aligned_cols=234 Identities=16% Similarity=0.193 Sum_probs=173.8
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEE-Eec-CCcEEEeccC
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFIL-SSA-DEDYSLLAKS 221 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~ 221 (826)
....+.+....|.|.+||.... ..+.....+..|+-.|+++.|++..+.++ +|+ |++|++|+.+
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~--------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR 164 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKS--------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR 164 (839)
T ss_pred hhhhheeecCCCcEEEEecCcc--------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence 3456677888999999999761 01222234578999999999998776655 566 9999999765
Q ss_pred CCceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEE
Q 003360 222 VPPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL 298 (826)
Q Consensus 222 ~~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L 298 (826)
...-.....+....|.. |+| ++..+++++..|.+++||+..+.+ + +..+..|.++|.|+.|+|+..+|
T Consensus 165 ~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---~------~~k~~AH~GpV~c~nwhPnr~~l 235 (839)
T KOG0269|consen 165 SKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---C------EKKLTAHNGPVLCLNWHPNREWL 235 (839)
T ss_pred cccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh---H------HHHhhcccCceEEEeecCCCcee
Confidence 43322222344555655 776 577999999999999999955442 1 23356899999999999999999
Q ss_pred EEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEEEe--cCCeEEEEec
Q 003360 299 VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGS--DQGYVYLLDT 375 (826)
Q Consensus 299 asgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~lasGs--~dG~V~vwD~ 375 (826)
|+|+.|++|+||++..+... . ........+|.++.|-|... +||+++ .|-.|+|||+
T Consensus 236 ATGGRDK~vkiWd~t~~~~~--------------~------~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAK--------------P------KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred eecCCCccEEEEeccCCCcc--------------c------eeEEeecceeeeeeeccCccchhhhhhccccceEEEEee
Confidence 99999999999999844221 1 22223356899999999765 466665 4778999999
Q ss_pred CCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 376 EGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+.+-+.+.. ...|...++.++|... |...+++++.||+|..-..+
T Consensus 296 rRPYIP~~t--~~eH~~~vt~i~W~~~-----d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 296 RRPYIPYAT--FLEHTDSVTGIAWDSG-----DRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cccccccee--eeccCccccceeccCC-----CceeeEeecCccHHHHhhhh
Confidence 998877433 3578899999999874 67899999999988544333
No 131
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=9.8e-17 Score=163.45 Aligned_cols=287 Identities=16% Similarity=0.165 Sum_probs=182.5
Q ss_pred cccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeC
Q 003360 5 VLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYAD 84 (826)
Q Consensus 5 ~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~ 84 (826)
++.++..|-..|.|++-|+..-+.+|+|+-||.|+|||+......++. ..+..+|.-+....
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f----------------~AH~G~V~Gi~v~~-- 119 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF----------------KAHEGLVRGICVTQ-- 119 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee----------------ecccCceeeEEecc--
Confidence 456667777899999996433489999999999999999885222221 12223444443221
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCC-CCCCCceEEEeccCccEEEecch
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDP-NKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~-~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
+..+.+|.+ ..+..|.++.. ..++ ++..+.+. -+++...-+..+..-++.+||..
T Consensus 120 ---~~~~tvgdD-----KtvK~wk~~~~-p~~t---------------ilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~ 175 (433)
T KOG0268|consen 120 ---TSFFTVGDD-----KTVKQWKIDGP-PLHT---------------ILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQ 175 (433)
T ss_pred ---cceEEecCC-----cceeeeeccCC-ccee---------------eeccccccccccccccccccccCceeeecccc
Confidence 333333333 23444444332 0111 11111111 11211222334455578899986
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEE-ec-CCcEEEeccCCCcee-ecccccCCcceeeC
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS-SA-DEDYSLLAKSVPPLL-DFETKLKDGSQSHS 240 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~-~~-d~~i~~w~~~~~~~~-~~~~~h~g~V~~~s 240 (826)
.. .+..++.+-.+.|.+++|+|....++. +. |+.|.+|+....... .....-...-.||+
T Consensus 176 R~-----------------~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Iswn 238 (433)
T KOG0268|consen 176 RD-----------------NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWN 238 (433)
T ss_pred cC-----------------CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecC
Confidence 51 012346778889999999998876665 43 999999976543222 11111111122399
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
|..-.+++|.+|..+..+|+..-.. + ......|..+|..|+|+|.|+.|++||.|.+|+||..+.+...
T Consensus 239 PeafnF~~a~ED~nlY~~DmR~l~~-p--------~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR-- 307 (433)
T KOG0268|consen 239 PEAFNFVAANEDHNLYTYDMRNLSR-P--------LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR-- 307 (433)
T ss_pred ccccceeeccccccceehhhhhhcc-c--------chhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcch--
Confidence 9888999999999999999832210 1 1223568899999999999999999999999999999854321
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~ 379 (826)
+ +-..+--+.|.|+.||.|.+++++||+|+.|++|-..-..
T Consensus 308 ----------d--------iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 308 ----------D--------IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred ----------h--------hhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 0 1011113459999999999999999999999999875443
No 132
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.71 E-value=1.8e-16 Score=162.44 Aligned_cols=208 Identities=17% Similarity=0.263 Sum_probs=154.5
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec---CCcEEEeccC-----------------CCceeecccccCCccee--eCCCCC-
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA---DEDYSLLAKS-----------------VPPLLDFETKLKDGSQS--HSKVKN- 244 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~---d~~i~~w~~~-----------------~~~~~~~~~~h~g~V~~--~s~~~~- 244 (826)
...|.+.+..+...+-+.-.++++ .|.|.+|+.. ..++.++ .+|.+.=.+ |+|--.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccccccc
Confidence 456777777777777654444433 6789999522 1233333 456654444 888333
Q ss_pred EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccce
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~ 323 (826)
.|+||-.-+.|++|..+.... .+. ...+.+|..+|-.|+|+|. ...|++||.||+|+|||++.++..
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W----~vd---~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~----- 293 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSW----KVD---QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK----- 293 (440)
T ss_pred ccccCccccceEeeeeccCce----eec---CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc-----
Confidence 488888889999999955552 222 3346779999999999995 579999999999999999965331
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecc
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~ 403 (826)
.+ +....|++.|..|.|+....+||+|++||+++|||+|+.+.-........|..+|+++.|+|.
T Consensus 294 ----------~~----~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~- 358 (440)
T KOG0302|consen 294 ----------AA----VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH- 358 (440)
T ss_pred ----------ce----eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc-
Confidence 11 444667889999999999889999999999999999875432111222368899999999997
Q ss_pred cCCCCCcEEEEEECCCcEEEEECC
Q 003360 404 LQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 404 ~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+...|++++.|..|.+||+.
T Consensus 359 ----e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 359 ----EDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ----cCceEEeccCCCcEEEEEee
Confidence 67889999999999999987
No 133
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.70 E-value=1.1e-14 Score=159.70 Aligned_cols=371 Identities=12% Similarity=0.102 Sum_probs=231.6
Q ss_pred cccccccccceEEEecCCCC--CEEEEEEecCcEEEEeCCCccccc---cccc--cccccccc--------cccCC--CC
Q 003360 7 QSVYHETKQVTSACWACPIG--SKVAVGYSNGEILIWGVPSILNLK---TEEC--GTQITPIC--------KLNLG--YK 69 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g--~~latg~~DGsI~iWd~~~~~~~~---~~~~--~~~~~~~~--------~~~~~--~~ 69 (826)
..+..|+-=|.++.|..+.| .+||++++|..|+||.+.-..... .... ...+.|.. ++.+. -.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 34455777899999988766 588999999999999987552110 0000 01112221 11111 12
Q ss_pred CCcCCeEEEEEeeeCCCCceEEEEccCCcCccceeEEEEcccCCcce--eEEEeecC--CCceeeEEEecCCCCCCCCCC
Q 003360 70 LDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESR--TTKLALPL--SEPCIDMEIISSSSDPNKPKQ 145 (826)
Q Consensus 70 ~~~~pI~~l~W~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~--~~~~~l~~--~~~~~d~~~l~~~~~~~~~~~ 145 (826)
.|..-|..+.|.. .+..+++... +..+-+|.-+..++.- .+++.--- .+-|-+..+.+ +.
T Consensus 265 GHeDWV~sv~W~p----~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~--------n~ 328 (764)
T KOG1063|consen 265 GHEDWVYSVWWHP----EGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP--------NS 328 (764)
T ss_pred CcccceEEEEEcc----chhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcC--------CC
Confidence 3556677888865 2322233222 2345555555555442 22222111 11123332322 22
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC--C
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS--V 222 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~--~ 222 (826)
..++.-+-.|-+++|-...- . .......+.+|-..|+.+.|.|.|.++++.+ |.+-|++..- .
T Consensus 329 ~~ii~~g~~Gg~hlWkt~d~---------~-----~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q 394 (764)
T KOG1063|consen 329 NVIIAHGRTGGFHLWKTKDK---------T-----FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ 394 (764)
T ss_pred CEEEEecccCcEEEEeccCc---------c-----ceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccc
Confidence 55667777899999972220 0 0111233689999999999999999999998 9999888322 1
Q ss_pred Cceeec--ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCce------------------------------eee
Q 003360 223 PPLLDF--ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLF------------------------------LLI 268 (826)
Q Consensus 223 ~~~~~~--~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~------------------------------~~i 268 (826)
..-..+ ..-|...+.| +-+..-.+++|.+...+|++++..... ..+
T Consensus 395 ~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 395 QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 122233 2336666777 444466788888888999998521000 000
Q ss_pred ee-----------------------cc-------------cccccccccCCCCeEEEEEeCCCCEEEEEeCCC-----cE
Q 003360 269 LS-----------------------LK-------------QQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-----MV 307 (826)
Q Consensus 269 ~~-----------------------l~-------------~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-----~V 307 (826)
+. +. .+.+..+-+|+..|.+++.+|++.++|++.... .|
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVI 554 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence 00 00 001123457889999999999999999987653 57
Q ss_pred EEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE-Eeeec
Q 003360 308 RIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL-YQKHI 386 (826)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l-~~~~~ 386 (826)
++|+...-... -....|.-.|+.|+|||||++|++.+.|.++.+|........ +.+..
T Consensus 555 ~lw~t~~W~~~---------------------~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~ 613 (764)
T KOG1063|consen 555 RLWNTANWLQV---------------------QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC 613 (764)
T ss_pred EEEeccchhhh---------------------heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcc
Confidence 88886532210 123345557999999999999999999999999988433222 23344
Q ss_pred ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC--ceEEe
Q 003360 387 ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG--NMLST 434 (826)
Q Consensus 387 ~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg--~~i~~ 434 (826)
...|..-|+...|+| ++.+++++|.|.+|++|....+ +++..
T Consensus 614 ~k~HtRIIWdcsW~p------de~~FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 614 LKAHTRIIWDCSWSP------DEKYFATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred ccccceEEEEcccCc------ccceeEEecCCceEEEEeccCchhhhhhh
Confidence 567888899999999 5888999999999999999877 55544
No 134
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.4e-15 Score=163.85 Aligned_cols=319 Identities=15% Similarity=0.181 Sum_probs=204.3
Q ss_pred ccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCce
Q 003360 10 YHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASR 89 (826)
Q Consensus 10 ~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ 89 (826)
..|...|.|+.- .|.|..||+|+.||+|++|.+.++.- +..+++.. -|.+|+|+. .+.-+.
T Consensus 397 rGHtg~Vr~iSv-dp~G~wlasGsdDGtvriWEi~TgRc------------vr~~~~d~-----~I~~vaw~P-~~~~~v 457 (733)
T KOG0650|consen 397 RGHTGLVRSISV-DPSGEWLASGSDDGTVRIWEIATGRC------------VRTVQFDS-----EIRSVAWNP-LSDLCV 457 (733)
T ss_pred eccCCeEEEEEe-cCCcceeeecCCCCcEEEEEeecceE------------EEEEeecc-----eeEEEEecC-CCCcee
Confidence 346778889996 57999999999999999999999833 33333322 588999987 334455
Q ss_pred EEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHH
Q 003360 90 LYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYL 169 (826)
Q Consensus 90 lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~ 169 (826)
|.++-|.. ++.++..-+.+ +.....+- ++.+.+ ... ..++++..|......
T Consensus 458 LAvA~~~~--------~~ivnp~~G~~-------~e~~~t~e-ll~~~~--~~~--------~p~~~~~~W~~~~~~--- 508 (733)
T KOG0650|consen 458 LAVAVGEC--------VLIVNPIFGDR-------LEVGPTKE-LLASAP--NES--------EPDAAVVTWSRASLD--- 508 (733)
T ss_pred EEEEecCc--------eEEeCccccch-------hhhcchhh-hhhcCC--Ccc--------CCcccceeechhhhh---
Confidence 55555441 12121111100 00000000 010000 000 112355566655421
Q ss_pred hhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-C-C--cEEEeccCC-CceeecccccCCccee--eCCC
Q 003360 170 LQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-D-E--DYSLLAKSV-PPLLDFETKLKDGSQS--HSKV 242 (826)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d-~--~i~~w~~~~-~~~~~~~~~h~g~V~~--~s~~ 242 (826)
...+ -.. ..-.|...|+.+.|+..|+++++.. + + .|.+..... .....| ....|-|.+ |+|.
T Consensus 509 --e~~~-------~v~-~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF-~kskG~vq~v~FHPs 577 (733)
T KOG0650|consen 509 --ELEK-------GVC-IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPF-RKSKGLVQRVKFHPS 577 (733)
T ss_pred --hhcc-------ceE-EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCch-hhcCCceeEEEecCC
Confidence 1101 111 2345778999999999999999965 3 2 344442211 112333 233455555 9999
Q ss_pred CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccc
Q 003360 243 KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 243 ~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~ 322 (826)
..+|+++++. .|||||+....+ +.++. .....|..++.+|.|..|+.|+.|+.+..||+.-+..
T Consensus 578 ~p~lfVaTq~-~vRiYdL~kqel--vKkL~--------tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk----- 641 (733)
T KOG0650|consen 578 KPYLFVATQR-SVRIYDLSKQEL--VKKLL--------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK----- 641 (733)
T ss_pred CceEEEEecc-ceEEEehhHHHH--HHHHh--------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc-----
Confidence 9999988875 899999955542 22222 2335899999999999999999999999999984422
Q ss_pred eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEe------cCCCeeEEeeecccCCCC----
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD------TEGPTVLYQKHIASDISS---- 392 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD------~~~~~~l~~~~~~~~~~~---- 392 (826)
+. -.+..|...|++++|++...++++|+.||++.|+. +.+.-++.-.....+|..
T Consensus 642 -----------Py----k~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~ 706 (733)
T KOG0650|consen 642 -----------PY----KTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDL 706 (733)
T ss_pred -----------hh----HHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeeccc
Confidence 10 12234567799999999999999999999999984 333334444444455544
Q ss_pred CeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
.|....|+|. ..+|++++.||+|++|
T Consensus 707 gVLd~~wHP~------qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 707 GVLDTIWHPR------QPWLFSAGADGTIRLF 732 (733)
T ss_pred ceEeecccCC------CceEEecCCCceEEee
Confidence 4888999995 8999999999999998
No 135
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.70 E-value=2.3e-15 Score=154.29 Aligned_cols=237 Identities=14% Similarity=0.155 Sum_probs=163.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCe-EEEec-CCcEEEeccC-C
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF-ILSSA-DEDYSLLAKS-V 222 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~-~ 222 (826)
......+..|++.+||....-..+...+ ...........++...|...=..+.|||-... +++|. -+.|.+|... .
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~-~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPG-LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCcc-ccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence 4445667889999999987544332222 11111244455677889988899999994443 34444 5678999432 2
Q ss_pred Cceeec--ccccCCccee--eCCCC-CEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCC
Q 003360 223 PPLLDF--ETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR 296 (826)
Q Consensus 223 ~~~~~~--~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~ 296 (826)
.|...- ..+|+..|.. |+|.. ..+++|+.||+|||||+ +++....++. +.|..-|+.|+|+..-.
T Consensus 245 ~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---------kAh~sDVNVISWnr~~~ 315 (440)
T KOG0302|consen 245 SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---------KAHNSDVNVISWNRREP 315 (440)
T ss_pred ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---------eccCCceeeEEccCCcc
Confidence 232221 2569999988 88865 48999999999999999 5544322222 46889999999999888
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEec
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~ 375 (826)
+||+|+.||+++|||++.-+. +.++ ..+..|+.+|++|.|+|. ...+++++.|.+|.+||+
T Consensus 316 lLasG~DdGt~~iwDLR~~~~--------------~~pV----A~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKS--------------GQPV----ATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eeeecCCCceEEEEEhhhccC--------------CCcc----eeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 999999999999999994322 1121 556678999999999984 457888899999999998
Q ss_pred CCC-------------------eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 376 EGP-------------------TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 376 ~~~-------------------~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
.-- +++|. +.-...|..+.|++. -..+|++.+.||
T Consensus 378 svE~D~ee~~~~a~~~L~dlPpQLLFV----HqGQke~KevhWH~Q-----iPG~lvsTa~dG 431 (440)
T KOG0302|consen 378 SVEADEEEIDQEAAEGLQDLPPQLLFV----HQGQKEVKEVHWHRQ-----IPGLLVSTAIDG 431 (440)
T ss_pred eccCChhhhccccccchhcCCceeEEE----ecchhHhhhheeccC-----CCCeEEEecccc
Confidence 421 12221 122335667777774 256777777777
No 136
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=2.1e-15 Score=157.77 Aligned_cols=187 Identities=19% Similarity=0.338 Sum_probs=141.0
Q ss_pred CCCeEEEec-CCcEEEeccCC----Cceeec-----------------ccccCCccee--eC-CCCCEEEEEECCCcEEE
Q 003360 203 GNSFILSSA-DEDYSLLAKSV----PPLLDF-----------------ETKLKDGSQS--HS-KVKNLFITGHSDGAINF 257 (826)
Q Consensus 203 ~~~~l~~~~-d~~i~~w~~~~----~~~~~~-----------------~~~h~g~V~~--~s-~~~~~l~Tgs~DGtVri 257 (826)
.|.++|.|. |-.|-+|+... -+...+ ..+|+..|.+ |. ..+++||+|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 367888888 99999995321 011111 1357777766 33 35679999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
||+..... ...+..|+..|.++.|+|. ...|++|+.|++|+++|.+.....
T Consensus 271 WD~~~g~p----------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s------------------ 322 (463)
T KOG0270|consen 271 WDVDTGKP----------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS------------------ 322 (463)
T ss_pred EEcCCCCc----------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc------------------
Confidence 99944331 1223457899999999996 578999999999999999842221
Q ss_pred EEEEEEeeccCCeEEEEEccCCC-EEEEEecCCeEEEEecCCC-eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 337 IHSVKVMKINGSIISLNMNRNSQ-HLAVGSDQGYVYLLDTEGP-TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V~vwD~~~~-~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
-+.....+.|-.++|.|... .++++..||+|+-+|+|+. +++++.. .|..+|.+|+++.. ...++.+
T Consensus 323 ---~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~---AHd~~ISgl~~n~~-----~p~~l~t 391 (463)
T KOG0270|consen 323 ---GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK---AHDDEISGLSVNIQ-----TPGLLST 391 (463)
T ss_pred ---CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE---eccCCcceEEecCC-----CCcceee
Confidence 12223467899999988654 5677889999999999987 7777765 78889999999885 3678999
Q ss_pred EECCCcEEEEECCC
Q 003360 415 ATKDSSVLVLDSDN 428 (826)
Q Consensus 415 gs~Dg~V~iwd~~t 428 (826)
++.|+.|++|+...
T Consensus 392 ~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDV 405 (463)
T ss_pred ccccceEEEEeecC
Confidence 99999999999874
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=7.6e-15 Score=147.06 Aligned_cols=224 Identities=11% Similarity=0.102 Sum_probs=158.4
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEecc-C--CCceeecccc-cCCccee--e-C-CCCCEEEEEECCCcEEEEe
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAK-S--VPPLLDFETK-LKDGSQS--H-S-KVKNLFITGHSDGAINFWD 259 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~-~--~~~~~~~~~~-h~g~V~~--~-s-~~~~~l~Tgs~DGtVriWD 259 (826)
..|..-|+++.|.+-|+.+++++ |+++++|+. + ..+..+-.|. |.+.|+. | + ..|+.+|+++.|++|+||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 57888999999999999999998 999999972 2 2344444443 8888887 3 3 4799999999999999998
Q ss_pred CC-------CCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCC------CC-------
Q 003360 260 VS-------CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYE------PH------- 317 (826)
Q Consensus 260 ~s-------~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~------~~------- 317 (826)
-. +.......+ +.-....|+.|.|+|. |..||+++.||+||||+.-.- +.
T Consensus 90 E~~~~~~~~~~~Wv~~tt--------l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTT--------LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred ecccccccccceeEEEEE--------eecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 52 112211112 2234479999999995 778999999999999986432 00
Q ss_pred -----ccccceEEEeecCCCC-----------------eEEEEE-----------EEEeeccCCeEEEEEccC----CCE
Q 003360 318 -----AIENSFLSFTGSKKGN-----------------SHIIHS-----------VKVMKINGSIISLNMNRN----SQH 360 (826)
Q Consensus 318 -----~~~~~~~~i~~s~~~~-----------------~~~~~~-----------~~~~~~~~~V~~l~~s~~----g~~ 360 (826)
.+.....++++++... ...+.. .....+..+|++|+|.|+ +..
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence 0112223344432110 011111 112245778999999995 457
Q ss_pred EEEEecCCeEEEEecCCCe------------e-----EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 361 LAVGSDQGYVYLLDTEGPT------------V-----LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 361 lasGs~dG~V~vwD~~~~~------------~-----l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
||+++.|| |+||.+.... . +......++|.+.|+.+.|.-. |..|.+.+.||.|++
T Consensus 242 lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt------GtiLsStGdDG~VRL 314 (361)
T KOG2445|consen 242 LAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT------GTILSSTGDDGCVRL 314 (361)
T ss_pred EEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee------eeEEeecCCCceeee
Confidence 99999999 9999987311 1 1122335689999999999985 999999999999999
Q ss_pred EECC
Q 003360 424 LDSD 427 (826)
Q Consensus 424 wd~~ 427 (826)
|...
T Consensus 315 Wkan 318 (361)
T KOG2445|consen 315 WKAN 318 (361)
T ss_pred hhhh
Confidence 9875
No 138
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.7e-15 Score=151.44 Aligned_cols=206 Identities=18% Similarity=0.224 Sum_probs=160.0
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-----------------------------------------C
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-----------------------------------------P 223 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-----------------------------------------~ 223 (826)
....+|.+.|++++|++.+..+++++ |++..+|.... .
T Consensus 184 ~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv 263 (481)
T KOG0300|consen 184 ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV 263 (481)
T ss_pred eeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence 34579999999999999999999988 99999994100 0
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
++.. ..+|.+.|.+ |-..++.++|++.|.+..+||+...+. +..+.+|+...+.++-+|..++++++
T Consensus 264 Pl~~-ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~----------v~~LtGHd~ELtHcstHptQrLVvTs 332 (481)
T KOG0300|consen 264 PLMR-LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV----------VNILTGHDSELTHCSTHPTQRLVVTS 332 (481)
T ss_pred eeee-eeccccceEehhhhcCcceeeeeeccccceeeeeccCce----------eccccCcchhccccccCCcceEEEEe
Confidence 1111 2557777777 888999999999999999999955552 23346888899999999999999999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee-
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV- 380 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~- 380 (826)
+.|-+.++|||+.. +.++ ..+..|...|+++.|..+. .+++|++|.+|+|||+++..-
T Consensus 333 SrDtTFRLWDFRea-------I~sV-------------~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 333 SRDTTFRLWDFREA-------IQSV-------------AVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred ccCceeEeccchhh-------ccee-------------eeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCc
Confidence 99999999999821 1111 4456678889999999887 599999999999999987543
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
+.+. ...+++..++.+.. +.+|+.-..+..|++||++ |..+..
T Consensus 392 lATI----RtdS~~NRvavs~g------~~iIAiPhDNRqvRlfDln-G~RlaR 434 (481)
T KOG0300|consen 392 LATI----RTDSPANRVAVSKG------HPIIAIPHDNRQVRLFDLN-GNRLAR 434 (481)
T ss_pred ceee----ecCCccceeEeecC------CceEEeccCCceEEEEecC-CCcccc
Confidence 3222 34567888888872 5677777777899999998 555544
No 139
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.66 E-value=3.6e-14 Score=139.59 Aligned_cols=198 Identities=12% Similarity=0.167 Sum_probs=154.2
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM 306 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~ 306 (826)
.+|..+++. +..+|.+|.+++.|.++.+|-. .+.. ....++|.++|+|++.+.++..|++|+.|.+
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-----------lGty~GHtGavW~~Did~~s~~liTGSAD~t 75 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-----------LGTYDGHTGAVWCCDIDWDSKHLITGSADQT 75 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-----------eeeecCCCceEEEEEecCCcceeeeccccce
Confidence 679999988 9999999999999999999998 5544 2334689999999999999999999999999
Q ss_pred EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-----CCeEEEEecCC----
Q 003360 307 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-----QGYVYLLDTEG---- 377 (826)
Q Consensus 307 V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-----dG~V~vwD~~~---- 377 (826)
++|||+.+++. +...+.+.+|..+.|+.+|++++...+ .+.|.++|++.
T Consensus 76 ~kLWDv~tGk~----------------------la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~ 133 (327)
T KOG0643|consen 76 AKLWDVETGKQ----------------------LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD 133 (327)
T ss_pred eEEEEcCCCcE----------------------EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh
Confidence 99999996544 556667889999999999998877765 36799999983
Q ss_pred ---CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe-eeccCCCCCcceEEEEecC
Q 003360 378 ---PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST-NLIHPKKPSRALFMQILNG 453 (826)
Q Consensus 378 ---~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~-~~~~~~~~~~~lsi~~l~~ 453 (826)
..+++... -+.+.+++.-|.+. +.+|++|..||.|.+||.++|+.+.. -..|.. .+-.|+
T Consensus 134 ~~s~ep~~kI~---t~~skit~a~Wg~l------~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~---~Ind~q---- 197 (327)
T KOG0643|consen 134 IDSEEPYLKIP---TPDSKITSALWGPL------GETIIAGHEDGSISIYDARTGKELVDSDEEHSS---KINDLQ---- 197 (327)
T ss_pred hcccCceEEec---CCccceeeeeeccc------CCEEEEecCCCcEEEEEcccCceeeechhhhcc---cccccc----
Confidence 33443333 34478999999996 99999999999999999999965533 222221 111222
Q ss_pred CCCcccCccccccccccCCCCCCCCCCC-CCEEEEeecCcEEEEeccc
Q 003360 454 QDGLARGANLSNVAGMNKGSPKENAVPK-QWFVLLCSEKAACAYSLSH 500 (826)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~se~~irv~sl~~ 500 (826)
+.++ --||..|.|.+.++|++..
T Consensus 198 ------------------------~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 198 ------------------------FSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred ------------------------ccCCcceEEecccCccceeeeccc
Confidence 2223 3466677788999999874
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.66 E-value=2e-14 Score=142.89 Aligned_cols=206 Identities=13% Similarity=0.202 Sum_probs=153.1
Q ss_pred ecccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCCc-----------ee----ecccccCCccee--eCC-CCCEEE
Q 003360 188 MPFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVPP-----------LL----DFETKLKDGSQS--HSK-VKNLFI 247 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~~-----------~~----~~~~~h~g~V~~--~s~-~~~~l~ 247 (826)
...|.+.|..+..-+ .|+++++|+ |+.+.+|+.+... .. .-+.+|+-+|.+ |.| |.-++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 467889999999966 688999988 9999999533211 11 114567888887 666 455888
Q ss_pred EEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC---CEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 248 TGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS---RVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 248 Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~---~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
+++-|.++++||..+-+....++++ ..|..-+++|-. -++|+|..|-.|++.|+..+.+.
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me-----------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s------ 181 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKME-----------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS------ 181 (397)
T ss_pred cccccceEEEeecccceeeEEeecC-----------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce------
Confidence 9999999999999544422222222 466677777743 36788888889999999976653
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCE-EEEEecCCeEEEEecCCC-eeEEeee-----------cccCCC
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQH-LAVGSDQGYVYLLDTEGP-TVLYQKH-----------IASDIS 391 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~-lasGs~dG~V~vwD~~~~-~~l~~~~-----------~~~~~~ 391 (826)
..+..|.+.|.++.|+|...+ ||+|+.||.|++||++.. .|...+. ....|.
T Consensus 182 ---------------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~ 246 (397)
T KOG4283|consen 182 ---------------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY 246 (397)
T ss_pred ---------------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccc
Confidence 234557888999999998765 689999999999999876 3332221 123466
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCce
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
+.|..++|.. |+.++++++.|..+++|+..+|+-
T Consensus 247 gkvngla~tS------d~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 247 GKVNGLAWTS------DARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ceeeeeeecc------cchhhhhccCccceEEeecccCcc
Confidence 7788999988 699999999999999999998863
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.65 E-value=1.4e-14 Score=152.05 Aligned_cols=305 Identities=17% Similarity=0.233 Sum_probs=184.0
Q ss_pred cccccceEEEecCCCC-CEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCce
Q 003360 11 HETKQVTSACWACPIG-SKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASR 89 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g-~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ 89 (826)
.....|+|+.||+... +.||+|..-|.|-|||+.+..... ..++. ...+..||..+.+...+.. .
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~--------d~v~~----f~~hs~~Vs~l~F~P~n~s--~ 249 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK--------DGVYL----FTPHSGPVSGLKFSPANTS--Q 249 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc--------CceEE----eccCCccccceEecCCChh--h
Confidence 3578999999997666 899999999999999997421000 01111 2234567888877664322 2
Q ss_pred EEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHH
Q 003360 90 LYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYL 169 (826)
Q Consensus 90 lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~ 169 (826)
+|...-+. .+....++..... ..+.+.. |-..++.. . -...+..++.+.+-|.+.+||...
T Consensus 250 i~ssSyDG-----tiR~~D~~~~i~e----~v~s~~~---d~~~fs~~-d-~~~e~~~vl~~~~~G~f~~iD~R~----- 310 (498)
T KOG4328|consen 250 IYSSSYDG-----TIRLQDFEGNISE----EVLSLDT---DNIWFSSL-D-FSAESRSVLFGDNVGNFNVIDLRT----- 310 (498)
T ss_pred eeeeccCc-----eeeeeeecchhhH----HHhhcCc---cceeeeec-c-ccCCCccEEEeecccceEEEEeec-----
Confidence 22221111 1112222111100 1111110 11111111 0 112234567777888899999877
Q ss_pred hhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEE
Q 003360 170 LQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITG 249 (826)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tg 249 (826)
.+.....+..|+-.|+.++++|.+++ +||||
T Consensus 311 -----------~~s~~~~~~lh~kKI~sv~~NP~~p~--------------------------------------~laT~ 341 (498)
T KOG4328|consen 311 -----------DGSEYENLRLHKKKITSVALNPVCPW--------------------------------------FLATA 341 (498)
T ss_pred -----------CCccchhhhhhhcccceeecCCCCch--------------------------------------heeec
Confidence 11112235678888999998887654 69999
Q ss_pred ECCCcEEEEeCCC--Ccee-eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEE
Q 003360 250 HSDGAINFWDVSC--PLFL-LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 250 s~DGtVriWD~s~--~~~~-~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
+.|++++|||+.. .... .+..+ .|..+|.+..|+|.+..|++.+.|..|+|||..--..
T Consensus 342 s~D~T~kIWD~R~l~~K~sp~lst~---------~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa--------- 403 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRGKASPFLSTL---------PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA--------- 403 (498)
T ss_pred ccCcceeeeehhhhcCCCCcceecc---------cccceeeeeEEcCCCCceEeeccCCceEEeecccccc---------
Confidence 9999999999821 1111 12222 4778999999999998899999999999999841000
Q ss_pred eecCCC-CeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEE-EEeeccc
Q 003360 327 TGSKKG-NSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSL-QFETCSL 404 (826)
Q Consensus 327 ~~s~~~-~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl-~f~~~~~ 404 (826)
.+. ...+.|...++.+-. ..-..|.|+..++++|..-..|-|+|-..++.+..+. ......|.++ .|+|+
T Consensus 404 ---~~~p~~~I~Hn~~t~RwlT-~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~--~P~~~tI~~vn~~HP~-- 475 (498)
T KOG4328|consen 404 ---KDEPLGTIPHNNRTGRWLT-PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH--DPESSTIPSVNEFHPM-- 475 (498)
T ss_pred ---cCCccceeeccCccccccc-chhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc--Cccccccccceeeccc--
Confidence 010 011111122222222 3345799999999999999999999999998774433 3344456554 58886
Q ss_pred CCCCCc-EEEEEECCCcEEEEECC
Q 003360 405 QGFEKN-FLVIATKDSSVLVLDSD 427 (826)
Q Consensus 405 ~~~d~~-~l~sgs~Dg~V~iwd~~ 427 (826)
.. +++-++..|.|+||-..
T Consensus 476 ----~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 476 ----RDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ----ccceeccCCccceEEEEecC
Confidence 55 44444567888988765
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.64 E-value=2e-14 Score=151.70 Aligned_cols=206 Identities=15% Similarity=0.204 Sum_probs=153.4
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
.+++.++..|.+-+||+.. .+ .+..+..|.+.|+++.|+-...++++++ .|.|.+.......
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~--kl---------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRA--KL---------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ 154 (673)
T ss_pred eeeeccCcCceeeehhhHH--HH---------------HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc
Confidence 5667788889999999975 12 2334678999999999999999999999 6778877544322
Q ss_pred eeecccccC-Ccce-e--eCCCCC-EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEE
Q 003360 225 LLDFETKLK-DGSQ-S--HSKVKN-LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVL 298 (826)
Q Consensus 225 ~~~~~~~h~-g~V~-~--~s~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~L 298 (826)
..+- ..|. |.+. - +++..+ +|.+++.+|.|.+||+.+... ++... ..|..+...|+|+|.. .+|
T Consensus 155 ~tt~-f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--~~~~~-------~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 155 KTTT-FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--IFHAS-------EAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred cccc-eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--ccchh-------hhccCCcCcceecCCccceE
Confidence 2211 2232 2222 2 777554 788899999999999966552 12222 4688999999999976 577
Q ss_pred EEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC
Q 003360 299 VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP 378 (826)
Q Consensus 299 asgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~ 378 (826)
++-+.|..|.+||.+.... ........|.++++|+++|.+|+.|+..|.|..||++..
T Consensus 225 vsVG~Dkki~~yD~~s~~s----------------------~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQAS----------------------TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred EEecccceEEEeecccccc----------------------cceeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 8889999999999984322 222233668899999999999999999999999999976
Q ss_pred eeEEeeecccCCCCCeeEEEEeec
Q 003360 379 TVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 379 ~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
+-. ....+.|...|++++|.+.
T Consensus 283 k~P--v~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 283 KAP--VAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred CCC--ceEeeecccceeEEEeeec
Confidence 544 2333578888999999983
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.3e-14 Score=150.61 Aligned_cols=288 Identities=14% Similarity=0.136 Sum_probs=187.2
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEec--cCCCceeecccccCCccee--eCCCCC-EEEEEECCCcEEEEeCCCCce
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLA--KSVPPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~--~~~~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD~s~~~~ 265 (826)
.+.|+++.|+|.-+.+++++ |+++++|. .+..+...-..--.-+|.+ |+|+|. .+++++.......||+.....
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999 99999993 3322222110112334444 999999 999999999999999943332
Q ss_pred eeeeecccccccccccC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 266 LLILSLKQQSEKDFSLS-GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h-~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
..+..+. ++ ...+.....+|++.+++..+..|.|.|....++.. +...+
T Consensus 293 ~k~~~~~--------g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el----------------------i~s~K 342 (514)
T KOG2055|consen 293 TKLKPPY--------GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL----------------------ITSFK 342 (514)
T ss_pred ccccCCC--------CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh----------------------hheee
Confidence 2211111 11 14566778899999999999999999988776544 44455
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 345 INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
.++.|..++|+.+|+.|++.+.+|.|.+||+++..|++.+.- ...-.-++++-+. ++.+|++||..|.|.||
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D--~G~v~gts~~~S~------ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD--DGSVHGTSLCISL------NGSYLATGSDSGIVNIY 414 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee--cCccceeeeeecC------CCceEEeccCcceEEEe
Confidence 688999999999999999999999999999999999976652 2222334555555 48899999999999999
Q ss_pred ECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeec---CcEEEEecccc
Q 003360 425 DSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSE---KAACAYSLSHA 501 (826)
Q Consensus 425 d~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se---~~irv~sl~~~ 501 (826)
|..+... . ..+.|...+ ..+......-.|.++.+++.+|+. +.+|+..+++
T Consensus 415 d~~s~~~--s---~~PkPik~~--------------------dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS- 468 (514)
T KOG2055|consen 415 DGNSCFA--S---TNPKPIKTV--------------------DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS- 468 (514)
T ss_pred ccchhhc--c---CCCCchhhh--------------------hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc-
Confidence 9763211 1 111111100 000000000135566677777765 5799999884
Q ss_pred ccccceeeeeeecCCCCceeeEeee-eCCceEEEEEEeeceEEEecc
Q 003360 502 VQGVKKVLYKKKFHSSSCCWASTFY-SGSDVGLMLLFTSGKFEIRSL 547 (826)
Q Consensus 502 ~~g~~k~~~k~~~~~~~c~~~~~~~-~~~~~~lv~~~~~G~I~i~sl 547 (826)
...+..-.-..........+. ++++--|++.-..|.+.+|-|
T Consensus 469 ----~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 469 ----CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ----eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 222221100001111111111 256666777778888877754
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.64 E-value=1.8e-14 Score=156.68 Aligned_cols=256 Identities=14% Similarity=0.178 Sum_probs=162.7
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
...|++...+|.+.++|...+.- + +..........|...|..+++.|....|++++ |.+++.|+....
T Consensus 64 eHiLavadE~G~i~l~dt~~~~f-----r------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVF-----R------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred cceEEEecCCCceeeecchhhhc-----c------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 34567888899999999887421 1 11111233468999999999999666777776 999999977654
Q ss_pred ceeec--ccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCCCceeeeeec-------ccc----------ccccccc
Q 003360 224 PLLDF--ETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSCPLFLLILSL-------KQQ----------SEKDFSL 281 (826)
Q Consensus 224 ~~~~~--~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~~~~~~i~~l-------~~~----------~~~~~~~ 281 (826)
.+... ..+|++.|.+ |++.. ..++||+.||.|.|||........+... ... ....-..
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 44443 5789999988 87754 5899999999999999833221000000 000 0001112
Q ss_pred CCC----CeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec---cCCeEEEE
Q 003360 282 SGI----PLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI---NGSIISLN 353 (826)
Q Consensus 282 h~~----~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~---~~~V~~l~ 353 (826)
+.. .|+.+.| .|...||+++. |+.|+|||++++.......... . .++..+ .-.+++|.
T Consensus 213 ~s~ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~--------~-----~~~~t~skrs~G~~nL~ 278 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG--------S-----DKYPTHSKRSVGQVNLI 278 (720)
T ss_pred ccCceeeeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCCc--------c-----cCccCcccceeeeEEEE
Confidence 333 3555554 56678888777 9999999999875432111100 0 011111 22478899
Q ss_pred EccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 354 MNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 354 ~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
....|.+|.+.+.|++|++||+.+..+--... ..+ ..+.++.... ....|+.+|++|+.|...++|.+.+.+
T Consensus 279 lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~-~sg--~~~~sf~vks--~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 279 LDSSGTYLFASCTDNSIYFYNMRSLSISPVAE-FSG--KLNSSFYVKS--ELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred ecCCCCeEEEEecCCcEEEEeccccCcCchhh-ccC--cccceeeeee--ecCCCCceEeccCCCcceeeeeecCcc
Confidence 99999999888889999999998654321110 011 1111111111 122379999999999999999998654
No 145
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.64 E-value=4.5e-13 Score=143.88 Aligned_cols=207 Identities=11% Similarity=0.118 Sum_probs=136.8
Q ss_pred EEEEEEeeCCCeEEEe-c-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCC-cEEEEeCCCCceeeee
Q 003360 195 ITAMKLITGNSFILSS-A-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDG-AINFWDVSCPLFLLIL 269 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~-~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DG-tVriWD~s~~~~~~i~ 269 (826)
+..+.|+++++.++++ . ++.+.+|+......... ..+...+.+ ++|++++++++..++ .+.+||...... +.
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~--~~ 151 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE-IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI--VD 151 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE-eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE--EE
Confidence 4567899999987664 4 78999997654332221 111222333 999999999998876 467789844332 11
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCC
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGS 348 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~ 348 (826)
.+. ....+.+++|+|+++.|+++ ..++.|++||++++... ..+.+...+ . ......
T Consensus 152 ~~~---------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~-----~~~~~~~~~-------~--~~~~~~ 208 (300)
T TIGR03866 152 NVL---------VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI-----KKITFEIPG-------V--HPEAVQ 208 (300)
T ss_pred EEE---------cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee-----eeeeecccc-------c--ccccCC
Confidence 111 12345789999999988655 46999999999854321 111100000 0 000112
Q ss_pred eEEEEEccCCCEEEEE-ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE-ECCCcEEEEEC
Q 003360 349 IISLNMNRNSQHLAVG-SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA-TKDSSVLVLDS 426 (826)
Q Consensus 349 V~~l~~s~~g~~lasG-s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg-s~Dg~V~iwd~ 426 (826)
...++|+|++++++++ ..++.|.+||+.+++++.... +...+.++.|+| ++.+|+++ ..++.|++||.
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~------~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL----VGQRVWQLAFTP------DEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----eCCCcceEEECC------CCCEEEEEcCCCCeEEEEEC
Confidence 4568899999986553 456789999999888763322 234688999998 58888876 46899999999
Q ss_pred CCCceEEeeec
Q 003360 427 DNGNMLSTNLI 437 (826)
Q Consensus 427 ~tg~~i~~~~~ 437 (826)
.+++++..+..
T Consensus 279 ~~~~~~~~~~~ 289 (300)
T TIGR03866 279 AALKVIKSIKV 289 (300)
T ss_pred CCCcEEEEEEc
Confidence 99999888754
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=9.4e-14 Score=156.99 Aligned_cols=244 Identities=14% Similarity=0.156 Sum_probs=182.4
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-ceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeC-CCCcee
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-PLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDV-SCPLFL 266 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~-s~~~~~ 266 (826)
.|...-|.++|.++|.++.+++ |+.|+.|+.... ........+...|.+...+++.+++|+.+++|.+|.. ++..-.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~ 90 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT 90 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc
Confidence 6777899999999999999988 999999965543 1111101144455556777789999999999999999 333310
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN 346 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~ 346 (826)
. +..-..++++++|+.+|.++|.|+.|-.|++-++.... +. ..+..|.
T Consensus 91 i-----------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-----------------~~----~~lrgh~ 138 (933)
T KOG1274|consen 91 I-----------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-----------------QE----KVLRGHD 138 (933)
T ss_pred e-----------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-----------------hh----eeecccC
Confidence 1 11122589999999999999999999999999987332 21 5677889
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC-----CCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 347 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD-----ISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~-----~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
++|.+|.|+|.+.+||+.+.||.|+|||+.++.+.++..-... ....+..++|+| ++..+++...|+.|
T Consensus 139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P------k~g~la~~~~d~~V 212 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP------KGGTLAVPPVDNTV 212 (933)
T ss_pred CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC------CCCeEEeeccCCeE
Confidence 9999999999999999999999999999999988755432211 244567788999 58888888999999
Q ss_pred EEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEeccc
Q 003360 422 LVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSH 500 (826)
Q Consensus 422 ~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~ 500 (826)
++|+..++.....+ ..+.....++.. .|+|.+.|+.+++ +++|-||+...
T Consensus 213 kvy~r~~we~~f~L--r~~~~ss~~~~~---------------------------~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 213 KVYSRKGWELQFKL--RDKLSSSKFSDL---------------------------QWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEccCCceeheee--cccccccceEEE---------------------------EEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999988877664 333333323322 3455666777665 56999999973
No 147
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.63 E-value=8.9e-13 Score=141.59 Aligned_cols=273 Identities=12% Similarity=0.169 Sum_probs=170.9
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEE-Eec-CCcEEEeccCCCce
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFIL-SSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~~~~~ 225 (826)
++....+|.+++||..+- .....+..+. .+..++|+++++.++ ++. ++.+++|+......
T Consensus 4 ~~s~~~d~~v~~~d~~t~-----------------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 65 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATL-----------------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV 65 (300)
T ss_pred EEEecCCCEEEEEECCCC-----------------ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 455667899999997551 0112233333 367799999999875 455 88999998655433
Q ss_pred eecccccCCccee-eCCCCCEEE-EEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC
Q 003360 226 LDFETKLKDGSQS-HSKVKNLFI-TGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 303 (826)
Q Consensus 226 ~~~~~~h~g~V~~-~s~~~~~l~-Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~ 303 (826)
......+...... ++|+++.++ ++..|+.|++||+..... +..+. +...+.+++|+|++.++++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~--~~~~~---------~~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 66 IGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKV--LAEIP---------VGVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred EEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE--EeEee---------CCCCcceEEECCCCCEEEEEec
Confidence 3211222222222 899998665 456789999999954431 22222 1234678999999999999988
Q ss_pred CC-cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE-ecCCeEEEEecCCCeeE
Q 003360 304 SG-MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG-SDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 304 dg-~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG-s~dG~V~vwD~~~~~~l 381 (826)
++ .+.+||..+... .........+.+++|+++|++|+++ ..+|.|++||+.+++++
T Consensus 135 ~~~~~~~~d~~~~~~----------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~ 192 (300)
T TIGR03866 135 TTNMAHFIDTKTYEI----------------------VDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI 192 (300)
T ss_pred CCCeEEEEeCCCCeE----------------------EEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee
Confidence 76 466778763321 1111223446789999999988655 46999999999998876
Q ss_pred Eeeeccc--CC--CCCeeEEEEeecccCCCCCcEEEEE-ECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCC
Q 003360 382 YQKHIAS--DI--SSGIVSLQFETCSLQGFEKNFLVIA-TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDG 456 (826)
Q Consensus 382 ~~~~~~~--~~--~~~V~sl~f~~~~~~~~d~~~l~sg-s~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~ 456 (826)
....... .+ ......+.|++ ++.+++++ +.++.|.+||..+++.+...... ..+.++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~s~------dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----~~~~~~~------- 255 (300)
T TIGR03866 193 KKITFEIPGVHPEAVQPVGIKLTK------DGKTAFVALGPANRVAVVDAKTYEVLDYLLVG----QRVWQLA------- 255 (300)
T ss_pred eeeeecccccccccCCccceEECC------CCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC----CCcceEE-------
Confidence 4433211 01 11234577877 57776554 55678999999988877553211 1122222
Q ss_pred cccCccccccccccCCCCCCCCCCCCCEEEEe-e-cCcEEEEeccccccccceeeeeeec
Q 003360 457 LARGANLSNVAGMNKGSPKENAVPKQWFVLLC-S-EKAACAYSLSHAVQGVKKVLYKKKF 514 (826)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-s-e~~irv~sl~~~~~g~~k~~~k~~~ 514 (826)
+++++.+|+++ . ++.|++|++. ..+.+..++.
T Consensus 256 ---------------------~~~~g~~l~~~~~~~~~i~v~d~~-----~~~~~~~~~~ 289 (300)
T TIGR03866 256 ---------------------FTPDEKYLLTTNGVSNDVSVIDVA-----ALKVIKSIKV 289 (300)
T ss_pred ---------------------ECCCCCEEEEEcCCCCeEEEEECC-----CCcEEEEEEc
Confidence 34455566554 3 5789999998 4444555443
No 148
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.59 E-value=5.2e-14 Score=152.85 Aligned_cols=276 Identities=16% Similarity=0.188 Sum_probs=200.9
Q ss_pred CEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCC-CCceeeeee
Q 003360 194 SITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS-CPLFLLILS 270 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~ 270 (826)
.|..++|-|||..++.+.+..+.+|+...+.......+|+.-|.+ ++.+|+.+++|+.|..|.+|... .+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~------ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI------ 87 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce------
Confidence 688899999999999998888888976654444444899999999 99999999999999999999983 333
Q ss_pred cccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeE
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSII 350 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~ 350 (826)
+++ .|++.|.|+.|+|-+..|++++-+. .-+|...... +...+....|.
T Consensus 88 LkY-------SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~-----------------------V~K~kss~R~~ 136 (1081)
T KOG1538|consen 88 LKY-------SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS-----------------------VSKHKSSSRII 136 (1081)
T ss_pred eee-------ccCCeeeEeecCchHHHhhhcchhh-ccccChhhhh-----------------------HHhhhhheeEE
Confidence 453 3889999999999999999997663 4567654111 11112244689
Q ss_pred EEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 351 SLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 351 ~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
+.+|..||++++.|-.||+|.+-+-.....+ ...-+.+.+++|++++|+|..-++ ....+.+..+..++.++.+. |+
T Consensus 137 ~CsWtnDGqylalG~~nGTIsiRNk~gEek~-~I~Rpgg~Nspiwsi~~~p~sg~G-~~di~aV~DW~qTLSFy~Ls-G~ 213 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGTISIRNKNGEEKV-KIERPGGSNSPIWSICWNPSSGEG-RNDILAVADWGQTLSFYQLS-GK 213 (1081)
T ss_pred EeeecCCCcEEEEeccCceEEeecCCCCcce-EEeCCCCCCCCceEEEecCCCCCC-ccceEEEEeccceeEEEEec-ce
Confidence 9999999999999999999998865433222 244456789999999999975544 35688889999999999887 77
Q ss_pred eEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeee
Q 003360 431 MLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLY 510 (826)
Q Consensus 431 ~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~ 510 (826)
++..- -...-.+.|+++ +...+-+++.++++.+.+|.-....-|.
T Consensus 214 ~Igk~---r~L~FdP~CisY---------------------------f~NGEy~LiGGsdk~L~~fTR~GvrLGT----- 258 (1081)
T KOG1538|consen 214 QIGKD---RALNFDPCCISY---------------------------FTNGEYILLGGSDKQLSLFTRDGVRLGT----- 258 (1081)
T ss_pred eeccc---ccCCCCchhhee---------------------------ccCCcEEEEccCCCceEEEeecCeEEee-----
Confidence 77531 111122334333 3334456667788899999765322221
Q ss_pred eeecCCCCceeeEeeee-CCceEEEEEEeeceEEEeccC
Q 003360 511 KKKFHSSSCCWASTFYS-GSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 511 k~~~~~~~c~~~~~~~~-~~~~~lv~~~~~G~I~i~slP 548 (826)
.. ..-.|+..+.. +++...++.++||+|-.+.|-
T Consensus 259 ---vg-~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 259 ---VG-EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ---cc-ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 11 12236666666 899999999999999887654
No 149
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.5e-14 Score=155.70 Aligned_cols=242 Identities=15% Similarity=0.165 Sum_probs=175.6
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC---------CCceeecccccCCccee--eCCCCCEEEEEECCC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS---------VPPLLDFETKLKDGSQS--HSKVKNLFITGHSDG 253 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~---------~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DG 253 (826)
+++..|.+.|+.+.|.+..+.+++++ |+++.+|+.+ ..++.+| .+|.|.|.| ..++++.+.+|+.||
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCCceEEEeeccCc
Confidence 46788999999999999999999999 9999999651 2355566 789999999 899999999999999
Q ss_pred cEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC--cc----ccceEEE
Q 003360 254 AINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH--AI----ENSFLSF 326 (826)
Q Consensus 254 tVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~--~~----~~~~~~i 326 (826)
+||.|++. .....-.++.. .-...+.+|...|+.+++++....|++++.||+|++|+...... .. .....++
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~-vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPS-VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeeccCCCCCcccccCcc-hhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceE
Confidence 99999763 11100001000 00223568999999999999999999999999999999875422 00 0001111
Q ss_pred eecCCCCeEE----------------EEEEEEeec--------cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE
Q 003360 327 TGSKKGNSHI----------------IHSVKVMKI--------NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 327 ~~s~~~~~~~----------------~~~~~~~~~--------~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
.+......+. ...+++... ...+.-+.++|.+.+..++-+|+.|+++|..++.+++
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 1110000000 000111111 2347778889999999999999999999999999996
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
... .|...++++++.+ ++.+|++++.|+.|++|.+....++.....|
T Consensus 526 s~~---a~~~svtslai~~------ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 526 SMV---AHKDSVTSLAIDP------NGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred hee---eccceecceeecC------CCceEEeecCCceeehhhccchheeeccccc
Confidence 654 6788999999999 4999999999999999999866666544333
No 150
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.5e-15 Score=165.13 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=153.7
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCC-CC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS-CP 263 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s-~~ 263 (826)
+..|+++|.++.|++....+++|. +++|++|+...........+|...+.+ |+|.+.+.+.|+.|+-+++||.. .+
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G 145 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG 145 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence 689999999999999999999998 999999987654433333788888877 99999999999999999999994 33
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
. .+. +..|...|.++.|+|+|+++++|+.|.+|+|||...+... -.+.
T Consensus 146 c---~~~--------~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~---------------------~ef~ 193 (825)
T KOG0267|consen 146 C---SHT--------YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS---------------------KEFK 193 (825)
T ss_pred c---eee--------ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc---------------------cccc
Confidence 3 111 2457788999999999999999999999999999855431 1223
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
.|.+.|.++.|+|..-+++.|+.|++|++||+++..++-... .....|.++.|.+ ++..+.+|-.+
T Consensus 194 ~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~---~~~~~v~~~~fn~------~~~~~~~G~q~ 259 (825)
T KOG0267|consen 194 SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK---PETDGVRSLAFNP------DGKIVLSGEQI 259 (825)
T ss_pred cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC---CccCCceeeeecC------CceeeecCchh
Confidence 367889999999999999999999999999999888873332 3367899999999 46666655443
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.2e-13 Score=135.70 Aligned_cols=195 Identities=14% Similarity=0.252 Sum_probs=133.2
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
|++.|.+||+|..||.|-|||+.+... ...+..|-.+|++++|+++|+.|+++|.|..|.+||+..+..
T Consensus 31 Fs~~G~~lAvGc~nG~vvI~D~~T~~i----------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~- 99 (405)
T KOG1273|consen 31 FSRWGDYLAVGCANGRVVIYDFDTFRI----------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP- 99 (405)
T ss_pred eccCcceeeeeccCCcEEEEEccccch----------hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-
Confidence 999999999999999999999943331 223457888999999999999999999999999999995543
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE-EecCCeEEEEecCCCeeEE-eeecccCCCCCeeE
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV-GSDQGYVYLLDTEGPTVLY-QKHIASDISSGIVS 396 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las-Gs~dG~V~vwD~~~~~~l~-~~~~~~~~~~~V~s 396 (826)
++.....++|+...|+|.....++ .-.+..-.+.++..+.-.+ ........+..-.+
T Consensus 100 ---------------------l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~ 158 (405)
T KOG1273|consen 100 ---------------------LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASH 158 (405)
T ss_pred ---------------------eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccc
Confidence 444555889999999985443332 2233345566665443221 11100111111122
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCC
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKE 476 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (826)
..|.. .|.++++|+.-|.+.++|..|-+++.++........ -.+.+
T Consensus 159 ~~fdr------~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~I--K~I~~-------------------------- 204 (405)
T KOG1273|consen 159 GVFDR------RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAI--KQIIV-------------------------- 204 (405)
T ss_pred ccccC------CCCEEEEecCcceEEEEecchheeeeeeeechheee--eEEEE--------------------------
Confidence 23555 399999999999999999999999988754331111 11111
Q ss_pred CCCCCCCEEEEeecCcEEEEeccc
Q 003360 477 NAVPKQWFVLLCSEKAACAYSLSH 500 (826)
Q Consensus 477 ~~~~~~~~vv~~se~~irv~sl~~ 500 (826)
......+++-|+|+.||.|++..
T Consensus 205 -s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 205 -SRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred -eccCcEEEEecCCceEEEEehhh
Confidence 11123577889999999999874
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.56 E-value=3.9e-13 Score=141.36 Aligned_cols=205 Identities=17% Similarity=0.152 Sum_probs=151.2
Q ss_pred ecccCCCEEEEEEeeCCC-eEEE-ec-CCcEEEeccCC-----CceeecccccCCccee--eCCCC-CEEEEEECCCcEE
Q 003360 188 MPFLDSSITAMKLITGNS-FILS-SA-DEDYSLLAKSV-----PPLLDFETKLKDGSQS--HSKVK-NLFITGHSDGAIN 256 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~-~l~~-~~-d~~i~~w~~~~-----~~~~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVr 256 (826)
...+...|++++|+|... .+++ |. .|.|-+|+-+. ..+.- ..+|.+.|.+ |+|.. ..+++.+.||+||
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~-f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL-FTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE-eccCCccccceEecCCChhheeeeccCceee
Confidence 356788999999999876 5555 44 78999997642 12233 3789999999 77754 5888999999999
Q ss_pred EEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 257 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
+=|+.+.....++.+. .....+..+.|+.+.+.++.|..=|...+||++++....
T Consensus 261 ~~D~~~~i~e~v~s~~--------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~----------------- 315 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLD--------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY----------------- 315 (498)
T ss_pred eeeecchhhHHHhhcC--------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccc-----------------
Confidence 9999666533333332 123567888899999999999888899999999654311
Q ss_pred EEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeEEe-eecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 337 IHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVLYQ-KHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l~~-~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
.....|...|++|+++|.. .++|+++-|++++|||+++-.--.. +-..-.|..+|.+..|+|. +..|++
T Consensus 316 ---~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs------~gtl~T 386 (498)
T KOG4328|consen 316 ---ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS------GGTLLT 386 (498)
T ss_pred ---hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC------CCceEe
Confidence 2223345689999999965 4689999999999999986321110 0011268889999999995 555999
Q ss_pred EECCCcEEEEECC
Q 003360 415 ATKDSSVLVLDSD 427 (826)
Q Consensus 415 gs~Dg~V~iwd~~ 427 (826)
-+.|..|+|||..
T Consensus 387 T~~D~~IRv~dss 399 (498)
T KOG4328|consen 387 TCQDNEIRVFDSS 399 (498)
T ss_pred eccCCceEEeecc
Confidence 9999999999974
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=1.9e-13 Score=143.27 Aligned_cols=200 Identities=18% Similarity=0.228 Sum_probs=140.8
Q ss_pred CCCEEEEEECCCcEEEEeCC-CCceeeeeecc----------cccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEE
Q 003360 242 VKNLFITGHSDGAINFWDVS-CPLFLLILSLK----------QQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRI 309 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~----------~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~i 309 (826)
-|+++|.|+.|..|.|||+. -....|...|. .........|..+|-.|+|+..- ..|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 46899999999999999982 11111222222 01111234688899999998864 68999999999999
Q ss_pred EEeCCCCCccccceEEEeecCCCCeEEEEEEEEee-ccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 310 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-INGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 310 wd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
||+.++++ .+... |.+.|.++.|+| ....|++|+.||+|++.|.|.+...- ..
T Consensus 271 WD~~~g~p----------------------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---~~ 325 (463)
T KOG0270|consen 271 WDVDTGKP----------------------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---KE 325 (463)
T ss_pred EEcCCCCc----------------------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC---ce
Confidence 99997655 33333 567899999988 46789999999999999999644331 11
Q ss_pred cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC-ceEEeeeccCCCCCcceEEEEecCCCCcccCcccccc
Q 003360 388 SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG-NMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNV 466 (826)
Q Consensus 388 ~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg-~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~ 466 (826)
-...+.|-.+.|.+. ....+++++.||+|+-+|.++. +++.++..|... ...++....
T Consensus 326 wk~~g~VEkv~w~~~-----se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~-ISgl~~n~~--------------- 384 (463)
T KOG0270|consen 326 WKFDGEVEKVAWDPH-----SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE-ISGLSVNIQ--------------- 384 (463)
T ss_pred EEeccceEEEEecCC-----CceeEEEecCCceEEeeecCCCCCceeEEEeccCC-cceEEecCC---------------
Confidence 134457889999986 4677888999999999999864 777776555542 222221111
Q ss_pred ccccCCCCCCCCCCCCCEEEEeecCcEEEEeccc
Q 003360 467 AGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSH 500 (826)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~ 500 (826)
..+.++..++++.+++|++..
T Consensus 385 -------------~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 385 -------------TPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred -------------CCcceeeccccceEEEEeecC
Confidence 112355666788999999973
No 154
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.54 E-value=9e-13 Score=133.00 Aligned_cols=183 Identities=13% Similarity=0.177 Sum_probs=126.3
Q ss_pred EEEEEEeeCCCeEEEecCCcEEEeccCCC-c----eeec---ccccCCccee--eCCCCC-EEEEEECCCcEEEEeCCCC
Q 003360 195 ITAMKLITGNSFILSSADEDYSLLAKSVP-P----LLDF---ETKLKDGSQS--HSKVKN-LFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~-~----~~~~---~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD~s~~ 263 (826)
-.+++|+|||..|++|-...|++++...+ . ..++ +.+..|-+.+ |+|... .++.|+.-.++-|+.-.+.
T Consensus 161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 35789999999999998999999975321 1 1111 2233455555 888554 8999999999988887444
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.. ++.+ -+|++.|+.+.|+++|..|.+|+. |..|..||++..... + ..+
T Consensus 241 ~p--l~ll--------ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p----v----------------~~L 290 (406)
T KOG2919|consen 241 RP--LQLL--------GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP----V----------------YAL 290 (406)
T ss_pred Cc--eeee--------cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch----h----------------hhh
Confidence 42 2223 368899999999999999999987 678999999844221 0 111
Q ss_pred eeccC-C--eEEEEEccCCCEEEEEecCCeEEEEecCC-CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 343 MKING-S--IISLNMNRNSQHLAVGSDQGYVYLLDTEG-PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 343 ~~~~~-~--V~~l~~s~~g~~lasGs~dG~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
..|.+ . =.-....|.+++||+|+.||.|++||+.+ +..+... ..++..|..+++.|. =+++++++
T Consensus 291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~---~~~sd~vNgvslnP~------mpilatss 359 (406)
T KOG2919|consen 291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT---GNYSDTVNGVSLNPI------MPILATSS 359 (406)
T ss_pred hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc---ccccccccceecCcc------cceeeecc
Confidence 11211 1 11234578999999999999999999988 4423222 356778888999984 45555554
No 155
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2e-12 Score=129.91 Aligned_cols=177 Identities=19% Similarity=0.230 Sum_probs=116.8
Q ss_pred eeecccCCCEEEEEEeeC--CCeEEEec-CCcEEEeccCCCceeecccc--------------cCCccee--eCCC---C
Q 003360 186 LKMPFLDSSITAMKLITG--NSFILSSA-DEDYSLLAKSVPPLLDFETK--------------LKDGSQS--HSKV---K 243 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~--~~~l~~~~-d~~i~~w~~~~~~~~~~~~~--------------h~g~V~~--~s~~---~ 243 (826)
-++....+.|+.++|.|. |-.+++++ ||++|+|..-.+.-+.. |. +.....| |++. .
T Consensus 106 ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~-W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~ 184 (361)
T KOG2445|consen 106 TTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ-WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHE 184 (361)
T ss_pred EEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc-chhhhhhhhccCCcccccCcceEEeeccccccC
Confidence 345666789999999985 55566777 99999995432211111 22 2223333 5543 3
Q ss_pred CEEEEEECC-----CcEEEEeCC--CCceeeeeecccccccccccCCCCeEEEEEeCCC----CEEEEEeCCCcEEEEEe
Q 003360 244 NLFITGHSD-----GAINFWDVS--CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS----RVLVSGDQSGMVRIFKL 312 (826)
Q Consensus 244 ~~l~Tgs~D-----GtVriWD~s--~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~----~~Lasgs~dg~V~iwd~ 312 (826)
.+||.|+.+ +.++||... ++.... ...+..|..+|+.|+|.|.- .+||+++.|| |+||++
T Consensus 185 p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k--------va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 185 PLIAVGSDEDAPHLNKVKIYEYNENGRKWLK--------VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred ceEEEEcccCCccccceEEEEecCCcceeee--------ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 588888877 689999982 223212 33445788999999999974 5799999999 999999
Q ss_pred CCCCCcc-ccceEEEeecCCCCeEEEEEEE-EeeccCCeEEEEEccCCCEEEEEecCCeEEEEec
Q 003360 313 KYEPHAI-ENSFLSFTGSKKGNSHIIHSVK-VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 313 ~~~~~~~-~~~~~~i~~s~~~~~~~~~~~~-~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~ 375 (826)
+.-.... +..+. .+..-..+.++.+. +..|++.|..+.|+-.|..|++.+.||.||+|..
T Consensus 256 ~~~~s~i~~ee~~---~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 256 KVARSAIEEEEVL---APDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeccchhhhhccc---CCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 8431100 00000 00000112222233 5678899999999999999999999999999975
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=7.8e-14 Score=161.45 Aligned_cols=231 Identities=13% Similarity=0.210 Sum_probs=163.6
Q ss_pred eccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC-eEEEec-CCcEEEeccCCCceeec
Q 003360 151 LGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS-FILSSA-DEDYSLLAKSVPPLLDF 228 (826)
Q Consensus 151 ~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~-~l~~~~-d~~i~~w~~~~~~~~~~ 228 (826)
++.+|.|.+||...+. ... ......+..-|.++|..+.|++... .+++|+ ++.|.+|+.... -..+
T Consensus 86 G~edG~I~ly~p~~~~----~~~-------~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~-~tP~ 153 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASII----ANA-------SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP-ETPF 153 (1049)
T ss_pred cccCCceEEecchhhc----cCc-------chHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCc-CCCC
Confidence 3456788888877740 111 1223334578999999999999888 666666 899999976542 1122
Q ss_pred ---ccccCCccee--eC-CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEE
Q 003360 229 ---ETKLKDGSQS--HS-KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSG 301 (826)
Q Consensus 229 ---~~~h~g~V~~--~s-~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasg 301 (826)
.......|.+ |. ....+|++|+.+|.+-|||+.... ++..+... .....+..|+|+|+. ..++++
T Consensus 154 ~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~--pii~ls~~------~~~~~~S~l~WhP~~aTql~~A 225 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK--PIIKLSDT------PGRMHCSVLAWHPDHATQLLVA 225 (1049)
T ss_pred CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC--cccccccC------CCccceeeeeeCCCCceeeeee
Confidence 1224455666 43 345699999999999999995543 22222211 111468899999985 456666
Q ss_pred eCCC---cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE-eeccCCeEEEEEccCC-CEEEEEecCCeEEEEecC
Q 003360 302 DQSG---MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV-MKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 302 s~dg---~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~-~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~ 376 (826)
+.|. .|.+||+|.-.. . ++. ..|...|.+|.|++.+ .+|+++..|+.|.+|+..
T Consensus 226 s~dd~~PviqlWDlR~ass----------------P-----~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 226 SGDDSAPVIQLWDLRFASS----------------P-----LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred cCCCCCceeEeecccccCC----------------c-----hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 5554 699999984322 1 222 2567779999999976 889999999999999999
Q ss_pred CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 377 GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 377 ~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
+++++..+. ....++..+.|.|. +...+++++-||.|.|+.+.++.
T Consensus 285 tgEvl~~~p---~~~nW~fdv~w~pr-----~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 285 TGEVLGELP---AQGNWCFDVQWCPR-----NPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CceEeeecC---CCCcceeeeeecCC-----CcchhhhheeccceeeeeeecCC
Confidence 999996654 35678889999996 46688899999999999998554
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=6.7e-14 Score=161.97 Aligned_cols=209 Identities=19% Similarity=0.249 Sum_probs=152.6
Q ss_pred CEEEEEEeeCCCe----EEEec-CCcEEEeccCC------CceeecccccCCccee--eCCCCC-EEEEEECCCcEEEEe
Q 003360 194 SITAMKLITGNSF----ILSSA-DEDYSLLAKSV------PPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWD 259 (826)
Q Consensus 194 ~Vt~~~fs~~~~~----l~~~~-d~~i~~w~~~~------~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD 259 (826)
.-..++|.+.+.. ++.|. ||.|.+|+... ..+......|+|.|.. |.+... +||+|..||.|.|||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 4467788887776 55555 99999995432 1122224679999999 888655 999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
+..... + +.... ..-...|.+|+|+.. ...||+++.+|.+.|||++..+.. . .
T Consensus 146 lnn~~t-P-~~~~~------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi-----i-----------~-- 199 (1049)
T KOG0307|consen 146 LNKPET-P-FTPGS------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI-----I-----------K-- 199 (1049)
T ss_pred cCCcCC-C-CCCCC------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc-----c-----------c--
Confidence 944331 1 11110 112368999999875 578999999999999999965321 0 0
Q ss_pred EEEEeeccCCeEEEEEccCC-CEEEEEecC---CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 339 SVKVMKINGSIISLNMNRNS-QHLAVGSDQ---GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~~g-~~lasGs~d---G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
+........+..|+|+|+. ..|+++++| -.|.+||+|....- .+...+|...|.++.|++. |..+|++
T Consensus 200 -ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP--~k~~~~H~~GilslsWc~~-----D~~lllS 271 (1049)
T KOG0307|consen 200 -LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP--LKILEGHQRGILSLSWCPQ-----DPRLLLS 271 (1049)
T ss_pred -cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc--hhhhcccccceeeeccCCC-----Cchhhhc
Confidence 1111223458899999976 456666665 35899999877654 3444689999999999996 6799999
Q ss_pred EECCCcEEEEECCCCceEEeee
Q 003360 415 ATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 415 gs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
++.|+.|.+|+.+||+.+..+.
T Consensus 272 sgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 272 SGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred ccCCCCeeEecCCCceEeeecC
Confidence 9999999999999999998863
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.52 E-value=9.2e-13 Score=133.34 Aligned_cols=316 Identities=15% Similarity=0.114 Sum_probs=199.1
Q ss_pred CcCCeEEEEEee-eCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecC--CCceeeEEEecCCCCCCCCCCce
Q 003360 71 DKIPISSLKWVY-ADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPL--SEPCIDMEIISSSSDPNKPKQDS 147 (826)
Q Consensus 71 ~~~pI~~l~W~~-~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~--~~~~~d~~~l~~~~~~~~~~~~~ 147 (826)
+..||..+++.. ..-....++..-|. +.+++...+.....+.+...... ++.+--..+... ....++.
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-----~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd----~~~~~p~ 107 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGG-----NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYD----SNTGNPF 107 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCC-----cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEec----CCCCCee
Confidence 456777777654 22222344443333 24566666666655555433322 222222222211 1225678
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCe-EEEec-CCcEEEeccCCCc-
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF-ILSSA-DEDYSLLAKSVPP- 224 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~~~~- 224 (826)
+++++..|.|+++|...- +..-.+.+|...|+.++|.|+.+. +++++ |..||+|+.+...
T Consensus 108 la~~G~~GvIrVid~~~~-----------------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C 170 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSG-----------------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC 170 (385)
T ss_pred EEeecceeEEEEEecchh-----------------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE
Confidence 888889999999998761 122335789999999999998755 55577 9999999766533
Q ss_pred eeec--ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceee--eeecc----------------cccccccccC
Q 003360 225 LLDF--ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLL--ILSLK----------------QQSEKDFSLS 282 (826)
Q Consensus 225 ~~~~--~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~--i~~l~----------------~~~~~~~~~h 282 (826)
+..+ ..+|.+.|.+ |+.++.+|++++.|.++++|++..+...- -.... ...-..-..|
T Consensus 171 v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 2222 5679999999 99999999999999999999985332100 00000 0000023567
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEE--ccCCCE
Q 003360 283 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNM--NRNSQH 360 (826)
Q Consensus 283 ~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~--s~~g~~ 360 (826)
...|-|+.|-- .++++=+-++.|..|....-. +.++.+..+ +....++ ..+.-....|.-|.| .+-++.
T Consensus 251 rnyVDCvrw~g--d~ilSkscenaI~~w~pgkl~----e~~~~vkp~-es~~Ti~--~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 251 RNYVDCVRWFG--DFILSKSCENAIVCWKPGKLE----ESIHNVKPP-ESATTIL--GEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred cchHHHHHHHh--hheeecccCceEEEEecchhh----hhhhccCCC-ccceeee--eEeccCccceEEEEEeecHHHHH
Confidence 78888888864 688888888999999984211 112211111 1111111 111112334555544 566889
Q ss_pred EEEEecCCeEEEEecCCCeeE-EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 361 LAVGSDQGYVYLLDTEGPTVL-YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 361 lasGs~dG~V~vwD~~~~~~l-~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
||.|.+.|.|.+||++..... .+....+.....|...+|+. |+.+|+....|++|.-||..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~------dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR------DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc------cCcEEEEEeCCCcEEEEEee
Confidence 999999999999999876542 11222234566788899998 69999999999999999854
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.51 E-value=1.2e-12 Score=138.50 Aligned_cols=233 Identities=16% Similarity=0.186 Sum_probs=159.9
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEE--ecCCcEEEeccCCC--
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS--SADEDYSLLAKSVP-- 223 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~--~~d~~i~~w~~~~~-- 223 (826)
+.+.+....+.+||...++.. +...+ ....+.+..++|.......+. ++|..+++|.+..+
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~------------~~~~~---~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~ 69 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETK------------SEYVH---QTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP 69 (673)
T ss_pred eeeeccCCceEEeecccccCc------------ccccc---CCCCCcceeeeccccceEEEeecCCceeEEEecccCCCC
Confidence 345556667888987774210 01111 122344778888776653333 22889999965543
Q ss_pred ceeecccccCC-ccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE
Q 003360 224 PLLDFETKLKD-GSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300 (826)
Q Consensus 224 ~~~~~~~~h~g-~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las 300 (826)
.+... ....| .-.| ......++++|+..|+|+|||+..+.. ... ...|...|++|.+.....++|+
T Consensus 70 ~Vp~~-~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~--hr~--------lkdh~stvt~v~YN~~DeyiAs 138 (673)
T KOG4378|consen 70 EVPRV-RKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI--HRF--------LKDHQSTVTYVDYNNTDEYIAS 138 (673)
T ss_pred cccee-eccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH--hhh--------ccCCcceeEEEEecCCcceeEE
Confidence 11111 11111 1223 333447999999999999999964431 111 2468899999999999999999
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec-cCCeEEEEEccCCCE-EEEEecCCeEEEEecCCC
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-NGSIISLNMNRNSQH-LAVGSDQGYVYLLDTEGP 378 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-~~~V~~l~~s~~g~~-lasGs~dG~V~vwD~~~~ 378 (826)
++..|.|.|..+.++.... .+... ...|.-|.|++..++ |.+++++|.|.+||+.+.
T Consensus 139 vs~gGdiiih~~~t~~~tt---------------------~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~ 197 (673)
T KOG4378|consen 139 VSDGGDIIIHGTKTKQKTT---------------------TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM 197 (673)
T ss_pred eccCCcEEEEecccCcccc---------------------ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC
Confidence 9999999999998664421 01111 233678999997765 567899999999999988
Q ss_pred eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 379 TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 379 ~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
..+ +.+...|..|-..|+|+|. +..+|++.+.|..|.+||....+....
T Consensus 198 sp~--~~~~~~HsAP~~gicfsps-----ne~l~vsVG~Dkki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 198 SPI--FHASEAHSAPCRGICFSPS-----NEALLVSVGYDKKINIYDIRSQASTDR 246 (673)
T ss_pred Ccc--cchhhhccCCcCcceecCC-----ccceEEEecccceEEEeecccccccce
Confidence 888 4555789999999999996 567888999999999999985554433
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.51 E-value=1.1e-12 Score=142.95 Aligned_cols=270 Identities=11% Similarity=0.116 Sum_probs=171.5
Q ss_pred cCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecc
Q 003360 111 EQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPF 190 (826)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (826)
+..+.++++..+.....+.|+.++| .+..++..+.+..+.+||..+-. .- + ....-+
T Consensus 86 fr~ee~~lk~~~aH~nAifDl~wap--------ge~~lVsasGDsT~r~Wdvk~s~-----l~-G---------~~~~~G 142 (720)
T KOG0321|consen 86 FRLEERQLKKPLAHKNAIFDLKWAP--------GESLLVSASGDSTIRPWDVKTSR-----LV-G---------GRLNLG 142 (720)
T ss_pred cchhhhhhcccccccceeEeeccCC--------CceeEEEccCCceeeeeeeccce-----ee-c---------ceeecc
Confidence 3334444444444445566666554 23455666667788999987610 00 0 012468
Q ss_pred cCCCEEEEEEeeCCCeEEE-ec-CCcEEEeccCCCc---------------------eeec-----cc-ccCCc----ce
Q 003360 191 LDSSITAMKLITGNSFILS-SA-DEDYSLLAKSVPP---------------------LLDF-----ET-KLKDG----SQ 237 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~-~~-d~~i~~w~~~~~~---------------------~~~~-----~~-~h~g~----V~ 237 (826)
|...|..++|.+..+.++. |+ |+.+.+|+..... .... .| .+.+. |+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence 9999999999998876655 66 9999999532211 0000 00 12222 33
Q ss_pred e-eCCCCCEEEEEEC-CCcEEEEeCCCCceeeeeecccccccccccC---CCCeEEEEEeCCCCEEEEEeCCCcEEEEEe
Q 003360 238 S-HSKVKNLFITGHS-DGAINFWDVSCPLFLLILSLKQQSEKDFSLS---GIPLTALYYDGTSRVLVSGDQSGMVRIFKL 312 (826)
Q Consensus 238 ~-~s~~~~~l~Tgs~-DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h---~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~ 312 (826)
. +..|...||+++. |+.|||||+..... .+.........+..| ...++++.....|.+|.+.+.|+.|.+|++
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~--~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm 300 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYT--AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNM 300 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeeccccc--ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEec
Confidence 3 6788899999988 99999999944331 111221112222233 256788888887777777777999999999
Q ss_pred CCCCCccccceEEEeecCCCCeEEEEEEEEeeccCC-eEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCC
Q 003360 313 KYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGS-IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS 391 (826)
Q Consensus 313 ~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~-V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~ 391 (826)
....... .+ ...+..... -..-..+|++.++++|+.|+.+++|.+.....- .....+|.
T Consensus 301 ~s~s~sP-----------~~-------~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~--~~~l~Ght 360 (720)
T KOG0321|consen 301 RSLSISP-----------VA-------EFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP--PALLLGHT 360 (720)
T ss_pred cccCcCc-----------hh-------hccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC--hhhhhCcc
Confidence 8543210 00 000001111 122246899999999999999999999887654 33345888
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
-.|++++|.|. +-.-+++++.|.++++|++.+|-
T Consensus 361 ~eVt~V~w~pS-----~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 361 REVTTVRWLPS-----ATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eEEEEEeeccc-----cCCCceeeccCcceEEEeccCch
Confidence 99999999996 33447788999999999997653
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.51 E-value=1e-12 Score=132.97 Aligned_cols=222 Identities=10% Similarity=0.090 Sum_probs=148.9
Q ss_pred cCCCEEEEEEeeC----CCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCC
Q 003360 191 LDSSITAMKLITG----NSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 191 h~~~Vt~~~fs~~----~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~ 262 (826)
|+.....++++-+ .+++++++ -|.|++.+...........+|.+.|.. ++|+. +++++|+.|.+||+|++..
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 5555555556443 56777777 899999976655555555789999988 88865 6999999999999999965
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE-----
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII----- 337 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~----- 337 (826)
... +..+. .+++|.+.|.++.|++++..+++++.|..+++|++...+..+.. -..+.+++++....+
T Consensus 168 ~~C--v~VfG-----G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~l-E~s~~~~~~~t~~pfpt~~~ 239 (385)
T KOG1034|consen 168 DVC--VAVFG-----GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKL-ELSITYSPNKTTRPFPTPKT 239 (385)
T ss_pred CeE--EEEec-----ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhh-hhhcccCCCCccCcCCcccc
Confidence 552 23333 34789999999999999999999999999999999854221100 011223332221000
Q ss_pred --EEE-EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC-Ce-------------eEEeeecccCCCCCeeEEEEe
Q 003360 338 --HSV-KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG-PT-------------VLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 338 --~~~-~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~-~~-------------~l~~~~~~~~~~~~V~sl~f~ 400 (826)
... ....|...|.|+.|- |.++++=+.++.|..|-..+ .. ++..+. -....|+-+.|.
T Consensus 240 ~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~---~~~c~iWfirf~ 314 (385)
T KOG1034|consen 240 HFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD---YPMCDIWFIRFA 314 (385)
T ss_pred ccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec---cCccceEEEEEe
Confidence 001 223356678888886 46899988899999998721 11 111111 112234445443
Q ss_pred --ecccCCCCCcEEEEEECCCcEEEEECCCCce
Q 003360 401 --TCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 401 --~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
+. ...|+.|...|.|++||+++...
T Consensus 315 ~d~~------~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 315 FDPW------QKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred ecHH------HHHHhhccCCCcEEEEECCCCCC
Confidence 33 77899999999999999997654
No 162
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.50 E-value=1e-12 Score=135.74 Aligned_cols=209 Identities=13% Similarity=0.196 Sum_probs=145.9
Q ss_pred cccccCCccee--eCCC-CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeC
Q 003360 228 FETKLKDGSQS--HSKV-KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQ 303 (826)
Q Consensus 228 ~~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~ 303 (826)
+..+|++.|.. |+|. .+.||+|+.|.+|.||++-.+.+ ...+. +.+..+.+|...|-.|+|+|.- ..|++++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l--~~~lt-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL--TRDLT-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccc--ccCcc-cceEEEeecceeEEEEeecccchhhHhhccC
Confidence 34789999988 8874 56899999999999999932221 11121 2244567899999999999975 68999999
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEe
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
|.+|.+|++.++.. +....|..-|.+++|+.+|.++++.+.|..|||||.+.++++..
T Consensus 153 Dn~v~iWnv~tgea----------------------li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEA----------------------LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred CceEEEEeccCCce----------------------eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee
Confidence 99999999996644 33445888899999999999999999999999999999999965
Q ss_pred eecccCCC-CCeeEEEEeecccCCCCCcEEEEEE---CCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCccc
Q 003360 384 KHIASDIS-SGIVSLQFETCSLQGFEKNFLVIAT---KDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLAR 459 (826)
Q Consensus 384 ~~~~~~~~-~~V~sl~f~~~~~~~~d~~~l~sgs---~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~ 459 (826)
.. .|. ..-....|.- ++.++-+|- ++..+-+||..+-+ ..+.++.+|..+|.
T Consensus 211 ~~---~heG~k~~Raifl~------~g~i~tTGfsr~seRq~aLwdp~nl~-------------eP~~~~elDtSnGv-- 266 (472)
T KOG0303|consen 211 GV---AHEGAKPARAIFLA------SGKIFTTGFSRMSERQIALWDPNNLE-------------EPIALQELDTSNGV-- 266 (472)
T ss_pred cc---cccCCCcceeEEec------cCceeeeccccccccceeccCccccc-------------CcceeEEeccCCce--
Confidence 53 232 2233444554 366444442 46688999977421 11334444432222
Q ss_pred CccccccccccCCCCCCCCCCCCCEEEEe--ecCcEEEEecc
Q 003360 460 GANLSNVAGMNKGSPKENAVPKQWFVLLC--SEKAACAYSLS 499 (826)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~--se~~irv~sl~ 499 (826)
-...+.++..+|.+| +|..||.|-+.
T Consensus 267 --------------l~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 267 --------------LLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred --------------EEeeecCCCCEEEEEecCCcceEEEEec
Confidence 112334454555555 56689999886
No 163
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.50 E-value=3.8e-12 Score=147.61 Aligned_cols=288 Identities=13% Similarity=0.166 Sum_probs=166.9
Q ss_pred CCccccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEe
Q 003360 2 GGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWV 81 (826)
Q Consensus 2 ~~~~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~ 81 (826)
-|.+..++|+|...+..+|-.++++++|++|+.||+|++||.+.-.... -..+-.+.+.....++.++.-|
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---------~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---------GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---------ceeeeeEEEeccCCceEEEEec
Confidence 3778899999999999999988889999999999999999988741111 1112222333334456666555
Q ss_pred eeCCCCceEEEEccCCcCccceeEEEEcccCCcc-----eeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCcc
Q 003360 82 YADGKASRLYIMGASDFVSMNLLQIVLLNEQTES-----RTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGH 156 (826)
Q Consensus 82 ~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~-----~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~ 156 (826)
. .+.-|..++. +..+.++.++..... ...+..+...+.+++|..-. .......++.++..+.
T Consensus 1108 ~----~~~~~Av~t~----DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~-----~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1108 G----NGDQFAVSTK----DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFT-----AIVQSHVLVYATDLSR 1174 (1431)
T ss_pred c----CCCeEEEEcC----CCeEEEEEccccccccceeeeeecccccCCCceEEeeccc-----ccccceeEEEEEeccc
Confidence 4 2333444433 234566666552211 11133445566667664221 1122246778888888
Q ss_pred EEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCcc
Q 003360 157 FYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGS 236 (826)
Q Consensus 157 l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V 236 (826)
++.||......... ...+..++.||.++
T Consensus 1175 iv~~D~r~~~~~w~---------------lk~~~~hG~vTSi~------------------------------------- 1202 (1431)
T KOG1240|consen 1175 IVSWDTRMRHDAWR---------------LKNQLRHGLVTSIV------------------------------------- 1202 (1431)
T ss_pred eEEecchhhhhHHh---------------hhcCccccceeEEE-------------------------------------
Confidence 88998877432110 00011122333332
Q ss_pred eeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCC---EEEEE-e-CCCcEEEEE
Q 003360 237 QSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR---VLVSG-D-QSGMVRIFK 311 (826)
Q Consensus 237 ~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~---~Lasg-s-~dg~V~iwd 311 (826)
.+|.++++++|+..|.+-+||+..+.. +.... ..+..+|+.|..||-.+ ..+++ + ..+.|.+|+
T Consensus 1203 --idp~~~WlviGts~G~l~lWDLRF~~~--i~sw~-------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1203 --IDPWCNWLVIGTSRGQLVLWDLRFRVP--ILSWE-------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred --ecCCceEEEEecCCceEEEEEeecCce--eeccc-------CcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 556667899999999999999977763 33333 23557888888887543 44444 4 467999999
Q ss_pred eCCCCCccccceEEEeecCCCCeEEEEEEEEe----eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 312 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM----KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 312 ~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~----~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
+.++.+.. +-+..++...--+.+... ++.-.....++..-+.++.+|+.|+.||.||...+..
T Consensus 1272 ~~~g~~~~------vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1272 METGLRQT------VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred cccCcceE------EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 99874410 111111111000000000 1111223334444455899999999999999876543
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.50 E-value=2.2e-12 Score=140.42 Aligned_cols=275 Identities=12% Similarity=0.160 Sum_probs=193.4
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
++-|.-+|+. |||++|+.+ .+..+.++|.++|....+ -+.|+.-|.+++|+. +|..|.
T Consensus 12 ~hci~d~afk-PDGsqL~lA-Ag~rlliyD~ndG~llqt----------------LKgHKDtVycVAys~----dGkrFA 69 (1081)
T KOG1538|consen 12 EHCINDIAFK-PDGTQLILA-AGSRLLVYDTSDGTLLQP----------------LKGHKDTVYCVAYAK----DGKRFA 69 (1081)
T ss_pred ccchheeEEC-CCCceEEEe-cCCEEEEEeCCCcccccc----------------cccccceEEEEEEcc----CCceec
Confidence 4588899995 899999988 677899999999833332 234667788998876 788888
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
+|+.|. .+++|+..-
T Consensus 70 SG~aDK---------------------------------------------------------~VI~W~~kl-------- 84 (1081)
T KOG1538|consen 70 SGSADK---------------------------------------------------------SVIIWTSKL-------- 84 (1081)
T ss_pred cCCCce---------------------------------------------------------eEEEecccc--------
Confidence 888754 111222111
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEE
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGH 250 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs 250 (826)
.... --.|...|.|+.|+|....+++++-..+-+|......... ......+.+ |..||++++-|+
T Consensus 85 --------EG~L---kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K--~kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 85 --------EGIL---KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK--HKSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred --------ccee---eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh--hhhheeEEEeeecCCCcEEEEec
Confidence 0000 1258889999999999999999885566788544322211 111222333 999999999999
Q ss_pred CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-----CEEEEEeCCCcEEEEEeCCCCCccccceEE
Q 003360 251 SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-----RVLVSGDQSGMVRIFKLKYEPHAIENSFLS 325 (826)
Q Consensus 251 ~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-----~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~ 325 (826)
.||||.|-+..+..... +.. --+...+|++++|+|.+ ..+++..+..++.+|.+.....
T Consensus 152 ~nGTIsiRNk~gEek~~---I~R-----pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I-------- 215 (1081)
T KOG1538|consen 152 FNGTISIRNKNGEEKVK---IER-----PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI-------- 215 (1081)
T ss_pred cCceEEeecCCCCcceE---EeC-----CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee--------
Confidence 99999999886555211 111 12345899999999975 4688888888888888763211
Q ss_pred EeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccC
Q 003360 326 FTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQ 405 (826)
Q Consensus 326 i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~ 405 (826)
-+.....-...|+.+.++|.++.+|+.|+.+.++-. .|-.+- .......+|++++..|
T Consensus 216 --------------gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLG---Tvg~~D~WIWtV~~~P---- 273 (1081)
T KOG1538|consen 216 --------------GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLG---TVGEQDSWIWTVQAKP---- 273 (1081)
T ss_pred --------------cccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEe---eccccceeEEEEEEcc----
Confidence 111122334678999999999999999999999865 343331 2234677999999999
Q ss_pred CCCCcEEEEEECCCcEEEEECC
Q 003360 406 GFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 406 ~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++++++.|..||+|-.|++-
T Consensus 274 --NsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 274 --NSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred --CCceEEEEEccCeeehhhhH
Confidence 59999999999999998875
No 165
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=7.3e-12 Score=126.07 Aligned_cols=197 Identities=13% Similarity=0.151 Sum_probs=144.5
Q ss_pred CEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeee
Q 003360 194 SITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILS 270 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~ 270 (826)
.-+|+.|++.|.+++.|. +|.+.+|+..+..+..+..+|...|.+ |+++|+.|+|++.|.+|.+||+..+. +++.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~r 102 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLKR 102 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--ceeE
Confidence 378999999999999999 999999986654455555789999999 99999999999999999999994444 2344
Q ss_pred cccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCCCCccccceEE-EeecCCCCeEEEEEEEEeeccCC
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLS-FTGSKKGNSHIIHSVKVMKINGS 348 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~-i~~s~~~~~~~~~~~~~~~~~~~ 348 (826)
++ -..+|+...|+|..+-.+++ -.+..-.+-++... .+. +..+.++. .+..
T Consensus 103 ir---------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~-------~h~~Lp~d~d~d-----------ln~s 155 (405)
T KOG1273|consen 103 IR---------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP-------KHSVLPKDDDGD-----------LNSS 155 (405)
T ss_pred EE---------ccCccceeeeccccCCeEEEEEecCCcEEEEecCC-------ceeeccCCCccc-----------cccc
Confidence 44 23699999999976544333 22333334444311 010 11111111 1222
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 349 IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 349 V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
..+..|.+.|+++.+|...|.+.|+|..+.+|+...++.. ...|.++.|+.. +.+|+.-+.|..|+.|+..
T Consensus 156 as~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits--~~~IK~I~~s~~------g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 156 ASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS--VQAIKQIIVSRK------GRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cccccccCCCCEEEEecCcceEEEEecchheeeeeeeech--heeeeEEEEecc------CcEEEEecCCceEEEEehh
Confidence 3444788999999999999999999999999996665422 357888889874 9999999999999999876
No 166
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=3.3e-12 Score=145.82 Aligned_cols=283 Identities=14% Similarity=0.193 Sum_probs=178.5
Q ss_pred eEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccC--CCCCCCC
Q 003360 104 LQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQS--RSPPSAP 181 (826)
Q Consensus 104 ~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~--~~~~~~~ 181 (826)
+.|+.++.......+...-+....+.++++| +..+...+++++.+|.+.+|++..... ..+. ..+..+.
T Consensus 1088 i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~li------Ne~D~aLlLtas~dGvIRIwk~y~~~~---~~~eLVTaw~~Ls 1158 (1387)
T KOG1517|consen 1088 IRVWDWEKGRLLNGFDNGAFPDTRVSDLELI------NEQDDALLLTASSDGVIRIWKDYADKW---KKPELVTAWSSLS 1158 (1387)
T ss_pred EEEEecccCceeccccCCCCCCCccceeeee------cccchhheeeeccCceEEEeccccccc---CCceeEEeecccc
Confidence 4444444433322222233455567788877 455667788999999999998765210 0000 0000000
Q ss_pred ccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce-eecccccCCccee---eCCCCCEEEEEECCCcEE
Q 003360 182 KEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL-LDFETKLKDGSQS---HSKVKNLFITGHSDGAIN 256 (826)
Q Consensus 182 ~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~-~~~~~~h~g~V~~---~s~~~~~l~Tgs~DGtVr 256 (826)
. .+++-.+.=..+.|.....+|++++ -..|++|+...... ..+..+-...|++ ....|++|++|..||+||
T Consensus 1159 ~----~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvR 1234 (1387)
T KOG1517|consen 1159 D----QLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVR 1234 (1387)
T ss_pred c----cCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceE
Confidence 0 1122222224566777777777777 67899998764332 2233333445555 445589999999999999
Q ss_pred EEeCCCCc-eeeeeecccccccccccCCCC--eEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCC
Q 003360 257 FWDVSCPL-FLLILSLKQQSEKDFSLSGIP--LTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKG 332 (826)
Q Consensus 257 iWD~s~~~-~~~i~~l~~~~~~~~~~h~~~--V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~ 332 (826)
+||..... ..++... ..|... |..+.+.+.| ..|++|+.+|.|.+||++...... +.
T Consensus 1235 vyD~R~a~~ds~v~~~--------R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~---~~-------- 1295 (1387)
T KOG1517|consen 1235 VYDRRMAPPDSLVCVY--------REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET---FL-------- 1295 (1387)
T ss_pred EeecccCCccccceee--------cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc---cc--------
Confidence 99983322 1122222 245544 9999999976 469999999999999999652211 00
Q ss_pred CeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE---EeeecccCCCCCeeEEEEeecccCCCCC
Q 003360 333 NSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL---YQKHIASDISSGIVSLQFETCSLQGFEK 409 (826)
Q Consensus 333 ~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l---~~~~~~~~~~~~V~sl~f~~~~~~~~d~ 409 (826)
. + .......+..++|..++....+|+|+. +.|+|||+.+..+- +.-.........+.+++|+|+ .
T Consensus 1296 -~-i---v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~------~ 1363 (1387)
T KOG1517|consen 1296 -T-I---VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPH------R 1363 (1387)
T ss_pred -e-e---eeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecch------h
Confidence 0 0 111111235899999999999999999 89999999654432 111112234567899999996 7
Q ss_pred cEEEEEECCCcEEEEECCCCc
Q 003360 410 NFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 410 ~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
-.+++|..|.+|.||....++
T Consensus 1364 ~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred HhhhhccCCceEEEeecCCcC
Confidence 788999999999999877543
No 167
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=5.4e-12 Score=132.24 Aligned_cols=199 Identities=16% Similarity=0.129 Sum_probs=144.0
Q ss_pred EEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecc
Q 003360 196 TAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK 272 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~ 272 (826)
.+++|+.+|..+++++ |+++|+|+...-...-.+..|.+.|.+ |+||+++|++-+.| ..+||+...... +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~--~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA--LARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch--hhhcC
Confidence 6899999999999998 999999983222222224779999999 99999999999999 999999933321 11111
Q ss_pred cccccccccCCCCeEEEEEeCCC-----CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC
Q 003360 273 QQSEKDFSLSGIPLTALYYDGTS-----RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING 347 (826)
Q Consensus 273 ~~~~~~~~~h~~~V~~l~fsp~~-----~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~ 347 (826)
. .........+.|+-+. +++++-..-+.|+.||+..... + .... ..+...-..
T Consensus 225 ~------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~-------------~-~~l~--~~~~~~~~~ 282 (398)
T KOG0771|consen 225 P------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG-------------S-NFLR--LRKKIKRFK 282 (398)
T ss_pred C------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc-------------c-cccc--hhhhhhccC
Confidence 0 0122345567777776 4455555667888888763211 1 0000 011112244
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 348 SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
.|++|+.+++|+++|.|+.||.|.|++....++++... ..|...|+.+.|+| |.+++.+.+.|....+..+.
T Consensus 283 siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~P------dsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFSP------DSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh--hhheeeeeeEEEcC------CcCcccccccCCceeEEEEe
Confidence 69999999999999999999999999999988885444 57888999999999 68999998888887776655
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.46 E-value=9.5e-12 Score=129.39 Aligned_cols=183 Identities=15% Similarity=0.113 Sum_probs=129.8
Q ss_pred Cccee--eCCCCC-EEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003360 234 DGSQS--HSKVKN-LFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRI 309 (826)
Q Consensus 234 g~V~~--~s~~~~-~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~i 309 (826)
..|.+ |+++.. .++||+.|..||||-+ ....-.-.-++++ ...+..|..+|+++.|+|++.+||+|+.+|.|.+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y--~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEY--LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEE--eecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 34444 666655 9999999999999988 2111000001222 1234578899999999999999999999999999
Q ss_pred EEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC
Q 003360 310 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD 389 (826)
Q Consensus 310 wd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~ 389 (826)
|............ .....+..-... .....|...|..++|+|++.++++|+.|.++++||+..+.++.. ..+
T Consensus 92 Wk~~~~~~~~~d~--e~~~~ke~w~v~---k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~---~~d 163 (434)
T KOG1009|consen 92 WKQGDVRIFDADT--EADLNKEKWVVK---KVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAI---LDD 163 (434)
T ss_pred EEecCcCCccccc--hhhhCccceEEE---EEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEee---ccc
Confidence 9987311100000 000001111111 34455778899999999999999999999999999999998843 358
Q ss_pred CCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 390 ISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 390 ~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
|...|..++|.|. ++++++-+.|...+.+.+..-+.+
T Consensus 164 h~~yvqgvawDpl------~qyv~s~s~dr~~~~~~~~~~~~~ 200 (434)
T KOG1009|consen 164 HEHYVQGVAWDPL------NQYVASKSSDRHPEGFSAKLKQVI 200 (434)
T ss_pred cccccceeecchh------hhhhhhhccCcccceeeeeeeeee
Confidence 8899999999996 899999999997777777644433
No 169
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=2.9e-10 Score=129.07 Aligned_cols=313 Identities=15% Similarity=0.143 Sum_probs=187.0
Q ss_pred ccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003360 231 KLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVR 308 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~ 308 (826)
.|+-.+.+ +||.++++|+|..||.|.+|.--+.. ........+..|...|++++|+++|.+|++|+..|.+.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~------~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv 276 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS------DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLV 276 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccc------cccccceEEEecccccceeEEecCCceEeecccceEEE
Confidence 36655666 99999999999999999999873311 00011223467889999999999999999999999999
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeec--
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI-- 386 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~-- 386 (826)
+|.+.++.. --+....++|..+.+|||+...+...+|..|.+....+.....+..-
T Consensus 277 ~Wq~~T~~k----------------------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~ 334 (792)
T KOG1963|consen 277 LWQLETGKK----------------------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIK 334 (792)
T ss_pred EEeecCCCc----------------------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCcc
Confidence 999986542 11223478899999999999999999999999998765443321110
Q ss_pred ------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC--CCc-ceEEEEecCCCCc
Q 003360 387 ------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK--PSR-ALFMQILNGQDGL 457 (826)
Q Consensus 387 ------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~--~~~-~lsi~~l~~~~~~ 457 (826)
..+..+-.+.++++|. .+.++-.+..|+|.+||+.+-+.+..+.+.... ++. -+.+.....
T Consensus 335 ~~~~~~k~~~~~l~t~~~idpr------~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav---- 404 (792)
T KOG1963|consen 335 PPTPSTKTRPQSLTTGVSIDPR------TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAV---- 404 (792)
T ss_pred CCCccccccccccceeEEEcCC------CCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeee----
Confidence 1112344566777773 667888899999999999988777554321111 111 111100000
Q ss_pred ccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeee-CCceEEEEE
Q 003360 458 ARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS-GSDVGLMLL 536 (826)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~-~~~~~lv~~ 536 (826)
.......-|+.. + ...+.+.....+..+|+|......+.- .-..++.....-|.-++.+.. ......+..
T Consensus 405 ~~~~~gs~maT~-E-------~~~d~~~~~~~e~~LKFW~~n~~~kt~-~L~T~I~~PH~~~~vat~~~~~~rs~~~vta 475 (792)
T KOG1963|consen 405 ARSRFGSWMATL-E-------ARIDKFNFFDGEVSLKFWQYNPNSKTF-ILNTKINNPHGNAFVATIFLNPTRSVRCVTA 475 (792)
T ss_pred hhhccceEEEEe-e-------eeehhhhccCceEEEEEEEEcCCccee-EEEEEEecCCCceeEEEEEecCcccceeEEe
Confidence 000000000000 0 000111112234567888765321111 111233322233444444444 444466777
Q ss_pred EeeceEEEeccCCcccccccccc----ce-eecCCCCCCCcccceeccCCCcEEEEcCCeeeee
Q 003360 537 FTSGKFEIRSLPELSLLKETSIR----GF-VYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFF 595 (826)
Q Consensus 537 ~~~G~I~i~slP~L~~l~~~sl~----~~-~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e~~~ 595 (826)
..+|.++||.+-+-+.+..-+-+ .+ .|. ..-....||+.||.++.+.-+.-|++
T Consensus 476 ~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~-----k~~i~a~~fs~dGslla~s~~~~Iti 534 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH-----KTPITALCFSQDGSLLAVSFDDTITI 534 (792)
T ss_pred ccCCeEEEEEEecccccCcCccceEEeeeeccc-----cCcccchhhcCCCcEEEEecCCEEEE
Confidence 78999999999776666543211 11 233 22234558888888777766666555
No 170
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.44 E-value=5.5e-12 Score=124.23 Aligned_cols=154 Identities=18% Similarity=0.248 Sum_probs=116.9
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeeccc--ccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcccc
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQ--QSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN 321 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~--~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~ 321 (826)
-++++|.++|.|-+||.+.... +..++. ..+.....|..+|.++.|.+....=++|+.+..+..|.+......
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~--~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs--- 240 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDK--IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS--- 240 (323)
T ss_pred EEEEEeccCCeEEEEEccCCce--eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc---
Confidence 3789999999999999955431 122221 112234567799999999988777788999999999998743110
Q ss_pred ceEEEeecCCCCeEEEEEEEEeec-cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVMKI-NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~~~-~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
-++ -.+... +-.|..+.+-||++.+|++++||.||||..++...+... .-|...|.+++|+
T Consensus 241 -----------lq~----~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL---kyHsagvn~vAfs 302 (323)
T KOG0322|consen 241 -----------LQI----RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL---KYHSAGVNAVAFS 302 (323)
T ss_pred -----------ccc----cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh---hhhhcceeEEEeC
Confidence 010 111111 334888999999999999999999999999999887433 4678899999999
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
| +.+.+++++.|++|.+|++
T Consensus 303 p------d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 P------DCELMAAASKDARISLWKL 322 (323)
T ss_pred C------CCchhhhccCCceEEeeec
Confidence 9 5799999999999999986
No 171
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.43 E-value=1.4e-11 Score=139.48 Aligned_cols=263 Identities=15% Similarity=0.152 Sum_probs=162.1
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
..+|+|++++.-++.++|.|+.+|.|++||++.+... |...+......++.|+..+.|....
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~----------~~s~ls~~~~sh~~~v~~vvW~~~~-------- 303 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT----------PPSGLSALEVSHSEPVTAVVWLQNE-------- 303 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC----------CCcccccccccCCcCeEEEEEeccC--------
Confidence 6799999998778999999999999999999886110 1112222344556677777664300
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
++ .-++.++.+|.|..|+...+..-....
T Consensus 304 --------------------------------------------------~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~ 332 (555)
T KOG1587|consen 304 --------------------------------------------------HN-TEFFSLSSDGSICSWDTDMLSLPVEGL 332 (555)
T ss_pred --------------------------------------------------CC-CceEEEecCCcEeeeeccccccchhhc
Confidence 11 224556667788777655432100000
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeCCCeE-EEec-CCcEEE-eccCC-Cce------eecccccCCccee--eC
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFI-LSSA-DEDYSL-LAKSV-PPL------LDFETKLKDGSQS--HS 240 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l-~~~~-d~~i~~-w~~~~-~~~------~~~~~~h~g~V~~--~s 240 (826)
+...... -.. -..-...+++++|.+..+.. +.|. .|.|.. -+.+. +.. ......|.|.|.+ ++
T Consensus 333 ~~~~~~~----~~~-~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~n 407 (555)
T KOG1587|consen 333 LLESKKH----KGQ-QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRN 407 (555)
T ss_pred ccccccc----ccc-ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecC
Confidence 0000000 000 01222468999998866554 4455 666544 33222 111 1112457888888 88
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
|.+..++..+.|.+||||.-.... .+++.+. .+...|++++|||.- ..|+++..||.+-+||+.......
T Consensus 408 PF~~k~fls~gDW~vriWs~~~~~-~Pl~~~~--------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 408 PFYPKNFLSVGDWTVRIWSEDVIA-SPLLSLD--------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred CCccceeeeeccceeEeccccCCC-Ccchhhh--------hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 877655544449999999974211 1222222 344569999999965 688999999999999998554321
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~ 377 (826)
. ..........+.+.|++.|+.|++|...|++.+|++..
T Consensus 479 --------------v-----~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 --------------V-----LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred --------------c-----ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 1 11111134467788899999999999999999999853
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.42 E-value=4.7e-11 Score=119.18 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=118.3
Q ss_pred cCCccee--eC-CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcE
Q 003360 232 LKDGSQS--HS-KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMV 307 (826)
Q Consensus 232 h~g~V~~--~s-~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V 307 (826)
+...+++ |. -+.++|.|.+-|-|..|||+..... ..++ .++..|+..|..|+|...+ +.||+.+.||.|
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~---~~vk----TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSv 221 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS---GTVK----TQLIAHDKEVYDIAFLKGSRDVFASVGADGSV 221 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccc---ccee----eEEEecCcceeEEEeccCccceEEEecCCCcE
Confidence 3445555 33 3668999999999999999943310 1122 2245799999999999865 689999999999
Q ss_pred EEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec-cCCeEEEEEccC-CCEEEEEe-cCCeEEEEecCCCeeEEee
Q 003360 308 RIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-NGSIISLNMNRN-SQHLAVGS-DQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-~~~V~~l~~s~~-g~~lasGs-~dG~V~vwD~~~~~~l~~~ 384 (826)
|+||++.-... .. +-.... ..+...|+|++. -+++|+-. ....|.|.|+|.+... .
T Consensus 222 RmFDLR~leHS---------------TI----IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp--v 280 (364)
T KOG0290|consen 222 RMFDLRSLEHS---------------TI----IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP--V 280 (364)
T ss_pred EEEEecccccc---------------eE----EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc--e
Confidence 99999943221 10 111111 456788899874 45566543 3456899999988654 2
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
....+|.+.|..++|.|. ....|.+++.|..+.+||+..
T Consensus 281 a~L~~H~a~VNgIaWaPh-----S~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 281 ARLRNHQASVNGIAWAPH-----SSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ehhhcCcccccceEecCC-----CCceeeecCCcceEEEEeccc
Confidence 334689999999999996 578999999999999999973
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.41 E-value=7.7e-09 Score=114.71 Aligned_cols=209 Identities=22% Similarity=0.308 Sum_probs=153.1
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCCCC-EEEEEECCCcEEEEe
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWD 259 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD 259 (826)
...+..|...|..++|++++..++.++ |+.+++|+...........+|...|.+ ++|++. ++++++.|++|++||
T Consensus 148 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd 227 (466)
T COG2319 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227 (466)
T ss_pred EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEE
Confidence 344678999999999999999888765 899999977653333333568889988 889988 555569999999998
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
...... +.. .+..|...+ ...|+|++..+++++.|+.+++|+.+.... ..
T Consensus 228 ~~~~~~--~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------~~---- 277 (466)
T COG2319 228 LSTGKL--LRS-------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----------------LL---- 277 (466)
T ss_pred CCCCcE--Eee-------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----------------EE----
Confidence 853321 110 123455454 338999998999999999999999984322 00
Q ss_pred EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE-ECC
Q 003360 340 VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA-TKD 418 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg-s~D 418 (826)
.....|...|.++.|+|++..+++++.|+.+.+||........... ...|...+..+.| .. ++..++.+ ..|
T Consensus 278 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-----~~~~~~~~~~~d 350 (466)
T COG2319 278 RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSF-SP-----DGSLLVSGGSDD 350 (466)
T ss_pred EEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEE-CC-----CCCEEEEeecCC
Confidence 1113456789999999988888889999999999998887664443 2345557888888 53 23455555 688
Q ss_pred CcEEEEECCCCc
Q 003360 419 SSVLVLDSDNGN 430 (826)
Q Consensus 419 g~V~iwd~~tg~ 430 (826)
+.+.+|+.....
T Consensus 351 ~~~~~~~~~~~~ 362 (466)
T COG2319 351 GTIRLWDLRTGK 362 (466)
T ss_pred CcEEeeecCCCc
Confidence 999999998776
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.40 E-value=2.4e-11 Score=126.49 Aligned_cols=225 Identities=12% Similarity=0.173 Sum_probs=153.5
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC--------C-----C--ceeec-ccccCCccee--eCCCCCEEE
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS--------V-----P--PLLDF-ETKLKDGSQS--HSKVKNLFI 247 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~--------~-----~--~~~~~-~~~h~g~V~~--~s~~~~~l~ 247 (826)
.|..|+..|+++.|+|+|..+++|+ ++.+.+|... . + +.... ..+|...+.. |++++++++
T Consensus 60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~ 139 (434)
T KOG1009|consen 60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV 139 (434)
T ss_pred cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceee
Confidence 3578999999999999999999999 7889999554 1 1 11111 2357777777 999999999
Q ss_pred EEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc---------
Q 003360 248 TGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA--------- 318 (826)
Q Consensus 248 Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~--------- 318 (826)
+|+.|.++++||+....+ ......|..-|..++|.|.++++++=+.|...+.+.+......
T Consensus 140 s~s~dns~~l~Dv~~G~l----------~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~ 209 (434)
T KOG1009|consen 140 SGSVDNSVRLWDVHAGQL----------LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMP 209 (434)
T ss_pred eeeccceEEEEEecccee----------EeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEee
Confidence 999999999999955553 1122467789999999999999999888887777665433110
Q ss_pred ---------------cccc----eEEEeecCCCCeEEE-------EE-------------------EEEeeccCCeEEEE
Q 003360 319 ---------------IENS----FLSFTGSKKGNSHII-------HS-------------------VKVMKINGSIISLN 353 (826)
Q Consensus 319 ---------------~~~~----~~~i~~s~~~~~~~~-------~~-------------------~~~~~~~~~V~~l~ 353 (826)
+... +..++++++|..+.. .+ ........++..+.
T Consensus 210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr 289 (434)
T KOG1009|consen 210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVR 289 (434)
T ss_pred ecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEE
Confidence 0000 111233444422110 00 00111123355555
Q ss_pred EccC------------------CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 354 MNRN------------------SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 354 ~s~~------------------g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
|+|. +..+|+++.+ .|.|||..+...++... .-|-.+|+.++|+. |+..|+..
T Consensus 290 ~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~--nihy~~iTDiaws~------dg~~l~vS 360 (434)
T KOG1009|consen 290 FSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVD--NIHYSAITDIAWSD------DGSVLLVS 360 (434)
T ss_pred eeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccccceEEEe--eeeeeeecceeecC------CCcEEEEe
Confidence 5542 3356777777 68999999987774433 45778999999998 69999999
Q ss_pred ECCCcEEEEECCCCc
Q 003360 416 TKDSSVLVLDSDNGN 430 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~ 430 (826)
+.||...+...+..+
T Consensus 361 S~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 361 STDGFCSLVTFEPWE 375 (434)
T ss_pred ccCCceEEEEEcchh
Confidence 999988777766443
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=9.8e-11 Score=114.13 Aligned_cols=240 Identities=15% Similarity=0.138 Sum_probs=160.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccC----
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKS---- 221 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~---- 221 (826)
.+++++.+.|+|.++.+.++. .++. -++.+...+....|+.+|..++|. .++|++++||.|+-|.-.
T Consensus 23 ~~l~agn~~G~iav~sl~sl~-----s~sa--~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 23 QYLFAGNLFGDIAVLSLKSLD-----SGSA--EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEE 93 (325)
T ss_pred eEEEEecCCCeEEEEEehhhh-----cccc--CCCCCcceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhh
Confidence 457888899999998887742 1111 112334444558999999999998 678888889999988321
Q ss_pred ---CCceeecccc-cCCc-----cee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEE
Q 003360 222 ---VPPLLDFETK-LKDG-----SQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALY 290 (826)
Q Consensus 222 ---~~~~~~~~~~-h~g~-----V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~ 290 (826)
...+.....+ |.+. |.+ ..|..+-+++++.|+.+.-||+..+..+ ..+.+|.+-|.++.
T Consensus 94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~----------r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ----------REYRGHTDYVHSVV 163 (325)
T ss_pred hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE----------EEEcCCcceeeeee
Confidence 1222222122 3332 233 5677777777779999999999555421 12458999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC-CeEEEEEccCCCEEEEEecCCe
Q 003360 291 YDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING-SIISLNMNRNSQHLAVGSDQGY 369 (826)
Q Consensus 291 fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~-~V~~l~~s~~g~~lasGs~dG~ 369 (826)
--.....+.+|++||+|||||.++.++.. .+ .+.+.. -...++.+ .|-+++.+.+ ++++|..- .
T Consensus 164 ~R~~~~qilsG~EDGtvRvWd~kt~k~v~-----~i-e~yk~~------~~lRp~~g~wigala~~ed--WlvCGgGp-~ 228 (325)
T KOG0649|consen 164 GRNANGQILSGAEDGTVRVWDTKTQKHVS-----MI-EPYKNP------NLLRPDWGKWIGALAVNED--WLVCGGGP-K 228 (325)
T ss_pred ecccCcceeecCCCccEEEEeccccceeE-----Ee-ccccCh------hhcCcccCceeEEEeccCc--eEEecCCC-c
Confidence 86667789999999999999999765421 00 000110 11122233 3888888766 67776644 6
Q ss_pred EEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 370 VYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 370 V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
+.+|.++..++...+.+ ..+|..+.|. ..++++++....|.-|.+. |..-
T Consensus 229 lslwhLrsse~t~vfpi----pa~v~~v~F~--------~d~vl~~G~g~~v~~~~l~-Gvl~ 278 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPI----PARVHLVDFV--------DDCVLIGGEGNHVQSYTLN-GVLQ 278 (325)
T ss_pred eeEEeccCCCceEEEec----ccceeEeeee--------cceEEEeccccceeeeeec-cEEE
Confidence 79999999887765653 3467777775 4677788878888888876 5443
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.39 E-value=6.3e-11 Score=119.86 Aligned_cols=252 Identities=14% Similarity=0.136 Sum_probs=159.2
Q ss_pred CCCceEEEeccCccEEEecchhHHHHHhhccCC-CCCCCCccceeeecccC-CCEEEEEEe-------eCCCeEEEec-C
Q 003360 143 PKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSR-SPPSAPKEVMLKMPFLD-SSITAMKLI-------TGNSFILSSA-D 212 (826)
Q Consensus 143 ~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~-~~~~~~~~~~~~l~~h~-~~Vt~~~fs-------~~~~~l~~~~-d 212 (826)
++...+++.+...-|.+|+.-.- - +..+ ..+.+. .....+...+ ..|...++. |+..+.++.+ +
T Consensus 59 PDGSciL~~sedn~l~~~nlP~d-l----ys~~~~~~~~~-~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 59 PDGSCILSLSEDNCLNCWNLPFD-L----YSKKADGPLNF-SKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred CCCceEEeecccCeeeEEecChh-h----cccCCCCcccc-ccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 45577788888899999876441 0 1111 111111 1111222222 234444443 4455666666 8
Q ss_pred CcEEEeccCCCceeec--ccccCCccee-----eCCCCCEEEEEECCCcEEEEeCCCC-ceeeeeecccccccccccCCC
Q 003360 213 EDYSLLAKSVPPLLDF--ETKLKDGSQS-----HSKVKNLFITGHSDGAINFWDVSCP-LFLLILSLKQQSEKDFSLSGI 284 (826)
Q Consensus 213 ~~i~~w~~~~~~~~~~--~~~h~g~V~~-----~s~~~~~l~Tgs~DGtVriWD~s~~-~~~~i~~l~~~~~~~~~~h~~ 284 (826)
.-|.+|+.-...+... ...|...+.+ |+|||..|++|.. .+||++|++.+ ..-.++..... .. .+..+
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~--~k-~gq~g 208 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTK--GK-FGQKG 208 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhc--cc-ccccc
Confidence 8999997655444332 1235555544 9999999998765 69999999322 21011111100 00 11236
Q ss_pred CeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 285 PLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 285 ~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
-|.|++|+|.. ..+++|+...++-||..... .++ ...+.|.+.||.|+|.++|.+|.+
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-----------------~pl----~llggh~gGvThL~~~edGn~lfs 267 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-----------------RPL----QLLGGHGGGVTHLQWCEDGNKLFS 267 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCC-----------------Cce----eeecccCCCeeeEEeccCcCeecc
Confidence 78999999965 59999999999999987632 222 345577889999999999999999
Q ss_pred Eec-CCeEEEEecCCCe-eEEeeecccCCCC-CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC-CceE
Q 003360 364 GSD-QGYVYLLDTEGPT-VLYQKHIASDISS-GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN-GNML 432 (826)
Q Consensus 364 Gs~-dG~V~vwD~~~~~-~l~~~~~~~~~~~-~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t-g~~i 432 (826)
|.. |-.|-.||+|... .++... +|.. .-..|.|..- .++++|++|+.||.|++||+.+ |+.+
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~L~---rhv~~TNQRI~FDld----~~~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYALE---RHVGDTNQRILFDLD----PKGEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred cccCCCeEEEEeehhccchhhhhh---hhccCccceEEEecC----CCCceeeccCCCccEEEEecCCCCCcc
Confidence 984 6689999998754 332222 3322 3445666541 1489999999999999999987 5534
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=3.6e-11 Score=137.56 Aligned_cols=210 Identities=16% Similarity=0.162 Sum_probs=135.9
Q ss_pred CEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee-ecc--cccCCccee----eCCCCCEEEEEECCCcEEEEeCCC---
Q 003360 194 SITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL-DFE--TKLKDGSQS----HSKVKNLFITGHSDGAINFWDVSC--- 262 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~-~~~--~~h~g~V~~----~s~~~~~l~Tgs~DGtVriWD~s~--- 262 (826)
+-..+.|+|-.+.++++. ...|++|+....... .|. .....+|+. .-.|..+++||+.||.||||+-..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 456788999999999988 678999975543333 231 123344555 345667999999999999998721
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
+...++.-...- .....+..+.=.-++|...+.+|++++.-..|+|||..+..... . +..
T Consensus 1146 ~~~eLVTaw~~L-s~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~-----d--------------iP~ 1205 (1387)
T KOG1517|consen 1146 KKPELVTAWSSL-SDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA-----D--------------IPY 1205 (1387)
T ss_pred CCceeEEeeccc-cccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe-----e--------------ccc
Confidence 221121111100 00011112222566788888888888889999999998543311 0 111
Q ss_pred eeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCC--eeEEEEeecccCCCCCcEEEEEECCC
Q 003360 343 MKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSG--IVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 343 ~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~--V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
....-||+|.-+. .|..+|.|..||.|++||.+....-........|+.. |..+.+.+. + -..|++|+.||
T Consensus 1206 -~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~---G--~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1206 -GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ---G--LGELVSGSQDG 1279 (1387)
T ss_pred -CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC---C--CcceeeeccCC
Confidence 1133477776654 4689999999999999999876432112333456666 888888873 1 12699999999
Q ss_pred cEEEEECCCC
Q 003360 420 SVLVLDSDNG 429 (826)
Q Consensus 420 ~V~iwd~~tg 429 (826)
.|++||++..
T Consensus 1280 ~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1280 DIQLLDLRMS 1289 (1387)
T ss_pred eEEEEecccC
Confidence 9999999964
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=6.7e-12 Score=127.93 Aligned_cols=147 Identities=18% Similarity=0.246 Sum_probs=101.5
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee--CCCeEEEec-CCcEEEecc
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT--GNSFILSSA-DEDYSLLAK 220 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~--~~~~l~~~~-d~~i~~w~~ 220 (826)
.+.+++++++.|.+.+||..+.. ++ ..+..+.+.+..++|.. .+..+.+++ ||+|++|+.
T Consensus 39 ~e~~vav~lSngsv~lyd~~tg~-~l----------------~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 39 FETAVAVSLSNGSVRLYDKGTGQ-LL----------------EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred cceeEEEEecCCeEEEEeccchh-hh----------------heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 44778999999999999988721 11 12356666777888877 455566677 999999976
Q ss_pred CCCc-eeeccc-ccCCcc-eeeC--CCCCEEEEEE----CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEE
Q 003360 221 SVPP-LLDFET-KLKDGS-QSHS--KVKNLFITGH----SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY 291 (826)
Q Consensus 221 ~~~~-~~~~~~-~h~g~V-~~~s--~~~~~l~Tgs----~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f 291 (826)
+... ...+.| .+.+.. .++. ..++++++|. .|-.|.+||+..... ++..+. +.|...||+|.|
T Consensus 102 Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-~l~~~~-------eSH~DDVT~lrF 173 (376)
T KOG1188|consen 102 RSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-LLRQLN-------ESHNDDVTQLRF 173 (376)
T ss_pred ecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-hhhhhh-------hhccCcceeEEe
Confidence 5422 222222 333322 3343 3677888885 478899999933221 122222 578899999999
Q ss_pred eCCC-CEEEEEeCCCcEEEEEeCCC
Q 003360 292 DGTS-RVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 292 sp~~-~~Lasgs~dg~V~iwd~~~~ 315 (826)
+|.. .+|++||.||.|.|||++..
T Consensus 174 HP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cCCCCCeEEeecccceEEeeecCCC
Confidence 9964 79999999999999999865
No 179
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=3.5e-10 Score=128.40 Aligned_cols=352 Identities=15% Similarity=0.199 Sum_probs=207.3
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEee------eCC
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVY------ADG 85 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~------~~~ 85 (826)
|...++|... +|++..+|+|+.||.|.+|.--. ........+.++|.. ...
T Consensus 204 Htf~~t~~~~-spn~~~~Aa~d~dGrI~vw~d~~----------------------~~~~~~t~t~lHWH~~~V~~L~fS 260 (792)
T KOG1963|consen 204 HTFNITCVAL-SPNERYLAAGDSDGRILVWRDFG----------------------SSDDSETCTLLHWHHDEVNSLSFS 260 (792)
T ss_pred hcccceeEEe-ccccceEEEeccCCcEEEEeccc----------------------cccccccceEEEecccccceeEEe
Confidence 3455888887 68999999999999999994221 122334556667753 334
Q ss_pred CCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhH
Q 003360 86 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 165 (826)
Q Consensus 86 ~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i 165 (826)
.+|..+..||. +.++..|.+.... ++ +--.+.+++.++.+.+.+ ....+.+.+.+|++.....+
T Consensus 261 ~~G~~LlSGG~----E~VLv~Wq~~T~~--kq--fLPRLgs~I~~i~vS~ds--------~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 261 SDGAYLLSGGR----EGVLVLWQLETGK--KQ--FLPRLGSPILHIVVSPDS--------DLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred cCCceEeeccc----ceEEEEEeecCCC--cc--cccccCCeeEEEEEcCCC--------CeEEEEecCceEEEEeccch
Confidence 47788888888 4567777665554 21 223466778887776543 55677788999999877664
Q ss_pred HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-Cceeec----ccccCC-----
Q 003360 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-PPLLDF----ETKLKD----- 234 (826)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-~~~~~~----~~~h~g----- 234 (826)
+... .-++.-+. .+.+ -..-.+-.+.+++.|-...++..+ .+.+.+|+.-. ..+..+ ...+.+
T Consensus 325 ~~k~--tIsgi~~~-~~~~---k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~ 398 (792)
T KOG1963|consen 325 EIKS--TISGIKPP-TPST---KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQ 398 (792)
T ss_pred hhhh--hccCccCC-Cccc---cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeE
Confidence 4321 11111111 0000 122334567777888555555544 77777774321 111111 122223
Q ss_pred -ccee--eCCCCCEEEEEE--------CCC--cEEEEeCC--CCceeeeeecccccccccccCCCCeEEEEEeCCC-C-E
Q 003360 235 -GSQS--HSKVKNLFITGH--------SDG--AINFWDVS--CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-R-V 297 (826)
Q Consensus 235 -~V~~--~s~~~~~l~Tgs--------~DG--tVriWD~s--~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~-~ 297 (826)
++.+ .+..|.+++|+- .|| .+|+|-.. .....+...+. ..|+..+.+.+|.+.. . .
T Consensus 399 v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~-------~PH~~~~vat~~~~~~rs~~ 471 (792)
T KOG1963|consen 399 VGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKIN-------NPHGNAFVATIFLNPTRSVR 471 (792)
T ss_pred EeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEe-------cCCCceeEEEEEecCcccce
Confidence 3344 566699999874 344 46789883 33332333333 5688666666665543 3 7
Q ss_pred EEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC
Q 003360 298 LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 298 Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~ 377 (826)
+++++.||.++||-+....... +.......+ .....++.++++++|+.||..|++|. |++|.+||..+
T Consensus 472 ~vta~~dg~~KiW~~~~~~n~~----------k~~s~W~c~-~i~sy~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~ 539 (792)
T KOG1963|consen 472 CVTASVDGDFKIWVFTDDSNIY----------KKSSNWTCK-AIGSYHKTPITALCFSQDGSLLAVSF-DDTITIWDYDT 539 (792)
T ss_pred eEEeccCCeEEEEEEecccccC----------cCccceEEe-eeeccccCcccchhhcCCCcEEEEec-CCEEEEecCCC
Confidence 9999999999999996432211 011111100 12223688899999999998666655 56899999998
Q ss_pred CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 378 PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 378 ~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
...+ .........++..+.|.... .....++.....++.+|++.+....-
T Consensus 540 ~~~l--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 540 KNEL--LCTEGSRNWPIAELLFTAQT----QNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred hhhh--hccccccccchHhHhhhccc----ccccceeeccCceEehHhhhhhheec
Confidence 5433 11112233444445544310 12234445567789999998777665
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.37 E-value=7.4e-11 Score=126.17 Aligned_cols=198 Identities=14% Similarity=0.197 Sum_probs=129.0
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV 222 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~ 222 (826)
+...+++.+++|.+++.+...- ....+..|.+.|.|..|+++|..|++++ ||.|++|....
T Consensus 74 ~~d~~~i~s~DGkf~il~k~~r------------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG 135 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKSAR------------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG 135 (737)
T ss_pred CcceEEEEcCCceEEEecccch------------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc
Confidence 3456678888899888665431 1223588999999999999999999998 99999997654
Q ss_pred CceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE
Q 003360 223 PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300 (826)
Q Consensus 223 ~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las 300 (826)
.+..........|.| |.|+.+-++-+.. |.+.|=-+.... ..++ ...|++-|.+++|++.+.++++
T Consensus 136 -MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~----k~i~------WkAHDGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 136 -MLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANS----KIIR------WRAHDGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred -hHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeeccccc----ceeE------EeccCcEEEEeecCccccceee
Confidence 222222334667788 8888775554433 234443332111 1122 3478899999999999999999
Q ss_pred EeCCCcEEEEEeCCC----CCccccceEEEeecCCCCeEEEEE---EEEeec-cCCeEEEEEccCCCEEEEEecCCeEEE
Q 003360 301 GDQSGMVRIFKLKYE----PHAIENSFLSFTGSKKGNSHIIHS---VKVMKI-NGSIISLNMNRNSQHLAVGSDQGYVYL 372 (826)
Q Consensus 301 gs~dg~V~iwd~~~~----~~~~~~~~~~i~~s~~~~~~~~~~---~~~~~~-~~~V~~l~~s~~g~~lasGs~dG~V~v 372 (826)
|++|-..+|||-... ...++-.+++++|+++. ...++. +++... .+.|..++||+||..+++|+..|.|.+
T Consensus 204 gGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~-~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 204 GGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEK-DYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cCCceeEEeecccCcccccCChhccceeeeeecccc-ceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 999999999997654 22333456666666652 222211 222222 344666666666666666666665543
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=5.5e-11 Score=121.35 Aligned_cols=149 Identities=17% Similarity=0.352 Sum_probs=115.3
Q ss_pred CEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 244 NLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG--TSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp--~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
..+|++..+|+||+||. +++. ...|.++...++.+.|.. ....+.+|+.||+|++||++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~-----------l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-- 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL-----------LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-- 107 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh-----------hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh--
Confidence 67999999999999999 5443 223567777888888876 4578999999999999999954321
Q ss_pred cceEEEeecCCCCeEEEEEEEEeecc-CCeEEEEEccCCCEEEEEec----CCeEEEEecCCCeeEEeeecccCCCCCee
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKIN-GSIISLNMNRNSQHLAVGSD----QGYVYLLDTEGPTVLYQKHIASDISSGIV 395 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~-~~V~~l~~s~~g~~lasGs~----dG~V~vwD~~~~~~l~~~~~~~~~~~~V~ 395 (826)
.. ..+..+. .+-.|++.+-.++.+++|.+ |-.|.+||+|..+-.. ..+...|..-|+
T Consensus 108 -------------a~----~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-~~~~eSH~DDVT 169 (376)
T KOG1188|consen 108 -------------AR----ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL-RQLNESHNDDVT 169 (376)
T ss_pred -------------hh----eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchh-hhhhhhccCcce
Confidence 00 2222223 45788888877888898874 6789999999877621 344567999999
Q ss_pred EEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 396 SLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+++|.|. +.+.|++||.||-|.+||...
T Consensus 170 ~lrFHP~-----~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 170 QLRFHPS-----DPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred eEEecCC-----CCCeEEeecccceEEeeecCC
Confidence 9999997 789999999999999999873
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=8.1e-12 Score=134.86 Aligned_cols=263 Identities=12% Similarity=0.085 Sum_probs=159.7
Q ss_pred ccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC
Q 003360 280 SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ 359 (826)
Q Consensus 280 ~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 359 (826)
..|...|+++.|+|....|++++.||++++|++....... ..+-.++ +.+..|.++|.|+++++++.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~---------~~~~epi----~tfraH~gPVl~v~v~~n~~ 357 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSA---------EKDVEPI----LTFRAHEGPVLCVVVPSNGE 357 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCcc---------ccceeee----EEEecccCceEEEEecCCce
Confidence 3466889999999999999999999999999995321100 0111222 67888999999999999999
Q ss_pred EEEEEecCCeEEEEecC---------CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 360 HLAVGSDQGYVYLLDTE---------GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 360 ~lasGs~dG~V~vwD~~---------~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
.+.+|+.||+|+.|++. .+..+ ..+..+|...|+.++++.. ...|++++.||+|+.|+.....
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl--~~~l~Ghtdavw~l~~s~~------~~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVL--SGTLLGHTDAVWLLALSST------KDRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccccCcchh--ccceeccccceeeeeeccc------ccceeeecCCceEEeeccCCcC
Confidence 99999999999999543 22233 3344689999999999985 7789999999999999988655
Q ss_pred eEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeee
Q 003360 431 MLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLY 510 (826)
Q Consensus 431 ~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~ 510 (826)
. .++ ..+......+++.+.+..-...-.+. .....++ .+ +- ....++++.-.. .....
T Consensus 430 ~-~~f-~~~~e~g~Plsvd~~ss~~a~~~~s~------~~~~~~~-----~~-~e---v~s~~~~~~s~~----~~~~~- 487 (577)
T KOG0642|consen 430 P-CTF-GEPKEHGYPLSVDRTSSRPAHSLASF------RFGYTSI-----DD-ME---VVSDLLIFESSA----SPGPR- 487 (577)
T ss_pred c-ccc-CCccccCCcceEeeccchhHhhhhhc------ccccccc-----hh-hh---hhhheeeccccC----CCccc-
Confidence 5 443 34444555666665542100000000 0000000 00 00 001122221110 00000
Q ss_pred eeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccccccccceeecCCCCCCCcccceeccCCCcEEEEcCC
Q 003360 511 KKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGN 590 (826)
Q Consensus 511 k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~ 590 (826)
..+...-++..+...-.+....|++|+++..-..+++.+....-..+....+.+++-..++.+.||.+.+|.-.
T Consensus 488 ------~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 488 ------RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred ------ccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence 00111111111445556667788888888777777777653222222222233677777888888888887653
Q ss_pred e
Q 003360 591 Q 591 (826)
Q Consensus 591 ~ 591 (826)
.
T Consensus 562 ~ 562 (577)
T KOG0642|consen 562 V 562 (577)
T ss_pred c
Confidence 3
No 183
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.35 E-value=4e-11 Score=128.57 Aligned_cols=222 Identities=15% Similarity=0.169 Sum_probs=147.0
Q ss_pred CCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEecc
Q 003360 143 PKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAK 220 (826)
Q Consensus 143 ~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~ 220 (826)
....-++++...|+++++|....+...+-... .......|||++|-|.++.++++. ++.+-+|+.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~-------------r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~ 249 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEE-------------RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDK 249 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhc-------------ccccccceEEEEEEeCCCceEEEEEecCceEEeec
Confidence 33455899999999999998773222111111 123347899999999887776655 777666654
Q ss_pred CCCceeecccccCCccee----eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCC
Q 003360 221 SVPPLLDFETKLKDGSQS----HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS 295 (826)
Q Consensus 221 ~~~~~~~~~~~h~g~V~~----~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~ 295 (826)
.. ..++.. ..+++..+... .|-. ..+. ++... ......|...+|+||+
T Consensus 250 ~~----------~~~~t~p~~~~~k~~~~f~i~-------t~ksk~~rN--Pv~~w--------~~~~g~in~f~FS~DG 302 (636)
T KOG2394|consen 250 EI----------VCGATAPSYQALKDGDQFAIL-------TSKSKKTRN--PVARW--------HIGEGSINEFAFSPDG 302 (636)
T ss_pred cc----------cccCCCCcccccCCCCeeEEe-------eeeccccCC--cccee--------EeccccccceeEcCCC
Confidence 21 111111 33444444332 2222 1100 11111 1223588999999999
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEec
Q 003360 296 RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 296 ~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~ 375 (826)
++||+.++||.+||||+.+..... . ++ ..-+...|++|||||++|++|++|-.|.||.+
T Consensus 303 ~~LA~VSqDGfLRvF~fdt~eLlg------------~-------mk--SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 303 KYLATVSQDGFLRIFDFDTQELLG------------V-------MK--SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ceEEEEecCceEEEeeccHHHHHH------------H-------HH--hhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 999999999999999998543210 0 00 01356899999999999999999999999999
Q ss_pred CCCeeEEeeecccCCCCCeeEEEEeecccCCC------------------------------------------CCcEEE
Q 003360 376 EGPTVLYQKHIASDISSGIVSLQFETCSLQGF------------------------------------------EKNFLV 413 (826)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~------------------------------------------d~~~l~ 413 (826)
...+++..- .+|.++|..++|.|+..... ..-.+-
T Consensus 362 ~erRVVARG---qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfG 438 (636)
T KOG2394|consen 362 EERRVVARG---QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFG 438 (636)
T ss_pred ccceEEEec---cccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEee
Confidence 999988433 58999999999996432110 113466
Q ss_pred EEECCCcEEEEECCC
Q 003360 414 IATKDSSVLVLDSDN 428 (826)
Q Consensus 414 sgs~Dg~V~iwd~~t 428 (826)
+.+.|..+.+||+.-
T Consensus 439 SVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 439 SVGQDTQLCLWDLTE 453 (636)
T ss_pred cccccceEEEEecch
Confidence 788899999999874
No 184
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=7.9e-11 Score=127.67 Aligned_cols=266 Identities=19% Similarity=0.254 Sum_probs=160.2
Q ss_pred ccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC
Q 003360 278 DFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN 357 (826)
Q Consensus 278 ~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 357 (826)
.+.+|.+.|++|+..|.|.+|++|+.||+|+||.+.++.+ ++.....+.|.|++|+|.
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc----------------------vr~~~~d~~I~~vaw~P~ 452 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC----------------------VRTVQFDSEIRSVAWNPL 452 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE----------------------EEEEeecceeEEEEecCC
Confidence 3568999999999999999999999999999999996655 666667788999999997
Q ss_pred CC--EEEEEecCCeEEEEecCCCeeEEe---eecccC---CCCC-eeEEEEeecccCCCCCcEEEEEECCCcEE--EEEC
Q 003360 358 SQ--HLAVGSDQGYVYLLDTEGPTVLYQ---KHIASD---ISSG-IVSLQFETCSLQGFEKNFLVIATKDSSVL--VLDS 426 (826)
Q Consensus 358 g~--~lasGs~dG~V~vwD~~~~~~l~~---~~~~~~---~~~~-V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~--iwd~ 426 (826)
+. .||++.... +.|.+..-|.-+.. ...... -..+ -.-+.|.............++-+....|+ -|..
T Consensus 453 ~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 453 SDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred CCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 65 456655554 66777654422210 000000 0001 11223443211111112233333344442 2332
Q ss_pred CCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccc
Q 003360 427 DNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVK 506 (826)
Q Consensus 427 ~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~ 506 (826)
+ |.++.+. .+....+.+.++-+. ....+..+.+.+...+...|++...++++|+.+.||||+|. .+
T Consensus 532 k-GDYlatV--~~~~~~~~VliHQLS------K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~-----kq 597 (733)
T KOG0650|consen 532 K-GDYLATV--MPDSGNKSVLIHQLS------KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLS-----KQ 597 (733)
T ss_pred C-CceEEEe--ccCCCcceEEEEecc------cccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehh-----HH
Confidence 2 5555442 222222223333332 11112222222222222367888899999999999999997 33
Q ss_pred eeeeeeecCCCCceeeEeeee-CCceEEEEEEeeceEEEeccCCcc--cccccc-----ccceeecCCCCCCCcccceec
Q 003360 507 KVLYKKKFHSSSCCWASTFYS-GSDVGLMLLFTSGKFEIRSLPELS--LLKETS-----IRGFVYLTPKPNSLSNTLMCS 578 (826)
Q Consensus 507 k~~~k~~~~~~~c~~~~~~~~-~~~~~lv~~~~~G~I~i~slP~L~--~l~~~s-----l~~~~~~~~~~~~~~~~~~~~ 578 (826)
..+.+ +. ..|-|.+.+.. ++|..|++..-++.+..+.|. |. ++.... +..++|+ ..+--..++
T Consensus 598 elvKk--L~-tg~kwiS~msihp~GDnli~gs~d~k~~WfDld-lsskPyk~lr~H~~avr~Va~H-----~ryPLfas~ 668 (733)
T KOG0650|consen 598 ELVKK--LL-TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD-LSSKPYKTLRLHEKAVRSVAFH-----KRYPLFASG 668 (733)
T ss_pred HHHHH--Hh-cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc-cCcchhHHhhhhhhhhhhhhhc-----cccceeeee
Confidence 22333 33 68889888877 899999999999999888764 33 444432 4467887 455556677
Q ss_pred cCCCcEEEEcC
Q 003360 579 SWDGELIMVNG 589 (826)
Q Consensus 579 s~~G~i~~~~g 589 (826)
|+||++++..|
T Consensus 669 sdDgtv~Vfhg 679 (733)
T KOG0650|consen 669 SDDGTVIVFHG 679 (733)
T ss_pred cCCCcEEEEee
Confidence 88899988776
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.34 E-value=2.1e-10 Score=114.41 Aligned_cols=208 Identities=15% Similarity=0.220 Sum_probs=142.3
Q ss_pred ceeeec-ccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCce--eec----ccccCCccee--eCC--CCCEEEEEECC
Q 003360 184 VMLKMP-FLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPL--LDF----ETKLKDGSQS--HSK--VKNLFITGHSD 252 (826)
Q Consensus 184 ~~~~l~-~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~--~~~----~~~h~g~V~~--~s~--~~~~l~Tgs~D 252 (826)
..-.|+ .+.+.|.|+.|.|++..+++-.|..|.+|+...... ... ...+....++ |+| +++.++| ..|
T Consensus 114 ~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d 192 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSD 192 (370)
T ss_pred HhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCC
Confidence 333455 556799999999999999888899999996443222 111 1223333444 655 6776666 468
Q ss_pred CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCC
Q 003360 253 GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR-VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKK 331 (826)
Q Consensus 253 GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~-~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~ 331 (826)
++++.||..... ..+.++ ..|+..|..|.|+|+-+ +|++|+.||.|+|||.+......
T Consensus 193 ~tl~~~D~RT~~--~~~sI~-------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv------------ 251 (370)
T KOG1007|consen 193 STLQFWDLRTMK--KNNSIE-------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV------------ 251 (370)
T ss_pred CcEEEEEccchh--hhcchh-------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc------------
Confidence 999999994322 123344 56888999999999875 68899999999999998543310
Q ss_pred CCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCe----eEE----------------------ee
Q 003360 332 GNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPT----VLY----------------------QK 384 (826)
Q Consensus 332 ~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~----~l~----------------------~~ 384 (826)
.....|.-.|.++.|+|.. +++++|+.|..|.+|....-. +.+ ..
T Consensus 252 --------~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l 323 (370)
T KOG1007|consen 252 --------QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQL 323 (370)
T ss_pred --------cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccc
Confidence 1222344469999999954 578899999999999764321 110 01
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
.....|...|.+++|+.. |.=++++.+-||.+.|=..
T Consensus 324 ~tydehEDSVY~~aWSsa-----dPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 324 ETYDEHEDSVYALAWSSA-----DPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccceEEEeeccC-----CCeeEEEeccCceEEeecC
Confidence 123568889999999986 4556677888998876544
No 186
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.33 E-value=5.2e-11 Score=123.36 Aligned_cols=139 Identities=15% Similarity=0.196 Sum_probs=112.4
Q ss_pred ccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc
Q 003360 278 DFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR 356 (826)
Q Consensus 278 ~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~ 356 (826)
.+.+|.++|..++|+|. ...+|+||+|.+|.||++-.+-... +-.... +.+..|...|--++|+|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-----------~ltepv---v~L~gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-----------DLTEPV---VELYGHQRRVGLVQWHP 141 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-----------Ccccce---EEEeecceeEEEEeecc
Confidence 45789999999999995 4789999999999999997542211 111111 44556777899999999
Q ss_pred CC-CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 357 NS-QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 357 ~g-~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.- +.|++++.|.+|.+||+.++..+.+. .|..-|.++.|+. ||.+|++.+.|..|+|||.++|+.+...
T Consensus 142 tA~NVLlsag~Dn~v~iWnv~tgeali~l----~hpd~i~S~sfn~------dGs~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 142 TAPNVLLSAGSDNTVSIWNVGTGEALITL----DHPDMVYSMSFNR------DGSLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred cchhhHhhccCCceEEEEeccCCceeeec----CCCCeEEEEEecc------CCceeeeecccceeEEEcCCCCcEeeec
Confidence 53 57889999999999999999988554 3889999999998 7999999999999999999999999886
Q ss_pred eccCC
Q 003360 436 LIHPK 440 (826)
Q Consensus 436 ~~~~~ 440 (826)
..|..
T Consensus 212 ~~heG 216 (472)
T KOG0303|consen 212 VAHEG 216 (472)
T ss_pred ccccC
Confidence 55544
No 187
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.33 E-value=1.2e-10 Score=135.41 Aligned_cols=199 Identities=14% Similarity=0.163 Sum_probs=131.4
Q ss_pred cccCCccee---eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc
Q 003360 230 TKLKDGSQS---HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM 306 (826)
Q Consensus 230 ~~h~g~V~~---~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~ 306 (826)
..|...+.. .++.+.+++||+.||+||+||...-.... ....+.......+..+.++.+++.+..+|+|+.||.
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 446666655 55666999999999999999982211000 001111122234579999999999999999999999
Q ss_pred EEEEEeCCCCCcc-------------ccceEEEe-ecC-CCCeE----------EEEE---------EEEeeccCCeEEE
Q 003360 307 VRIFKLKYEPHAI-------------ENSFLSFT-GSK-KGNSH----------IIHS---------VKVMKINGSIISL 352 (826)
Q Consensus 307 V~iwd~~~~~~~~-------------~~~~~~i~-~s~-~~~~~----------~~~~---------~~~~~~~~~V~~l 352 (826)
|++.++......+ ...+..+. +.. .+... ..+. ++....+|.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 9999998631110 00111111 100 01100 0000 2223337889999
Q ss_pred EEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECCCCce
Q 003360 353 NMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNGNM 431 (826)
Q Consensus 353 ~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~tg~~ 431 (826)
+.+|.+.++++|+..|.+.+||+|=+..+ ..+...+..+|..+...+. ++-++-.+.+++ ..+.|.+|+..+|.+
T Consensus 1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i--~sw~~P~~~~i~~v~~~~~--~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPI--LSWEHPARAPIRHVWLCPT--YPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecCCceEEEEEeecCcee--ecccCcccCCcceEEeecc--CCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999999999999999988877 4444567789999988885 221233344444 577899999999976
Q ss_pred EEee
Q 003360 432 LSTN 435 (826)
Q Consensus 432 i~~~ 435 (826)
-.++
T Consensus 1278 ~~vl 1281 (1431)
T KOG1240|consen 1278 QTVL 1281 (1431)
T ss_pred eEEE
Confidence 6665
No 188
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.31 E-value=5e-11 Score=129.42 Aligned_cols=157 Identities=13% Similarity=0.264 Sum_probs=116.5
Q ss_pred eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCC
Q 003360 239 HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
|.| |.+.|++++.||.|++|.+...-+ -......+..+..|...|+.+.|+|- ...|++++.|-+|++||+....
T Consensus 635 WdPFD~~rLAVa~ddg~i~lWr~~a~gl---~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~ 711 (1012)
T KOG1445|consen 635 WDPFDDERLAVATDDGQINLWRLTANGL---PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK 711 (1012)
T ss_pred cCCCChHHeeecccCceEEEEEeccCCC---CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh
Confidence 666 456899999999999999943321 11122224456789999999999995 5789999999999999998543
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee-EEeeecccCCCCCee
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV-LYQKHIASDISSGIV 395 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~-l~~~~~~~~~~~~V~ 395 (826)
.. .++..|.+.|..++|||+|+++|+.+.||+|+||..+++.. ++...-. ....-.
T Consensus 712 ~~---------------------~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp--vgtRgA 768 (1012)
T KOG1445|consen 712 LY---------------------SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGP--VGTRGA 768 (1012)
T ss_pred hh---------------------heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCC--ccCcce
Confidence 21 56677899999999999999999999999999999987653 3222211 112223
Q ss_pred EEEEeecccCCCCCcEEEEEECCC----cEEEEECC
Q 003360 396 SLQFETCSLQGFEKNFLVIATKDS----SVLVLDSD 427 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~Dg----~V~iwd~~ 427 (826)
.|.|.- |+.++++.+.|. .|.+||..
T Consensus 769 Ri~wac------dgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 769 RILWAC------DGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred eEEEEe------cCcEEEEecccccchhhhhhhhhh
Confidence 466665 688888888766 46777765
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=3.6e-10 Score=110.23 Aligned_cols=175 Identities=14% Similarity=0.142 Sum_probs=121.4
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC-
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH- 317 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~- 317 (826)
++|.+++|++|..+|.|-|..+..-.-..-+.-..........|+.+|..++|+ ..+|++|+. |.|+=|.++....
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es 94 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEES 94 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhh
Confidence 889999999999999999998721110000000000122236789999999998 456777754 9999999974321
Q ss_pred ccccceEEEeecCCCCeEEEEEEEEeeccC-CeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeE
Q 003360 318 AIENSFLSFTGSKKGNSHIIHSVKVMKING-SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 396 (826)
Q Consensus 318 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~-~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~s 396 (826)
.+......+. .+ .+.....- .|++|-..|..+-++.+..|+.++-||+.++++.... .+|.+.|.+
T Consensus 95 ~~~K~lwe~~-----~P-----~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~---rGHtDYvH~ 161 (325)
T KOG0649|consen 95 LATKRLWEVK-----IP-----MQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY---RGHTDYVHS 161 (325)
T ss_pred ccchhhhhhc-----Cc-----cccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE---cCCcceeee
Confidence 1100000000 00 11111122 3899999987777777779999999999999987444 589999999
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+.-... ...+++|+.||++++||.+|++++.++
T Consensus 162 vv~R~~------~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 162 VVGRNA------NGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred eeeccc------CcceeecCCCccEEEEeccccceeEEe
Confidence 987653 778999999999999999999999875
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.30 E-value=2.6e-10 Score=129.38 Aligned_cols=219 Identities=15% Similarity=0.118 Sum_probs=141.0
Q ss_pred cccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCce--e-e---cccccCCccee--eC--CCCCEEEEEECCCcEE
Q 003360 189 PFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPL--L-D---FETKLKDGSQS--HS--KVKNLFITGHSDGAIN 256 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~--~-~---~~~~h~g~V~~--~s--~~~~~l~Tgs~DGtVr 256 (826)
-.-.+.|+|++|+|..+.+++|+ +|.|.+|+...... . . ....|...++. |- +.+.-+++++.||.|.
T Consensus 239 ~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 239 LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 34567899999999888877766 99999996544222 1 1 13457777777 43 3335689999999999
Q ss_pred EEeCCCCce-eeeeecccccccccccCC-CCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 257 FWDVSCPLF-LLILSLKQQSEKDFSLSG-IPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 257 iWD~s~~~~-~~i~~l~~~~~~~~~~h~-~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
.|++..-.. .....+.......-..+. ..+++++|.+. -..|++|++.|.|.-=.......... +. ..
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-----~~----~~ 389 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-----VS----YK 389 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-----cc----cc
Confidence 998732111 000001110000001111 68999999885 46899999999886522221111000 00 00
Q ss_pred eEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC-CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 334 SHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE-GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~-~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
.+ .....|.++|+++.++|-+..+...+.|.+|+||... ....++.. ..+...|++++|+|. -...+
T Consensus 390 ~~----~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~---~~~~~~v~~vaWSpt-----rpavF 457 (555)
T KOG1587|consen 390 GH----STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL---DSSPDYVTDVAWSPT-----RPAVF 457 (555)
T ss_pred cc----ccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh---hhccceeeeeEEcCc-----CceEE
Confidence 11 2445678999999999988766655559999999987 55555333 345667999999996 34566
Q ss_pred EEEECCCcEEEEECCC
Q 003360 413 VIATKDSSVLVLDSDN 428 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~t 428 (826)
+++..||.|.+||+..
T Consensus 458 ~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQ 473 (555)
T ss_pred EEEcCCCceehhhhhc
Confidence 7777899999999973
No 191
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.30 E-value=1.8e-08 Score=111.66 Aligned_cols=233 Identities=22% Similarity=0.320 Sum_probs=161.7
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccC-CCEEEEEE-eeCCC-eEEE-ec-CCcEEEeccC
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLD-SSITAMKL-ITGNS-FILS-SA-DEDYSLLAKS 221 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~Vt~~~f-s~~~~-~l~~-~~-d~~i~~w~~~ 221 (826)
.++....++.+.+|+...-. .....+..+. ..+..+.+ .+++. .++. +. |+.+.+|+..
T Consensus 79 ~~~~~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 79 LLLSGSSDGTIKLWDLDNGE----------------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred EEEEecCCCcEEEEEcCCCc----------------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 34445568888888876611 1112223322 36777777 67777 3333 34 8899999766
Q ss_pred C-CceeecccccCCccee--eCCCCCEEEEEEC-CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCC-
Q 003360 222 V-PPLLDFETKLKDGSQS--HSKVKNLFITGHS-DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR- 296 (826)
Q Consensus 222 ~-~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~-DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~- 296 (826)
. .........|...|.+ |++++..+++++. |+.+++|+...... +.. +..|...|.+++|+|++.
T Consensus 143 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP--LST--------LAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred CCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce--EEe--------eccCCCceEEEEEcCCcce
Confidence 4 2233333678888886 9999999999886 99999999954221 111 234778999999999998
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~ 376 (826)
.+++++.|+.|++||........ .....|...+ ...|++++.++++++.|+.+++||++
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~--------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLR--------------------STLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEe--------------------eecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 55555999999999776221100 0122233333 22899999889999999999999998
Q ss_pred CCee-EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 377 GPTV-LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 377 ~~~~-l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.... +... ..|...|.++.|.| ++..+++++.|+.+.+|+..++......
T Consensus 272 ~~~~~~~~~---~~~~~~v~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 322 (466)
T COG2319 272 SSSSLLRTL---SGHSSSVLSVAFSP------DGKLLASGSSDGTVRLWDLETGKLLSSL 322 (466)
T ss_pred CCCcEEEEE---ecCCccEEEEEECC------CCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence 7765 3222 46788999999998 4777888999999999999887766554
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.29 E-value=1.7e-11 Score=137.07 Aligned_cols=218 Identities=14% Similarity=0.142 Sum_probs=156.9
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
-.+.+|...|.|+.|...|.++++|+ |..+++|.........-..+|.+.++. .+.++.++++++.|..||+|-+..
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 34678999999999999999999999 888999987665555555899999999 666777899999999999999955
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc--------cc-cce----------
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA--------IE-NSF---------- 323 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~--------~~-~~~---------- 323 (826)
... +..+.+|.++|++|+|+|-. +.+.||++++||.+-.... .+ .-+
T Consensus 264 ~~p----------vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~ 329 (1113)
T KOG0644|consen 264 GAP----------VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD 329 (1113)
T ss_pred Cch----------HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc
Confidence 442 22234799999999999964 7889999999999822110 00 000
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-----------CEEEEEecCCeEEEEecCCCeeEEeeecccCCCC
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-----------QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISS 392 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-----------~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~ 392 (826)
.+.+.+.++..-. . ..-+++|..++ ..++++-.+-.+.+|++..+..++ ...+|..
T Consensus 330 ~f~Tgs~d~ea~n---~-------e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H---~l~ghsd 396 (1113)
T KOG0644|consen 330 RFLTGSRDGEARN---H-------EFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH---NLMGHSD 396 (1113)
T ss_pred ccccccCCccccc---c-------hhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhh---hhccccc
Confidence 1112222222210 0 01122222222 344555566778899998887773 3458888
Q ss_pred CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.+..+.++|. +..+..+++.||...|||+--|..+..+
T Consensus 397 ~~yvLd~Hpf-----n~ri~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 397 EVYVLDVHPF-----NPRIAMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred ceeeeeecCC-----CcHhhhhccCCCceEeeecccCCcceee
Confidence 9999999997 6778889999999999999988877665
No 193
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.27 E-value=9.3e-09 Score=104.49 Aligned_cols=301 Identities=11% Similarity=0.114 Sum_probs=156.5
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEE
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLY 91 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ll 91 (826)
++-+..+++|. .|-+.+++|.++| .++++.+........+....+.. +..+=+-+ ..|.
T Consensus 4 ~~~~~lsvs~N-QD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~--------------~veMLfR~-----N~la 62 (346)
T KOG2111|consen 4 EEPKTLSVSFN-QDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFK--------------IVEMLFRS-----NYLA 62 (346)
T ss_pred ccCceeEEEEc-cCCceEEEEecCc-eEEEecCchhhhhhhccccCchh--------------hhhHhhhh-----ceEE
Confidence 45567789995 6999999998777 68888776411100000000011 11110100 1233
Q ss_pred EEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhh
Q 003360 92 IMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQ 171 (826)
Q Consensus 92 i~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~ 171 (826)
+.||..-..-+.-.++.++... +.....+.+..++.++.+-.. -+|+..++.|++|.-..--..+..
T Consensus 63 LVGGg~~pky~pNkviIWDD~k--~~~i~el~f~~~I~~V~l~r~-----------riVvvl~~~I~VytF~~n~k~l~~ 129 (346)
T KOG2111|consen 63 LVGGGSRPKYPPNKVIIWDDLK--ERCIIELSFNSEIKAVKLRRD-----------RIVVVLENKIYVYTFPDNPKLLHV 129 (346)
T ss_pred EecCCCCCCCCCceEEEEeccc--CcEEEEEEeccceeeEEEcCC-----------eEEEEecCeEEEEEcCCChhheee
Confidence 3444322222222333333222 222355666777777665432 256666778888865531011100
Q ss_pred ccCCCCCCCCccceeeecccCC-CEEEEEEeeCCCeEEEec--CCcEEEeccCCCce--eecccccCCccee--eCCCCC
Q 003360 172 YQSRSPPSAPKEVMLKMPFLDS-SITAMKLITGNSFILSSA--DEDYSLLAKSVPPL--LDFETKLKDGSQS--HSKVKN 244 (826)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~h~~-~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~--~~~~~~h~g~V~~--~s~~~~ 244 (826)
.. ....| .+.+++-..+...|+.-+ -|.+.+-+...... ......|...|.| ...+|.
T Consensus 130 ~e---------------t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt 194 (346)
T KOG2111|consen 130 IE---------------TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT 194 (346)
T ss_pred ee---------------cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc
Confidence 00 00001 122222222223333322 45565553221111 1112679999999 889999
Q ss_pred EEEEEECCCc-EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc--c
Q 003360 245 LFITGHSDGA-INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE--N 321 (826)
Q Consensus 245 ~l~Tgs~DGt-VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~--~ 321 (826)
++||++..|| |||||...+.+ +++++.- .....|.+|+|+|++.+||++|..|+|.||.++....... .
T Consensus 195 ~vATaStkGTLIRIFdt~~g~~--l~E~RRG------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~S 266 (346)
T KOG2111|consen 195 LVATASTKGTLIRIFDTEDGTL--LQELRRG------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESS 266 (346)
T ss_pred EEEEeccCcEEEEEEEcCCCcE--eeeeecC------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccc
Confidence 9999999998 68999955552 3445421 1237899999999999999999999999999986532111 1
Q ss_pred ceEEEe-ecCCCCeEEEEE-EEEeeccCCeEEEEEccCCCEEEEEecCCeE
Q 003360 322 SFLSFT-GSKKGNSHIIHS-VKVMKINGSIISLNMNRNSQHLAVGSDQGYV 370 (826)
Q Consensus 322 ~~~~i~-~s~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V 370 (826)
+..... .-+....- .+. .++....++...++|-.+.+.|+..+.||+-
T Consensus 267 Sl~~~~~~lpky~~S-~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy 316 (346)
T KOG2111|consen 267 SLSFKRLVLPKYFSS-EWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY 316 (346)
T ss_pred cccccccccchhccc-ceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence 111000 00000000 000 2333335566677777664456556666764
No 194
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=3.1e-10 Score=117.07 Aligned_cols=212 Identities=13% Similarity=0.144 Sum_probs=147.8
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc------CCC-ceeecccccCCccee--eCCCCCEEEEEECCCcEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK------SVP-PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINF 257 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~------~~~-~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVri 257 (826)
+..|.+-|.++.|+.++++|++|+ |..+++|+. +.+ ++..+..+|...|.| |....+.+.+|..+|+|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 568999999999999999999999 888999953 232 333345678889999 8888999999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
.|+...+. ++.... .-..+.|..+..+|....|++.+.+|.|.+||.+..+... . .
T Consensus 132 HDiEt~qs--i~V~~~------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~--~-----------~--- 187 (609)
T KOG4227|consen 132 HDIETKQS--IYVANE------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI--S-----------L--- 187 (609)
T ss_pred eeccccee--eeeecc------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC--c-----------e---
Confidence 99944442 222220 1123689999999999999999999999999998554311 0 1
Q ss_pred EEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeE-EeeecccCC---CCCeeEEEEeecccCCCCCcEE
Q 003360 338 HSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVL-YQKHIASDI---SSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l-~~~~~~~~~---~~~V~sl~f~~~~~~~~d~~~l 412 (826)
+-..........+.|+|.. .+|++.++.|-+-|||++.++-. +......+. ...-.++.|++ +|..+
T Consensus 188 --~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~------~G~Q~ 259 (609)
T KOG4227|consen 188 --VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP------SGNQF 259 (609)
T ss_pred --eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC------CCCee
Confidence 1011113346677888854 57788999999999999876532 211111111 11234567777 47777
Q ss_pred EEEECCCcEEEEECCCCce
Q 003360 413 VIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~tg~~ 431 (826)
++--....-.+||..+.++
T Consensus 260 msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred hhhhccCCCEEeeeecccc
Confidence 7766555566777775443
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.26 E-value=7.2e-09 Score=107.23 Aligned_cols=301 Identities=15% Similarity=0.171 Sum_probs=171.6
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
...+...+| ..++..|.+|+.||.-. ++.... -+.. .......-|.-+=+. +.|++
T Consensus 5 ~~ti~~~~~-Nqd~~~lsvGs~~Gyk~-~~~~~~---------------~k~~-~~~~~~~~IvEmLFS------SSLva 60 (391)
T KOG2110|consen 5 KPTINFIGF-NQDSTLLSVGSKDGYKI-FSCSPF---------------EKCF-SKDTEGVSIVEMLFS------SSLVA 60 (391)
T ss_pred Ccceeeeee-ccceeEEEccCCCceeE-EecCch---------------HHhh-cccCCCeEEEEeecc------cceeE
Confidence 567888898 46999999999999754 444332 0000 000011112222121 23333
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
.-+.+. +..+.++.+...+... .+....++.++.+- ...++|++ ..++|+||...++-+-
T Consensus 61 iV~~~q--pr~Lkv~~~Kk~~~IC----e~~fpt~IL~VrmN----------r~RLvV~L-ee~IyIydI~~MklLh--- 120 (391)
T KOG2110|consen 61 IVSIKQ--PRKLKVVHFKKKTTIC----EIFFPTSILAVRMN----------RKRLVVCL-EESIYIYDIKDMKLLH--- 120 (391)
T ss_pred EEecCC--CceEEEEEcccCceEE----EEecCCceEEEEEc----------cceEEEEE-cccEEEEecccceeeh---
Confidence 322222 3456666555444332 22233344433221 12334444 4569999998853211
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEE-ec--CCcEEEeccCCCceeecccccCCccee--eCCCCCEEE
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS-SA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI 247 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~-~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~ 247 (826)
.....+.+.-.+.+++++..+.+++. ++ .|.|.+|+...-.....-..|++.+.+ |+++|.+||
T Consensus 121 -----------TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llA 189 (391)
T KOG2110|consen 121 -----------TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLA 189 (391)
T ss_pred -----------hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEE
Confidence 11112233344666666667778887 33 678999976543333333689999999 999999999
Q ss_pred EEECCCcE-EEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccce---
Q 003360 248 TGHSDGAI-NFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF--- 323 (826)
Q Consensus 248 Tgs~DGtV-riWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~--- 323 (826)
|++..|+| ||+.+..+++ +++++.- .....|.+|+|+|++.+|++.+..++|.||++.........+.
T Consensus 190 TASeKGTVIRVf~v~~G~k--l~eFRRG------~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~ 261 (391)
T KOG2110|consen 190 TASEKGTVIRVFSVPEGQK--LYEFRRG------TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAG 261 (391)
T ss_pred EeccCceEEEEEEcCCccE--eeeeeCC------ceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCC
Confidence 99999985 8999944442 3555421 1126899999999999999999999999999986532211110
Q ss_pred --EEEeecCCCCe---EEE----E---EEEEeec--cC--CeEEEEEccCCCEEEEEecCCeEEEEecC
Q 003360 324 --LSFTGSKKGNS---HII----H---SVKVMKI--NG--SIISLNMNRNSQHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 324 --~~i~~s~~~~~---~~~----~---~~~~~~~--~~--~V~~l~~s~~g~~lasGs~dG~V~vwD~~ 376 (826)
....+++.... -.+ . ....... .+ .+..+.-.+...++.+++.||.++.+.+.
T Consensus 262 ~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~ 330 (391)
T KOG2110|consen 262 TSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLP 330 (391)
T ss_pred CcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcC
Confidence 01111110000 000 0 0111111 11 24444434577889999999999998763
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.26 E-value=3.8e-10 Score=120.83 Aligned_cols=157 Identities=19% Similarity=0.226 Sum_probs=116.8
Q ss_pred EEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCC
Q 003360 207 ILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGI 284 (826)
Q Consensus 207 l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~ 284 (826)
+++.+||.+.+.+.... .......|.+.+.+ |+|+|.-|+|+++||.|+||.-++-.... + -....
T Consensus 79 ~i~s~DGkf~il~k~~r-VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRSt---l--------~Q~~~ 146 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSAR-VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRST---V--------VQNEE 146 (737)
T ss_pred EEEcCCceEEEecccch-hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHH---H--------hhcCc
Confidence 33444888888765542 22233679999999 99999999999999999999987654211 1 11336
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG 364 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG 364 (826)
+|.|++|.|++..++-+. .|++.|=-+..+.. . ++...|.+-|.++.|++...++++|
T Consensus 147 ~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k----------------~-----i~WkAHDGiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQ-GGHISIKPLAANSK----------------I-----IRWRAHDGLVLSLSWSTQSNIIASG 204 (737)
T ss_pred eeEEEEECCCCCceEEec-CCeEEEeecccccc----------------e-----eEEeccCcEEEEeecCccccceeec
Confidence 899999999987665543 33455544442211 1 6777889999999999999999999
Q ss_pred ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 365 SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 365 s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
++|-..+|||- .|..+|+.. .|.-+|++++|.|
T Consensus 205 GED~kfKvWD~-~G~~Lf~S~---~~ey~ITSva~np 237 (737)
T KOG1524|consen 205 GEDFRFKIWDA-QGANLFTSA---AEEYAITSVAFNP 237 (737)
T ss_pred CCceeEEeecc-cCcccccCC---hhccceeeeeecc
Confidence 99999999998 466665543 6778999999999
No 197
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.24 E-value=4.7e-10 Score=112.03 Aligned_cols=205 Identities=13% Similarity=0.145 Sum_probs=139.8
Q ss_pred cccCCCEEEEEEeeCCCeEEEe-c----CC----cEEEeccCCC----c------eeecccccCCccee--eCCCCCEEE
Q 003360 189 PFLDSSITAMKLITGNSFILSS-A----DE----DYSLLAKSVP----P------LLDFETKLKDGSQS--HSKVKNLFI 247 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~-~----d~----~i~~w~~~~~----~------~~~~~~~h~g~V~~--~s~~~~~l~ 247 (826)
..|.+.|..++-+|-.+.+++. - |. .+.+|....+ . +..+...+-|.|.| |.|++..++
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kla 139 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLA 139 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeE
Confidence 3455788888888866655542 1 11 2567843211 1 11122346678888 999999888
Q ss_pred EEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 248 TGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG--TSRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 248 Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp--~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
+-. |..|.+|++ ..... +..+..... ..+....++-+|+| ++..+++. .|+++..||+++..+..
T Consensus 140 sm~-dn~i~l~~l~ess~~--vaev~ss~s---~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~----- 207 (370)
T KOG1007|consen 140 SMD-DNNIVLWSLDESSKI--VAEVLSSES---AEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNN----- 207 (370)
T ss_pred Eec-cCceEEEEcccCcch--heeeccccc---ccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhc-----
Confidence 765 889999999 44431 111221101 12445677888998 56666655 67899999999653321
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecc
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~ 403 (826)
-....|...|..|.|+|+-+ +||+|++||.|++||+|..+.. .....+|.-.|+++.|.|.
T Consensus 208 ---------------sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p--v~el~~HsHWvW~VRfn~~- 269 (370)
T KOG1007|consen 208 ---------------SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP--VQELPGHSHWVWAVRFNPE- 269 (370)
T ss_pred ---------------chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc--ccccCCCceEEEEEEecCc-
Confidence 01112344599999999876 4788999999999999987654 3444689999999999995
Q ss_pred cCCCCCcEEEEEECCCcEEEEECC
Q 003360 404 LQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 404 ~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
-.++|++|++|..|.+|...
T Consensus 270 ----hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 270 ----HDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred ----cceEEEecCCCceeEEEecc
Confidence 47889999999999999876
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.23 E-value=1.2e-08 Score=111.91 Aligned_cols=206 Identities=9% Similarity=0.054 Sum_probs=125.2
Q ss_pred CCEEEEEEeeCCCeEEEec--CCcEEEeccC-CCceeecc-cccCCccee--eCCCCCEEEEEE-CCCcEEEEeCC-CCc
Q 003360 193 SSITAMKLITGNSFILSSA--DEDYSLLAKS-VPPLLDFE-TKLKDGSQS--HSKVKNLFITGH-SDGAINFWDVS-CPL 264 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~-~~~~~~~~-~~h~g~V~~--~s~~~~~l~Tgs-~DGtVriWD~s-~~~ 264 (826)
+....++++|+++.++++. ++.+.+|+.. ...+.... ....+.... ++|++++|++++ .++.|.+||+. .+.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~ 114 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI 114 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence 4566789999999987764 6778888543 21221111 112222222 899999777765 48999999994 222
Q ss_pred e-eeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 265 F-LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 265 ~-~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
. ..+..+ .+......++|+|++++++++ ..++.|.+||+......... .... ..
T Consensus 115 ~~~~~~~~---------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~-----------~~~~---~~- 170 (330)
T PRK11028 115 PVAPIQII---------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ-----------EPAE---VT- 170 (330)
T ss_pred CCCceeec---------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc-----------CCCc---ee-
Confidence 1 011111 122346778999999888655 45699999999742110000 0000 01
Q ss_pred eeccCCeEEEEEccCCCEEEEEec-CCeEEEEecCC--Cee--EEeeecccC---CCCCeeEEEEeecccCCCCCcEEEE
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSD-QGYVYLLDTEG--PTV--LYQKHIASD---ISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~~--~~~--l~~~~~~~~---~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
.........++|+|+|++++++++ +++|.+||+.. ++. +........ .......+.|+| ++.++++
T Consensus 171 ~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p------dg~~lyv 244 (330)
T PRK11028 171 TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP------DGRHLYA 244 (330)
T ss_pred cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC------CCCEEEE
Confidence 111233577999999999988887 89999999973 332 222221101 111233577888 6888988
Q ss_pred EEC-CCcEEEEECCC
Q 003360 415 ATK-DSSVLVLDSDN 428 (826)
Q Consensus 415 gs~-Dg~V~iwd~~t 428 (826)
+.. +++|.+|+...
T Consensus 245 ~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 245 CDRTASLISVFSVSE 259 (330)
T ss_pred ecCCCCeEEEEEEeC
Confidence 854 78999999864
No 199
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=2.8e-10 Score=117.35 Aligned_cols=166 Identities=14% Similarity=0.187 Sum_probs=127.5
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCC----CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS----CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 303 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s----~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~ 303 (826)
.+|.|.|.+ |+.++++|++|+.|-.+++|++. .+...+|.... ..|...|.|++|....+.|.+|..
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~-------~~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME-------HPHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc-------CccccceEEEEEccCCeeEecCCC
Confidence 679999999 99999999999999999999982 22212222122 346689999999999999999999
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec---cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI---NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~---~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
+|+|.+-|+++.+. +....+ .+.|..|..+|..+.+++.+.+|.|.+||.+...-
T Consensus 126 ~~~VI~HDiEt~qs----------------------i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 126 WGTVIKHDIETKQS----------------------IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred cceeEeeeccccee----------------------eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 99999999985432 112222 45799999999999999999999999999987552
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
-...-+.........++.|.|. ...+|++.+.-+-+-+||.+..
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~-----~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPE-----TPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred CCceeeecCCCccceeeeecCC-----CceeEEeccccCCCCceeeccc
Confidence 1112223345667788889885 4667888888899999998843
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.23 E-value=3.4e-08 Score=108.31 Aligned_cols=214 Identities=10% Similarity=0.141 Sum_probs=127.6
Q ss_pred CEEEEEEeeCCCeEEEec--CCcEEEeccCC-Cce---eecccccCCccee-eCCCCCEEE-EEECCCcEEEEeCCC-Cc
Q 003360 194 SITAMKLITGNSFILSSA--DEDYSLLAKSV-PPL---LDFETKLKDGSQS-HSKVKNLFI-TGHSDGAINFWDVSC-PL 264 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~-~~~---~~~~~~h~g~V~~-~s~~~~~l~-Tgs~DGtVriWD~s~-~~ 264 (826)
....++|+|+++.++++. ++.+.+|+... ... .....++.+.-.. ++|++++++ +...+++|.+||+.. ..
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 356789999999999876 78899995532 111 1110111121222 899998775 555679999999943 33
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
+.. .... ...+ ..+.....+.|+|++++|+++.. +++|.+|++....... ..+..+..-+.. .
T Consensus 161 l~~---~~~~-~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~-~~~~~~~~~p~~----------~ 224 (330)
T PRK11028 161 LVA---QEPA-EVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI-ECVQTLDMMPAD----------F 224 (330)
T ss_pred ccc---cCCC-ceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE-EEEEEEecCCCc----------C
Confidence 100 0000 0000 11245678999999999988877 8999999997321100 000100000000 0
Q ss_pred eccCCeEEEEEccCCCEEEEEec-CCeEEEEecCCCe--eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC-CC
Q 003360 344 KINGSIISLNMNRNSQHLAVGSD-QGYVYLLDTEGPT--VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK-DS 419 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~~~~--~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~-Dg 419 (826)
........+.++|+|++++++.. ++.|.+|++.... ......... ......+.|++ |+.+|+++.. ++
T Consensus 225 ~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~------dg~~l~va~~~~~ 296 (330)
T PRK11028 225 SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDH------SGKYLIAAGQKSH 296 (330)
T ss_pred CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECC------CCCEEEEEEccCC
Confidence 01122456899999999998864 7899999995432 111111111 12445678888 6999998775 88
Q ss_pred cEEEEECC--CCce
Q 003360 420 SVLVLDSD--NGNM 431 (826)
Q Consensus 420 ~V~iwd~~--tg~~ 431 (826)
+|.+|+.. +|.+
T Consensus 297 ~v~v~~~~~~~g~l 310 (330)
T PRK11028 297 HISVYEIDGETGLL 310 (330)
T ss_pred cEEEEEEcCCCCcE
Confidence 99999764 5554
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.21 E-value=1.3e-09 Score=110.63 Aligned_cols=208 Identities=17% Similarity=0.153 Sum_probs=156.0
Q ss_pred cCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC----ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CC
Q 003360 191 LDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP----PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SC 262 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~----~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~ 262 (826)
.-.+|+|.+|++|...++.+- ...+.+|..... ...++ ..|...|++ |.|..+.|+||+.|..-.+|.. ++
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 446899999999999999987 667888854332 23333 568888888 9999999999999999999999 77
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
....+...|. .+..++++|.|+|....||+|+....|.||-++..+.= . + .. ..-
T Consensus 88 ~~WkptlvLl--------RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW-----W-V------sK-----hik 142 (361)
T KOG1523|consen 88 GTWKPTLVLL--------RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW-----W-V------SK-----HIK 142 (361)
T ss_pred CeeccceeEE--------EeccceeeEeecCcCceEEeccCccEEEEEEEecccce-----e-h------hh-----hhC
Confidence 7654433332 35578999999999999999999999999998744220 0 0 00 111
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee-------------EEe--eecccCCCCCeeEEEEeecccCCC
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV-------------LYQ--KHIASDISSGIVSLQFETCSLQGF 407 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~-------------l~~--~~~~~~~~~~V~sl~f~~~~~~~~ 407 (826)
.++...|++++|+|++-++|.|+.|+.+||+..-=..+ .|- +.......+.|..+.|++
T Consensus 143 kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~------ 216 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP------ 216 (361)
T ss_pred CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC------
Confidence 23367799999999999999999999999997521100 000 001124557899999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCc
Q 003360 408 EKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 408 d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
++..|+-.+.|++|.+-|.....
T Consensus 217 sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 217 SGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCEeeEecCCCceEEeecCCCc
Confidence 59999999999999999988664
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=3.7e-09 Score=120.00 Aligned_cols=203 Identities=9% Similarity=0.055 Sum_probs=132.5
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-C---CcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEE-CCCcEEEE-
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-D---EDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGH-SDGAINFW- 258 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d---~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs-~DGtVriW- 258 (826)
.+..|...+...+|+|+++.++..+ + ..+.+|+........+ ....+...+ |+|+|+.|+.++ .||.++||
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 3566778899999999999998865 2 2588887544322222 111222223 999999887764 68887776
Q ss_pred -eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 259 -DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 259 -D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|+.+..... + ..+...+....|+|+++.|+.+ ..+|...||++..... ...
T Consensus 277 ~d~~~~~~~~---l--------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~---------------~~~- 329 (429)
T PRK01742 277 MGANGGTPSQ---L--------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG---------------GAS- 329 (429)
T ss_pred EECCCCCeEe---e--------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC---------------CeE-
Confidence 444443211 2 2344567889999999977655 4678999999863211 010
Q ss_pred EEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 337 IHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
. ..+.+ .+.+|+|+|++|++++.++ +.+||+.++....... .. ...+..|+| |+.+|+.++
T Consensus 330 ---~--l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~~--~~~~~~~sP------dG~~i~~~s 390 (429)
T PRK01742 330 ---L--VGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS---TF--LDESPSISP------NGIMIIYSS 390 (429)
T ss_pred ---E--ecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC---CC--CCCCceECC------CCCEEEEEE
Confidence 1 11222 4578999999999888776 4569998886542111 11 224567888 699999999
Q ss_pred CCCcEEEEEC--CCCceEEeee
Q 003360 417 KDSSVLVLDS--DNGNMLSTNL 436 (826)
Q Consensus 417 ~Dg~V~iwd~--~tg~~i~~~~ 436 (826)
.++.+.+|.+ .+|+.+..+.
T Consensus 391 ~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 391 TQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred cCCCceEEEEEECCCCceEEcc
Confidence 9998887775 3577766653
No 203
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=3.6e-09 Score=114.57 Aligned_cols=284 Identities=14% Similarity=0.152 Sum_probs=173.6
Q ss_pred cCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee---eCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 191 LDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS---HSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~---~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
|...-+.+..+|||+++++.+ .-.|++|+... ..+.|+......+.. .+.|-..++--..|.+|.+....+..
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan-LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h- 127 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN-LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH- 127 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEccc-ceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee-
Confidence 344567899999999999876 55788886543 233342333333333 45555556666788888877654433
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
+.++-+ ..-..++++.- ..++++| ....|.=+++..+... ....
T Consensus 128 ---y~~RIP---------~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL----------------------~P~~ 172 (703)
T KOG2321|consen 128 ---YRTRIP---------KFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFL----------------------NPFE 172 (703)
T ss_pred ---eeeecC---------cCCccccccCCCccEEEee-cCcceEEEEccccccc----------------------cccc
Confidence 222210 12234555543 3444444 4445655666644331 1111
Q ss_pred c-cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC---CC-----CCeeEEEEeecccCCCCCcEEEEE
Q 003360 345 I-NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD---IS-----SGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 345 ~-~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~---~~-----~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
. .+.+.++.+++...+|++|+.+|.|-.||.+....+-+..+... +. ..|+++.|.. |+-.+++|
T Consensus 173 ~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d------~gL~~aVG 246 (703)
T KOG2321|consen 173 TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD------DGLHVAVG 246 (703)
T ss_pred cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC------CceeEEee
Confidence 1 36799999999999999999999999999998876644433222 22 3499999997 58999999
Q ss_pred ECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEE
Q 003360 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACA 495 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv 495 (826)
+++|.|.|||+++.+.+..- .......+..+.+++. ..+.-|+.+-...++|
T Consensus 247 ts~G~v~iyDLRa~~pl~~k--dh~~e~pi~~l~~~~~--------------------------~~q~~v~S~Dk~~~ki 298 (703)
T KOG2321|consen 247 TSTGSVLIYDLRASKPLLVK--DHGYELPIKKLDWQDT--------------------------DQQNKVVSMDKRILKI 298 (703)
T ss_pred ccCCcEEEEEcccCCceeec--ccCCccceeeeccccc--------------------------CCCceEEecchHHhhh
Confidence 99999999999988766431 1222233444444431 1234566666678999
Q ss_pred EeccccccccceeeeeeecC--CCCceeeEeeeeCCceEEEEEEeeceEEEeccCCcccccc
Q 003360 496 YSLSHAVQGVKKVLYKKKFH--SSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKE 555 (826)
Q Consensus 496 ~sl~~~~~g~~k~~~k~~~~--~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~ 555 (826)
|+-. ..+.+..+--. ....|.. +..-.+.+...++.|..+-+|+|-+.-.
T Consensus 299 Wd~~-----~Gk~~asiEpt~~lND~C~~-----p~sGm~f~Ane~~~m~~yyiP~LGPaPr 350 (703)
T KOG2321|consen 299 WDEC-----TGKPMASIEPTSDLNDFCFV-----PGSGMFFTANESSKMHTYYIPSLGPAPR 350 (703)
T ss_pred cccc-----cCCceeeccccCCcCceeee-----cCCceEEEecCCCcceeEEccccCCCch
Confidence 9876 33333222100 0112222 3333444556778999999999877643
No 204
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.17 E-value=1.8e-10 Score=121.65 Aligned_cols=265 Identities=12% Similarity=0.185 Sum_probs=172.1
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
....|+-++.||+-- .+-.++|.+. .+...+...+.+.|+.+| ++..+|++....-+++||..
T Consensus 137 ytrnGrhlllgGrKG------HlAa~Dw~t~--~L~~Ei~v~Etv~Dv~~L---------Hneq~~AVAQK~y~yvYD~~ 199 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKG------HLAAFDWVTK--KLHFEINVMETVRDVTFL---------HNEQFFAVAQKKYVYVYDNN 199 (545)
T ss_pred ecCCccEEEecCCcc------ceeeeecccc--eeeeeeehhhhhhhhhhh---------cchHHHHhhhhceEEEecCC
Confidence 445677777776532 3677788774 334566667778887665 23445777788888999876
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eC
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HS 240 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s 240 (826)
.++- ..---...|..+.|-|..-.|++++ .|.++-.+...+.+..-...-.|.+.. -.
T Consensus 200 GtEl-------------------HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 200 GTEL-------------------HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred CcEE-------------------eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 6321 0111224677888888888888888 666655554443332211111333333 67
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
|...++-+||.+|+|-+|..+.++. +- .+-.|.++|.+|++.++|+++|+.+.|..|+|||++.-..
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skeP--Lv--------KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--- 327 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEP--LV--------KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--- 327 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcch--HH--------HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc---
Confidence 8888999999999999999955542 11 1235889999999999999999999999999999983221
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEe-cCCCe-eEEeeecccCCCCCeeEEE
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD-TEGPT-VLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD-~~~~~-~l~~~~~~~~~~~~V~sl~ 398 (826)
+......-+...+++|.-| .||.|..+ .|.||. ...+. ........+....+|..+.
T Consensus 328 -------------------l~t~~tp~~a~~ls~Sqkg-lLA~~~G~-~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~ 386 (545)
T KOG1272|consen 328 -------------------LHTYRTPHPASNLSLSQKG-LLALSYGD-HVQIWKDALKGSGHGETPYMNHRCGGPVEDLR 386 (545)
T ss_pred -------------------cceeecCCCcccccccccc-ceeeecCC-eeeeehhhhcCCCCCCcchhhhccCcccccce
Confidence 1111124467889999887 46666555 688994 32211 2111122233456899999
Q ss_pred EeecccCCCCCcEEEEEECCCcEEEE
Q 003360 399 FETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
|.|. .+.|-+|..-|.-.++
T Consensus 387 FcP~------EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 387 FCPY------EDVLGIGHAGGITSIL 406 (545)
T ss_pred eccH------HHeeeccccCCceeEe
Confidence 9997 7778777766643333
No 205
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=1.1e-09 Score=113.88 Aligned_cols=202 Identities=14% Similarity=0.200 Sum_probs=144.8
Q ss_pred CCCeEEEecCCcEEEeccCCCceee--c-ccccCCccee---eCCCCCEEEEEECC--CcEEEEeCCCCceeeeeecccc
Q 003360 203 GNSFILSSADEDYSLLAKSVPPLLD--F-ETKLKDGSQS---HSKVKNLFITGHSD--GAINFWDVSCPLFLLILSLKQQ 274 (826)
Q Consensus 203 ~~~~l~~~~d~~i~~w~~~~~~~~~--~-~~~h~g~V~~---~s~~~~~l~Tgs~D--GtVriWD~s~~~~~~i~~l~~~ 274 (826)
+|..+..-++|.+.+|..+.+.... . .+.--.++.. ......++++|+.. ..++|||+.... +++.-++-
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNv 192 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--QIWSAKNV 192 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccce--eeeeccCC
Confidence 3333333448889999655322111 0 1222233433 33455688889999 899999994432 34554433
Q ss_pred cccccccC-CCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEE
Q 003360 275 SEKDFSLS-GIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIIS 351 (826)
Q Consensus 275 ~~~~~~~h-~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~ 351 (826)
....+... ...++.+.|-+. ...||+++.-+.||+||.+.+.. ++ ..+-....+|++
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR----------------PV----~~fd~~E~~is~ 252 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR----------------PV----AQFDFLENPISS 252 (412)
T ss_pred CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc----------------ce----eEeccccCccee
Confidence 22222111 156788999888 88999999999999999984433 21 444455778999
Q ss_pred EEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCce
Q 003360 352 LNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 352 l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
+...|.|+++.+|..-|.+..||++++.++ .....+..+.|.++...|. .++|++|+-|..|+|+|..+.++
T Consensus 253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~kg~tGsirsih~hp~------~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLKGITGSIRSIHCHPT------HPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred eeecCCCcEEEEecccchhheecccCceee--ccccCCccCCcceEEEcCC------CceEEeeccceeEEEeecccchh
Confidence 999999999999999999999999999988 3334677889999999984 79999999999999999998776
Q ss_pred EEe
Q 003360 432 LST 434 (826)
Q Consensus 432 i~~ 434 (826)
+..
T Consensus 325 l~k 327 (412)
T KOG3881|consen 325 LHK 327 (412)
T ss_pred hhh
Confidence 654
No 206
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.15 E-value=6.1e-10 Score=121.14 Aligned_cols=163 Identities=16% Similarity=0.192 Sum_probs=119.2
Q ss_pred eCCCCCEEEE--EECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCC
Q 003360 239 HSKVKNLFIT--GHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 ~s~~~~~l~T--gs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
|+.+....++ .+.-|.|-||++..+-. |...... --..+..|+.+.|.| |...||+++.||.|+||.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGr-----LPDgv~p-~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~ 660 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGR-----LPDGVMP-GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN 660 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCC-----CCccccc-ccccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence 6666666654 35568999999944332 1111000 112347899999999 5678999999999999999866
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCe
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGI 394 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V 394 (826)
.... + ..+.- -....|...|++|.|+|- ...||+++.|-+|++||+++.+....+ .+|.+.|
T Consensus 661 gl~e-~---------~~tPe----~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l---~gHtdqI 723 (1012)
T KOG1445|consen 661 GLPE-N---------EMTPE----KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL---VGHTDQI 723 (1012)
T ss_pred CCCc-c---------cCCcc----eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee---ccCcCce
Confidence 3211 0 00010 122234567999999983 457999999999999999998766444 4899999
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
-.++|+| ||+.+++.+.||+|++|+.++++
T Consensus 724 f~~AWSp------dGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 724 FGIAWSP------DGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred eEEEECC------CCcceeeeecCceEEEeCCCCCC
Confidence 9999999 59999999999999999998765
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.12 E-value=1.7e-09 Score=116.26 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=58.4
Q ss_pred CCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 003360 233 KDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIF 310 (826)
Q Consensus 233 ~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iw 310 (826)
+++|.. |++||++||+.++||.+||+|....++. ..++ ..-+...||+|+||++++++|++|..|.||
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl--g~mk--------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL--GVMK--------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHH--HHHH--------hhccceEEEEEcCCccEEEecCCcceEEEE
Confidence 345555 9999999999999999999999665531 1111 112688999999999999999999999999
Q ss_pred EeCCC
Q 003360 311 KLKYE 315 (826)
Q Consensus 311 d~~~~ 315 (826)
.+...
T Consensus 360 Sf~er 364 (636)
T KOG2394|consen 360 SFEER 364 (636)
T ss_pred Eeccc
Confidence 99744
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.07 E-value=1.1e-08 Score=103.96 Aligned_cols=231 Identities=12% Similarity=0.118 Sum_probs=153.6
Q ss_pred CCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc
Q 003360 142 KPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK 220 (826)
Q Consensus 142 ~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~ 220 (826)
..+...+.+..+..++++|.-.. .+ ..+...++..|+..|+++.++|..+.|++++ |.--.+|..
T Consensus 19 n~drt~iAv~~~~~evhiy~~~~-------~~-------~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 19 NSDRTQIAVSPNNHEVHIYSMLG-------AD-------LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCCCceEEeccCCceEEEEEecC-------CC-------CceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34444556666777998886544 00 1223445789999999999999999999999 888888854
Q ss_pred --CCCceeec-ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCc-eeeeeecccccccccccCCCCeEEEEEeCC
Q 003360 221 --SVPPLLDF-ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPL-FLLILSLKQQSEKDFSLSGIPLTALYYDGT 294 (826)
Q Consensus 221 --~~~~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~-~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~ 294 (826)
+..+..++ ...|.+.+.+ |+|.++.+|+|+.-..|-||-+.... .=.-+.++ ..+...|++++|+|+
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik-------kPirStv~sldWhpn 157 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK-------KPIRSTVTSLDWHPN 157 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC-------CccccceeeeeccCC
Confidence 22222222 2457888888 99999999999999999999884332 10001122 245578999999999
Q ss_pred CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE--EEEeeccCCeEEEEEccCCCEEEEEecCCeEEE
Q 003360 295 SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS--VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYL 372 (826)
Q Consensus 295 ~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~--~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~v 372 (826)
+-+|++|+.|+..|+|..--...+... +.++-+.....-. .......+.|..+.|+|+|..|+-.+.|++|.+
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vdekp-----ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVDEKP-----APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSF 232 (361)
T ss_pred cceecccccCcceeEEEEeeeccccCC-----CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEE
Confidence 999999999999999975321110000 0000010000000 111133567999999999999999999999999
Q ss_pred EecCCCee-EEeeecccCCCCCeeEEEEee
Q 003360 373 LDTEGPTV-LYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 373 wD~~~~~~-l~~~~~~~~~~~~V~sl~f~~ 401 (826)
-|...+.. +.... ...-|..++.|..
T Consensus 233 ~da~~p~~~v~~~~---~~~lP~ls~~~is 259 (361)
T KOG1523|consen 233 VDAAGPSERVQSVA---TAQLPLLSVSWIS 259 (361)
T ss_pred eecCCCchhccchh---hccCCceeeEeec
Confidence 99988752 21111 2225777787776
No 209
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.06 E-value=9.5e-10 Score=108.67 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=102.9
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC--
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-- 222 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-- 222 (826)
..++++-.+|++.+||...- ...++.+.. .. .......|..+|..+.|.+....-+.++ +..+..|+...
T Consensus 166 ~lllaGyEsghvv~wd~S~~-~~~~~~~~~----~k--v~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTG-DKIIQLPQS----SK--VESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred EEEEEeccCCeEEEEEccCC-ceeeccccc----cc--cccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 34566778999999998762 111122211 11 1122357899999999998888777877 66666773221
Q ss_pred --Cceeec-ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE
Q 003360 223 --PPLLDF-ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 297 (826)
Q Consensus 223 --~~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~ 297 (826)
-++... ... .-||.. .-||++++||++.||.||||...... ++..|+ .|.+.|++++|+|+..+
T Consensus 239 gslq~~~e~~lk-npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~--pLAVLk--------yHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 239 GSLQIRKEITLK-NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN--PLAVLK--------YHSAGVNAVAFSPDCEL 307 (323)
T ss_pred CcccccceEEec-CCCccceEEccCCcEEeecccCCcEEEEEeccCC--chhhhh--------hhhcceeEEEeCCCCch
Confidence 111111 111 223433 88999999999999999999983322 233344 58899999999999999
Q ss_pred EEEEeCCCcEEEEEe
Q 003360 298 LVSGDQSGMVRIFKL 312 (826)
Q Consensus 298 Lasgs~dg~V~iwd~ 312 (826)
+|.++.|+.|.+|++
T Consensus 308 mAaaskD~rISLWkL 322 (323)
T KOG0322|consen 308 MAAASKDARISLWKL 322 (323)
T ss_pred hhhccCCceEEeeec
Confidence 999999999999996
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1.2e-09 Score=117.53 Aligned_cols=228 Identities=11% Similarity=0.115 Sum_probs=148.3
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc-CCCceeecccccCCccee--eCC--CCCEEEEEECCCcEEEEeCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK-SVPPLLDFETKLKDGSQS--HSK--VKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~-~~~~~~~~~~~h~g~V~~--~s~--~~~~l~Tgs~DGtVriWD~s 261 (826)
|.+|.+-|.|+.|+.+|.+|++|+ |-.+.+|+. ....+..+.++|++.|.+ |-| +.++++||..|..|+++|++
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 689999999999999999999999 778999964 344566667899999999 655 45699999999999999994
Q ss_pred C-CceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 262 C-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 262 ~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
. .....-.-.. ....-+.-|...|..|+-+|++ ..+.++++||+++-||++....-. +++.++..-
T Consensus 126 ~~~~~~~d~~~~-~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~----------p~~~~~~~l- 193 (758)
T KOG1310|consen 126 SSKEGGMDHGME-ETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN----------PDEDCPSIL- 193 (758)
T ss_pred cccccccccCcc-chhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC----------ccccccHHH-
Confidence 2 1100000000 0011123466788999999998 789999999999999999542110 111110000
Q ss_pred EEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCe------------------eEEeeecccCCC--------C
Q 003360 340 VKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPT------------------VLYQKHIASDIS--------S 392 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~------------------~l~~~~~~~~~~--------~ 392 (826)
+.....--...|+.++|. ..+||+|+.|-.+++||.+... |+..+. .+|. .
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~--p~hlkn~~gn~~~ 271 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS--PGHLKNSQGNLDR 271 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec--CccccCccccccc
Confidence 000001123678888885 4579999999999999954211 110000 0111 1
Q ss_pred C---eeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 393 G---IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 393 ~---V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
. .+-+.|+| +|.-|++.-..-.|+++|+..++-...+
T Consensus 272 ~~~~~t~vtfnp------NGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 272 YITCCTYVTFNP------NGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ceeeeEEEEECC------CCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 2 34455666 3655665555567999999877754443
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1.7e-09 Score=116.33 Aligned_cols=172 Identities=14% Similarity=0.194 Sum_probs=123.5
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCC
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQS 304 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~d 304 (826)
.+|+|-|.| |+.+|.+|++|+.|-.+.|||.. .+. +..+. .+|...|.++.|-|. .+++++|..|
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl---lhsI~-------TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL---LHSIS-------TGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcce---eeeee-------cccccceeEEeeeccCCCeEEEeccCc
Confidence 789999999 99999999999999999999994 333 23344 578899999999995 4799999999
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeEEe
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
..|++||+........+ ++.... ..-..-|...|..|+-.|++ ..+-++++||+|+-+|++.+...-.
T Consensus 117 k~i~lfdl~~~~~~~~d---------~~~~~~--~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMD---------HGMEET--TRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred ceEEEEecccccccccc---------cCccch--hhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 99999999843211000 110000 01123345668888888988 6788999999999999997643200
Q ss_pred -eec------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 384 -KHI------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 384 -~~~------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
..+ ....--...++..+|. +..+|++|++|--.++||.+
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~-----rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPS-----RPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCC-----CCceEEecCCCchhhhhhhh
Confidence 000 0011123456677775 57899999999999999954
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.05 E-value=5e-10 Score=118.40 Aligned_cols=196 Identities=14% Similarity=0.157 Sum_probs=149.8
Q ss_pred EEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecc
Q 003360 196 TAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK 272 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~ 272 (826)
..+.|+.+|++++.++ .|.+..++.....+. ++......|.+ |-.+.+++|++ +..-+.|||-.+.++-+ ++
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~-~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHC---lk 207 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH-FEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHC---LK 207 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceee-eeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEee---hh
Confidence 4578999999999998 888888765543322 22233344444 66666777765 55689999998777533 33
Q ss_pred cccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEE
Q 003360 273 QQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISL 352 (826)
Q Consensus 273 ~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l 352 (826)
....|..+.|-|.--+|++++..|.++.-|+..+... ..+..-.+.+..|
T Consensus 208 ---------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV---------------------a~~~t~~G~~~vm 257 (545)
T KOG1272|consen 208 ---------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV---------------------ASIRTGAGRTDVM 257 (545)
T ss_pred ---------hcCchhhhcccchhheeeecccCCceEEEeechhhhh---------------------HHHHccCCccchh
Confidence 1258999999999999999999999999999866432 1111225678888
Q ss_pred EEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 353 NMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 353 ~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
+-+|-...+-+|...|+|.+|.....+.+..+- .|.++|.+|++.+ +|.++++.+.|..++|||+++-..+
T Consensus 258 ~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL---cH~g~V~siAv~~------~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 258 KQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL---CHRGPVSSIAVDR------GGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred hcCCccceEEEcCCCceEEecCCCCcchHHHHH---hcCCCcceEEECC------CCcEEeecccccceeEeeecccccc
Confidence 999988889999999999999999888773332 5888999999999 5999999999999999999977666
Q ss_pred Eee
Q 003360 433 STN 435 (826)
Q Consensus 433 ~~~ 435 (826)
.++
T Consensus 329 ~t~ 331 (545)
T KOG1272|consen 329 HTY 331 (545)
T ss_pred cee
Confidence 554
No 213
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.05 E-value=5.3e-08 Score=100.90 Aligned_cols=151 Identities=17% Similarity=0.252 Sum_probs=114.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE--eCCCcEEEEEeCCCCCcc
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG--DQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg--s~dg~V~iwd~~~~~~~~ 319 (826)
+.+.|+++=++. |.|||+..-. ++.++.. ...+...+.++++++.+.+||-- ...|.|.|||..+-.
T Consensus 96 Nr~RLvV~Lee~-IyIydI~~Mk--lLhTI~t-----~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~--- 164 (391)
T KOG2110|consen 96 NRKRLVVCLEES-IYIYDIKDMK--LLHTIET-----TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ--- 164 (391)
T ss_pred ccceEEEEEccc-EEEEecccce--eehhhhc-----cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce---
Confidence 445677766654 9999995544 2344431 12344678888888888888863 346899999987321
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCe-EEEEecCCCeeEEeeecccCCCCCeeEEE
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGY-VYLLDTEGPTVLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~-V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 398 (826)
++ .....|.+++-||+|+++|.+||++|+.|+ |||+++..++.++.++-.. ....|.+++
T Consensus 165 --------------~v----~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~ 225 (391)
T KOG2110|consen 165 --------------PV----NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLS 225 (391)
T ss_pred --------------ee----eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-eeeEEEEEE
Confidence 11 334478999999999999999999999998 6999999999998876321 255688999
Q ss_pred EeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 399 FETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
|++ |+++|.+.++.++|+||.+..
T Consensus 226 Fs~------ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 226 FSP------DSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ECC------CCCeEEEecCCCeEEEEEecc
Confidence 999 699999999999999999874
No 214
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.03 E-value=2.3e-08 Score=100.35 Aligned_cols=116 Identities=11% Similarity=0.172 Sum_probs=89.7
Q ss_pred CCeEEEEEeCCCCEEEEE--eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE
Q 003360 284 IPLTALYYDGTSRVLVSG--DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL 361 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasg--s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 361 (826)
.+|.+++|+|++..||+. ..++.|.+||++... +.. ....++..+.|||+|++|
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~-----------------------i~~-~~~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKK-----------------------IFS-FGTQPRNTISWSPDGRFL 115 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccE-----------------------eEe-ecCCCceEEEECCCCCEE
Confidence 579999999999987654 467799999996111 111 125678899999999999
Q ss_pred EEEec---CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC------CCcEEEEECCCCceE
Q 003360 362 AVGSD---QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK------DSSVLVLDSDNGNML 432 (826)
Q Consensus 362 asGs~---dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~------Dg~V~iwd~~tg~~i 432 (826)
++|+. .|.|.+||.++.+.+.... ...++.++|+| ||+++++++. |..++||+.. |+.+
T Consensus 116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~-----~~~~t~~~WsP------dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 116 VLAGFGNLNGDLEFWDVRKKKKISTFE-----HSDATDVEWSP------DGRYLATATTSPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred EEEEccCCCcEEEEEECCCCEEeeccc-----cCcEEEEEEcC------CCCEEEEEEeccceeccccEEEEEec-CeEe
Confidence 99864 4779999999888884432 23478999999 6999998875 7789999986 8877
Q ss_pred Eee
Q 003360 433 STN 435 (826)
Q Consensus 433 ~~~ 435 (826)
...
T Consensus 184 ~~~ 186 (194)
T PF08662_consen 184 YKK 186 (194)
T ss_pred Eec
Confidence 653
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=7.8e-08 Score=104.47 Aligned_cols=165 Identities=15% Similarity=0.236 Sum_probs=113.9
Q ss_pred CCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 241 KVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
+.-.+++.|+.+ .|.=.++ .+..+.+ +......++++..++...+|++|+.+|.|..||.+......
T Consensus 144 ~scDly~~gsg~-evYRlNLEqGrfL~P-----------~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 144 PSCDLYLVGSGS-EVYRLNLEQGRFLNP-----------FETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred CCccEEEeecCc-ceEEEEccccccccc-----------cccccccceeeeecCccceEEecccCceEEEecchhhhhhe
Confidence 344566665544 5666677 5555322 23344789999999999999999999999999998653321
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
...+. .+-+. .........|+++.|+.+|-.+++|+.+|.|.|||++..+.++... ++...+|..+.|
T Consensus 212 ~l~~~---~~v~s-------~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd--h~~e~pi~~l~~ 279 (703)
T KOG2321|consen 212 TLDAA---SSVNS-------HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD--HGYELPIKKLDW 279 (703)
T ss_pred eeecc---cccCC-------CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc--cCCccceeeecc
Confidence 00000 00000 0000112349999999999999999999999999999999885444 567789999999
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.+. +++--++......++|||..+|+....
T Consensus 280 ~~~-----~~q~~v~S~Dk~~~kiWd~~~Gk~~as 309 (703)
T KOG2321|consen 280 QDT-----DQQNKVVSMDKRILKIWDECTGKPMAS 309 (703)
T ss_pred ccc-----CCCceEEecchHHhhhcccccCCceee
Confidence 874 233333334455789999999998776
No 216
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.01 E-value=1e-09 Score=123.18 Aligned_cols=157 Identities=12% Similarity=0.206 Sum_probs=116.6
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMV 307 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V 307 (826)
.+|...|.| |...|.+++||+.|..|+||....... ...+.+|...|+.++.+.+..++++++.|..|
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~----------lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC----------LASCRGHSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhh----------hccCCCCccccchhccchhhhhhhhcccCceE
Confidence 579999999 999999999999999999999843331 22345899999999999999999999999999
Q ss_pred EEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 308 RIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
++|.+..+. .+ .....|.+.||+|+|+|-- +.+.||++++||.+--..+|.-...
T Consensus 257 rvWrl~~~~-----------------pv----svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 257 RVWRLPDGA-----------------PV----SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred EEEecCCCc-----------------hH----HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCC
Confidence 999998432 21 2345678999999999864 6789999999999822222221111
Q ss_pred -cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 388 -SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 388 -~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
.....-+.++.|.. .+.-..+|+.|+.-..|...
T Consensus 312 ~~~~~~~~~s~~~~~------~~~~f~Tgs~d~ea~n~e~~ 346 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFEN------NGDRFLTGSRDGEARNHEFE 346 (1113)
T ss_pred Ccccccceeeeeccc------cccccccccCCcccccchhh
Confidence 11123455566655 36677888888877666654
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.00 E-value=2e-08 Score=100.80 Aligned_cols=151 Identities=16% Similarity=0.299 Sum_probs=99.6
Q ss_pred EEEEeeCCCeEEEec----CC-------cEEEe--ccCCCceeecccccCCccee--eCCCCCEEEE--EECCCcEEEEe
Q 003360 197 AMKLITGNSFILSSA----DE-------DYSLL--AKSVPPLLDFETKLKDGSQS--HSKVKNLFIT--GHSDGAINFWD 259 (826)
Q Consensus 197 ~~~fs~~~~~l~~~~----d~-------~i~~w--~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~T--gs~DGtVriWD 259 (826)
.+.|++.|.+|+.-. |. ...+| +..............+.|.+ |+|+++.+++ |..++.|.|||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 345677777766521 11 13333 22222333333334556877 9999997654 45678999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
..+.. +..+ +...+..|.|+|+|++|++|+. .|.|.+||.+....
T Consensus 90 ~~~~~---i~~~----------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~------------------- 137 (194)
T PF08662_consen 90 VKGKK---IFSF----------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK------------------- 137 (194)
T ss_pred CcccE---eEee----------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-------------------
Confidence 96443 2222 2357789999999999999875 46799999983221
Q ss_pred EEEEEEeeccCCeEEEEEccCCCEEEEEec------CCeEEEEecCCCeeEEee
Q 003360 337 IHSVKVMKINGSIISLNMNRNSQHLAVGSD------QGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g~~lasGs~------dG~V~vwD~~~~~~l~~~ 384 (826)
+.... ...++.++|+|+|++++++.. |..++||+. +|+.++..
T Consensus 138 ---i~~~~-~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 138 ---ISTFE-HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred ---eeccc-cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 22222 334789999999999998874 678899999 46666443
No 218
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=7.5e-09 Score=108.94 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=104.8
Q ss_pred cceeeCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeC
Q 003360 235 GSQSHSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 235 ~V~~~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~ 313 (826)
.+.+|..+|..|+||+.||++|||+. +.... +. ...|...|.+|.|+||+..|++-+.| ..+||+.+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-----l~------e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-----LE------EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh-----hh------hHhhcCccccceeCCCCcEEEEecCC-ceEEEEec
Confidence 44458999999999999999999997 33331 11 23577899999999999999999999 89999999
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-----CEEEEEecCCeEEEEecCCC---eeEEeee
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-----QHLAVGSDQGYVYLLDTEGP---TVLYQKH 385 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-----~~lasGs~dG~V~vwD~~~~---~~l~~~~ 385 (826)
.+........ +++ +-....+.|+.|+ ...+.-..-+.|+.||+... ..+...+
T Consensus 216 ~g~~~a~~t~----~~k---------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~ 276 (398)
T KOG0771|consen 216 TGAALARKTP----FSK---------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK 276 (398)
T ss_pred cCchhhhcCC----ccc---------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh
Confidence 7622110000 000 1112334444443 22233333445555554321 1221111
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
. ......|++++.+. ||.+++.|+.||.|.|++..+-+++.-
T Consensus 277 ~-~~~~~siSsl~VS~------dGkf~AlGT~dGsVai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 277 K-IKRFKSISSLAVSD------DGKFLALGTMDGSVAIYDAKSLQRLQY 318 (398)
T ss_pred h-hhccCcceeEEEcC------CCcEEEEeccCCcEEEEEeceeeeeEe
Confidence 1 12234788999998 699999999999999999987666544
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.98 E-value=1.4e-07 Score=96.10 Aligned_cols=210 Identities=14% Similarity=0.210 Sum_probs=134.3
Q ss_pred EEEEEEeeCCCeEEEecCCcEEEeccCCCceee-c-ccccCCccee---eCCCCCEEEEEECC------CcEEEEeCCCC
Q 003360 195 ITAMKLITGNSFILSSADEDYSLLAKSVPPLLD-F-ETKLKDGSQS---HSKVKNLFITGHSD------GAINFWDVSCP 263 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~-~-~~~h~g~V~~---~s~~~~~l~Tgs~D------GtVriWD~s~~ 263 (826)
...++|+.|...++.|.|.-+++|+-.- +.. . ...+.+|+.- .....-+.++|+.+ ..|-|||-...
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~P--~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCDP--FKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecCc--hhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 4448999999999999877788886431 111 1 1223444221 12222233445443 57999995222
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC--------ccccceEE---------E
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH--------AIENSFLS---------F 326 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~--------~~~~~~~~---------i 326 (826)
. ++.++. -..+|.+|.+.++ .+++. -...|.||.+..+.. ..++.+-. +
T Consensus 86 ~--~i~el~---------f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 86 R--CIIELS---------FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred c--EEEEEE---------eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 2 223333 1268999999876 34444 456799999885511 11111111 1
Q ss_pred ee--cCCCCeEEEEE---------EEEeeccCCeEEEEEccCCCEEEEEecCCe-EEEEecCCCeeEEeeecccCCCCCe
Q 003360 327 TG--SKKGNSHIIHS---------VKVMKINGSIISLNMNRNSQHLAVGSDQGY-VYLLDTEGPTVLYQKHIASDISSGI 394 (826)
Q Consensus 327 ~~--s~~~~~~~~~~---------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~-V~vwD~~~~~~l~~~~~~~~~~~~V 394 (826)
.+ .+.| ++.+.. .....|.+.|.|++.+-+|.+||++|..|+ |||||..+++.++.++- .-....|
T Consensus 152 afPg~k~G-qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR-G~d~A~i 229 (346)
T KOG2111|consen 152 AFPGFKTG-QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR-GVDRADI 229 (346)
T ss_pred EcCCCccc-eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec-CCchheE
Confidence 11 1122 111111 223456888999999999999999999998 79999999999976652 1235679
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
.+++|+| ++.+|+++|.-|+|.|+.++.
T Consensus 230 y~iaFSp------~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 230 YCIAFSP------NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEeCC------CccEEEEEcCCCeEEEEEeec
Confidence 9999999 599999999999999999874
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=3.8e-07 Score=103.52 Aligned_cols=204 Identities=7% Similarity=0.044 Sum_probs=125.1
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec----CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEE-ECCCc--EEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA----DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITG-HSDGA--INFW 258 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~----d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tg-s~DGt--VriW 258 (826)
+..+...+...+|+|||+.++..+ +..+.+|+........+ ....+.+.+ |+|+|+.|+.. ..+|. |.+|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 345666889999999999988643 23466665443332222 122233333 99999977754 55654 8888
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
|+.+..... +. .+...+....|+|+++.|+..+. +|...||.+.... +..
T Consensus 273 d~~tg~~~~---lt--------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~---------------g~~--- 323 (429)
T PRK03629 273 DLASGQIRQ---VT--------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING---------------GAP--- 323 (429)
T ss_pred ECCCCCEEE---cc--------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC---------------CCe---
Confidence 985544211 21 12245678999999998876665 4566677554211 111
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecC---CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQ---GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~d---G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
.+.......+.+..|+|+|++++..+.+ ..|.+||+.++...... ... ...+..|+| |+..|+.
T Consensus 324 --~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt---~~~--~~~~p~~Sp------DG~~i~~ 390 (429)
T PRK03629 324 --QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT---DTF--LDETPSIAP------NGTMVIY 390 (429)
T ss_pred --EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC---CCC--CCCCceECC------CCCEEEE
Confidence 1111122345678999999999876643 35889999887644211 111 123466777 7999998
Q ss_pred EECCCc---EEEEECCCCceEEee
Q 003360 415 ATKDSS---VLVLDSDNGNMLSTN 435 (826)
Q Consensus 415 gs~Dg~---V~iwd~~tg~~i~~~ 435 (826)
++.++. +.++++. |+....+
T Consensus 391 ~s~~~~~~~l~~~~~~-G~~~~~l 413 (429)
T PRK03629 391 SSSQGMGSVLNLVSTD-GRFKARL 413 (429)
T ss_pred EEcCCCceEEEEEECC-CCCeEEC
Confidence 888764 6777875 6555444
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=2.8e-07 Score=105.06 Aligned_cols=199 Identities=11% Similarity=0.004 Sum_probs=124.8
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec----CCcEEEeccCCCceeecccccCCccee--eCCCCCEEE-EEECCCc--EEE
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA----DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI-TGHSDGA--INF 257 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~----d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DGt--Vri 257 (826)
.+..|...+...+|+|||+.++..+ +..+.+|+........+ ..+.+.+.+ |+|+|+.|+ +.+.+|. |.+
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe-ecCCCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 3567778899999999999988765 34577787654443333 334555545 999998664 6677776 556
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCC--cEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSG--MVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg--~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
||+.+..... +. .+....+..+|+|+++.|+..+ .+| .|.+||+..+..
T Consensus 275 ~d~~~~~~~~---Lt--------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~----------------- 326 (435)
T PRK05137 275 MDLRSGTTTR---LT--------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP----------------- 326 (435)
T ss_pred EECCCCceEE---cc--------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-----------------
Confidence 6775544211 21 2334466789999999888766 344 455556542211
Q ss_pred EEEEEEEEeeccCCeEEEEEccCCCEEEEEecC---CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcE
Q 003360 335 HIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ---GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF 411 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d---G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~ 411 (826)
.+.....+.+....|+|+|+.|+....+ ..|.+||+.++.... .. .. ..+....|+| |++.
T Consensus 327 -----~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~-lt--~~--~~~~~p~~sp------DG~~ 390 (435)
T PRK05137 327 -----RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI-LT--SG--FLVEGPTWAP------NGRV 390 (435)
T ss_pred -----EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe-cc--CC--CCCCCCeECC------CCCE
Confidence 1111123456778899999999887653 368889986554321 11 11 2356678888 6887
Q ss_pred EEEEECC------CcEEEEECCCCc
Q 003360 412 LVIATKD------SSVLVLDSDNGN 430 (826)
Q Consensus 412 l~sgs~D------g~V~iwd~~tg~ 430 (826)
|+..+.+ ..++++|+.++.
T Consensus 391 i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 391 IMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EEEEEccCCCCCcceEEEEECCCCc
Confidence 7665543 257888876443
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=6.4e-07 Score=92.60 Aligned_cols=224 Identities=13% Similarity=0.076 Sum_probs=136.8
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
-++| -+|+.+.+.+||..+++++ |..|.+|+........+.+.--||+.- |+||+.+|.++.-|+..++|+-...
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~ 270 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS 270 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc
Confidence 3555 6899999999999999988 778999987765555554445667755 9999999999999999999965211
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc----ccceEEEeecCCCCeEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI----ENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~----~~~~~~i~~s~~~~~~~~~~ 339 (826)
-. +.+ .+ .....|+.-+|+|+|+.|+-.. .|.=++|.+.-..... ...++.+..--|-..+.+.
T Consensus 271 wt----~er-----w~-lgsgrvqtacWspcGsfLLf~~-sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~- 338 (445)
T KOG2139|consen 271 WT----KER-----WI-LGSGRVQTACWSPCGSFLLFAC-SGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTIC- 338 (445)
T ss_pred ce----ecc-----ee-ccCCceeeeeecCCCCEEEEEE-cCCceEEEEeecCCCccccCcccceeeeeeccchhhhhh-
Confidence 10 011 11 1224899999999998765442 2344666664321110 0011110000000000000
Q ss_pred EEEeeccCCeEEEEEccCCCEEEEEecCCe--------EEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcE
Q 003360 340 VKVMKINGSIISLNMNRNSQHLAVGSDQGY--------VYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF 411 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~lasGs~dG~--------V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~ 411 (826)
.-.....+.+.+|+|.|.|.++|+-...+. |.+||.+..-++.-..+......+..-+.|.+.. .++.+
T Consensus 339 ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~---n~g~l 415 (445)
T KOG2139|consen 339 AGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLK---NEGRL 415 (445)
T ss_pred cCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecc---cCCcE
Confidence 000112567999999999999999876544 6778876554442222211122335667888852 24777
Q ss_pred EEEEECCCcEEEEECC
Q 003360 412 LVIATKDSSVLVLDSD 427 (826)
Q Consensus 412 l~sgs~Dg~V~iwd~~ 427 (826)
|.++=+.|.+.-|++.
T Consensus 416 LsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 416 LSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEEeccCceEeeeeE
Confidence 7777777777666654
No 223
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.91 E-value=1.7e-06 Score=100.59 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=112.7
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
-++..++-.|+|++|+...- ..|..+.+|++.|..+.++.+|+++++.+ |.++|+|......
T Consensus 146 ~~i~~gsv~~~iivW~~~~d-----------------n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~ 208 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHED-----------------NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE 208 (967)
T ss_pred EEEEeccccccEEEEecccc-----------------CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccc
Confidence 34455666789999987631 12235789999999999999999999999 9999999655444
Q ss_pred eee-cccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCC-CCeEEEEEeCCCCEEEE
Q 003360 225 LLD-FETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG-IPLTALYYDGTSRVLVS 300 (826)
Q Consensus 225 ~~~-~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~-~~V~~l~fsp~~~~Las 300 (826)
... ..++|+..|+. ++++ .|+|++.|-+.|+|+..+.++. .+..|. ..|+.++..+...+.++
T Consensus 209 ~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-----------~y~~h~g~~iw~~~~~~~~~~~vT 275 (967)
T KOG0974|consen 209 VLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-----------VYDEHSGKGIWKIAVPIGVIIKVT 275 (967)
T ss_pred ccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh-----------hhhhhhhcceeEEEEcCCceEEEe
Confidence 333 35899999998 8887 9999999999999988776632 123454 78999999999999999
Q ss_pred EeCCCcEEEEEeCCC
Q 003360 301 GDQSGMVRIFKLKYE 315 (826)
Q Consensus 301 gs~dg~V~iwd~~~~ 315 (826)
++.||.+++|++...
T Consensus 276 ~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 276 GGNDSTLKLWDLNGR 290 (967)
T ss_pred eccCcchhhhhhhcc
Confidence 999999999998654
No 224
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=1.7e-07 Score=106.45 Aligned_cols=176 Identities=12% Similarity=0.057 Sum_probs=109.4
Q ss_pred CcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECC---CcEEEEeCCCCceeeeeecccccccccccCCCCeE
Q 003360 213 EDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD---GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLT 287 (826)
Q Consensus 213 ~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D---GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~ 287 (826)
..+.+|+........+ ..|.+.+.+ |+|+|+.|+..+.+ ..|++||+.+.....+..+. . ...
T Consensus 184 ~~i~i~d~dg~~~~~l-t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~--------g---~~~ 251 (429)
T PRK01742 184 YEVRVADYDGFNQFIV-NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR--------G---HNG 251 (429)
T ss_pred EEEEEECCCCCCceEe-ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC--------C---ccC
Confidence 4677776544333333 456666766 99999999887654 36999999544322221111 1 234
Q ss_pred EEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-
Q 003360 288 ALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS- 365 (826)
Q Consensus 288 ~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs- 365 (826)
.++|+|+++.|+.++ .+|.+.||.+.... +.. .+...+...+.+.+|+|+|+.++..+
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~---------------~~~-----~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANG---------------GTP-----SQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCC---------------CCe-----EeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 689999999888764 68887777654211 111 11222345578899999999877665
Q ss_pred cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 366 DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 366 ~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
.+|...||++......... . .+.. .+..|+| |+.+|++.+.++ +.+||+.+|+..
T Consensus 312 ~~g~~~I~~~~~~~~~~~~-l--~~~~--~~~~~Sp------DG~~ia~~~~~~-i~~~Dl~~g~~~ 366 (429)
T PRK01742 312 RSGSPQVYRMSASGGGASL-V--GGRG--YSAQISA------DGKTLVMINGDN-VVKQDLTSGSTE 366 (429)
T ss_pred CCCCceEEEEECCCCCeEE-e--cCCC--CCccCCC------CCCEEEEEcCCC-EEEEECCCCCeE
Confidence 5788888876432211111 1 1121 3456777 688888887765 556999888654
No 225
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=3.6e-08 Score=105.25 Aligned_cols=234 Identities=14% Similarity=0.198 Sum_probs=159.2
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC-CCceeecccccCCccee--eCC--CCCEEEEEECCCcEEEEeC
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS-VPPLLDFETKLKDGSQS--HSK--VKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~-~~~~~~~~~~h~g~V~~--~s~--~~~~l~Tgs~DGtVriWD~ 260 (826)
.|..|.+.|..+.|+..|..+++++ |..+.+|+.. ......|..+|...|.. |-| +..-|++++.||.||+=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 4688999999999999999999999 8899999653 34566677889888877 544 3457999999999998777
Q ss_pred -CCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCc--------ccc---ceEEEe
Q 003360 261 -SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHA--------IEN---SFLSFT 327 (826)
Q Consensus 261 -s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~--------~~~---~~~~i~ 327 (826)
..+.. .. ...+..|.++|..++.-|++ ..|.+++.|+.|.=+|++.+... .+. .+..++
T Consensus 217 ~~t~~~-----e~---t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 217 LETGYV-----EN---TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred ccccce-----ec---ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 22221 11 22234688999999999987 46899999999999999876221 111 122222
Q ss_pred ecCCCC-e---------------EEEEE-------EEEe------eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC
Q 003360 328 GSKKGN-S---------------HIIHS-------VKVM------KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP 378 (826)
Q Consensus 328 ~s~~~~-~---------------~~~~~-------~~~~------~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~ 378 (826)
..+... . ..++. -++. .....|+|++|+.++.-+.+.+.|-.|+++.-.-+
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence 211110 0 00000 0111 11345999999988888888888888999954322
Q ss_pred ee----------EEeeecccCC--CCCeeEEEE-eecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 379 TV----------LYQKHIASDI--SSGIVSLQF-ETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 379 ~~----------l~~~~~~~~~--~~~V~sl~f-~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.- .+......+| ...|..+.| .| ...++++|+.-|.|.||+-.+++.+.-
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP------rsEyVvSGSDCGhIFiW~K~t~eii~~ 431 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP------RSEYVVSGSDCGHIFIWDKKTGEIIRF 431 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccC------ccceEEecCccceEEEEecchhHHHHH
Confidence 11 1222223444 345777875 34 488999999999999999999887754
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.88 E-value=4.7e-07 Score=92.99 Aligned_cols=177 Identities=16% Similarity=0.208 Sum_probs=111.4
Q ss_pred cccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCC----ceeecccc-----cCCccee--eCCCC-CEEEEEECCCcEE
Q 003360 189 PFLDSSITAMKLITGNSFILSSADEDYSLLAKSVP----PLLDFETK-----LKDGSQS--HSKVK-NLFITGHSDGAIN 256 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~----~~~~~~~~-----h~g~V~~--~s~~~-~~l~Tgs~DGtVr 256 (826)
..|.-.|..++++.|+..++++.|-.|.+|+.... .+... .| .+.-|++ |||.. ++++-.+..|+||
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDI-KP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDI-KPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEc-cccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 46777899999999999999999999999964321 11222 22 2333455 99865 4778888999999
Q ss_pred EEeCCCCce--eeeeecccccccc-----cccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeec
Q 003360 257 FWDVSCPLF--LLILSLKQQSEKD-----FSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS 329 (826)
Q Consensus 257 iWD~s~~~~--~~i~~l~~~~~~~-----~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s 329 (826)
+-|+....+ .. .++-.+.+.. |..--..|..+.|++.|+++++-+. -+|++||+...... +..
T Consensus 240 LcDmR~~aLCd~h-sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~p----v~t---- 309 (433)
T KOG1354|consen 240 LCDMRQSALCDAH-SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKP----VET---- 309 (433)
T ss_pred Eeechhhhhhcch-hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCc----ceE----
Confidence 999943221 00 0111011111 1111168999999999999987643 48999999754221 111
Q ss_pred CCCCeEEEEE-EEE--ee--ccC---CeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 330 KKGNSHIIHS-VKV--MK--ING---SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 330 ~~~~~~~~~~-~~~--~~--~~~---~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
..+|. ++. .. -+. .=.-++|+.++.++++|+....+++++...+...
T Consensus 310 -----~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 310 -----YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred -----EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence 00110 000 00 011 1245789999999999999999999997666544
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=5.6e-07 Score=102.48 Aligned_cols=200 Identities=11% Similarity=0.058 Sum_probs=123.0
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--C--CcEEEeccCCCceeecccccCCccee--eCCCCCEEE-EEECCC--cEEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--D--EDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI-TGHSDG--AINFW 258 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d--~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DG--tVriW 258 (826)
+..+...+...+|+|+++.++..+ + ..+.+|+........+ ..+.+...+ |+|+|+.|+ +.+.+| .|.+|
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~ 277 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVM 277 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence 456677889999999999998865 2 2466776544333222 223333333 999998664 556666 48889
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEe--CCCCCccccceEEEeecCCCCeE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKL--KYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~--~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
|+.+..... +. .+.......+|+|+++.|+.++ .+|...||.+ .++.. ..
T Consensus 278 d~~~g~~~~---lt--------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~------~~---------- 330 (433)
T PRK04922 278 DLGSRQLTR---LT--------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA------ER---------- 330 (433)
T ss_pred ECCCCCeEE---Cc--------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe------EE----------
Confidence 985554211 21 2223456789999999888765 4566555544 32211 00
Q ss_pred EEEEEEEeeccCCeEEEEEccCCCEEEEEecCC---eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 336 IIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG---YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 336 ~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG---~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
+. .........+|+|+|+.++..+.++ .|.+||+.++.... +..+ .......|++ |+..|
T Consensus 331 ----lt--~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~---Lt~~--~~~~~p~~sp------dG~~i 393 (433)
T PRK04922 331 ----LT--FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT---LTPG--SLDESPSFAP------NGSMV 393 (433)
T ss_pred ----ee--cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE---CCCC--CCCCCceECC------CCCEE
Confidence 11 1122345689999999998876543 69999998776541 1111 1234567887 68877
Q ss_pred EEEECC---CcEEEEECCCCceEE
Q 003360 413 VIATKD---SSVLVLDSDNGNMLS 433 (826)
Q Consensus 413 ~sgs~D---g~V~iwd~~tg~~i~ 433 (826)
+..+.+ +.|.+++.. |....
T Consensus 394 ~~~s~~~g~~~L~~~~~~-g~~~~ 416 (433)
T PRK04922 394 LYATREGGRGVLAAVSTD-GRVRQ 416 (433)
T ss_pred EEEEecCCceEEEEEECC-CCceE
Confidence 766653 357888886 44433
No 228
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.86 E-value=8.5e-07 Score=90.53 Aligned_cols=278 Identities=14% Similarity=0.143 Sum_probs=165.9
Q ss_pred EEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCcee
Q 003360 149 LLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLL 226 (826)
Q Consensus 149 iv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~ 226 (826)
.+....+.+.+|+..+- +..-.+.-....+..++++|+|+.++..+ +-.|.+|...+....
T Consensus 65 C~~yk~~~vqvwsl~Qp-----------------ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 65 CVAYKDPKVQVWSLVQP-----------------EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred eeeeccceEEEEEeecc-----------------eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 45556778888988761 13344566667899999999998887755 888999965432222
Q ss_pred ecccccCCcce--eeCCCCCEEEEEECC------------------------------------CcEEEEeC--CCCcee
Q 003360 227 DFETKLKDGSQ--SHSKVKNLFITGHSD------------------------------------GAINFWDV--SCPLFL 266 (826)
Q Consensus 227 ~~~~~h~g~V~--~~s~~~~~l~Tgs~D------------------------------------GtVriWD~--s~~~~~ 266 (826)
-..++ +.++. +|+++|++.+.++.- ..+-+||. ....
T Consensus 128 ~~~~p-K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv-- 204 (447)
T KOG4497|consen 128 LLPHP-KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV-- 204 (447)
T ss_pred Eeccc-ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee--
Confidence 22222 22222 288888887776632 22334443 1111
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC----CCccccc--------------------
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE----PHAIENS-------------------- 322 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~----~~~~~~~-------------------- 322 (826)
+.+ .-+-.+..++|+|-+++|++|+.|+.+|+-+--+- +..|..+
T Consensus 205 ----~aY-------e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 205 ----YAY-------ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred ----eee-------eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 000 01257889999999999999999999998553321 1111110
Q ss_pred eEEEeecCCCC-----------------eEEEEEEE--E--eeccCCeEEEEEccCCCEEEEEecC--CeEEEEecCCCe
Q 003360 323 FLSFTGSKKGN-----------------SHIIHSVK--V--MKINGSIISLNMNRNSQHLAVGSDQ--GYVYLLDTEGPT 379 (826)
Q Consensus 323 ~~~i~~s~~~~-----------------~~~~~~~~--~--~~~~~~V~~l~~s~~g~~lasGs~d--G~V~vwD~~~~~ 379 (826)
..++++.+... ...+|.++ . ......+--++||+|..++|+-.+. ..+-+||++..+
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 11222221110 11111111 0 0113348889999999988886543 568999998765
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCccc
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLAR 459 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~ 459 (826)
+-.. -....+|....|.|. ...|++++....+++|......+++ .+.. + +.++-+
T Consensus 354 l~av----LiQk~piraf~WdP~------~prL~vctg~srLY~W~psg~~~V~----vP~~-G--F~i~~l-------- 408 (447)
T KOG4497|consen 354 LHAV----LIQKHPIRAFEWDPG------RPRLVVCTGKSRLYFWAPSGPRVVG----VPKK-G--FNIQKL-------- 408 (447)
T ss_pred hhhh----hhhccceeEEEeCCC------CceEEEEcCCceEEEEcCCCceEEe----cCCC-C--ceeeeE--------
Confidence 4311 123458999999994 6788888888899999988433332 2222 2 333333
Q ss_pred CccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 460 GANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
.|...+.++++|+++..-+--++
T Consensus 409 -----------------~W~~~g~~i~l~~kDafc~a~ve 431 (447)
T KOG4497|consen 409 -----------------QWLQPGEFIVLCGKDAFCVAIVE 431 (447)
T ss_pred -----------------EecCCCcEEEEEcCCceEEEEec
Confidence 34455678888888765554333
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.82 E-value=4.9e-08 Score=99.34 Aligned_cols=209 Identities=13% Similarity=0.188 Sum_probs=133.6
Q ss_pred EEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee-eCCCCC-EEEEEECCCcEEEEeCCCCceeeeeeccccc
Q 003360 198 MKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS-HSKVKN-LFITGHSDGAINFWDVSCPLFLLILSLKQQS 275 (826)
Q Consensus 198 ~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~-~s~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~ 275 (826)
++|+|+|+++++.++-.+.+-+..+-++.....-...-+.- |..+.. +|...+.|+.|.+|++..++.. +++
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~--ckI---- 87 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY--CKI---- 87 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE--EEe----
Confidence 67999999999988555444444332222110000111111 666655 4556689999999999776631 222
Q ss_pred ccccccCCCCeEEEEEeCCCCE-EEEEeCCCcEEEEEeCCCCCcc----ccceEEEeecCCCCeEEEEE-----------
Q 003360 276 EKDFSLSGIPLTALYYDGTSRV-LVSGDQSGMVRIFKLKYEPHAI----ENSFLSFTGSKKGNSHIIHS----------- 339 (826)
Q Consensus 276 ~~~~~~h~~~V~~l~fsp~~~~-Lasgs~dg~V~iwd~~~~~~~~----~~~~~~i~~s~~~~~~~~~~----------- 339 (826)
+...+++.+++|+|+|+. |.+...+-.|.+|.+.+....+ ...+..++++++|..+.+-.
T Consensus 88 ----deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 88 ----DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred ----ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 233478999999999965 5566678899999998774321 12346677888886544322
Q ss_pred -------EEEeec-cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcE
Q 003360 340 -------VKVMKI-NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF 411 (826)
Q Consensus 340 -------~~~~~~-~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~ 411 (826)
++.... .-..+.+.|+|||..+| |||.--...++.. ..+-.+..++|+|+ +++
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aY----e~~lG~k~v~wsP~------~qf 224 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAY----ERGLGLKFVEWSPC------NQF 224 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhheeeee----eeccceeEEEeccc------cce
Confidence 111111 33578899999998665 5664322222211 22346888999996 999
Q ss_pred EEEEECCCcEEEEECCCCceEEee
Q 003360 412 LVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 412 l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
|++|+.|+.++|.+--+-+.+..+
T Consensus 225 lavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred EEeeccchhhhhhceeeeeehhhh
Confidence 999999999999988776665554
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=7.8e-07 Score=91.98 Aligned_cols=199 Identities=12% Similarity=0.100 Sum_probs=131.6
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCC-EEEEEECCCcEEEEeCCCCce
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD~s~~~~ 265 (826)
+.+..+..+++++.--.++.+. |.+|++|+.+......++......|.| |-|.+. -|+.|.. +-|.||..+....
T Consensus 96 ws~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 96 WSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred hhhcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccc
Confidence 4455677888888666667777 999999987764444444556677888 777654 5666665 4689999843321
Q ss_pred ee-----eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 266 LL-----ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 266 ~~-----i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
.- +.....+ +..-.+| .+|++|.|.+|+..|++++.+ ..|.|||..++....
T Consensus 175 ~~r~~~~~s~~~~q-vl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p-------------------- 232 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQ-VLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP-------------------- 232 (445)
T ss_pred cccccccccccchh-heeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc--------------------
Confidence 00 0001101 1111233 799999999999999998874 589999998665421
Q ss_pred EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC-CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcE-EEEEEC
Q 003360 340 VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE-GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF-LVIATK 417 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~-~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~-l~sgs~ 417 (826)
++ ....+.++-|.|||||.++..++-|+..++|... +.+.. .+.- .++.|..-+|+|+ |.+ |++++.
T Consensus 233 L~-~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e---rw~l-gsgrvqtacWspc------GsfLLf~~sg 301 (445)
T KOG2139|consen 233 LI-PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE---RWIL-GSGRVQTACWSPC------GSFLLFACSG 301 (445)
T ss_pred cc-ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceec---ceec-cCCceeeeeecCC------CCEEEEEEcC
Confidence 11 1224568999999999999999999999999543 33333 2211 2338889999995 554 445554
Q ss_pred CCcEE
Q 003360 418 DSSVL 422 (826)
Q Consensus 418 Dg~V~ 422 (826)
...++
T Consensus 302 sp~ly 306 (445)
T KOG2139|consen 302 SPRLY 306 (445)
T ss_pred CceEE
Confidence 44443
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=1.6e-06 Score=98.48 Aligned_cols=202 Identities=14% Similarity=0.103 Sum_probs=124.6
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--CC--cEEEeccCCCceeecccccCCccee--eCCCCCEEE-EEECCCcEEEEeC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--DE--DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI-TGHSDGAINFWDV 260 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d~--~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DGtVriWD~ 260 (826)
+..+...+...+|+|+++.++..+ ++ .+.+|+........+ ....+.+.+ |+|+|+.|+ +...||..+||.+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 445667888999999999998765 23 366676544333322 222333434 999998776 5678898888875
Q ss_pred --CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 261 --SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 261 --s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
.+... ..+. .+...+....|+||++.|+..+ .+|...||.+..... ....
T Consensus 270 d~~~~~~---~~lt--------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g---------------~~~~- 322 (427)
T PRK02889 270 NADGSGL---RRLT--------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG---------------AAQR- 322 (427)
T ss_pred ECCCCCc---EECC--------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC---------------ceEE-
Confidence 33332 1121 2333456778999999887655 457788887752111 1100
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCC---eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQG---YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG---~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
+. .........+|+|+|++|+..+.++ .|.+||+.++...... .. .......|+| |+..|+.
T Consensus 323 --lt--~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt---~~--~~~~~p~~sp------dg~~l~~ 387 (427)
T PRK02889 323 --VT--FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT---DT--TRDESPSFAP------NGRYILY 387 (427)
T ss_pred --Ee--cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc---CC--CCccCceECC------CCCEEEE
Confidence 11 1122244678999999999877654 6999999887654211 11 2235578888 6888877
Q ss_pred EECCC---cEEEEECCCCceEE
Q 003360 415 ATKDS---SVLVLDSDNGNMLS 433 (826)
Q Consensus 415 gs~Dg---~V~iwd~~tg~~i~ 433 (826)
.+.++ .+.+.+.. |+...
T Consensus 388 ~~~~~g~~~l~~~~~~-g~~~~ 408 (427)
T PRK02889 388 ATQQGGRSVLAAVSSD-GRIKQ 408 (427)
T ss_pred EEecCCCEEEEEEECC-CCceE
Confidence 77554 35555653 54433
No 232
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.79 E-value=5.3e-05 Score=92.92 Aligned_cols=241 Identities=14% Similarity=0.136 Sum_probs=148.6
Q ss_pred CceeeEEEecCCCCCCCCCCceEEEeccCccEEEe----cchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEe
Q 003360 126 EPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAF----DDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLI 201 (826)
Q Consensus 126 ~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~----d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs 201 (826)
+.++.|..++.. ..+++++..|.|.++ |... ...-.+...+..|.+++||
T Consensus 76 ~~ivs~~yl~d~--------~~l~~~~~~Gdi~~~~~~~~~~~------------------~~~E~VG~vd~GI~a~~WS 129 (928)
T PF04762_consen 76 DKIVSFQYLADS--------ESLCIALASGDIILVREDPDPDE------------------DEIEIVGSVDSGILAASWS 129 (928)
T ss_pred CcEEEEEeccCC--------CcEEEEECCceEEEEEccCCCCC------------------ceeEEEEEEcCcEEEEEEC
Confidence 456666666443 668899999999998 3332 1122245677899999999
Q ss_pred eCCCeEEEec-CCcEEEeccCC---------------Cceeecccc--------------------------------cC
Q 003360 202 TGNSFILSSA-DEDYSLLAKSV---------------PPLLDFETK--------------------------------LK 233 (826)
Q Consensus 202 ~~~~~l~~~~-d~~i~~w~~~~---------------~~~~~~~~~--------------------------------h~ 233 (826)
||...++... ++.+.+..... .......|| +.
T Consensus 130 PD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~d 209 (928)
T PF04762_consen 130 PDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWD 209 (928)
T ss_pred CCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccC
Confidence 9999999876 77766552110 011111111 00
Q ss_pred -Cccee-eCCCCCEEEEEEC---C---CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC--
Q 003360 234 -DGSQS-HSKVKNLFITGHS---D---GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-- 303 (826)
Q Consensus 234 -g~V~~-~s~~~~~l~Tgs~---D---GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-- 303 (826)
+.+.- |-.||.++|+.+- + ..+|||+-.+... . .-+ ... +--.+++|.|.|.++|+.-.
T Consensus 210 d~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~-s--tSE--~v~------gLe~~l~WrPsG~lIA~~q~~~ 278 (928)
T PF04762_consen 210 DGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQ-S--TSE--PVD------GLEGALSWRPSGNLIASSQRLP 278 (928)
T ss_pred CCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEE-e--ccc--cCC------CccCCccCCCCCCEEEEEEEcC
Confidence 11111 8899999998875 3 4789999764431 1 111 011 12347899999999998765
Q ss_pred -CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE
Q 003360 304 -SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 304 -dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
...|.+|.-+ |-.|.-..+++......|..|+|++++..||+-..|. |.+|-..+..-..
T Consensus 279 ~~~~VvFfErN------------------GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYL 339 (928)
T PF04762_consen 279 DRHDVVFFERN------------------GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYL 339 (928)
T ss_pred CCcEEEEEecC------------------CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEE
Confidence 2345555432 2111100022323355699999999999999988776 9999987766443
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
...+.......+..+.|+|- +...|.+.+.+|.+..++..
T Consensus 340 Kqei~~~~~~~~~~~~Wdpe-----~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 340 KQEIRFSSSESVNFVKWDPE-----KPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred EEEEEccCCCCCCceEECCC-----CCCEEEEEecCCcEEEEEEE
Confidence 33333233444555889885 46678888877777666543
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.77 E-value=1.2e-05 Score=88.83 Aligned_cols=329 Identities=11% Similarity=0.094 Sum_probs=171.9
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~ 225 (826)
.+++....|++.++|..+. +..-.++.....-..+.|++|++++++++ |+.+.+++......
T Consensus 8 ~~V~~~~~~~v~viD~~t~-----------------~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~ 70 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATN-----------------KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV 70 (369)
T ss_dssp EEEEEGGGTEEEEEETTT------------------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE
T ss_pred EEEEecCCCEEEEEECCCC-----------------eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE
Confidence 3455667899999998762 12233444433334467899999999988 99999998765444
Q ss_pred eecccccCCccee--eCCCCCEEEEE-ECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe
Q 003360 226 LDFETKLKDGSQS--HSKVKNLFITG-HSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD 302 (826)
Q Consensus 226 ~~~~~~h~g~V~~--~s~~~~~l~Tg-s~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs 302 (826)
... ........+ ++++|++++++ ..++.|.++|....+ ++..+...... .......|.+|..+|....+++.-
T Consensus 71 v~~-i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle--~v~~I~~~~~~-~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 71 VAT-IKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE--PVKTIPTGGMP-VDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp EEE-EE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE--EE--TTTS---EEEEEE-SSSSEEEEEE
T ss_pred EEE-EecCCCcceEEEcCCCCEEEEEecCCCceeEecccccc--ceeeccccccc-ccccCCCceeEEecCCCCEEEEEE
Confidence 322 111111122 89999988766 578999999984433 23333311000 011335788898899998777776
Q ss_pred CC-CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE-ecCCeEEEEecCCCee
Q 003360 303 QS-GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG-SDQGYVYLLDTEGPTV 380 (826)
Q Consensus 303 ~d-g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG-s~dG~V~vwD~~~~~~ 380 (826)
.| +.|.+-|+.... ... .+............|+|++++++++ ..+..|.++|..+++.
T Consensus 147 kd~~~I~vVdy~d~~-----------------~~~---~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPK-----------------NLK---VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp TTTTEEEEEETTTSS-----------------CEE---EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred ccCCeEEEEEecccc-----------------ccc---eeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 65 777777766321 111 2333334456788999999987664 5677999999999987
Q ss_pred EEeeecc-cCCCCCeeEEEEeec----ccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCC
Q 003360 381 LYQKHIA-SDISSGIVSLQFETC----SLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQD 455 (826)
Q Consensus 381 l~~~~~~-~~~~~~V~sl~f~~~----~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~ 455 (826)
+...... ..|..++..+- +|. ......+...++.-....+.+||..+.+.+.++... +..+.+.
T Consensus 207 v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~----G~glFi~------ 275 (369)
T PF02239_consen 207 VALIDTGKKPHPGPGANFP-HPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ----GGGLFIK------ 275 (369)
T ss_dssp EEEEE-SSSBEETTEEEEE-ETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S----SSS--EE------
T ss_pred EEEeecccccccccccccc-CCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC----CCcceee------
Confidence 7544331 11333333221 110 000001122222222234566777777777775332 1112221
Q ss_pred CcccCccccccccccCCCCCCCCCCCCCEEEEe----e-cCcEEEEeccccccccceeeeeeecCCCCc--eeeEeeee-
Q 003360 456 GLARGANLSNVAGMNKGSPKENAVPKQWFVLLC----S-EKAACAYSLSHAVQGVKKVLYKKKFHSSSC--CWASTFYS- 527 (826)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~----s-e~~irv~sl~~~~~g~~k~~~k~~~~~~~c--~~~~~~~~- 527 (826)
.+|+..++.+. . ++.|.|++..+. +.+..... ... ..-..+..
T Consensus 276 ----------------------thP~s~~vwvd~~~~~~~~~v~viD~~tl-----~~~~~i~~--~~~~~~~h~ef~~d 326 (369)
T PF02239_consen 276 ----------------------THPDSRYVWVDTFLNPDADTVQVIDKKTL-----KVVKTITP--GPGKRVVHMEFNPD 326 (369)
T ss_dssp ------------------------TT-SEEEEE-TT-SSHT-EEEEECCGT-----EEEE-HHH--HHT--EEEEEE-TT
T ss_pred ----------------------cCCCCccEEeeccCCCCCceEEEEECcCc-----ceeEEEec--cCCCcEeccEECCC
Confidence 24455566666 2 358999998732 23322211 011 11112222
Q ss_pred CCceEEEEEEeeceEEEeccCCccccccc
Q 003360 528 GSDVGLMLLFTSGKFEIRSLPELSLLKET 556 (826)
Q Consensus 528 ~~~~~lv~~~~~G~I~i~slP~L~~l~~~ 556 (826)
+....+.+...+|.|.|+.-..|+++..+
T Consensus 327 G~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 327 GKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp SSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 44445555555569999999999998884
No 234
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=9.4e-08 Score=102.11 Aligned_cols=308 Identities=13% Similarity=0.122 Sum_probs=180.1
Q ss_pred CcCCeEEEEEeeeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceee---EEEecCCCCCCCCCCce
Q 003360 71 DKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCID---MEIISSSSDPNKPKQDS 147 (826)
Q Consensus 71 ~~~pI~~l~W~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d---~~~l~~~~~~~~~~~~~ 147 (826)
+...|-.|++.. .|.+++.|+++. +++.++|......+.+. .+++.. ..++|.+ ++..
T Consensus 141 H~GcVntV~FN~----~Gd~l~SgSDD~------~vv~WdW~~~~~~l~f~---SGH~~NvfQaKFiP~s------~d~t 201 (559)
T KOG1334|consen 141 HKGCVNTVHFNQ----RGDVLASGSDDL------QVVVWDWVSGSPKLSFE---SGHCNNVFQAKFIPFS------GDRT 201 (559)
T ss_pred CCCccceeeecc----cCceeeccCccc------eEEeehhhccCcccccc---cccccchhhhhccCCC------CCcC
Confidence 444566665544 677888888754 78888888765443322 122221 1133322 2344
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEE-Eec-CCcEEEeccC--CC
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFIL-SSA-DEDYSLLAKS--VP 223 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~--~~ 223 (826)
++..+.+|++.+-..-. +--.+....+..|..+|..++.-|+.++-+ +++ |+.+.-.+.. .+
T Consensus 202 i~~~s~dgqvr~s~i~~--------------t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 202 IVTSSRDGQVRVSEILE--------------TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred ceeccccCceeeeeecc--------------ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc
Confidence 56667778877632211 111222345678999999999999877654 455 7777655332 21
Q ss_pred c-eeecccccCC---ccee--eCCCC-CEEEEEECCCcEEEEeCC-CCce---eeeeecccccccccccCCCCeEEEEEe
Q 003360 224 P-LLDFETKLKD---GSQS--HSKVK-NLFITGHSDGAINFWDVS-CPLF---LLILSLKQQSEKDFSLSGIPLTALYYD 292 (826)
Q Consensus 224 ~-~~~~~~~h~g---~V~~--~s~~~-~~l~Tgs~DGtVriWD~s-~~~~---~~i~~l~~~~~~~~~~h~~~V~~l~fs 292 (826)
. ....+..+.. +..+ ..|.. ..+++|+.|-.+|+||.. .... .++.++... .-+.-....|++++|+
T Consensus 268 a~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~--hl~~d~~v~ITgl~Ys 345 (559)
T KOG1334|consen 268 AEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH--HLVEDDPVNITGLVYS 345 (559)
T ss_pred cceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc--cccccCcccceeEEec
Confidence 1 1112222222 2233 45544 489999999999999972 1110 000111000 0001122679999999
Q ss_pred CCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec--cCCeEEEEE-ccCCCEEEEEecCCe
Q 003360 293 GTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI--NGSIISLNM-NRNSQHLAVGSDQGY 369 (826)
Q Consensus 293 p~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~--~~~V~~l~~-s~~g~~lasGs~dG~ 369 (826)
.++..|.++-.|-.|.+|.-..+.. +..... ++...... ..+..| ...|..+-| -|...+|++|++.|.
T Consensus 346 h~~sElLaSYnDe~IYLF~~~~~~G--~~p~~~---s~~~~~~k---~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGh 417 (559)
T KOG1334|consen 346 HDGSELLASYNDEDIYLFNKSMGDG--SEPDPS---SPREQYVK---RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGH 417 (559)
T ss_pred CCccceeeeecccceEEeccccccC--CCCCCC---cchhhccc---hhhcccccccccceeeeccCccceEEecCccce
Confidence 8888888888888888884332211 111000 00000000 112222 223777776 577789999999999
Q ss_pred EEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 370 VYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 370 V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
|.|||-.+++++.-+ .+...-|.||.-.|. -+.|++++-|..||||...+.+
T Consensus 418 IFiW~K~t~eii~~M---egDr~VVNCLEpHP~------~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 418 IFIWDKKTGEIIRFM---EGDRHVVNCLEPHPH------LPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred EEEEecchhHHHHHh---hcccceEeccCCCCC------CchhhccCCccceeeecCCccc
Confidence 999999999888322 233338888888885 7789999999999999986433
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=2.7e-07 Score=96.34 Aligned_cols=198 Identities=13% Similarity=0.164 Sum_probs=136.9
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEE-ec-C--CcEEEec
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS-SA-D--EDYSLLA 219 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~-~~-d--~~i~~w~ 219 (826)
.+..++....+|.+.+|.+..-.. . ......+. ..+.+..+.-.+..+++++ |+ . .-+.+|+
T Consensus 114 ~dg~Litc~~sG~l~~~~~k~~d~-------h------ss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 114 ADGTLITCVSSGNLQVRHDKSGDL-------H------SSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cCCEEEEEecCCcEEEEeccCCcc-------c------cccceeee-cCCceeeeccCCCCCceEecCchhcccceeeee
Confidence 346678888999999998763100 0 00111122 2356777777777777776 55 4 4578886
Q ss_pred cCCC-ceeeccc------ccCCccee----eCCC--CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCe
Q 003360 220 KSVP-PLLDFET------KLKDGSQS----HSKV--KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPL 286 (826)
Q Consensus 220 ~~~~-~~~~~~~------~h~g~V~~----~s~~--~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V 286 (826)
.... +++..+. +..-.||- |-+. ...++|++.-+.||+||...+. .|+..+ ..-..+|
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~f--------d~~E~~i 250 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQF--------DFLENPI 250 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-cceeEe--------ccccCcc
Confidence 5432 2222211 12223333 6665 7799999999999999994332 133333 3345799
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec
Q 003360 287 TALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD 366 (826)
Q Consensus 287 ~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~ 366 (826)
+++...|.+..+++|..-|.+..||++++.... ..+....+.|++|..+|.+.++|+++-
T Consensus 251 s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g--------------------~~~kg~tGsirsih~hp~~~~las~GL 310 (412)
T KOG3881|consen 251 SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG--------------------CGLKGITGSIRSIHCHPTHPVLASCGL 310 (412)
T ss_pred eeeeecCCCcEEEEecccchhheecccCceeec--------------------cccCCccCCcceEEEcCCCceEEeecc
Confidence 999999999999999999999999999543311 334455788999999999999999999
Q ss_pred CCeEEEEecCCCeeEEee
Q 003360 367 QGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~ 384 (826)
|..|||+|+.+.++++..
T Consensus 311 DRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 311 DRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred ceeEEEeecccchhhhhh
Confidence 999999999997777433
No 236
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.71 E-value=4.2e-07 Score=93.41 Aligned_cols=226 Identities=13% Similarity=0.117 Sum_probs=154.9
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc-CCCceeecccccCCcc--ee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK-SVPPLLDFETKLKDGS--QS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~-~~~~~~~~~~~h~g~V--~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
.+.+|...|+....-|..+.+++.+ |.++++|-+ +..+..+- ..|..+. .+ +.+....|+.|-.+|+|.=+..
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps-I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS-IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch-hhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 3577888889888999999999998 999999933 33222221 2244333 33 7778889999999999998877
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc---------c--ceEEEeec
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE---------N--SFLSFTGS 329 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~---------~--~~~~i~~s 329 (826)
+...... ..++ ....|...|..+-|+-...++++.+.|..+.---.+.+...+. . .+. ..+-
T Consensus 98 sedfnkm-~~~r-----~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-~~fv 170 (404)
T KOG1409|consen 98 SEDFNKM-TFLK-----DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL-YAFV 170 (404)
T ss_pred hhhhhhc-chhh-----hhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE-EEEe
Confidence 4332111 1111 1235778999999999999999999998765433333311100 0 000 1111
Q ss_pred --CCCC--eEEEEE------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 330 --KKGN--SHIIHS------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 330 --~~~~--~~~~~~------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
..+. .+++.. ..+..|.+.|++++|.+..+++.+|+.|..|.+||+...+-+ .....+|...|..+.+
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~--~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT--AYELQGHNDKVQALSY 248 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce--eeeeccchhhhhhhhh
Confidence 1111 011110 445567888999999999999999999999999999776654 3334578888998888
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
.+. ...+++++.||.|.+|+.+.
T Consensus 249 ~~~------t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 249 AQH------TRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhh------heeeeeccCCCeEEEEeccc
Confidence 875 78899999999999999984
No 237
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.71 E-value=0.0005 Score=84.50 Aligned_cols=173 Identities=12% Similarity=0.153 Sum_probs=107.7
Q ss_pred EEEEeeCCCeEEEec----CCcEEEeccCCCceeec--cc-ccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceee
Q 003360 197 AMKLITGNSFILSSA----DEDYSLLAKSVPPLLDF--ET-KLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 197 ~~~fs~~~~~l~~~~----d~~i~~w~~~~~~~~~~--~~-~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
+++|-|.|..+++.. ...|.+|..++-....| .. +....|.. |++++.+||..-.|. |++|-...-.+.+
T Consensus 261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYL 339 (928)
T PF04762_consen 261 ALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYL 339 (928)
T ss_pred CccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEE
Confidence 468899999988854 23477775544333333 22 23445555 999999999987765 9999987666544
Q ss_pred eeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCcccc---ceEEEeecCCCCeEEEEE----
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIEN---SFLSFTGSKKGNSHIIHS---- 339 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~---~~~~i~~s~~~~~~~~~~---- 339 (826)
-..+.+. ....+..+.|+|.. ..|.+...+|.+..+++.-....... .-..+...-||....+..
T Consensus 340 Kqei~~~-------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a 412 (928)
T PF04762_consen 340 KQEIRFS-------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRA 412 (928)
T ss_pred EEEEEcc-------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccccc
Confidence 3444422 12345559999965 56888888788877766422110000 000111112333332221
Q ss_pred -------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC
Q 003360 340 -------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 340 -------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~ 377 (826)
........+|.+++|++++..+|+-..||.|.+|....
T Consensus 413 ~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 413 VVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 22334478899999999998899999999999998543
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.70 E-value=2.7e-07 Score=107.15 Aligned_cols=188 Identities=12% Similarity=0.074 Sum_probs=136.8
Q ss_pred EEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcc------ee-eCCCCCEEEEEECCCcEEEEeCCCCceeeee
Q 003360 198 MKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGS------QS-HSKVKNLFITGHSDGAINFWDVSCPLFLLIL 269 (826)
Q Consensus 198 ~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V------~~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~ 269 (826)
..+.-....++... +..+.+|+........- ..+.... .. ++++.-++++|+.-|.|.+|+...... ++
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~-i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~-p~- 169 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSK-IQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK-PI- 169 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehh-cCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-cc-
Confidence 55555566666655 77777775544332211 2222221 11 777888999999999999999952221 11
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCe
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSI 349 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V 349 (826)
...+|.+.|..+.|+-+++++++.|.|.++|+|++.+.+... ..-..|.+.|
T Consensus 170 --------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------------------~~~fgHsaRv 221 (967)
T KOG0974|consen 170 --------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------------------CTGFGHSARV 221 (967)
T ss_pred --------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------------------ccccccccee
Confidence 246899999999999999999999999999999999665421 2334578889
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
..++|.|+ .++++++|-+.++|+....++- .........|..+...+ +...+++++.|+.+++|+..
T Consensus 222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l~---~y~~h~g~~iw~~~~~~------~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 222 WACCFLPN--RIITVGEDCTCRVWGVNGTQLE---VYDEHSGKGIWKIAVPI------GVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEEEeccc--eeEEeccceEEEEEecccceeh---hhhhhhhcceeEEEEcC------CceEEEeeccCcchhhhhhh
Confidence 99999999 7999999999999977544332 12123345788888887 47889999999999999987
No 239
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.69 E-value=3.2e-07 Score=92.24 Aligned_cols=290 Identities=14% Similarity=0.167 Sum_probs=185.7
Q ss_pred CCeEEEEEeeeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCC--CCCCCCCCceEEE
Q 003360 73 IPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSS--SDPNKPKQDSFLL 150 (826)
Q Consensus 73 ~pI~~l~W~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~--~~~~~~~~~~liv 150 (826)
.|+..+.|+....+ ..-+..|.--....+.++++.++..+..-..+..++...+...+.++|.+ .+| =++
T Consensus 45 ~~lya~~Ws~~~~~-~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p-------dlL 116 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDK-KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP-------DLL 116 (364)
T ss_pred CceeeeccccCCCc-ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc-------chh
Confidence 47888899764322 23333444433346788999998666554444445666677777788765 232 156
Q ss_pred eccCccEEEecchh------HHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC-eEEEec-CCcEEEeccCC
Q 003360 151 LGKSGHFYAFDDCQ------IERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS-FILSSA-DEDYSLLAKSV 222 (826)
Q Consensus 151 ~~~~G~l~~~d~~~------i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~-~l~~~~-d~~i~~w~~~~ 222 (826)
.+++..|.+|.... ++..+... .-..+..++|...|+...+ ++.+++ |-++.+|+...
T Consensus 117 ATs~D~LRlWri~~ee~~~~~~~~L~~~--------------kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~ 182 (364)
T KOG0290|consen 117 ATSSDFLRLWRIGDEESRVELQSVLNNN--------------KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIET 182 (364)
T ss_pred hcccCeEEEEeccCcCCceehhhhhccC--------------cccccCCcccccccccCCcceeEeecccCeEEEEEEee
Confidence 67778999996552 11111000 0133456888888887554 555566 99999996554
Q ss_pred C---ceeecccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-
Q 003360 223 P---PLLDFETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS- 295 (826)
Q Consensus 223 ~---~~~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~- 295 (826)
+ .+.+....|...|.. |...+ +++|+.+.||+||++|+....- .++-++... ...+...++|+++.
T Consensus 183 ~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH---STIIYE~p~----~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 183 GVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH---STIIYEDPS----PSTPLLRLSWNKQDP 255 (364)
T ss_pred ccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---ceEEecCCC----CCCcceeeccCcCCc
Confidence 3 233334679999988 77644 5899999999999999943321 112222110 13578889998865
Q ss_pred CEEEEEeCC-CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEE
Q 003360 296 RVLVSGDQS-GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLL 373 (826)
Q Consensus 296 ~~Lasgs~d-g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vw 373 (826)
+++|+-..| ..|.|.|++.... .. .++..|.+.|..++|.|. ..+++++++|..+.+|
T Consensus 256 nymATf~~dS~~V~iLDiR~P~t----------------pv----a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliW 315 (364)
T KOG0290|consen 256 NYMATFAMDSNKVVILDIRVPCT----------------PV----ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIW 315 (364)
T ss_pred hHHhhhhcCCceEEEEEecCCCc----------------ce----ehhhcCcccccceEecCCCCceeeecCCcceEEEE
Confidence 567765444 5799999983211 21 566778999999999985 5689999999999999
Q ss_pred ecCCCee--EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 374 DTEGPTV--LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 374 D~~~~~~--l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
|+.+.-. +..--+.......|..+.|++. .+..++.+.
T Consensus 316 Dl~q~~~~~~~dPilay~a~~EVNqi~Ws~~-----~~Dwiai~~ 355 (364)
T KOG0290|consen 316 DLQQMPRENGEDPILAYTAGGEVNQIQWSSS-----QPDWIAICF 355 (364)
T ss_pred ecccccccCCCCchhhhhccceeeeeeeccc-----CCCEEEEEe
Confidence 9975422 1000001123457889999974 356666665
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=3.7e-06 Score=95.73 Aligned_cols=175 Identities=12% Similarity=0.061 Sum_probs=108.2
Q ss_pred cEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECC---CcEEEEeCCCCceeeeeecccccccccccCCCCeEE
Q 003360 214 DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD---GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTA 288 (826)
Q Consensus 214 ~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D---GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~ 288 (826)
.+.+|+........+ ..+.+.+.+ |+|+++.|+..+.+ ..|.+||+.+.....+.. ......+
T Consensus 185 ~l~i~D~~g~~~~~l-t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-----------~~g~~~~ 252 (433)
T PRK04922 185 ALQVADSDGYNPQTI-LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-----------FRGINGA 252 (433)
T ss_pred EEEEECCCCCCceEe-ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-----------CCCCccC
Confidence 355565443333333 344555655 99999988887643 469999995554322111 1223457
Q ss_pred EEEeCCCCEEE-EEeCCC--cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe
Q 003360 289 LYYDGTSRVLV-SGDQSG--MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS 365 (826)
Q Consensus 289 l~fsp~~~~La-sgs~dg--~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs 365 (826)
.+|+|+++.|+ +.+.+| .|.+||+.++.. .....+.......+|+|+|+.|++.+
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~----------------------~~lt~~~~~~~~~~~spDG~~l~f~s 310 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL----------------------TRLTNHFGIDTEPTWAPDGKSIYFTS 310 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCe----------------------EECccCCCCccceEECCCCCEEEEEE
Confidence 89999998775 455666 488888764321 11112233456789999999888876
Q ss_pred c-CCe--EEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC---cEEEEECCCCceE
Q 003360 366 D-QGY--VYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS---SVLVLDSDNGNML 432 (826)
Q Consensus 366 ~-dG~--V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg---~V~iwd~~tg~~i 432 (826)
. +|. |+++|+.++...... . .........|+| |+.+|+..+.++ .|.+||+.+|+..
T Consensus 311 d~~g~~~iy~~dl~~g~~~~lt-~---~g~~~~~~~~Sp------DG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 311 DRGGRPQIYRVAASGGSAERLT-F---QGNYNARASVSP------DGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCCCceEEEEECCCCCeEEee-c---CCCCccCEEECC------CCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 4 444 777777666543111 1 112344578888 688887765443 6999999877654
No 241
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.66 E-value=7.2e-08 Score=116.40 Aligned_cols=215 Identities=16% Similarity=0.185 Sum_probs=144.6
Q ss_pred CCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEec
Q 003360 141 NKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLA 219 (826)
Q Consensus 141 ~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~ 219 (826)
+.+..++.+.++.+|.+.+|.-+. . .+.+.....+. +.|+.+.|+..|.....+. ||.+.+|.
T Consensus 2216 sHp~~~~Yltgs~dgsv~~~~w~~-------~--------~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2216 SHPSDPYYLTGSQDGSVRMFEWGH-------G--------QQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred CCCCCceEEecCCCceEEEEeccC-------C--------CeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecc
Confidence 445567778888899988876654 1 11122222333 8899999999998887776 99999997
Q ss_pred cCCCceeecccccCCcceeeCCCCCEEEEEE---CCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCC
Q 003360 220 KSVPPLLDFETKLKDGSQSHSKVKNLFITGH---SDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS 295 (826)
Q Consensus 220 ~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs---~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~ 295 (826)
..-.++... ..|..+...|-=-+.+++|++ .++.+.+||. -.+...++. ..|...++++++.|..
T Consensus 2280 ~~pk~~~s~-qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~----------~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2280 ASPKPYTSW-QCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH----------TCHDGGATVLAYAPKH 2348 (2439)
T ss_pred cCCcceecc-ccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee----------eecCCCceEEEEcCcc
Confidence 763333333 456666666322236677764 5789999998 222222211 4688899999999999
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEec
Q 003360 296 RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 296 ~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~ 375 (826)
++|++|+.+|.|++||++..+.. |.-+. +. ...++++|+..|.++||++
T Consensus 2349 qllisggr~G~v~l~D~rqrql~--------------------------h~~~~----~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLR--------------------------HTFQA----LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHH--------------------------HHhhh----hh-hhheeeccCcccceEEEEc
Confidence 99999999999999999843321 11111 33 3457999999999999999
Q ss_pred CCCeeEEeeecccCCCCCee----EEEEeecccCCCCCcEEEEEECCCc
Q 003360 376 EGPTVLYQKHIASDISSGIV----SLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~V~----sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
.....++++.....+++-.. .+... -.+.|++|+.||+
T Consensus 2398 s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-------~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2398 SEFGLLHTFPSEHAKQGFFRNIGMQINVG-------QCNRIFSCGADGT 2439 (2439)
T ss_pred cccchhhcCchhhcccchhhhcCceeeec-------cCceEEEecCCCC
Confidence 99988866654333222111 11112 1577888888874
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.2e-05 Score=86.04 Aligned_cols=223 Identities=14% Similarity=0.153 Sum_probs=137.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCC--CeEEE---ecC---CcEEE
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGN--SFILS---SAD---EDYSL 217 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~--~~l~~---~~d---~~i~~ 217 (826)
..+.+..-.+++++|+..... ...-..|.+.|+...++|.+ ..+++ +.+ ..+++
T Consensus 137 Esl~arlv~nev~f~~~~~f~------------------~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri 198 (566)
T KOG2315|consen 137 ESLAARLVSNEVQFYDLGSFK------------------TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRI 198 (566)
T ss_pred hhhhhhhhcceEEEEecCCcc------------------ceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEE
Confidence 444555566788898887621 11124677889999998873 33443 223 45888
Q ss_pred eccCCCceeec----ccccCCccee-eCCCCC-EEEEEE--CCC---------cEEEEeCCCCceeeeeecccccccccc
Q 003360 218 LAKSVPPLLDF----ETKLKDGSQS-HSKVKN-LFITGH--SDG---------AINFWDVSCPLFLLILSLKQQSEKDFS 280 (826)
Q Consensus 218 w~~~~~~~~~~----~~~h~g~V~~-~s~~~~-~l~Tgs--~DG---------tVriWD~s~~~~~~i~~l~~~~~~~~~ 280 (826)
|.......... ..-....|.- |.+-|+ +|+.++ -|. ++.+.++.+... .+.
T Consensus 199 ~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~------------~V~ 266 (566)
T KOG2315|consen 199 YKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV------------SVP 266 (566)
T ss_pred eccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE------------EEe
Confidence 85331100000 0001111222 555444 333222 232 444444432220 011
Q ss_pred c-CCCCeEEEEEeCCCCEEEEE--eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC
Q 003360 281 L-SGIPLTALYYDGTSRVLVSG--DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN 357 (826)
Q Consensus 281 ~-h~~~V~~l~fsp~~~~Lasg--s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 357 (826)
+ ..++|.++.|+|+++.|++. -.=..|.|||++.. ..+....++=.++-|+|.
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------------------------~v~df~egpRN~~~fnp~ 322 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------------------------PVFDFPEGPRNTAFFNPH 322 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------------------------EeEeCCCCCccceEECCC
Confidence 2 23799999999999988774 44568999999832 334445777889999999
Q ss_pred CCEEEEEec---CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC------CCcEEEEECCC
Q 003360 358 SQHLAVGSD---QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK------DSSVLVLDSDN 428 (826)
Q Consensus 358 g~~lasGs~---dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~------Dg~V~iwd~~t 428 (826)
|++++.++- -|.|-|||..+.+++-..... .-+-..|+| ||.++++++. |..++||+..
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-----~tt~~eW~P------dGe~flTATTaPRlrvdNg~Kiwhyt- 390 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-----NTTVFEWSP------DGEYFLTATTAPRLRVDNGIKIWHYT- 390 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccchhhccccccC-----CceEEEEcC------CCcEEEEEeccccEEecCCeEEEEec-
Confidence 998887653 588999999998887443321 234478998 7999999986 6789999976
Q ss_pred CceEEe
Q 003360 429 GNMLST 434 (826)
Q Consensus 429 g~~i~~ 434 (826)
|..+..
T Consensus 391 G~~l~~ 396 (566)
T KOG2315|consen 391 GSLLHE 396 (566)
T ss_pred Cceeeh
Confidence 776644
No 243
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=6.4e-06 Score=93.52 Aligned_cols=157 Identities=16% Similarity=0.093 Sum_probs=98.1
Q ss_pred cCCccee--eCCCCCEEEEEEC---CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCC
Q 003360 232 LKDGSQS--HSKVKNLFITGHS---DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSG 305 (826)
Q Consensus 232 h~g~V~~--~s~~~~~l~Tgs~---DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg 305 (826)
+.+.+.+ |+|+|+.|+..+. +..|.+||+.+.....+..+ ...+..+.|+||++.|+.. +.+|
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-----------~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-----------PRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-----------CCCcCCeEECCCCCEEEEEEcCCC
Confidence 3444555 9999998886542 45789999955442221111 1234468999999988754 4455
Q ss_pred --cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC-C--eEEEEecCCCee
Q 003360 306 --MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ-G--YVYLLDTEGPTV 380 (826)
Q Consensus 306 --~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d-G--~V~vwD~~~~~~ 380 (826)
.|.+||+.++.. .+.......+....|+|+|+.|+..+.+ | .|.++|+.++..
T Consensus 266 ~~~I~~~d~~tg~~----------------------~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 266 SLNLYVMDLASGQI----------------------RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CcEEEEEECCCCCE----------------------EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 477788764321 1112223457889999999999887764 3 455557766654
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC---CcEEEEECCCCce
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD---SSVLVLDSDNGNM 431 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D---g~V~iwd~~tg~~ 431 (826)
.. .. ..........|+| |+.+|+..+.+ ..|.+||+.+|+.
T Consensus 324 ~~-lt---~~~~~~~~~~~Sp------DG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 324 QR-IT---WEGSQNQDADVSS------DGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred EE-ee---cCCCCccCEEECC------CCCEEEEEEccCCCceEEEEECCCCCe
Confidence 31 11 1222345677888 68888776544 3588899987764
No 244
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=8.8e-06 Score=92.44 Aligned_cols=161 Identities=12% Similarity=0.083 Sum_probs=100.4
Q ss_pred ccCCccee--eCCCCCEEEEEECC---CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE-EEeCC
Q 003360 231 KLKDGSQS--HSKVKNLFITGHSD---GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV-SGDQS 304 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~Tgs~D---GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La-sgs~d 304 (826)
.+.+.+.+ |+|+|+.|+..+.+ ..|.+||+.++....+.. ....+.+.+|+||++.|+ +.+.+
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-----------~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-----------FKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-----------CCCCccceEECCCCCEEEEEEccC
Confidence 34555655 99999988877643 359999995554322111 113456889999998886 56788
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-CCeEEEEec--CCCeeE
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QGYVYLLDT--EGPTVL 381 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~--~~~~~l 381 (826)
|...||.+..... .. .+...+.+.+....|+|||+.|+..+. +|...||.+ .++...
T Consensus 262 g~~~Iy~~d~~~~---------------~~-----~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 262 GNSQIYTVNADGS---------------GL-----RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ 321 (427)
T ss_pred CCceEEEEECCCC---------------Cc-----EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE
Confidence 8888887752211 01 111122334567889999998887664 455566654 444332
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC---cEEEEECCCCceE
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS---SVLVLDSDNGNML 432 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg---~V~iwd~~tg~~i 432 (826)
. ... . ........|+| |+++|+..+.++ .|.+||..+|+..
T Consensus 322 ~-lt~-~--g~~~~~~~~Sp------DG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 322 R-VTF-T--GSYNTSPRISP------DGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred E-Eec-C--CCCcCceEECC------CCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 1 111 1 12233567888 688888777654 6999999877643
No 245
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=5.7e-06 Score=94.30 Aligned_cols=172 Identities=12% Similarity=0.088 Sum_probs=107.2
Q ss_pred EEEeccCCCceeecccccCCccee--eCCCCCEEEEEEC---CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEE
Q 003360 215 YSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHS---DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTAL 289 (826)
Q Consensus 215 i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~---DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l 289 (826)
+.+|+........+ ..|.+.+.+ |+|+|+.|+..+. +..|.+||+.+..... + ..+...+...
T Consensus 184 l~~~d~dg~~~~~l-t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---l--------~~~~g~~~~~ 251 (435)
T PRK05137 184 LAIMDQDGANVRYL-TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---V--------GNFPGMTFAP 251 (435)
T ss_pred EEEECCCCCCcEEE-ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---e--------ecCCCcccCc
Confidence 34444433333333 455666766 9999998887764 4689999995544222 1 1223456788
Q ss_pred EEeCCCCEEE-EEeCCCc--EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec
Q 003360 290 YYDGTSRVLV-SGDQSGM--VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD 366 (826)
Q Consensus 290 ~fsp~~~~La-sgs~dg~--V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~ 366 (826)
+|+|+++.|+ +.+.+|. |.+||+.++.. .+...+.+..+..+|+|||+.|+..+.
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~----------------------~~Lt~~~~~~~~~~~spDG~~i~f~s~ 309 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT----------------------TRLTDSPAIDTSPSYSPDGSQIVFESD 309 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCce----------------------EEccCCCCccCceeEcCCCCEEEEEEC
Confidence 9999998775 5566665 55556653321 112223344677899999999988774
Q ss_pred -CC--eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC---CcEEEEECCCCc
Q 003360 367 -QG--YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD---SSVLVLDSDNGN 430 (826)
Q Consensus 367 -dG--~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D---g~V~iwd~~tg~ 430 (826)
+| .|++||+.++.... .. .....+....|+| |+..|+..+.+ ..|.+||..++.
T Consensus 310 ~~g~~~Iy~~d~~g~~~~~-lt---~~~~~~~~~~~Sp------dG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 310 RSGSPQLYVMNADGSNPRR-IS---FGGGRYSTPVWSP------RGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred CCCCCeEEEEECCCCCeEE-ee---cCCCcccCeEECC------CCCEEEEEEcCCCceEEEEEECCCCc
Confidence 33 68888987765431 11 1233455677888 68888776643 367888876443
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.61 E-value=1.2e-05 Score=91.29 Aligned_cols=201 Identities=10% Similarity=0.051 Sum_probs=120.7
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--C--CcEEEeccCCCceeecccccCCccee--eCCCCCEEE-EEECCC--cEEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--D--EDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI-TGHSDG--AINFW 258 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d--~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DG--tVriW 258 (826)
+..+...+...+|+|+++.++... + ..+.+|+......... ..+.+.+.+ |+|+++.|+ +...++ .|.+|
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 345566788889999999998865 2 3577776554333322 233444444 999998665 555555 48888
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCc--EEEEEeCCCCCccccceEEEeecCCCCeE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGM--VRIFKLKYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~--V~iwd~~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
|+.+..... +. .+...+....|+|+++.|+..+. ++. |.+|++.++..
T Consensus 264 d~~~~~~~~---l~--------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~------------------ 314 (417)
T TIGR02800 264 DLDGKQLTR---LT--------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV------------------ 314 (417)
T ss_pred ECCCCCEEE---CC--------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE------------------
Confidence 885444211 21 22233456789999998876554 444 55555542211
Q ss_pred EEEEEEEeeccCCeEEEEEccCCCEEEEEecCC---eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 336 IIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG---YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 336 ~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG---~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
.........+....|+|+|.+++.++.++ .|.+||+.++....... . .......|+| |+..|
T Consensus 315 ----~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~---~--~~~~~p~~sp------dg~~l 379 (417)
T TIGR02800 315 ----RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD---T--GLDESPSFAP------NGRMI 379 (417)
T ss_pred ----EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC---C--CCCCCceECC------CCCEE
Confidence 11112234567789999999999988876 89999998765431111 1 1223456777 57777
Q ss_pred EEEECCC---cEEEEECCCCceEEe
Q 003360 413 VIATKDS---SVLVLDSDNGNMLST 434 (826)
Q Consensus 413 ~sgs~Dg---~V~iwd~~tg~~i~~ 434 (826)
+..+.++ .+++.+.. |+....
T Consensus 380 ~~~~~~~~~~~l~~~~~~-g~~~~~ 403 (417)
T TIGR02800 380 LYATTRGGRGVLGLVSTD-GRFRAR 403 (417)
T ss_pred EEEEeCCCcEEEEEEECC-CceeeE
Confidence 7766654 35555544 544433
No 247
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.60 E-value=0.00034 Score=77.16 Aligned_cols=215 Identities=13% Similarity=0.182 Sum_probs=127.8
Q ss_pred cCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCC-ceeec--ccccC-----------Cccee--eCCCCCEEEEEE-C
Q 003360 191 LDSSITAMKLITGNSFILSSA--DEDYSLLAKSVP-PLLDF--ETKLK-----------DGSQS--HSKVKNLFITGH-S 251 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~-~~~~~--~~~h~-----------g~V~~--~s~~~~~l~Tgs-~ 251 (826)
.......+++++++++++++. ++.+.+++.... .+... ...|. ....+ ++|+++++++.. .
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 334556788999999999987 788888854321 11111 11111 11122 899999777653 3
Q ss_pred CCcEEEEeCCCCc--eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEee
Q 003360 252 DGAINFWDVSCPL--FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 252 DGtVriWD~s~~~--~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
...|.+|++.... +.....+. ...+..-+.+.|+|+++++.+..+ +++|.+|++..... .+.
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~-------~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g----~~~---- 229 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIK-------VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG----SLT---- 229 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEE-------CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT----EEE----
T ss_pred CCEEEEEEEeCCCceEEEeeccc-------cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC----cee----
Confidence 4589999984333 32222222 123467899999999988766554 67899999873211 000
Q ss_pred cCCCCeEEEEEEEEee--c--cCCeEEEEEccCCCEEEEEe-cCCeEEEEecC--CCeeEEeeecccCCCCCeeEEEEee
Q 003360 329 SKKGNSHIIHSVKVMK--I--NGSIISLNMNRNSQHLAVGS-DQGYVYLLDTE--GPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~--~--~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~--~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
.+..+.... . ......|+++|+|++|.++. .+.+|.+|++. ++.+....... ........+.+++
T Consensus 230 -------~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~ 301 (345)
T PF10282_consen 230 -------EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSP 301 (345)
T ss_dssp -------EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-T
T ss_pred -------EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeC
Confidence 000011111 1 12578899999999887766 56789999993 34443222221 2234578899988
Q ss_pred cccCCCCCcEEEEEE-CCCcEEEEEC--CCCceEEe
Q 003360 402 CSLQGFEKNFLVIAT-KDSSVLVLDS--DNGNMLST 434 (826)
Q Consensus 402 ~~~~~~d~~~l~sgs-~Dg~V~iwd~--~tg~~i~~ 434 (826)
++.+|+++. .++.|.+|+. .+|.+...
T Consensus 302 ------~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 302 ------DGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp ------TSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred ------CCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 699999887 4567888754 67765544
No 248
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1e-06 Score=93.49 Aligned_cols=338 Identities=17% Similarity=0.114 Sum_probs=191.0
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec---ccccCCccee--eCCCCCEEEEEEC-CCcEEEEeC-C
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF---ETKLKDGSQS--HSKVKNLFITGHS-DGAINFWDV-S 261 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~---~~~h~g~V~~--~s~~~~~l~Tgs~-DGtVriWD~-s 261 (826)
.|...|+.+. -.-..++.+++ |+.++.|....-....+ ...|.+-+.+ .+.++.++.|+.. |..+|++|+ .
T Consensus 7 mhrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 4777777774 34456778888 99999996543222222 2446666666 6778888899777 999999987 3
Q ss_pred CCceeeee--ecc----------------------------------c-ccccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 262 CPLFLLIL--SLK----------------------------------Q-QSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 262 ~~~~~~i~--~l~----------------------------------~-~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
......+. .+. . +..-.-..|..+|.++.+.+.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 32210100 000 0 0000013466899999999999999999999
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCC-CeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEe
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKG-NSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~-~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
|.|..|.....-...... +.+.... +.. +.+.+.++..+++.|+|+|..+++-+.|..|++++.++++++..
T Consensus 166 gmVEyWs~e~~~qfPr~~---l~~~~K~eTdL----y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTN---LNFELKHETDL----YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred ceeEeecCCCcccCcccc---ccccccccchh----hcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 999999987411100000 0111000 000 33344567789999999999999999999999999999887632
Q ss_pred eecc-----------------------------cCC-CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 384 KHIA-----------------------------SDI-SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 384 ~~~~-----------------------------~~~-~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
.... ..| ...-+.+.|.. ++++|+.|+--| |+++++.|+.++.
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde------s~~flly~t~~g-ikvin~~tn~v~r 311 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE------SGNFLLYGTILG-IKVINLDTNTVVR 311 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC------CCCEEEeeccee-EEEEEeecCeEEE
Confidence 2110 001 11234455655 489999998877 9999999999888
Q ss_pred eeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc--ccccccceeeee
Q 003360 434 TNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS--HAVQGVKKVLYK 511 (826)
Q Consensus 434 ~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~--~~~~g~~k~~~k 511 (826)
.+ +... ..+.+.+....+..+. ............+.-. ...++.+++|+-+.-|+|-+. .........++.
T Consensus 312 i~-gk~e-~ir~~~~sl~q~~~k~----~~~~~~~~a~~np~~~-~~~dpt~~c~a~kk~rfylf~ep~~~~~~~dvfne 384 (558)
T KOG0882|consen 312 IL-GKDE-AIRFTRLSLYQGAQKS----NLAALEVAASNNPLLE-FQKDPTIVCTAFKKNRFYLFREPEFTESDRDVFNE 384 (558)
T ss_pred Ee-ccch-hhhhhhHHHHhhhhhc----cchhhhhhhccCcccc-cCCCCeEEEeeeecceEEEEecCCCCcchhhhhcc
Confidence 76 3322 2222222222221111 0000000111111111 344678888887655555442 111112222222
Q ss_pred eecCCCCceeeEeeee--CCceEEEEEEeeceEEEeccCCc
Q 003360 512 KKFHSSSCCWASTFYS--GSDVGLMLLFTSGKFEIRSLPEL 550 (826)
Q Consensus 512 ~~~~~~~c~~~~~~~~--~~~~~lv~~~~~G~I~i~slP~L 550 (826)
....+ ..-.+..... ..+...++...-|+|.++-+|+-
T Consensus 385 ~p~~~-~~~~~~~~~g~~~l~~~aiihtt~gdi~~kl~p~e 424 (558)
T KOG0882|consen 385 KPLKE-ELMEARQEEGNKLLGKAAIIHTTQGDIHIKLYPEE 424 (558)
T ss_pred CcChh-HhhhhhhccCceecccceEEEecccceEEEecccc
Confidence 11110 0000000001 23455677788899999988863
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.59 E-value=9.4e-07 Score=90.81 Aligned_cols=231 Identities=13% Similarity=0.146 Sum_probs=142.5
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEecc-CCCc----eeecccccCCc------------cee--eCCCC--CEEEEEE
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAK-SVPP----LLDFETKLKDG------------SQS--HSKVK--NLFITGH 250 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~-~~~~----~~~~~~~h~g~------------V~~--~s~~~--~~l~Tgs 250 (826)
.-|+++.|...|.+|++|. +|.|.++.. +... +.+....|... |.. |.+.+ ..++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 5689999999999999999 899888832 2111 22222233322 222 55544 4677788
Q ss_pred CCCcEEEEeCCCCceee-------------eeeccccc-------------ccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 251 SDGAINFWDVSCPLFLL-------------ILSLKQQS-------------EKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 251 ~DGtVriWD~s~~~~~~-------------i~~l~~~~-------------~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
.|.+|++|-+..+.... +..|+-.. ..--..|..-|.+|+++.|...++++ .|
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd 184 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD 184 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence 99999999883221100 00010000 00124577889999999999999877 56
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeE--
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVL-- 381 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l-- 381 (826)
=.|.+|++..... ++.-+..-+ .....+..-|++..|+|. ...++..+..|+|++.|+|+..+.
T Consensus 185 LRINLWnlei~d~----sFnIVDIKP---------~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 185 LRINLWNLEIIDQ----SFNIVDIKP---------ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred eeeeeccccccCC----ceeEEEccc---------cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 6899999974321 111000000 001111334899999984 567888899999999999976543
Q ss_pred ----Eeeec-------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC-CCCceEEeeeccCCCCCc
Q 003360 382 ----YQKHI-------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS-DNGNMLSTNLIHPKKPSR 444 (826)
Q Consensus 382 ----~~~~~-------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~-~tg~~i~~~~~~~~~~~~ 444 (826)
+.... ..+.-+.|..+.|+. +|+++++-. --+|++||+ ...+.+.++.+|......
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~------sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSH------SGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEcc------CCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHH
Confidence 11110 011224578889998 488887643 358999999 456788888777654333
No 250
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.58 E-value=2.5e-07 Score=111.91 Aligned_cols=196 Identities=15% Similarity=0.218 Sum_probs=143.7
Q ss_pred cCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCcee
Q 003360 191 LDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFL 266 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~ 266 (826)
+-..|.++.-+|..++.++|+ |+.+++|..+.+ .+..+...-...|+. |+..|+.+..+-.||.+.+|.++.+..
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~- 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY- 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcce-
Confidence 346788888899999999988 999999965433 333332322344544 899999999999999999999963321
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEE---eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG---DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg---s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
+.+ .-|....+...|-. ..++++ +.++.|.+||....... . +...
T Consensus 2286 ----~s~------qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~---------------s-----~v~~ 2333 (2439)
T KOG1064|consen 2286 ----TSW------QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN---------------S-----LVHT 2333 (2439)
T ss_pred ----ecc------ccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc---------------c-----eeee
Confidence 221 24666667777755 456665 34678999997643221 1 2224
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.|.+.++++++-|..+.+++|+.+|.|++||+++.+++++++. +.. ..++++|+..|.++|
T Consensus 2334 ~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------------~~~-------~~~f~~~ss~g~ikI 2394 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------------LDT-------REYFVTGSSEGNIKI 2394 (2439)
T ss_pred ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------------hhh-------hheeeccCcccceEE
Confidence 5678899999999999999999999999999999988855442 121 678999999999999
Q ss_pred EECCCCceEEeeecc
Q 003360 424 LDSDNGNMLSTNLIH 438 (826)
Q Consensus 424 wd~~tg~~i~~~~~~ 438 (826)
|++..-..+.+++..
T Consensus 2395 w~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2395 WRLSEFGLLHTFPSE 2409 (2439)
T ss_pred EEccccchhhcCchh
Confidence 999987777776543
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.57 E-value=6.2e-06 Score=90.81 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=110.6
Q ss_pred CCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 240 SKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 240 s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
+.+-..++-|...|.|.+|+..+..+ -+.+. -..|.+.|+++.++.+-..|.+++.|+.|..|++.....
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~i--t~~~s------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-- 136 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEI--TAKLS------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-- 136 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeE--EEEEe------cCCCCCcceeeecccccCceEecCCceeEEEEeccccee--
Confidence 44455888999999999999955552 12222 135779999999999999999999999999999973211
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
. ......+..+.+++++|||..+++|+ +.|++||+.+++++.++. +|.++|.++.|
T Consensus 137 ---------------~----~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft---gh~s~v~t~~f 192 (541)
T KOG4547|consen 137 ---------------I----RIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT---GHGSPVRTLSF 192 (541)
T ss_pred ---------------e----eeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec---CCCcceEEEEE
Confidence 0 11122244589999999999999876 569999999999996664 99999999999
Q ss_pred eecccCCCCCcEEEEE-ECCCcEEEEECC
Q 003360 400 ETCSLQGFEKNFLVIA-TKDSSVLVLDSD 427 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sg-s~Dg~V~iwd~~ 427 (826)
... ..+..|.+++++ ..+.-+.+|-..
T Consensus 193 ~~~-~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 193 TTL-IDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEe-ccccccceeeeccccccceeEEEEE
Confidence 874 233235555543 333345555443
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.54 E-value=2e-05 Score=86.92 Aligned_cols=164 Identities=14% Similarity=0.135 Sum_probs=117.9
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEE--------------------eCCCCEEEE
Q 003360 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY--------------------DGTSRVLVS 300 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f--------------------sp~~~~Las 300 (826)
+...++|....||.+||||.....++.-+.- .... .+..++..| +.+...++-
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p----~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAP----IASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeecc----chhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence 4456788888888899998844442221110 0000 012222222 234557888
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
|...|.|.+|++..+.. ..+ +....|.+.|.++.++.+-..+.+++.|+.+..|+.....+
T Consensus 76 gt~~g~v~~ys~~~g~i----------------t~~---~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEI----------------TAK---LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred ecCCccEEEEEecCCeE----------------EEE---EecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence 99999999999884432 111 44567889999999999999999999999999999998887
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
+.... .....+.+++.+| |+..|++++ +.|++||+++++.+.+|++|...
T Consensus 137 ~~~~~---~~~~~~~sl~is~------D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~ 186 (541)
T KOG4547|consen 137 IRIWK---EQKPLVSSLCISP------DGKILLTAS--RQIKVLDIETKEVVITFTGHGSP 186 (541)
T ss_pred eeeec---cCCCccceEEEcC------CCCEEEecc--ceEEEEEccCceEEEEecCCCcc
Confidence 74443 4556788899998 688888775 68999999999999999888765
No 253
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=0.00043 Score=78.49 Aligned_cols=85 Identities=12% Similarity=0.168 Sum_probs=57.0
Q ss_pred EEEEEeCCCcEEEEEeCCCC-----CccccceEEEeec-----------C----CC-Ce--EEEEEEEE------e----
Q 003360 297 VLVSGDQSGMVRIFKLKYEP-----HAIENSFLSFTGS-----------K----KG-NS--HIIHSVKV------M---- 343 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~-----~~~~~~~~~i~~s-----------~----~~-~~--~~~~~~~~------~---- 343 (826)
++|+|...|+|.++|+.++. +.|...+..+.+. . .+ .. ..+-.++. .
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 68999999999999999873 3344444433321 1 01 00 11111111 1
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
.-..+|+.+..|..|++|++...+.-+-+||+++..++
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~l 556 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRML 556 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhccchHH
Confidence 12567999999999999999999999999999776544
No 254
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.51 E-value=1.7e-06 Score=91.09 Aligned_cols=160 Identities=13% Similarity=0.125 Sum_probs=113.4
Q ss_pred eCCCCCEEEEEECCCcEEEEeC--CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDV--SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~--s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
.++.++++|.+..+....+.++ +.+...++.... -...-+++.|..+.....++..-|.+.-+|.-.-.
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~---------v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC---------VPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee---------cccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence 6778888888888887777777 222111111111 11234566677776667777666666666654211
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeE
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 396 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~s 396 (826)
.+.+ .....|-.-++.++|+||++++.++..|..|+|-.+...-.+..+. .+|..-|..
T Consensus 141 --------------~~~~-----~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc--lGH~eFVS~ 199 (390)
T KOG3914|consen 141 --------------SGRC-----EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC--LGHKEFVST 199 (390)
T ss_pred --------------ccCc-----chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc--cccHhheee
Confidence 0111 3334556679999999999999999999999999887777664333 588889999
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
++..+ +..|+++|.|++|++||..+|+++.++
T Consensus 200 isl~~-------~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 200 ISLTD-------NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eeecc-------CceeeecCCCCcEEEEecccCCccccc
Confidence 98876 777999999999999999999998764
No 255
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.50 E-value=0.00015 Score=80.30 Aligned_cols=258 Identities=14% Similarity=0.139 Sum_probs=144.9
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccC
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKS 221 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~ 221 (826)
+..++++...+|.+.++|..+.+ ..-.++.. .....+++++||++++++. .+.+.+++..
T Consensus 47 Dgr~~yv~~rdg~vsviD~~~~~-----------------~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 47 DGRYLYVANRDGTVSVIDLATGK-----------------VVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp -SSEEEEEETTSEEEEEETTSSS-----------------EEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred CCCEEEEEcCCCeEEEEECCccc-----------------EEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence 34677888889999999998721 12222322 2356789999999999887 8899999865
Q ss_pred CCce-eecccc------cCCccee--eCCCCCEEEEEECC-CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEE
Q 003360 222 VPPL-LDFETK------LKDGSQS--HSKVKNLFITGHSD-GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY 291 (826)
Q Consensus 222 ~~~~-~~~~~~------h~g~V~~--~s~~~~~l~Tgs~D-GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f 291 (826)
.-.. .....+ ....+.+ .++.+..++..-.| +.|-+-|.+......+..+. .+.......|
T Consensus 109 tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~---------~g~~~~D~~~ 179 (369)
T PF02239_consen 109 TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK---------VGRFPHDGGF 179 (369)
T ss_dssp T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-----------TTEEEEEE
T ss_pred cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec---------cccccccccc
Confidence 4322 222111 1223444 56777756555554 77777777443321111221 2235567899
Q ss_pred eCCCCEEEEE-eCCCcEEEEEeCCCCC---------ccccceEEEe-------e--cCCCCeE-EEEE------------
Q 003360 292 DGTSRVLVSG-DQSGMVRIFKLKYEPH---------AIENSFLSFT-------G--SKKGNSH-IIHS------------ 339 (826)
Q Consensus 292 sp~~~~Lasg-s~dg~V~iwd~~~~~~---------~~~~~~~~i~-------~--s~~~~~~-~~~~------------ 339 (826)
+|++++++++ ..+..|-++|..++.. .++.....+. + +..+... ..-+
T Consensus 180 dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 180 DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp -TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred CcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC
Confidence 9999988775 4456788888776521 1111110000 0 0000000 0000
Q ss_pred --EEEeeccCCeEEEEEccCCCEEEEE----ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEE
Q 003360 340 --VKVMKINGSIISLNMNRNSQHLAVG----SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLV 413 (826)
Q Consensus 340 --~~~~~~~~~V~~l~~s~~g~~lasG----s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~ 413 (826)
++.....+.-.-+..+|++.+|.+. ...++|.|+|..+.+++.+.. ......+..++|++ ||..++
T Consensus 260 kvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~--~~~~~~~~h~ef~~------dG~~v~ 331 (369)
T PF02239_consen 260 KVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT--PGPGKRVVHMEFNP------DGKEVW 331 (369)
T ss_dssp SEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH--HHHT--EEEEEE-T------TSSEEE
T ss_pred eEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe--ccCCCcEeccEECC------CCCEEE
Confidence 3344444544778889999999988 556899999999998774433 22223488899998 688888
Q ss_pred EEECCC--cEEEEECCCCceEEeee
Q 003360 414 IATKDS--SVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 414 sgs~Dg--~V~iwd~~tg~~i~~~~ 436 (826)
++.+++ .|.+||..|.+.+..++
T Consensus 332 vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 332 VSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCEEEEEECCCcEEEEEEE
Confidence 777655 59999999999998865
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=5.2e-05 Score=85.90 Aligned_cols=203 Identities=12% Similarity=-0.005 Sum_probs=115.0
Q ss_pred cCCCEEEEEEeeCCCeEE---Eec-CCcEEEe--ccCCCceeecccccCCccee--eCCCCCEEEEEEC-----CCcEEE
Q 003360 191 LDSSITAMKLITGNSFIL---SSA-DEDYSLL--AKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHS-----DGAINF 257 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~---~~~-d~~i~~w--~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~-----DGtVri 257 (826)
....+..-+|+|||+.++ ++. ++.-.+| +........+ ....+.... |+|||+.|+..+. |..+.+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 344455668999998632 333 4544455 3322222222 122333333 9999987776543 334455
Q ss_pred EeCCC---CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 258 WDVSC---PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 258 WD~s~---~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
||+.. ..... +. ..+...+...+|+||++.|+..+ .+|...||.+..... .+.
T Consensus 262 ~~~~~g~~g~~~~---lt-------~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~-------------g~~ 318 (428)
T PRK01029 262 FSLETGAIGKPRR---LL-------NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE-------------GQS 318 (428)
T ss_pred eecccCCCCcceE---ee-------cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc-------------ccc
Confidence 77632 11101 11 01112345679999999777655 577777776542110 000
Q ss_pred eEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC---CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc
Q 003360 334 SHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ---GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN 410 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d---G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~ 410 (826)
. .........+....|||||++|+....+ ..|.+||+.+++..... .....+....|+| |+.
T Consensus 319 ~-----~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt----~~~~~~~~p~wSp------DG~ 383 (428)
T PRK01029 319 P-----RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT----TSPENKESPSWAI------DSL 383 (428)
T ss_pred e-----EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc----CCCCCccceEECC------CCC
Confidence 1 1111223456788999999999876643 36899999888765211 1123456678888 677
Q ss_pred EEEEEEC---CCcEEEEECCCCceE
Q 003360 411 FLVIATK---DSSVLVLDSDNGNML 432 (826)
Q Consensus 411 ~l~sgs~---Dg~V~iwd~~tg~~i 432 (826)
.|+..+. ...|++||+.+++..
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCEE
Confidence 7765443 346889998876643
No 257
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.47 E-value=3.6e-05 Score=87.27 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=100.7
Q ss_pred cCCccee--eCCCCCEEEEEECC---CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE-EEeCCC
Q 003360 232 LKDGSQS--HSKVKNLFITGHSD---GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV-SGDQSG 305 (826)
Q Consensus 232 h~g~V~~--~s~~~~~l~Tgs~D---GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La-sgs~dg 305 (826)
+...+.+ |+|+++.|+.+..+ ..|++||+....... +. .+...+.+++|+|+++.|+ +.+.++
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~--------~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---VA--------SFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---ee--------cCCCCccceEECCCCCEEEEEECCCC
Confidence 3444545 99999999887654 479999995443211 11 1224566789999998776 445555
Q ss_pred --cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC-C--eEEEEecCCCee
Q 003360 306 --MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ-G--YVYLLDTEGPTV 380 (826)
Q Consensus 306 --~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d-G--~V~vwD~~~~~~ 380 (826)
.|.+|++.++.. .....+........|+|+|++|+..+.. | .|+++|+.++..
T Consensus 257 ~~~i~~~d~~~~~~----------------------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 257 NPDIYVMDLDGKQL----------------------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred CccEEEEECCCCCE----------------------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 477777764321 1111122334567899999988876653 3 588888877664
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC---cEEEEECCCCce
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS---SVLVLDSDNGNM 431 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg---~V~iwd~~tg~~ 431 (826)
.. .. .+...+....|++ ++.+|+.++.++ .|.+||+.++..
T Consensus 315 ~~-l~---~~~~~~~~~~~sp------dg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 315 RR-LT---FRGGYNASPSWSP------DGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred EE-ee---cCCCCccCeEECC------CCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 31 11 2234456678888 588888888776 789999886543
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=0.00087 Score=70.44 Aligned_cols=209 Identities=10% Similarity=0.156 Sum_probs=129.1
Q ss_pred EEEEEeeCCCeEEEec--CCcEEEeccCC-Cceeec--ccccCCc----------cee--eCCCCCEEEEEE--CCCcEE
Q 003360 196 TAMKLITGNSFILSSA--DEDYSLLAKSV-PPLLDF--ETKLKDG----------SQS--HSKVKNLFITGH--SDGAIN 256 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~--d~~i~~w~~~~-~~~~~~--~~~h~g~----------V~~--~s~~~~~l~Tgs--~DGtVr 256 (826)
+.+++++++++++++. .+.|.++..+. +.+... ...|.++ +.. +.|++++|++.. .| .|.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~ 170 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIF 170 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEE
Confidence 7789999999999988 77888884432 111111 2334444 333 899999988874 44 688
Q ss_pred EEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeE
Q 003360 257 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
+|++..+.+.+ .....+ ..+..-+.|.|+|++++..+-.+ +++|.+|....... .+.
T Consensus 171 ~y~~~dg~L~~------~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g----~~~----------- 228 (346)
T COG2706 171 LYDLDDGKLTP------ADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG----KFE----------- 228 (346)
T ss_pred EEEcccCcccc------cccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc----eEE-----------
Confidence 99996444211 111111 23467789999999998877665 88999999985311 011
Q ss_pred EEEEEEEe----eccCCeEEEEEccCCCEEEEEec-CCeEEEEecC--CCeeEEeeecccCCCCCeeEEEEeecccCCCC
Q 003360 336 IIHSVKVM----KINGSIISLNMNRNSQHLAVGSD-QGYVYLLDTE--GPTVLYQKHIASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 336 ~~~~~~~~----~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~--~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d 408 (826)
.++.+... .......+|.++++|++|.++.. ...|.++.+. ++.+.+.... .-+........|.+ +
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~-~teg~~PR~F~i~~------~ 301 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT-PTEGQFPRDFNINP------S 301 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe-ccCCcCCccceeCC------C
Confidence 10001111 01345788999999998877653 2367777664 3443332222 22333456677777 4
Q ss_pred CcEEEEEECCC-cEEEE--ECCCCceEEe
Q 003360 409 KNFLVIATKDS-SVLVL--DSDNGNMLST 434 (826)
Q Consensus 409 ~~~l~sgs~Dg-~V~iw--d~~tg~~i~~ 434 (826)
+++|+++..++ +|.+| |..||++...
T Consensus 302 g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 302 GRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred CCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 89999988766 45555 5567765543
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.45 E-value=0.00075 Score=74.41 Aligned_cols=170 Identities=12% Similarity=0.169 Sum_probs=101.6
Q ss_pred CCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCc--eee---cccccCCccee--eCCCCCEEE-EEECCCcEEEEeCC
Q 003360 192 DSSITAMKLITGNSFILSSA--DEDYSLLAKSVPP--LLD---FETKLKDGSQS--HSKVKNLFI-TGHSDGAINFWDVS 261 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~--~~~---~~~~h~g~V~~--~s~~~~~l~-Tgs~DGtVriWD~s 261 (826)
.+...++.|+|+++++++.. ...|.+|+..... +.. +..+...+-.. |+|+++++. +.-.+++|.++++.
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 36678999999999998865 4456776443221 221 11222222222 999998664 55567889999984
Q ss_pred --CCceeeeeecccccccccccCC-CCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 262 --CPLFLLILSLKQQSEKDFSLSG-IPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 262 --~~~~~~i~~l~~~~~~~~~~h~-~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
...+..+..+..-.. .... .....|.++|++++|.++.. ++.|.+|++... ++....
T Consensus 223 ~~~g~~~~~~~~~~~~~---~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~---------------~g~l~~- 283 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPE---GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA---------------TGTLTL- 283 (345)
T ss_dssp TTTTEEEEEEEEESCET---TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT---------------TTTEEE-
T ss_pred ccCCceeEEEEeeeccc---cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC---------------CCceEE-
Confidence 444333332221100 1111 36889999999999888765 568999999522 111111
Q ss_pred EEEEEeeccC-CeEEEEEccCCCEEEEEe-cCCeEEEEec--CCCeeEE
Q 003360 338 HSVKVMKING-SIISLNMNRNSQHLAVGS-DQGYVYLLDT--EGPTVLY 382 (826)
Q Consensus 338 ~~~~~~~~~~-~V~~l~~s~~g~~lasGs-~dG~V~vwD~--~~~~~l~ 382 (826)
+......+ ..+.++++|+|++|+++. .++.|.+|++ .++.+..
T Consensus 284 --~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 284 --VQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp --EEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred --EEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 22222223 378999999999999887 5678999976 4666553
No 260
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=9.3e-07 Score=95.34 Aligned_cols=207 Identities=16% Similarity=0.195 Sum_probs=134.4
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC--------CceeecccccCCccee--eCCCCCEEEEEECCCcE
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV--------PPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAI 255 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~--------~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtV 255 (826)
...+|...|..++...+..-+++++ |+++++|..+. ....++ ..|+..|.+ |-.+-++++ +.||-|
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i~--ScD~gi 806 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLADLRSIA--SCDGGI 806 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeeccceee--eccCcc
Confidence 3467888888888877888888888 99999994321 122233 679999988 777766666 569999
Q ss_pred EEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeC--CCCEEEEE-eCCCcEEEEEeCCCCCccccceEEEeecCC
Q 003360 256 NFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG--TSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLSFTGSKK 331 (826)
Q Consensus 256 riWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp--~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~ 331 (826)
.+||. -+..+.. +... ...+++..+..-+ +..+++.| +...+|+++|-+.....
T Consensus 807 HlWDPFigr~Laq---~~da------pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~------------- 864 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQ---MEDA------PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT------------- 864 (1034)
T ss_pred eeecccccchhHh---hhcC------cccCCCceeEecccCcchheeeeccchhhheeeecccccce-------------
Confidence 99998 5544321 1110 1112333333333 33444444 77889999999854331
Q ss_pred CCeEEEEEEEEeec---cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCC
Q 003360 332 GNSHIIHSVKVMKI---NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 332 ~~~~~~~~~~~~~~---~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d 408 (826)
+. ++.... ++-+.+++..+.|+++|.|-.+|.|.+.|.++|+++...+.. ......+ ..++
T Consensus 865 ---~E---~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm---ecdllql-------aaps 928 (1034)
T KOG4190|consen 865 ---CE---LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM---ECDLLQL-------AAPS 928 (1034)
T ss_pred ---ee---EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc---cchhhhh-------cCch
Confidence 11 222222 345999999999999999999999999999999988333210 0001111 1113
Q ss_pred CcEEEEEECCCcEEE-EECCCCceEEe
Q 003360 409 KNFLVIATKDSSVLV-LDSDNGNMLST 434 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~i-wd~~tg~~i~~ 434 (826)
.+.|+....|.++.+ |....|....+
T Consensus 929 dq~L~~saldHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 929 DQALAQSALDHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred hHHHHhhcccceeEeeehhcCCeeeec
Confidence 667777778888888 88877765533
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=9.1e-05 Score=84.41 Aligned_cols=195 Identities=12% Similarity=0.065 Sum_probs=113.8
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--CC--cEEEeccCCCceeecccccCCccee--eCCCCCEEE-EEECCC--cEEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--DE--DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI-TGHSDG--AINFW 258 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d~--~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DG--tVriW 258 (826)
+..+...+...+|+|+++.++..+ ++ .+.+|+........+ ....+.+.. |+|+|+.|+ +...+| .|.+|
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 445667788999999999988755 33 355555443333332 222333333 999999776 555566 47777
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCc--EEEEEeCCCCCccccceEEEeecCCCCeE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGM--VRIFKLKYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~--V~iwd~~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
|+.+..... +. .+...+....|+|+++.++..+ .+|. |.+|++.++.. ..
T Consensus 273 d~~~~~~~~---lt--------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~------~~---------- 325 (430)
T PRK00178 273 DLASRQLSR---VT--------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA------ER---------- 325 (430)
T ss_pred ECCCCCeEE---cc--------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE------EE----------
Confidence 885554222 21 1223455678999998776555 4454 44445542211 10
Q ss_pred EEEEEEEeeccCCeEEEEEccCCCEEEEEecC-C--eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 336 IIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ-G--YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 336 ~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d-G--~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
+.. .........|+|+|+.|+..+.+ | .|.+||+.++....... . .......|+| |+..+
T Consensus 326 ----lt~--~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~---~--~~~~~p~~sp------dg~~i 388 (430)
T PRK00178 326 ----VTF--VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD---T--SLDESPSVAP------NGTML 388 (430)
T ss_pred ----eec--CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC---C--CCCCCceECC------CCCEE
Confidence 111 11223456899999999887653 3 58889998876442111 1 1122346777 57777
Q ss_pred EEEECC---CcEEEEECC
Q 003360 413 VIATKD---SSVLVLDSD 427 (826)
Q Consensus 413 ~sgs~D---g~V~iwd~~ 427 (826)
+..+.+ ..+.+++..
T Consensus 389 ~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 389 IYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EEEEecCCceEEEEEECC
Confidence 766644 246777775
No 262
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.42 E-value=4.6e-06 Score=85.97 Aligned_cols=165 Identities=17% Similarity=0.206 Sum_probs=111.6
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccC-----CCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC--C
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKS-----VPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV--S 261 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~-----~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~--s 261 (826)
.++++++.|.+..+.|..+. .+++.-+.-. ...... ...|.+.|.. |+...+++++.+.|..+. |-- +
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~-~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~ 145 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKD-YLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTES 145 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhh-hhhhhcceeeEEecCCceeEEEeccccceE-EEeecc
Confidence 35789999999999998888 6776655211 111111 2457777777 776777777777775543 321 1
Q ss_pred CCc--------------eeeee-------------eccc---ccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003360 262 CPL--------------FLLIL-------------SLKQ---QSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFK 311 (826)
Q Consensus 262 ~~~--------------~~~i~-------------~l~~---~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd 311 (826)
+.. ....+ .+.. +....+.+|.+.|++++|.|..+.|.+|..|..|.+||
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD 225 (404)
T ss_pred CCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence 100 00000 0000 11223567889999999999999999999999999999
Q ss_pred eCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC
Q 003360 312 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP 378 (826)
Q Consensus 312 ~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~ 378 (826)
+..+.. .. .....|+..|..+..-+.-+.+.++++||.|.+||+...
T Consensus 226 igg~~g---------------~~-----~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 226 IGGRKG---------------TA-----YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ccCCcc---------------ee-----eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 974422 22 444556778888888888888999999999999998654
No 263
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.42 E-value=4.6e-05 Score=76.26 Aligned_cols=200 Identities=15% Similarity=0.073 Sum_probs=133.7
Q ss_pred eCCCeEEEec-CCcEEEeccCCCceeec-ccccCCccee---eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccc
Q 003360 202 TGNSFILSSA-DEDYSLLAKSVPPLLDF-ETKLKDGSQS---HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSE 276 (826)
Q Consensus 202 ~~~~~l~~~~-d~~i~~w~~~~~~~~~~-~~~h~g~V~~---~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~ 276 (826)
-.+.+|+.|+ .+.+.+|.-........ ...|..+|.- ..-..--+..++.|.++++.+++++.. +.
T Consensus 82 ~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~------~~--- 152 (344)
T KOG4532|consen 82 NKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN------KF--- 152 (344)
T ss_pred ccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc------cc---
Confidence 3566777776 88899995443222211 2345555544 222233466678999999999966652 11
Q ss_pred cccccCC--CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEE
Q 003360 277 KDFSLSG--IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNM 354 (826)
Q Consensus 277 ~~~~~h~--~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~ 354 (826)
..|. -.+.+++++++++++++.+....|-.|.+......+.. .........=.+..|
T Consensus 153 ---~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~------------------~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 153 ---AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN------------------IYEAPTSDHGFYNSF 211 (344)
T ss_pred ---eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee------------------eEecccCCCceeeee
Confidence 1232 23789999999999999999999999998744322100 111112233467789
Q ss_pred ccCCCEEEEEecCCeEEEEecCCCeeEEe--eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 355 NRNSQHLAVGSDQGYVYLLDTEGPTVLYQ--KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 355 s~~g~~lasGs~dG~V~vwD~~~~~~l~~--~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
+.....+|+++.||++.|||++.-..... ......|.+.+..+.|++. +. -.+|+..-.-+.+.+.|+++++-.
T Consensus 212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~---g~-lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLY---GL-LDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCC---Cc-ceEEEEecCcceEEEEEcccCcee
Confidence 99888999999999999999987654421 1222358899999999973 21 356666666788999999998765
Q ss_pred Eee
Q 003360 433 STN 435 (826)
Q Consensus 433 ~~~ 435 (826)
...
T Consensus 288 q~I 290 (344)
T KOG4532|consen 288 QVI 290 (344)
T ss_pred eEE
Confidence 543
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=0.00011 Score=83.90 Aligned_cols=202 Identities=9% Similarity=0.035 Sum_probs=113.5
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--CCc--EEEeccCCCceeecccccCCccee--eCCCCCEEE-EEECCCc--EEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--DED--YSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFI-TGHSDGA--INFW 258 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d~~--i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DGt--VriW 258 (826)
+..+...+....|+|||+.++..+ ++. +.+|+........+ ....+.... |+|+|+.|+ +...+|. |.+|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 344556788899999999988765 444 44444433222222 111222223 999999665 5677776 6666
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEE--eCCCCCccccceEEEeecCCCCeE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFK--LKYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd--~~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
|+.+..... +. .+...+...+|+|+++.|+..+. +|...||. +.++. ..
T Consensus 292 dl~tg~~~~---lt--------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-----------------~~ 343 (448)
T PRK04792 292 DIATKALTR---IT--------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-----------------VS 343 (448)
T ss_pred ECCCCCeEE---Cc--------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-----------------EE
Confidence 775544211 21 23334567899999998766543 55555554 43221 11
Q ss_pred EEEEEEEeeccCCeEEEEEccCCCEEEEEec-CC--eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 336 IIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QG--YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 336 ~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG--~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
. +.. ........+|+|+|++++..+. ++ .|.++|+.++....... .. ......|+| |+..|
T Consensus 344 ~---Lt~--~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~---~~--~d~~ps~sp------dG~~I 407 (448)
T PRK04792 344 R---LTF--EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS---TR--LDESPSVAP------NGTMV 407 (448)
T ss_pred E---Eec--CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC---CC--CCCCceECC------CCCEE
Confidence 0 111 1112345689999999887655 34 46667887776432111 11 112235777 57776
Q ss_pred EEEEC-CC--cEEEEECCCCceEEee
Q 003360 413 VIATK-DS--SVLVLDSDNGNMLSTN 435 (826)
Q Consensus 413 ~sgs~-Dg--~V~iwd~~tg~~i~~~ 435 (826)
+..+. ++ .+++++.. |+....+
T Consensus 408 ~~~~~~~g~~~l~~~~~~-G~~~~~l 432 (448)
T PRK04792 408 IYSTTYQGKQVLAAVSID-GRFKARL 432 (448)
T ss_pred EEEEecCCceEEEEEECC-CCceEEC
Confidence 66554 33 36777764 6555443
No 265
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.37 E-value=5.8e-06 Score=82.23 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=106.8
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
++..+ ..|++.-++ .+-.++-+++|+.||.+-+.+... .++....+.. .| ..-.+.+++..+..+.++
T Consensus 81 ~~~~~-a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~-------~~-~~~as~~~~~~~~~i~s~ 150 (319)
T KOG4714|consen 81 PFKVL-AKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK-DLALMSRIPS-------IH-SGSASRKICRHGNSILSG 150 (319)
T ss_pred ceeee-eccCCCCCcccccccCCceEecCCCceEEEEechH-HHhhhhhccc-------cc-ccccccceeecccEEecC
Confidence 44444 245555555 666778899999999999999844 3212111110 01 111122333444444333
Q ss_pred eCCCc------EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEe
Q 003360 302 DQSGM------VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLD 374 (826)
Q Consensus 302 s~dg~------V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD 374 (826)
.-|. .+.|+++.... . ....+.-..|++++-+|.. ..+++|++||.+-+||
T Consensus 151 -~~g~~n~~d~~~a~~~~p~~t----------------~-----~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d 208 (319)
T KOG4714|consen 151 -GCGNWNAQDNFYANTLDPIKT----------------L-----IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWD 208 (319)
T ss_pred -CcceEeeccceeeeccccccc----------------c-----cccccccccchhhhCCcccccEEEEecCCCeEEEEE
Confidence 2232 33444441110 0 0011112239999999864 4678899999999999
Q ss_pred cCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 375 TEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
.++.... ..+...|..+++.+.|.|. ++..|++++.||.+.-||.. +.++.
T Consensus 209 ~rn~~~p--~S~l~ahk~~i~eV~FHpk-----~p~~Lft~sedGslw~wdas-~~~l~ 259 (319)
T KOG4714|consen 209 ARNVAMP--VSLLKAHKAEIWEVHFHPK-----NPEHLFTCSEDGSLWHWDAS-TTFLS 259 (319)
T ss_pred cccccch--HHHHHHhhhhhhheeccCC-----CchheeEecCCCcEEEEcCC-CceEE
Confidence 9988655 5556689999999999996 68899999999999999987 45554
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.30 E-value=2.8e-05 Score=78.83 Aligned_cols=154 Identities=12% Similarity=0.188 Sum_probs=107.2
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPH 317 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~ 317 (826)
|++.+.-++++-.+|.+.+-+.+...++. +...+.|..+.+...|+.. ..++.+|+.||.+..||++....
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~--------vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEK--------VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeee--------cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 88888889999999999965554433211 3345688899999999764 46889999999999999982110
Q ss_pred ccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecC-CCeeEEeeecccCCCCCee
Q 003360 318 AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTE-GPTVLYQKHIASDISSGIV 395 (826)
Q Consensus 318 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~-~~~~l~~~~~~~~~~~~V~ 395 (826)
..- -....|...|.++.-+| .+..+++|+.|-.|++||+| -++.++... ..+.|+
T Consensus 201 ----------------~i~---~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~----v~GGVW 257 (339)
T KOG0280|consen 201 ----------------FIW---HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK----VGGGVW 257 (339)
T ss_pred ----------------eee---ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc----cccceE
Confidence 000 11223566788888876 57789999999999999999 466664443 347899
Q ss_pred EEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 396 SLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
.+.+.|... ...|+++-..| ++|.+...
T Consensus 258 Ri~~~p~~~----~~lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 258 RIKHHPEIF----HRLLAACMHNG-AKILDSSD 285 (339)
T ss_pred EEEecchhh----hHHHHHHHhcC-ceEEEecc
Confidence 999999511 23344444343 66666654
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=0.0027 Score=71.57 Aligned_cols=149 Identities=16% Similarity=0.156 Sum_probs=87.2
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcc--ee-eCCCCCEEEEEECCCcEEEEeCCCCceee
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGS--QS-HSKVKNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V--~~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
.+.|..++|+.+|..+...- ||.|.+=......+... ..+|-. .+ |++|.+.++.+-.+|.+.++|..+...
T Consensus 115 KSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~-- 190 (1189)
T KOG2041|consen 115 KSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK--ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFE-- 190 (1189)
T ss_pred ccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch--hcchheccceeecccHHHHHhhhcCCcEEEecccccHH--
Confidence 34577788888888777655 66554432211111110 011111 12 899999999999999999999866542
Q ss_pred eeecccccc----cccccCCCCeEEEEEe--------CCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeE
Q 003360 268 ILSLKQQSE----KDFSLSGIPLTALYYD--------GTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 268 i~~l~~~~~----~~~~~h~~~V~~l~fs--------p~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
.+++.+.. ..+...+..|-.+.|. |+...|+++-..|.+.|-+-...+ .+.
T Consensus 191 -~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~----------------~Pv 253 (1189)
T KOG2041|consen 191 -RKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP----------------EPV 253 (1189)
T ss_pred -HhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC----------------CCe
Confidence 11221110 0011111235555553 577889999999988886654221 121
Q ss_pred EEEEEEEeeccCCeEEEEEccCCCEEEEEecC
Q 003360 336 IIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ 367 (826)
Q Consensus 336 ~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d 367 (826)
. +.. .-.|....|+++|..||+++.+
T Consensus 254 v---~dt---gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 254 V---VDT---GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred E---Eec---ccEeecceecCCCcEEEEccCc
Confidence 1 111 2458889999999999998765
No 268
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.00024 Score=80.94 Aligned_cols=158 Identities=12% Similarity=0.050 Sum_probs=95.9
Q ss_pred ccCCccee--eCCCCCEEEEEECC---CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE-EEeCC
Q 003360 231 KLKDGSQS--HSKVKNLFITGHSD---GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV-SGDQS 304 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~Tgs~D---GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La-sgs~d 304 (826)
.+...+.. |+|+|+.|+..+.+ ..|.+||+.+..... +. .....+...+|+|+++.|+ +.+.+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~---l~--------~~~g~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ---IT--------NFEGLNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE---cc--------CCCCCcCCeEECCCCCEEEEEEccC
Confidence 34455555 99999988776543 358888995544322 11 1112345689999998877 45556
Q ss_pred C--cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-CC--eEEEEecCCCe
Q 003360 305 G--MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QG--YVYLLDTEGPT 379 (826)
Q Consensus 305 g--~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG--~V~vwD~~~~~ 379 (826)
| .|.+||+.++.. .....+........|+|+|+.++..+. +| .|+++|+.+++
T Consensus 265 g~~~Iy~~d~~~~~~----------------------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 265 GNPEIYVMDLASRQL----------------------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred CCceEEEEECCCCCe----------------------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 5 466677764321 111112334566789999998887664 33 57788887776
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC-C--cEEEEECCCCce
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD-S--SVLVLDSDNGNM 431 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D-g--~V~iwd~~tg~~ 431 (826)
..... . .+ .......|+| |+..|+..+.+ + .|.+||+.+|+.
T Consensus 323 ~~~lt-~-~~--~~~~~~~~Sp------dg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 323 AERVT-F-VG--NYNARPRLSA------DGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred EEEee-c-CC--CCccceEECC------CCCEEEEEEccCCceEEEEEECCCCCE
Confidence 43111 1 11 1223456777 67887776643 3 578889887754
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.21 E-value=0.0011 Score=74.19 Aligned_cols=299 Identities=13% Similarity=0.118 Sum_probs=151.9
Q ss_pred CCeEEEec-CCcEEEeccCCCce-eecccccCCccee-eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeeccccccccc
Q 003360 204 NSFILSSA-DEDYSLLAKSVPPL-LDFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDF 279 (826)
Q Consensus 204 ~~~l~~~~-d~~i~~w~~~~~~~-~~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~ 279 (826)
+..++.++ ++.+..++...... ..+ ...+.+.+ ...++..++.++.||.+..||. ++..+ .....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~--~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~---W~~~~------ 133 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRV--DLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKEL---WRAKL------ 133 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeee--cCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEe---eeecc------
Confidence 44555555 67777776433222 221 11222322 2335677888899999999999 45442 22210
Q ss_pred ccCCCCeEE-EEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC
Q 003360 280 SLSGIPLTA-LYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS 358 (826)
Q Consensus 280 ~~h~~~V~~-l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 358 (826)
. ..+.+ ... .+..+++++.+|.|..||.+++... +.... .... ... ... .+.... +
T Consensus 134 --~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~-----W~~~~--~~~~-----~~~---~~~-~sp~~~-~- 190 (377)
T TIGR03300 134 --S-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERL-----WTYSR--VTPA-----LTL---RGS-ASPVIA-D- 190 (377)
T ss_pred --C-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCcee-----eEEcc--CCCc-----eee---cCC-CCCEEE-C-
Confidence 0 11111 111 2456777888999999998855321 00000 0000 000 000 011111 2
Q ss_pred CEEEEEecCCeEEEEecCCCeeEEeeecccCCCC-CeeE---EEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 359 QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISS-GIVS---LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 359 ~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~-~V~s---l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
..+++++.+|.+..+|..+++.++.......... .+.. +.-.|. ..+..+++++.+|.++.||..+|+.+-.
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~----~~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPV----VDGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccE----EECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 3688889999999999999998865432111100 0100 111111 1256788899999999999999987755
Q ss_pred eeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeee-e
Q 003360 435 NLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKK-K 513 (826)
Q Consensus 435 ~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~-~ 513 (826)
.... . ...+.. .++.+++...++.++.++.. ..+.+.+. .
T Consensus 267 ~~~~----~-~~~p~~-----------------------------~~~~vyv~~~~G~l~~~d~~-----tG~~~W~~~~ 307 (377)
T TIGR03300 267 RDAS----S-YQGPAV-----------------------------DDNRLYVTDADGVVVALDRR-----SGSELWKNDE 307 (377)
T ss_pred eccC----C-ccCceE-----------------------------eCCEEEEECCCCeEEEEECC-----CCcEEEcccc
Confidence 3210 0 000000 01223344445678888875 22233322 1
Q ss_pred cCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccccccccc--eeecCCCCCCCcccceeccCCCcEEE
Q 003360 514 FHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRG--FVYLTPKPNSLSNTLMCSSWDGELIM 586 (826)
Q Consensus 514 ~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~--~~~~~~~~~~~~~~~~~~s~~G~i~~ 586 (826)
+. ..+.....+ .+..+.+...+|.+.+.+..+.+++...++.. +...| - .-..+.+..+.||.++.
T Consensus 308 ~~-~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp-~--~~~~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 308 LK-YRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPP-V--VVGDGLLVQTRDGDLYA 375 (377)
T ss_pred cc-CCccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCC-E--EECCEEEEEeCCceEEE
Confidence 11 112111111 23456666788999998887788777654432 22221 0 11234555556666554
No 270
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=0.00029 Score=77.49 Aligned_cols=245 Identities=13% Similarity=0.178 Sum_probs=141.9
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEe------cCCc-----
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSS------ADED----- 214 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~------~d~~----- 214 (826)
..+++....+.+.+++..... .. +..-...+.++.|+|.+.+|.+- .++.
T Consensus 46 G~lfA~~~~~~v~i~~~~~~~-----------------~~--lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn 106 (566)
T KOG2315|consen 46 GRLFAYSDNQVVKVFEIATLK-----------------VV--LCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPN 106 (566)
T ss_pred CcEEEEEcCCeEEEEEccCCc-----------------EE--EEeccceeeeeeecccccccccccccccccCCCCCCCc
Confidence 345666677777777766521 11 11111267889999999988661 1222
Q ss_pred EEEeccCCCcee-ecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC-CceeeeeecccccccccccCCCCeEEEE
Q 003360 215 YSLLAKSVPPLL-DFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC-PLFLLILSLKQQSEKDFSLSGIPLTALY 290 (826)
Q Consensus 215 i~~w~~~~~~~~-~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~ 290 (826)
+.+|+....... .+....+.+ |+ |+.|..+.+ =-..+.|.||+... ... .. ..|...|+.+.
T Consensus 107 ~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~--~~----------kl~~~~i~~f~ 172 (566)
T KOG2315|consen 107 VLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTI--QH----------KLSVSGITMLS 172 (566)
T ss_pred eeeeeeccceehhheehhhhcC-cccccccchhhhh-hhhcceEEEEecCCccce--ee----------eeeccceeeEE
Confidence 456655441111 111222222 34 777766432 22346799999933 221 11 24556889999
Q ss_pred EeCCC--CEEEE-----EeCCCcEEEEEeCCCCC--cc-ccce-----EEEeecCCCCeEE-------------------
Q 003360 291 YDGTS--RVLVS-----GDQSGMVRIFKLKYEPH--AI-ENSF-----LSFTGSKKGNSHI------------------- 336 (826)
Q Consensus 291 fsp~~--~~Las-----gs~dg~V~iwd~~~~~~--~~-~~~~-----~~i~~s~~~~~~~------------------- 336 (826)
++|.. ..+|+ ++.-+.|+||....... .. ..++ -.+.+++.++.+.
T Consensus 173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~ 252 (566)
T KOG2315|consen 173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT 252 (566)
T ss_pred ecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence 99873 34443 46667899999873210 00 0000 0122222222110
Q ss_pred EEE--------EEEeeccCCeEEEEEccCCCE--EEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCC
Q 003360 337 IHS--------VKVMKINGSIISLNMNRNSQH--LAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQG 406 (826)
Q Consensus 337 ~~~--------~~~~~~~~~V~~l~~s~~g~~--lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~ 406 (826)
+|- ...+.-.++|.++.|+++|+- ++.|..=-.+.|+|++. .+++.+ ..++-.++-|+|.
T Consensus 253 Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df-----~egpRN~~~fnp~---- 322 (566)
T KOG2315|consen 253 LYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF-----PEGPRNTAFFNPH---- 322 (566)
T ss_pred EEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC-----CCCCccceEECCC----
Confidence 000 111222789999999999954 45577788999999964 455333 2346677899995
Q ss_pred CCCcEEEEEECC---CcEEEEECCCCceEEee
Q 003360 407 FEKNFLVIATKD---SSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 407 ~d~~~l~sgs~D---g~V~iwd~~tg~~i~~~ 435 (826)
|++|+.++-+ |.|-|||..+-+++..+
T Consensus 323 --g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 323 --GNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred --CCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 8888887754 68999999987777653
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.19 E-value=0.00018 Score=77.19 Aligned_cols=221 Identities=12% Similarity=0.148 Sum_probs=138.1
Q ss_pred CceEEEeccCccEEEecchh--HHHHHhhccCCCCCCCCccceeeecccCCCEEEEE-Ee-eCCCeEEEecCCcEEEecc
Q 003360 145 QDSFLLLGKSGHFYAFDDCQ--IERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMK-LI-TGNSFILSSADEDYSLLAK 220 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~--i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~-fs-~~~~~l~~~~d~~i~~w~~ 220 (826)
+.--+|....|.|++||..+ ++++-...+ ...... ++..-.++..+. |+ .+|.+++..+.|..-+.+.
T Consensus 277 DGkrIvFq~~GdIylydP~td~lekldI~lp----l~rk~k----~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~ 348 (668)
T COG4946 277 DGKRIVFQNAGDIYLYDPETDSLEKLDIGLP----LDRKKK----QPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRP 348 (668)
T ss_pred CCcEEEEecCCcEEEeCCCcCcceeeecCCc----cccccc----cccccCHHHhhhhhccCCCcEEEEEecCcEEEECC
Confidence 34458888999999999765 211111100 000000 000001111111 33 3677777777665555433
Q ss_pred CCCceeecccccCCccee--eCCCCCEEEEEECCC-cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE
Q 003360 221 SVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDG-AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 297 (826)
Q Consensus 221 ~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DG-tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~ 297 (826)
...... +.+|.++|.- +..+++-++.|..|| .+-|+|..+.+. ..+ ...-+.|.+|..+|+|..
T Consensus 349 ~~~~~i--qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~---kr~--------e~~lg~I~av~vs~dGK~ 415 (668)
T COG4946 349 WDGYSI--QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV---KRI--------EKDLGNIEAVKVSPDGKK 415 (668)
T ss_pred CCCeeE--EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE---EEe--------eCCccceEEEEEcCCCcE
Confidence 222222 3578888866 788888999999999 999999966652 111 223368999999999999
Q ss_pred EEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCC----eEEEE
Q 003360 298 LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG----YVYLL 373 (826)
Q Consensus 298 Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG----~V~vw 373 (826)
++++.....+.++|+.++... +.-..-.+-|+...|+|+++++|.+.-+| .|+++
T Consensus 416 ~vvaNdr~el~vididngnv~---------------------~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikly 474 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVR---------------------LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLY 474 (668)
T ss_pred EEEEcCceEEEEEEecCCCee---------------------EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEE
Confidence 999999999999999855321 11111134599999999999999876665 58999
Q ss_pred ecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 374 DTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 374 D~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
|+.++++.-... . ++-.|+|. ...|+++|...+.
T Consensus 475 dm~~~Kiy~vTT-~-------ta~DfsPa--FD~d~ryLYfLs~ 508 (668)
T COG4946 475 DMDGGKIYDVTT-P-------TAYDFSPA--FDPDGRYLYFLSA 508 (668)
T ss_pred ecCCCeEEEecC-C-------cccccCcc--cCCCCcEEEEEec
Confidence 999888763222 1 22345553 2226888877663
No 272
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.18 E-value=0.00043 Score=79.08 Aligned_cols=156 Identities=10% Similarity=0.087 Sum_probs=91.8
Q ss_pred CCccee--eCCCCCEEEEEEC-CC--cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE-EeCCCc
Q 003360 233 KDGSQS--HSKVKNLFITGHS-DG--AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS-GDQSGM 306 (826)
Q Consensus 233 ~g~V~~--~s~~~~~l~Tgs~-DG--tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las-gs~dg~ 306 (826)
...+.+ |+|+|+.|+..+. ++ .|.+||+.+.....+.... ......+|+|+++.|+. .+.+|.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-----------g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-----------GINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-----------CCcCCeeECCCCCEEEEEEeCCCC
Confidence 444544 9999998876654 33 4778888544422211111 22346799999997764 566776
Q ss_pred --EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-CC--eEEEEecCCCeeE
Q 003360 307 --VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QG--YVYLLDTEGPTVL 381 (826)
Q Consensus 307 --V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG--~V~vwD~~~~~~l 381 (826)
|.+||+.++.. .+...+.......+|+|||++++..+. +| .|.++|+.+++..
T Consensus 286 ~~Iy~~dl~tg~~----------------------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 286 PEIYVVDIATKAL----------------------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred eEEEEEECCCCCe----------------------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 55556553221 111112334567899999998887664 33 4777788777643
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC-C--cEEEEECCCCce
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD-S--SVLVLDSDNGNM 431 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D-g--~V~iwd~~tg~~ 431 (826)
... . .+ .......|+| |+.+|+..+.+ + .|.++|+.+|+.
T Consensus 344 ~Lt-~-~g--~~~~~~~~Sp------DG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 344 RLT-F-EG--EQNLGGSITP------DGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred EEe-c-CC--CCCcCeeECC------CCCEEEEEEecCCceEEEEEECCCCCe
Confidence 211 1 11 1223457777 68777766543 3 456678776654
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.13 E-value=0.0025 Score=71.27 Aligned_cols=195 Identities=15% Similarity=0.158 Sum_probs=103.8
Q ss_pred CCCeEEEec-CCcEEEeccCCCceeeccccc--CCccee-eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeeccccccc
Q 003360 203 GNSFILSSA-DEDYSLLAKSVPPLLDFETKL--KDGSQS-HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEK 277 (826)
Q Consensus 203 ~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h--~g~V~~-~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~ 277 (826)
++..++.+. ++.+..++....... |.+ .+.+.+ ..-.+..++.+..||.|..||. ++.. +...+....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~---W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~---~W~~~~~~~- 176 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKEL---WRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGER---LWTYSRVTP- 176 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEe---eeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCce---eeEEccCCC-
Confidence 355566655 888777765433322 221 222322 1113456777888999999999 4443 222221100
Q ss_pred ccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeec-CCCCeEEEEEEEEeeccCCeEEEEEcc
Q 003360 278 DFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS-KKGNSHIIHSVKVMKINGSIISLNMNR 356 (826)
Q Consensus 278 ~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s-~~~~~~~~~~~~~~~~~~~V~~l~~s~ 356 (826)
.+... .. .+.... +..++++..+|.|..+|.+++...- ..... +.+... .. .......+..+
T Consensus 177 ~~~~~-~~-~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W-----~~~~~~~~g~~~----~~--~~~~~~~~p~~-- 239 (377)
T TIGR03300 177 ALTLR-GS-ASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW-----EQRVALPKGRTE----LE--RLVDVDGDPVV-- 239 (377)
T ss_pred ceeec-CC-CCCEEE--CCEEEEECCCCEEEEEEccCCCEee-----eeccccCCCCCc----hh--hhhccCCccEE--
Confidence 00000 00 011111 2467788888999999987553211 00000 000000 00 00000001111
Q ss_pred CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 357 NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 357 ~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.+..+.+++.+|.++.||..+++.++..... . ..... . ++..+++++.||.|..+|..+|+.+-.
T Consensus 240 ~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~----~~~p~--~------~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 240 DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-S----YQGPA--V------DDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred ECCEEEEEEcCCEEEEEECCCCcEEEeeccC-C----ccCce--E------eCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 2457888889999999999999988655421 1 11111 1 367888899999999999999987754
No 274
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.11 E-value=0.0018 Score=66.18 Aligned_cols=214 Identities=13% Similarity=0.088 Sum_probs=128.0
Q ss_pred EEEeeCCCeEEEecCCcEEEecc--CCCceeecccccCCccee-----eCCCCCEEEEEECCCcEEEEeCCCCceeeeee
Q 003360 198 MKLITGNSFILSSADEDYSLLAK--SVPPLLDFETKLKDGSQS-----HSKVKNLFITGHSDGAINFWDVSCPLFLLILS 270 (826)
Q Consensus 198 ~~fs~~~~~l~~~~d~~i~~w~~--~~~~~~~~~~~h~g~V~~-----~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~ 270 (826)
++.+.+|+.||.--|..|-+-.. +.........-.++.-+. |+||+.+||.++..|+|+++|+.+..+ +.
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l---f~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL---FV 79 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee---EE
Confidence 45677888887776666555422 211111110112222222 999999999999999999999977663 44
Q ss_pred cccccccccccCCCCeEEEEEeCC------CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGT------SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~------~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
+........ .-..+|..|.|.+. ...|++-..+|.++=|-+..+....-...+. ..+..
T Consensus 80 I~p~~~~~~-d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hs--------------fsf~~ 144 (282)
T PF15492_consen 80 IPPAMSFPG-DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHS--------------FSFSS 144 (282)
T ss_pred cCcccccCC-ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEE--------------EEecc
Confidence 543211111 12267888888653 2367777788888888874332111011111 33332
Q ss_pred c-cCCeEEEEEccCCCEEEEEec----CC-------eEEEEecCCCeeEEeee--c------------------------
Q 003360 345 I-NGSIISLNMNRNSQHLAVGSD----QG-------YVYLLDTEGPTVLYQKH--I------------------------ 386 (826)
Q Consensus 345 ~-~~~V~~l~~s~~g~~lasGs~----dG-------~V~vwD~~~~~~l~~~~--~------------------------ 386 (826)
+ ...|+++.++|..++|++|+. ++ -+..|.+-+...-+..- .
T Consensus 145 ~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 145 HYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred cCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence 2 456899999998888877753 11 24566654432221100 0
Q ss_pred ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 387 ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 387 ~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.......|..|..+| |+..|++...+|.|.+|++.+-++....
T Consensus 225 ~~~~~d~i~kmSlSP------dg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSP------DGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred cccCCCceEEEEECC------CCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 011234566677777 7999999999999999999876666554
No 275
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.09 E-value=0.013 Score=63.80 Aligned_cols=212 Identities=14% Similarity=0.151 Sum_probs=119.1
Q ss_pred EEEEEEeeCCCeEEEec---CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC--CCCceee
Q 003360 195 ITAMKLITGNSFILSSA---DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV--SCPLFLL 267 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~--s~~~~~~ 267 (826)
-...+++++|++++... +..+.+.+.....+... .+-.++..- .+....+ +-+.||+...... .+.. .
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~e-i~vp~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~--~ 181 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRM-MDVPDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNP--K 181 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEE-EeCCCCcEEEEecCCccE--EEeecCceEEEEecCCCce--E
Confidence 34678999999999765 56788877655443332 111111111 1122211 2245555554333 2221 1
Q ss_pred eeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN 346 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~ 346 (826)
............-....+ .|.+ +++++.+..+ |+|.+.|+..........+..+.+... +.....
T Consensus 182 ~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~---------~~~wrP 247 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK---------ADGWRP 247 (352)
T ss_pred EeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccc---------ccccCC
Confidence 111110000000000112 4455 8888887777 999999986443211111111111100 001123
Q ss_pred CCeEEEEEccCCCEEEEEe----------cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc-EEEEE
Q 003360 347 GSIISLNMNRNSQHLAVGS----------DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-FLVIA 415 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasGs----------~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~l~sg 415 (826)
+.+.-++++++++++.+.. ..+.|.++|..+++++..... ...+..++|++ |+. +|++.
T Consensus 248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~------Dgkp~lyvt 317 (352)
T TIGR02658 248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQ------DAKPLLYAL 317 (352)
T ss_pred CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECC------CCCeEEEEe
Confidence 4455599999999888853 124799999999999955543 34788999999 677 77766
Q ss_pred E-CCCcEEEEECCCCceEEee
Q 003360 416 T-KDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 416 s-~Dg~V~iwd~~tg~~i~~~ 435 (826)
. .++.|.++|..+++.+.+.
T Consensus 318 n~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 318 STGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCCcEEEEECcCCeEEeee
Confidence 6 5788999999999999875
No 276
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.08 E-value=0.00087 Score=76.15 Aligned_cols=249 Identities=14% Similarity=0.158 Sum_probs=150.6
Q ss_pred eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCC------------CEEEEEeCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS------------RVLVSGDQSG 305 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~------------~~Lasgs~dg 305 (826)
|++.| +||-|+.. .|-+-|. +.+. ...+..|...|+.|.|.|.. ..+|++...|
T Consensus 23 w~~~G-LiAygshs-lV~VVDs~s~q~-----------iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 23 WSPSG-LIAYGSHS-LVSVVDSRSLQL-----------IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cCccc-eEEEecCc-eEEEEehhhhhh-----------hhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 66655 56666553 6777787 4333 22345788999999998732 3688899999
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc---CC-CEEEEEecCCeEEEEecCCCeeE
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR---NS-QHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~---~g-~~lasGs~dG~V~vwD~~~~~~l 381 (826)
.|.+||+...... ..+..+..+|..++|-+ +. .+|+.-....+|.+|+..+|+.+
T Consensus 90 rIil~d~~~~s~~---------------------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~ 148 (1062)
T KOG1912|consen 90 RIILVDFVLASVI---------------------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF 148 (1062)
T ss_pred cEEEEEehhhhhh---------------------hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee
Confidence 9999999844221 23334566788888854 33 35666666778999999999998
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCc
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGA 461 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~ 461 (826)
+.... ......++.+.|. |...+...+..|.|.+-+.-.- ..+..++.- +++-..-..+ +..
T Consensus 149 Wk~~y---s~~iLs~f~~DPf-----d~rh~~~l~s~g~vl~~~~l~~-------sep~~pgk~--~qI~sd~Sdl-~~l 210 (1062)
T KOG1912|consen 149 WKYDY---SHEILSCFRVDPF-----DSRHFCVLGSKGFVLSCKDLGL-------SEPDVPGKE--FQITSDHSDL-AHL 210 (1062)
T ss_pred ecccc---CCcceeeeeeCCC-----CcceEEEEccCceEEEEeccCC-------CCCCCCcee--EEEecCccch-hhh
Confidence 65542 2335566888886 7888888888888777665410 011112222 2222110000 000
Q ss_pred cccccccc-cCC-----------CCCCCCCC-CCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCcee-eEeeee
Q 003360 462 NLSNVAGM-NKG-----------SPKENAVP-KQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCW-ASTFYS 527 (826)
Q Consensus 462 ~~~~~~~~-~~~-----------~~~~~~~~-~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~-~~~~~~ 527 (826)
+.....+. ... .+. .+++ ....+++...+.+.||++. -..++..+.+. ..|.- ..++..
T Consensus 211 ere~at~ns~ts~~~sa~fity~a~f-af~p~~rn~lfi~~prellv~dle-----~~~~l~vvpie-r~~akfv~vlP~ 283 (1062)
T KOG1912|consen 211 ERETATGNSTTSTPASAYFITYCAQF-AFSPHWRNILFITFPRELLVFDLE-----YECCLAVVPIE-RGGAKFVDVLPD 283 (1062)
T ss_pred hhhhhccccccCCCcchhHHHHHHhh-hcChhhhceEEEEeccceEEEcch-----hhceeEEEEec-cCCcceeEeccC
Confidence 00000000 000 000 1222 2567888889999999997 55677777664 55542 222222
Q ss_pred CCceEEEEEEeeceEEEec
Q 003360 528 GSDVGLMLLFTSGKFEIRS 546 (826)
Q Consensus 528 ~~~~~lv~~~~~G~I~i~s 546 (826)
+.-.+|.|+..||.+-+|-
T Consensus 284 ~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 284 PRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred CCcceEEEEecCCeEEEEE
Confidence 7889999999999988774
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.05 E-value=2.3e-05 Score=87.79 Aligned_cols=205 Identities=12% Similarity=0.138 Sum_probs=128.0
Q ss_pred cCCCEEEEEEeeCCCeEEEec-CCcEEEe-ccCCCceeec----ccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCc
Q 003360 191 LDSSITAMKLITGNSFILSSA-DEDYSLL-AKSVPPLLDF----ETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPL 264 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w-~~~~~~~~~~----~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~ 264 (826)
.+..+..+.++|.|+.+++++ -+.+.+- +....+..-+ .|....--++.++...+-++......-.+|++....
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 346778889999999999988 4443332 2222122211 111000011134444555555555566789982211
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
-.. + +.-..+|+.+|+.+-|+|+. ..|++++.|-.|..||++.-.. .. ..+.
T Consensus 103 ~~a---I----ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---------------p~-----ys~~ 155 (1081)
T KOG0309|consen 103 SNA---I----EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---------------PF-----YSTS 155 (1081)
T ss_pred ccc---e----EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---------------ce-----eeee
Confidence 000 1 11124677999999999986 5789999999999999984322 11 1222
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.-....+.++|+-....+.+.+....|++||++.+.-. .....+|...|.++.|... --..+++++.|++|+.
T Consensus 156 ~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~p--l~s~K~~vs~vn~~~fnr~-----~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTP--LCSLKGHVSSVNSIDFNRF-----KYSEIMSSSNDGTVKF 228 (1081)
T ss_pred cccccCceeeecccCcchhhhccCCceEEEeccCCCcc--eEEecccceeeehHHHhhh-----hhhhhcccCCCCceee
Confidence 22445667888875555666677778999999877644 2333467777888887653 2456889999999999
Q ss_pred EECCCC
Q 003360 424 LDSDNG 429 (826)
Q Consensus 424 wd~~tg 429 (826)
||....
T Consensus 229 w~y~kS 234 (1081)
T KOG0309|consen 229 WDYSKS 234 (1081)
T ss_pred eccccc
Confidence 998754
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.04 E-value=0.00074 Score=84.56 Aligned_cols=220 Identities=12% Similarity=0.112 Sum_probs=129.2
Q ss_pred EEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecc-ccc-----CCc-------c---ee--eCC-CCCEEEEEECCC
Q 003360 195 ITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFE-TKL-----KDG-------S---QS--HSK-VKNLFITGHSDG 253 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~-~~h-----~g~-------V---~~--~s~-~~~~l~Tgs~DG 253 (826)
-..+++.+++..++.+. ...|+.++........+. .+. .++ . +. +++ ++.++++.+.++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 46778888887666654 566777754333332220 010 011 0 11 777 677888889999
Q ss_pred cEEEEeCCCCceeeeeeccccc-cccccc------CCCCeEEEEEeCCCCEE-EEEeCCCcEEEEEeCCCCCccccceEE
Q 003360 254 AINFWDVSCPLFLLILSLKQQS-EKDFSL------SGIPLTALYYDGTSRVL-VSGDQSGMVRIFKLKYEPHAIENSFLS 325 (826)
Q Consensus 254 tVriWD~s~~~~~~i~~l~~~~-~~~~~~------h~~~V~~l~fsp~~~~L-asgs~dg~V~iwd~~~~~~~~~~~~~~ 325 (826)
.|++||........ +.... ...... .-...+.|+|+|++..| ++-+.++.|++||+.++.. ..
T Consensus 706 ~I~v~d~~~g~v~~---~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~------~~ 776 (1057)
T PLN02919 706 QIWEYNISDGVTRV---FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS------RL 776 (1057)
T ss_pred eEEEEECCCCeEEE---EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE------EE
Confidence 99999985443211 11000 000000 11356789999999854 4556678999999875421 11
Q ss_pred EeecCC-CCeEEEEEEEEee--------ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc---------
Q 003360 326 FTGSKK-GNSHIIHSVKVMK--------INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA--------- 387 (826)
Q Consensus 326 i~~s~~-~~~~~~~~~~~~~--------~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~--------- 387 (826)
+..... ..... ..++. .-.....++++++|.++++-+.+++|++||..++.+.......
T Consensus 777 ~~gg~~~~~~~l---~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 777 LAGGDPTFSDNL---FKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred EEecccccCccc---ccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence 110000 00000 00000 0112468899999998888889999999999888765322110
Q ss_pred -cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 388 -SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 388 -~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
...-.....+++++ ++.++++-+.+++|++||+.+++..
T Consensus 854 ~~a~l~~P~GIavd~------dG~lyVaDt~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 854 LKAQLSEPAGLALGE------NGRLFVADTNNSLIRYLDLNKGEAA 893 (1057)
T ss_pred cccccCCceEEEEeC------CCCEEEEECCCCEEEEEECCCCccc
Confidence 01112456778877 5888888888999999999988753
No 279
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=2.2e-05 Score=81.09 Aligned_cols=134 Identities=16% Similarity=0.218 Sum_probs=98.9
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc-CCCEE
Q 003360 283 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-NSQHL 361 (826)
Q Consensus 283 ~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l 361 (826)
...|.++.|...+.++..|..+|.|..+|++..... .+.+ .....|...|++|..-. ++++|
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG------------~~~~-----a~rlyh~Ssvtslq~Lq~s~q~L 314 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG------------NGWC-----AQRLYHDSSVTSLQILQFSQQKL 314 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccC------------CCcc-----eEEEEcCcchhhhhhhccccceE
Confidence 367889999998999999999999999999965321 1111 44556788899998876 78899
Q ss_pred EEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 362 AVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
++.+.+|+|++||.+--++-.......+| |...++.|.... .+...+++++.|...+||.++.|.++.+.+.
T Consensus 315 maS~M~gkikLyD~R~~K~~~~V~qYeGH---vN~~a~l~~~v~-~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 315 MASDMTGKIKLYDLRATKCKKSVMQYEGH---VNLSAYLPAHVK-EEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eeccCcCceeEeeehhhhcccceeeeecc---cccccccccccc-cccceEEEccCeeEEEEEecccCceeeccCC
Confidence 99999999999999877662112222243 333444443222 2467788899999999999999999988643
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.03 E-value=0.0011 Score=67.67 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=29.1
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCC
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKY 314 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~ 314 (826)
..|..|+.+||+..||+...+|.|.+|++-.
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 6899999999999999999999999999863
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=2.1e-05 Score=85.20 Aligned_cols=173 Identities=14% Similarity=0.184 Sum_probs=115.6
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeC--CCCcee-eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDV--SCPLFL-LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~--s~~~~~-~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
.+|+..|.. --.+.+-+++++.|.+|++|.+ .+.... .-+... ...|..+|..+-|-.+.+.+++ .|
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfT------Y~aHkk~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFT------YQAHKKPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeE------hhhccCcccceeeeeccceeee--cc
Confidence 678888877 3345667899999999999998 333311 012222 3468899999999998887765 57
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCC---eEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGS---IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~---V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
|-+.+||.-.+.... + +....-++. |.|+.--...-.+|.++...+|+++|.+.+...
T Consensus 804 ~giHlWDPFigr~La--------------q-----~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~ 864 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLA--------------Q-----MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT 864 (1034)
T ss_pred CcceeecccccchhH--------------h-----hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce
Confidence 889999976432210 0 000011222 334332112223344478899999999988765
Q ss_pred Eeeecc--cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 382 YQKHIA--SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 382 ~~~~~~--~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
...... .+.+.-+.+++..+. |+.++++-+.|+|.+.|.++|+.+.+.
T Consensus 865 ~E~kVcna~~Pna~~R~iaVa~~------GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 865 CELKVCNAPGPNALTRAIAVADK------GNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred eeEEeccCCCCchheeEEEeccC------cchhhHHhcCCcEEEEecCCCceeccC
Confidence 444432 344556888888874 999999999999999999999988764
No 282
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=3.9e-05 Score=79.31 Aligned_cols=117 Identities=11% Similarity=0.112 Sum_probs=89.4
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC-----eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 345 INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP-----TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~-----~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
..+.|.++.|...+.+|..|+.+|.|.++|++.+ .+...+ -|.+.|+++.--.. ++++|++.+.+|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl----yh~Ssvtslq~Lq~-----s~q~LmaS~M~g 321 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL----YHDSSVTSLQILQF-----SQQKLMASDMTG 321 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE----EcCcchhhhhhhcc-----ccceEeeccCcC
Confidence 4677999999998999999999999999999875 122111 36678888776553 589999999999
Q ss_pred cEEEEECCCCce---EEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC-cEEE
Q 003360 420 SVLVLDSDNGNM---LSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AACA 495 (826)
Q Consensus 420 ~V~iwd~~tg~~---i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~-~irv 495 (826)
+|++||.+--++ +.++.+|.+...... . .-.+.+++|++++++ ..||
T Consensus 322 kikLyD~R~~K~~~~V~qYeGHvN~~a~l~-~----------------------------~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 322 KIKLYDLRATKCKKSVMQYEGHVNLSAYLP-A----------------------------HVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred ceeEeeehhhhcccceeeeecccccccccc-c----------------------------ccccccceEEEccCeeEEEE
Confidence 999999997777 888888887632111 0 123456788888888 6999
Q ss_pred Eecc
Q 003360 496 YSLS 499 (826)
Q Consensus 496 ~sl~ 499 (826)
|++.
T Consensus 373 Wsl~ 376 (425)
T KOG2695|consen 373 WSLD 376 (425)
T ss_pred Eecc
Confidence 9998
No 283
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.00 E-value=0.03 Score=59.17 Aligned_cols=169 Identities=8% Similarity=0.037 Sum_probs=103.5
Q ss_pred cccCCCEEEEEEeeCCCeEEEec----CCcEEEec--cCCCceeec-ccccCCccee---eCCCCCEEEEE-ECCCcEEE
Q 003360 189 PFLDSSITAMKLITGNSFILSSA----DEDYSLLA--KSVPPLLDF-ETKLKDGSQS---HSKVKNLFITG-HSDGAINF 257 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~----d~~i~~w~--~~~~~~~~~-~~~h~g~V~~---~s~~~~~l~Tg-s~DGtVri 257 (826)
-.+.+..+-++++++.+.|.++. ++.|..|. .....+.-. .....|.-+| .++++++++++ +.-|.|.+
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 45556788899999999988854 34566553 221222211 1222333334 88999988877 45689999
Q ss_pred EeC-CCCceeee-eecccccccccccCC----CCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecC
Q 003360 258 WDV-SCPLFLLI-LSLKQQSEKDFSLSG----IPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSK 330 (826)
Q Consensus 258 WD~-s~~~~~~i-~~l~~~~~~~~~~h~----~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~ 330 (826)
+-+ ..+.+... ..+... .-..|. .-+.+..|.|++++|++.+- -..|.+|++..+.....
T Consensus 116 ~p~~~dG~l~~~v~~~~h~---g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~---------- 182 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHT---GSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA---------- 182 (346)
T ss_pred EEcccCCccccceeeeecC---CCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc----------
Confidence 998 43443221 112110 000111 22889999999999988754 34799999985433110
Q ss_pred CCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCC
Q 003360 331 KGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGP 378 (826)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~ 378 (826)
.. . ..+....-+.|.|+|++++..+-+ -+++|-+|.+...
T Consensus 183 --~~-----~-~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 183 --DP-----A-EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred --cc-----c-ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 00 1 112234468899999999876655 4899999999874
No 284
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.99 E-value=0.013 Score=64.17 Aligned_cols=71 Identities=10% Similarity=0.188 Sum_probs=48.6
Q ss_pred cCCCEEEEEEeeCCCeEEEecCCcEEEeccCCC-ceeecccccCCccee--eCCCCCEEEEEECCC--------------
Q 003360 191 LDSSITAMKLITGNSFILSSADEDYSLLAKSVP-PLLDFETKLKDGSQS--HSKVKNLFITGHSDG-------------- 253 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~-~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DG-------------- 253 (826)
..-+++.+++||.|.++++..-.-|.+|..... .+..+ .|. .|.- |+|.+++|.|-+.-+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~--~~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF--RHP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeee--ecC-CceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 445788899999999999887677888854331 22222 232 2333 999999999976544
Q ss_pred -cEEEEeCCCCc
Q 003360 254 -AINFWDVSCPL 264 (826)
Q Consensus 254 -tVriWD~s~~~ 264 (826)
.+.+||..++.
T Consensus 108 n~~~vwd~~sg~ 119 (561)
T COG5354 108 NNVFVWDIASGM 119 (561)
T ss_pred CceeEEeccCce
Confidence 38999984444
No 285
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0013 Score=75.77 Aligned_cols=165 Identities=17% Similarity=0.209 Sum_probs=104.4
Q ss_pred cceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCC-eEEEEEeCCCCEEEEEeCCC-----cEE
Q 003360 235 GSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIP-LTALYYDGTSRVLVSGDQSG-----MVR 308 (826)
Q Consensus 235 ~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~-V~~l~fsp~~~~Lasgs~dg-----~V~ 308 (826)
.+.|+++.+..++.|+.||.|-+.+-+.... . .+..+... |+.+....+..+|++-+.|+ .|+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~---~--------~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk 95 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLI---R--------GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK 95 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceee---e--------hheecchhhhhHhhcccCceEEEEEeecCCCCceEEE
Confidence 6777999999999999999999988754431 1 12233333 55555445556777766665 499
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEE---EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEec---CCCeeEE
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV---KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT---EGPTVLY 382 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~---~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~---~~~~~l~ 382 (826)
||+++.-.... +.. +...|++ +......++++++.+.+-..+|+|..||.|..+.= |....
T Consensus 96 iw~lek~~~n~--sP~---------c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-- 162 (933)
T KOG2114|consen 96 IWDLEKVDKNN--SPQ---------CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-- 162 (933)
T ss_pred EecccccCCCC--Ccc---------eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc--
Confidence 99998553211 011 1111111 12222567999999999999999999999987731 11111
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcE-EEEEECCCcEEEEECCCCce
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNF-LVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~-l~sgs~Dg~V~iwd~~tg~~ 431 (826)
.....+....+||.+.|.. |+.. +++++ -..|.+|.+. |+.
T Consensus 163 r~~~~~~~~~pITgL~~~~------d~~s~lFv~T-t~~V~~y~l~-gr~ 204 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRS------DGKSVLFVAT-TEQVMLYSLS-GRT 204 (933)
T ss_pred ceeeeccCCCCceeeEEec------CCceeEEEEe-cceeEEEEec-CCC
Confidence 1233345678999999987 4554 55555 4458888877 443
No 286
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.97 E-value=0.00024 Score=72.26 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=104.0
Q ss_pred EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
.++-++.+|.|.++......-. ..++.-+...+ ....-.++.|++.+..++++..+|.+.+-+...... .
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss--~~L~~ls~~ki--~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l------e 156 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESS--VHLRGLSSKKI--SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVL------E 156 (339)
T ss_pred eeeeccccceEEEEeeccceee--eeecccchhhh--hheeeeEEEeeccCceEEEEcCCCcEEEEecceeee------e
Confidence 6788899999999987433210 11221101111 111245778999999999999999988544431110 0
Q ss_pred EEeecCCCCeEEEEEEE-EeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCC-CeeEEeeecccCCCCCeeEEEEee
Q 003360 325 SFTGSKKGNSHIIHSVK-VMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEG-PTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~-~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
.++ ...|.-.+....|+. +.++|.+|++||.+..||+|- ++.++. -...|...|.+|.-+|
T Consensus 157 --------------~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~--n~kvH~~GV~SI~ss~ 220 (339)
T KOG0280|consen 157 --------------KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH--NSKVHTSGVVSIYSSP 220 (339)
T ss_pred --------------ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee--cceeeecceEEEecCC
Confidence 011 122344566677764 346899999999999999994 445533 2346888999999888
Q ss_pred cccCCCCCcEEEEEECCCcEEEEECC-CCceE
Q 003360 402 CSLQGFEKNFLVIATKDSSVLVLDSD-NGNML 432 (826)
Q Consensus 402 ~~~~~~d~~~l~sgs~Dg~V~iwd~~-tg~~i 432 (826)
. .+.++++|+-|-.|++||.+ -|+.+
T Consensus 221 ~-----~~~~I~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 221 P-----KPTYIATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred C-----CCceEEEeccccceeeeehhcccCcc
Confidence 4 57899999999999999998 45554
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.96 E-value=8.6e-05 Score=74.11 Aligned_cols=157 Identities=12% Similarity=0.130 Sum_probs=91.0
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec---ccccCCccee-eCCCCCEEEEEEC-----CCcEEEEe
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF---ETKLKDGSQS-HSKVKNLFITGHS-----DGAINFWD 259 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~---~~~h~g~V~~-~s~~~~~l~Tgs~-----DGtVriWD 259 (826)
.|..+-.+-..+.-+..++++. |+.+.+..... .+..+ ..-|.+.... ....++.+.++.. -+..++|+
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~ 165 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANT 165 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechH-HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeec
Confidence 3333333344455566667776 88777775443 11111 1112222222 3334455554432 12333444
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
+. ++..+... ......|++++-+|. ..++++|+.||.|-+||++......
T Consensus 166 ~~-----p~~t~~~~-----~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~------------------- 216 (319)
T KOG4714|consen 166 LD-----PIKTLIPS-----KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV------------------- 216 (319)
T ss_pred cc-----cccccccc-----ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH-------------------
Confidence 42 22222211 112246999999995 4678889999999999998442210
Q ss_pred EEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCC
Q 003360 339 SVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~ 377 (826)
-.+..|+.++.-+-|+| ++..|.++++||.+.-||..+
T Consensus 217 -S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 217 -SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 11234577899999998 567899999999999999864
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.95 E-value=0.018 Score=62.31 Aligned_cols=190 Identities=13% Similarity=0.126 Sum_probs=132.6
Q ss_pred EeeCCCeEEEecCCcEEEeccCCCceeecccc--c----CC---ccee-----eC-CCCCEEEEEECCCcEEEEeC-CCC
Q 003360 200 LITGNSFILSSADEDYSLLAKSVPPLLDFETK--L----KD---GSQS-----HS-KVKNLFITGHSDGAINFWDV-SCP 263 (826)
Q Consensus 200 fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~--h----~g---~V~~-----~s-~~~~~l~Tgs~DGtVriWD~-s~~ 263 (826)
.+.||+.++-...|.|-+++.....+..+..+ . +. ..++ |+ .+|++++..+. |.+-|.+. .+.
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 46788887776667777775443322222111 0 01 1111 44 36888888776 56666555 232
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
. ++ -.|...|.-..+..++.-++.|..|| .+-|||.+++.. -+.
T Consensus 353 ~------iq-------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~----------------------kr~ 397 (668)
T COG4946 353 S------IQ-------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV----------------------KRI 397 (668)
T ss_pred e------EE-------cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE----------------------EEe
Confidence 2 22 13556788889988888999999999 899999985432 223
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC---
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS--- 419 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg--- 419 (826)
...-+.|-++..+++|++++++.....+-++|+.++.+...- ....+-|+.+.|+| ++.+++-+--+|
T Consensus 398 e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id---kS~~~lItdf~~~~------nsr~iAYafP~gy~t 468 (668)
T COG4946 398 EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID---KSEYGLITDFDWHP------NSRWIAYAFPEGYYT 468 (668)
T ss_pred eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec---ccccceeEEEEEcC------CceeEEEecCcceee
Confidence 334567999999999999999999999999999999876322 23455789999999 588888877776
Q ss_pred -cEEEEECCCCceEEe
Q 003360 420 -SVLVLDSDNGNMLST 434 (826)
Q Consensus 420 -~V~iwd~~tg~~i~~ 434 (826)
.|+++|+.+++....
T Consensus 469 q~Iklydm~~~Kiy~v 484 (668)
T COG4946 469 QSIKLYDMDGGKIYDV 484 (668)
T ss_pred eeEEEEecCCCeEEEe
Confidence 689999998776543
No 289
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.89 E-value=0.015 Score=63.37 Aligned_cols=119 Identities=16% Similarity=0.134 Sum_probs=78.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceeeee---ecccccccccccCCCCeEEEEEeCCCCEEEEEeC----------CCcEE
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFLLIL---SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ----------SGMVR 308 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~~i~---~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~----------dg~V~ 308 (826)
++.++.+... |+|.+-|+++....... .+... ...-......+.-++++|+++.+.+... .++|.
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~-~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEA-EKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeecccc-ccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 7887777766 99999997443321111 11100 0000112345556999999998888532 24788
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEEEe-cCCeEEEEecCCCeeEEee
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGS-DQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~lasGs-~dG~V~vwD~~~~~~l~~~ 384 (826)
++|..+.+. +........+..|+++||++ +|.+.+ .++.|.|+|..+++.+.+.
T Consensus 283 ViD~~t~kv----------------------i~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 283 VVDAKTGKR----------------------LRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEECCCCeE----------------------EEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 888874432 44444456799999999999 777666 5788999999999888544
No 290
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.88 E-value=0.00054 Score=69.98 Aligned_cols=125 Identities=15% Similarity=0.152 Sum_probs=80.3
Q ss_pred cccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCC----ceeecccccC-----Cccee--eCCCCC-EEEEEECCCcEE
Q 003360 189 PFLDSSITAMKLITGNSFILSSADEDYSLLAKSVP----PLLDFETKLK-----DGSQS--HSKVKN-LFITGHSDGAIN 256 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~----~~~~~~~~h~-----g~V~~--~s~~~~-~l~Tgs~DGtVr 256 (826)
..|.-.|..++|+.|...++++.|-.|.+|+.... .+... .||. .-|++ |+|... .+.-.+..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDi-KP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDI-KPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEec-cCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 45666789999999999999998999999965431 11222 3332 23444 888654 666677889999
Q ss_pred EEeCCCCce-eeeeecc-----cccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 257 FWDVSCPLF-LLILSLK-----QQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 257 iWD~s~~~~-~~i~~l~-----~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
+-|+....+ .--+++. .-...-+..--..|..+.|+++++++++-+. -+|+|||++..
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 999842221 0001111 0001112222278899999999999987654 48999999854
No 291
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.87 E-value=0.0013 Score=74.67 Aligned_cols=173 Identities=7% Similarity=-0.065 Sum_probs=98.3
Q ss_pred CCEEEEEEeeCCCeEEEec--CC----cEEEeccCC---CceeecccccCCccee--eCCCCCEEEEEE-CCCcEEEEeC
Q 003360 193 SSITAMKLITGNSFILSSA--DE----DYSLLAKSV---PPLLDFETKLKDGSQS--HSKVKNLFITGH-SDGAINFWDV 260 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~----~i~~w~~~~---~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs-~DGtVriWD~ 260 (826)
......+|+|||+.|+..+ ++ .+..|+... ...........+.... |+|||+.|+..+ .+|..+||.+
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 3345578999999988754 23 233353221 1112221111122222 999999777655 5787777754
Q ss_pred --C--CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 261 --S--CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS---GMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 261 --s--~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d---g~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
. +... ..+ ..+...+....|+|+++.|+..+.+ ..|.+||+.++..
T Consensus 311 ~~~~~g~~~---~~l--------t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---------------- 363 (428)
T PRK01029 311 QIDPEGQSP---RLL--------TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---------------- 363 (428)
T ss_pred ECcccccce---EEe--------ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----------------
Confidence 2 1211 111 1223456788999999988876543 3688888874432
Q ss_pred eEEEEEEEEeeccCCeEEEEEccCCCEEEEEec---CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeec
Q 003360 334 SHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD---QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~---dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
.........+....|+|||+.|+.... .+.|.+||+.+++...... ....+...+|+|.
T Consensus 364 ------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~----~~g~~~~p~Ws~~ 425 (428)
T PRK01029 364 ------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI----GSGEKRFPSWGAF 425 (428)
T ss_pred ------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec----CCCcccCceecCC
Confidence 111111234677899999998876543 3568899998776542221 2233445666663
No 292
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.87 E-value=1.3e-05 Score=57.42 Aligned_cols=38 Identities=26% Similarity=0.628 Sum_probs=33.5
Q ss_pred ccccccccccccceEEEecCCCCCEEEEEEecCcEEEEe
Q 003360 4 NVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWG 42 (826)
Q Consensus 4 ~~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd 42 (826)
..+.++..+...|.+++|+ |++.+||+|+.||.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~-~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWS-PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEE-TTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEe-cccccceeeCCCCEEEEEC
Confidence 3456677889999999995 7999999999999999997
No 293
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00024 Score=81.00 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=81.9
Q ss_pred eCCCCCEEEEEEC----CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCC
Q 003360 239 HSKVKNLFITGHS----DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKY 314 (826)
Q Consensus 239 ~s~~~~~l~Tgs~----DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~ 314 (826)
|||...++++++- .|+|.||--++... ..+. ....+++++|+|..-.|++|..-|.+.+|....
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfadtGEPq---r~Vt---------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFADTGEPQ---RDVT---------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEecCCCCC---cccc---------cceehhhhccChHHHHHhhccccceeEEEecCC
Confidence 9999999998874 58999986544321 1122 123567899999999999999999999999873
Q ss_pred CCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC
Q 003360 315 EPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 315 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~ 376 (826)
.+ .+ -....|+.+|..+.||++|..++++..-|.|.+|.+.
T Consensus 91 ~e-----------------~h----tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 TE-----------------TH----TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ce-----------------ee----eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 22 22 2334578899999999999999999999999999875
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.84 E-value=0.00021 Score=75.72 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=66.9
Q ss_pred ccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC
Q 003360 280 SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ 359 (826)
Q Consensus 280 ~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 359 (826)
.+|-.-++.|+|+||+++++++..|..||+-.+..-... + --...|..-|..++.-++.
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I------------e--------sfclGH~eFVS~isl~~~~- 206 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI------------E--------SFCLGHKEFVSTISLTDNY- 206 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch------------h--------hhccccHhheeeeeeccCc-
Confidence 567789999999999999999999999999877521110 0 1123466779999998877
Q ss_pred EEEEEecCCeEEEEecCCCeeEEee
Q 003360 360 HLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 360 ~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
.|++|+.|++|++||+++++++.+.
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eeeecCCCCcEEEEecccCCccccc
Confidence 5999999999999999999988444
No 295
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.82 E-value=4.3e-05 Score=54.66 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=31.2
Q ss_pred cccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003360 279 FSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFK 311 (826)
Q Consensus 279 ~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd 311 (826)
+..|..+|++|+|+|++.+|++|+.|+.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 457889999999999999999999999999997
No 296
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.80 E-value=0.048 Score=61.33 Aligned_cols=80 Identities=14% Similarity=0.254 Sum_probs=66.5
Q ss_pred EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 340 VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
+...++++.|.|.+++|+...++.|+.||+|.+||...+...+. ...-.++.++|+| +|.++++|+.-|
T Consensus 253 vtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----ka~~~P~~iaWHp------~gai~~V~s~qG 321 (545)
T PF11768_consen 253 VTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----KAEFIPTLIAWHP------DGAIFVVGSEQG 321 (545)
T ss_pred EEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----eecccceEEEEcC------CCcEEEEEcCCc
Confidence 55667789999999999999999999999999999977754422 2234577899999 699999999999
Q ss_pred cEEEEECCCCc
Q 003360 420 SVLVLDSDNGN 430 (826)
Q Consensus 420 ~V~iwd~~tg~ 430 (826)
.+.+||..-+-
T Consensus 322 elQ~FD~ALsp 332 (545)
T PF11768_consen 322 ELQCFDMALSP 332 (545)
T ss_pred eEEEEEeecCc
Confidence 99999987443
No 297
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.80 E-value=0.014 Score=70.28 Aligned_cols=180 Identities=13% Similarity=0.110 Sum_probs=105.9
Q ss_pred Cccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003360 234 DGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFK 311 (826)
Q Consensus 234 g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd 311 (826)
+.|.+ |..+.+-|+.+..+|.|.+-|.....+..+ ..-...|.+++|+||..+|+..+..++|.+-.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-----------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-----------GNVDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeee-----------eeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 34555 777788888899999999998855442221 11236899999999999999999988887654
Q ss_pred eCCC----CCc-----cccceEEEeecCCCCeEEEEE-----------EEEee---ccCCeEEEEEccCCCEEEEE----
Q 003360 312 LKYE----PHA-----IENSFLSFTGSKKGNSHIIHS-----------VKVMK---INGSIISLNMNRNSQHLAVG---- 364 (826)
Q Consensus 312 ~~~~----~~~-----~~~~~~~i~~s~~~~~~~~~~-----------~~~~~---~~~~V~~l~~s~~g~~lasG---- 364 (826)
-.-. ... ....+..+-|.+..++..... .+... ....=++++|--||.++|+.
T Consensus 138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 3211 000 001122333333333321100 00001 12334679999999999983
Q ss_pred -ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE---ECCCcEEEEECCCCceEEee
Q 003360 365 -SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA---TKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 365 -s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg---s~Dg~V~iwd~~tg~~i~~~ 435 (826)
.....|+|||.. +.+-.+. .....--.++.|.|. |..+++- ++|+.|.++..+ |-.-..|
T Consensus 218 ~~~~RkirV~drE-g~Lns~s---e~~~~l~~~LsWkPs------gs~iA~iq~~~sd~~IvffErN-GL~hg~f 281 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GALNSTS---EPVEGLQHSLSWKPS------GSLIAAIQCKTSDSDIVFFERN-GLRHGEF 281 (1265)
T ss_pred cCCceeEEEeccc-chhhccc---CcccccccceeecCC------CCeEeeeeecCCCCcEEEEecC-Ccccccc
Confidence 333789999987 4322111 111222345888883 7666654 356678888855 6554444
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0016 Score=74.76 Aligned_cols=181 Identities=16% Similarity=0.094 Sum_probs=114.5
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcccc
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN 321 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~ 321 (826)
.++.++-|+.+|.|++.+..+... . . -.|... .-+|.+++||+.||+|.|..+-+....
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~~-~---~--------~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~--- 106 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNPK-T---N--------FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI--- 106 (846)
T ss_pred hcceeeeccccceEEEEecCCccc-c---c--------cccccc------ccCCceEEEecCCCcEEEeeccCCccc---
Confidence 347899999999999999855421 0 0 012211 567999999999999999887644321
Q ss_pred ceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-----CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeE
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-----SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 396 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-----g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~s 396 (826)
.....+.++.+++++|+ .+.+++|+.-| +.++.-+=..-.-.. ..+...++|.+
T Consensus 107 -------------------~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~ 165 (846)
T KOG2066|consen 107 -------------------TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHS 165 (846)
T ss_pred -------------------eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEE
Confidence 11223668999999998 46799999998 656543211000000 12356789999
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCC
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKE 476 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (826)
+.|. +++++=++.+| |+|||..+++.+... .++....-.. .-+..
T Consensus 166 i~W~--------g~lIAWand~G-v~vyd~~~~~~l~~i--~~p~~~~R~e------------------------~fpph 210 (846)
T KOG2066|consen 166 IKWR--------GNLIAWANDDG-VKVYDTPTRQRLTNI--PPPSQSVRPE------------------------LFPPH 210 (846)
T ss_pred EEec--------CcEEEEecCCC-cEEEeccccceeecc--CCCCCCCCcc------------------------cCCCc
Confidence 9996 55666666555 999999988877653 2221110000 00011
Q ss_pred CCCCCCCEEEEeecCcEEEEecc
Q 003360 477 NAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 477 ~~~~~~~~vv~~se~~irv~sl~ 499 (826)
....++..+|++-.++|+|+++.
T Consensus 211 l~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 211 LHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred eEecCCCeEEEecCCeEEEEEEe
Confidence 22334567778888899999987
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.76 E-value=0.00041 Score=70.79 Aligned_cols=222 Identities=14% Similarity=0.234 Sum_probs=134.4
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC------ceeecccccCC------------ccee---eCCCC-CEEEE
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSVP------PLLDFETKLKD------------GSQS---HSKVK-NLFIT 248 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~------~~~~~~~~h~g------------~V~~---~s~~~-~~l~T 248 (826)
..-|+++.|-..|.++++|. .|.|.++..... .+..| .+|.- .|.. +.+.+ ..++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45799999999999999998 788888832211 11112 22322 2222 33333 35666
Q ss_pred EECCCcEEEEeCCCCceeee--------------------eeccc-------------ccccccccCCCCeEEEEEeCCC
Q 003360 249 GHSDGAINFWDVSCPLFLLI--------------------LSLKQ-------------QSEKDFSLSGIPLTALYYDGTS 295 (826)
Q Consensus 249 gs~DGtVriWD~s~~~~~~i--------------------~~l~~-------------~~~~~~~~h~~~V~~l~fsp~~ 295 (826)
.+.|.+|++|.+..+.+..+ ..+.- +.......|..-|.+++|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 67899999998732211000 00000 0000124566789999999999
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec-----cCCeEEEEEccC-CCEEEEEecCCe
Q 003360 296 RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-----NGSIISLNMNRN-SQHLAVGSDQGY 369 (826)
Q Consensus 296 ~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-----~~~V~~l~~s~~-g~~lasGs~dG~ 369 (826)
..++++ .|=.|.+|++... |+...+ +...++ ..-|++..|+|. ...+...+..|.
T Consensus 185 et~lSa-DdLrINLWnl~i~---------------D~sFnI---VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEII---------------DGSFNI---VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred heeeec-cceeeeecccccc---------------CCceEE---EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 888876 5668999998732 111111 111122 234888999985 456777888999
Q ss_pred EEEEecCCCeeE------Eeeec-------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc-eEEee
Q 003360 370 VYLLDTEGPTVL------YQKHI-------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN-MLSTN 435 (826)
Q Consensus 370 V~vwD~~~~~~l------~~~~~-------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~-~i~~~ 435 (826)
|++-|+|+..+. +...+ ..+..+.|..+.|++ +++++++- .--+|+|||.+..+ ++.+.
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~------ngryIlsR-dyltvkiwDvnm~k~pikTi 318 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD------NGRYILSR-DYLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC------CCcEEEEe-ccceEEEEecccccCCceee
Confidence 999999965433 11111 112235677888998 36676654 34589999998643 77776
Q ss_pred eccCC
Q 003360 436 LIHPK 440 (826)
Q Consensus 436 ~~~~~ 440 (826)
++|..
T Consensus 319 ~~h~~ 323 (460)
T COG5170 319 PMHCD 323 (460)
T ss_pred chHHH
Confidence 55543
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00019 Score=76.67 Aligned_cols=252 Identities=13% Similarity=0.084 Sum_probs=150.6
Q ss_pred cCCccee-eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 003360 232 LKDGSQS-HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRI 309 (826)
Q Consensus 232 h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~i 309 (826)
|..-|+. +..--+++++++.||.+++|--+.-.. +++ +..+..|-..|.+++.+-++.++++.+. |..+++
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isG-----vEf--VKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv 80 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISG-----VEF--VKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV 80 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccc-----eee--hhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence 4555555 555668999999999999998743110 000 1223456678888999999999999777 999999
Q ss_pred EEeCCCCCcc-------cc----------ceEEEeec--CCCCeEEEEE--------EEEeeccCCeEEEEEccCCCEEE
Q 003360 310 FKLKYEPHAI-------EN----------SFLSFTGS--KKGNSHIIHS--------VKVMKINGSIISLNMNRNSQHLA 362 (826)
Q Consensus 310 wd~~~~~~~~-------~~----------~~~~i~~s--~~~~~~~~~~--------~~~~~~~~~V~~l~~s~~g~~la 362 (826)
||+..-.... +. .+..++.+ +.+....+.+ ..-..|..+|.++.+++.+..++
T Consensus 81 fDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 81 FDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred EEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence 9997542110 00 01111111 1222222111 23345678899999999999999
Q ss_pred EEecCCeEEEEecCC------CeeEEeeecc------cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 363 VGSDQGYVYLLDTEG------PTVLYQKHIA------SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 363 sGs~dG~V~vwD~~~------~~~l~~~~~~------~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
+....|.|.-|.... ..+.+..... .......++++|+| ++..+.+-+.|..|++++..+|+
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp------~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP------DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc------ccCcccccCcccEEEEEEeccch
Confidence 999999999998863 1122111100 11234578899999 58888888899999999999999
Q ss_pred eEEeeeccCC----CCCcceEEEEecCCCCcccCccccccccccCC-CCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 431 MLSTNLIHPK----KPSRALFMQILNGQDGLARGANLSNVAGMNKG-SPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 431 ~i~~~~~~~~----~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
.+..+.-... .+-....|.-++= + ..-+-++.+.+.... .....|...+.|++-.+--.|+|+++.
T Consensus 235 lvqeiDE~~t~~~~q~ks~y~l~~Vel--g-RRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~ 305 (558)
T KOG0882|consen 235 LVQEIDEVLTDAQYQPKSPYGLMHVEL--G-RRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLD 305 (558)
T ss_pred hhhhhhccchhhhhccccccccceeeh--h-hhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEee
Confidence 8765421100 0000111111110 0 000111222221100 011146667889988888889999886
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.75 E-value=0.0031 Score=63.51 Aligned_cols=195 Identities=12% Similarity=-0.010 Sum_probs=112.1
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCC-CeEEEec-CCcEEEeccCCC
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGN-SFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~-~~l~~~~-d~~i~~w~~~~~ 223 (826)
..+.+++..|++-+|...+-+..+ .....|...|+-+.=..+. -.+..++ |.++++......
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~----------------~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~ 148 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHL----------------YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD 148 (344)
T ss_pred cEEEeccccceeeeecccCcccce----------------eeecccccchhhhhhhcccccceeeccCCcceeEEEEecC
Confidence 456677788888888776522111 1112233333322222211 1223344 777776643221
Q ss_pred ceeecccccCCc--cee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 224 PLLDFETKLKDG--SQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 224 ~~~~~~~~h~g~--V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
.... .-|... +.+ .+++++++++.+....|-+|.+.......+. +. + ....+.=.+.+|+.....+|
T Consensus 149 s~~~--~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~---~---a~t~D~gF~~S~s~~~~~FA 219 (344)
T KOG4532|consen 149 SNKF--AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IY---E---APTSDHGFYNSFSENDLQFA 219 (344)
T ss_pred cccc--eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eE---e---cccCCCceeeeeccCcceEE
Confidence 1110 112222 223 8999999999999999999998332211111 11 1 11123446889999999999
Q ss_pred EEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC--EEEEEecCCeEEEEecCC
Q 003360 300 SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ--HLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~--~lasGs~dG~V~vwD~~~ 377 (826)
++..||++.|||++.....+ ..+ +.. -..|++.+..+.|++-|. +|...-.-+.+.|.|+++
T Consensus 220 v~~Qdg~~~I~DVR~~~tpm----~~~--sst----------rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 220 VVFQDGTCAIYDVRNMATPM----AEI--SST----------RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred EEecCCcEEEEEecccccch----hhh--ccc----------CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 99999999999998432211 000 000 112588899999998553 455555567899999998
Q ss_pred CeeE
Q 003360 378 PTVL 381 (826)
Q Consensus 378 ~~~l 381 (826)
+.-.
T Consensus 284 ~~~~ 287 (344)
T KOG4532|consen 284 YVNH 287 (344)
T ss_pred Ccee
Confidence 8644
No 302
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.00079 Score=75.61 Aligned_cols=252 Identities=14% Similarity=0.081 Sum_probs=150.7
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCC-CccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc-CC
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSA-PKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK-SV 222 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~-~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~-~~ 222 (826)
.++.+++.+|.|-+.-..+-..- .+.+..... .-....++.+|...|..+.|+.+.+.|-++. +|.|.+|-. +.
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d---~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg 103 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTD---LNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG 103 (1189)
T ss_pred CeEEeccccceeEEEEccccCCc---ccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc
Confidence 45566777787777644331100 011110010 1122346789999999999999999988877 999999932 33
Q ss_pred Cceeecccc-cCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 223 PPLLDFETK-LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 223 ~~~~~~~~~-h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
.|...+... .+.-|.+ |..+|..|.....||.|.+=.+.+... --+.++ +.-...+.|++|.+.++
T Consensus 104 sW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLk----------g~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 104 SWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELK----------GQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred cHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcc----------hheccceeecccHHHHH
Confidence 455555222 3344444 999999999999999998777755541 001122 12345788999999999
Q ss_pred EEeCCCcEEEEEeCCCCCc--cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEE--------ccCCCEEEEEecCCe
Q 003360 300 SGDQSGMVRIFKLKYEPHA--IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNM--------NRNSQHLAVGSDQGY 369 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~~~--~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~--------s~~g~~lasGs~dG~ 369 (826)
-+-..|...+||...+... +-+....+++. +......|-.+.| -|+...+|+++.+|.
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~------------~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGI------------FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeee------------ecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 9999999999998765210 00000000000 0000112344444 357778999999999
Q ss_pred EEEEecCC-CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC---------cEEEEECCCCceEEee
Q 003360 370 VYLLDTEG-PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS---------SVLVLDSDNGNMLSTN 435 (826)
Q Consensus 370 V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg---------~V~iwd~~tg~~i~~~ 435 (826)
+.|..-.+ +..+. . ...-.|....|++ +|..|++++.|. .|.++..- |+.+.++
T Consensus 241 ~QiMR~eND~~Pvv-~----dtgm~~vgakWnh------~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtl 304 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVV-V----DTGMKIVGAKWNH------NGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTL 304 (1189)
T ss_pred ehhhhhcCCCCCeE-E----ecccEeecceecC------CCcEEEEccCcccccCccccceEEEeccc-hhheEEE
Confidence 87764332 22110 1 1123566778888 488888888654 46666655 6655554
No 303
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.67 E-value=0.022 Score=71.54 Aligned_cols=220 Identities=12% Similarity=0.135 Sum_probs=118.4
Q ss_pred EEEEEeeCC-CeEEEec-CCcEEEeccCCCceeeccc-c---cCCcc---------ee--eCCCCC-EEEEEECCCcEEE
Q 003360 196 TAMKLITGN-SFILSSA-DEDYSLLAKSVPPLLDFET-K---LKDGS---------QS--HSKVKN-LFITGHSDGAINF 257 (826)
Q Consensus 196 t~~~fs~~~-~~l~~~~-d~~i~~w~~~~~~~~~~~~-~---h~g~V---------~~--~s~~~~-~l~Tgs~DGtVri 257 (826)
..+++.+++ ...++-. .+.|.+|+........+.. + ...|. .. +.++++ ++++-..++.|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 356777654 4444444 6778888654433222211 1 11110 11 666666 4555566788999
Q ss_pred EeCCCCceeeeeeccccccc--cccc------C-CCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCCCCccccceEEEe
Q 003360 258 WDVSCPLFLLILSLKQQSEK--DFSL------S-GIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFT 327 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~--~~~~------h-~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~ 327 (826)
+|..+... ..+...... .... . -..-+.|+|+| ++.++++.+.++.|++||...+.. ..+
T Consensus 651 id~~~~~V---~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v------~~~- 720 (1057)
T PLN02919 651 IDFVNETV---RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT------RVF- 720 (1057)
T ss_pred EecCCCEE---EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE------EEE-
Confidence 99855442 112110000 0000 0 12346899999 456667777788999999864321 111
Q ss_pred ecCCCCeEEEEE-EEEeeccCCeEEEEEccCCCEE-EEEecCCeEEEEecCCCeeEEeee-----------cc--cC---
Q 003360 328 GSKKGNSHIIHS-VKVMKINGSIISLNMNRNSQHL-AVGSDQGYVYLLDTEGPTVLYQKH-----------IA--SD--- 389 (826)
Q Consensus 328 ~s~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~l-asGs~dG~V~vwD~~~~~~l~~~~-----------~~--~~--- 389 (826)
..++......+ ......-.....|+++|+|..| ++-+.++.|++||+.++....... .. .+
T Consensus 721 -~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 721 -SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred -ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 11111000000 0000011236789999999844 555667999999998765321110 00 00
Q ss_pred --CCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 390 --ISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 390 --~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
.-.....++|.+ ++.++++-+.+++|++||..++...
T Consensus 800 ~~~l~~P~Gvavd~------dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 800 EVLLQHPLGVLCAK------DGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred hhhccCCceeeEeC------CCcEEEEECCCCEEEEEECCCCeEE
Confidence 001234667766 5777778888999999999876654
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.0017 Score=74.46 Aligned_cols=184 Identities=18% Similarity=0.181 Sum_probs=114.2
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeC-CCCceeeeee
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDV-SCPLFLLILS 270 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~ 270 (826)
..++|++++ ++.++.|. +|.+.+..........+ .|.. ....|++++||+.||+|.|-.+ +.+.. .+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~~~~--~~s~----~~~~Gey~asCS~DGkv~I~sl~~~~~~---~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNPKTNF--DHSS----SILEGEYVASCSDDGKVVIGSLFTDDEI---TQ 108 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcccccc--cccc----cccCCceEEEecCCCcEEEeeccCCccc---ee
Confidence 345555544 35566666 77777765443221111 1111 2457899999999999999988 44441 11
Q ss_pred cccccccccccCCCCeEEEEEeCC-----CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGT-----SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~-----~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
.. -..++.+|+++|+ ++.+++|+.-| |.++.-+--.. ++ . +.....
T Consensus 109 ~d---------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn------------k~--~-----v~l~~~ 159 (846)
T KOG2066|consen 109 YD---------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN------------KD--S-----VVLSEG 159 (846)
T ss_pred Ee---------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC------------cc--c-----eeeecC
Confidence 11 1258999999998 67899999999 77775331000 00 1 223334
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCC---CCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI---SSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~---~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
.|+|.++.|. |.++|-++++| |+|+|+...+.+......... ..-...+.|.+ ...|+.| +..+|+
T Consensus 160 eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-------~~~LVIG-W~d~v~ 228 (846)
T KOG2066|consen 160 EGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-------EDRLVIG-WGDSVK 228 (846)
T ss_pred ccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC-------CCeEEEe-cCCeEE
Confidence 7899999997 66899999998 699999998888444332211 01122345544 4555554 455677
Q ss_pred EEECC
Q 003360 423 VLDSD 427 (826)
Q Consensus 423 iwd~~ 427 (826)
|..++
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 77776
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.007 Score=70.07 Aligned_cols=212 Identities=14% Similarity=0.148 Sum_probs=132.6
Q ss_pred CEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCc-cee-eCCCC-CEEEEEECCCc-----EEEEeCC---
Q 003360 194 SITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDG-SQS-HSKVK-NLFITGHSDGA-----INFWDVS--- 261 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~-V~~-~s~~~-~~l~Tgs~DGt-----VriWD~s--- 261 (826)
.|+| +++.+..++.|. +|.|.+++.+......+ ..+..+ |.. +.-++ ++|++-+.|+. |+|||+.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~~~~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSFQLIRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccceeeehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4444 577788888888 99999888776554555 445555 444 44444 68888777754 8999992
Q ss_pred CCc-eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 262 CPL-FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 262 ~~~-~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
... .++++..+-.. ..+.....++++++.+.+-..+|+|-.+|.|..+.=.--.. .+... .
T Consensus 104 ~n~sP~c~~~~ri~~-~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD-------------rgsr~----~ 165 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFT-IKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD-------------RGSRQ----D 165 (933)
T ss_pred CCCCcceeeeeeeec-cCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc-------------cccce----e
Confidence 112 22332222110 00112347899999999999999999999998875321110 11110 1
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
-......+||.|++..++..++....-..|.+|.+.+.... ....+.+..++.|..|++. ...+++++ +..
T Consensus 166 ~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~--~~~ld~~G~~lnCss~~~~------t~qfIca~-~e~ 236 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPS--LKVLDNNGISLNCSSFSDG------TYQFICAG-SEF 236 (933)
T ss_pred eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcc--eeeeccCCccceeeecCCC------CccEEEec-Cce
Confidence 12233678999999999987444444557899999765533 2334567778888888873 33355554 456
Q ss_pred EEEEECCCCceEEee
Q 003360 421 VLVLDSDNGNMLSTN 435 (826)
Q Consensus 421 V~iwd~~tg~~i~~~ 435 (826)
+.+|+...-+.-.++
T Consensus 237 l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 237 LYFYDSDGRGPCFAF 251 (933)
T ss_pred EEEEcCCCcceeeee
Confidence 899998743333344
No 306
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.60 E-value=6.3e-05 Score=65.11 Aligned_cols=48 Identities=29% Similarity=0.354 Sum_probs=43.5
Q ss_pred hHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003360 775 SVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHD 822 (826)
Q Consensus 775 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~ 822 (826)
......-+++.||||||+.|++||++|+++|+.|.+-|++|-++|.-+
T Consensus 17 ~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~ 64 (89)
T PF00957_consen 17 NIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWR 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 556667789999999999999999999999999999999999988644
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.59 E-value=0.012 Score=70.83 Aligned_cols=188 Identities=14% Similarity=0.113 Sum_probs=115.8
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV- 222 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~- 222 (826)
+..+++.+..|.+++.|..+. ...-+...+..|.+++|+||...++... ++++.+.....
T Consensus 80 ~~~i~v~~~~G~iilvd~et~------------------~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 80 TNSICVITALGDIILVDPETL------------------ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred cceEEEEecCCcEEEEccccc------------------ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence 467889999999999876662 1122456778999999999999998876 66665542110
Q ss_pred --------------Cceeecccc------------------------------cCCccee-eCCCCCEEEEE-----ECC
Q 003360 223 --------------PPLLDFETK------------------------------LKDGSQS-HSKVKNLFITG-----HSD 252 (826)
Q Consensus 223 --------------~~~~~~~~~------------------------------h~g~V~~-~s~~~~~l~Tg-----s~D 252 (826)
.......|+ +.+.+.- |.-||+++|+. ..-
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 001111122 1111112 88899999883 222
Q ss_pred CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE---eCCCcEEEEEeCCCCCccccceEEEeec
Q 003360 253 GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG---DQSGMVRIFKLKYEPHAIENSFLSFTGS 329 (826)
Q Consensus 253 GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg---s~dg~V~iwd~~~~~~~~~~~~~~i~~s 329 (826)
..|||||-.+... . .. + ....-=.+++|-|.|..+++- ..|+.|.+|.-++-..
T Consensus 222 RkirV~drEg~Ln-s---~s---e----~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h------------ 278 (1265)
T KOG1920|consen 222 RKIRVYDREGALN-S---TS---E----PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH------------ 278 (1265)
T ss_pred eeEEEecccchhh-c---cc---C----cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc------------
Confidence 7999999863221 1 00 0 011233589999999888875 3345788877542211
Q ss_pred CCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE---EecCCeEEEEecCCCe
Q 003360 330 KKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV---GSDQGYVYLLDTEGPT 379 (826)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las---Gs~dG~V~vwD~~~~~ 379 (826)
|... +........|..|+|+.++..||+ ......|.+|-+.+..
T Consensus 279 --g~f~----l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 279 --GEFV----LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred --cccc----cCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 1000 222222344999999999999988 5555569999987654
No 308
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.56 E-value=0.0009 Score=75.55 Aligned_cols=236 Identities=11% Similarity=0.093 Sum_probs=139.6
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeE-EEec-CCcEEEeccCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFI-LSSA-DEDYSLLAKSV 222 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l-~~~~-d~~i~~w~~~~ 222 (826)
.++-+|.+++..-++|+.+.- . .+...+.+.+|...|+.+.|.+..+.+ ++++ |-.+..|+.+.
T Consensus 81 ~~~wiVsts~qkaiiwnlA~s-------s-------~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 81 KPYWIVSTSNQKAIIWNLAKS-------S-------SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred CceeEEecCcchhhhhhhhcC-------C-------ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence 355678888888788887651 0 223445678999999999999977654 5567 99999998877
Q ss_pred Cceeecccc--cCCccee-eC-CCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCC-CC
Q 003360 223 PPLLDFETK--LKDGSQS-HS-KVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SR 296 (826)
Q Consensus 223 ~~~~~~~~~--h~g~V~~-~s-~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~ 296 (826)
+...-+.+. |++.-.- |+ .+++.+|+.| ..-|++||. .+.. +++.++ .|-..|..++|..- -.
T Consensus 147 p~~p~ys~~~w~s~asqVkwnyk~p~vlassh-g~~i~vwd~r~gs~--pl~s~K--------~~vs~vn~~~fnr~~~s 215 (1081)
T KOG0309|consen 147 PHRPFYSTSSWRSAASQVKWNYKDPNVLASSH-GNDIFVWDLRKGST--PLCSLK--------GHVSSVNSIDFNRFKYS 215 (1081)
T ss_pred CCcceeeeecccccCceeeecccCcchhhhcc-CCceEEEeccCCCc--ceEEec--------ccceeeehHHHhhhhhh
Confidence 543333221 3333322 54 4555666544 458999999 3333 334454 46667888888653 24
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-----------EEEEEe
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-----------HLAVGS 365 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-----------~lasGs 365 (826)
.+.+++.||+|+.|+..+......-.+ ..+.+|.--.+-|-|. .+-.--
T Consensus 216 ~~~s~~~d~tvkfw~y~kSt~e~~~~v--------------------tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~ 275 (1081)
T KOG0309|consen 216 EIMSSSNDGTVKFWDYSKSTTESKRTV--------------------TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLR 275 (1081)
T ss_pred hhcccCCCCceeeecccccccccceec--------------------cccCcceeccccccCceeEeccccCCeeeeecc
Confidence 678899999999999985533210000 0122233333333222 111111
Q ss_pred cCCeEEEEecCC-CeeEEeeecccCCCCCeeEEEEeecccC--CCC--CcEEEEEECCCcEEEEECCC
Q 003360 366 DQGYVYLLDTEG-PTVLYQKHIASDISSGIVSLQFETCSLQ--GFE--KNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 366 ~dG~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~~~~~--~~d--~~~l~sgs~Dg~V~iwd~~t 428 (826)
.+..-..|+..+ .+.++++ .+|...|....|...-.. .+| .-.|++=+.|.++++|.+.+
T Consensus 276 c~n~d~e~n~~~~~~pVh~F---~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 276 CENSDLEWNVFDLNTPVHTF---VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccchhhhhccccCCcceeee---cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 122223333322 2344444 378888876666543111 112 34799999999999999873
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.56 E-value=0.079 Score=55.24 Aligned_cols=215 Identities=10% Similarity=0.097 Sum_probs=118.6
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEe-eCCCeEEEecCCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLI-TGNSFILSSADEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs-~~~~~l~~~~d~~i~~w~~~~~~ 224 (826)
..+++-...|+|+.||...- .... +.. +....+.+. +++..+++...+... ++.....
T Consensus 13 ~l~~~D~~~~~i~~~~~~~~----------------~~~~--~~~--~~~~G~~~~~~~g~l~v~~~~~~~~-~d~~~g~ 71 (246)
T PF08450_consen 13 RLYWVDIPGGRIYRVDPDTG----------------EVEV--IDL--PGPNGMAFDRPDGRLYVADSGGIAV-VDPDTGK 71 (246)
T ss_dssp EEEEEETTTTEEEEEETTTT----------------EEEE--EES--SSEEEEEEECTTSEEEEEETTCEEE-EETTTTE
T ss_pred EEEEEEcCCCEEEEEECCCC----------------eEEE--Eec--CCCceEEEEccCCEEEEEEcCceEE-EecCCCc
Confidence 33445556788888887661 0111 111 225566676 565555554444433 3433333
Q ss_pred eeecccc-----cCCccee--eCCCCCEEEEEECC--------CcEEEEeCCCCceeeeeecccccccccccCCCCeEEE
Q 003360 225 LLDFETK-----LKDGSQS--HSKVKNLFITGHSD--------GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTAL 289 (826)
Q Consensus 225 ~~~~~~~-----h~g~V~~--~s~~~~~l~Tgs~D--------GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l 289 (826)
...+... ....... +.++|++++|-... |.|..++..+........ -...+.|
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~------------~~~pNGi 139 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADG------------LGFPNGI 139 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEE------------ESSEEEE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecC------------cccccce
Confidence 3333111 1111222 89999988887755 456666665222111111 1356899
Q ss_pred EEeCCCCEEEE-EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCC
Q 003360 290 YYDGTSRVLVS-GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG 368 (826)
Q Consensus 290 ~fsp~~~~Las-gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG 368 (826)
+|+|+++.|++ -+..+.|..|++...... +.. ...+ .......+..-.+++..+|.+.++....+
T Consensus 140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~----~~~--------~~~~--~~~~~~~g~pDG~~vD~~G~l~va~~~~~ 205 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNGRIWRFDLDADGGE----LSN--------RRVF--IDFPGGPGYPDGLAVDSDGNLWVADWGGG 205 (246)
T ss_dssp EEETTSSEEEEEETTTTEEEEEEEETTTCC----EEE--------EEEE--EE-SSSSCEEEEEEEBTTS-EEEEEETTT
T ss_pred EECCcchheeecccccceeEEEeccccccc----eee--------eeeE--EEcCCCCcCCCcceEcCCCCEEEEEcCCC
Confidence 99999987764 456677888887632210 000 0000 01111122378899999999888888899
Q ss_pred eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 369 YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 369 ~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
.|.++|.. ++++....+. ...+++++|.-. +...|++.+
T Consensus 206 ~I~~~~p~-G~~~~~i~~p---~~~~t~~~fgg~-----~~~~L~vTt 244 (246)
T PF08450_consen 206 RIVVFDPD-GKLLREIELP---VPRPTNCAFGGP-----DGKTLYVTT 244 (246)
T ss_dssp EEEEEETT-SCEEEEEE-S---SSSEEEEEEEST-----TSSEEEEEE
T ss_pred EEEEECCC-ccEEEEEcCC---CCCEEEEEEECC-----CCCEEEEEe
Confidence 99999997 7777555543 237899999532 456666554
No 310
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.0015 Score=73.88 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=84.8
Q ss_pred eeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC
Q 003360 238 SHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH 317 (826)
Q Consensus 238 ~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~ 317 (826)
|++..+++|+.|+.-|.|.+|+-.++.. ..+++. +....+..++.+++..++|.|+..|.|.+|.++....
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~---~~~~~~------~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEM---RKLKNE------GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhh---hccccc------CccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 3777789999999999999999866653 222321 2335667778899999999999999999999885322
Q ss_pred ccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC
Q 003360 318 AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 318 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~ 377 (826)
.. ...+. --...|...|+|++|++++..|.+|...|+|....+..
T Consensus 111 ~~--------------~~~~t-~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RD--------------LDYVT-PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred Cc--------------ceeec-cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 10 11000 00011466799999999999999999999998888766
No 311
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=6.5e-05 Score=65.86 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=37.2
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHH
Q 003360 781 ESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIA 819 (826)
Q Consensus 781 ~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 819 (826)
=+|..||||||..|.+||+.|+++|..|...|..|-+||
T Consensus 49 V~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 49 VEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999987
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.51 E-value=0.0031 Score=70.57 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=62.0
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE
Q 003360 282 SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL 361 (826)
Q Consensus 282 h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 361 (826)
....|.+.+++|+...|+.|+.||.|++||...+.. ......-.++.++|+|+|..+
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-----------------------~~~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-----------------------LLAKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-----------------------eeeeecccceEEEEcCCCcEE
Confidence 447899999999999999999999999999874311 111223347899999999999
Q ss_pred EEEecCCeEEEEecCCCeeE
Q 003360 362 AVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l 381 (826)
++|+.-|.+.+||+.-..+-
T Consensus 315 ~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 315 VVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EEEcCCceEEEEEeecCccc
Confidence 99999999999998654433
No 313
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.015 Score=66.21 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=83.4
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee---eCCCCCEEEEEECCCcEEEEeCCCCc-eee
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS---HSKVKNLFITGHSDGAINFWDVSCPL-FLL 267 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~---~s~~~~~l~Tgs~DGtVriWD~s~~~-~~~ 267 (826)
-.|.--++...+.+++.|. .|.+-+|+.........+..-..++.+ .+++..++|.|++.|.|.++-+.... ..+
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 3455556778889999988 888888876654444432222444444 89999999999999999999882221 111
Q ss_pred eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCC
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKY 314 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~ 314 (826)
++.-... ..|...|+|++|++++..|.+|...|+|.+-.+..
T Consensus 114 ~~~t~~d-----~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCD-----KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeecccc-----ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1111110 23778999999999999999999999999988875
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.47 E-value=0.0016 Score=75.43 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=119.0
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV 222 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~ 222 (826)
++..++.+.-...+..+|..... .........+.|+.++ .+++.+.+|. .|+|.+-+.+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~-----------------e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s 206 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEK-----------------ETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNS 206 (1118)
T ss_pred CCcceeecchhhheeeeecccce-----------------eeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCc
Confidence 34556666666777777777631 0010111223455554 4578888888 89988886544
Q ss_pred -CceeecccccCCcceeeCCCCCEEEEEEC---------CCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEE
Q 003360 223 -PPLLDFETKLKDGSQSHSKVKNLFITGHS---------DGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYY 291 (826)
Q Consensus 223 -~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~---------DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f 291 (826)
.....+ ..|++.+..|+-.|++|+|++. |..|+|||+ .-+.+.+ +. .+- .-.-+.|
T Consensus 207 ~~~iht~-~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P---I~--------~~~-~P~flrf 273 (1118)
T KOG1275|consen 207 FETIHTF-DAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP---IQ--------FPY-GPQFLRF 273 (1118)
T ss_pred Cceeeee-eccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCC---cc--------ccc-Cchhhhh
Confidence 344445 7899999999999999999874 678899998 3333222 11 111 2245678
Q ss_pred eCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecCCe
Q 003360 292 DGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQGY 369 (826)
Q Consensus 292 sp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~dG~ 369 (826)
+|. ...+|+++..|...+-|..+-... +.+ +... .....+.++++|++|+.+|.|..+|.
T Consensus 274 ~Psl~t~~~V~S~sGq~q~vd~~~lsNP-----------~~~-------~~~v~p~~s~i~~fDiSsn~~alafgd~~g~ 335 (1118)
T KOG1275|consen 274 HPSLTTRLAVTSQSGQFQFVDTATLSNP-----------PAG-------VKMVNPNGSGISAFDISSNGDALAFGDHEGH 335 (1118)
T ss_pred cccccceEEEEecccceeeccccccCCC-----------ccc-------eeEEccCCCcceeEEecCCCceEEEecccCc
Confidence 885 567899999999988884321110 011 1122 22334999999999999999999999
Q ss_pred EEEEe
Q 003360 370 VYLLD 374 (826)
Q Consensus 370 V~vwD 374 (826)
|.+|-
T Consensus 336 v~~wa 340 (1118)
T KOG1275|consen 336 VNLWA 340 (1118)
T ss_pred Eeeec
Confidence 99997
No 315
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.44 E-value=0.15 Score=57.33 Aligned_cols=154 Identities=13% Similarity=0.173 Sum_probs=86.4
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCC-CCeEEEEEeC--CCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG-IPLTALYYDG--TSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~-~~V~~l~fsp--~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
..++.++.+|.+...|...... +...+..... ..+. .....+.-+| .+..+++++.+|.+..+|..++...
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~--~W~~~~~~~~--~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~-- 279 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQL--IWQQRISQPT--GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV-- 279 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChh--hheeccccCC--CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE--
Confidence 4566778899999888843331 1111100000 0000 0000111112 2456777788899999998754321
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
+ .... +....+.. .+..|.+++.+|.|..+|..+++.+........ ....+...
T Consensus 280 ---W--------------~~~~----~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--~~~~sp~v- 333 (394)
T PRK11138 280 ---W--------------KREY----GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH--RLLTAPVL- 333 (394)
T ss_pred ---E--------------eecC----CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCC--CcccCCEE-
Confidence 0 0100 11111222 355788889999999999999988854432111 01111111
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
.+..|++++.||.|.++|..+|+.+....
T Consensus 334 -------~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 334 -------YNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred -------ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 15678899999999999999999887753
No 316
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.43 E-value=0.24 Score=55.65 Aligned_cols=192 Identities=11% Similarity=0.149 Sum_probs=99.7
Q ss_pred CeEEEec-CCcEEEeccCCCce-eecccccCCccee-eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccc
Q 003360 205 SFILSSA-DEDYSLLAKSVPPL-LDFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFS 280 (826)
Q Consensus 205 ~~l~~~~-d~~i~~w~~~~~~~-~~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~ 280 (826)
..++.+. ++.+..++...... ... ...+.+.+ -.-.+..++.+..||.|.-+|. ++.. +...... ...+.
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~--~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~---~W~~~~~-~~~~~ 194 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQT--KVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAV---KWTVNLD-VPSLT 194 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccc--cCCCceecCCEEECCEEEEECCCCEEEEEEccCCCE---eeeecCC-CCccc
Confidence 3444444 77777776543322 222 11222322 1112346667888999999999 4444 2323211 00000
Q ss_pred --cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee-ccCCeEEEEEccC
Q 003360 281 --LSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-INGSIISLNMNRN 357 (826)
Q Consensus 281 --~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~~~~V~~l~~s~~ 357 (826)
....++. .+..++.++.+|.+..+|..++...-...+. .+.+.. .+ -+... ...++ + .
T Consensus 195 ~~~~~sP~v------~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~----~~~~~~-~~--~~~~~~~~sP~----v--~ 255 (394)
T PRK11138 195 LRGESAPAT------AFGGAIVGGDNGRVSAVLMEQGQLIWQQRIS----QPTGAT-EI--DRLVDVDTTPV----V--V 255 (394)
T ss_pred ccCCCCCEE------ECCEEEEEcCCCEEEEEEccCChhhheeccc----cCCCcc-ch--hcccccCCCcE----E--E
Confidence 0111211 1235667778888888888755331100000 000000 00 00000 01111 1 2
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
+..|.+++.+|.+..+|..+++.++...... ...+ .. ++..+++++.+|.+..+|..+|+.+-.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-----~~~~--~~------~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS-----VNDF--AV------DGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC-----ccCc--EE------ECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 4467788889999999999999886554211 1111 11 367888899999999999999987644
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0081 Score=63.89 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=70.8
Q ss_pred cCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-
Q 003360 281 LSGIPLTALYYDGTSR-VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS- 358 (826)
Q Consensus 281 ~h~~~V~~l~fsp~~~-~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g- 358 (826)
.++..|..|+|+|..+ ++..++.+.+|+|.|+++... +.......++.+.+|.-+.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~----------------------vssy~a~~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV----------------------VSSYIAYNQIWSCCWDLDER 248 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEeccccee----------------------eeheeccCCceeeeeccCCc
Confidence 5668899999999887 788999999999999985433 2222335679999998654
Q ss_pred CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 359 QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 359 ~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
.++..|..+|.|.|||++.++-.+......-...+|..++..+
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~ 291 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQ 291 (463)
T ss_pred ceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccC
Confidence 5677788999999999998865422221112344666665544
No 318
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0085 Score=63.74 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=55.8
Q ss_pred ecccCCCEEEEEEeeCCCeEE-Eec-CCcEEEeccCCCceeecccccCCccee--eCCC-CCEEEEEECCCcEEEEeCCC
Q 003360 188 MPFLDSSITAMKLITGNSFIL-SSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKV-KNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s~ 262 (826)
++.|...|..++|+|....|+ .++ +..|++.+............+ ..+++ |.-+ .++|..|-.+|.|.|||+..
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 678889999999999998544 466 889999876554443332444 55666 6544 56889999999999999944
Q ss_pred Cc
Q 003360 263 PL 264 (826)
Q Consensus 263 ~~ 264 (826)
++
T Consensus 268 ~~ 269 (463)
T KOG1645|consen 268 PE 269 (463)
T ss_pred CC
Confidence 43
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.0044 Score=71.09 Aligned_cols=108 Identities=13% Similarity=0.184 Sum_probs=75.7
Q ss_pred EEEEEeeCCCeEEEec-----CCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeee
Q 003360 196 TAMKLITGNSFILSSA-----DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILS 270 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~-----d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~ 270 (826)
+..+|+|..+.++.++ .|.|.+|-....+-.....|....-.||||..-+|+.|-.-|.+.+|....... .+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~---ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET---HT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee---ee
Confidence 3445666666666543 366777733322222222222222244999999999999999999999944442 22
Q ss_pred cccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeC
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~ 313 (826)
+. ..|..+|+.+.|+++|..|+++..-|.|.+|+..
T Consensus 96 v~-------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VV-------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ec-------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 22 4688999999999999999999999999999876
No 320
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.11 Score=57.77 Aligned_cols=109 Identities=8% Similarity=0.079 Sum_probs=72.1
Q ss_pred CCeEEEEEeCCCCEEEEEeC---CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCE
Q 003360 284 IPLTALYYDGTSRVLVSGDQ---SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQH 360 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~---dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 360 (826)
..|...+|-|.|..+++-+. ..+|.+|.++++... .. +.........+.+.|+|.|++
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~--------------~~-----lVk~~dk~~~N~vfwsPkG~f 506 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK--------------PS-----LVKELDKKFANTVFWSPKGRF 506 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc--------------hh-----hhhhhcccccceEEEcCCCcE
Confidence 57889999999988776433 347888888743211 00 111111345788999999999
Q ss_pred EEEEe---cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 361 LAVGS---DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 361 lasGs---~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
++++. ..|.+.++|+.-..+..+. .......+.+.|.|. |+|++++++-..
T Consensus 507 vvva~l~s~~g~l~F~D~~~a~~k~~~---~~eh~~at~veWDPt------GRYvvT~ss~wr 560 (698)
T KOG2314|consen 507 VVVAALVSRRGDLEFYDTDYADLKDTA---SPEHFAATEVEWDPT------GRYVVTSSSSWR 560 (698)
T ss_pred EEEEEecccccceEEEecchhhhhhcc---CccccccccceECCC------CCEEEEeeehhh
Confidence 88764 5788999998743333111 122334567899995 999999987554
No 321
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.27 E-value=0.073 Score=60.14 Aligned_cols=187 Identities=10% Similarity=0.030 Sum_probs=102.2
Q ss_pred CEEEEEEeeCCCe-EEEec-C-CcEEEe--ccCCCceeecccccCCccee--eCCCCCEEE-EEECCC--cEEEEeCCCC
Q 003360 194 SITAMKLITGNSF-ILSSA-D-EDYSLL--AKSVPPLLDFETKLKDGSQS--HSKVKNLFI-TGHSDG--AINFWDVSCP 263 (826)
Q Consensus 194 ~Vt~~~fs~~~~~-l~~~~-d-~~i~~w--~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DG--tVriWD~s~~ 263 (826)
.+..-.|+|+++. ++..+ + +.-.+| +........+ ....+.+.. |+|||+.|+ +.+.+| .|.++|+.+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6677899999985 55444 3 333444 4433333333 223343333 999998555 444454 4666677555
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCc--EEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGM--VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~--V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
.... +. .+........|+||++.|+-.+ ..|. |.++|+.++.. .. +
T Consensus 268 ~~~~---LT--------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-----------------~r---l 316 (419)
T PRK04043 268 TLTQ---IT--------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-----------------EQ---V 316 (419)
T ss_pred cEEE---cc--------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe-----------------Ee---C
Confidence 4322 21 1111223457999998776555 4454 44445542211 00 1
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecC---------CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcE
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQ---------GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF 411 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~d---------G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~ 411 (826)
.. .+. ....|+|+|+.++..... ..|.+.|+.++.... +... .......|+| |+..
T Consensus 317 t~---~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~---LT~~--~~~~~p~~SP------DG~~ 381 (419)
T PRK04043 317 VF---HGK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR---LTAN--GVNQFPRFSS------DGGS 381 (419)
T ss_pred cc---CCC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE---CCCC--CCcCCeEECC------CCCE
Confidence 11 111 124899999988876643 368888988776431 1111 1222467887 6887
Q ss_pred EEEEECCC---cEEEEECC
Q 003360 412 LVIATKDS---SVLVLDSD 427 (826)
Q Consensus 412 l~sgs~Dg---~V~iwd~~ 427 (826)
|+..+.++ .+.++++.
T Consensus 382 I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 382 IMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred EEEEEccCCcEEEEEEecC
Confidence 76665433 36677775
No 322
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.26 E-value=0.088 Score=54.28 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=88.1
Q ss_pred CCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeec
Q 003360 251 SDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS 329 (826)
Q Consensus 251 ~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s 329 (826)
.+|+|..||. ++..+ ...... .......+. ..+++..+++++.++.|..||..++... ..
T Consensus 1 ~~g~l~~~d~~tG~~~---W~~~~~------~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~-----W~---- 61 (238)
T PF13360_consen 1 DDGTLSALDPRTGKEL---WSYDLG------PGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVL-----WR---- 61 (238)
T ss_dssp -TSEEEEEETTTTEEE---EEEECS------SSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEE-----EE----
T ss_pred CCCEEEEEECCCCCEE---EEEECC------CCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEE-----EE----
Confidence 3789999999 55542 222211 001122211 2335667888899999999998754321 10
Q ss_pred CCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee-ecccCCCCCeeEEEEeecccCCCC
Q 003360 330 KKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK-HIASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~-~~~~~~~~~V~sl~f~~~~~~~~d 408 (826)
.. ..+.+.... ...+..+++++.++.|+.+|..++++++.. ................. +
T Consensus 62 ----------~~---~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~------~ 121 (238)
T PF13360_consen 62 ----------FD---LPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV------D 121 (238)
T ss_dssp ----------EE---CSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE------E
T ss_pred ----------ee---cccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceE------e
Confidence 11 111111111 223446788888999999999999999774 22111111112222322 2
Q ss_pred CcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 409 KNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
+..++++..++.|..+|..+|+.+..+...
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 678889999999999999999999887653
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.0002 Score=81.98 Aligned_cols=196 Identities=11% Similarity=0.080 Sum_probs=129.3
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCC--cEEEEeCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDG--AINFWDVSC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DG--tVriWD~s~ 262 (826)
+..|...-||++|+...++|+.|+ .|-|++++...+.-..-...|...|+- -+.+|..++|.+.-. -..+|++..
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 345678899999999999999999 999999987665444444678888877 667888777765543 467999932
Q ss_pred CceeeeeecccccccccccCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSG-IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~-~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
...+ .|. ..-.++.|+.....-+.|..-..+.|||+.++.... .. ++..
T Consensus 1177 -~~~~-------------~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~--ty----lt~~---------- 1226 (1516)
T KOG1832|consen 1177 -TGGP-------------RHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQ--TY----LTDT---------- 1226 (1516)
T ss_pred -ccCc-------------cccccccceeehhhhHHHHHhcccccceEEEecccCcHHH--Hh----cCcc----------
Confidence 2111 122 345688998877766777777789999999763311 00 0000
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
...+..=.+..|||+..+++ .||. +||.+.++.++.+.-... -..-.|+| .+..++.-+
T Consensus 1227 -~~~~y~~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~----~~~G~FHP------~g~eVIINS----- 1285 (1516)
T KOG1832|consen 1227 -VTSSYSNNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTD----YGGGGFHP------SGNEVIINS----- 1285 (1516)
T ss_pred -hhhhhhccccccCCCcceEe---eCce--eeeeccHHHHhhhhhhee----cccccccC------CCceEEeec-----
Confidence 00011126778999988665 6774 899999887754432111 11124666 366666544
Q ss_pred EEEECCCCceEEe
Q 003360 422 LVLDSDNGNMLST 434 (826)
Q Consensus 422 ~iwd~~tg~~i~~ 434 (826)
-|||++|-+++.+
T Consensus 1286 EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1286 EIWDMRTFKLLHS 1298 (1516)
T ss_pred hhhhhHHHHHHhc
Confidence 4899998887755
No 324
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.21 E-value=0.27 Score=51.24 Aligned_cols=203 Identities=12% Similarity=0.126 Sum_probs=113.3
Q ss_pred EEEee-CCCeEEEec-CCcEEEeccCCCceeecccccCCccee-eC-CCCCEEEEEECCCcEEEEeCCCCceeeeeeccc
Q 003360 198 MKLIT-GNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS-HS-KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQ 273 (826)
Q Consensus 198 ~~fs~-~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~-~s-~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~ 273 (826)
..|.+ ++.++++.. .+.|..|+........+.. .+.+.. +. +++.++++ ..+ .+.++|........+.....
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--~~~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~ 80 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--PGPNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPD 80 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--SSEEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEET
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--CCCceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccC
Confidence 45676 566666655 7777777655443332211 222222 55 56555554 444 45666985555444444321
Q ss_pred ccccccccCCCCeEEEEEeCCCCEEEEEeCCCc------EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC
Q 003360 274 QSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM------VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING 347 (826)
Q Consensus 274 ~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~------V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~ 347 (826)
. .......+.+++.|++++.++...... =.||.+... +... . ....-.
T Consensus 81 ~-----~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----------------~~~~----~-~~~~~~ 134 (246)
T PF08450_consen 81 G-----GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----------------GKVT----V-VADGLG 134 (246)
T ss_dssp T-----CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----------------SEEE----E-EEEEES
T ss_pred C-----CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC----------------CeEE----E-EecCcc
Confidence 0 012357889999999997777654422 234444421 1111 1 111123
Q ss_pred CeEEEEEccCCCEEE-EEecCCeEEEEecCCCee-EEeee-cc--cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 348 SIISLNMNRNSQHLA-VGSDQGYVYLLDTEGPTV-LYQKH-IA--SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 348 ~V~~l~~s~~g~~la-sGs~dG~V~vwD~~~~~~-l~~~~-~~--~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
....|+|+|+++.|. +-+..+.|..+|+..... +.... .. .......-.+++.. ++++.++.-..+.|.
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~------~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS------DGNLWVADWGGGRIV 208 (246)
T ss_dssp SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT------TS-EEEEEETTTEEE
T ss_pred cccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC------CCCEEEEEcCCCEEE
Confidence 468899999998775 556778899999864322 21111 11 11112356677776 477666666788999
Q ss_pred EEECCCCceEEeeec
Q 003360 423 VLDSDNGNMLSTNLI 437 (826)
Q Consensus 423 iwd~~tg~~i~~~~~ 437 (826)
+++.. |+.+..+..
T Consensus 209 ~~~p~-G~~~~~i~~ 222 (246)
T PF08450_consen 209 VFDPD-GKLLREIEL 222 (246)
T ss_dssp EEETT-SCEEEEEE-
T ss_pred EECCC-ccEEEEEcC
Confidence 99998 998887643
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.19 E-value=0.0037 Score=72.61 Aligned_cols=150 Identities=15% Similarity=0.206 Sum_probs=102.3
Q ss_pred cceeeCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---------C
Q 003360 235 GSQSHSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---------S 304 (826)
Q Consensus 235 ~V~~~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---------d 304 (826)
+|.-...+++++.+|+..|+|-+-|. +... ...+..|.+.|..+. -.|..|++++. |
T Consensus 179 ~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~-----------iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D 245 (1118)
T KOG1275|consen 179 GVTIMRYNNRNLFCGDTRGTVFLRDPNSFET-----------IHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMD 245 (1118)
T ss_pred ceEEEEecCcEEEeecccceEEeecCCcCce-----------eeeeeccccceeeee--ccCCeEEEeeccccccccccc
Confidence 33336677889999999999999999 4443 334567888877655 46778888865 5
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEe---cCCCee
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLD---TEGPTV 380 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD---~~~~~~ 380 (826)
-.|+|||++.-....+..+ ...-.-+.|.|.. ..+++.+..|...+.| +..+..
T Consensus 246 ~FvkVYDLRmmral~PI~~----------------------~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 246 PFVKVYDLRMMRALSPIQF----------------------PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred chhhhhhhhhhhccCCccc----------------------ccCchhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence 5688999985432211100 1111345666653 4688999999999999 444422
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
- ........+.+..+.+++ +++.|+.|-.+|.|.+|...
T Consensus 304 ~--~~~v~p~~s~i~~fDiSs------n~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 304 G--VKMVNPNGSGISAFDISS------NGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred c--eeEEccCCCcceeEEecC------CCceEEEecccCcEeeecCC
Confidence 2 111123445588899988 49999999999999999844
No 326
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0015 Score=73.02 Aligned_cols=93 Identities=17% Similarity=0.260 Sum_probs=73.0
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee-ccCCeE-EEEEccCCCEE
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-INGSII-SLNMNRNSQHL 361 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~~~~V~-~l~~s~~g~~l 361 (826)
..|--+.|+|.-.++|.+..+|.|.+++++-. . +-..+ +.-.|+ +++|.|||+++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-R----------------------lwtip~p~~~v~~sL~W~~DGkll 77 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-R----------------------LWTIPIPGENVTASLCWRPDGKLL 77 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccc-e----------------------eEeccCCCCccceeeeecCCCCEE
Confidence 57788999999999999999999999998711 1 22222 344566 99999999999
Q ss_pred EEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 362 AVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
|+|..||+|++.|..++..+.... ......|.++.|.+
T Consensus 78 aVg~kdG~I~L~Dve~~~~l~~~~--~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 78 AVGFKDGTIRLHDVEKGGRLVSFL--FSVETDISKGIWDR 115 (665)
T ss_pred EEEecCCeEEEEEccCCCceeccc--cccccchheeeccc
Confidence 999999999999999998884431 23455677777765
No 327
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.15 E-value=0.099 Score=55.25 Aligned_cols=175 Identities=20% Similarity=0.227 Sum_probs=100.7
Q ss_pred eCCCCCEEEEEEC-----CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-------CCc
Q 003360 239 HSKVKNLFITGHS-----DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-------SGM 306 (826)
Q Consensus 239 ~s~~~~~l~Tgs~-----DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-------dg~ 306 (826)
|+++|++|.|.=. .|.|-|||+.... .. ..++..|+-.-..|.+.||++.|+++.. .|.
T Consensus 58 fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~-~r--------i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR 128 (305)
T PF07433_consen 58 FSPDGRLLYTTENDYETGRGVIGVYDAARGY-RR--------IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGR 128 (305)
T ss_pred EcCCCCEEEEeccccCCCcEEEEEEECcCCc-EE--------EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCc
Confidence 9999999988644 4899999996222 11 2334456656668889999988888732 122
Q ss_pred EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-CC-------eEEEEecCCC
Q 003360 307 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QG-------YVYLLDTEGP 378 (826)
Q Consensus 307 V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG-------~V~vwD~~~~ 378 (826)
.++ ++.+ . ..++..+ ...+|....-+.+....++-.|..|++.++|. ++.|.. .| .|.+++....
T Consensus 129 ~kL-Nl~t--M--~psL~~l-d~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~ 201 (305)
T PF07433_consen 129 AKL-NLDT--M--QPSLVYL-DARSGALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGA 201 (305)
T ss_pred eec-Chhh--c--CCceEEE-ecCCCceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCc
Confidence 222 1110 0 0011111 12333322100011133456799999999985 555543 22 3445544332
Q ss_pred eeEEeeec--ccCCCCCeeEEEEeecccCCCCCcEE-EEEECCCcEEEEECCCCceEEee
Q 003360 379 TVLYQKHI--ASDISSGIVSLQFETCSLQGFEKNFL-VIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 379 ~~l~~~~~--~~~~~~~V~sl~f~~~~~~~~d~~~l-~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
-..+.... .......+-+|+++. ++..+ +++-.-+.+.+||..+|+++...
T Consensus 202 ~~~~~~p~~~~~~l~~Y~gSIa~~~------~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 202 LRLLPAPEEQWRRLNGYIGSIAADR------DGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred ceeccCChHHHHhhCCceEEEEEeC------CCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 22211110 123446788999988 46655 45557789999999999998764
No 328
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.098 Score=58.03 Aligned_cols=67 Identities=9% Similarity=0.111 Sum_probs=46.6
Q ss_pred EEEEEEeeCCCeEEEecCCcEEEeccCC-CceeecccccCCccee-eCCCCCEEEEEEC-----------CCcEEEEeC-
Q 003360 195 ITAMKLITGNSFILSSADEDYSLLAKSV-PPLLDFETKLKDGSQS-HSKVKNLFITGHS-----------DGAINFWDV- 260 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~d~~i~~w~~~~-~~~~~~~~~h~g~V~~-~s~~~~~l~Tgs~-----------DGtVriWD~- 260 (826)
=|.+.|||.|.+|++-...-|.+|-... ..+.. ..|.+-=.. |||..++|+|=+. -..++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~R--F~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQR--FYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHh--ccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 4678999999999887766678885432 22222 345554344 9999999999653 257899999
Q ss_pred CCC
Q 003360 261 SCP 263 (826)
Q Consensus 261 s~~ 263 (826)
++.
T Consensus 291 tG~ 293 (698)
T KOG2314|consen 291 TGL 293 (698)
T ss_pred ccc
Confidence 443
No 329
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.15 E-value=0.36 Score=51.12 Aligned_cols=159 Identities=14% Similarity=0.180 Sum_probs=87.0
Q ss_pred CCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 241 KVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
..++.|+.|..+| +.+++. ....... + .+...|+.+...|+-+.|++=+ |+.|.+|++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i---------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I---------LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E---------eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc
Confidence 4567899999999 888888 2222111 1 1223599999999877666553 4999999997432211
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEE--EccC-CCEEEEEecCCeEEEEecCCCe-----eEEeeecccCCC
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLN--MNRN-SQHLAVGSDQGYVYLLDTEGPT-----VLYQKHIASDIS 391 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~--~s~~-g~~lasGs~dG~V~vwD~~~~~-----~l~~~~~~~~~~ 391 (826)
... .....+.... .........+...+ -... ..+|+++. ..+|.+|.+.... ..... ...
T Consensus 71 ~~~--~~~~~~~~~~-----~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~----~lp 138 (275)
T PF00780_consen 71 TSA--PLAFPKSRSL-----PTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEI----SLP 138 (275)
T ss_pred ccc--cccccccccc-----cccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEE----EcC
Confidence 000 0000000000 00001122243333 1223 33444444 4488898887642 22222 234
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
..+.+++|.. +.+++|..++ ..+.|+.++.....
T Consensus 139 ~~~~~i~~~~--------~~i~v~~~~~-f~~idl~~~~~~~l 172 (275)
T PF00780_consen 139 DPPSSIAFLG--------NKICVGTSKG-FYLIDLNTGSPSEL 172 (275)
T ss_pred CCcEEEEEeC--------CEEEEEeCCc-eEEEecCCCCceEE
Confidence 6788888874 5566666444 88999997766443
No 330
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=97.12 E-value=0.0078 Score=52.84 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=67.4
Q ss_pred CCCcCCeEEEEEeeeCCCCceEEEEccCCcC---ccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCC
Q 003360 69 KLDKIPISSLKWVYADGKASRLYIMGASDFV---SMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQ 145 (826)
Q Consensus 69 ~~~~~pI~~l~W~~~~~~~g~lli~gg~~~~---~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~ 145 (826)
...+.||.++.|........-++.+||.... ..+.++++... + ...|.+...++||+.+..+++....++
T Consensus 10 p~pCk~I~Ki~w~~~~~~~~~iiFsGGmp~~~ygdr~~vTV~~g~--~-----~~~ldf~s~VIDF~~i~~~~~~~e~~~ 82 (105)
T PF08366_consen 10 PFPCKAINKILWRTSRNGEPFIIFSGGMPRASYGDRHCVTVMQGK--T-----HVVLDFTSRVIDFFTICESPWPNEFQD 82 (105)
T ss_pred CCCCceeeEEEEEecCCCCcEEEEeCCccccccCCCceEEEEeCC--E-----EEEEEcCCceEEEEEEcCCCCccccCC
Confidence 3568899999998854444566677885433 34677777622 1 367788999999999999988877788
Q ss_pred ceEEEeccCccEEEecchh
Q 003360 146 DSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~ 164 (826)
+.+++++.+.+|.++|+.+
T Consensus 83 P~alvVL~e~eLVvIDL~t 101 (105)
T PF08366_consen 83 PYALVVLLEEELVVIDLQT 101 (105)
T ss_pred CcEEEEEEcCcEEEEECCC
Confidence 8888888888999999876
No 331
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.11 E-value=0.17 Score=52.19 Aligned_cols=199 Identities=19% Similarity=0.208 Sum_probs=106.7
Q ss_pred eeCCCeEEEec-CCcEEEeccCCCc-eeecccccCCccee-eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccc
Q 003360 201 ITGNSFILSSA-DEDYSLLAKSVPP-LLDFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSE 276 (826)
Q Consensus 201 s~~~~~l~~~~-d~~i~~w~~~~~~-~~~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~ 276 (826)
.+++..++++. ++.+..|+..... ...+. ..+.+.. ....+..++.+..|+.|+.+|. ++..+ ........
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~---W~~~~~~~ 107 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFD--LPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVL---WSIYLTSS 107 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEE--CSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEE---EEEEE-SS
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEee--ccccccceeeecccccccccceeeeEecccCCccee---eeeccccc
Confidence 33555566654 8888888764332 22221 1222222 2334566777779999999997 55542 33210000
Q ss_pred cccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecC-CCCeEEEEEEEEeeccCCeEEEEEc
Q 003360 277 KDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSK-KGNSHIIHSVKVMKINGSIISLNMN 355 (826)
Q Consensus 277 ~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~-~~~~~~~~~~~~~~~~~~V~~l~~s 355 (826)
. ... ..........+..++++..++.|..+|.+++.. +....... .+... +. .-..+.+-...
T Consensus 108 ~---~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-----~w~~~~~~~~~~~~----~~---~~~~~~~~~~~ 171 (238)
T PF13360_consen 108 P---PAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-----LWKYPVGEPRGSSP----IS---SFSDINGSPVI 171 (238)
T ss_dssp C---TCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEE-----EEEEESSTT-SS------EE---EETTEEEEEEC
T ss_pred c---ccc-cccccCceEecCEEEEEeccCcEEEEecCCCcE-----EEEeecCCCCCCcc----ee---eecccccceEE
Confidence 0 011 111222222377888888899999999885532 11111110 00000 00 01112222223
Q ss_pred cCCCEEEEEecCCe-EEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 356 RNSQHLAVGSDQGY-VYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 356 ~~g~~lasGs~dG~-V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.++ .+.+++.+|. +.+ |+.+++.++... ... +..+ ... ++..|++++.++.|.+||..+|+.+-+
T Consensus 172 ~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~----~~~~-~~~------~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 172 SDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISG----IYSL-PSV------DGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-----ECEC-EEC------CCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred ECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCC----ccCC-cee------eCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 344 7777887885 555 999999775332 111 1111 122 478888888999999999999987643
No 332
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.00 E-value=0.051 Score=61.44 Aligned_cols=148 Identities=11% Similarity=0.136 Sum_probs=85.4
Q ss_pred eCCCCCE-EEEEEC---CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE-EeCCC--cEEEEE
Q 003360 239 HSKVKNL-FITGHS---DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS-GDQSG--MVRIFK 311 (826)
Q Consensus 239 ~s~~~~~-l~Tgs~---DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las-gs~dg--~V~iwd 311 (826)
|+|+|+. ++..+. +..|.++|+.+.....+.. ....+....|+||++.++. .+.+| .|.+++
T Consensus 195 wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-----------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 195 WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-----------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-----------CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 9999983 554333 3457888885554323221 1234566789999987664 44344 466666
Q ss_pred eCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC-C--eEEEEecCCCeeEEeeeccc
Q 003360 312 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ-G--YVYLLDTEGPTVLYQKHIAS 388 (826)
Q Consensus 312 ~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d-G--~V~vwD~~~~~~l~~~~~~~ 388 (826)
+.++.. .+.....+......|+|||+.|+..+.. | .|.++|+.+++...... .
T Consensus 264 l~~g~~----------------------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--~ 319 (419)
T PRK04043 264 TNTKTL----------------------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--H 319 (419)
T ss_pred CCCCcE----------------------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--C
Confidence 653321 1111112223455799999988877643 2 68888988776631111 1
Q ss_pred CCCCCeeEEEEeecccCCCCCcEEEEEECC---------CcEEEEECCCCce
Q 003360 389 DISSGIVSLQFETCSLQGFEKNFLVIATKD---------SSVLVLDSDNGNM 431 (826)
Q Consensus 389 ~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D---------g~V~iwd~~tg~~ 431 (826)
+. ....|+| |+..|+..+.. ..|.+.|+.+|..
T Consensus 320 g~----~~~~~SP------DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 320 GK----NNSSVST------YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CC----cCceECC------CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 11 1236777 68877666543 2567777776643
No 333
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.00 E-value=0.4 Score=54.05 Aligned_cols=177 Identities=14% Similarity=0.194 Sum_probs=89.8
Q ss_pred cEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEE
Q 003360 214 DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY 291 (826)
Q Consensus 214 ~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f 291 (826)
.|.+|+.....+....|.+ +.+.+ |..+ +.|+.-..||+++++|..+.. -+.+... ..........|.+..+
T Consensus 62 ~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~---~fsl~~~-i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF---QFSLGEE-IEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCCCEeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce---eechhhh-ccccCccccccccccc
Confidence 5888887777777777877 67766 7665 455566799999999996544 1222211 1111122233333333
Q ss_pred eCCCCEEEEEeCCCcEEEE-EeCCCCC-----cccc---------ceEE-EeecCCCCeEEE--EE--EE-E-------e
Q 003360 292 DGTSRVLVSGDQSGMVRIF-KLKYEPH-----AIEN---------SFLS-FTGSKKGNSHII--HS--VK-V-------M 343 (826)
Q Consensus 292 sp~~~~Lasgs~dg~V~iw-d~~~~~~-----~~~~---------~~~~-i~~s~~~~~~~~--~~--~~-~-------~ 343 (826)
...|-.+++ .++.+.+. ++..... ..+. .... .....+...... .+ +. . .
T Consensus 136 ~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i 213 (410)
T PF04841_consen 136 YKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQI 213 (410)
T ss_pred CCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccc
Confidence 334422222 22222222 1111000 0000 0000 001111111000 00 11 0 1
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
...+++..|++||+|++||.-..+|.+.|++..-.+++....+ ........+.|.
T Consensus 214 ~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~--~~~~~p~~~~WC 268 (410)
T PF04841_consen 214 DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT--DSKSPPKQMAWC 268 (410)
T ss_pred cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec--CcCCCCcEEEEE
Confidence 1236799999999999999999999999988766666644443 223344555554
No 334
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.97 E-value=0.46 Score=52.48 Aligned_cols=111 Identities=13% Similarity=0.157 Sum_probs=77.5
Q ss_pred CCCeEEEEEeCCCCEEEEEe--CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCE
Q 003360 283 GIPLTALYYDGTSRVLVSGD--QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQH 360 (826)
Q Consensus 283 ~~~V~~l~fsp~~~~Lasgs--~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 360 (826)
.++|...+|.|.++.|++.+ ....+.+||++.+ +++....++=..+-|||.+++
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N------------------------l~~~~Pe~~rNT~~fsp~~r~ 329 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN------------------------LRFYFPEQKRNTIFFSPHERY 329 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccc------------------------eEEecCCcccccccccCcccE
Confidence 37999999999998877654 6788999999843 334444555566789999999
Q ss_pred EEEEec---CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC------CCcEEEEECC
Q 003360 361 LAVGSD---QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK------DSSVLVLDSD 427 (826)
Q Consensus 361 lasGs~---dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~------Dg~V~iwd~~ 427 (826)
+++++- .|.|-+||..+.-.+...- .+ ..-.-+.|+| |++++.+... |..|+|||..
T Consensus 330 il~agF~nl~gni~i~~~~~rf~~~~~~--~~--~n~s~~~wsp------d~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPAGRFKVAGAF--NG--LNTSYCDWSP------DGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred EEEecCCccccceEEeccCCceEEEEEe--ec--CCceEeeccC------CceEEEecCCCcccccCcceEEEEec
Confidence 887554 4789999997765552111 11 1122345777 6887777654 6788999987
No 335
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.82 E-value=0.078 Score=47.09 Aligned_cols=104 Identities=20% Similarity=0.197 Sum_probs=71.3
Q ss_pred eEEEEEeC---C-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE
Q 003360 286 LTALYYDG---T-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL 361 (826)
Q Consensus 286 V~~l~fsp---~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 361 (826)
|++|+++. + ...|++|+.|..||+|+=.. . +....-...|++|+-...+ .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------------------~-----~~Ei~e~~~v~~L~~~~~~-~F 56 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------------------I-----VAEITETDKVTSLCSLGGG-RF 56 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------------------E-----EEEEecccceEEEEEcCCC-EE
Confidence 67777765 2 26899999999999998651 1 2333346678888888774 69
Q ss_pred EEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 362 AVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
+.|..+|+|-+|+-.. -++.. .....++++.+... .+..-.-|++|-++|.|-
T Consensus 57 ~Y~l~NGTVGvY~~~~--RlWRi----KSK~~~~~~~~~D~--~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 57 AYALANGTVGVYDRSQ--RLWRI----KSKNQVTSMAFYDI--NGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEecCCEEEEEeCcc--eeeee----ccCCCeEEEEEEcC--CCCCceEEEEEecCCeEE
Confidence 9999999999998633 23222 23345777777664 221235788888888764
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.76 E-value=0.31 Score=54.37 Aligned_cols=220 Identities=14% Similarity=0.099 Sum_probs=111.4
Q ss_pred CEEEEEEeeCCCeEEEec-CCcEEEeccC----CC-----ce-----------------eec-----------------c
Q 003360 194 SITAMKLITGNSFILSSA-DEDYSLLAKS----VP-----PL-----------------LDF-----------------E 229 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~----~~-----~~-----------------~~~-----------------~ 229 (826)
.|+.+.|.+...-++.+. .|.|.+|+.+ .+ .- ... .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 478888988888888877 7777776311 11 00 000 0
Q ss_pred cccCCccee-eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-----C---CCEEEE
Q 003360 230 TKLKDGSQS-HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-----T---SRVLVS 300 (826)
Q Consensus 230 ~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-----~---~~~Las 300 (826)
....|.|++ -..+=-+++.|++||++.|.|+.++.......+... ..-......|+++.|.- | +-.|.+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~--~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRES--FLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG----T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeecccccc--ccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 112455666 334555899999999999999988885332222210 00012236789999872 2 257899
Q ss_pred EeCCCcEEEEEeCCCCC-ccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEE-EccC---------------------
Q 003360 301 GDQSGMVRIFKLKYEPH-AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLN-MNRN--------------------- 357 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~-~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~-~s~~--------------------- 357 (826)
|...|.+.+|++.-... .....+.... ..+.++|..+. |+.+
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~---------------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i 225 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGAT---------------TNHDSPILSIIPINADTGESALATISAMQGLSKGISI 225 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE-----------------SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeecc---------------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence 99999999999862111 0000111111 11222222222 1100
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
..++++++ +..++|+...+.+..+... ........+.+.+... ...+..|++-..+|.|+++.+..=+.+...
T Consensus 226 ~g~vVvvS-e~~irv~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 226 PGYVVVVS-ESDIRVFKPPKSKGAHKSF---DDPFLCSSASVVPTIS-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp -EEEEEE--SSEEEEE-TT---EEEEE----SS-EEEEEEEEEEEE--EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred CcEEEEEc-ccceEEEeCCCCcccceee---ccccccceEEEEeecc-cCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence 12344444 5568999998777664332 1112222344432110 113778899999999999999977777664
No 337
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=0.0012 Score=75.86 Aligned_cols=159 Identities=14% Similarity=0.160 Sum_probs=102.8
Q ss_pred ccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CC-c
Q 003360 231 KLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SG-M 306 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg-~ 306 (826)
.|+.+.+| |+.+.+.|+.|+..|.|+++++..+.. +..++.|+.+|+.|.=+-++..+++.+. +. .
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~----------e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM----------EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccc----------cccccccccccccccccCCcceeeeeccccCch
Confidence 36667777 999999999999999999999944431 3345789999999998888876665443 33 5
Q ss_pred EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee-e
Q 003360 307 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK-H 385 (826)
Q Consensus 307 V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~-~ 385 (826)
.-+|++..-- +..|. -..-.++.|+..-++-+.|+.-..+.|||+.++..+.+. .
T Consensus 1169 saLW~~~s~~---------------~~~Hs---------f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1169 SALWDASSTG---------------GPRHS---------FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred HHHhcccccc---------------Ccccc---------ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC
Confidence 7899987311 11110 112456788877666677777777899999998876331 1
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
-....+-.-....|+|+ ..+++ +|| .+||.+..+.+..
T Consensus 1225 ~~~~~~y~~n~a~FsP~------D~LIl---ndG--vLWDvR~~~aIh~ 1262 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPC------DTLIL---NDG--VLWDVRIPEAIHR 1262 (1516)
T ss_pred cchhhhhhccccccCCC------cceEe---eCc--eeeeeccHHHHhh
Confidence 00111111244668884 33332 355 4799886554443
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.64 E-value=0.00087 Score=74.85 Aligned_cols=202 Identities=15% Similarity=0.202 Sum_probs=117.5
Q ss_pred CCEEEEEEeeCCC--eEEEec-CCcEEEeccCCCce--eecccccCCccee--eCC-CCCEEEEEEC----CCcEEEEeC
Q 003360 193 SSITAMKLITGNS--FILSSA-DEDYSLLAKSVPPL--LDFETKLKDGSQS--HSK-VKNLFITGHS----DGAINFWDV 260 (826)
Q Consensus 193 ~~Vt~~~fs~~~~--~l~~~~-d~~i~~w~~~~~~~--~~~~~~h~g~V~~--~s~-~~~~l~Tgs~----DGtVriWD~ 260 (826)
..+.|++.+-+.+ .++.|. +|.|.+-..+.+.. ..+..+|....++ |.+ |.++||+|.. |-.+.|||.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3456666544333 444555 78777663332221 2222344555555 554 5678888853 678999999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
......|.-+...+ ......+.+++|-.+.+++.+|.....|.++|++..... .
T Consensus 137 ~s~ltvPke~~~fs-----~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~---------------------~ 190 (783)
T KOG1008|consen 137 NSLLTVPKESPLFS-----SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS---------------------V 190 (783)
T ss_pred ccccCCCccccccc-----cccccCccccccccCcchhhcccccchhhhhhhhhhhhh---------------------h
Confidence 43321111111111 112245568888889999999999999999999833110 0
Q ss_pred EEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEe-cCCCeeEEeeec--ccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 341 KVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLD-TEGPTVLYQKHI--ASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD-~~~~~~l~~~~~--~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
.......|..+.+.| .+.++++-+ ||.|.+|| .+.-+-.+..-. .......+..++|.|. ....+++.+
T Consensus 191 -~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt-----rtglla~l~ 263 (783)
T KOG1008|consen 191 -SSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT-----RTGLLAVLS 263 (783)
T ss_pred -hhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC-----Ccchhhhhc
Confidence 000122466677777 666677655 99999999 443322211110 0111224888999996 356677777
Q ss_pred CC-CcEEEEECC
Q 003360 417 KD-SSVLVLDSD 427 (826)
Q Consensus 417 ~D-g~V~iwd~~ 427 (826)
.| ++|+.+|+.
T Consensus 264 RdS~tIrlydi~ 275 (783)
T KOG1008|consen 264 RDSITIRLYDIC 275 (783)
T ss_pred cCcceEEEeccc
Confidence 66 478999876
No 339
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.61 E-value=0.98 Score=49.15 Aligned_cols=220 Identities=14% Similarity=0.168 Sum_probs=115.9
Q ss_pred EEeecCCCceeeEEEecCCCCCCCCCCceEEEecc---------C-ccEEEecchhHHHHHhhccCCCCCCCCccceeee
Q 003360 119 KLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGK---------S-GHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKM 188 (826)
Q Consensus 119 ~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~---------~-G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l 188 (826)
...++..+.+..+..+.-... ......+++|++. . |.|++|+.... +.. ..+...+.-
T Consensus 17 ~~~l~~~E~~~s~~~~~l~~~-~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~-------~~~----~~~l~~i~~ 84 (321)
T PF03178_consen 17 SFELEPNEHVTSLCSVKLKGD-STGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES-------PEN----NFKLKLIHS 84 (321)
T ss_dssp EEEEETTEEEEEEEEEEETTS----SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----------------EEEEEEE
T ss_pred EEECCCCceEEEEEEEEEcCc-cccccCEEEEEecccccccccccCcEEEEEEEEcc-------ccc----ceEEEEEEE
Confidence 345555555555554431110 0023456666653 2 89999887661 000 001111222
Q ss_pred cccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCc-eeec-ccccCCcceeeCCCCCEEEEEECCCcEEEEeC--CCCc
Q 003360 189 PFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPP-LLDF-ETKLKDGSQSHSKVKNLFITGHSDGAINFWDV--SCPL 264 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~-~~~~-~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~--s~~~ 264 (826)
....++|++++-. +..++.+....+.+|+.+... +... .+...-.+.+....+++|+.|....+|.++.+ ....
T Consensus 85 ~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~ 162 (321)
T PF03178_consen 85 TEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNK 162 (321)
T ss_dssp EEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-
T ss_pred EeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCE
Confidence 3446788888777 444666667888888554433 3332 22222344445555779999999999998855 2333
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCC-eEEEEEEEEe
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGN-SHIIHSVKVM 343 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~-~~~~~~~~~~ 343 (826)
+..+. + +.....++++.|-++...++++..+|.|.++......... .++. ... .....
T Consensus 163 l~~va--~-------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~----------~~~~~~L~--~~~~f 221 (321)
T PF03178_consen 163 LILVA--R-------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNS----------RDGDPKLE--RISSF 221 (321)
T ss_dssp EEEEE--E-------ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SST----------TTTTTBEE--EEEEE
T ss_pred EEEEE--e-------cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccc----------ccccccce--eEEEE
Confidence 32211 1 1223578999998666799999999999999987432111 1221 111 02222
Q ss_pred eccCCeEEE---EEccC--C------CEEEEEecCCeEEEE
Q 003360 344 KINGSIISL---NMNRN--S------QHLAVGSDQGYVYLL 373 (826)
Q Consensus 344 ~~~~~V~~l---~~s~~--g------~~lasGs~dG~V~vw 373 (826)
.....|+++ ++.|. + ..++.++.+|.|.+.
T Consensus 222 ~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 222 HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 335557777 54441 2 248888899988744
No 340
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.52 E-value=1.9 Score=48.20 Aligned_cols=289 Identities=12% Similarity=0.132 Sum_probs=150.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCCcee---eeeecccccccccccCCCCeEEEEEeC-----CCCEEEEEeCCCcEEEEEeC
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFL---LILSLKQQSEKDFSLSGIPLTALYYDG-----TSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~---~i~~l~~~~~~~~~~h~~~V~~l~fsp-----~~~~Lasgs~dg~V~iwd~~ 313 (826)
+...|++|+..|.+|||+....... ++.+.+ -..+|-.|..-. +...||+ -.-..+.||.+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~---------l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~ 105 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ---------LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVS 105 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe---------cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEE
Confidence 4569999999999999998433311 111111 125777776542 2334555 677788889885
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-----CCEEEEEecCCeEEEEecCCCeeEEeeeccc
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-----SQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS 388 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-----g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~ 388 (826)
...... ..+.++.+.-+.....+.....+++-|- ..++.+=+.||.+.+++-+... +...+..
T Consensus 106 ~~~g~~----------~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~ 173 (418)
T PF14727_consen 106 LVDGTV----------EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPD 173 (418)
T ss_pred ecCCCc----------ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCC
Confidence 332110 1222333222222222334445555332 2478889999999999975543 3233221
Q ss_pred CCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE---E-----------ee-----eccCCCCCcceEEE
Q 003360 389 DISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML---S-----------TN-----LIHPKKPSRALFMQ 449 (826)
Q Consensus 389 ~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i---~-----------~~-----~~~~~~~~~~lsi~ 449 (826)
---...+.|.+. .+.+++++++..+..|....=... . .. .+.-+..-.++.|.
T Consensus 174 --~llPgPl~Y~~~------tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~ 245 (418)
T PF14727_consen 174 --FLLPGPLCYCPR------TDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQ 245 (418)
T ss_pred --CCCCcCeEEeec------CCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEE
Confidence 111223677774 777888888888877764310000 0 00 00000011122222
Q ss_pred EecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeee--
Q 003360 450 ILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS-- 527 (826)
Q Consensus 450 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~-- 527 (826)
... .......+++-+++.+.+++.. |.-+..++..+. ..|+.......
T Consensus 246 v~~-------------------------~~~~~~~IvvLger~Lf~l~~~----G~l~~~krLd~~-p~~~~~Y~~~~~~ 295 (418)
T PF14727_consen 246 VVR-------------------------FSSSESDIVVLGERSLFCLKDN----GSLRFQKRLDYN-PSCFCPYRVPWYN 295 (418)
T ss_pred EEE-------------------------cCCCCceEEEEecceEEEEcCC----CeEEEEEecCCc-eeeEEEEEeeccc
Confidence 221 1224467888889998888776 444555555443 23333322211
Q ss_pred -CC-ceEEEEEEeeceEEEeccCCcccccccccc--ceeecCCCCCCCcccceeccCCCcEEEEcCCeeeeeeeecccC
Q 003360 528 -GS-DVGLMLLFTSGKFEIRSLPELSLLKETSIR--GFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFISALRQR 602 (826)
Q Consensus 528 -~~-~~~lv~~~~~G~I~i~slP~L~~l~~~sl~--~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e~~~~~~~~~~ 602 (826)
+. ...+++...+|.+.|+. +.+++-...+. .+... ..-...-+|-|+..+.+-.+++ +.++.+
T Consensus 296 ~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~---------v~~~~~~~G~IV~Ls~~G~L~v-~YLGTd 362 (418)
T PF14727_consen 296 EPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALS---------VANFNGLKGLIVSLSDEGQLSV-SYLGTD 362 (418)
T ss_pred CCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEE---------ecccCCCCceEEEEcCCCcEEE-EEeCCC
Confidence 11 23588889999999986 33333332221 11111 1111233677777777666666 777766
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.47 E-value=0.26 Score=59.06 Aligned_cols=203 Identities=13% Similarity=0.193 Sum_probs=110.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~ 376 (826)
.-..|-.+..+..||.|-... .+.....+........+|++-+.+| +||+|+.+|.||+||..
T Consensus 544 ~tflGls~n~lfriDpR~~~~----------------k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~ 606 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGN----------------KLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL 606 (794)
T ss_pred ceEEEECCCceEEeccCCCCC----------------ceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc
Confidence 456677888899999984321 0000001112234568899888888 79999999999999954
Q ss_pred CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC--CCc------eEEeeeccCCCCCcceEE
Q 003360 377 GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD--NGN------MLSTNLIHPKKPSRALFM 448 (826)
Q Consensus 377 ~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~--tg~------~i~~~~~~~~~~~~~lsi 448 (826)
+.. - .....+...||+.|..+. ||.+|++.+ +..+.+++.. .|+ +...+....+...+.+.+
T Consensus 607 g~~-A--KT~lp~lG~pI~~iDvt~------DGkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L 676 (794)
T PF08553_consen 607 GKR-A--KTALPGLGDPIIGIDVTA------DGKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQL 676 (794)
T ss_pred chh-h--hhcCCCCCCCeeEEEecC------CCcEEEEee-cceEEEEEEeeecCCccCccccccccCccCCCCCeEEec
Confidence 322 1 222346678999999988 688776544 6677787753 221 111110001111111211
Q ss_pred EEecCCCCcccCcccccc----ccccCCCCCCCC----CCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCce
Q 003360 449 QILNGQDGLARGANLSNV----AGMNKGSPKENA----VPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCC 520 (826)
Q Consensus 449 ~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~ 520 (826)
.+.+ ...+ .+.-.+.+. .| ...+..||+++..-+-+|++..+.+|...+..-.+.. .-+
T Consensus 677 ~pe~----------~~~~~~~~~~~~~Ft~a-~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g~~~~Y~ikry~--~~V 743 (794)
T PF08553_consen 677 KPEH----------VAYMQHETGKPISFTPA-KFNTGIGKQETSIVTSTGPFVVTWNFKKVKRGKKDPYQIKRYD--ENV 743 (794)
T ss_pred CHHH----------HHHHHhccCCCceeece-EEecCCCCccceEEEeccCEEEEEEHHHHhCCCCCceEEEEcC--Cce
Confidence 1110 0000 000011111 11 2346799999999999999998888776554444433 222
Q ss_pred eeEeeeeCCceEEEEEEee
Q 003360 521 WASTFYSGSDVGLMLLFTS 539 (826)
Q Consensus 521 ~~~~~~~~~~~~lv~~~~~ 539 (826)
.+..|.-+....+|+.+.|
T Consensus 744 ~~dnF~fg~d~~vival~~ 762 (794)
T PF08553_consen 744 VADNFKFGSDKNVIVALPN 762 (794)
T ss_pred EEccceeCCCCcEEEEccc
Confidence 2333333444445555444
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.45 E-value=0.64 Score=53.84 Aligned_cols=219 Identities=10% Similarity=0.050 Sum_probs=118.0
Q ss_pred cccCCCEEEEEEeeCCCeEEEec--CCc-EEE--ec-----------cCCCceeec-ccccCCccee-------eCCCCC
Q 003360 189 PFLDSSITAMKLITGNSFILSSA--DED-YSL--LA-----------KSVPPLLDF-ETKLKDGSQS-------HSKVKN 244 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~--d~~-i~~--w~-----------~~~~~~~~~-~~~h~g~V~~-------~s~~~~ 244 (826)
+.|++.++.-.=.-||++++.-. ... .|+ -. .....-..+ ++++++.|.+ ++++|+
T Consensus 126 D~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk 205 (635)
T PRK02888 126 DTHHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGK 205 (635)
T ss_pred CcCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCC
Confidence 45666665555556778777743 111 111 11 111111112 3567788877 677887
Q ss_pred EE-EEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---C------------CcEE
Q 003360 245 LF-ITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---S------------GMVR 308 (826)
Q Consensus 245 ~l-~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---d------------g~V~ 308 (826)
.+ .+.-..+.+.+.|..... ...++. .. .....++++|++.++.+.+. . ..+.
T Consensus 206 ~l~~~~ey~~~vSvID~etme--V~~qV~--------Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~v 274 (635)
T PRK02888 206 DLDDPKKYRSLFTAVDAETME--VAWQVM--------VD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVV 274 (635)
T ss_pred EeecccceeEEEEEEECccce--EEEEEE--------eC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEE
Confidence 55 344445778888874322 222222 11 13356788888888877752 1 1333
Q ss_pred EEEeCCCCCcc---------ccceEEEeecC---CCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-CCeEEEEec
Q 003360 309 IFKLKYEPHAI---------ENSFLSFTGSK---KGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-QGYVYLLDT 375 (826)
Q Consensus 309 iwd~~~~~~~~---------~~~~~~i~~s~---~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~ 375 (826)
+|++....... .+.+.-+.... .+... +.+.........+.++|||+++++++. +.+|.|+|+
T Consensus 275 vfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v----~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 275 VFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSAL----TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred EEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcce----EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 44443210000 00111111111 01111 344445566888999999998876664 899999999
Q ss_pred CCCeeEEeeec--------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 376 EGPTVLYQKHI--------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 376 ~~~~~l~~~~~--------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
.+...++...+ .-.........+|.. ++....+.--|..|..||+.+
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg------~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG------RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhhccCCccceEEEeeccCCCcceEEECC------CCCEEEeEeecceeEEEehHH
Confidence 87653221110 001122334566766 477777788899999999875
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.42 E-value=0.28 Score=55.59 Aligned_cols=179 Identities=13% Similarity=0.200 Sum_probs=93.4
Q ss_pred cccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee-eCCCCCEEEEEECCCcEEEE-eCCCCcee
Q 003360 189 PFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS-HSKVKNLFITGHSDGAINFW-DVSCPLFL 266 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriW-D~s~~~~~ 266 (826)
...+-..+.+.++|+++.++.++++.+.++.........+ ..+... |.+ ++.+|+-..+++|+|+ +......
T Consensus 29 g~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~- 102 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVV- 102 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc----CceeEEEEec-CccEEEEECCCeEEEEEcCccccc-
Confidence 3444557789999999999998888888876332111111 112222 777 5557777778999996 4422220
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN 346 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~ 346 (826)
..++ .. ..+..|-. |.+|++.+.+ .|.+||+.++.. ++.....
T Consensus 103 --k~i~--------~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~----------------------i~~i~v~ 145 (443)
T PF04053_consen 103 --KSIK--------LP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKL----------------------IRRIDVS 145 (443)
T ss_dssp ---------------S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--E----------------------EEEESS-
T ss_pred --eEEc--------CC-cccceEEc---CcEEEEECCC-CEEEEEhhHcce----------------------eeEEecC
Confidence 0111 11 23444433 7778777666 899999985432 3333322
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEecCCC------------eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 347 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP------------TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~------------~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
+|..+.|+++|.++|..+.+ .+.|++.... ... ........|.+..|.. . +++-
T Consensus 146 -~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~----~~~E~~~~IkSg~W~~-------d-~fiY 211 (443)
T PF04053_consen 146 -AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFE----LIHEISERIKSGCWVE-------D-CFIY 211 (443)
T ss_dssp -E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE----EEEEE-S--SEEEEET-------T-EEEE
T ss_pred -CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceE----EEEEecceeEEEEEEc-------C-EEEE
Confidence 38999999999999999877 5678776443 111 1112245678888874 2 5555
Q ss_pred EECCCcEEEEE
Q 003360 415 ATKDSSVLVLD 425 (826)
Q Consensus 415 gs~Dg~V~iwd 425 (826)
.+.. +++.+-
T Consensus 212 tT~~-~lkYl~ 221 (443)
T PF04053_consen 212 TTSN-HLKYLV 221 (443)
T ss_dssp E-TT-EEEEEE
T ss_pred EcCC-eEEEEE
Confidence 5544 776633
No 344
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.37 E-value=0.66 Score=47.13 Aligned_cols=112 Identities=14% Similarity=0.160 Sum_probs=75.0
Q ss_pred EeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCe
Q 003360 291 YDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGY 369 (826)
Q Consensus 291 fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~ 369 (826)
.+++. .+++.|+..+.+.--|..++...- .......|-+-++- .|.+++.|+..|.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~W----------------------e~ilg~RiE~sa~v-vgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIW----------------------EAILGVRIECSAIV-VGDFVVLGCYSGG 74 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEe----------------------ehhhCceeeeeeEE-ECCEEEEEEccCc
Confidence 34443 567788999988888887553311 00112223332222 5778999999999
Q ss_pred EEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 370 VYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 370 V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
+++.+..++...+.+..... |.+-+-.. +++..++.|+.|++.+..|..+..++..
T Consensus 75 lYfl~~~tGs~~w~f~~~~~----vk~~a~~d-----~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVILET----VKVRAQCD-----FDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred EEEEEecchhheeeeeehhh----hccceEEc-----CCCceEEEecCCCcEEEecccccceEEe
Confidence 99999999988766654322 22211111 1689999999999999999998887754
No 345
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.01 E-value=2.1 Score=43.61 Aligned_cols=143 Identities=15% Similarity=0.175 Sum_probs=84.7
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccce
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~ 323 (826)
.+++.|+..|.+.--|...+.+ ..+... +..|-+-+.- -+..++.|...|.+.+.+++++...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~------~We~il-----g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~----- 86 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNL------IWEAIL-----GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQI----- 86 (354)
T ss_pred eEEEEecCCceEEEecCCCCcE------Eeehhh-----CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhhe-----
Confidence 4677788888888888733331 111111 1122221111 3567999999999999999866331
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCe-EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeec
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSI-ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V-~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
..+.. .+.| ......+++..+..|+.|++.+..|+++..++|..++..+ +--+|.
T Consensus 87 ----------------w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~-------~f~sP~ 142 (354)
T KOG4649|consen 87 ----------------WNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG-------TFVSPV 142 (354)
T ss_pred ----------------eeeee-hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc-------eeccce
Confidence 11111 1111 1224567889999999999999999999999988765332 222333
Q ss_pred ccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 403 SLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 403 ~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
..++ ...|++++..|.|.-...+++
T Consensus 143 i~~g--~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 143 IAPG--DGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ecCC--CceEEEEeccceEEEEccCCC
Confidence 2222 344666666666655555544
No 346
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.96 E-value=1.3 Score=46.97 Aligned_cols=174 Identities=13% Similarity=0.089 Sum_probs=91.2
Q ss_pred EEEeeCCCeEEEec------CCcEEEeccCCCceeecccccCCccee----eCCCCCEEEEEEC-------CCcEEEEeC
Q 003360 198 MKLITGNSFILSSA------DEDYSLLAKSVPPLLDFETKLKDGSQS----HSKVKNLFITGHS-------DGAINFWDV 260 (826)
Q Consensus 198 ~~fs~~~~~l~~~~------d~~i~~w~~~~~~~~~~~~~h~g~V~~----~s~~~~~l~Tgs~-------DGtVriWD~ 260 (826)
..|++||++|++.- .+.|-+|+........-+++ ++||-- +.|+++.|+.+-- .|..++.=-
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~-s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP-SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec-CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 57999999999843 46799997663222222222 344422 7888877776521 133333211
Q ss_pred -CCCceeeeeecccccccc--c--ccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeE
Q 003360 261 -SCPLFLLILSLKQQSEKD--F--SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSH 335 (826)
Q Consensus 261 -s~~~~~~i~~l~~~~~~~--~--~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~ 335 (826)
..+.+..+-....+-..+ + ..|..+|..|++.+++..++..-..|.-. + ...-+...+.+...
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~--~----------~~PLva~~~~g~~~ 202 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG--D----------APPLVALHRRGGAL 202 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC--c----------cCCeEEEEcCCCcc
Confidence 111111110000000111 1 34667899999998877665543333210 0 00000000111110
Q ss_pred EEEE---EEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEee
Q 003360 336 IIHS---VKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 336 ~~~~---~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~ 384 (826)
.... -......+.|-+|+++.++.++++.| ..|.+.+||..++.++-..
T Consensus 203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 0000 00122367899999999998886655 6788999999999988433
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.95 E-value=2.4 Score=44.10 Aligned_cols=217 Identities=9% Similarity=0.081 Sum_probs=104.2
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC--
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-- 260 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-- 260 (826)
.++.....++.++|.|+...|++.. .+.|..++.....+..+.-.-.+.... +..++.++++--.++.+.+.++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 3566667799999999988888866 344544454432222221111122222 5555556665555899988888
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
.+... .......-.......+...+-.|+|.|.+..|.++-+..-..||.+..-... ..+.... .. . +
T Consensus 96 ~~~~~-~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~--~~~~~~~-~~---~-----~ 163 (248)
T PF06977_consen 96 DTTSL-DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG--FDLFVSD-DQ---D-----L 163 (248)
T ss_dssp --TT---EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S--S--EEEE--H---H-----H
T ss_pred ccccc-chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc--cceeecc-cc---c-----c
Confidence 22221 1111110000000123366889999999888888888878888888742100 0000000 00 0 0
Q ss_pred E-EeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeecccCCC------CCeeEEEEeecccCCCCCcEE
Q 003360 341 K-VMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS------SGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 341 ~-~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~------~~V~sl~f~~~~~~~~d~~~l 412 (826)
. ....-..+.+++++|. +.+++...++..|.++| .+++++....+..+.. ...-.|+|.+ +| .|
T Consensus 164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~------~G-~L 235 (248)
T PF06977_consen 164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP------DG-NL 235 (248)
T ss_dssp H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T------T---E
T ss_pred ccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC------CC-CE
Confidence 0 0011334889999885 45667777888999999 5777765555543321 2456677876 34 45
Q ss_pred EEEECCCcEEE
Q 003360 413 VIATKDSSVLV 423 (826)
Q Consensus 413 ~sgs~Dg~V~i 423 (826)
+..+.-+..++
T Consensus 236 YIvsEpNlfy~ 246 (248)
T PF06977_consen 236 YIVSEPNLFYR 246 (248)
T ss_dssp EEEETTTEEEE
T ss_pred EEEcCCceEEE
Confidence 55555444444
No 348
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.93 E-value=0.0095 Score=40.57 Aligned_cols=33 Identities=30% Similarity=0.523 Sum_probs=28.2
Q ss_pred cccccccceEEEecCCCCCEEEEEEecCcEEEEe
Q 003360 9 VYHETKQVTSACWACPIGSKVAVGYSNGEILIWG 42 (826)
Q Consensus 9 ~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd 42 (826)
...+...|.+++|. |++.++++|+.||.+++||
T Consensus 8 ~~~~~~~i~~~~~~-~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFS-PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEEC-CCCCEEEEecCCCeEEEcC
Confidence 34456789999995 5789999999999999996
No 349
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.03 Score=66.66 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=75.9
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG 364 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG 364 (826)
++..++-+-.+..++.|+..|.|-.+|+..+-+.. ..-....++|++++|+.+|.+++.|
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~--------------------~~ne~v~~~Vtsvafn~dg~~l~~G 148 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPL--------------------HQNERVQGPVTSVAFNQDGSLLLAG 148 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchh--------------------hcCCccCCcceeeEecCCCceeccc
Confidence 44444444456678999999999999998542200 0011126789999999999999999
Q ss_pred ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 365 SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 365 s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
..+|.|.+||+..++++.... .+..+++.+-+.-... ++..++++-..|.
T Consensus 149 ~~~G~V~v~D~~~~k~l~~i~---e~~ap~t~vi~v~~t~---~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 149 LGDGHVTVWDMHRAKILKVIT---EHGAPVTGVIFVGRTS---QNSKLLTSDTGGS 198 (1206)
T ss_pred cCCCcEEEEEccCCcceeeee---ecCCccceEEEEEEeC---CCcEEEEccCCCc
Confidence 999999999999988875443 4556666666554311 2345666666665
No 350
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.81 E-value=6.4 Score=47.45 Aligned_cols=164 Identities=14% Similarity=0.124 Sum_probs=88.9
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-----
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS----- 358 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g----- 358 (826)
..++....+.+...+++++.++.+...+...... ...........|.|+.++|-|
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l--------------------~e~~~~~~e~evaCLDisp~~d~~~~ 547 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGL--------------------REVSHKEFEYEVACLDISPLGDAPNK 547 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccce--------------------eeeeeheecceeEEEecccCCCCCCc
Confidence 3445555555555777777777766666652210 001122236679999999753
Q ss_pred -CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE--EECCCCceEEee
Q 003360 359 -QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV--LDSDNGNMLSTN 435 (826)
Q Consensus 359 -~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i--wd~~tg~~i~~~ 435 (826)
+++|+|.++..+.+.-...--++..... .....-..++-+... ..|..+|.++..||.+.- +|..+|..-..-
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~-l~~~~iPRSIl~~~~---e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~K 623 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLILITHEQ-LSGEIIPRSILLTTF---EGDIHYLLVALGDGALLYFVLDINTGQLSDRK 623 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcceeeeec-cCCCccchheeeEEe---eccceEEEEEcCCceEEEEEEEcccceEcccc
Confidence 3799999988776665433222211111 111222233333321 114789999999998854 455555443221
Q ss_pred eccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 436 LIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 436 ~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
..+ ...++.++..+. ......+++|+|+-.-+|+-+
T Consensus 624 k~~--lGt~P~~Lr~f~--------------------------sk~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 624 KVT--LGTQPISLRTFS--------------------------SKSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred ccc--cCCCCcEEEEEe--------------------------eCCceEEEEeCCCCEEEEecC
Confidence 111 122333333332 112358889999988888776
No 351
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.80 E-value=0.27 Score=43.70 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=60.6
Q ss_pred eeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCC
Q 003360 394 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGS 473 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~ 473 (826)
|+++++... .+...+.|++||.|..|++|+-. +.+..+ .....+.++..+.
T Consensus 2 V~al~~~d~--d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei----~e~~~v~~L~~~~--------------------- 52 (111)
T PF14783_consen 2 VTALCLFDF--DGDGENELLVGSDDFEIRVFKGD--EIVAEI----TETDKVTSLCSLG--------------------- 52 (111)
T ss_pred eeEEEEEec--CCCCcceEEEecCCcEEEEEeCC--cEEEEE----ecccceEEEEEcC---------------------
Confidence 667777764 22225789999999999999965 455442 2234445554443
Q ss_pred CCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeee-CCceEEEEEEeeceEEEe
Q 003360 474 PKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS-GSDVGLMLLFTSGKFEIR 545 (826)
Q Consensus 474 ~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~-~~~~~lv~~~~~G~I~i~ 545 (826)
.+.|+.+..+++|.+|+-. ..+.++|-.....+....-.. ....-||+.+.||+|++|
T Consensus 53 -------~~~F~Y~l~NGTVGvY~~~-------~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~R 111 (111)
T PF14783_consen 53 -------GGRFAYALANGTVGVYDRS-------QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEVR 111 (111)
T ss_pred -------CCEEEEEecCCEEEEEeCc-------ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEeC
Confidence 1235555555566666443 122222211112222111111 345679999999999876
No 352
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.75 E-value=3.9 Score=45.79 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=58.0
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCC---------------CCcE
Q 003360 347 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF---------------EKNF 411 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~---------------d~~~ 411 (826)
..+.+|+.+|.+++.|+...-|.|.++|+..+.++...+ +..+. .+.|........ .--+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK---GYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK---GYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc---cCccc--eEEEEEeecccccccccccccCCCCcceEEE
Confidence 349999999999988888888999999999988774332 22221 122222211110 0123
Q ss_pred EEEEECCCcEEEEECCCCceEEeeec
Q 003360 412 LVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 412 l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
++-+-.-|.|-||.+++|..+..+.+
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 44567789999999999999988643
No 353
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.74 E-value=0.012 Score=66.07 Aligned_cols=154 Identities=14% Similarity=0.164 Sum_probs=95.8
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEe----CCCcEEEEEeC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGD----QSGMVRIFKLK 313 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs----~dg~V~iwd~~ 313 (826)
.+.+..+++.|..+|.|-+-....+..+ ....+..+-...++++|++ |..+||.|- .|-.+.|||+.
T Consensus 66 y~~d~cIlavG~atG~I~l~s~r~~hdS--------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 66 YGNDRCILAVGSATGNISLLSVRHPHDS--------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred cCCchhhhhhccccCceEEeecCCcccc--------cceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 3445679999999999999887444321 0111234557889999988 567787773 35679999998
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCC
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSG 393 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~ 393 (826)
+.-........ +.. ..-....+++|-.+.++|.+|.....+.++|+++..... .. -....
T Consensus 138 s~ltvPke~~~---------------fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~s---vnTk~ 197 (783)
T KOG1008|consen 138 SLLTVPKESPL---------------FSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SS---VNTKY 197 (783)
T ss_pred cccCCCccccc---------------ccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hh---hhhhh
Confidence 65221000000 111 012234588898888899999999999999998542210 00 01113
Q ss_pred eeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 394 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
|..+...|. ..+++++- .||.|-+||.
T Consensus 198 vqG~tVdp~-----~~nY~cs~-~dg~iAiwD~ 224 (783)
T KOG1008|consen 198 VQGITVDPF-----SPNYFCSN-SDGDIAIWDT 224 (783)
T ss_pred cccceecCC-----CCCceecc-ccCceeeccc
Confidence 444566664 35565554 4999999993
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.72 E-value=3.4 Score=43.65 Aligned_cols=237 Identities=14% Similarity=0.178 Sum_probs=124.1
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCC
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVP 223 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~ 223 (826)
....++++++.| |++|+... + ... . .-.+...|+.+...+.-..++.-+|+.+.+++...-
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~--------~--------~~~-~-~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l 66 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSD--------P--------SKP-T-RILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSL 66 (275)
T ss_pred CCCEEEEEECCC-EEEEEecC--------C--------ccc-e-eEeecceEEEEEEecccCEEEEEcCCccEEEEchhh
Confidence 456788998888 88888722 0 000 0 112223389999999888887777888888853321
Q ss_pred ceee--------------cccccCCcceeeC----CCCCEEEEEECCCcEEEEeCCCC--ce-eeeeecccccccccccC
Q 003360 224 PLLD--------------FETKLKDGSQSHS----KVKNLFITGHSDGAINFWDVSCP--LF-LLILSLKQQSEKDFSLS 282 (826)
Q Consensus 224 ~~~~--------------~~~~h~g~V~~~s----~~~~~l~Tgs~DGtVriWD~s~~--~~-~~i~~l~~~~~~~~~~h 282 (826)
.... ...+...++..|. ..+...+......+|.+|..... .. ....++. ..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--------lp 138 (275)
T PF00780_consen 67 EPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--------LP 138 (275)
T ss_pred ccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--------cC
Confidence 1000 0112233444444 23333444444559999888432 21 1222222 22
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEE
Q 003360 283 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLA 362 (826)
Q Consensus 283 ~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~la 362 (826)
..+.+++|. +..+++|..++ ..+.|+.++... .+..... ..... ........++..+..+. +.+|+
T Consensus 139 -~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~---~l~~~~~--~~~~~----~~~~~~~~~~~~~~~~~-~e~Ll 204 (275)
T PF00780_consen 139 -DPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPS---ELLDPSD--SSSSF----KSRNSSSKPLGIFQLSD-NEFLL 204 (275)
T ss_pred -CCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCce---EEeCccC--Ccchh----hhcccCCCceEEEEeCC-ceEEE
Confidence 688899998 56788887665 667888844221 1110000 00000 00001122455555554 34444
Q ss_pred EEecCCeEEEEecCCCeeE-EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 363 VGSDQGYVYLLDTEGPTVL-YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 363 sGs~dG~V~vwD~~~~~~l-~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
++.+ .-.+.|..+.... ....+ ...+.++.+. .++|++.+.++ |-||++.+|++++++.
T Consensus 205 -~~~~-~g~fv~~~G~~~r~~~i~W----~~~p~~~~~~--------~pyli~~~~~~-iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 205 -CYDN-IGVFVNKNGEPSRKSTIQW----SSAPQSVAYS--------SPYLIAFSSNS-IEVRSLETGELVQTIP 264 (275)
T ss_pred -Eecc-eEEEEcCCCCcCcccEEEc----CCchhEEEEE--------CCEEEEECCCE-EEEEECcCCcEEEEEE
Confidence 3333 3345565432221 12222 1244455553 56787777654 9999999999988863
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.67 E-value=0.017 Score=39.30 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=28.5
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003360 281 LSGIPLTALYYDGTSRVLVSGDQSGMVRIFK 311 (826)
Q Consensus 281 ~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd 311 (826)
.|...|+++.|++.+..+++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5667999999999999999999999999996
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.29 E-value=0.17 Score=57.19 Aligned_cols=140 Identities=12% Similarity=0.113 Sum_probs=73.8
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
...+.|+++|+++.++++ .||.-.||..... .. . ..+.-...+|.+.+ .+|+
T Consensus 33 ~~p~~ls~npngr~v~V~-g~geY~iyt~~~~------------------r~----k----~~G~g~~~vw~~~n-~yAv 84 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW------------------RN----K----AFGSGLSFVWSSRN-RYAV 84 (443)
T ss_dssp S--SEEEE-TTSSEEEEE-ETTEEEEEETTTT------------------EE----E----EEEE-SEEEE-TSS-EEEE
T ss_pred cCCeeEEECCCCCEEEEE-cCCEEEEEEccCC------------------cc----c----ccCceeEEEEecCc-cEEE
Confidence 457899999999999994 5667777773210 00 1 12345667898855 5777
Q ss_pred EecCCeEEEE-ecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCC
Q 003360 364 GSDQGYVYLL-DTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKP 442 (826)
Q Consensus 364 Gs~dG~V~vw-D~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~ 442 (826)
-...++|.|+ ++.... ...... ...+..+-. |.+|.+.+.+ .|.+||..+++.+..+.+..
T Consensus 85 ~~~~~~I~I~kn~~~~~-~k~i~~----~~~~~~If~---------G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~--- 146 (443)
T PF04053_consen 85 LESSSTIKIYKNFKNEV-VKSIKL----PFSVEKIFG---------GNLLGVKSSD-FICFYDWETGKLIRRIDVSA--- 146 (443)
T ss_dssp E-TTS-EEEEETTEE-T-T---------SS-EEEEE----------SSSEEEEETT-EEEEE-TTT--EEEEESS-E---
T ss_pred EECCCeEEEEEcCcccc-ceEEcC----CcccceEEc---------CcEEEEECCC-CEEEEEhhHcceeeEEecCC---
Confidence 7778889886 332211 101111 011222211 5556666544 89999999999998853221
Q ss_pred CcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 443 SRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 443 ~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
+-.+ .|++++.+|.+++++.+.|++..
T Consensus 147 --vk~V----------------------------~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 147 --VKYV----------------------------IWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp ---EEE----------------------------EE-TTSSEEEEE-S-SEEEEEE-
T ss_pred --CcEE----------------------------EEECCCCEEEEEeCCeEEEEEec
Confidence 0111 35566789999999999998865
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.19 E-value=0.68 Score=50.37 Aligned_cols=134 Identities=19% Similarity=0.210 Sum_probs=80.4
Q ss_pred CcEEEEeCCCC-----ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEe
Q 003360 253 GAINFWDVSCP-----LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFT 327 (826)
Q Consensus 253 GtVriWD~s~~-----~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~ 327 (826)
|.|.++++... .+..+.... ..++|++|+-. .+ .|++|. .+.|.+|++.....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~---------~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~---------- 119 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTE---------VKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKT---------- 119 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEE---------ESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSS----------
T ss_pred cEEEEEEEEcccccceEEEEEEEEe---------ecCcceEhhhh-CC-EEEEee-cCEEEEEEccCccc----------
Confidence 88999998442 332222222 24789998876 33 455443 47899999985430
Q ss_pred ecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC-Ce-eEEeeecccCCCCCeeEEEEeecccC
Q 003360 328 GSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG-PT-VLYQKHIASDISSGIVSLQFETCSLQ 405 (826)
Q Consensus 328 ~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~-~~-~l~~~~~~~~~~~~V~sl~f~~~~~~ 405 (826)
... ..+......|+++... +.++++|+....|.++.+.. +. +..... +.....++++.|.+
T Consensus 120 ------l~~---~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~--d~~~~~v~~~~~l~---- 182 (321)
T PF03178_consen 120 ------LLK---KAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR--DYQPRWVTAAEFLV---- 182 (321)
T ss_dssp ------EEE---EEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE--ESS-BEEEEEEEE-----
T ss_pred ------chh---hheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe--cCCCccEEEEEEec----
Confidence 100 2222234456666665 55899999888888885543 22 321111 23345688888885
Q ss_pred CCCCcEEEEEECCCcEEEEECC
Q 003360 406 GFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 406 ~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|+..++++..+|.+.++...
T Consensus 183 --d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 183 --DEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp --SSSEEEEEETTSEEEEEEE-
T ss_pred --CCcEEEEEcCCCeEEEEEEC
Confidence 24589999999999888765
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.064 Score=60.53 Aligned_cols=68 Identities=15% Similarity=0.303 Sum_probs=52.8
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEeCCCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLT-ALYYDGTSRVLVSGDQSGMVRIFKLKYEPH 317 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~-~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~ 317 (826)
|+|.-.+||++..+|.|-+....... +.++. .++..|+ +++|.|||..||+|-.||+|++-|..++..
T Consensus 28 wnP~~dLiA~~t~~gelli~R~n~qR---lwtip--------~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 28 WNPKMDLIATRTEKGELLIHRLNWQR---LWTIP--------IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred EcCccchhheeccCCcEEEEEeccce---eEecc--------CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 77888899999999988777764322 23333 3444555 999999999999999999999999986543
No 359
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.86 E-value=0.062 Score=40.03 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=28.5
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeC
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~ 313 (826)
..|.+++|||...++|.|+.+|.|.+|++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 579999999999999999999999999985
No 360
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.63 E-value=0.081 Score=39.41 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=30.5
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
...|.+++|+|...++|.|+.+|.|.|+.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 567999999999999999999999999998 55443
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.43 E-value=11 Score=42.54 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=36.6
Q ss_pred Cccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEE
Q 003360 234 DGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL 298 (826)
Q Consensus 234 g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L 298 (826)
+.+.. .||+++++|.-..+|.+.|........ ++.+.- . .......|.||.+...+
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~--~~e~~~------~-~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK--LCEFDT------D-SKSPPKQMAWCGNDAVV 274 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccce--eEEeec------C-cCCCCcEEEEECCCcEE
Confidence 44555 899999999999999999988744432 122220 0 12456788898775433
No 362
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=0.22 Score=59.67 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=64.5
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
..++..-.+..+++|++.|.|...|.++.-.- ........++|++++|+. ||..+..|-.+|.|.+||..++
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne~v~~~Vtsvafn~------dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGP--LHQNERVQGPVTSVAFNQ------DGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccch--hhcCCccCCcceeeEecC------CCceeccccCCCcEEEEEccCC
Confidence 33333335668999999999999998764221 233345678999999998 6999999999999999999999
Q ss_pred ceEEeeeccCCCCC
Q 003360 430 NMLSTNLIHPKKPS 443 (826)
Q Consensus 430 ~~i~~~~~~~~~~~ 443 (826)
+.+..+..+.....
T Consensus 163 k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 163 KILKVITEHGAPVT 176 (1206)
T ss_pred cceeeeeecCCccc
Confidence 98887754444333
No 363
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=0.064 Score=51.70 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=39.2
Q ss_pred HhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHh
Q 003360 776 VAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAE 820 (826)
Q Consensus 776 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 820 (826)
.--.--+|+.+||||||-|-++||.|++++.+|-.-+..|.++|=
T Consensus 140 vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw 184 (217)
T KOG0859|consen 140 VMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMW 184 (217)
T ss_pred HHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHH
Confidence 333445689999999999999999999999999999999988873
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.11 E-value=17 Score=43.09 Aligned_cols=159 Identities=11% Similarity=0.032 Sum_probs=82.6
Q ss_pred CCEEEEEEeeCCCeEEEec-------CCcEEEec--cCCCceeecccccCCccee--eCCCCCEEEEEECC-CcEEEEeC
Q 003360 193 SSITAMKLITGNSFILSSA-------DEDYSLLA--KSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD-GAINFWDV 260 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-------d~~i~~w~--~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D-GtVriWD~ 260 (826)
..+...++++++..++... |..-.+|. ..... ..+..+. .... |+|+|..|++.... ..+++.+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 3577888999999887633 43446663 22211 2221221 2333 99999988887643 23444443
Q ss_pred CC-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 261 SC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 261 s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
.. ..+ .+..+....... .....|..+.|+|||..++.-. +|.|.+=-+.... +|. ..+-.
T Consensus 427 ~~~gql-~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~--------------~G~-~~l~~ 487 (591)
T PRK13616 427 PATGQL-ARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE--------------DGQ-YALTN 487 (591)
T ss_pred CCCceE-EEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC--------------CCc-eeecc
Confidence 21 221 111121110000 1235799999999999888765 4666664433211 111 11000
Q ss_pred -EEEee-ccCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 003360 340 -VKVMK-INGSIISLNMNRNSQHLAVGSDQGYVYLLD 374 (826)
Q Consensus 340 -~~~~~-~~~~V~~l~~s~~g~~lasGs~dG~V~vwD 374 (826)
..... ....+.++.|.+++. |+++..++...+|-
T Consensus 488 ~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~ 523 (591)
T PRK13616 488 PREVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWY 523 (591)
T ss_pred cEEeecccCCccccceEecCCE-EEEEecCCCCceEE
Confidence 11111 233468899999997 45666655444444
No 365
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.79 E-value=5.4 Score=44.78 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=73.0
Q ss_pred eEEEEEeCCCC-------EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC
Q 003360 286 LTALYYDGTSR-------VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS 358 (826)
Q Consensus 286 V~~l~fsp~~~-------~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 358 (826)
|+.+.+.|+.. .-++|-.|..|.=||.+.+.. ....+..+++. .....-.|.+-..+|
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~----~kl~~~q~kqy-----------~~k~nFsc~aTT~sG 442 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK----NKLAVVQSKQY-----------STKNNFSCFATTESG 442 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCc----ceeeeeecccc-----------ccccccceeeecCCc
Confidence 77777877643 235677888899999884322 11111111111 113345667777777
Q ss_pred CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 359 QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 359 ~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++|+|+.+|-||+||..... - .....+...+|+.+.... ||.+|+ |+-+..+.+.+..
T Consensus 443 -~IvvgS~~GdIRLYdri~~~-A--KTAlPgLG~~I~hVdvta------dGKwil-~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 443 -YIVVGSLKGDIRLYDRIGRR-A--KTALPGLGDAIKHVDVTA------DGKWIL-ATCKTYLLLIDTL 500 (644)
T ss_pred -eEEEeecCCcEEeehhhhhh-h--hhcccccCCceeeEEeec------cCcEEE-EecccEEEEEEEe
Confidence 79999999999999973322 1 122346778899888876 577665 4557777777764
No 366
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.73 E-value=25 Score=41.25 Aligned_cols=158 Identities=6% Similarity=0.016 Sum_probs=90.5
Q ss_pred EEEEEeeCCCeEEEec-C----CcEEEeccC-CCceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCC---cee
Q 003360 196 TAMKLITGNSFILSSA-D----EDYSLLAKS-VPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCP---LFL 266 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~-d----~~i~~w~~~-~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~---~~~ 266 (826)
..+.+++++.++++.+ + .++...+.. ......+.+. ++..+.++|++... .++.|.+.|.... ...
T Consensus 238 d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~---~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~ 312 (635)
T PRK02888 238 DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA---RIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSA 312 (635)
T ss_pred ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH---HHHHhhhCCCEEEE--CCCEEEEEECCccccCCcc
Confidence 4567788888887764 1 222222211 1122222111 11125567776555 3678999999540 111
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
.+..+. -+.....|.++||++++++++. +.+|.|+|+.+......+.+ +-.... +.....
T Consensus 313 v~~yIP---------VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~-------~~~~~v---vaevev 373 (635)
T PRK02888 313 LTRYVP---------VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI-------KPRDAV---VAEPEL 373 (635)
T ss_pred eEEEEE---------CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC-------CccceE---EEeecc
Confidence 222222 2246678999999998877655 88999999986532111110 000111 111112
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCC
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~ 377 (826)
.-.-...+|.++|....+-.-|..|..||+..
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22245568999998888889999999999876
No 367
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.55 E-value=25 Score=40.76 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=43.9
Q ss_pred cCCeEEEEecCCCeeEEeeecccCCC-----CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 366 DQGYVYLLDTEGPTVLYQKHIASDIS-----SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 366 ~dG~V~vwD~~~~~~l~~~~~~~~~~-----~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
.+|.|.-+|+.+++.+.+........ .+... .+. -..+..|++++.||.|+.+|..+|+.+-++.
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~---~~~---~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG---GSL---ATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccC---cce---EecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 46788889999999887665431100 01100 010 0136789999999999999999999997754
No 368
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.19 E-value=13 Score=37.39 Aligned_cols=123 Identities=12% Similarity=0.205 Sum_probs=74.2
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC------CCcEEEE-EeCCCC
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ------SGMVRIF-KLKYEP 316 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~------dg~V~iw-d~~~~~ 316 (826)
..|..+...+.|.+|++......+++.+. .-+.|..+.++..|.+|++==. ...+|+| +|+...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~---------Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS---------TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc---------chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 45544466678999999644433334333 1168999999999999998422 2277876 455331
Q ss_pred CccccceE-EEeec-------CC-CCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 317 HAIENSFL-SFTGS-------KK-GNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 317 ~~~~~~~~-~i~~s-------~~-~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
.. ...+. .+.+. +. +.+.. +...+...++.|++..|...-|++|+.+ ++.+|.+.....
T Consensus 100 ~~-~~~v~vRiaG~~v~~~~~~~~~~qle---iiElPl~~~p~ciaCC~~tG~LlVg~~~-~l~lf~l~~~~~ 167 (215)
T PF14761_consen 100 EE-NSPVRVRIAGHRVTPSFNESSKDQLE---IIELPLSEPPLCIACCPVTGNLLVGCGN-KLVLFTLKYQTI 167 (215)
T ss_pred cc-CCcEEEEEcccccccCCCCccccceE---EEEecCCCCCCEEEecCCCCCEEEEcCC-EEEEEEEEEEEE
Confidence 11 01111 11121 01 11222 4556667789999999977678888866 678998765443
No 369
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.18 E-value=3 Score=50.19 Aligned_cols=102 Identities=8% Similarity=0.134 Sum_probs=61.0
Q ss_pred EEEEEecCCeEEEEecCCCe--eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 360 HLAVGSDQGYVYLLDTEGPT--VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 360 ~lasGs~dG~V~vwD~~~~~--~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
-..+|-.+..+..||.|-.. ++.............+|++-. ...+|++|+.+|.|++||. .|+.-.+ .
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt-------~~G~iavgs~~G~IRLyd~-~g~~AKT--~ 613 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT-------EDGYIAVGSNKGDIRLYDR-LGKRAKT--A 613 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEec-------CCceEEEEeCCCcEEeecc-cchhhhh--c
Confidence 45678888889999998643 331111000112223333322 3788999999999999994 3533222 1
Q ss_pred cCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 438 HPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 438 ~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
-+.....++.+.. +.++.+||+.|+..+-|++..
T Consensus 614 lp~lG~pI~~iDv----------------------------t~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 614 LPGLGDPIIGIDV----------------------------TADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred CCCCCCCeeEEEe----------------------------cCCCcEEEEeecceEEEEEEe
Confidence 1222233343332 346679999999999998864
No 370
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.90 E-value=16 Score=39.52 Aligned_cols=211 Identities=14% Similarity=0.089 Sum_probs=103.8
Q ss_pred EEEeeCCCeEEEec---CCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeC--CCCceeeeeecc
Q 003360 198 MKLITGNSFILSSA---DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDV--SCPLFLLILSLK 272 (826)
Q Consensus 198 ~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~--s~~~~~~i~~l~ 272 (826)
.+++.++++++... .-.|.+-+.....+... .+..|....+....+-+.+-+.||++.-..+ .++..+. .
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~e-i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~-~--- 174 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGE-IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK-S--- 174 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEE-EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE-E---
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeee-ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe-e---
Confidence 46677777766532 33344444333222211 1112211112112245778889999887777 3433211 0
Q ss_pred cccccccccCCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEee-cCCCCeEEEEEEEEeeccCCeE
Q 003360 273 QQSEKDFSLSGIPLT-ALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG-SKKGNSHIIHSVKVMKINGSII 350 (826)
Q Consensus 273 ~~~~~~~~~h~~~V~-~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~-s~~~~~~~~~~~~~~~~~~~V~ 350 (826)
..-|.....++. .=++...+..++=-+.+|.|+--|+......... ...+.. ...... .+ .+.-.
T Consensus 175 ---t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-~~~~~t~~e~~~~-----Wr----PGG~Q 241 (342)
T PF06433_consen 175 ---TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-PWSLLTDAEKADG-----WR----PGGWQ 241 (342)
T ss_dssp ---EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-EEESS-HHHHHTT-----EE----E-SSS
T ss_pred ---ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-cccccCccccccC-----cC----Cccee
Confidence 011112222222 2244555555665788898888888744211000 000000 000000 00 22223
Q ss_pred EEEEccCCCEEEEEec--------CC--eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCC
Q 003360 351 SLNMNRNSQHLAVGSD--------QG--YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDS 419 (826)
Q Consensus 351 ~l~~s~~g~~lasGs~--------dG--~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg 419 (826)
-+++++..++|.+--. |+ .|-++|+.+++.+....+. .++.+|..+.- +.++|++.+ .++
T Consensus 242 ~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----~~~~Si~Vsqd-----~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 242 LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----HPIDSIAVSQD-----DKPLLYALSAGDG 312 (342)
T ss_dssp -EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----EEESEEEEESS-----SS-EEEEEETTTT
T ss_pred eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----CccceEEEccC-----CCcEEEEEcCCCC
Confidence 3556554444443211 11 4788899999999666542 25678888763 466787665 578
Q ss_pred cEEEEECCCCceEEee
Q 003360 420 SVLVLDSDNGNMLSTN 435 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~ 435 (826)
.+.+||..+|+.+.+.
T Consensus 313 ~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 313 TLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEETTT--EEEEE
T ss_pred eEEEEeCcCCcEEeeh
Confidence 9999999999999885
No 371
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.00 E-value=36 Score=40.27 Aligned_cols=40 Identities=18% Similarity=0.430 Sum_probs=34.0
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
++.+.-+..||++++||-=..+|.|.+.+....+++..+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 4668889999999999999999999999988777774444
No 372
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.65 E-value=28 Score=37.68 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=30.4
Q ss_pred EEEeeccCCeEEEEEccCCC-EEEE-EecCCeEEEEecCCCeeEEeee
Q 003360 340 VKVMKINGSIISLNMNRNSQ-HLAV-GSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~-~las-Gs~dG~V~vwD~~~~~~l~~~~ 385 (826)
+.-.....++.+|+.+.+.. +|.. ...+|.+.|||..+++.+.+..
T Consensus 282 v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 282 VARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 33344455688999998876 4433 3457999999999999885543
No 373
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=90.33 E-value=0.14 Score=37.21 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=33.3
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHh
Q 003360 782 SKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAE 820 (826)
Q Consensus 782 ~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 820 (826)
+|+.+|.+||=.+-+.+.-=.++|+.+..+|++||.+|-
T Consensus 1 ekil~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~ 39 (43)
T PF10979_consen 1 EKILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYG 39 (43)
T ss_pred ChHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 478889999988887766667899999999999999984
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.32 E-value=11 Score=44.63 Aligned_cols=147 Identities=20% Similarity=0.262 Sum_probs=76.9
Q ss_pred eCCCCCEEEEEE------CCCcEEEE--eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc-EEE
Q 003360 239 HSKVKNLFITGH------SDGAINFW--DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM-VRI 309 (826)
Q Consensus 239 ~s~~~~~l~Tgs------~DGtVriW--D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~-V~i 309 (826)
.+++|+.++..- .|..-.|| +..+.. .. + ..+...+.-.|+|++..+++...... +++
T Consensus 357 iSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~---l---------t~g~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 357 LSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQ---V---------LEGHSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred ECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-ee---e---------ecCCCCCCceECCCCCceEEEecCcceEEE
Confidence 899999776554 34444444 442222 11 1 11224678899999888887754322 333
Q ss_pred EEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEE---EecCCCeeEE--ee
Q 003360 310 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYL---LDTEGPTVLY--QK 384 (826)
Q Consensus 310 wd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~v---wD~~~~~~l~--~~ 384 (826)
.+.... ..+.-+.- ++.. ... ...+.|..+.|||||.++|.-. +|.|.| .....+.... ..
T Consensus 424 ~~~~~~-----gql~~~~v--d~ge-----~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~ 489 (591)
T PRK13616 424 IRDPAT-----GQLARTPV--DASA-----VAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPR 489 (591)
T ss_pred eccCCC-----ceEEEEec--cCch-----hhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccE
Confidence 332110 01110000 0000 111 2356799999999999998866 577777 5544554211 01
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
.+.......+.++.|.. ++. |++++.++
T Consensus 490 ~l~~~l~~~~~~l~W~~------~~~-L~V~~~~~ 517 (591)
T PRK13616 490 EVGPGLGDTAVSLDWRT------GDS-LVVGRSDP 517 (591)
T ss_pred EeecccCCccccceEec------CCE-EEEEecCC
Confidence 11122334467788887 344 55666544
No 375
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=90.18 E-value=0.77 Score=46.02 Aligned_cols=105 Identities=20% Similarity=0.254 Sum_probs=61.8
Q ss_pred CCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEE
Q 003360 293 GTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYL 372 (826)
Q Consensus 293 p~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~v 372 (826)
.-+..|++|+.+|.|.+|.+.... .+. + ........-.+.+..-.++.+..+|..||.||.
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~g-~~~----------d--------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~ 128 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLEG-AHS----------D--------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRA 128 (238)
T ss_pred ccCceEEeecccceEEEecCCccc-hHH----------H--------hhhcccccceeccccccccceeEEeccCCceee
Confidence 345789999999999999987211 000 0 000000111222333345667889999999999
Q ss_pred EecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 373 LDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 373 wD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
|++.-.+.+- ....|. |. ++..+++.+.|+.|.+|+......+.
T Consensus 129 ~n~~p~k~~g---~~g~h~-------~~-------~~e~~ivv~sd~~i~~a~~S~d~~~k 172 (238)
T KOG2444|consen 129 CNIKPNKVLG---YVGQHN-------FE-------SGEELIVVGSDEFLKIADTSHDRVLK 172 (238)
T ss_pred eccccCceee---eecccc-------CC-------CcceeEEecCCceEEeeccccchhhh
Confidence 9997766651 111222 22 25566666677777777766555443
No 376
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=89.64 E-value=21 Score=39.78 Aligned_cols=156 Identities=16% Similarity=0.286 Sum_probs=94.6
Q ss_pred eCCCCC-EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEeCC
Q 003360 239 HSKVKN-LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---SGMVRIFKLKY 314 (826)
Q Consensus 239 ~s~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---dg~V~iwd~~~ 314 (826)
.++.++ .+++...++.|.+.|...... +..+. -+.....++++|++..+.++.. +++|.+.|-.+
T Consensus 81 v~~~~~~vyv~~~~~~~v~vid~~~~~~--~~~~~---------vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t 149 (381)
T COG3391 81 VNPAGNKVYVTTGDSNTVSVIDTATNTV--LGSIP---------VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT 149 (381)
T ss_pred eCCCCCeEEEecCCCCeEEEEcCcccce--eeEee---------eccCCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence 445544 777777789999999633331 01111 1125568899999988877766 56666666553
Q ss_pred CCCccccceEEEeecCCCCeEEEEEEEEeec-cCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEE-eeecccCCC
Q 003360 315 EPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-NGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLY-QKHIASDIS 391 (826)
Q Consensus 315 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~-~~~~~~~~~ 391 (826)
+.. ...... ..+ ..++++|+|..+.+.. .+++|.++|.....+.. .........
T Consensus 150 ~~~----------------------~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~ 206 (381)
T COG3391 150 NKV----------------------TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG 206 (381)
T ss_pred CeE----------------------EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC
Confidence 322 111111 123 8899999999776665 78999999987666552 100001122
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECC---CcEEEEECCCCceEEe
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKD---SSVLVLDSDNGNMLST 434 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~D---g~V~iwd~~tg~~i~~ 434 (826)
.....+.+.+ ++..+++.-.. +.+...|..++.....
T Consensus 207 ~~P~~i~v~~------~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 207 TGPAGIAVDP------DGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCceEEECC------CCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 2334566666 56655554433 5888889887776654
No 377
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.48 E-value=7.1 Score=45.90 Aligned_cols=116 Identities=13% Similarity=0.124 Sum_probs=65.4
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEc--cCCCEE
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN--RNSQHL 361 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s--~~g~~l 361 (826)
...+.+.-+.-++..++-+....+.|||.+.+..+. -......+.|.++.|. |+|+.+
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~--------------------~~~f~~~~~I~dLDWtst~d~qsi 89 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEY--------------------EESFSEDDPIRDLDWTSTPDGQSI 89 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEE--------------------eeeecCCCceeeceeeecCCCCEE
Confidence 345555555545544444444579999998543211 1111336779999995 677766
Q ss_pred EEEecCCeEEEEecC-----C--C--eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 362 AVGSDQGYVYLLDTE-----G--P--TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 362 asGs~dG~V~vwD~~-----~--~--~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++-+-...|.++--. . + ..+....+......+|....|.. +..|++|+ +..+.|+|-.
T Consensus 90 LaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-------~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 90 LAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-------DGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred EEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-------CCeEEEEe-CCEEEEECCC
Confidence 655556677777431 1 1 22222333222335777777776 44555555 4567777754
No 378
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.00 E-value=16 Score=33.78 Aligned_cols=124 Identities=16% Similarity=0.318 Sum_probs=80.6
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc-----CCCEE
Q 003360 287 TALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-----NSQHL 361 (826)
Q Consensus 287 ~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-----~g~~l 361 (826)
+.-.|......|+.++..|.|.|++.......... .... +.+...+..|++|+-.+ ....|
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~---------~~~~-----i~~LNin~~italaaG~l~~~~~~D~L 67 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR---------QDSD-----ISFLNINQEITALAAGRLKPDDGRDCL 67 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCcccccccc---------ccCc-----eeEEECCCceEEEEEEecCCCCCcCEE
Confidence 34467677778999999999999987644221100 0111 55566677888887654 45678
Q ss_pred EEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 362 AVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
++|+... +..||.....-+|... ....|.++.+... ...+.+.+++|+ +..|.-||....+..
T Consensus 68 liGt~t~-llaYDV~~N~d~Fyke----~~DGvn~i~~g~~--~~~~~~l~ivGG-ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 68 LIGTQTS-LLAYDVENNSDLFYKE----VPDGVNAIVIGKL--GDIPSPLVIVGG-NCSIQGFDYEGNEIF 130 (136)
T ss_pred EEeccce-EEEEEcccCchhhhhh----CccceeEEEEEec--CCCCCcEEEECc-eEEEEEeCCCCcEEE
Confidence 8998874 6799998887775544 3456888887753 222355565555 677888887743333
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.76 E-value=6.7 Score=40.78 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=43.1
Q ss_pred eCCCCCEEEEEECC-----CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 003360 239 HSKVKNLFITGHSD-----GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIF 310 (826)
Q Consensus 239 ~s~~~~~l~Tgs~D-----GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iw 310 (826)
||++|.+|...-.| |.|-|||..... +.+.++..|+-.-..|.|.+|++.++++.. -|..-
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~f---------qrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIeth 186 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREGF---------QRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETH 186 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEeccccc---------ceecccccCCcCcceeEEecCCcEEEEeCC--ceecc
Confidence 88888877665443 788999986332 124456678877789999999999988743 34444
No 380
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.14 E-value=1.3 Score=32.06 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=26.3
Q ss_pred CCeEEEEEccCCC---EEEEEecCCeEEEEecCC
Q 003360 347 GSIISLNMNRNSQ---HLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 347 ~~V~~l~~s~~g~---~lasGs~dG~V~vwD~~~ 377 (826)
+.|.++.|||... +|+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998544 888888889999999985
No 381
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=87.96 E-value=47 Score=36.58 Aligned_cols=70 Identities=14% Similarity=0.050 Sum_probs=37.9
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccc-cccC---------CCCeEEEEEeCCCCEEEEEeCC-CcE
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKD-FSLS---------GIPLTALYYDGTSRVLVSGDQS-GMV 307 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~-~~~h---------~~~V~~l~fsp~~~~Lasgs~d-g~V 307 (826)
|+|+|+.++-.. ++.|.+++..+..... +....... +.+- -..-..+-||||++.||....| ..|
T Consensus 50 ~sP~g~~~~~v~-~~nly~~~~~~~~~~~---lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v 125 (353)
T PF00930_consen 50 WSPDGKYIAFVR-DNNLYLRDLATGQETQ---LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREV 125 (353)
T ss_dssp E-SSSTEEEEEE-TTEEEEESSTTSEEEE---SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS
T ss_pred eecCCCeeEEEe-cCceEEEECCCCCeEE---eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCC
Confidence 999999988876 5689999884333211 21110000 0000 0123578999999988876443 345
Q ss_pred EEEEe
Q 003360 308 RIFKL 312 (826)
Q Consensus 308 ~iwd~ 312 (826)
+.+.+
T Consensus 126 ~~~~~ 130 (353)
T PF00930_consen 126 PEYPL 130 (353)
T ss_dssp -EEEE
T ss_pred ceEEe
Confidence 55544
No 382
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=87.92 E-value=1.4 Score=44.20 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=57.8
Q ss_pred CCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCe-EEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 243 KNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPL-TALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 243 ~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V-~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
+.-++.|+.||.|.+|... .... ..+. ..-...| ..|.--.++.+.+++..||.||.|+...+...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~---~d~~-------~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~-- 137 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAH---SDRV-------CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL-- 137 (238)
T ss_pred CceEEeecccceEEEecCCccchH---HHhh-------hcccccceeccccccccceeEEeccCCceeeeccccCcee--
Confidence 4578999999999999983 2210 0010 0000122 22222334568999999999999998743321
Q ss_pred cceEEEeecCCCCeEEEEEEEEeecc-CCeEEEEEccCCCEEEEE--ecCCeEEEEecC
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKIN-GSIISLNMNRNSQHLAVG--SDQGYVYLLDTE 376 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~-~~V~~l~~s~~g~~lasG--s~dG~V~vwD~~ 376 (826)
-..+.|. .++..+..+..+.++++. |.|..++.|++.
T Consensus 138 -------------------g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 138 -------------------GYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred -------------------eeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 1111222 344444445555566666 666666666664
No 383
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.46 E-value=28 Score=38.89 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=20.6
Q ss_pred cCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCC
Q 003360 346 NGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGP 378 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~ 378 (826)
..-|+.|.+|.|.++|.+.+ .+|.|+.||+..+
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 34589999999999987766 5899999999765
No 384
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=87.32 E-value=28 Score=39.38 Aligned_cols=156 Identities=12% Similarity=0.066 Sum_probs=78.1
Q ss_pred CCEEEEEEeeCCCeEEEec---CC--cEEEeccCCCceeec-ccccCCcceeeCCCCCEEE-EEECCCcEEEEeC--CCC
Q 003360 193 SSITAMKLITGNSFILSSA---DE--DYSLLAKSVPPLLDF-ETKLKDGSQSHSKVKNLFI-TGHSDGAINFWDV--SCP 263 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~---d~--~i~~w~~~~~~~~~~-~~~h~g~V~~~s~~~~~l~-Tgs~DGtVriWD~--s~~ 263 (826)
..+..-+|++++..++... .+ .+.+++......... ...-....+.|+|||+.|+ +...||...||=+ .+.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 3444556777777766543 22 233333222111111 1112223334999998655 5566887776654 444
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEE-EEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV-SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La-sgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.+ ..|.. ....-+.=.|+|+|+.++ +.+..|.-.||-...... ....++ .
T Consensus 273 ~~---~~Lt~--------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~----~~~riT--------------~ 323 (425)
T COG0823 273 NL---PRLTN--------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS----QVTRLT--------------F 323 (425)
T ss_pred cc---eeccc--------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC----ceeEee--------------c
Confidence 42 11221 011112457899998766 455667666666653211 011111 1
Q ss_pred eeccCCeEEEEEccCCCEEEEEecC-Ce--EEEEecCCCe
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQ-GY--VYLLDTEGPT 379 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~d-G~--V~vwD~~~~~ 379 (826)
..+.-..-.|+|+|.+++..+.. |. |.+.|+.++.
T Consensus 324 --~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 324 --SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred --cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 11111266799999999877743 44 5555554443
No 385
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=86.87 E-value=40 Score=39.82 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=54.0
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 348 SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
.++-+.-|..++..++-+....+.|||.+.+.+.+.... .....|..+.|... +|++.+++.+-...|.++...
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst----~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTST----PDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeec----CCCCEEEEEEcCcEEEEEEcc
Confidence 345555566665445544555799999999987765543 45778999999864 268889999999999999764
No 386
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.81 E-value=41 Score=35.16 Aligned_cols=151 Identities=12% Similarity=0.075 Sum_probs=85.9
Q ss_pred CEEEEEEeeCCCeEEEec--CCc--EEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEe-C-CCCce
Q 003360 194 SITAMKLITGNSFILSSA--DED--YSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWD-V-SCPLF 265 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~--d~~--i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD-~-s~~~~ 265 (826)
.+...+.++++..++... ++. +.++.......... .+ ..+.. |++++.+.+....+...+++. . .+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 678889999998877644 443 44444333222211 11 13333 899988888777777778774 2 22221
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe---CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE-EEE
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD---QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH-SVK 341 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs---~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~-~~~ 341 (826)
. ..+... ... ..|+.+.++|||..+|.-. .++.|.+=-+..+.. +....+- ...
T Consensus 102 -~-~~v~~~-----~~~-~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~--------------g~~~~l~~~~~ 159 (253)
T PF10647_consen 102 -P-VEVDWP-----GLR-GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGD--------------GVPRRLTGPRR 159 (253)
T ss_pred -e-EEeccc-----ccC-CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCC--------------CCcceeccceE
Confidence 1 111100 011 2899999999998877655 356777766653322 1011000 011
Q ss_pred Ee-eccCCeEEEEEccCCCEEEEEecCCe
Q 003360 342 VM-KINGSIISLNMNRNSQHLAVGSDQGY 369 (826)
Q Consensus 342 ~~-~~~~~V~~l~~s~~g~~lasGs~dG~ 369 (826)
.. .....+++++|.+++.+++.+...+.
T Consensus 160 ~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 160 VAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred ecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 11 12457999999999987777665544
No 387
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.65 E-value=67 Score=38.97 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=25.8
Q ss_pred EecCCCCCCCCCCceEEEeccCccEEEecchh
Q 003360 133 IISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 133 ~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~ 164 (826)
+.....+|....+..++|+++++.|.+||...
T Consensus 149 i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 149 IKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 33344667777889999999999999999865
No 388
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=86.35 E-value=70 Score=37.82 Aligned_cols=67 Identities=10% Similarity=0.244 Sum_probs=38.2
Q ss_pred eCCCCCEEEEEECCCc-----EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-----cEE
Q 003360 239 HSKVKNLFITGHSDGA-----INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-----MVR 308 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGt-----VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-----~V~ 308 (826)
..-++.+++.|+.||. |..||........+..+. .....+..+. -++...++|+.|| +|.
T Consensus 472 a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~--------~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve 541 (571)
T KOG4441|consen 472 AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT--------SPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVE 541 (571)
T ss_pred EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc--------cccccccEEE--ECCEEEEEecccCccccceeE
Confidence 3446678899988873 777888666654432222 1112222222 2567788888776 455
Q ss_pred EEEeCCC
Q 003360 309 IFKLKYE 315 (826)
Q Consensus 309 iwd~~~~ 315 (826)
.||..++
T Consensus 542 ~ydp~~d 548 (571)
T KOG4441|consen 542 CYDPETD 548 (571)
T ss_pred EcCCCCC
Confidence 5655533
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=86.35 E-value=51 Score=35.37 Aligned_cols=185 Identities=14% Similarity=0.157 Sum_probs=88.5
Q ss_pred eCCCeEEEecCC-cEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccc
Q 003360 202 TGNSFILSSADE-DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKD 278 (826)
Q Consensus 202 ~~~~~l~~~~d~-~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~ 278 (826)
.++...+++..+ .++--+....+.... .+-.+.+.. .+++|++++++..-....-||.-.....+ ..
T Consensus 113 ~~~~~~l~~~~G~iy~T~DgG~tW~~~~-~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~---~~------ 182 (302)
T PF14870_consen 113 GDGSAELAGDRGAIYRTTDGGKTWQAVV-SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQP---HN------ 182 (302)
T ss_dssp ETTEEEEEETT--EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EE---EE------
T ss_pred CCCcEEEEcCCCcEEEeCCCCCCeeEcc-cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceE---Ec------
Confidence 344444444433 333334444343322 333455655 78999988888666666778873333222 00
Q ss_pred cccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC-CeEEEEEccC
Q 003360 279 FSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING-SIISLNMNRN 357 (826)
Q Consensus 279 ~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~-~V~~l~~s~~ 357 (826)
......|..|.|.|++.+.+++ ..|.|+.=+.... .. .+++. ..-....+ .+..|+|.++
T Consensus 183 -r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~-------~~--~w~~~--------~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 183 -RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD-------GE--TWSEP--------IIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp ---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE-------EE--EE-----------B-TTSS--S-EEEEEESSS
T ss_pred -cCccceehhceecCCCCEEEEe-CCcEEEEccCCCC-------cc--ccccc--------cCCcccCceeeEEEEecCC
Confidence 1123689999999998876655 8888877662210 00 00000 00001122 3899999999
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
....|+|. .|++ +.....++-=...............+.|.. .+.-++.+.+|.|.-|
T Consensus 244 ~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-------~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 244 NEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN-------PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp S-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE-------TTEEEEE-STTEEEEE
T ss_pred CCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcC-------CCceEEECCCcEEEEe
Confidence 87777665 4444 445555543322222234455688899987 5667778888877654
No 390
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=86.34 E-value=52 Score=35.45 Aligned_cols=110 Identities=13% Similarity=0.126 Sum_probs=65.9
Q ss_pred CeEEEEEeCCCCEEEEEeCC-CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 285 PLTALYYDGTSRVLVSGDQS-GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~d-g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
.-+.|+|+||++.|..+... +.|.-|++...... ..+.... +......+..-.++...+|.+.++
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~-----------~~~~~~~---~~~~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP-----------IGGRRGF---VDFDEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc-----------cCCcceE---EEccCCCCCCCceEEeCCCCEEEe
Confidence 34689999999888887664 66777776521000 0111000 111123455677888888987766
Q ss_pred EecCC-eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 364 GSDQG-YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 364 Gs~dG-~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
+..+| .|.+|+.. ++.+....+.. ..+++++|.-. +.+.|++.+.
T Consensus 230 a~~~g~~v~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~-----~~~~L~iTs~ 275 (307)
T COG3386 230 AVWGGGRVVRFNPD-GKLLGEIKLPV---KRPTNPAFGGP-----DLNTLYITSA 275 (307)
T ss_pred cccCCceEEEECCC-CcEEEEEECCC---CCCccceEeCC-----CcCEEEEEec
Confidence 66665 89999998 77775444322 46677777652 3455554443
No 391
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.18 E-value=7.2 Score=47.72 Aligned_cols=96 Identities=8% Similarity=0.022 Sum_probs=63.8
Q ss_pred CCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEE
Q 003360 284 IPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLA 362 (826)
Q Consensus 284 ~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~la 362 (826)
.-+.++.|.|.- ...++...|+.|++..+..... . +..++....++|++|+|-|+.++
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~----------------~-----v~s~p~t~~~Tav~WSprGKQl~ 214 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ----------------N-----VTSFPVTNSQTAVLWSPRGKQLF 214 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhh----------------h-----hcccCcccceeeEEeccccceee
Confidence 456788888864 3567888899999888763211 0 22234456689999999999999
Q ss_pred EEecCCeEEEEecCCCeeEEeeecccC-CCCCeeEEEEee
Q 003360 363 VGSDQGYVYLLDTEGPTVLYQKHIASD-ISSGIVSLQFET 401 (826)
Q Consensus 363 sGs~dG~V~vwD~~~~~~l~~~~~~~~-~~~~V~sl~f~~ 401 (826)
+|...|++.-|-..- .+......... -...|.+|.|..
T Consensus 215 iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 215 IGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred EecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEec
Confidence 999999987776533 22212221111 135688888876
No 392
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=85.82 E-value=96 Score=38.02 Aligned_cols=171 Identities=12% Similarity=0.047 Sum_probs=89.8
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC------CEEEEE
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS------RVLVSG 301 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~------~~Lasg 301 (826)
|...++++. .+.+...++.++.++.+-..++....+.....- .-...|.|+.++|.+ +++++|
T Consensus 484 W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~---------~~e~evaCLDisp~~d~~~~s~~~aVG 554 (1096)
T KOG1897|consen 484 WRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHK---------EFEYEVACLDISPLGDAPNKSRLLAVG 554 (1096)
T ss_pred ccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeh---------eecceeEEEecccCCCCCCcceEEEEE
Confidence 544555554 444444566666666666666632222111111 112689999999752 489999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE-EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS-VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
.++..+.+--+-.+ ..... +. +.....+..|.-.+|--|..+|.++..||.+.-+-+...+.
T Consensus 555 ~Ws~~~~~l~~~pd----------------~~~~~-~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg 617 (1096)
T KOG1897|consen 555 LWSDISMILTFLPD----------------LILIT-HEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTG 617 (1096)
T ss_pred eecceEEEEEECCC----------------cceee-eeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccc
Confidence 99888776655421 11100 00 00011133455566666678999999999987665544443
Q ss_pred EEeeec-ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 381 LYQKHI-ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 381 l~~~~~-~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
.+.-.- ..-...|++=-.|... ....+++++ |.-..+|..+ ++++-
T Consensus 618 ~lsd~Kk~~lGt~P~~Lr~f~sk-----~~t~vfa~s-drP~viY~~n-~kLv~ 664 (1096)
T KOG1897|consen 618 QLSDRKKVTLGTQPISLRTFSSK-----SRTAVFALS-DRPTVIYSSN-GKLVY 664 (1096)
T ss_pred eEccccccccCCCCcEEEEEeeC-----CceEEEEeC-CCCEEEEecC-CcEEE
Confidence 322111 0112234444456553 345555554 5555555544 55543
No 393
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.80 E-value=19 Score=42.88 Aligned_cols=116 Identities=13% Similarity=0.126 Sum_probs=70.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCCc--ee-eeeeccc-c---cc-cccc-cCCCCeEEEEEe--CCCCEEEEEeCCCcEEEE
Q 003360 242 VKNLFITGHSDGAINFWDVSCPL--FL-LILSLKQ-Q---SE-KDFS-LSGIPLTALYYD--GTSRVLVSGDQSGMVRIF 310 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~--~~-~i~~l~~-~---~~-~~~~-~h~~~V~~l~fs--p~~~~Lasgs~dg~V~iw 310 (826)
..++|+.|..||.|.+|....-. .. .....+. . .. ..+. --+.+++.|+++ ...+++|+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 44689999999999999751100 00 0000000 0 00 0011 112689999999 889999999999999998
Q ss_pred EeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-----C-EEEEEecCCeEEEEec
Q 003360 311 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-----Q-HLAVGSDQGYVYLLDT 375 (826)
Q Consensus 311 d~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-----~-~lasGs~dG~V~vwD~ 375 (826)
-+...... ..+ .....+...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 193 af~l~~~r--------------~~~----~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDER--------------FYH----VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccc--------------ccc----ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 87642110 000 1111234457888885533 2 7888999999999888
No 394
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=85.76 E-value=2.2 Score=30.95 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=26.5
Q ss_pred CCeEEEEEeCCCC---EEEEEeCCCcEEEEEeCCC
Q 003360 284 IPLTALYYDGTSR---VLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 284 ~~V~~l~fsp~~~---~Lasgs~dg~V~iwd~~~~ 315 (826)
++|.++.|+|+.. +|+-+-.-|.|.|+|++.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3789999998654 7888878899999999853
No 395
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=85.16 E-value=3.1 Score=46.55 Aligned_cols=97 Identities=19% Similarity=0.254 Sum_probs=64.4
Q ss_pred EEEEccCCCEEEEEecCCeEEE---Eec-CCC------eeEEeeecccCCCCCeeEEEEeecccCC-----CCCcEEEEE
Q 003360 351 SLNMNRNSQHLAVGSDQGYVYL---LDT-EGP------TVLYQKHIASDISSGIVSLQFETCSLQG-----FEKNFLVIA 415 (826)
Q Consensus 351 ~l~~s~~g~~lasGs~dG~V~v---wD~-~~~------~~l~~~~~~~~~~~~V~sl~f~~~~~~~-----~d~~~l~sg 415 (826)
.++.+|++..||.+..+..|.+ |+. +.+ .+.....+.......|+++.+.|..... .|..++++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999988877665 533 111 1222222222333689999999974433 568899999
Q ss_pred ECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEe
Q 003360 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQIL 451 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l 451 (826)
.++|.|++|... |.++.....| +..++.+.+.
T Consensus 86 ~ssG~vrfyte~-G~LL~~Q~~h---~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GVLLLSQLLH---EEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc-chHHHHHhcC---ccceEEEEec
Confidence 999999999974 8776554344 3445555443
No 396
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.09 E-value=11 Score=46.24 Aligned_cols=139 Identities=9% Similarity=0.008 Sum_probs=77.2
Q ss_pred EEeccCc-cEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEe-c-CCcEEEeccCCCce
Q 003360 149 LLLGKSG-HFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSS-A-DEDYSLLAKSVPPL 225 (826)
Q Consensus 149 iv~~~~G-~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~-~-d~~i~~w~~~~~~~ 225 (826)
++.+.+| .|+.||...+....+... + +-.+.......-..+.++.|+|.-..-.+. . |..|++........
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~-~-----pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~ 190 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETT-V-----PLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ 190 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhc-c-----ccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh
Confidence 3344444 567899988755442221 0 111111112222345677788766554443 3 77777663322111
Q ss_pred eecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE
Q 003360 226 LDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300 (826)
Q Consensus 226 ~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las 300 (826)
.....+....++| |+|.|..++.|-..|++.=|-.+.... ..+... .+. ..+.|.+|+|-....+|++
T Consensus 191 ~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik---~~ip~P---p~~-e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 191 NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK---SEIPEP---PVE-ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee---ecccCC---CcC-CCcceeEEEEecceeEEEE
Confidence 1111234455566 999999999999999999888765542 112211 111 1378999999877666554
No 397
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=84.50 E-value=14 Score=44.00 Aligned_cols=136 Identities=17% Similarity=0.108 Sum_probs=78.8
Q ss_pred CeEEEEEeC--CCCEEEEEeCCCcEEEEEeCCCCCcccc---ceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEc--cC
Q 003360 285 PLTALYYDG--TSRVLVSGDQSGMVRIFKLKYEPHAIEN---SFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN--RN 357 (826)
Q Consensus 285 ~V~~l~fsp--~~~~Lasgs~dg~V~iwd~~~~~~~~~~---~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s--~~ 357 (826)
.|+.|.... ....|+.+..||.|.+|..+.--..... ..... .++ ..+...-.......+.+|+++ ..
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~-~~r----~~i~P~f~~~v~~SaWGLdIh~~~~ 176 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG-FSR----LKIKPFFHLRVGASAWGLDIHDYKK 176 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc-ccc----ccCCCCeEeecCCceeEEEEEecCc
Confidence 455665543 3468999999999999987522000000 00000 000 000001112235578999998 78
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCC-cEEEEEECCCcEEEEEC
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEK-NFLVIATKDSSVLVLDS 426 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~-~~l~sgs~Dg~V~iwd~ 426 (826)
.+++|+++....|.||-.....--+.......+...|-+|.|.+..... +| ..|++++-.|.+.+|+.
T Consensus 177 ~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~-~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 177 SRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDP-NGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCC-ccceEEEEEeccCcEEEEEE
Confidence 8899999999988888664421110011112355678899999864332 13 37778888998888776
No 398
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=84.02 E-value=6 Score=44.74 Aligned_cols=104 Identities=14% Similarity=0.039 Sum_probs=59.2
Q ss_pred EEEEeeCCCeEEEec--CCcEEEe--ccCCCceeecccccCCccee---eCCCCCEEEEE-ECCCcEEEEeC--CCCcee
Q 003360 197 AMKLITGNSFILSSA--DEDYSLL--AKSVPPLLDFETKLKDGSQS---HSKVKNLFITG-HSDGAINFWDV--SCPLFL 266 (826)
Q Consensus 197 ~~~fs~~~~~l~~~~--d~~i~~w--~~~~~~~~~~~~~h~g~V~~---~s~~~~~l~Tg-s~DGtVriWD~--s~~~~~ 266 (826)
.-+|+|||+.++.+. |+...+| +........ ..+..++.. |+|+|+.|+-. ...|.-+||-. .+....
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~--Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR--LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee--cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 346999999998866 7777777 333322222 223334433 99999977655 44566566554 443311
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-Cc--EEEEEeC
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-GM--VRIFKLK 313 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-g~--V~iwd~~ 313 (826)
. + ......=..-.|+|+++.++..+.. |. |.++++.
T Consensus 320 r---i--------T~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 320 R---L--------TFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred E---e--------eccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 1 1 1122122266789999988877653 44 4444443
No 399
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.95 E-value=21 Score=44.79 Aligned_cols=156 Identities=12% Similarity=0.190 Sum_probs=84.1
Q ss_pred eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEE--------EeCCCCEEEEEeCCCcEEE
Q 003360 239 HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALY--------YDGTSRVLVSGDQSGMVRI 309 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~--------fsp~~~~Lasgs~dg~V~i 309 (826)
|.+-++.-+ +-|..+.+|+. ++..... ++.-...|..|. |-|.=++|.+-..--.|.|
T Consensus 87 FpeI~RaWi--TiDn~L~lWny~~~~e~~~-----------~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~i 153 (1311)
T KOG1900|consen 87 FPEIGRAWI--TIDNNLFLWNYESDNELAE-----------YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVI 153 (1311)
T ss_pred chhhcceEE--EeCCeEEEEEcCCCCcccc-----------ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEE
Confidence 444455444 45788999999 5444211 111112333333 3333345555555556778
Q ss_pred EEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEec--CCC---------
Q 003360 310 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT--EGP--------- 378 (826)
Q Consensus 310 wd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~--~~~--------- 378 (826)
+-+......+...+.. ++ .+.......|+|+....+|+ +..|+.||. ||.+ ...
T Consensus 154 lgV~~~~~~~~~~~f~-----~~-------~~i~~dg~~V~~I~~t~nGR-IF~~G~dg~--lyEl~Yq~~~gWf~~rc~ 218 (1311)
T KOG1900|consen 154 LGVSFDEFTGELSIFN-----TS-------FKISVDGVSVNCITYTENGR-IFFAGRDGN--LYELVYQAEDGWFGSRCR 218 (1311)
T ss_pred EEEEeccccCcccccc-----cc-------eeeecCCceEEEEEeccCCc-EEEeecCCC--EEEEEEeccCchhhcccc
Confidence 7765443322111110 00 11222234589999888886 555566664 4443 111
Q ss_pred eeEEe-----------eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 379 TVLYQ-----------KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 379 ~~l~~-----------~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
++-.+ ......+.++|..+.... +-+.+.+-+.-|+|.+||+..
T Consensus 219 Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~------SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 219 KICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN------SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccCchhHHHHhhhhhhcCCCCCCCcceeeEecc------ccceeeeeccCceEEEEEccC
Confidence 00000 011124566888888877 378899999999999999985
No 400
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.38 E-value=1.2e+02 Score=36.96 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=55.4
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCC-CC---C-ccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKY-EP---H-AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN- 357 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~-~~---~-~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~- 357 (826)
..|..|.++|+|.+||..+..|.+.+.=-+. +. . .....+.+-+..-+.. +-.......|..+.|+|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~------~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDER------FFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechh------hccCCCCceEEEEEEcCCC
Confidence 5789999999999999998887555443221 10 1 0111111111110000 001112345999999986
Q ss_pred --CCEEEEEecCCeEEEEecCCCe
Q 003360 358 --SQHLAVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 358 --g~~lasGs~dG~V~vwD~~~~~ 379 (826)
+.+|++=+.|+++|+||+....
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCCCC
Confidence 4789999999999999997653
No 401
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.11 E-value=19 Score=45.09 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=49.9
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEecCCc-EEE-eccCCCceee---------------------cccccCCccee--eC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSADED-YSL-LAKSVPPLLD---------------------FETKLKDGSQS--HS 240 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~-i~~-w~~~~~~~~~---------------------~~~~h~g~V~~--~s 240 (826)
++++.....|+|+.+..+|+.+++|-|+. +-+ |.....|+.. +...+..+|.. ..
T Consensus 172 ~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 44555567899999999999999988553 222 2222223222 11123444544 55
Q ss_pred CCCCEEEEEECCCcEEEEeCCC
Q 003360 241 KVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
..+.++.+=+.-|+|++||+..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 6677889999999999999943
No 402
>PHA02713 hypothetical protein; Provisional
Probab=82.48 E-value=43 Score=39.51 Aligned_cols=68 Identities=9% Similarity=0.104 Sum_probs=41.6
Q ss_pred eCCCCCEEEEEECCC------cEEEEeCCC-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC--cEEE
Q 003360 239 HSKVKNLFITGHSDG------AINFWDVSC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG--MVRI 309 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DG------tVriWD~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg--~V~i 309 (826)
..-++.+++.|+.++ +|..||... .....+..+.. .......+.+ ++.+.++|+.+| .|..
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--------~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--------RLSALHTILH--DNTIMMLHCYESYMLQDT 529 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc--------ccccceeEEE--CCEEEEEeeecceeehhh
Confidence 344577888887652 467888865 56544333331 1122223322 678889999998 7778
Q ss_pred EEeCCCC
Q 003360 310 FKLKYEP 316 (826)
Q Consensus 310 wd~~~~~ 316 (826)
||..+++
T Consensus 530 yd~~~~~ 536 (557)
T PHA02713 530 FNVYTYE 536 (557)
T ss_pred cCccccc
Confidence 8887653
No 403
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=82.17 E-value=1.3e+02 Score=36.82 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=34.5
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
..++.|.+++...-+.+|+....||+|.++|..+.+.+...
T Consensus 257 ~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~ 297 (753)
T PF11635_consen 257 TLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNET 297 (753)
T ss_pred ccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccc
Confidence 34677999999988889999999999999999887666433
No 404
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=82.03 E-value=1.2e+02 Score=36.10 Aligned_cols=160 Identities=13% Similarity=0.198 Sum_probs=83.3
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccccccccc
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMN 470 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~ 470 (826)
...|..+.|.. ++..+++.-.+|.|.+||...+..-..-.........+..-.++.
T Consensus 129 ~~kvv~Ik~~~------~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~------------------ 184 (670)
T PF10395_consen 129 DDKVVGIKFSS------DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVN------------------ 184 (670)
T ss_pred ccceEEEEEec------CCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhc------------------
Confidence 45788899986 488999999999999999943322111001111111111101111
Q ss_pred CCCCCCCCC---CCCCEEEEee-c---CcEEEEeccccccccceeeeeee---cCCCCceeeEeeeeCCceEEEEEEeec
Q 003360 471 KGSPKENAV---PKQWFVLLCS-E---KAACAYSLSHAVQGVKKVLYKKK---FHSSSCCWASTFYSGSDVGLMLLFTSG 540 (826)
Q Consensus 471 ~~~~~~~~~---~~~~~vv~~s-e---~~irv~sl~~~~~g~~k~~~k~~---~~~~~c~~~~~~~~~~~~~lv~~~~~G 540 (826)
.+. ..+.++++|. + -..|+|.+.. ....-..++..- +....|.++. ..|.+.-+.++
T Consensus 185 ------~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~-~~~~~~El~s~~~e~~~~~~s~f~Y------~~G~LY~l~~~ 251 (670)
T PF10395_consen 185 ------DFELENGKDLLLTVSQLSNSKLSYKLISLSN-ESSSIFELSSTILENFGLEDSKFCY------QFGKLYQLSKK 251 (670)
T ss_pred ------ccccccCCceEEEEEEcCCCcEEEEEEEecc-CCcceEEeehheeccCCcccceEEE------eCCEEEEEeCC
Confidence 111 2234555555 3 2688888821 001111222111 1112233321 24444445899
Q ss_pred eEEEeccCCccccccccccc---------eeecCCCCCCCcccceeccCCCcEEEEcCCee
Q 003360 541 KFEIRSLPELSLLKETSIRG---------FVYLTPKPNSLSNTLMCSSWDGELIMVNGNQE 592 (826)
Q Consensus 541 ~I~i~slP~L~~l~~~sl~~---------~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e 592 (826)
.|.+++||.++.....++.. +++.||. ...+-.+.+..|.+++--.|
T Consensus 252 ~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s-----~nRvLLs~~nkIyLld~~~~ 307 (670)
T PF10395_consen 252 TISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS-----PNRVLLSVNNKIYLLDLKFE 307 (670)
T ss_pred EEEEEEcCCceEEEEEEechhhccccccceEeecCC-----CCeEEEEcCCEEEEEeehhh
Confidence 99999999999888876662 2444321 12233455667777776555
No 405
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=81.81 E-value=1.5 Score=51.91 Aligned_cols=156 Identities=10% Similarity=0.059 Sum_probs=82.8
Q ss_pred CcEEEEeC---CCCceeeeeecccccccccccCCCCeEEEEEeC---CCCEEEEEeCCCcEEEEEeCCCCCc----cccc
Q 003360 253 GAINFWDV---SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG---TSRVLVSGDQSGMVRIFKLKYEPHA----IENS 322 (826)
Q Consensus 253 GtVriWD~---s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp---~~~~Lasgs~dg~V~iwd~~~~~~~----~~~~ 322 (826)
|..-|||+ .+.. ++ .+. +......+..+.-|.||| +.-+++.+..+|+|++..+.+.... |...
T Consensus 153 g~lfVy~vd~l~G~i-q~--~l~---v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~ 226 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEI-QP--QLE---VTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQR 226 (1283)
T ss_pred hhhheeehHhhcccc-cc--ceE---EeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCC
Confidence 67889998 3332 11 111 111123345667777776 5678888999999999888754210 1000
Q ss_pred eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC-----CCeeEEeeecccCCC-CCeeE
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE-----GPTVLYQKHIASDIS-SGIVS 396 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~-----~~~~l~~~~~~~~~~-~~V~s 396 (826)
...+.+-. .+.+.--..||||+.+|.++.||.++.|.+. ...|++... .|. .+-.|
T Consensus 227 ~~d~a~~~---------------~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk---phd~~p~vC 288 (1283)
T KOG1916|consen 227 VTDMAFFA---------------EGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK---PHDKHPRVC 288 (1283)
T ss_pred cccHHHHh---------------hchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC---CCCCCCcee
Confidence 00000000 1111112279999999999999999888753 233443332 233 23333
Q ss_pred EEEeecccCCCC---CcEEEEEEC-CCcEEEEECCCCceE
Q 003360 397 LQFETCSLQGFE---KNFLVIATK-DSSVLVLDSDNGNML 432 (826)
Q Consensus 397 l~f~~~~~~~~d---~~~l~sgs~-Dg~V~iwd~~tg~~i 432 (826)
.-|........+ -.++++++. +..+++|.....+|+
T Consensus 289 ~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 289 WLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 223332111111 234555554 346899998877766
No 406
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=81.02 E-value=93 Score=34.21 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=26.7
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCc
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 46 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~ 46 (826)
...+....| +|+|+.||-.+ ++.|.+++..++
T Consensus 42 ~~~~~~~~~-sP~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 42 PPKLQDAKW-SPDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp ETTBSEEEE--SSSTEEEEEE-TTEEEEESSTTS
T ss_pred cccccccee-ecCCCeeEEEe-cCceEEEECCCC
Confidence 457888999 78999999995 689999998876
No 407
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=81.01 E-value=98 Score=34.50 Aligned_cols=203 Identities=11% Similarity=0.158 Sum_probs=118.8
Q ss_pred EEEEEeeCCCeEEEec--CCcEEEeccCCCceeec-ccccCCccee-eCCCCCEEEEEEC---CCcEEEEeCCCCceeee
Q 003360 196 TAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDF-ETKLKDGSQS-HSKVKNLFITGHS---DGAINFWDVSCPLFLLI 268 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~-~~~h~g~V~~-~s~~~~~l~Tgs~---DGtVriWD~s~~~~~~i 268 (826)
..+++++.+..+.... +..+.+.+......... ..+. ....- ++++++.+..+.. +++|.+.|...... +
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~--~ 153 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV--T 153 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE--E
Confidence 4566777777555433 57777776443222222 1111 11111 8888865555544 67787777743332 1
Q ss_pred eecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC
Q 003360 269 LSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING 347 (826)
Q Consensus 269 ~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~ 347 (826)
..+. .-..+ ..+++.|++..+.+.. .++.|.++|....... . .+ ... ......
T Consensus 154 ~~~~--------vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~------~--~~-~~~--------~~~~~~ 207 (381)
T COG3391 154 ATIP--------VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV------R--GS-VGS--------LVGVGT 207 (381)
T ss_pred EEEe--------cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee------c--cc-ccc--------ccccCC
Confidence 2221 11123 7899999999777665 6789999996643221 0 00 000 001122
Q ss_pred CeEEEEEccCCCEEEEEecC---CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC-CcEEE
Q 003360 348 SIISLNMNRNSQHLAVGSDQ---GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD-SSVLV 423 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~d---G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D-g~V~i 423 (826)
.-..+.++++|.++.+.... +.+.+.|..++........ .+.. ....+.+.| ++..+.+.... +.+.+
T Consensus 208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~-~~~~-~~~~v~~~p------~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP-VGSG-APRGVAVDP------AGKAAYVANSQGGTVSV 279 (381)
T ss_pred CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc-cccC-CCCceeECC------CCCEEEEEecCCCeEEE
Confidence 24567899999876665544 5999999998887733111 1222 344567777 58888887554 88999
Q ss_pred EECCCCceEEee
Q 003360 424 LDSDNGNMLSTN 435 (826)
Q Consensus 424 wd~~tg~~i~~~ 435 (826)
.|..+.......
T Consensus 280 id~~~~~v~~~~ 291 (381)
T COG3391 280 IDGATDRVVKTG 291 (381)
T ss_pred EeCCCCceeeee
Confidence 999988777664
No 408
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.91 E-value=25 Score=39.73 Aligned_cols=120 Identities=12% Similarity=0.146 Sum_probs=65.8
Q ss_pred eccCCeEEEEEccCCC-------EEEEEecCCeEEEEecCCCee-EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 344 KINGSIISLNMNRNSQ-------HLAVGSDQGYVYLLDTEGPTV-LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~-------~lasGs~dG~V~vwD~~~~~~-l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
.....|+-+.+.|+.. .-++|-.|..|.=||.|-... . ..+... ....+.-.|+..... .+.++++|
T Consensus 373 k~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k--l~~~q~-kqy~~k~nFsc~aTT--~sG~Ivvg 447 (644)
T KOG2395|consen 373 KFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK--LAVVQS-KQYSTKNNFSCFATT--ESGYIVVG 447 (644)
T ss_pred eccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce--eeeeec-cccccccccceeeec--CCceEEEe
Confidence 3344466666666542 134577788899999873222 1 111111 112222333332111 47899999
Q ss_pred ECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEE
Q 003360 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACA 495 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv 495 (826)
|.+|.|++||. .|..-.+. -|.....+.-+. .+.++..|++.++..+-|
T Consensus 448 S~~GdIRLYdr-i~~~AKTA--lPgLG~~I~hVd----------------------------vtadGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 448 SLKGDIRLYDR-IGRRAKTA--LPGLGDAIKHVD----------------------------VTADGKWILATCKTYLLL 496 (644)
T ss_pred ecCCcEEeehh-hhhhhhhc--ccccCCceeeEE----------------------------eeccCcEEEEecccEEEE
Confidence 99999999997 46544431 122211111111 233456888888888888
Q ss_pred Eecc
Q 003360 496 YSLS 499 (826)
Q Consensus 496 ~sl~ 499 (826)
.++.
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 8775
No 409
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.48 E-value=7.3 Score=39.75 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=49.0
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee-e---ccc-------CCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK-H---IAS-------DISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~-~---~~~-------~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
..++..+. ..+.+|++-+.+|.+++||+.+.++++.. . +.. .....|+++.... +|.-+++
T Consensus 12 gs~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~------~G~PiV~ 83 (219)
T PF07569_consen 12 GSPVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS------NGVPIVT 83 (219)
T ss_pred CCceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC------CCCEEEE
Confidence 44555554 45678999999999999999999887543 1 111 2334566565554 3544544
Q ss_pred EECCCcEEEEECCCCc
Q 003360 415 ATKDSSVLVLDSDNGN 430 (826)
Q Consensus 415 gs~Dg~V~iwd~~tg~ 430 (826)
- ++|..+.|+..-+.
T Consensus 84 l-sng~~y~y~~~L~~ 98 (219)
T PF07569_consen 84 L-SNGDSYSYSPDLGC 98 (219)
T ss_pred E-eCCCEEEeccccce
Confidence 4 45778888877544
No 410
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=79.85 E-value=1.2e+02 Score=34.96 Aligned_cols=62 Identities=11% Similarity=0.362 Sum_probs=41.4
Q ss_pred EEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE------------------EECCCcE
Q 003360 360 HLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI------------------ATKDSSV 421 (826)
Q Consensus 360 ~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s------------------gs~Dg~V 421 (826)
.+++++.+|.+..+|.++++.++....... .+... ...+++ ...+|.|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~------~~~~~--------~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQ------PMAYD--------PGLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeecc------ccccC--------CceEEEccccccccCcccccCCCCCCCceEE
Confidence 578899999999999999999976543200 01111 122222 2346789
Q ss_pred EEEECCCCceEEee
Q 003360 422 LVLDSDNGNMLSTN 435 (826)
Q Consensus 422 ~iwd~~tg~~i~~~ 435 (826)
..+|..+|+.+-+.
T Consensus 369 ~AlD~~tG~~~W~~ 382 (488)
T cd00216 369 AALDPKTGKVVWEK 382 (488)
T ss_pred EEEeCCCCcEeeEe
Confidence 99999999887664
No 411
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=79.36 E-value=92 Score=33.18 Aligned_cols=181 Identities=17% Similarity=0.192 Sum_probs=90.7
Q ss_pred EEEEEECCCcEEEEeC-CCCce--eeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEe-CCCcEEEEEeCCCCCc
Q 003360 245 LFITGHSDGAINFWDV-SCPLF--LLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGD-QSGMVRIFKLKYEPHA 318 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~-s~~~~--~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs-~dg~V~iwd~~~~~~~ 318 (826)
.++.+++||+|.=|.. -.... .....+... ....--.-+++... +.+|..+. ..++|.+||-.-....
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s------~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS------QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccC------CCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence 4788899999999996 22220 000111110 01112234555533 44555443 4688888875533211
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEE
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 398 (826)
....+..-....+..+.. ++.....-.|+-..-.++...=+.|-.-|.|-++|+. +..+.++. ..+.-...+.|+
T Consensus 176 ~~g~F~DP~iPagyAPFn---Iqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~a-s~g~LNaPWG~a 250 (336)
T TIGR03118 176 LPGSFIDPALPAGYAPFN---VQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVA-SSGRLNAPWGLA 250 (336)
T ss_pred CCCCccCCCCCCCCCCcc---eEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEec-cCCcccCCceee
Confidence 101110000000111111 1111111123333334444444556667899999994 55553332 123344556676
Q ss_pred EeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 399 FETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
..|...-...+.+|+----||+|.++|..+|+++..+.
T Consensus 251 ~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 251 IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred eChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 66643333346666555579999999999999997753
No 412
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.32 E-value=9 Score=37.48 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=28.8
Q ss_pred CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
.|.+++|+|.-+......+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 788999999644443467888999999999999773
No 413
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=78.74 E-value=88 Score=32.58 Aligned_cols=174 Identities=15% Similarity=0.220 Sum_probs=91.8
Q ss_pred CCccee--eCCCCC-EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003360 233 KDGSQS--HSKVKN-LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRI 309 (826)
Q Consensus 233 ~g~V~~--~s~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~i 309 (826)
...+.. |.|+.+ ++++....+.|.-.+..+..+ ..+.. .+ ..-.-.|++..++.++++.-.++.+.+
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vl---r~i~l------~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVL---RRIPL------DG-FGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EE---EEEE-------SS--SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEE---EEEeC------CC-CCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 334555 888655 666777778887777766542 22321 11 135667888877777776666899999
Q ss_pred EEeCCCCCccccceEEEeecCCCCeEEEEEEEEe---eccCCeEEEEEccCCCEEEEEecCCeEEEEecCC---CeeEEe
Q 003360 310 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM---KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG---PTVLYQ 383 (826)
Q Consensus 310 wd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~---~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~---~~~l~~ 383 (826)
+++....... . ...+..+... ..+..+-.|+|++.++.|.++-+..-..|+.+.. ...+..
T Consensus 91 ~~~~~~~~~~--~-----------~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 91 FTIDDDTTSL--D-----------RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp EEE----TT---------------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE
T ss_pred EEEecccccc--c-----------hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee
Confidence 9985432110 0 0000011111 1245589999999988888888776667777654 222211
Q ss_pred ee---cc--cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 384 KH---IA--SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 384 ~~---~~--~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.. +. .....-+.++.|.|. .+.+++.......|..+| ..|+.+..+
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~-----t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPR-----TGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETT-----TTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred ccccccccccceeccccceEEcCC-----CCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 11 10 112334678888885 356666666777889999 448877664
No 414
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=78.73 E-value=90 Score=32.69 Aligned_cols=155 Identities=11% Similarity=0.125 Sum_probs=83.6
Q ss_pred eCCCCCEEEEEECCC--cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 239 HSKVKNLFITGHSDG--AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DG--tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
|..++.++-+.+.-| .|+.+|..+........+... .-=-.+... +.++..-...++...+||..+-+
T Consensus 52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~---------~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR---------YFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----------EEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc---------ccceeEEEE-CCEEEEEEecCCeEEEEccccce
Confidence 446677777777766 799999944442222223211 001122222 23344445577888888876321
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCC---
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSG--- 393 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~--- 393 (826)
. +......+.=..|+ .++..|+.......++++|..+.+...+.... ....+
T Consensus 122 ~----------------------~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~ 176 (264)
T PF05096_consen 122 K----------------------IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSN 176 (264)
T ss_dssp E----------------------EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---
T ss_pred E----------------------EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECCEECCC
Confidence 1 22222333444555 46667777777788999999888777554443 22233
Q ss_pred eeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 394 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+.-+.|.. +...+=.=....|..+|..+|+.+..+
T Consensus 177 LNELE~i~-------G~IyANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 177 LNELEYIN-------GKIYANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EEEEEEET-------TEEEEEETTSSEEEEEETTT-BEEEEE
T ss_pred cEeEEEEc-------CEEEEEeCCCCeEEEEeCCCCeEEEEE
Confidence 34455653 444444444567899999999988765
No 415
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=78.06 E-value=1e+02 Score=36.43 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=39.6
Q ss_pred eCCCCCEEEEEECCC------cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc-----E
Q 003360 239 HSKVKNLFITGHSDG------AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM-----V 307 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DG------tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~-----V 307 (826)
..-+|.++++|+.|| +|..||........+..+... ..... ++ .-++.+.++|+.||. |
T Consensus 424 ~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~--------R~~~g-~a-~~~~~iYvvGG~~~~~~~~~V 493 (571)
T KOG4441|consen 424 AVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR--------RSGFG-VA-VLNGKIYVVGGFDGTSALSSV 493 (571)
T ss_pred EEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc--------cccce-EE-EECCEEEEECCccCCCccceE
Confidence 456788999998664 567888866664332222211 11111 22 225678888888873 6
Q ss_pred EEEEeCCC
Q 003360 308 RIFKLKYE 315 (826)
Q Consensus 308 ~iwd~~~~ 315 (826)
..||..++
T Consensus 494 E~ydp~~~ 501 (571)
T KOG4441|consen 494 ERYDPETN 501 (571)
T ss_pred EEEcCCCC
Confidence 66777654
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.05 E-value=98 Score=32.76 Aligned_cols=174 Identities=11% Similarity=0.112 Sum_probs=100.7
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEe-ccCCCceeecccccCCccee-----eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLL-AKSVPPLLDFETKLKDGSQS-----HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w-~~~~~~~~~~~~~h~g~V~~-----~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
+....|+.+.|+|+.+.|++.. ...-.+| ......+..+ +..+ +.. +-.++++.++--.++.+.+..+..
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti--PL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI--PLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe--cccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 3445599999999999999877 4444455 3333222222 2222 222 566677777777888888877732
Q ss_pred C-ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 263 P-LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 263 ~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
. ........+.+ ...........-.++|.|..+.|.++-+-.-+.||.+....... ..+ .+.+-. ..
T Consensus 160 ~t~~~~~~~~~i~-L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l--~~~---~~~~~~------~~ 227 (316)
T COG3204 160 DTTVISAKVQKIP-LGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL--SVH---ASLDPT------AD 227 (316)
T ss_pred CccEEeccceEEe-ccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc--ccc---cccCcc------cc
Confidence 2 21111111100 11111113566789999999999999999999999987443211 000 000000 00
Q ss_pred EeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCC
Q 003360 342 VMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGP 378 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~ 378 (826)
....-..|.++.|++ .+.+++-+.+++.+.-.|....
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 000123578888885 4567777888888888888554
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=78.03 E-value=74 Score=36.80 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=48.7
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec
Q 003360 287 TALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD 366 (826)
Q Consensus 287 ~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~ 366 (826)
...-|+|....|++=.....-.+++++... ... ..-....+-|.|.+|..||++|+++-.
T Consensus 116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~----------------srV----kaDi~~~G~IhCACWT~DG~RLVVAvG 175 (671)
T PF15390_consen 116 QGCVWHPKKAILTVLTARDVSVLPSVHCDS----------------SRV----KADIKTSGLIHCACWTKDGQRLVVAVG 175 (671)
T ss_pred CcccccCCCceEEEEecCceeEeeeeeeCC----------------ceE----EEeccCCceEEEEEecCcCCEEEEEeC
Confidence 345799999998887666555677776332 222 112244677999999999998776543
Q ss_pred C-CeEEEEecCCCe
Q 003360 367 Q-GYVYLLDTEGPT 379 (826)
Q Consensus 367 d-G~V~vwD~~~~~ 379 (826)
. =.-++||-.+.+
T Consensus 176 SsLHSyiWd~~qKt 189 (671)
T PF15390_consen 176 SSLHSYIWDSAQKT 189 (671)
T ss_pred CeEEEEEecCchhh
Confidence 3 235799976654
No 418
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=77.53 E-value=88 Score=31.94 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=65.4
Q ss_pred EEEEEeCCCCEEEE-EeCCCcEEEEE--eCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 287 TALYYDGTSRVLVS-GDQSGMVRIFK--LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 287 ~~l~fsp~~~~Las-gs~dg~V~iwd--~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
+.++|+.+...+.. -+.+-+|.-|| +.++.......+..+..+.... .----.+++..+|.+.++
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e------------~~~PDGm~ID~eG~L~Va 228 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE------------SLEPDGMTIDTEGNLYVA 228 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC------------CCCCCcceEccCCcEEEE
Confidence 57888877766554 45667787888 4444433333333332221110 001233455668988888
Q ss_pred EecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 364 GSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 364 Gs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
....|+|..+|..+++++..+.+. ...|++++|.-
T Consensus 229 ~~ng~~V~~~dp~tGK~L~eiklP---t~qitsccFgG 263 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTTGKILLEIKLP---TPQITSCCFGG 263 (310)
T ss_pred EecCcEEEEECCCCCcEEEEEEcC---CCceEEEEecC
Confidence 899999999999999999877764 55899999975
No 419
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.34 E-value=40 Score=38.13 Aligned_cols=95 Identities=11% Similarity=0.052 Sum_probs=59.5
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEE---eCCCCCcc--ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFK---LKYEPHAI--ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS 358 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd---~~~~~~~~--~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 358 (826)
..|..|..++.|..++-.+-+|.+.++= +..+.... ...+.+-+++-+... -+....-.+.-.+|+|+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~------ftss~~ltl~Qa~WHP~S 177 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF------FTSSTSLTLKQAAWHPSS 177 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccccee------eccCCceeeeeccccCCc
Confidence 5788899999999999999999887765 32221110 011222222211100 000112236778899875
Q ss_pred ---CEEEEEecCCeEEEEecCCCeeEEee
Q 003360 359 ---QHLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 359 ---~~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
.+|.+=+.|.+|||||+...+-+|..
T Consensus 178 ~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 178 ILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred cCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 57888889999999999888777544
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=76.91 E-value=4.9 Score=47.84 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=39.9
Q ss_pred EEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee-------------eCCCCCEEEEEECCCcEEEEeC
Q 003360 198 MKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS-------------HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 198 ~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~-------------~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
+-|.++.-++..+. ++.+++.+........+ .+|..++.. .+|||..++++..||.|++|.+
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~-rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRALRSLF-RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHHHHHH-HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 33444554554555 66776654332222222 346655533 7999999999999999999998
No 421
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=76.79 E-value=73 Score=32.14 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=33.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe
Q 003360 296 RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS 365 (826)
Q Consensus 296 ~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs 365 (826)
..|.++...+.|.+|++....+.. +-....-+.|..|.++..|.+|++==
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~--------------------~~~F~Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPL--------------------LCTFSTVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCce--------------------eEEEcchhheeEEEeccccceEEEEE
Confidence 445444666789999998443321 22223347789999999999988753
No 422
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=76.55 E-value=1e+02 Score=32.16 Aligned_cols=133 Identities=20% Similarity=0.222 Sum_probs=74.9
Q ss_pred eCCCCCEEEEEE-CC--CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 239 HSKVKNLFITGH-SD--GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 ~s~~~~~l~Tgs-~D--GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
.+++++.++.-. .+ ..+.++...+... . + .....++.-+|++++...++...+..++++.....
T Consensus 31 vS~dg~~~A~v~~~~~~~~L~~~~~~~~~~-~---~---------~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 31 VSPDGSRVAAVSEGDGGRSLYVGPAGGPVR-P---V---------LTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred ECCCCCeEEEEEEcCCCCEEEEEcCCCcce-e---e---------ccCCccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence 889998666554 33 3444554433221 1 1 02236778899999888887777777777753211
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe---cCCeEEEEecC---CC--eeE-Eeeec
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS---DQGYVYLLDTE---GP--TVL-YQKHI 386 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs---~dG~V~vwD~~---~~--~~l-~~~~~ 386 (826)
. ...... +......+.|+++.+||||.++|.-. .++.|.|=-+. .+ ..+ .....
T Consensus 98 g--------------~~~~~~---v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~ 160 (253)
T PF10647_consen 98 G--------------TGEPVE---VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV 160 (253)
T ss_pred C--------------cceeEE---ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe
Confidence 0 001111 11111123899999999999998776 34666665432 22 111 11111
Q ss_pred ccCCCCCeeEEEEee
Q 003360 387 ASDISSGIVSLQFET 401 (826)
Q Consensus 387 ~~~~~~~V~sl~f~~ 401 (826)
.......++.+.|..
T Consensus 161 ~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 161 APPLLSDVTDVAWSD 175 (253)
T ss_pred cccccCcceeeeecC
Confidence 123346788999988
No 423
>PHA02713 hypothetical protein; Provisional
Probab=75.85 E-value=74 Score=37.52 Aligned_cols=57 Identities=7% Similarity=0.132 Sum_probs=31.8
Q ss_pred eCCCCCEEEEEECCC-----cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC
Q 003360 239 HSKVKNLFITGHSDG-----AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG 305 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DG-----tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg 305 (826)
..-++.+++.|+.+| +|..||........+..+... ......+. -++.+.+.|+.++
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~--------r~~~~~~~--~~g~IYviGG~~~ 409 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA--------LSSYGMCV--LDQYIYIIGGRTE 409 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc--------cccccEEE--ECCEEEEEeCCCc
Confidence 344678889998765 478899866664332222211 11111222 2577778887664
No 424
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=75.50 E-value=27 Score=40.85 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=62.6
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
..++++.-+|.++.++.+..||.+++|++..... -+......|-..+.|...| |++
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q----------------------ski~~~~~p~~nlv~tnhg--l~~ 70 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ----------------------SKICEEAKPKENLVFTNHG--LVT 70 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccch----------------------hhhhhhcCCccceeeeccc--eEE
Confidence 4678888899999999999999999999973321 0111112334455666666 566
Q ss_pred EecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 364 GSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 364 Gs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
...|..+.-|.- .|-+-.++...........++...|. -.=++|+--|-|.-+|.
T Consensus 71 ~tsdrr~la~~~-dgvvqqqfdyndqsekefss~~cdpt-------aqnvvgtlcggv~q~dc 125 (1636)
T KOG3616|consen 71 ATSDRRALAWKE-DGVVQQQFDYNDQSEKEFSSILCDPT-------AQNVVGTLCGGVEQFDC 125 (1636)
T ss_pred Eeccchhheeec-cCcchhhccccchhhhhccceecCch-------hhhhhhhhccceeeehH
Confidence 666776666653 33333233332233333334444442 12234555555555554
No 425
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=71.35 E-value=17 Score=42.80 Aligned_cols=81 Identities=19% Similarity=0.271 Sum_probs=46.5
Q ss_pred cCCCEEEEEecCCeEEEEecCC----CeeEEeeecc-------------------cCCCCCeeEEEEeecccCCCCCcEE
Q 003360 356 RNSQHLAVGSDQGYVYLLDTEG----PTVLYQKHIA-------------------SDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 356 ~~g~~lasGs~dG~V~vwD~~~----~~~l~~~~~~-------------------~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
++...++++..||.+..+.... +......... ......+.++........ +..+|
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l 233 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEIN--DDTFL 233 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----E--TTTEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeC--CCCEE
Confidence 4566789999999988887764 2111100000 001123444444432111 47899
Q ss_pred EEEECCCcEEEEECCCCceEEeeecc
Q 003360 413 VIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
++.+.|+++|+||+.+++++.+....
T Consensus 234 ~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 234 FTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEETTSEEEEEETTTTCEEEEEETT
T ss_pred EEEeCCCeEEEEECCCCeEEEEeccc
Confidence 99999999999999999998886444
No 426
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=70.91 E-value=2.1e+02 Score=33.32 Aligned_cols=113 Identities=9% Similarity=0.062 Sum_probs=64.5
Q ss_pred cCCCEEEEEEeeC----CCeEEEe-cCCcEEEeccC------CCceeecccccCC--cc---ee-eCCCCCEEEEEECCC
Q 003360 191 LDSSITAMKLITG----NSFILSS-ADEDYSLLAKS------VPPLLDFETKLKD--GS---QS-HSKVKNLFITGHSDG 253 (826)
Q Consensus 191 h~~~Vt~~~fs~~----~~~l~~~-~d~~i~~w~~~------~~~~~~~~~~h~g--~V---~~-~s~~~~~l~Tgs~DG 253 (826)
.-..|..+.|.|- .+.+++. ..+.|.+|... ..++....-.+.. .| -| |||...+|+.=..+.
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 3346788888775 3344444 48889999422 1122221011111 12 12 999999888776665
Q ss_pred cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEe
Q 003360 254 AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-MVRIFKL 312 (826)
Q Consensus 254 tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-~V~iwd~ 312 (826)
.=-+.++.........+++ ..+-|.|-+|.+||+.|+++-.+. +-.|||-
T Consensus 135 vSV~~sV~~d~srVkaDi~---------~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIK---------TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeEeeeeeeCCceEEEecc---------CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 5556666322211112222 236899999999999888775542 4556664
No 427
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=70.51 E-value=1.6e+02 Score=31.74 Aligned_cols=83 Identities=13% Similarity=0.104 Sum_probs=44.8
Q ss_pred eEEEEEccCCCEEEEEec-CCeEEEEecCC--CeeEEe--eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC-cEE
Q 003360 349 IISLNMNRNSQHLAVGSD-QGYVYLLDTEG--PTVLYQ--KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS-SVL 422 (826)
Q Consensus 349 V~~l~~s~~g~~lasGs~-dG~V~vwD~~~--~~~l~~--~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg-~V~ 422 (826)
-+.|+||||++.+..... .+.|.-|++.. +.+--. ........+..-.++... ++.+.+++..+| .|.
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa------dG~lw~~a~~~g~~v~ 238 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA------DGNLWVAAVWGGGRVV 238 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC------CCCEEEecccCCceEE
Confidence 577999999987776655 47777777652 111000 000000111111122222 344443555554 899
Q ss_pred EEECCCCceEEeeecc
Q 003360 423 VLDSDNGNMLSTNLIH 438 (826)
Q Consensus 423 iwd~~tg~~i~~~~~~ 438 (826)
+|+.. |+.+..+.+.
T Consensus 239 ~~~pd-G~l~~~i~lP 253 (307)
T COG3386 239 RFNPD-GKLLGEIKLP 253 (307)
T ss_pred EECCC-CcEEEEEECC
Confidence 99999 9999886443
No 428
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.12 E-value=0.93 Score=50.13 Aligned_cols=143 Identities=13% Similarity=0.150 Sum_probs=91.4
Q ss_pred EeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCC-EEEEEECCCcEEEEeCCCCceeeeeeccccc
Q 003360 200 LITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWDVSCPLFLLILSLKQQS 275 (826)
Q Consensus 200 fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~ 275 (826)
+.+.+..++.+. +-++..|+......... ..++.... |..++. .++.+...+.+.+||+..... .+++..
T Consensus 42 w~~e~~nlavaca~tiv~~YD~agq~~le~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt---qqLE~g- 115 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDKAGQVILEL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT---QQLESG- 115 (615)
T ss_pred EecCCCceehhhhhhHHHhhhhhcceeccc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH---HHHhcc-
Confidence 455555566666 77777776554333322 12222222 555555 556678889999999944331 112211
Q ss_pred ccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEc
Q 003360 276 EKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN 355 (826)
Q Consensus 276 ~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s 355 (826)
....-.-+.|++....++.|...|.++||+..+.... .+.++|...++++++.
T Consensus 116 ------g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~i---------------------iv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 116 ------GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI---------------------IVMGKHQRRGTQIAVT 168 (615)
T ss_pred ------CcchHHHHhhccCCccccccccccceEEEeccchhhh---------------------hhhcccccceeEEEec
Confidence 1112223789999999999999999999998744321 4566677889999999
Q ss_pred cCCCEEEEEecCCeEEEEecC
Q 003360 356 RNSQHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 356 ~~g~~lasGs~dG~V~vwD~~ 376 (826)
+.+ +++.++.|.++.+-...
T Consensus 169 lEd-~vil~dcd~~L~v~~qe 188 (615)
T KOG2247|consen 169 LED-YVILCDCDNTLSVTTQE 188 (615)
T ss_pred ccc-eeeecCcHHHHHHhhhc
Confidence 988 57778888776655443
No 429
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=68.99 E-value=2.9e+02 Score=34.08 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=77.7
Q ss_pred CCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEE
Q 003360 284 IPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLA 362 (826)
Q Consensus 284 ~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~la 362 (826)
.+...|+|+|. .+.||+-...|...||++..........+. +.....|.. +.-......-..+.|.++...|+
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-~~~~~~gsi-----~~d~~e~s~w~rI~W~~~~~~lL 219 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-LSRNISGSI-----IFDPEELSNWKRILWVSDSNRLL 219 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCccee-eccCCCccc-----cCCCcccCcceeeEecCCCCEEE
Confidence 57789999985 468999999999999999332221111111 111111110 00000013345788988888888
Q ss_pred EEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 363 VGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 363 sGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+++.. .+.++|+.+....... ........|..+.-++. +..+++..++ ..|..++..+
T Consensus 220 v~~r~-~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~-----~~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 220 VCNRS-KLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPD-----NPSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred EEcCC-ceEEEECCCCCccchh-ccCCChhheeeEEecCC-----ccceEEEEec-CeEEEEEccC
Confidence 88766 4689999877553111 11234456777776663 3456666664 6687888775
No 430
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=68.16 E-value=1.5e+02 Score=31.55 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=49.7
Q ss_pred cCCeEEEEEccCCCEEEEEe------cCCeEEEEecCCCeeEEeee-cccCCCCCeeEEEEeecccCCCCCcEEE-EEE-
Q 003360 346 NGSIISLNMNRNSQHLAVGS------DQGYVYLLDTEGPTVLYQKH-IASDISSGIVSLQFETCSLQGFEKNFLV-IAT- 416 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs------~dG~V~vwD~~~~~~l~~~~-~~~~~~~~V~sl~f~~~~~~~~d~~~l~-sgs- 416 (826)
.+.|++|.|..+.++++.|. ....+..||..+.+...... ......++|+.+.+... |...++ .|.
T Consensus 36 ~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~-----d~~~~~~aG~~ 110 (281)
T PF12768_consen 36 SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISN-----DGSNFWVAGRS 110 (281)
T ss_pred eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeecc-----CCceEEEecee
Confidence 67899999987777777775 45678899998776431111 00123578888888653 343344 443
Q ss_pred CCC--cEEEEECCCCce
Q 003360 417 KDS--SVLVLDSDNGNM 431 (826)
Q Consensus 417 ~Dg--~V~iwd~~tg~~ 431 (826)
.++ .|..||-.....
T Consensus 111 ~~g~~~l~~~dGs~W~~ 127 (281)
T PF12768_consen 111 ANGSTFLMKYDGSSWSS 127 (281)
T ss_pred cCCCceEEEEcCCceEe
Confidence 333 467776554333
No 431
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=66.15 E-value=1.9e+02 Score=32.16 Aligned_cols=98 Identities=6% Similarity=-0.020 Sum_probs=41.7
Q ss_pred CEEEEEEeeCCCeEEEe----c-CCc-EEEe--ccCCCceeecccccCCccee----eCCCCCEEEE-EE-C---CCcEE
Q 003360 194 SITAMKLITGNSFILSS----A-DED-YSLL--AKSVPPLLDFETKLKDGSQS----HSKVKNLFIT-GH-S---DGAIN 256 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~----~-d~~-i~~w--~~~~~~~~~~~~~h~g~V~~----~s~~~~~l~T-gs-~---DGtVr 256 (826)
-+..+.|+|..+.++.= - +.. -|+| +......... ..+..+..+ |.++|..|.- +. . +..|.
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v-~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV-HRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES-S---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee-ecCCCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 34567899988877762 2 443 4888 3333333333 233334434 8899885543 22 2 22444
Q ss_pred EEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 257 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
-.|........+... .+...+--++++.+++-=+.|
T Consensus 268 ~~d~~t~~~~~~~~~------------p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 268 GYDPDTGERRRLMEM------------PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EE-TTT--EEEEEEE-------------SEEEEEE-TTSSEEEEEE--
T ss_pred eeCCCCCCceEEEeC------------CceeeeEEcCCCCEEEecCCC
Confidence 455532221111111 133345557888877653443
No 432
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=66.12 E-value=76 Score=37.12 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=47.9
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC------CCcEEEEECCCCce
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK------DSSVLVLDSDNGNM 431 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~------Dg~V~iwd~~tg~~ 431 (826)
+..|++++.||.|.-+|..+++++........ ... ..+.-.|.. .+..+++++. +|.|..+|..||+.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~-~~~-~~~tssP~v----~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDY-KAG-YTITAAPLV----VKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccc-ccc-ccccCCcEE----ECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 34688899999999999999999976553211 100 001111110 1345666543 68999999999999
Q ss_pred EEeeec
Q 003360 432 LSTNLI 437 (826)
Q Consensus 432 i~~~~~ 437 (826)
+-.+..
T Consensus 194 lW~~~~ 199 (527)
T TIGR03075 194 VWRRYT 199 (527)
T ss_pred eEeccC
Confidence 877543
No 433
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=65.21 E-value=20 Score=36.51 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=50.0
Q ss_pred EeCCCCEEEEEeCCCcEEEEEeCCCCCcccc-ceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCe
Q 003360 291 YDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN-SFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGY 369 (826)
Q Consensus 291 fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~-~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~ 369 (826)
+...+.+|++-+.+|.+++||+.+....... ++..+-.... . .. ......|+.+.++.+|.-+++ -.+|.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~------~~-~~~~~~i~~~~lt~~G~PiV~-lsng~ 88 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-V------SD-KSSSPNITSCSLTSNGVPIVT-LSNGD 88 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-c------cc-CCCCCcEEEEEEcCCCCEEEE-EeCCC
Confidence 4567888999999999999999977553322 1111100000 0 00 022455889999988875554 55688
Q ss_pred EEEEecCCCe
Q 003360 370 VYLLDTEGPT 379 (826)
Q Consensus 370 V~vwD~~~~~ 379 (826)
.+.||..-+.
T Consensus 89 ~y~y~~~L~~ 98 (219)
T PF07569_consen 89 SYSYSPDLGC 98 (219)
T ss_pred EEEeccccce
Confidence 8999876544
No 434
>PRK13684 Ycf48-like protein; Provisional
Probab=65.14 E-value=2.1e+02 Score=31.16 Aligned_cols=155 Identities=10% Similarity=0.125 Sum_probs=78.7
Q ss_pred CCccee--eCCCCCEEEEEECCCcEE-EEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003360 233 KDGSQS--HSKVKNLFITGHSDGAIN-FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRI 309 (826)
Q Consensus 233 ~g~V~~--~s~~~~~l~Tgs~DGtVr-iWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~i 309 (826)
.+.+.+ +.+++.++++|. .|.+. -+|..+..... +. ......++++.+.++++.+++| ..|.+++
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~---~~-------~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~ 239 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTP---HQ-------RNSSRRLQSMGFQPDGNLWMLA-RGGQIRF 239 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEE---ee-------CCCcccceeeeEcCCCCEEEEe-cCCEEEE
Confidence 344455 677776665554 45443 33433333222 11 1123578999999999887776 5576542
Q ss_pred EEeCCCCCccccceEEEeecCCCCeEEEEEEEE--eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 310 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV--MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 310 wd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~--~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
=.-..+ ..... +.. ......+.++.+.+++..+++| .+|.|. .....++--......
T Consensus 240 ~s~d~G-----------------~sW~~--~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~ 298 (334)
T PRK13684 240 NDPDDL-----------------ESWSK--PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVG 298 (334)
T ss_pred ccCCCC-----------------Ccccc--ccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcC
Confidence 111211 11000 000 0012347889999988755554 567653 334333322111111
Q ss_pred cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 388 SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 388 ~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
.........+.|.. .+..+..+..|.|..|+..
T Consensus 299 ~~~~~~~~~~~~~~-------~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 299 EEVPSNFYKIVFLD-------PEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCCCcceEEEEEeC-------CCceEEECCCceEEEecCC
Confidence 12223466666665 4556677778888777643
No 435
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=65.09 E-value=2.2e+02 Score=31.91 Aligned_cols=199 Identities=15% Similarity=0.144 Sum_probs=102.7
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEec--cCCCc
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLA--KSVPP 224 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~--~~~~~ 224 (826)
.++..+.+.++.+||...-..++. .+ ..+..+....++..-+.|..+-..|+++.+..-....+.++. .+.-.
T Consensus 180 lalA~~~~~qf~~~~~t~~~~~L~-g~----~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~ 254 (733)
T COG4590 180 LALALTAEAQFATYDNTQQIQILR-GD----RTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQ 254 (733)
T ss_pred hhhccchhhHHHHhhhhhhhhhhh-cc----cCchhhhhhhcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccc
Confidence 345666677777777665433331 11 111111112244555677888889999998775534444442 22111
Q ss_pred eeecccccCCc----cee---eCCCCCEEEEEECCCcEEEEe-C-CCCceeeeeecccccccccccCCCCeEEEEEeCCC
Q 003360 225 LLDFETKLKDG----SQS---HSKVKNLFITGHSDGAINFWD-V-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS 295 (826)
Q Consensus 225 ~~~~~~~h~g~----V~~---~s~~~~~l~Tgs~DGtVriWD-~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~ 295 (826)
.........|. |+. .-..+.-+.+++.||-|.-|= + .++.. .+..++ .++....+|..+.=..+.
T Consensus 255 ~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p-~l~h~R-----~f~l~pa~~~~l~pe~~r 328 (733)
T COG4590 255 IRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQP-HLNHIR-----NFKLAPAEVQFLLPETNR 328 (733)
T ss_pred hhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCC-cceeee-----ccccCcccceeecccccc
Confidence 11110111121 221 244566788999999998874 4 22221 001111 122333445444333334
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEec
Q 003360 296 RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 375 (826)
Q Consensus 296 ~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~ 375 (826)
+-+++=+..|++.+|--..... +-+...-..+.-+++||.+.++++- +.|.++++.+
T Consensus 329 kgF~~l~~~G~L~~f~st~~~~----------------------lL~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l 385 (733)
T COG4590 329 KGFYSLYRNGTLQSFYSTSEKL----------------------LLFERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQL 385 (733)
T ss_pred ceEEEEcCCCceeeeecccCcc----------------------eehhhhhcCcceeeeCcccchheee-cCCceEEEEe
Confidence 5566667777776655431111 1111223356678999999888864 4567888887
Q ss_pred CCCe
Q 003360 376 EGPT 379 (826)
Q Consensus 376 ~~~~ 379 (826)
.+..
T Consensus 386 ~Nr~ 389 (733)
T COG4590 386 ENRN 389 (733)
T ss_pred cCCC
Confidence 6654
No 436
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=64.33 E-value=38 Score=35.20 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=46.4
Q ss_pred cCCeEEEEEcc-------CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 346 NGSIISLNMNR-------NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 346 ~~~V~~l~~s~-------~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
...|+||+--. .-..|+.|.++|.|.|.|....+++.+..+.. -|+.=.....+ ..-+-.|++++.|
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lps---vPv~i~~~G~~---devdyRI~Va~Rd 249 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPS---VPVFISVSGQY---DEVDYRIVVACRD 249 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCC---CceEEEEEeee---eccceEEEEEeCC
Confidence 34467776521 12469999999999999999988887665432 23321122211 0014568889999
Q ss_pred CcEEEE
Q 003360 419 SSVLVL 424 (826)
Q Consensus 419 g~V~iw 424 (826)
|.|++.
T Consensus 250 g~iy~i 255 (257)
T PF14779_consen 250 GKIYTI 255 (257)
T ss_pred CEEEEE
Confidence 998875
No 437
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=63.27 E-value=9.4 Score=44.93 Aligned_cols=94 Identities=12% Similarity=-0.026 Sum_probs=48.2
Q ss_pred CCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE-E-----EEeeccCCeEEEEEcc----CCCEEE
Q 003360 293 GTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS-V-----KVMKINGSIISLNMNR----NSQHLA 362 (826)
Q Consensus 293 p~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~-~-----~~~~~~~~V~~l~~s~----~g~~la 362 (826)
++...|+++..||.+...+...... .........++..+....+.+ + ......+.+.+++++. +..+|+
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDS-DGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES-----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccC-CCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 4667889999999988888775220 001111111110000000000 0 0001123455666655 667899
Q ss_pred EEecCCeEEEEecCCCeeEEeeecc
Q 003360 363 VGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 363 sGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
+-+.|+++|+||+.++.++.+..+.
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEETT
T ss_pred EEeCCCeEEEEECCCCeEEEEeccc
Confidence 9999999999999999998766543
No 438
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.19 E-value=78 Score=40.01 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=49.2
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
..+..|..++.+..+...++......-+.+-.|...... ..-.+...+.. ...++..++++|.||++.+||.+...+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 192 LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKY-VQSAYLPNGQL--ESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccccccccccceeeeecCCCcceeeeeeeeeehhccccc-chhhccccccc--CccCCceEEEEEecCCEEeeecCCCce
Confidence 345778888889888888777666555555555332111 11101111111 267789999999999999999966543
Q ss_pred e
Q 003360 266 L 266 (826)
Q Consensus 266 ~ 266 (826)
+
T Consensus 269 ~ 269 (993)
T KOG1983|consen 269 Q 269 (993)
T ss_pred e
Confidence 3
No 439
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=62.78 E-value=2.6e+02 Score=31.31 Aligned_cols=114 Identities=19% Similarity=0.270 Sum_probs=63.7
Q ss_pred CeEEEEEeCCCCEEEEE-eCCC----cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC
Q 003360 285 PLTALYYDGTSRVLVSG-DQSG----MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ 359 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasg-s~dg----~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 359 (826)
.+...+++|++++||.+ +..| +|+++|+.++.. +........-..+.|.+++.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~----------------------l~d~i~~~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF----------------------LPDGIENPKFSSVSWSDDGK 182 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE----------------------EEEEEEEEESEEEEECTTSS
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC----------------------cCCcccccccceEEEeCCCC
Confidence 34467889999988865 3333 599999985522 11110011123489999988
Q ss_pred EEEEEecCC-----------eEEEEecCCCe----eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC----Cc
Q 003360 360 HLAVGSDQG-----------YVYLLDTEGPT----VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD----SS 420 (826)
Q Consensus 360 ~lasGs~dG-----------~V~vwD~~~~~----~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D----g~ 420 (826)
.++....+. .|+.|.+.++. ++|... ........+..+. |+.+|+..... ..
T Consensus 183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~---~~~~~~~~~~~s~------d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP---DEPFWFVSVSRSK------DGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T---TCTTSEEEEEE-T------TSSEEEEEEESSSSEEE
T ss_pred EEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec---CCCcEEEEEEecC------cccEEEEEEEccccCCe
Confidence 776655333 37777776653 342221 1111244555555 57777654432 34
Q ss_pred EEEEECCCC
Q 003360 421 VLVLDSDNG 429 (826)
Q Consensus 421 V~iwd~~tg 429 (826)
+.+.+...+
T Consensus 254 v~~~d~~~~ 262 (414)
T PF02897_consen 254 VYLLDLDDG 262 (414)
T ss_dssp EEEEECCCT
T ss_pred EEEEecccc
Confidence 788887764
No 440
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=61.74 E-value=3.2e+02 Score=32.00 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=41.4
Q ss_pred CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 368 GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 368 G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
|.|.-||+.+++++.+........... ... .+..+++++.||.++.+|.+||+.+-.+..
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~----l~t------~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV----LAT------AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc----eEE------CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 668888999998886654321111110 111 256788888899999999999999987644
No 441
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=60.67 E-value=2.3e+02 Score=30.08 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=65.8
Q ss_pred CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe------CCCcEEEEEeCCCCCccccceEEE
Q 003360 253 GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD------QSGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 253 GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs------~dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
..|++||....+... +. ..-.+.|+.|.|..+.+++++|. ....+..||+...... .+
T Consensus 16 ~~lC~yd~~~~qW~~---~g-------~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~------~~ 79 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS---PG-------NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS------SL 79 (281)
T ss_pred CEEEEEECCCCEeec---CC-------CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee------ec
Confidence 468999986666411 11 01226899999997777888774 4557888888754221 00
Q ss_pred eecCCCCeEEEEEEEEeeccCCeEEEEEcc-C-CCEEEEEe-cCCe--EEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 327 TGSKKGNSHIIHSVKVMKINGSIISLNMNR-N-SQHLAVGS-DQGY--VYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 327 ~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-~-g~~lasGs-~dG~--V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
. .+. .....++|+.+.+.. + .++.+.|. .+|. |..||=.+..-+ ..-.......|..+.+.+
T Consensus 80 ~---~~~--------s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i--~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 80 G---GGS--------SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI--GSDILGSGTTIRGLQVLP 146 (281)
T ss_pred C---Ccc--------cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEec--cccccCCCCEEEEEEEEe
Confidence 0 000 011357788887742 2 33454544 3443 555554333332 110112345677787777
Q ss_pred c
Q 003360 402 C 402 (826)
Q Consensus 402 ~ 402 (826)
.
T Consensus 147 l 147 (281)
T PF12768_consen 147 L 147 (281)
T ss_pred c
Confidence 5
No 442
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.89 E-value=2e+02 Score=32.98 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=53.4
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEec---------CCCe--eEE-eeec-----ccCCCCCeeEEEEeecccCCCCCc
Q 003360 348 SIISLNMNRNSQHLAVGSDQGYVYLLDT---------EGPT--VLY-QKHI-----ASDISSGIVSLQFETCSLQGFEKN 410 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~dG~V~vwD~---------~~~~--~l~-~~~~-----~~~~~~~V~sl~f~~~~~~~~d~~ 410 (826)
.|..+..++.|..+|..+.+|.+.+.=. ..++ +.. ++.+ .+...-.+....|+|.+.. ..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~---D~ 181 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSIL---DP 181 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccC---Cc
Confidence 3788889999999999999997655321 1221 111 1111 0112234556778885221 57
Q ss_pred EEEEEECCCcEEEEECCCCceEEe
Q 003360 411 FLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 411 ~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.|..-++|..|++||...-..+..
T Consensus 182 hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred eEEEEecCcEEEEEecCCcchhhc
Confidence 888899999999999986665533
No 443
>PHA03098 kelch-like protein; Provisional
Probab=59.27 E-value=3.4e+02 Score=31.60 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=33.5
Q ss_pred CCCCCEEEEEECCC------cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-----cEE
Q 003360 240 SKVKNLFITGHSDG------AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-----MVR 308 (826)
Q Consensus 240 s~~~~~l~Tgs~DG------tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-----~V~ 308 (826)
..++.+++.|+.++ .+..||........+..+. ........+. -++.+++.|+.++ .|.
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~--------~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~ 361 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI--------YPRKNPGVTV--FNNRIYVIGGIYNSISLNTVE 361 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC--------cccccceEEE--ECCEEEEEeCCCCCEecceEE
Confidence 34456777777543 4667777555542211111 0111122222 2567778887653 456
Q ss_pred EEEeCCC
Q 003360 309 IFKLKYE 315 (826)
Q Consensus 309 iwd~~~~ 315 (826)
.||..++
T Consensus 362 ~yd~~~~ 368 (534)
T PHA03098 362 SWKPGES 368 (534)
T ss_pred EEcCCCC
Confidence 6666543
No 444
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=59.17 E-value=26 Score=24.49 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.6
Q ss_pred EEEEEECCCcEEEEECCCCceEEeee
Q 003360 411 FLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 411 ~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
.+++++.||.|+.+|..||+.+-.+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 46777999999999999999997764
No 445
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=58.04 E-value=3.2e+02 Score=30.86 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=68.1
Q ss_pred ccccceEEEecCC-----CCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEee--eC
Q 003360 12 ETKQVTSACWACP-----IGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVY--AD 84 (826)
Q Consensus 12 ~~~~i~slcW~~p-----~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~--~~ 84 (826)
|+=..-|+|-..- +..+|++|+.+|.|+|++....... ...-+...++ ..||..+.... ..
T Consensus 18 e~~d~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~-------~~~lllE~~l-----~~PILqv~~G~F~s~ 85 (418)
T PF14727_consen 18 EEFDQGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQ-------PEDLLLETQL-----KDPILQVECGKFVSG 85 (418)
T ss_pred CcCcCceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCC-------CccEEEEEec-----CCcEEEEEeccccCC
Confidence 3334456665543 3469999999999999987443100 0011111222 34787776643 22
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcc------eeE--EEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCcc
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTES------RTT--KLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGH 156 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~------~~~--~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~ 156 (826)
...-.|.|.. +..+.+..+....+. -.+ .....+...-..|+..+ +.+......+.|-+-+|.
T Consensus 86 ~~~~~LaVLh------P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~---Fgg~~~~~~IcVQS~DG~ 156 (418)
T PF14727_consen 86 SEDLQLAVLH------PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGP---FGGVKGRDFICVQSMDGS 156 (418)
T ss_pred CCcceEEEec------CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEE---CCCCCCceEEEEEecCce
Confidence 2333343332 223333333222111 111 12233344444454443 323343577888899999
Q ss_pred EEEecchh
Q 003360 157 FYAFDDCQ 164 (826)
Q Consensus 157 l~~~d~~~ 164 (826)
|.+|+-..
T Consensus 157 L~~feqe~ 164 (418)
T PF14727_consen 157 LSFFEQES 164 (418)
T ss_pred EEEEeCCc
Confidence 99998776
No 446
>PHA03098 kelch-like protein; Provisional
Probab=57.39 E-value=3.7e+02 Score=31.35 Aligned_cols=67 Identities=10% Similarity=0.220 Sum_probs=35.8
Q ss_pred eCCCCCEEEEEECCC--------cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-----C
Q 003360 239 HSKVKNLFITGHSDG--------AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-----G 305 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DG--------tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-----g 305 (826)
...++.+++.|+.++ .+.+||........+..+. ........+.+ ++.+++.|+.+ .
T Consensus 434 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 503 (534)
T PHA03098 434 IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN--------FPRINASLCIF--NNKIYVVGGDKYEYYIN 503 (534)
T ss_pred EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC--------cccccceEEEE--CCEEEEEcCCcCCcccc
Confidence 334567778876532 3778888666543321111 01111122222 66777778765 4
Q ss_pred cEEEEEeCCC
Q 003360 306 MVRIFKLKYE 315 (826)
Q Consensus 306 ~V~iwd~~~~ 315 (826)
.|.+||..++
T Consensus 504 ~v~~yd~~~~ 513 (534)
T PHA03098 504 EIEVYDDKTN 513 (534)
T ss_pred eeEEEeCCCC
Confidence 6777877644
No 447
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=55.66 E-value=1.8e+02 Score=27.15 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=60.6
Q ss_pred CCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-----CCCEEEEEeCCCcEEEEEeCC
Q 003360 240 SKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-----TSRVLVSGDQSGMVRIFKLKY 314 (826)
Q Consensus 240 s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-----~~~~Lasgs~dg~V~iwd~~~ 314 (826)
.....-|+.++.-|.|-|.+........ ...+....+---...|++|+-.+ +...|+.|+.. .+..||+..
T Consensus 7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~---~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~ 82 (136)
T PF14781_consen 7 DGVHPCLACATTGGKVFIHNPHERGQRT---GRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVEN 82 (136)
T ss_pred CCCceeEEEEecCCEEEEECCCcccccc---ccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEccc
Confidence 3344567777788888888873221000 00000000001124677776443 34578888766 588999986
Q ss_pred CCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEc---c-CCCEEEEEecCCeEEEEecCCCeeEEe
Q 003360 315 EPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN---R-NSQHLAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 315 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s---~-~g~~lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
+... -+......|.++.+- . ...++++|+ +..|.-+|....+..++
T Consensus 83 N~d~----------------------Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 83 NSDL----------------------FYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred Cchh----------------------hhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 5331 111123345555552 1 233444444 55778888876666543
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=51.77 E-value=2.5e+02 Score=32.44 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=35.9
Q ss_pred CCCCCEEEEEECC--CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEeCC
Q 003360 240 SKVKNLFITGHSD--GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG---MVRIFKLKY 314 (826)
Q Consensus 240 s~~~~~l~Tgs~D--GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg---~V~iwd~~~ 314 (826)
.-++.+++.|+.+ .++..||........+..+. ........+ .-++++.+.|+.++ .+..||.++
T Consensus 316 ~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~--------~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 316 PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL--------KPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred EECCEEEEECCcCCCCceEEEECCCCeEEECCCCC--------CCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCC
Confidence 3567888888864 36788887555442222221 011111112 23577778887654 366777664
Q ss_pred C
Q 003360 315 E 315 (826)
Q Consensus 315 ~ 315 (826)
+
T Consensus 386 ~ 386 (480)
T PHA02790 386 D 386 (480)
T ss_pred C
Confidence 3
No 449
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=50.97 E-value=31 Score=22.81 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=22.1
Q ss_pred CcEEEEEECCCcEEEEECCCCceEEe
Q 003360 409 KNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
+..+++++.+|.+..+|..+|+.+-+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 44688899999999999999988754
No 450
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=50.51 E-value=3.5e+02 Score=29.07 Aligned_cols=139 Identities=11% Similarity=0.166 Sum_probs=68.5
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
..+..+.-+++++++++++.-....-|+-....- . .........|.+|.|+|++.+.++
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w------------------~---~~~r~~~~riq~~gf~~~~~lw~~ 203 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW------------------Q---PHNRNSSRRIQSMGFSPDGNLWML 203 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-------------------E---EEE--SSS-EEEEEE-TTS-EEEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccc------------------e---EEccCccceehhceecCCCCEEEE
Confidence 6788889999999999987766666777542111 1 111223556999999999876554
Q ss_pred EecCCeEEEEecCCCeeEEeeeccc--CCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 364 GSDQGYVYLLDTEGPTVLYQKHIAS--DISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 364 Gs~dG~V~vwD~~~~~~l~~~~~~~--~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
+ ..|.|+.=|.....-.+...... ...-.+..++|.+ ...+++++..|++ +.....|+-=..-......
T Consensus 204 ~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-------~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~ 274 (302)
T PF14870_consen 204 A-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-------PNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENV 274 (302)
T ss_dssp E-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-------SS-EEEEESTT-E-EEESSTTSS-EE-GGGTTS
T ss_pred e-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-------CCCEEEEeCCccE-EEeCCCCccceECccccCC
Confidence 4 88888887722221122121111 1223477888887 4556666666654 3344556544433233344
Q ss_pred CCcceEEEEec
Q 003360 442 PSRALFMQILN 452 (826)
Q Consensus 442 ~~~~lsi~~l~ 452 (826)
+.....+.+.+
T Consensus 275 ~~n~~~i~f~~ 285 (302)
T PF14870_consen 275 PSNLYRIVFVN 285 (302)
T ss_dssp SS---EEEEEE
T ss_pred CCceEEEEEcC
Confidence 55555566654
No 451
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=50.06 E-value=2.2e+02 Score=34.94 Aligned_cols=79 Identities=9% Similarity=0.070 Sum_probs=47.4
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCC-----CCCeeEEEEeecccCCCCCcEEEEEEC----------CCcEE
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI-----SSGIVSLQFETCSLQGFEKNFLVIATK----------DSSVL 422 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~-----~~~V~sl~f~~~~~~~~d~~~l~sgs~----------Dg~V~ 422 (826)
+.+|++++.||.+.-+|.++++.+..+...... -.......+.....+-..+..+++|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 457889999999999999999988554311000 000000001000000001456777753 68899
Q ss_pred EEECCCCceEEeee
Q 003360 423 VLDSDNGNMLSTNL 436 (826)
Q Consensus 423 iwd~~tg~~i~~~~ 436 (826)
-+|..||+.+-.+.
T Consensus 340 A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 340 AFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCcEeeEEe
Confidence 99999999987753
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.99 E-value=2e+02 Score=32.36 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=47.6
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE
Q 003360 282 SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL 361 (826)
Q Consensus 282 h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 361 (826)
..++|.++.|++|.+.||+--.+.+|.++++...+.... ....|+ .....|....|+.+. -+
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~----------~~~~ck-------~k~~~IlGF~W~~s~-e~ 126 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE----------YTQECK-------TKNANILGFCWTSST-EI 126 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH----------HHHHhc-------cCcceeEEEEEecCe-eE
Confidence 347999999999999999999999999999863321100 000000 012347888888764 46
Q ss_pred EEEecCCeEEEEe
Q 003360 362 AVGSDQGYVYLLD 374 (826)
Q Consensus 362 asGs~dG~V~vwD 374 (826)
|.-+..| +-+|-
T Consensus 127 A~i~~~G-~e~y~ 138 (657)
T KOG2377|consen 127 AFITDQG-IEFYQ 138 (657)
T ss_pred EEEecCC-eEEEE
Confidence 6666665 34443
No 453
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=47.60 E-value=6.3e+02 Score=31.15 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=45.9
Q ss_pred CCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeE--EeeecccCCC----------CCeeEEEEeecccCCCCCcEEE
Q 003360 347 GSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVL--YQKHIASDIS----------SGIVSLQFETCSLQGFEKNFLV 413 (826)
Q Consensus 347 ~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l--~~~~~~~~~~----------~~V~sl~f~~~~~~~~d~~~l~ 413 (826)
.+...++|+|. ...+|+-...|...|||+...... -......... +....+.|.. +...|+
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~------~~~~lL 219 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS------DSNRLL 219 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC------CCCEEE
Confidence 35788999984 457999999999999999211110 0001111111 2233556654 355666
Q ss_pred EEECCCcEEEEECCCCce
Q 003360 414 IATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 414 sgs~Dg~V~iwd~~tg~~ 431 (826)
+++ ...+.++|+.++..
T Consensus 220 v~~-r~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 220 VCN-RSKLMLIDFESNWQ 236 (765)
T ss_pred EEc-CCceEEEECCCCCc
Confidence 655 44578888876654
No 454
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=47.04 E-value=40 Score=22.29 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=20.7
Q ss_pred EEEEEecCCeEEEEecCCCeeEEe
Q 003360 360 HLAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 360 ~lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
.+.+++.+|.+..+|..+++.+++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 688889999999999999988754
No 455
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.95 E-value=23 Score=34.01 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=32.0
Q ss_pred hHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHH
Q 003360 775 SVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAK 813 (826)
Q Consensus 775 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~ 813 (826)
.+..+.-..+.||||||..+-++.+.|-...+-|=+.|+
T Consensus 151 iiLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAK 189 (198)
T KOG0861|consen 151 IILHKTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAK 189 (198)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHh
Confidence 345556667889999999999999999888888877775
No 456
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=41.93 E-value=5.5e+02 Score=28.86 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=25.4
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEecCC
Q 003360 348 SIISLNMNRNSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~dG~V~vwD~~~ 377 (826)
.|.+|+..+..+.+++-+.+|.|.+||+..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 499999999889999999999999999974
No 457
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=41.85 E-value=56 Score=22.77 Aligned_cols=27 Identities=33% Similarity=0.653 Sum_probs=23.1
Q ss_pred EEEEEecCCeEEEEecCCCeeEEeeec
Q 003360 360 HLAVGSDQGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 360 ~lasGs~dG~V~vwD~~~~~~l~~~~~ 386 (826)
.+.+++.||.|+-+|.++|+.+.....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 467779999999999999999977664
No 458
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=40.74 E-value=95 Score=37.38 Aligned_cols=151 Identities=10% Similarity=0.115 Sum_probs=85.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccc
Q 003360 243 KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 243 ~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~ 322 (826)
...+..|+++|.+-|+.-+.+.. ...... .+.....+|.++.+++. .+..|..||++-.|--.....
T Consensus 547 ~PTic~gtq~ssisissss~~s~-ke~~~~-----~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gS----- 613 (925)
T KOG3522|consen 547 HPTICLGTQTSSISISSSSLDSI-KEVTSE-----PPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGS----- 613 (925)
T ss_pred CCcccccCccceeEEeeccCCcc-cceecc-----CCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCC-----
Confidence 34678899999999998742220 001111 01112256666666554 466677888887764321111
Q ss_pred eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeec
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
.++.+. ........+|.++++..| ++.|+++|.|.|+...+............+...|+++.+..
T Consensus 614 -------wd~ep~----~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~- 678 (925)
T KOG3522|consen 614 -------WDGEPN----ISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLD- 678 (925)
T ss_pred -------CCCCCc----cccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeC-
Confidence 122110 111122457889988876 67788999999999877665544444445666788887764
Q ss_pred ccCCCCCcEEEEEECCCcEEEEECC
Q 003360 403 SLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 403 ~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
....++-++...++.++..
T Consensus 679 ------~gVwvafasG~~~rlfhte 697 (925)
T KOG3522|consen 679 ------NGVWVAFASGDEERLFHTE 697 (925)
T ss_pred ------CceEEEEcCCCEEEEeccc
Confidence 3333333333345555544
No 459
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=40.01 E-value=1.3e+02 Score=31.50 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=30.1
Q ss_pred CCCeeEEEEeecccCCC-CCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 391 SSGIVSLQFETCSLQGF-EKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~-d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
...|+++.-........ .-.+|+.|+.+|.|+|+|...-..+..
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~ 220 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQ 220 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEE
Confidence 44577776544322221 257899999999999999986555555
No 460
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.84 E-value=4.9e+02 Score=27.66 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=28.5
Q ss_pred cCCeEEEEEccCCCEEEEEecC-CeEEEEecCCCeeEEeee
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQ-GYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~d-G~V~vwD~~~~~~l~~~~ 385 (826)
...|-+++.+.+..+++..+-. +...+||..++.++....
T Consensus 279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence 4458888888766677666644 456799999999884433
No 461
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=39.61 E-value=4.5e+02 Score=27.24 Aligned_cols=126 Identities=14% Similarity=0.079 Sum_probs=61.8
Q ss_pred eCCCCCEEEEEEC-C--CcEEEEeCCC--CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEe
Q 003360 239 HSKVKNLFITGHS-D--GAINFWDVSC--PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-MVRIFKL 312 (826)
Q Consensus 239 ~s~~~~~l~Tgs~-D--GtVriWD~s~--~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-~V~iwd~ 312 (826)
+-++|++|++|+. | ..||+++... .. +..... ... ......=-.+.--|||+.|++|+... +..+|.-
T Consensus 74 ~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~----~~w~e~-~~~-m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 74 FLPDGRLLQTGGDNDGNKAIRIFTPCTSDGT----CDWTES-PND-MQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred CCCCCCEEEeCCCCccccceEEEecCCCCCC----CCceEC-ccc-ccCCCccccceECCCCCEEEEeCcCCCcccccCC
Confidence 7899999999865 3 3588888622 11 001000 000 11111222333457899999998873 2333332
Q ss_pred CCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee
Q 003360 313 KYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 313 ~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
... ......+.++....+. ....----+-..|+|++++.+..++ .|||..+.+++..+
T Consensus 148 ~~~-~~~~~~~~~l~~~~~~-----------~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 148 KGP-GPGPVTLPFLSQTSDT-----------LPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred ccC-CCCceeeecchhhhcc-----------CccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 111 0000000000000000 0011122355689999888888764 47899888776433
No 462
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=39.44 E-value=73 Score=22.06 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=19.7
Q ss_pred ccccceEEEecCCCCCEEEEEEe-c--CcEEEE
Q 003360 12 ETKQVTSACWACPIGSKVAVGYS-N--GEILIW 41 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~-D--GsI~iW 41 (826)
......+.+| +|||+.|+-... + |.--||
T Consensus 7 ~~~~~~~p~~-SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAW-SPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE--TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEE-ecCCCEEEEEecCCCCCCcCEE
Confidence 3446678888 689998886665 3 666665
No 463
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=39.32 E-value=87 Score=21.81 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=22.1
Q ss_pred cCCCEEEEEe-cCCeEEEEecCCCeeEEeee
Q 003360 356 RNSQHLAVGS-DQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 356 ~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~ 385 (826)
|++++|.+++ .+++|.++|..+++.+....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 4666666655 58899999998888775544
No 464
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=39.06 E-value=6.3e+02 Score=28.90 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=31.6
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS 295 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~ 295 (826)
|.|++++|+|--..|.|++++........+..+... ...........|+|+|+-
T Consensus 37 flPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v---~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 37 WGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEI---VNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCce---eccCCCCceeeEEECCCc
Confidence 678888888776678999887633322122222210 001123678899999874
No 465
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.04 E-value=5.3e+02 Score=27.53 Aligned_cols=176 Identities=13% Similarity=0.160 Sum_probs=98.7
Q ss_pred ccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003360 231 KLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMV 307 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V 307 (826)
+.+..+.+ |+|+.+.|.+-...+.--||=. .+..+ ..+.-. . .| .--.|.+..++++.++-=.+..+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdli---rtiPL~---g--~~--DpE~Ieyig~n~fvi~dER~~~l 152 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLI---RTIPLT---G--FS--DPETIEYIGGNQFVIVDERDRAL 152 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceE---EEeccc---c--cC--ChhHeEEecCCEEEEEehhcceE
Confidence 34555666 9999998888777777777765 55442 223211 0 11 22356777778888877778888
Q ss_pred EEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec-cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeec
Q 003360 308 RIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~ 386 (826)
.++.+..+.... .+. ..... +..... +..--.++|.|....+.++=+-.=+.|+-+....-....+.
T Consensus 153 ~~~~vd~~t~~~--~~~-------~~~i~---L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~ 220 (316)
T COG3204 153 YLFTVDADTTVI--SAK-------VQKIP---LGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHA 220 (316)
T ss_pred EEEEEcCCccEE--ecc-------ceEEe---ccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccc
Confidence 888887442210 000 00000 111111 44567899999988888887777777776654331111111
Q ss_pred ccCCC-------CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 387 ASDIS-------SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 387 ~~~~~-------~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
...+. ..|.++.|.+. .+..|+-+..++.+.-.|.. |+.+..
T Consensus 221 ~~~~~~~~~~f~~DvSgl~~~~~-----~~~LLVLS~ESr~l~Evd~~-G~~~~~ 269 (316)
T COG3204 221 SLDPTADRDLFVLDVSGLEFNAI-----TNSLLVLSDESRRLLEVDLS-GEVIEL 269 (316)
T ss_pred ccCcccccceEeeccccceecCC-----CCcEEEEecCCceEEEEecC-CCeeee
Confidence 11111 23566777763 24455555556666667765 555444
No 466
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=37.59 E-value=4.3e+02 Score=29.11 Aligned_cols=69 Identities=20% Similarity=0.390 Sum_probs=48.7
Q ss_pred CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 357 NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 357 ~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+| .+.+|+.+|.++.+|.++++.++...... . ..+...... ....++.++.++.+...|..+|..+-.+
T Consensus 111 ~G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~~----~---~~~~~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 111 DG-KIYVGSWDGKLYALDASTGTLVWSRNVGG----S---PYYASPPVV--GDGTVYVGTDDGHLYALNADTGTLKWTY 179 (370)
T ss_pred CC-eEEEecccceEEEEECCCCcEEEEEecCC----C---eEEecCcEE--cCcEEEEecCCCeEEEEEccCCcEEEEE
Confidence 66 48999999999999999999997776533 1 222221111 2455666667899999999999987664
No 467
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=36.75 E-value=6.5e+02 Score=28.23 Aligned_cols=113 Identities=10% Similarity=0.076 Sum_probs=63.2
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee---ccCCeEEEEEccCCCE
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK---INGSIISLNMNRNSQH 360 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~---~~~~V~~l~~s~~g~~ 360 (826)
..++.+.|.+++.+++++ ..|.+. |....+.... + .. ..... ....++++.|.+++..
T Consensus 281 ~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~---~---------~~-----f~~~~~~~~~~~l~~v~~~~d~~~ 341 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEE---D---------FD-----FEEADIKSRGFGILDVGYRSKKEA 341 (398)
T ss_pred cceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccc---c---------cc-----eeecccCCCCcceEEEEEcCCCcE
Confidence 578999999998888766 556543 3222111000 0 00 11111 1234899999988875
Q ss_pred EEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 361 LAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 361 lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
+++ +.+|.+.... ..++-=...............+.|.. .+..++.+.+|.|.-|
T Consensus 342 ~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-------~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 342 WAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-------DKKGFVLGNDGVLLRY 396 (398)
T ss_pred EEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-------CCceEEEeCCcEEEEe
Confidence 555 4677665543 33332111111123445677888865 5667777888887655
No 468
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=36.40 E-value=6.4e+02 Score=28.06 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=60.9
Q ss_pred eCCCCCEEEEE-ECCCc----EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC--------
Q 003360 239 HSKVKNLFITG-HSDGA----INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-------- 305 (826)
Q Consensus 239 ~s~~~~~l~Tg-s~DGt----VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-------- 305 (826)
++|+++++|-+ +..|. +++.|+..+.... ..+. ...-..+.|.+++..|+-...+.
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~----------~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIE----------NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEE----------EEESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-Cccc----------ccccceEEEeCCCCEEEEEEeCcccccccCC
Confidence 78888877755 44454 9999995544211 0111 11223499999987766554333
Q ss_pred ---cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc-CC-eEEEEEccCCCEEEEEecC----CeEEEEecC
Q 003360 306 ---MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN-GS-IISLNMNRNSQHLAVGSDQ----GYVYLLDTE 376 (826)
Q Consensus 306 ---~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~-~~-V~~l~~s~~g~~lasGs~d----G~V~vwD~~ 376 (826)
.|..|++.+..... . +.+.... .- ...+..++++++|++.+.. ..|.+.|+.
T Consensus 200 ~~~~v~~~~~gt~~~~d--------------~-----lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSED--------------E-----LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp CCEEEEEEETTS-GGG---------------E-----EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred CCcEEEEEECCCChHhC--------------e-----eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 25666665432210 0 2222222 22 5678889999988765433 347888887
Q ss_pred CC
Q 003360 377 GP 378 (826)
Q Consensus 377 ~~ 378 (826)
.+
T Consensus 261 ~~ 262 (414)
T PF02897_consen 261 DG 262 (414)
T ss_dssp CT
T ss_pred cc
Confidence 64
No 469
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=35.80 E-value=1.6e+02 Score=36.08 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCC-----eeEEEEeecc----------cCCCCCcEEEEEECCCcEE
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSG-----IVSLQFETCS----------LQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~-----V~sl~f~~~~----------~~~~d~~~l~sgs~Dg~V~ 422 (826)
+..|.+++.++.|.-+|..+++.+.+.......... -..+.+.... .+......++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457888888899999999999998766543221110 1122222100 0011255889999999999
Q ss_pred EEECCCCceEEee
Q 003360 423 VLDSDNGNMLSTN 435 (826)
Q Consensus 423 iwd~~tg~~i~~~ 435 (826)
-+|..||+.+-.+
T Consensus 274 ALDA~TGk~~W~f 286 (764)
T TIGR03074 274 ALDADTGKLCEDF 286 (764)
T ss_pred EEECCCCCEEEEe
Confidence 9999999988665
No 470
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=35.33 E-value=4.7e+02 Score=26.97 Aligned_cols=90 Identities=11% Similarity=0.119 Sum_probs=53.3
Q ss_pred eCCCCC-EEEEEECCCcEEEEeC--CCCc---eeeeeeccccc-ccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003360 239 HSKVKN-LFITGHSDGAINFWDV--SCPL---FLLILSLKQQS-EKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFK 311 (826)
Q Consensus 239 ~s~~~~-~l~Tgs~DGtVriWD~--s~~~---~~~i~~l~~~~-~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd 311 (826)
|+.+.+ ++.+-+.+-+|.-||. .+.. ...++.++... ...... -.++...+|.+.++.-..|+|..+|
T Consensus 165 Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~P-----DGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 165 WDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEP-----DGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCC-----CcceEccCCcEEEEEecCcEEEEEC
Confidence 665554 6677888899999995 2222 12345554321 111111 1233455777777777788888888
Q ss_pred eCCCCCccccceEEEeecCCCCeEEEEEEEEeec-cCCeEEEEEc
Q 003360 312 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-NGSIISLNMN 355 (826)
Q Consensus 312 ~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-~~~V~~l~~s 355 (826)
..++.. +..... ..+|+|.+|-
T Consensus 240 p~tGK~----------------------L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 240 PTTGKI----------------------LLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCCcE----------------------EEEEEcCCCceEEEEec
Confidence 875543 333333 4569999995
No 471
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=34.95 E-value=6.2e+02 Score=27.45 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=21.7
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFK 311 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd 311 (826)
..+.|+|.|++++|++ ...|.|++++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 4579999999887664 5699999999
No 472
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.21 E-value=9.5e+02 Score=29.07 Aligned_cols=148 Identities=11% Similarity=0.125 Sum_probs=76.5
Q ss_pred CCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEecc
Q 003360 141 NKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAK 220 (826)
Q Consensus 141 ~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~ 220 (826)
+..++..++++..+|.+++|+...-.. +. +.+-.+...+.|..+.|+.+|-.+++.++..+.+.+.
T Consensus 90 gWs~~eeLI~v~k~g~v~Vy~~~ge~i---e~-----------~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~ 155 (829)
T KOG2280|consen 90 GWSDDEELICVQKDGTVHVYGLLGEFI---ES-----------NSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGV 155 (829)
T ss_pred cccCCceEEEEeccceEEEeecchhhh---cc-----------cccccccccCceeEEEEecCceEEEecCCcEEEEcCC
Confidence 445667899999999999998765210 00 0111233445677777777776666665555555544
Q ss_pred CCCceeeccc-cc---CCccee-eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccC-----CCCeEEEE
Q 003360 221 SVPPLLDFET-KL---KDGSQS-HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLS-----GIPLTALY 290 (826)
Q Consensus 221 ~~~~~~~~~~-~h---~g~V~~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h-----~~~V~~l~ 290 (826)
..+....+.. |. ....+. +.+..+... +-|+.-....+++... ......| ...+..+.
T Consensus 156 ~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~---------ll~v~~~v~~~~~q~~---~~~~q~~~~~~~~~~~~ki~ 223 (829)
T KOG2280|consen 156 EEPKLRKMPDIPYNELPKSCWTVFQPHRQSTI---------LLDVDVAVGLHICQVE---ESRVQLHALSWPNSSVVKIS 223 (829)
T ss_pred CcchhhhCCCCCCccCCCcceeEecCCCccee---------EEeechhhhhccccee---cccccccccCCCCceEEEEE
Confidence 4434433311 10 111122 333322111 1111000000011111 1111112 25788899
Q ss_pred EeCCCCEEEEEeCCCcEEEEEeCC
Q 003360 291 YDGTSRVLVSGDQSGMVRIFKLKY 314 (826)
Q Consensus 291 fsp~~~~Lasgs~dg~V~iwd~~~ 314 (826)
.+|+.++||-=..+|.|.+-....
T Consensus 224 VS~n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 224 VSPNRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred EcCCcceEEEEecCCcEEEEecch
Confidence 999999999999999887776553
No 473
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=32.49 E-value=94 Score=20.26 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=20.1
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEe
Q 003360 348 SIISLNMNRNSQHLAVGSDQGYVYLLD 374 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~dG~V~vwD 374 (826)
.|.+++..+. +++++..-+.+|+|.
T Consensus 3 ~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCC--EEEEEeCCCeEEecC
Confidence 4777887755 799999999999873
No 474
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=32.07 E-value=70 Score=27.25 Aligned_cols=49 Identities=24% Similarity=0.237 Sum_probs=43.1
Q ss_pred hHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHhhcc
Q 003360 775 SVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHDK 823 (826)
Q Consensus 775 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k 823 (826)
......++.+.++.+|+-+=.+|.++|.+.|++.+..|...-++.++=|
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~ 58 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLK 58 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566789999999999999999999999999999999999988776543
No 475
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=31.82 E-value=5.8 Score=44.17 Aligned_cols=146 Identities=10% Similarity=0.211 Sum_probs=93.4
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEeCCCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS-GDQSGMVRIFKLKYEPH 317 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las-gs~dg~V~iwd~~~~~~ 317 (826)
|.+.+.-++.++.+..|..||-.+... ..+. .....-.++|..++..+++ +-..+.+.+||+.++..
T Consensus 42 w~~e~~nlavaca~tiv~~YD~agq~~---le~n---------~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDKAGQVI---LELN---------PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred EecCCCceehhhhhhHHHhhhhhccee---cccC---------CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 677666688889999999999755542 1111 1134456777777765554 55678999999985521
Q ss_pred ccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEE
Q 003360 318 AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSL 397 (826)
Q Consensus 318 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl 397 (826)
. + +.++... .-.-+.|++.+..++.|...|.+.|++......+.. ...|...++++
T Consensus 110 q---------------q-----LE~gg~~-s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv---~Gkh~RRgtq~ 165 (615)
T KOG2247|consen 110 Q---------------Q-----LESGGTS-SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV---MGKHQRRGTQI 165 (615)
T ss_pred H---------------H-----HhccCcc-hHHHHhhccCCccccccccccceEEEeccchhhhhh---hcccccceeEE
Confidence 0 0 1111101 111167899888999999999999999876554411 12377788999
Q ss_pred EEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 398 QFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 398 ~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++.+ .++.+.++-|..+.+-...
T Consensus 166 av~l-------Ed~vil~dcd~~L~v~~qe 188 (615)
T KOG2247|consen 166 AVTL-------EDYVILCDCDNTLSVTTQE 188 (615)
T ss_pred Eecc-------cceeeecCcHHHHHHhhhc
Confidence 9987 5566666666655444433
No 476
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.42 E-value=4.4e+02 Score=29.80 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=37.9
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE--EeeecccCCCCCeeEEEEee
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL--YQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l--~~~~~~~~~~~~V~sl~f~~ 401 (826)
.|+|.++.||+|.+.+|+--.+.+|-+++...-... +...+ ...+..|....|..
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF~W~~ 122 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGFCWTS 122 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh-ccCcceeEEEEEec
Confidence 678999999999999999999999999988432221 11111 12233466667765
No 477
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=30.05 E-value=6e+02 Score=29.18 Aligned_cols=102 Identities=12% Similarity=0.133 Sum_probs=57.0
Q ss_pred EEEEecCCeEEEEecCCCe-eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccC
Q 003360 361 LAVGSDQGYVYLLDTEGPT-VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHP 439 (826)
Q Consensus 361 lasGs~dG~V~vwD~~~~~-~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~ 439 (826)
-++|-.+..|.-+|.+-.. .+. . ......++.-.|+.. ....+.++++++.-|-|++||.- |..-.+ ..|
T Consensus 530 tlvGlS~~svFrIDPR~~gNKi~-v---~esKdY~tKn~Fss~--~tTesGyIa~as~kGDirLyDRi-g~rAKt--alP 600 (776)
T COG5167 530 TLVGLSDYSVFRIDPRARGNKIK-V---VESKDYKTKNKFSSG--MTTESGYIAAASRKGDIRLYDRI-GKRAKT--ALP 600 (776)
T ss_pred eEEeecccceEEecccccCCcee-e---eeehhcccccccccc--ccccCceEEEecCCCceeeehhh-cchhhh--cCc
Confidence 3456666667677765322 110 1 122233444555543 22247899999999999999965 433222 111
Q ss_pred CCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 440 KKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 440 ~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
.... .+-.++ .+.++.++++.|...+-+.+++
T Consensus 601 ~lG~---aIk~id-------------------------vta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 601 GLGD---AIKHID-------------------------VTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cccc---ceeeeE-------------------------eecCCcEEEEeecceEEEEecc
Confidence 1111 111221 2234568889999999999887
No 478
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=29.69 E-value=8.7e+02 Score=27.55 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=32.1
Q ss_pred CCceEEEEEEeeceEEEeccCCc---cccccccccceeec--CCCCC----CCcccceeccCCCcEEEEcCCeeeeeeee
Q 003360 528 GSDVGLMLLFTSGKFEIRSLPEL---SLLKETSIRGFVYL--TPKPN----SLSNTLMCSSWDGELIMVNGNQEAFFISA 598 (826)
Q Consensus 528 ~~~~~lv~~~~~G~I~i~slP~L---~~l~~~sl~~~~~~--~~~~~----~~~~~~~~~s~~G~i~~~~g~~e~~~~~~ 598 (826)
..-...+..|..|+|+-+.+.+- +++.+..|-+.... +|..+ .++-..+..|.||.-+|++. .+++.
T Consensus 322 DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn----SLys~ 397 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN----SLYSA 397 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--------HH
T ss_pred CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe----ecccc
Confidence 33344466778999999988763 22333323222111 01111 12336778899999999988 56666
Q ss_pred c
Q 003360 599 L 599 (826)
Q Consensus 599 ~ 599 (826)
|
T Consensus 398 W 398 (461)
T PF05694_consen 398 W 398 (461)
T ss_dssp H
T ss_pred c
Confidence 6
No 479
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=29.14 E-value=80 Score=22.12 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=16.3
Q ss_pred CcEEEEEECCCcEEEEECCC
Q 003360 409 KNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~iwd~~t 428 (826)
+..+++++.||.++.+|.+|
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 67899999999999999864
No 480
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=28.63 E-value=2.3e+02 Score=27.49 Aligned_cols=30 Identities=23% Similarity=0.301 Sum_probs=24.8
Q ss_pred CeEEEEEccCCC------EEEEEecCCeEEEEecCC
Q 003360 348 SIISLNMNRNSQ------HLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 348 ~V~~l~~s~~g~------~lasGs~dG~V~vwD~~~ 377 (826)
.|.+++|||.|- .||+-+.+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 699999999652 688889999999998654
No 481
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=28.46 E-value=94 Score=24.69 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=36.2
Q ss_pred hHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHhhcc
Q 003360 775 SVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHDK 823 (826)
Q Consensus 775 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k 823 (826)
..+.-+...|.+-.|.|+++..+..++.+. -..++.++++|+.||
T Consensus 22 ~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~----l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 22 EIGAATLEDLRSQREQLKRVRDKLDDIDSN----LPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHccC
Confidence 455667889999999999999998887765 467899999998875
No 482
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=27.99 E-value=2.5e+02 Score=31.22 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=39.2
Q ss_pred EEccCCCEEEEEec---CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 353 NMNRNSQHLAVGSD---QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 353 ~~s~~g~~lasGs~---dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
+|.++|+.|+.+++ ...+.+.|+.++++..-.. +.....-....++ ++..++-.-....|+-.|+.|.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd---g~g~~~~g~~~s~------~~~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD---GPGDNTFGGFLSP------DDRALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE------SS-B-TTT-EE-T------TSSEEEEEETTTEEEEEETTT-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc---CCCCCccceEEec------CCCeEEEEECCCeEEEEECCcC
Confidence 57889987777665 4568888999998874332 2111111233334 3666665656678999999988
Q ss_pred ceEEee
Q 003360 430 NMLSTN 435 (826)
Q Consensus 430 ~~i~~~ 435 (826)
+....+
T Consensus 113 e~~~vy 118 (386)
T PF14583_consen 113 EERVVY 118 (386)
T ss_dssp -EEEEE
T ss_pred cEEEEE
Confidence 755444
No 483
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=27.05 E-value=8.2e+02 Score=26.36 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=28.7
Q ss_pred CCCEEEEEecCCeEEEEecCCCeeEEeeecccCC---CCCeeEEEEeec
Q 003360 357 NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI---SSGIVSLQFETC 402 (826)
Q Consensus 357 ~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~---~~~V~sl~f~~~ 402 (826)
.|.+|+--.-||+|.++|..+++.+-.+.-..++ ....+.|.|..-
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng 308 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNG 308 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCC
Confidence 4555665567999999999888766322211111 134567788763
No 484
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=26.72 E-value=8.1e+02 Score=26.21 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=15.4
Q ss_pred cCCCEEEEEecCCe----EEEEecCCCee
Q 003360 356 RNSQHLAVGSDQGY----VYLLDTEGPTV 380 (826)
Q Consensus 356 ~~g~~lasGs~dG~----V~vwD~~~~~~ 380 (826)
.++.+.+.|+.++. +.+||+.+.+-
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCCee
Confidence 34567777776543 45778776553
No 485
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=26.57 E-value=3.1e+02 Score=33.57 Aligned_cols=135 Identities=10% Similarity=0.038 Sum_probs=66.3
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEecCCC-----------e-eE---------EeeecccCCCCCeeEEEEeecccC
Q 003360 347 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP-----------T-VL---------YQKHIASDISSGIVSLQFETCSLQ 405 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~-----------~-~l---------~~~~~~~~~~~~V~sl~f~~~~~~ 405 (826)
-.|.|+.-+.+|+.+.+|-.| +.||.+.-. + |+ -+.-...-+...|+.++....
T Consensus 182 inV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqs--- 256 (1263)
T COG5308 182 INVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQS--- 256 (1263)
T ss_pred ceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeeccc---
Confidence 358888888889877777666 677765210 0 00 000001123345555555542
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCC-CCcccCcc--ccccccccCCCCCCCCCCCC
Q 003360 406 GFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQ-DGLARGAN--LSNVAGMNKGSPKENAVPKQ 482 (826)
Q Consensus 406 ~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 482 (826)
...|.+-+.-..|+.|.+.....+... .++...++.. ..+.+.+. .+.+.+.....+++.....+
T Consensus 257 ---Rg~ly~Lr~kS~Vray~itkngl~gpv---------~i~~a~i~r~a~~lna~sPlL~pr~~kIvkIvsi~~~Enn~ 324 (1263)
T COG5308 257 ---RGLLYVLRKKSAVRAYSITKNGLVGPV---------FISFASIDRNAAILNATSPLLEPRMYKIVKIVSIPAYENNQ 324 (1263)
T ss_pred ---ccceeeecccceeeeEeeecccccccc---------cccHHHHHhHHhhhccCCcccCCceEEEEEEeecccccccc
Confidence 556667777777777766533322210 0000111110 00000000 12223334455555555566
Q ss_pred CEEEEeecCcEEEEec
Q 003360 483 WFVLLCSEKAACAYSL 498 (826)
Q Consensus 483 ~~vv~~se~~irv~sl 498 (826)
.|+++-+...+|+|=-
T Consensus 325 lflvaiT~tgcRlYf~ 340 (1263)
T COG5308 325 LFLVAITSTGCRLYFD 340 (1263)
T ss_pred eEEEEEeccceEEEEe
Confidence 7888877788888743
No 486
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.50 E-value=1.3e+03 Score=28.68 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=20.7
Q ss_pred CCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 408 EKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 408 d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+.+++++-. ++.|-||+..++.++++.
T Consensus 250 ~~PYlIa~~-~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 250 ESPYLIALL-DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred cCceEEEEc-cccEEEEeccCHHHhhcc
Confidence 366777665 459999999999888774
No 487
>PHA02790 Kelch-like protein; Provisional
Probab=25.90 E-value=1e+03 Score=27.24 Aligned_cols=63 Identities=8% Similarity=0.066 Sum_probs=32.9
Q ss_pred CCCCEEEEEECCC-----cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEeC
Q 003360 241 KVKNLFITGHSDG-----AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG--MVRIFKLK 313 (826)
Q Consensus 241 ~~~~~l~Tgs~DG-----tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg--~V~iwd~~ 313 (826)
.++.++++|+.++ ++..||........+..+.. .......+ .-++.+.++|+.++ .|..||..
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~--------~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~ 339 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS--------PRLYASGV--PANNKLYVVGGLPNPTSVERWFHG 339 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc--------hhhcceEE--EECCEEEEECCcCCCCceEEEECC
Confidence 3456778887653 46678875555433222220 11111122 23677778887643 46667654
No 488
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=25.26 E-value=9.4e+02 Score=26.44 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=11.8
Q ss_pred CeEEEEEccCCCEEEE
Q 003360 348 SIISLNMNRNSQHLAV 363 (826)
Q Consensus 348 ~V~~l~~s~~g~~las 363 (826)
....++|.|+|.+.++
T Consensus 125 ~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFN 140 (367)
T ss_pred cccCceECCCCCEEEe
Confidence 3678999999875443
No 489
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=23.42 E-value=1.2e+02 Score=35.80 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.3
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCc
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPL 264 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~ 264 (826)
.+|.|+-++.||.||+|++++...+.
T Consensus 22 shp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 22 SHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ecCCCceEEEEecCCcEEEEeecccc
Confidence 57888999999999999999995444
No 490
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=22.39 E-value=1.2e+02 Score=31.37 Aligned_cols=44 Identities=18% Similarity=0.159 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003360 779 MAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHD 822 (826)
Q Consensus 779 ~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~ 822 (826)
+|=.+|.+.-+||=+++--|++|...||..-...+||++++++.
T Consensus 184 ~AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie~~~~el~e~~~~~ 227 (238)
T TIGR00161 184 RAAASLVEVLNKMLNTNVDPEPLLKEAEAIESRLKKLAEQVQGM 227 (238)
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34446778889999999999999999999999999999988663
No 491
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=22.10 E-value=1.8e+02 Score=18.70 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=12.3
Q ss_pred EEEEEccCCCEEEEEecCCeEEE
Q 003360 350 ISLNMNRNSQHLAVGSDQGYVYL 372 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~dG~V~v 372 (826)
..|+++++|.++++=+....|.+
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 45666666655554444454443
No 492
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=21.25 E-value=1.3e+03 Score=26.60 Aligned_cols=111 Identities=22% Similarity=0.209 Sum_probs=55.7
Q ss_pred eCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec-cCCeEEEEEccCC-CEEEEEecCC-
Q 003360 292 DGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-NGSIISLNMNRNS-QHLAVGSDQG- 368 (826)
Q Consensus 292 sp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-~~~V~~l~~s~~g-~~lasGs~dG- 368 (826)
..+...++.+.++|.+....+..... ... +..... ....+++++-.+| .+|++|+.-|
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~----------------~i~---i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gd 279 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGG----------------SIS---ITYLGTLCSIASSLTYLKNGGDYLFVGSEFGD 279 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEE----------------EEE---EEEEEE--S-ESEEEEESTT--EEEEEESSS-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCC----------------eEE---EEEcCCcCChhheEEEEcCCCEEEEEEEecCC
Confidence 34567888899999988877762110 101 111111 3345666666555 4677777644
Q ss_pred -eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCC----CcEEEEEE---CCCcEEEEE
Q 003360 369 -YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFE----KNFLVIAT---KDSSVLVLD 425 (826)
Q Consensus 369 -~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d----~~~l~sgs---~Dg~V~iwd 425 (826)
.+.-|......++... ..-+||..++.......+.. ...|++++ .+|.++++.
T Consensus 280 s~l~~~~~~~l~~~~~~----~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 280 SQLLQISLSNLEVLDSL----PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp EEEEEEESESEEEEEEE--------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred cEEEEEeCCCcEEEEec----cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 4444553333444222 23468888888754222111 01566665 466777774
No 493
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=20.85 E-value=1.1e+03 Score=25.78 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=13.9
Q ss_pred CeEEEEEeCCCCEEEEE
Q 003360 285 PLTALYYDGTSRVLVSG 301 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasg 301 (826)
....|+|.++++++++-
T Consensus 15 ~P~~ia~d~~G~l~V~e 31 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAE 31 (367)
T ss_pred CCceeeECCCCCEEEEe
Confidence 56789999999987765
No 494
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=20.77 E-value=46 Score=38.77 Aligned_cols=81 Identities=22% Similarity=0.282 Sum_probs=51.3
Q ss_pred ccccCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc
Q 003360 278 DFSLSGIPLTALYYDGTSRVLVSGDQSG-MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR 356 (826)
Q Consensus 278 ~~~~h~~~V~~l~fsp~~~~Lasgs~dg-~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~ 356 (826)
+|..|..++..++|.+.+..+++++..| .|.++++....+.....-.+...++ .......|..++|+.
T Consensus 310 QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~-----------ra~t~aviqdicfs~ 378 (788)
T KOG2109|consen 310 QFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSP-----------RANTAAVIQDICFSE 378 (788)
T ss_pred heeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccch-----------hcchHHHHHHHhhhh
Confidence 4667889999999999999999998887 4666666533221100000000000 011123367788998
Q ss_pred CCCEEEEEecCCe
Q 003360 357 NSQHLAVGSDQGY 369 (826)
Q Consensus 357 ~g~~lasGs~dG~ 369 (826)
..++.+.|+.+|.
T Consensus 379 ~s~~r~~gsc~Ge 391 (788)
T KOG2109|consen 379 VSTIRTAGSCEGE 391 (788)
T ss_pred hcceEeecccCCC
Confidence 8888999888875
No 495
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=20.48 E-value=1.7e+03 Score=28.28 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=59.7
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCC
Q 003360 289 LYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG 368 (826)
Q Consensus 289 l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG 368 (826)
.+.+|....+.+| ....+++|++....... .+. .+. ....|+.+++. +.++++|...-
T Consensus 939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLR--------------k~e---~k~--~p~~Is~iqt~--~~RI~VgD~qe 996 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLR--------------KCE---LKF--IPNRISSIQTY--GARIVVGDIQE 996 (1205)
T ss_pred eEEeccCCEEEEe-cccEEEEeeCChHHHHh--------------hhh---hcc--CceEEEEEeec--ceEEEEeeccc
Confidence 4567877766665 44579999997542210 000 111 13347777765 55788888766
Q ss_pred eEEEEecC--CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 369 YVYLLDTE--GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 369 ~V~vwD~~--~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
.|.++-.+ ..+++ .-..+.....|+.+.+.. -..++.+..-|.+.+.-+
T Consensus 997 SV~~~~y~~~~n~l~--~fadD~~pR~Vt~~~~lD-------~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 997 SVHFVRYRREDNQLI--VFADDPVPRHVTALELLD-------YDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred eEEEEEEecCCCeEE--EEeCCCccceeeEEEEec-------CCceeeccccCcEEEEEC
Confidence 66655443 33333 222233445677766654 455666666565555443
No 496
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=20.01 E-value=1.2e+02 Score=26.79 Aligned_cols=42 Identities=14% Similarity=0.312 Sum_probs=29.0
Q ss_pred chHHHHHhhCCCCCCcchHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHH
Q 003360 758 AVDQIKKKYGFSHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFS 809 (826)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~ 809 (826)
..+++|+|.. ++.+++|++|.+++ ..+-+||.++..-|++|-
T Consensus 38 e~~~lR~r~~-------~~Lk~~r~rl~~~~---d~v~~~sk~a~~~tD~yV 79 (104)
T COG4575 38 EAEELRSKAE-------SALKEARDRLGDTG---DAVVQRSKAAADATDDYV 79 (104)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHH
Confidence 3556666643 67777777776666 445688888888888873
Done!