Query 003360
Match_columns 826
No_of_seqs 643 out of 3821
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 22:37:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oaj_A Protein SNI1; WD40 repe 100.0 9E-50 3.1E-54 491.8 51.2 603 13-680 211-882 (902)
2 2ymu_A WD-40 repeat protein; u 100.0 2.1E-33 7.3E-38 328.9 58.1 466 3-588 47-577 (577)
3 1nr0_A Actin interacting prote 100.0 8.6E-34 2.9E-38 335.9 54.6 454 5-548 51-610 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 1.6E-32 5.6E-37 321.4 55.3 481 6-592 9-540 (577)
5 1nr0_A Actin interacting prote 100.0 5.9E-33 2E-37 328.7 51.4 469 11-589 16-609 (611)
6 2ynn_A Coatomer subunit beta'; 100.0 6.1E-31 2.1E-35 283.1 39.2 243 189-499 52-301 (304)
7 1got_B GT-beta; complex (GTP-b 100.0 4.1E-31 1.4E-35 289.2 37.1 286 7-425 49-340 (340)
8 1vyh_C Platelet-activating fac 100.0 2E-31 6.8E-36 299.7 34.8 284 9-427 104-410 (410)
9 3ow8_A WD repeat-containing pr 100.0 2.7E-31 9.3E-36 288.4 33.8 291 5-427 24-320 (321)
10 4g56_B MGC81050 protein; prote 100.0 4E-31 1.4E-35 291.6 34.8 294 10-429 39-344 (357)
11 3sfz_A APAF-1, apoptotic pepti 100.0 8.4E-30 2.9E-34 325.9 50.0 465 10-588 612-1155(1249)
12 4gqb_B Methylosome protein 50; 100.0 9.5E-31 3.2E-35 287.0 34.8 232 147-429 95-332 (344)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-30 3.9E-35 286.4 34.4 321 6-434 8-341 (345)
14 2pbi_B Guanine nucleotide-bind 100.0 3.2E-30 1.1E-34 283.9 35.9 292 7-425 58-354 (354)
15 2oaj_A Protein SNI1; WD40 repe 100.0 7.4E-29 2.5E-33 305.5 51.5 502 11-589 15-781 (902)
16 3iz6_a 40S ribosomal protein R 100.0 8.1E-31 2.8E-35 291.5 28.5 306 7-430 60-377 (380)
17 3frx_A Guanine nucleotide-bind 100.0 1E-29 3.5E-34 275.5 33.0 295 6-429 10-318 (319)
18 1erj_A Transcriptional repress 100.0 1E-28 3.6E-33 275.8 38.7 249 146-427 136-388 (393)
19 1pgu_A Actin interacting prote 100.0 3.1E-27 1.1E-31 278.0 52.7 481 11-589 16-612 (615)
20 2xzm_R RACK1; ribosome, transl 100.0 3.6E-29 1.2E-33 274.0 33.6 298 6-429 14-341 (343)
21 2ynn_A Coatomer subunit beta'; 100.0 1.3E-28 4.4E-33 264.9 37.2 285 185-542 6-296 (304)
22 1pgu_A Actin interacting prote 100.0 1.1E-27 3.6E-32 282.0 48.4 460 5-548 55-613 (615)
23 2hes_X YDR267CP; beta-propelle 100.0 8.9E-29 3E-33 269.5 36.3 311 5-428 6-328 (330)
24 1vyh_C Platelet-activating fac 100.0 1.3E-28 4.5E-33 276.7 37.7 290 186-547 102-409 (410)
25 3sfz_A APAF-1, apoptotic pepti 100.0 3.4E-28 1.1E-32 311.1 46.0 486 6-589 650-1197(1249)
26 4ery_A WD repeat-containing pr 100.0 3.8E-28 1.3E-32 261.5 38.9 242 189-499 62-311 (312)
27 4aow_A Guanine nucleotide-bind 100.0 3.1E-28 1.1E-32 264.1 35.2 295 7-430 32-339 (340)
28 4ery_A WD repeat-containing pr 100.0 1.5E-27 5.2E-32 256.8 40.3 291 183-547 14-310 (312)
29 3ow8_A WD repeat-containing pr 100.0 5E-28 1.7E-32 262.6 36.7 284 187-548 27-320 (321)
30 1got_B GT-beta; complex (GTP-b 100.0 1.5E-27 5E-32 260.9 37.3 288 184-546 47-340 (340)
31 4e54_B DNA damage-binding prot 100.0 2.3E-28 8E-33 276.7 30.9 247 189-499 161-429 (435)
32 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.8E-27 6.3E-32 260.8 35.2 320 186-555 9-341 (345)
33 3frx_A Guanine nucleotide-bind 100.0 4.9E-27 1.7E-31 254.4 38.1 285 185-548 10-316 (319)
34 3mkq_A Coatomer beta'-subunit; 100.0 1.9E-26 6.5E-31 281.3 47.5 430 4-588 4-486 (814)
35 1r5m_A SIR4-interacting protei 100.0 2.9E-27 1E-31 264.1 36.6 330 12-427 44-424 (425)
36 1gxr_A ESG1, transducin-like e 100.0 3.7E-27 1.3E-31 254.8 35.5 324 11-426 7-335 (337)
37 2pbi_B Guanine nucleotide-bind 100.0 1.4E-26 4.7E-31 254.8 38.7 294 183-546 55-354 (354)
38 4g56_B MGC81050 protein; prote 100.0 2.2E-27 7.4E-32 261.6 31.7 244 188-500 90-343 (357)
39 4gqb_B Methylosome protein 50; 100.0 5.2E-27 1.8E-31 257.2 34.4 287 190-549 28-331 (344)
40 1k8k_C P40, ARP2/3 complex 41 100.0 2.7E-27 9.1E-32 260.2 32.1 302 11-430 6-363 (372)
41 3ei3_B DNA damage-binding prot 100.0 3E-27 1E-31 262.0 32.7 244 190-499 116-381 (383)
42 3dm0_A Maltose-binding peripla 100.0 3E-27 1E-31 283.9 35.0 292 8-427 377-692 (694)
43 3vl1_A 26S proteasome regulato 100.0 9.7E-27 3.3E-31 260.8 36.1 235 147-429 111-366 (420)
44 4h5i_A Guanine nucleotide-exch 100.0 1E-27 3.5E-32 265.2 27.6 205 190-429 131-344 (365)
45 2pm7_B Protein transport prote 100.0 8.4E-27 2.9E-31 249.8 33.0 208 188-427 49-284 (297)
46 1sq9_A Antiviral protein SKI8; 100.0 1.1E-26 3.8E-31 258.1 34.7 320 7-430 10-397 (397)
47 3k26_A Polycomb protein EED; W 100.0 5.6E-27 1.9E-31 256.5 30.4 313 11-427 16-365 (366)
48 1erj_A Transcriptional repress 100.0 3.8E-26 1.3E-30 255.0 37.4 286 190-550 62-390 (393)
49 2pm9_A Protein WEB1, protein t 100.0 2.5E-27 8.7E-32 264.8 27.5 343 12-429 11-415 (416)
50 3zwl_B Eukaryotic translation 100.0 3.6E-26 1.2E-30 250.0 35.9 286 9-432 28-350 (369)
51 2xzm_R RACK1; ribosome, transl 100.0 5.2E-26 1.8E-30 248.8 37.1 286 185-549 14-340 (343)
52 2hes_X YDR267CP; beta-propelle 100.0 8.6E-26 2.9E-30 245.9 38.6 302 185-548 7-327 (330)
53 3iz6_a 40S ribosomal protein R 100.0 4.7E-27 1.6E-31 261.1 28.1 305 185-552 59-378 (380)
54 4e54_B DNA damage-binding prot 100.0 5.2E-27 1.8E-31 265.6 28.9 218 187-440 114-339 (435)
55 3i2n_A WD repeat-containing pr 100.0 6.3E-27 2.1E-31 255.4 28.0 236 146-431 81-356 (357)
56 3odt_A Protein DOA1; ubiquitin 100.0 4.8E-26 1.6E-30 243.5 33.7 290 4-434 9-302 (313)
57 3v7d_B Cell division control p 100.0 4.9E-25 1.7E-29 250.8 40.8 240 148-450 176-441 (464)
58 3vl1_A 26S proteasome regulato 99.9 3.9E-26 1.3E-30 255.9 29.9 254 145-439 68-334 (420)
59 3dw8_B Serine/threonine-protei 99.9 1.8E-25 6.3E-30 252.4 35.3 284 192-499 93-445 (447)
60 3jrp_A Fusion protein of prote 99.9 9.4E-26 3.2E-30 248.0 31.6 213 189-432 52-291 (379)
61 3dwl_C Actin-related protein 2 99.9 2.2E-26 7.5E-31 254.2 26.0 304 12-426 10-377 (377)
62 2pm7_B Protein transport prote 99.9 2.9E-25 9.9E-30 237.8 33.8 213 187-430 4-240 (297)
63 1k8k_C P40, ARP2/3 complex 41 99.9 2.4E-25 8.2E-30 244.5 33.8 247 188-500 4-274 (372)
64 4aez_A CDC20, WD repeat-contai 99.9 4.4E-25 1.5E-29 246.8 36.4 231 147-435 148-387 (401)
65 3bg1_A Protein SEC13 homolog; 99.9 1.6E-26 5.5E-31 250.0 23.7 206 189-427 54-292 (316)
66 3dm0_A Maltose-binding peripla 99.9 2.3E-25 7.9E-30 267.6 36.2 289 186-548 376-692 (694)
67 1gxr_A ESG1, transducin-like e 99.9 2.4E-24 8.2E-29 232.6 39.5 234 146-434 64-302 (337)
68 2ovr_B FBW7, F-BOX/WD repeat p 99.9 2E-24 6.7E-29 244.8 40.0 227 147-435 171-398 (445)
69 4a11_B DNA excision repair pro 99.9 1.5E-24 5E-29 240.9 37.3 319 7-434 37-371 (408)
70 3ei3_B DNA damage-binding prot 99.9 8.6E-25 2.9E-29 242.2 35.3 301 185-548 66-381 (383)
71 3mkq_A Coatomer beta'-subunit; 99.9 3.7E-24 1.3E-28 261.1 44.1 238 145-438 25-269 (814)
72 3f3f_A Nucleoporin SEH1; struc 99.9 9E-25 3.1E-29 236.1 33.2 220 189-434 54-343 (351)
73 3zwl_B Eukaryotic translation 99.9 1.3E-23 4.4E-28 229.7 42.4 305 181-554 21-351 (369)
74 4aow_A Guanine nucleotide-bind 99.9 2.2E-24 7.7E-29 233.6 35.0 287 185-550 31-338 (340)
75 3gre_A Serine/threonine-protei 99.9 2.3E-25 7.8E-30 251.5 27.8 329 4-425 53-437 (437)
76 4ggc_A P55CDC, cell division c 99.9 4.5E-24 1.5E-28 228.9 36.1 226 148-429 82-316 (318)
77 4gga_A P55CDC, cell division c 99.9 2.3E-24 8E-29 242.5 34.6 284 16-433 108-400 (420)
78 1r5m_A SIR4-interacting protei 99.9 5.3E-24 1.8E-28 237.6 37.1 330 147-548 60-424 (425)
79 3gre_A Serine/threonine-protei 99.9 3.3E-24 1.1E-28 242.0 35.0 229 185-440 55-304 (437)
80 3v7d_B Cell division control p 99.9 2.5E-23 8.6E-28 236.6 41.4 270 146-499 133-420 (464)
81 3dwl_C Actin-related protein 2 99.9 4.3E-25 1.5E-29 243.7 25.5 245 188-499 7-280 (377)
82 4a11_B DNA excision repair pro 99.9 1.4E-23 4.9E-28 232.9 37.6 300 185-555 36-371 (408)
83 1yfq_A Cell cycle arrest prote 99.9 5.6E-24 1.9E-28 230.9 32.7 285 10-425 8-321 (342)
84 3odt_A Protein DOA1; ubiquitin 99.9 7.8E-23 2.7E-27 218.5 39.7 289 183-555 9-302 (313)
85 3bg1_A Protein SEC13 homolog; 99.9 1.1E-24 3.9E-29 235.5 24.3 213 187-428 8-247 (316)
86 1sq9_A Antiviral protein SKI8; 99.9 8.6E-24 2.9E-28 234.7 31.2 245 146-436 27-330 (397)
87 3jrp_A Fusion protein of prote 99.9 1.6E-23 5.5E-28 230.1 31.9 211 187-430 6-242 (379)
88 2pm9_A Protein WEB1, protein t 99.9 3.1E-24 1E-28 239.7 26.4 299 193-554 13-342 (416)
89 3k26_A Polycomb protein EED; W 99.9 1.1E-23 3.8E-28 230.2 27.3 260 145-432 34-322 (366)
90 3i2n_A WD repeat-containing pr 99.9 3.9E-23 1.3E-27 225.3 31.4 303 185-553 11-357 (357)
91 1p22_A F-BOX/WD-repeat protein 99.9 1.8E-23 6.1E-28 236.4 29.5 223 147-434 185-420 (435)
92 2ovr_B FBW7, F-BOX/WD repeat p 99.9 3.2E-22 1.1E-26 226.6 39.2 302 146-548 130-441 (445)
93 4aez_A CDC20, WD repeat-contai 99.9 1.7E-22 5.6E-27 225.9 36.2 293 186-555 85-386 (401)
94 4gga_A P55CDC, cell division c 99.9 1.3E-22 4.5E-27 228.2 34.5 270 148-499 118-394 (420)
95 3jro_A Fusion protein of prote 99.9 8E-24 2.7E-28 256.4 26.1 211 189-430 50-287 (753)
96 2j04_B YDR362CP, TAU91; beta p 99.9 6.9E-24 2.4E-28 245.0 22.6 229 147-427 279-516 (524)
97 2vdu_B TRNA (guanine-N(7)-)-me 99.9 5.9E-22 2E-26 225.0 36.5 216 188-437 98-353 (450)
98 2j04_B YDR362CP, TAU91; beta p 99.9 2.2E-23 7.5E-28 240.8 24.4 226 149-428 177-428 (524)
99 3mmy_A MRNA export factor; mRN 99.9 1E-22 3.5E-27 222.5 28.1 301 7-425 33-343 (368)
100 2xyi_A Probable histone-bindin 99.9 5.8E-22 2E-26 223.8 35.1 240 146-429 142-411 (430)
101 3f3f_A Nucleoporin SEH1; struc 99.9 7.2E-22 2.4E-26 213.2 34.0 228 188-431 7-252 (351)
102 3dw8_B Serine/threonine-protei 99.9 2E-22 6.8E-27 227.4 30.1 225 190-439 26-327 (447)
103 1yfq_A Cell cycle arrest prote 99.9 5.6E-22 1.9E-26 215.1 31.9 286 189-546 8-321 (342)
104 2aq5_A Coronin-1A; WD40 repeat 99.9 6.3E-23 2.1E-27 229.2 24.8 234 151-435 53-307 (402)
105 3vu4_A KMHSV2; beta-propeller 99.9 2.4E-22 8.2E-27 221.0 28.9 228 149-428 75-336 (355)
106 2aq5_A Coronin-1A; WD40 repeat 99.9 1.9E-22 6.5E-27 225.2 26.9 211 185-432 124-346 (402)
107 1p22_A F-BOX/WD-repeat protein 99.9 2E-21 6.7E-26 219.6 33.2 224 145-430 143-367 (435)
108 4ggc_A P55CDC, cell division c 99.9 3.4E-21 1.2E-25 206.4 33.2 270 148-499 38-314 (318)
109 3lrv_A PRE-mRNA-splicing facto 99.9 4.6E-22 1.6E-26 217.3 26.4 201 189-427 122-332 (343)
110 4h5i_A Guanine nucleotide-exch 99.9 3.4E-21 1.2E-25 212.7 32.7 290 192-549 14-343 (365)
111 2vdu_B TRNA (guanine-N(7)-)-me 99.9 4.4E-21 1.5E-25 217.8 34.1 211 193-437 5-280 (450)
112 3jro_A Fusion protein of prote 99.9 5.2E-22 1.8E-26 240.5 28.0 211 187-430 4-240 (753)
113 2j04_A TAU60, YPL007P, hypothe 99.9 8.3E-22 2.8E-26 223.3 26.6 303 192-590 15-350 (588)
114 3lrv_A PRE-mRNA-splicing facto 99.9 7.5E-22 2.6E-26 215.6 24.8 229 144-430 47-294 (343)
115 2j04_A TAU60, YPL007P, hypothe 99.9 9.5E-22 3.2E-26 222.8 25.9 198 190-427 83-296 (588)
116 2xyi_A Probable histone-bindin 99.9 7.1E-21 2.4E-25 214.9 30.8 213 185-428 121-353 (430)
117 4gq1_A NUP37; propeller, trans 99.9 1.1E-20 3.9E-25 210.6 28.1 261 190-499 87-388 (393)
118 3mmy_A MRNA export factor; mRN 99.9 1.2E-19 4E-24 198.1 32.2 217 185-439 32-261 (368)
119 1l0q_A Surface layer protein; 99.9 6.8E-19 2.3E-23 195.0 38.3 228 151-440 50-287 (391)
120 4gq1_A NUP37; propeller, trans 99.9 1.4E-20 4.7E-25 210.0 24.5 251 146-426 102-387 (393)
121 3bws_A Protein LP49; two-domai 99.9 9.8E-20 3.3E-24 204.7 30.9 281 13-427 122-431 (433)
122 3vu4_A KMHSV2; beta-propeller 99.9 1.1E-19 3.6E-24 199.9 29.8 218 188-430 15-273 (355)
123 2w18_A PALB2, fancn, partner a 99.9 1.1E-19 3.7E-24 194.0 28.2 185 189-426 153-355 (356)
124 2w18_A PALB2, fancn, partner a 99.8 7.7E-19 2.6E-23 187.5 29.6 287 123-498 34-355 (356)
125 3bws_A Protein LP49; two-domai 99.8 5.9E-18 2E-22 190.1 37.1 267 146-499 135-431 (433)
126 1l0q_A Surface layer protein; 99.8 6.6E-18 2.2E-22 187.0 36.0 229 147-437 4-242 (391)
127 1k32_A Tricorn protease; prote 99.8 1.7E-15 5.8E-20 190.1 44.6 193 194-430 246-463 (1045)
128 2hqs_A Protein TOLB; TOLB, PAL 99.8 9.2E-17 3.1E-21 180.4 28.9 217 155-435 159-393 (415)
129 1nir_A Nitrite reductase; hemo 99.7 6.5E-15 2.2E-19 171.0 34.8 340 23-436 146-522 (543)
130 1nir_A Nitrite reductase; hemo 99.7 4.7E-14 1.6E-18 163.8 40.4 327 145-555 149-520 (543)
131 2ecf_A Dipeptidyl peptidase IV 99.7 5.1E-15 1.8E-19 178.5 30.3 234 146-434 121-420 (741)
132 2oit_A Nucleoporin 214KDA; NH2 99.7 5.3E-16 1.8E-20 175.1 19.5 204 192-429 36-279 (434)
133 2hqs_A Protein TOLB; TOLB, PAL 99.7 3.7E-15 1.3E-19 167.3 25.5 176 213-432 159-348 (415)
134 2ojh_A Uncharacterized protein 99.7 2.3E-14 7.7E-19 150.5 28.6 221 153-432 20-262 (297)
135 1ri6_A Putative isomerase YBHE 99.7 4.8E-13 1.6E-17 144.2 37.3 241 146-431 50-313 (343)
136 2ecf_A Dipeptidyl peptidase IV 99.6 5.7E-14 1.9E-18 169.3 32.1 211 192-435 36-328 (741)
137 1k32_A Tricorn protease; prote 99.6 7.6E-14 2.6E-18 175.1 34.3 196 191-430 294-504 (1045)
138 3u4y_A Uncharacterized protein 99.6 1.4E-13 4.8E-18 148.3 30.7 210 188-430 79-306 (331)
139 2z3z_A Dipeptidyl aminopeptida 99.6 3.3E-14 1.1E-18 170.5 28.4 224 153-430 99-393 (706)
140 1ri6_A Putative isomerase YBHE 99.6 5.1E-13 1.7E-17 144.0 35.0 234 148-427 7-261 (343)
141 3u4y_A Uncharacterized protein 99.6 6E-13 2E-17 143.3 33.6 230 146-431 11-255 (331)
142 3hfq_A Uncharacterized protein 99.6 7.8E-13 2.7E-17 143.7 33.6 241 148-434 53-325 (347)
143 2oit_A Nucleoporin 214KDA; NH2 99.6 1.7E-14 5.9E-19 162.7 20.9 178 239-439 44-233 (434)
144 3vgz_A Uncharacterized protein 99.6 1E-12 3.4E-17 142.6 32.9 214 192-436 40-270 (353)
145 3vgz_A Uncharacterized protein 99.6 3.1E-12 1.1E-16 138.6 34.9 186 195-419 143-335 (353)
146 1pby_B Quinohemoprotein amine 99.6 5.7E-13 1.9E-17 143.2 28.3 250 147-438 3-320 (337)
147 1xfd_A DIP, dipeptidyl aminope 99.6 4.2E-14 1.5E-18 169.9 21.5 206 190-428 111-393 (723)
148 1xfd_A DIP, dipeptidyl aminope 99.5 3.9E-13 1.3E-17 161.4 26.2 218 195-435 19-296 (723)
149 1jmx_B Amine dehydrogenase; ox 99.5 1.6E-12 5.6E-17 140.5 26.7 254 144-438 10-335 (349)
150 3scy_A Hypothetical bacterial 99.5 9.6E-12 3.3E-16 136.0 32.6 185 191-400 153-360 (361)
151 2z3z_A Dipeptidyl aminopeptida 99.5 3.3E-12 1.1E-16 153.0 31.1 216 193-435 82-350 (706)
152 3scy_A Hypothetical bacterial 99.5 8.5E-11 2.9E-15 128.4 39.0 212 189-434 96-345 (361)
153 2ojh_A Uncharacterized protein 99.5 4.3E-12 1.5E-16 133.0 26.8 180 212-434 21-211 (297)
154 3hfq_A Uncharacterized protein 99.5 3.5E-11 1.2E-15 130.6 34.4 215 189-427 36-270 (347)
155 3o4h_A Acylamino-acid-releasin 99.5 9.4E-13 3.2E-17 154.2 23.5 182 195-427 112-314 (582)
156 1pby_B Quinohemoprotein amine 99.5 1.3E-11 4.5E-16 132.5 27.8 153 244-436 2-171 (337)
157 1jof_A Carboxy-CIS,CIS-muconat 99.4 1.7E-10 5.9E-15 126.6 32.8 206 193-432 40-296 (365)
158 1jmx_B Amine dehydrogenase; ox 99.4 2.4E-11 8.2E-16 131.2 24.3 161 198-384 5-182 (349)
159 3o4h_A Acylamino-acid-releasin 99.4 1.7E-11 5.9E-16 143.4 24.6 191 192-432 21-231 (582)
160 1urq_A M-tomosyn isoform; tran 99.4 9E-14 3.1E-18 108.3 3.3 60 757-820 4-63 (63)
161 4a5s_A Dipeptidyl peptidase 4 99.3 2.3E-09 7.8E-14 129.2 37.2 175 188-381 107-357 (740)
162 1jof_A Carboxy-CIS,CIS-muconat 99.3 2.1E-09 7.2E-14 117.8 31.9 212 195-429 85-342 (365)
163 1z68_A Fibroblast activation p 99.3 3.8E-10 1.3E-14 135.4 27.3 207 196-435 172-450 (719)
164 1q7f_A NHL, brain tumor CG1071 99.3 2.2E-09 7.6E-14 112.9 29.2 241 191-499 28-279 (286)
165 1z68_A Fibroblast activation p 99.2 1.9E-11 6.4E-16 146.8 12.7 206 197-432 20-295 (719)
166 3fvz_A Peptidyl-glycine alpha- 99.2 3.6E-09 1.2E-13 114.2 27.6 230 192-435 23-284 (329)
167 1q7f_A NHL, brain tumor CG1071 99.2 9.1E-09 3.1E-13 108.2 28.1 197 191-428 75-280 (286)
168 3azo_A Aminopeptidase; POP fam 99.2 3.7E-09 1.3E-13 125.4 27.4 212 191-433 128-374 (662)
169 3pe7_A Oligogalacturonate lyas 99.2 9.4E-09 3.2E-13 112.9 27.9 194 198-432 41-277 (388)
170 3azo_A Aminopeptidase; POP fam 99.1 2.9E-09 9.8E-14 126.4 23.2 217 188-433 19-279 (662)
171 4a5s_A Dipeptidyl peptidase 4 99.1 8E-10 2.7E-14 133.2 18.6 204 195-430 19-296 (740)
172 3fvz_A Peptidyl-glycine alpha- 99.1 1.2E-08 4.1E-13 110.1 26.1 208 192-427 90-321 (329)
173 3e5z_A Putative gluconolactona 99.1 4.2E-08 1.4E-12 103.8 29.0 212 188-438 23-255 (296)
174 3pe7_A Oligogalacturonate lyas 99.1 7.9E-09 2.7E-13 113.5 22.7 201 191-431 79-332 (388)
175 2oiz_A Aromatic amine dehydrog 99.0 9.3E-08 3.2E-12 104.7 29.5 239 154-435 30-343 (361)
176 2dg1_A DRP35, lactonase; beta 99.0 3.9E-07 1.3E-11 97.8 32.4 212 188-435 40-269 (333)
177 3no2_A Uncharacterized protein 99.0 1.8E-07 6.1E-12 98.3 27.9 238 146-436 6-260 (276)
178 1qks_A Cytochrome CD1 nitrite 99.0 9.3E-06 3.2E-10 94.0 44.0 235 145-428 167-421 (567)
179 3c5m_A Oligogalacturonate lyas 99.0 1E-08 3.5E-13 112.7 18.0 198 195-433 38-278 (396)
180 3c5m_A Oligogalacturonate lyas 98.9 1.1E-07 3.7E-12 104.3 23.5 155 190-380 185-387 (396)
181 3no2_A Uncharacterized protein 98.9 1.5E-07 5E-12 99.0 23.2 194 203-436 4-203 (276)
182 2xdw_A Prolyl endopeptidase; a 98.9 2.2E-07 7.5E-12 111.3 27.8 154 239-430 240-416 (710)
183 1xip_A Nucleoporin NUP159; bet 98.9 2.4E-08 8.1E-13 109.5 17.2 172 194-414 39-230 (388)
184 3e5z_A Putative gluconolactona 98.9 4E-07 1.4E-11 96.1 26.3 222 147-431 42-289 (296)
185 1rwi_B Serine/threonine-protei 98.9 5.5E-07 1.9E-11 93.2 26.1 196 194-430 25-224 (270)
186 2oiz_A Aromatic amine dehydrog 98.9 1.7E-06 5.7E-11 94.6 31.0 136 239-401 207-357 (361)
187 2xdw_A Prolyl endopeptidase; a 98.9 4.7E-07 1.6E-11 108.4 28.6 208 191-436 123-376 (710)
188 1rwi_B Serine/threonine-protei 98.9 3.5E-07 1.2E-11 94.8 23.9 196 193-429 67-265 (270)
189 2z2n_A Virginiamycin B lyase; 98.9 6.5E-06 2.2E-10 86.1 34.1 200 190-431 54-257 (299)
190 2z2n_A Virginiamycin B lyase; 98.8 5.3E-06 1.8E-10 86.8 30.8 203 188-432 10-216 (299)
191 2gop_A Trilobed protease; beta 98.8 3.4E-07 1.2E-11 98.7 21.6 186 193-432 59-295 (347)
192 2bkl_A Prolyl endopeptidase; m 98.8 6.6E-07 2.2E-11 106.9 26.0 205 190-434 118-356 (695)
193 3dsm_A Uncharacterized protein 98.8 9.5E-07 3.3E-11 95.1 24.9 228 148-436 57-309 (328)
194 1qks_A Cytochrome CD1 nitrite 98.8 5E-06 1.7E-10 96.2 31.7 154 239-430 163-331 (567)
195 2dg1_A DRP35, lactonase; beta 98.7 1.4E-05 4.6E-10 85.6 31.7 223 149-419 60-301 (333)
196 2gop_A Trilobed protease; beta 98.7 3.3E-06 1.1E-10 90.9 26.3 143 194-379 172-332 (347)
197 3dsm_A Uncharacterized protein 98.7 4.4E-06 1.5E-10 89.9 26.7 197 195-432 46-257 (328)
198 3dr2_A Exported gluconolactona 98.7 1.4E-05 4.7E-10 84.8 28.8 207 188-436 40-274 (305)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 1.1E-05 3.9E-10 85.1 28.1 209 193-436 18-264 (314)
200 2bkl_A Prolyl endopeptidase; m 98.6 5.7E-06 1.9E-10 98.7 28.6 191 201-430 76-306 (695)
201 1xip_A Nucleoporin NUP159; bet 98.6 6.5E-07 2.2E-11 98.1 17.9 170 239-452 45-223 (388)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 1.4E-05 4.7E-10 84.5 26.5 200 191-428 69-299 (314)
203 3g4e_A Regucalcin; six bladed 98.6 2E-05 6.9E-10 83.2 27.2 215 147-418 27-262 (297)
204 2qc5_A Streptogramin B lactona 98.6 0.00011 3.8E-09 76.5 32.8 201 190-432 59-263 (300)
205 2qc5_A Streptogramin B lactona 98.5 8.4E-05 2.9E-09 77.5 30.5 204 188-433 15-222 (300)
206 1yr2_A Prolyl oligopeptidase; 98.5 2.1E-05 7.2E-10 94.5 27.8 202 193-434 163-400 (741)
207 3g4e_A Regucalcin; six bladed 98.5 8.3E-05 2.8E-09 78.4 29.1 208 193-437 13-238 (297)
208 1yr2_A Prolyl oligopeptidase; 98.4 5.6E-05 1.9E-09 90.8 29.3 188 201-429 115-351 (741)
209 2mad_H Methylamine dehydrogena 98.4 0.00024 8.1E-09 77.8 31.7 212 197-434 70-356 (373)
210 3sjl_D Methylamine dehydrogena 98.4 7.2E-05 2.5E-09 81.6 27.1 214 195-436 139-371 (386)
211 3sjl_D Methylamine dehydrogena 98.4 0.00011 3.7E-09 80.2 26.3 156 239-432 40-213 (386)
212 2ghs_A AGR_C_1268P; regucalcin 98.3 0.0003 1E-08 75.2 29.1 214 147-419 63-293 (326)
213 2mad_H Methylamine dehydrogena 98.3 0.00067 2.3E-08 74.1 31.5 154 241-434 30-201 (373)
214 3dr2_A Exported gluconolactona 98.3 0.00014 4.8E-09 76.9 24.7 211 148-421 60-300 (305)
215 3hrp_A Uncharacterized protein 98.3 0.0004 1.4E-08 77.0 28.9 208 194-431 132-357 (409)
216 3c75_H MADH, methylamine dehyd 98.3 0.00022 7.5E-09 79.1 26.3 247 155-435 99-409 (426)
217 3q7m_A Lipoprotein YFGL, BAMB; 98.2 0.0032 1.1E-07 68.3 34.0 197 203-435 102-303 (376)
218 1kb0_A Quinohemoprotein alcoho 98.2 0.00086 2.9E-08 79.4 30.6 43 346-388 476-518 (677)
219 2ece_A 462AA long hypothetical 98.2 0.0051 1.8E-07 67.7 34.0 200 195-416 140-399 (462)
220 1kb0_A Quinohemoprotein alcoho 98.1 0.00057 2E-08 80.9 28.3 80 287-385 246-354 (677)
221 3hrp_A Uncharacterized protein 98.1 0.00083 2.8E-08 74.4 27.8 206 198-426 176-408 (409)
222 2hz6_A Endoplasmic reticulum t 98.1 1.4E-06 4.9E-11 95.5 4.8 185 203-436 8-200 (369)
223 2ghs_A AGR_C_1268P; regucalcin 98.1 0.0009 3.1E-08 71.5 26.3 203 195-436 51-267 (326)
224 1yiq_A Quinohemoprotein alcoho 98.1 0.00097 3.3E-08 79.1 28.5 62 367-438 454-515 (689)
225 3q7m_A Lipoprotein YFGL, BAMB; 98.1 0.0025 8.7E-08 69.1 29.9 240 240-556 100-344 (376)
226 3iuj_A Prolyl endopeptidase; h 98.0 0.001 3.4E-08 79.1 27.7 202 191-434 127-364 (693)
227 1n7s_A Vesicle-associated memb 98.0 3E-06 1E-10 66.7 3.6 46 774-819 17-62 (63)
228 3iuj_A Prolyl endopeptidase; h 98.0 0.00051 1.7E-08 81.7 23.7 153 239-431 136-317 (693)
229 2hz6_A Endoplasmic reticulum t 98.0 2.5E-06 8.6E-11 93.5 3.4 148 242-435 8-156 (369)
230 1mda_H Methylamine dehydrogena 98.0 0.00044 1.5E-08 75.2 21.0 76 352-437 269-355 (368)
231 3ei3_A DNA damage-binding prot 98.0 0.084 2.9E-06 65.9 43.8 428 15-554 275-729 (1158)
232 1yiq_A Quinohemoprotein alcoho 97.9 0.0063 2.1E-07 72.1 30.5 86 287-385 238-346 (689)
233 1npe_A Nidogen, entactin; glyc 97.8 0.036 1.2E-06 56.7 30.8 201 193-436 36-246 (267)
234 1sfc_A VAMP 2, protein (synapt 97.8 1.7E-05 5.7E-10 67.8 4.0 62 757-822 30-91 (96)
235 3c75_H MADH, methylamine dehyd 97.7 0.0051 1.7E-07 68.0 25.0 150 241-433 82-253 (426)
236 2qe8_A Uncharacterized protein 97.7 0.0022 7.4E-08 69.0 21.4 228 193-431 17-281 (343)
237 4a2l_A BT_4663, two-component 97.6 0.086 2.9E-06 63.4 36.1 214 192-433 214-441 (795)
238 3hxj_A Pyrrolo-quinoline quino 97.6 0.0027 9.3E-08 67.1 19.7 217 146-435 31-250 (330)
239 1l4a_A Synaptobrevin; snare, s 97.6 1.6E-05 5.6E-10 65.6 1.5 60 756-819 14-73 (80)
240 2kog_A Vesicle-associated memb 97.5 2E-05 6.8E-10 70.1 1.1 47 774-820 46-92 (119)
241 3hd7_A Vesicle-associated memb 97.5 5.4E-05 1.9E-09 64.1 3.4 47 775-821 19-65 (91)
242 3hxj_A Pyrrolo-quinoline quino 97.5 0.0032 1.1E-07 66.5 18.3 214 145-427 107-323 (330)
243 3b5n_A Synaptobrevin homolog 1 97.4 7.4E-05 2.5E-09 58.2 3.4 44 776-819 17-60 (61)
244 1mda_H Methylamine dehydrogena 97.4 0.017 5.8E-07 62.6 23.5 75 289-385 269-354 (368)
245 2qe8_A Uncharacterized protein 97.4 0.0077 2.6E-07 64.6 20.1 212 190-421 64-314 (343)
246 1kv9_A Type II quinohemoprotei 97.3 0.078 2.7E-06 62.4 29.3 62 367-438 437-498 (668)
247 3nol_A Glutamine cyclotransfer 97.3 0.034 1.2E-06 56.7 22.3 152 239-437 50-210 (262)
248 2ad6_A Methanol dehydrogenase 97.3 0.22 7.5E-06 57.3 31.4 62 367-438 443-504 (571)
249 1kv9_A Type II quinohemoprotei 97.2 0.17 5.7E-06 59.6 30.1 79 287-384 233-340 (668)
250 2nps_A VAMP-4, vesicle-associa 97.2 0.00023 7.9E-09 57.7 3.7 46 775-820 22-67 (74)
251 2iwa_A Glutamine cyclotransfer 97.2 0.017 5.8E-07 59.4 18.7 157 239-437 28-190 (266)
252 2ece_A 462AA long hypothetical 97.1 0.087 3E-06 58.0 24.5 192 202-427 93-351 (462)
253 2fp8_A Strictosidine synthase; 97.1 0.16 5.6E-06 53.4 26.5 200 195-435 21-275 (322)
254 2fp8_A Strictosidine synthase; 97.1 0.16 5.4E-06 53.5 26.4 195 194-427 81-312 (322)
255 3nok_A Glutaminyl cyclase; bet 97.0 0.021 7.3E-07 58.2 17.2 151 242-437 64-219 (268)
256 1w6s_A Methanol dehydrogenase 97.0 0.65 2.2E-05 53.6 31.9 30 356-385 318-350 (599)
257 2iwa_A Glutamine cyclotransfer 97.0 0.08 2.7E-06 54.3 21.2 196 194-428 22-237 (266)
258 3nol_A Glutamine cyclotransfer 96.9 0.071 2.4E-06 54.3 20.2 184 193-417 43-244 (262)
259 2xbg_A YCF48-like protein; pho 96.9 0.32 1.1E-05 51.5 26.6 193 194-426 123-320 (327)
260 1w6s_A Methanol dehydrogenase 96.9 0.31 1.1E-05 56.3 27.7 62 366-437 451-512 (599)
261 1gl2_A Endobrevin; membrane pr 96.8 0.00048 1.7E-08 54.2 2.5 42 775-816 23-64 (65)
262 3nok_A Glutaminyl cyclase; bet 96.8 0.13 4.4E-06 52.5 20.8 182 193-416 55-253 (268)
263 3v9f_A Two-component system se 96.8 0.7 2.4E-05 55.2 31.3 205 192-432 362-572 (781)
264 3mbr_X Glutamine cyclotransfer 96.7 0.14 4.6E-06 51.7 19.7 154 239-437 28-188 (243)
265 1fwx_A Nitrous oxide reductase 96.6 0.039 1.4E-06 62.8 16.9 203 201-428 98-361 (595)
266 2ad6_A Methanol dehydrogenase 96.5 1.4 4.6E-05 50.6 30.0 31 356-386 311-344 (571)
267 3qqz_A Putative uncharacterize 96.5 0.7 2.4E-05 47.0 24.3 217 188-427 22-252 (255)
268 1flg_A Protein (quinoprotein e 96.5 0.59 2E-05 53.8 26.7 61 367-437 465-525 (582)
269 3mbr_X Glutamine cyclotransfer 96.5 0.27 9.3E-06 49.5 20.7 184 193-417 21-223 (243)
270 4a2l_A BT_4663, two-component 96.5 2.3 7.7E-05 50.8 46.6 242 146-432 321-575 (795)
271 1npe_A Nidogen, entactin; glyc 96.5 0.89 3.1E-05 46.0 25.7 173 193-401 79-260 (267)
272 1k3i_A Galactose oxidase precu 96.4 0.41 1.4E-05 56.0 24.8 116 239-381 193-327 (656)
273 1fwx_A Nitrous oxide reductase 96.4 0.83 2.8E-05 52.0 25.8 132 285-430 278-433 (595)
274 3v65_B Low-density lipoprotein 96.3 1.5 5.3E-05 47.4 29.7 203 193-436 116-326 (386)
275 3sov_A LRP-6, low-density lipo 96.2 1.5 5.1E-05 46.1 25.9 200 194-435 36-245 (318)
276 3v9f_A Two-component system se 96.2 3.2 0.00011 49.3 50.2 217 193-432 211-440 (781)
277 1k3i_A Galactose oxidase precu 96.2 0.38 1.3E-05 56.3 22.9 110 197-315 190-324 (656)
278 3p5b_L Low density lipoprotein 96.0 2.3 7.7E-05 46.3 32.1 232 147-435 84-327 (400)
279 1ijq_A LDL receptor, low-densi 96.0 1.9 6.4E-05 45.2 32.5 204 193-436 30-246 (316)
280 2p4o_A Hypothetical protein; p 95.9 1.9 6.5E-05 44.7 24.8 96 201-305 175-279 (306)
281 3v64_C Agrin; beta propeller, 95.8 2.6 8.7E-05 44.9 30.3 201 193-436 73-283 (349)
282 2xe4_A Oligopeptidase B; hydro 95.4 0.12 4.2E-06 61.6 14.5 150 239-428 181-354 (751)
283 2xe4_A Oligopeptidase B; hydro 95.2 0.81 2.8E-05 54.4 21.0 110 194-314 175-304 (751)
284 2xbg_A YCF48-like protein; pho 95.2 3.7 0.00013 43.1 28.8 197 192-431 79-281 (327)
285 2p4o_A Hypothetical protein; p 95.1 3.7 0.00013 42.5 30.1 195 193-419 72-279 (306)
286 1flg_A Protein (quinoprotein e 94.8 2.6 8.8E-05 48.4 23.0 31 356-386 331-364 (582)
287 3m0c_C LDL receptor, low-densi 94.7 9.4 0.00032 45.4 31.7 204 192-435 423-639 (791)
288 1n7d_A LDL receptor, low-densi 94.6 0.24 8.2E-06 58.5 13.9 202 194-435 407-621 (699)
289 3amr_A 3-phytase; beta-propell 94.6 4.7 0.00016 42.7 22.2 163 252-439 98-275 (355)
290 3m0c_C LDL receptor, low-densi 94.4 10 0.00034 45.1 27.1 151 239-427 431-588 (791)
291 3pbp_A Nucleoporin NUP82; beta 94.1 0.6 2E-05 50.7 14.2 157 145-309 23-207 (452)
292 2p9w_A MAL S 1 allergenic prot 94.1 3.1 0.00011 43.7 19.3 158 239-427 20-214 (334)
293 3amr_A 3-phytase; beta-propell 93.9 7.7 0.00026 41.1 24.3 149 242-427 39-209 (355)
294 4b93_A Vesicle-associated memb 93.9 0.0053 1.8E-07 59.8 -2.2 38 782-819 146-183 (189)
295 3tc9_A Hypothetical hydrolase; 93.8 1.6 5.5E-05 48.0 17.7 148 239-427 144-300 (430)
296 2nut_C Vesicle-trafficking pro 93.3 0.016 5.5E-07 56.8 0.2 42 781-822 154-195 (196)
297 3v65_B Low-density lipoprotein 93.3 8.3 0.00029 41.4 22.1 151 239-428 123-277 (386)
298 3v64_C Agrin; beta propeller, 93.1 10 0.00035 40.1 24.4 150 239-428 80-234 (349)
299 3p5b_L Low density lipoprotein 93.1 11 0.00039 40.6 27.3 153 239-428 119-277 (400)
300 3s94_A LRP-6, low-density lipo 92.8 12 0.0004 43.2 23.6 230 147-434 10-249 (619)
301 1ijq_A LDL receptor, low-densi 92.7 10 0.00036 39.3 28.1 149 239-427 37-194 (316)
302 3qqz_A Putative uncharacterize 92.7 9.3 0.00032 38.5 25.7 170 234-435 27-210 (255)
303 4hw6_A Hypothetical protein, I 92.6 14 0.00048 40.4 26.9 176 192-381 181-377 (433)
304 3pbp_A Nucleoporin NUP82; beta 92.5 2 6.8E-05 46.7 15.1 77 348-428 67-158 (452)
305 4a0p_A LRP6, LRP-6, low-densit 92.4 19 0.00065 41.5 31.8 228 147-435 7-244 (628)
306 3tc9_A Hypothetical hydrolase; 92.3 15 0.00052 40.0 26.7 113 192-314 178-301 (430)
307 2p9w_A MAL S 1 allergenic prot 91.8 5 0.00017 42.1 16.9 166 196-379 16-217 (334)
308 3kyq_A YKT6, synaptobrevin hom 91.2 0.027 9.2E-07 55.0 -1.2 35 781-815 158-192 (199)
309 3ei3_A DNA damage-binding prot 90.4 42 0.0014 41.7 46.2 124 295-452 844-979 (1158)
310 3ott_A Two-component system se 89.2 40 0.0014 39.6 25.4 201 193-432 63-264 (758)
311 4hw6_A Hypothetical protein, I 89.2 7.2 0.00025 42.8 16.3 149 239-427 146-303 (433)
312 3kya_A Putative phosphatase; s 88.5 11 0.00037 42.1 17.0 157 239-427 146-340 (496)
313 4a0p_A LRP6, LRP-6, low-densit 84.8 61 0.0021 37.2 30.0 204 193-435 340-556 (628)
314 1n7d_A LDL receptor, low-densi 84.8 4.7 0.00016 47.4 12.2 153 239-427 413-570 (699)
315 3sre_A PON1, serum paraoxonase 84.3 45 0.0015 35.2 23.1 104 245-377 129-252 (355)
316 3kya_A Putative phosphatase; s 84.2 56 0.0019 36.2 22.3 167 194-377 140-341 (496)
317 3s94_A LRP-6, low-density lipo 83.9 66 0.0023 36.8 28.9 197 193-430 349-553 (619)
318 4asc_A Kelch repeat and BTB do 80.9 52 0.0018 33.5 18.8 64 242-315 98-175 (315)
319 3sre_A PON1, serum paraoxonase 80.8 61 0.0021 34.2 19.5 143 251-427 81-251 (355)
320 3sov_A LRP-6, low-density lipo 78.7 64 0.0022 33.3 23.6 150 239-427 42-196 (318)
321 2vpj_A Kelch-like protein 12; 78.3 60 0.002 32.7 20.3 65 241-315 158-232 (301)
322 2be1_A Serine/threonine-protei 76.9 8.6 0.00029 40.6 9.6 72 365-437 64-139 (339)
323 2vpj_A Kelch-like protein 12; 74.7 74 0.0025 31.9 22.7 64 241-314 205-278 (301)
324 2xn4_A Kelch-like protein 2; s 69.9 55 0.0019 33.0 13.9 66 357-431 204-279 (302)
325 1bpo_A Protein (clathrin); cla 65.8 1.6E+02 0.0054 32.1 26.3 179 198-386 71-298 (494)
326 2xn4_A Kelch-like protein 2; s 65.7 1.1E+02 0.0039 30.5 20.8 65 241-315 154-230 (302)
327 2xzh_A Clathrin heavy chain 1; 65.0 1.4E+02 0.0047 31.3 29.6 177 199-386 73-299 (365)
328 2ism_A Putative oxidoreductase 63.6 63 0.0022 33.8 13.0 74 285-378 32-115 (352)
329 3a9g_A Putative uncharacterize 61.3 75 0.0026 33.3 13.1 75 284-378 29-115 (354)
330 1tl2_A L10, protein (tachylect 60.4 20 0.00069 35.2 7.4 113 284-422 41-157 (236)
331 1tl2_A L10, protein (tachylect 59.8 37 0.0013 33.4 9.2 107 239-371 48-157 (236)
332 2uvk_A YJHT; unknown function, 58.2 1.7E+02 0.0058 30.0 19.5 29 356-384 315-349 (357)
333 4gq2_M Nucleoporin NUP120; bet 56.9 63 0.0022 39.1 12.8 40 348-387 237-276 (950)
334 1zgk_A Kelch-like ECH-associat 55.3 1.8E+02 0.006 29.3 22.3 64 242-315 168-241 (308)
335 3das_A Putative oxidoreductase 53.6 1.4E+02 0.0049 31.2 13.4 30 284-313 32-61 (347)
336 1xi4_A Clathrin heavy chain; a 52.4 4.6E+02 0.016 33.2 19.3 38 349-386 261-298 (1630)
337 3ii7_A Kelch-like protein 7; p 50.1 2.1E+02 0.0071 28.6 19.3 66 357-431 149-228 (306)
338 1cru_A Protein (soluble quinop 49.6 1.7E+02 0.0059 31.8 13.9 30 284-313 27-56 (454)
339 2zwa_A Leucine carboxyl methyl 49.0 1.7E+02 0.006 33.7 14.6 112 242-379 451-579 (695)
340 2uvk_A YJHT; unknown function, 47.1 2.4E+02 0.0082 28.9 14.2 55 241-304 64-128 (357)
341 3ii7_A Kelch-like protein 7; p 46.5 2.3E+02 0.008 28.2 19.2 64 242-315 200-273 (306)
342 1cru_A Protein (soluble quinop 44.2 2.1E+02 0.0071 31.1 13.5 62 239-302 34-98 (454)
343 1zgk_A Kelch-like ECH-associat 44.2 2.6E+02 0.0088 28.0 19.4 66 357-431 168-243 (308)
344 2g8s_A Glucose/sorbosone dehyd 42.9 1.7E+02 0.0059 30.4 12.2 122 284-427 18-172 (353)
345 4gq2_M Nucleoporin NUP120; bet 41.2 1.2E+02 0.0041 36.7 11.7 29 408-436 246-274 (950)
346 2be1_A Serine/threonine-protei 40.8 51 0.0018 34.6 7.4 71 359-434 11-82 (339)
347 2ism_A Putative oxidoreductase 38.5 97 0.0033 32.4 9.3 76 348-429 32-115 (352)
348 2woz_A Kelch repeat and BTB do 38.2 3.2E+02 0.011 27.4 20.3 64 242-315 109-185 (318)
349 2zwa_A Leucine carboxyl methyl 38.1 5.1E+02 0.017 29.7 18.3 117 241-381 396-526 (695)
350 3das_A Putative oxidoreductase 38.1 3.1E+02 0.011 28.6 13.0 71 239-313 39-115 (347)
351 4fhn_B Nucleoporin NUP120; pro 36.9 74 0.0025 39.4 9.2 29 408-436 248-276 (1139)
352 3etw_A Adhesin A; antiparallel 35.7 28 0.00096 30.3 3.5 49 775-823 34-84 (119)
353 4fhn_B Nucleoporin NUP120; pro 32.9 96 0.0033 38.4 9.3 40 348-387 239-278 (1139)
354 3sbq_A Nitrous-oxide reductase 32.0 3.2E+02 0.011 30.8 12.0 85 285-378 324-409 (638)
355 4asc_A Kelch repeat and BTB do 31.3 4E+02 0.014 26.5 20.9 67 357-432 148-225 (315)
356 2xzh_A Clathrin heavy chain 1; 30.9 4.8E+02 0.016 27.2 26.8 238 239-549 74-332 (365)
357 3ryc_E Stathmin-4; alpha-tubul 23.6 1.2E+02 0.0041 27.1 5.5 55 757-823 43-107 (143)
358 3a9g_A Putative uncharacterize 23.6 6.1E+02 0.021 26.0 24.5 102 193-301 29-152 (354)
359 3hd7_A Vesicle-associated memb 22.5 86 0.0029 25.8 4.2 49 775-823 12-60 (91)
360 3ott_A Two-component system se 22.1 9.2E+02 0.031 27.5 38.4 191 194-425 104-304 (758)
361 3l6v_A GYRA, DNA gyrase subuni 22.0 7E+02 0.024 26.1 19.9 190 352-588 1-206 (370)
362 2avr_X Adhesion A; antiparalle 22.0 83 0.0028 27.2 4.0 48 775-822 34-83 (119)
363 2woz_A Kelch repeat and BTB do 21.7 6E+02 0.02 25.2 21.2 67 357-432 158-235 (318)
364 1bpo_A Protein (clathrin); cla 21.2 8.2E+02 0.028 26.6 26.1 239 239-548 73-330 (494)
No 1
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-50 Score=491.77 Aligned_cols=603 Identities=14% Similarity=0.136 Sum_probs=406.7
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCcccc--ccccccccccccccccCCCCCCcCCeEEEEEeeeC-CCCce
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNL--KTEECGTQITPICKLNLGYKLDKIPISSLKWVYAD-GKASR 89 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~-~~~g~ 89 (826)
...|++++| +|+|.+||+|+.||.|++||++++... +.........+........-.+..+|..+.|+... +.++.
T Consensus 211 ~~~V~~v~f-spdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ 289 (902)
T 2oaj_A 211 TPKVIQSLY-HPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTS 289 (902)
T ss_dssp CCCEEEEEE-CTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEE
T ss_pred CCCeEEEEE-cCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCE
Confidence 457999999 589999999999999999999887321 11111111111000000001245689999998853 44567
Q ss_pred EEEEccCCcCc-cceeEEEEccc----------------CCcceeEEEeecCCCceeeEEEecC-CCC-CCCCCCceEEE
Q 003360 90 LYIMGASDFVS-MNLLQIVLLNE----------------QTESRTTKLALPLSEPCIDMEIISS-SSD-PNKPKQDSFLL 150 (826)
Q Consensus 90 lli~gg~~~~~-~~~~~vl~~~~----------------~~~~~~~~~~l~~~~~~~d~~~l~~-~~~-~~~~~~~~liv 150 (826)
++++||.+.+. ...+.++.+.. ........+.+...+.+.++.+++. +++ .+.+++..+++
T Consensus 290 ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~ 369 (902)
T 2oaj_A 290 LLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL 369 (902)
T ss_dssp EEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEE
T ss_pred EEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEE
Confidence 88888765322 12444444211 0111122233345778899988873 332 22344557888
Q ss_pred eccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeeccc
Q 003360 151 LGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFET 230 (826)
Q Consensus 151 ~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~ 230 (826)
++.+|.|.+||..+ +.........+..+..|.+.|++++|++....++.+. +.........+ .
T Consensus 370 ~s~dg~l~~~~~~~----------g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~------~~~~~~~~~~l-~ 432 (902)
T 2oaj_A 370 ILGNGEIETMLYPS----------GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA------LSAAQNKDYLL-K 432 (902)
T ss_dssp EETTSCEEEEETTT----------CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH------HHTTBCCCCSC-C
T ss_pred EcCCCcEEEEECCC----------CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH------HhcccCCCCcc-c
Confidence 89999999998743 1000111223345678889999999976543322111 00001111122 5
Q ss_pred ccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceee--eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc
Q 003360 231 KLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLL--ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM 306 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~--i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~ 306 (826)
+|...+.+ |+|++++|+||+.||+||+||+....+.. .+.+... ...-..|...|++|+|+|++++||+|+.||+
T Consensus 433 G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~-~~~~~~h~~~V~svafspdg~~LAsgs~Dgt 511 (902)
T 2oaj_A 433 GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS-RTLNKAKELAVDKISFAAETLELAVSIETGD 511 (902)
T ss_dssp CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH-HHTTCSSSCCEEEEEEETTTTEEEEEETTSC
T ss_pred CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech-hhcCCCCCCceeEEEecCCCCeEEEEecCcE
Confidence 56666666 89999999999999999999995544210 0000000 0000267889999999999999999999999
Q ss_pred EEEEEeCCCCCccc----------------------cceEEEeecCCCC-eEEEEE-EEEeeccCCeEEEEEccCCCEEE
Q 003360 307 VRIFKLKYEPHAIE----------------------NSFLSFTGSKKGN-SHIIHS-VKVMKINGSIISLNMNRNSQHLA 362 (826)
Q Consensus 307 V~iwd~~~~~~~~~----------------------~~~~~i~~s~~~~-~~~~~~-~~~~~~~~~V~~l~~s~~g~~la 362 (826)
|+|||+.++..... .....+....+.. ...+.. ..+..|.+.|++|+|||+| +||
T Consensus 512 V~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lA 590 (902)
T 2oaj_A 512 VVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVG 590 (902)
T ss_dssp EEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEE
T ss_pred EEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEE
Confidence 99999986632100 0011111111110 000011 2334578899999999999 999
Q ss_pred EEecCCeEEEEecCCCeeEEeeec--c-cCCCCCeeEEEEeeccc--CCCCCcEEEEEECCCcEEEEEC---CCCceEEe
Q 003360 363 VGSDQGYVYLLDTEGPTVLYQKHI--A-SDISSGIVSLQFETCSL--QGFEKNFLVIATKDSSVLVLDS---DNGNMLST 434 (826)
Q Consensus 363 sGs~dG~V~vwD~~~~~~l~~~~~--~-~~~~~~V~sl~f~~~~~--~~~d~~~l~sgs~Dg~V~iwd~---~tg~~i~~ 434 (826)
+|+.||+|+|||++++.+++...+ . .+|...|++++|+.+.. +++++.+|++|+.|++|++||+ .+|+++.+
T Consensus 591 sgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~ 670 (902)
T 2oaj_A 591 IAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ 670 (902)
T ss_dssp EEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred EEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence 999999999999999988764333 2 27889999999992211 1112589999999999999999 88999998
Q ss_pred eeccCCC--CCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeee
Q 003360 435 NLIHPKK--PSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKK 512 (826)
Q Consensus 435 ~~~~~~~--~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~ 512 (826)
+..|... ...++.+..++.+.+.++.++...++.++.+... ++++++|+++.+|||+++ +.+++++.
T Consensus 671 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~------~~~~l~~~~~~ir~~~~~-----~~k~~~k~ 739 (902)
T 2oaj_A 671 LMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCI------PGIVLITGFDDIRLITLG-----KSKSTHKG 739 (902)
T ss_dssp EEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCC------CEEEEEECSSEEEEECTT-----CCCEEEEE
T ss_pred ecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCC------CeEEEEEeccceEEEeCc-----cccceeeE
Confidence 8777532 5677788878766666666666666666555443 478999999999999998 56788887
Q ss_pred ecCCCCceeeEe--ee-------eCCceEEEEEEeeceEEEeccCCccccccccccceeecCCCCCCCcccceeccCCCc
Q 003360 513 KFHSSSCCWAST--FY-------SGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGE 583 (826)
Q Consensus 513 ~~~~~~c~~~~~--~~-------~~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~~~~~~~~~~~~~s~~G~ 583 (826)
+. ..|+++++ +. ..++.+|++++++|+|++|++|+|++|.+.++.. ..+..+....+++.+|+
T Consensus 740 -~~-~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~------~~~~~~~~~~~~~~~G~ 811 (902)
T 2oaj_A 740 -FK-YPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPF------PIAAKYITESSVLRNGD 811 (902)
T ss_dssp -CS-SCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSS------CCCHHHHTTCEECTTSC
T ss_pred -cc-cceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCc------ccccccccceEEcCCCC
Confidence 44 45888887 55 3778999999999999999999999999965432 23344567789999999
Q ss_pred EEEEcCCeeeeeeeecccCCccccCCCccccCCCCcCccccccccccccccccccceeceeeccCcCCCCCcccchhhHH
Q 003360 584 LIMVNGNQEAFFISALRQRDFFRFLDSACQVYSYDPTLLQEGVVSASIVQTEKKKGIFGSVLKGNKTKQAPDVEREETWE 663 (826)
Q Consensus 584 i~~~~g~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 663 (826)
+++|.+|+|++++++|+++..++ ...|.||||++..||||+|+.- | -++| .+-+-
T Consensus 812 ~~~~~~~~e~~~~~~~~~~~~~~--~~~~~l~~~~~~~p~rp~~~~~--~----------~~~g-----~~~~~------ 866 (902)
T 2oaj_A 812 IAIRVSEFQASLFSTVKEQDTLA--PVSDTLYINGIRIPYRPQVNSL--Q----------WARG-----TVYCT------ 866 (902)
T ss_dssp EEEECSSSEEEEEEEESCCCCCC--CCCCBCCCTTCCCCCCCCCCTT--T----------SCSS-----CCCCC------
T ss_pred EEEEeChhheEEEEEEcCCCCCC--CCCceeeCCCCCCCCCCCcCcc--h----------hhCC-----cEeeC------
Confidence 99999999999999999888774 4569999999999999997522 1 2355 22232
Q ss_pred hHHHHHhhhcCCCCCCC
Q 003360 664 IIEELATIFSTANFQCD 680 (826)
Q Consensus 664 ~~~~~~~~f~~~~~~~~ 680 (826)
-++|..|+++++-+++
T Consensus 867 -~~~~~~l~~g~~r~~~ 882 (902)
T 2oaj_A 867 -PAQLNELLGGVNRPAS 882 (902)
T ss_dssp -HHHHHHHHHCTTCCCC
T ss_pred -HHHHHHHhcCCCCCCC
Confidence 4558889988876543
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.1e-33 Score=328.89 Aligned_cols=466 Identities=14% Similarity=0.179 Sum_probs=319.5
Q ss_pred CccccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEee
Q 003360 3 GNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVY 82 (826)
Q Consensus 3 ~~~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~ 82 (826)
+.+++++..|...|++++| +|||++||+|+.||.|++||+... .+..+ ..+..+|..+.|..
T Consensus 47 ~~~~~~l~gh~~~V~~l~f-spdg~~las~~~d~~i~vWd~~~~-------------~~~~~----~~~~~~v~~~~~s~ 108 (577)
T 2ymu_A 47 GQLLQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNRNGQ-------------LLQTL----TGHSSSVRGVAFSP 108 (577)
T ss_dssp SCEEEEEECCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTSC-------------EEEEE----CCCSSCEEEEEECT
T ss_pred CCEEEEEeCCCCCEEEEEE-CCCCCEEEEEeCCCEEEEEECCCC-------------EEEEE----ECCCCCEEEEEECC
Confidence 3455667778889999999 689999999999999999996432 11111 12345788888864
Q ss_pred eCCCCceEEEEccCCcCccceeEEEEcccCCc------------------c-------------------eeEEEeecCC
Q 003360 83 ADGKASRLYIMGASDFVSMNLLQIVLLNEQTE------------------S-------------------RTTKLALPLS 125 (826)
Q Consensus 83 ~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~------------------~-------------------~~~~~~l~~~ 125 (826)
++..+++++.+. .+.++....... . ..........
T Consensus 109 ----d~~~l~~~~~d~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (577)
T 2ymu_A 109 ----DGQTIASASDDK----TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 180 (577)
T ss_dssp ----TSSEEEEEETTS----CEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCS
T ss_pred ----CCCEEEEEcCCC----ceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCC
Confidence 345555554422 122221111000 0 0000000111
Q ss_pred CceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC
Q 003360 126 EPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS 205 (826)
Q Consensus 126 ~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~ 205 (826)
..+..+.. .++...++.++.+|.+.+||... .....+..|...|++++|+|+++
T Consensus 181 ~~v~~~~~--------~~~~~~l~~~~~d~~v~~w~~~~------------------~~~~~~~~~~~~v~~~~~s~dg~ 234 (577)
T 2ymu_A 181 SSVWGVAF--------SPDGQTIASASDDKTVKLWNRNG------------------QLLQTLTGHSSSVRGVAFSPDGQ 234 (577)
T ss_dssp SCEEEEEE--------CTTSSCEEEEETTSEEEEECTTS------------------CEEEEEECCSSCEEEEEECTTSS
T ss_pred cceeeeee--------cCCCCEEEEEcCCCEEEEEeCCC------------------cEEEEEecCCCCEEEEEECCCCC
Confidence 11111111 12335677888899999998543 12345678999999999999999
Q ss_pred eEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccC
Q 003360 206 FILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLS 282 (826)
Q Consensus 206 ~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h 282 (826)
.+++++ |+.+++|+.....+..+ .+|.+.|.+ |+|++++|++++.|++|++||..+... .. +..|
T Consensus 235 ~l~~~~~d~~i~~w~~~~~~~~~~-~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~---~~--------~~~h 302 (577)
T 2ymu_A 235 TIASASDDKTVKLWNRNGQLLQTL-TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLL---QT--------LTGH 302 (577)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE---EE--------ECCC
T ss_pred EEEEEeCCCEEEEEeCCCCEEEEE-ecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEE---EE--------EecC
Confidence 999988 99999998766555444 779999988 999999999999999999999866542 11 2467
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC----CccccceEEEeecCCCCeEE---------EEE------EEEe
Q 003360 283 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP----HAIENSFLSFTGSKKGNSHI---------IHS------VKVM 343 (826)
Q Consensus 283 ~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~----~~~~~~~~~i~~s~~~~~~~---------~~~------~~~~ 343 (826)
...|++++|+|++..|++++.||.|++|+..... ..+...+..+.+++++.... ++. ....
T Consensus 303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~ 382 (577)
T 2ymu_A 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 382 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEec
Confidence 8899999999999999999999999999987552 22445677777877765422 111 2233
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.|...|++++|+|+|++|++|+.||.|++||. +++.+... .+|...|++++|+| |+.+|++++.|++|++
T Consensus 383 ~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~---~~~~~~v~~~~~s~------d~~~l~~~~~d~~v~~ 452 (577)
T 2ymu_A 383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL---TGHSSSVWGVAFSP------DDQTIASASDDKTVKL 452 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEE---ECCSSCEEEEEECT------TSSEEEEEETTSEEEE
T ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEe---cCCCCCeEEEEECC------CCCEEEEEcCCCEEEE
Confidence 46778999999999999999999999999996 45555333 47889999999999 6999999999999999
Q ss_pred EECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe-ecCcEEEEeccccc
Q 003360 424 LDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC-SEKAACAYSLSHAV 502 (826)
Q Consensus 424 wd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-se~~irv~sl~~~~ 502 (826)
||.. ++.+..+..|.. .+.++.+ ++++.+++++ .++.|+||+...
T Consensus 453 w~~~-~~~~~~~~~~~~---~v~~~~~----------------------------spd~~~las~~~d~~i~iw~~~~-- 498 (577)
T 2ymu_A 453 WNRN-GQLLQTLTGHSS---SVRGVAF----------------------------SPDGQTIASASDDKTVKLWNRNG-- 498 (577)
T ss_dssp EETT-SCEEEEEECCSS---CEEEEEE----------------------------CTTSCEEEEEETTSEEEEEETTS--
T ss_pred EECC-CCEEEEEcCCCC---CEEEEEE----------------------------cCCCCEEEEEeCCCEEEEEcCCC--
Confidence 9964 777777655432 2333332 3444555555 456899999652
Q ss_pred cccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccccc-----cccceeecCCCCCCCccccee
Q 003360 503 QGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKET-----SIRGFVYLTPKPNSLSNTLMC 577 (826)
Q Consensus 503 ~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~-----sl~~~~~~~~~~~~~~~~~~~ 577 (826)
+.+.....+.... ..+..++++..|+....+|.|++|.++. +.+... .+.++.|. +++...++
T Consensus 499 ----~~~~~~~~h~~~v--~~l~~s~dg~~l~s~~~dg~v~lwd~~~-~~~~~~~~h~~~v~~~~fs-----~dg~~l~s 566 (577)
T 2ymu_A 499 ----QLLQTLTGHSSSV--RGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFS-----PDGQTIAS 566 (577)
T ss_dssp ----CEEEEEECCSSCE--EEEEECTTSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEEC-----TTSSCEEE
T ss_pred ----CEEEEEeCCCCCE--EEEEEcCCCCEEEEEECcCEEEEEeCCC-CEEEEEcCCCCCEEEEEEc-----CCCCEEEE
Confidence 2233322221111 1111226677888899999999999763 444432 24456676 46677778
Q ss_pred ccCCCcEEEEc
Q 003360 578 SSWDGELIMVN 588 (826)
Q Consensus 578 ~s~~G~i~~~~ 588 (826)
.+.||.|.+|+
T Consensus 567 ~~~D~~i~~Wd 577 (577)
T 2ymu_A 567 ASSDKTVKLWN 577 (577)
T ss_dssp EETTSCEEEEC
T ss_pred EeCCCEEEEeC
Confidence 88888888875
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.6e-34 Score=335.86 Aligned_cols=454 Identities=14% Similarity=0.151 Sum_probs=295.3
Q ss_pred cccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeC
Q 003360 5 VLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYAD 84 (826)
Q Consensus 5 ~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~ 84 (826)
....+..|...|++++| +|+|.+||+|+.||.|++||+.++... .+.. ...+..+|..++|..
T Consensus 51 ~~~~~~~h~~~v~~~~~-spdg~~lasg~~d~~v~lWd~~~~~~~------------~~~~--~~~~~~~v~~v~fs~-- 113 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKT-SPSGYYCASGDVHGNVRIWDTTQTTHI------------LKTT--IPVFSGPVKDISWDS-- 113 (611)
T ss_dssp CCEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEESSSTTCC------------EEEE--EECSSSCEEEEEECT--
T ss_pred cCeEecCCCCceEEEEE-CCCCcEEEEEeCCCCEEEeECCCCcce------------eeEe--ecccCCceEEEEECC--
Confidence 34455567788999999 689999999999999999998754110 0000 112345899999975
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchh
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~ 164 (826)
++..++++|.+. ....+++.++.......+ . .....+..+.+-|.. +..++.++.++.+.+||...
T Consensus 114 --dg~~l~~~~~~~--~~~~~v~~wd~~~~~~~l--~-gh~~~v~~v~f~p~~-------~~~l~s~s~D~~v~lwd~~~ 179 (611)
T 1nr0_A 114 --ESKRIAAVGEGR--ERFGHVFLFDTGTSNGNL--T-GQARAMNSVDFKPSR-------PFRIISGSDDNTVAIFEGPP 179 (611)
T ss_dssp --TSCEEEEEECCS--SCSEEEEETTTCCBCBCC--C-CCSSCEEEEEECSSS-------SCEEEEEETTSCEEEEETTT
T ss_pred --CCCEEEEEECCC--CceeEEEEeeCCCCccee--c-CCCCCceEEEECCCC-------CeEEEEEeCCCeEEEEECCC
Confidence 455565555432 122345555432211111 0 112233333332211 23477888999999999644
Q ss_pred HHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce-eeccc------ccCCcc
Q 003360 165 IERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL-LDFET------KLKDGS 236 (826)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~-~~~~~------~h~g~V 236 (826)
......+..|...|++++|+|+++.+++++ |++|++|+...... ..+.. +|.+.|
T Consensus 180 -----------------~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V 242 (611)
T 1nr0_A 180 -----------------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 242 (611)
T ss_dssp -----------------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred -----------------CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCE
Confidence 123345788999999999999999999998 99999997544332 22212 799999
Q ss_pred ee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecc---------------------------------ccccccccc
Q 003360 237 QS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK---------------------------------QQSEKDFSL 281 (826)
Q Consensus 237 ~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~---------------------------------~~~~~~~~~ 281 (826)
.+ |+|++++|+||+.|++|++||+............ ......+.+
T Consensus 243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g 322 (611)
T 1nr0_A 243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG 322 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence 98 9999999999999999999999443321111000 000112346
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC------ccccceEEEeecCCCCeEE-------------------
Q 003360 282 SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH------AIENSFLSFTGSKKGNSHI------------------- 336 (826)
Q Consensus 282 h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~------~~~~~~~~i~~s~~~~~~~------------------- 336 (826)
|...|++++|+|++++|++|+.||+|++||+.++.. .|...+..+.+++++....
T Consensus 323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~ 402 (611)
T 1nr0_A 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDS 402 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCT
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccc
Confidence 889999999999999999999999999999986632 2333444444432221100
Q ss_pred ---------------------------------EEE---EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 337 ---------------------------------IHS---VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 337 ---------------------------------~~~---~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
++. +....+...+.+++|+|+|++||+|+.||+|++||+.++.+
T Consensus 403 ~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~ 482 (611)
T 1nr0_A 403 SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV 482 (611)
T ss_dssp TSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE
T ss_pred cceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce
Confidence 000 11122445689999999999999999999999999988764
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC-CceEEeeeccCCCCCcceEEEEecCCCCccc
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN-GNMLSTNLIHPKKPSRALFMQILNGQDGLAR 459 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t-g~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~ 459 (826)
..... .+|...|++++|+| |+.+|++++.|++|++|+..+ ++++.... .......+.++.
T Consensus 483 ~~~~~--~~h~~~v~~v~fsp------dg~~las~s~d~~v~~w~~~~~~~~~~~~~-~~~H~~~V~~v~---------- 543 (611)
T 1nr0_A 483 SEVKT--IVHPAEITSVAFSN------NGAFLVATDQSRKVIPYSVANNFELAHTNS-WTFHTAKVACVS---------- 543 (611)
T ss_dssp EEEEE--EECSSCEEEEEECT------TSSEEEEEETTSCEEEEEGGGTTEESCCCC-CCCCSSCEEEEE----------
T ss_pred eeeec--cCCCCceEEEEECC------CCCEEEEEcCCCCEEEEEcCCCCceeeeee-eeecccceeEEE----------
Confidence 32122 36888999999999 699999999999999999987 54433200 000223333433
Q ss_pred CccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEe
Q 003360 460 GANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFT 538 (826)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~ 538 (826)
|++++.+++.++ |+.|+||++... ....+.....+....+....+ ++.+. |+....
T Consensus 544 ------------------fspdg~~lasgs~D~~v~lW~~~~~---~~~~~~~~~~h~~~~v~~v~f-s~d~~-l~s~~~ 600 (611)
T 1nr0_A 544 ------------------WSPDNVRLATGSLDNSVIVWNMNKP---SDHPIIIKGAHAMSSVNSVIW-LNETT-IVSAGQ 600 (611)
T ss_dssp ------------------ECTTSSEEEEEETTSCEEEEETTCT---TSCCEEETTSSTTSCEEEEEE-EETTE-EEEEET
T ss_pred ------------------ECCCCCEEEEEECCCcEEEEECCCc---ccccchhhccCcccCeeEEEE-cCCCE-EEEecC
Confidence 345656666665 568999999731 111101111110112222112 24455 888899
Q ss_pred eceEEEeccC
Q 003360 539 SGKFEIRSLP 548 (826)
Q Consensus 539 ~G~I~i~slP 548 (826)
||.|++|.+|
T Consensus 601 D~~i~lW~~~ 610 (611)
T 1nr0_A 601 DSNIKFWNVP 610 (611)
T ss_dssp TSCEEEEECC
T ss_pred CCCEEEEecc
Confidence 9999999875
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-32 Score=321.35 Aligned_cols=481 Identities=14% Similarity=0.157 Sum_probs=327.8
Q ss_pred ccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCC
Q 003360 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADG 85 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~ 85 (826)
...++.|+..|+|++| +|||++||+|+.||.|++||.... .+..+ ..|..+|..++|..
T Consensus 9 ~~~L~GH~~~V~~~a~-spdg~~las~~~d~~v~iWd~~~~-------------~~~~l----~gh~~~V~~l~fsp--- 67 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAF-SPDGQTIASASDDKTVKLWNRNGQ-------------LLQTL----TGHSSSVWGVAFSP--- 67 (577)
T ss_dssp EEEECCCSSCEEEEEE-CTTSSCEEEEETTSEEEEECTTSC-------------EEEEE----ECCSSCEEEEEECT---
T ss_pred eeEECCCCCcEEEEEE-CCCCCEEEEEeCCCEEEEEECCCC-------------EEEEE----eCCCCCEEEEEECC---
Confidence 3446678999999999 689999999999999999995321 11111 13556899998865
Q ss_pred CCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhH
Q 003360 86 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 165 (826)
Q Consensus 86 ~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i 165 (826)
++.++++++.+ ..+.+|..... .+.......+.+..+.+.| +...++.++.++.+.+|+....
T Consensus 68 -dg~~las~~~d----~~i~vWd~~~~----~~~~~~~~~~~v~~~~~s~--------d~~~l~~~~~d~~~~~~~~~~~ 130 (577)
T 2ymu_A 68 -DGQTIASASDD----KTVKLWNRNGQ----LLQTLTGHSSSVRGVAFSP--------DGQTIASASDDKTVKLWNRNGQ 130 (577)
T ss_dssp -TSSEEEEEETT----SCEEEEETTSC----EEEEECCCSSCEEEEEECT--------TSSEEEEEETTSCEEEEETTCC
T ss_pred -CCCEEEEEeCC----CEEEEEECCCC----EEEEEECCCCCEEEEEECC--------CCCEEEEEcCCCceeecccccc
Confidence 56777777663 35666664321 1111112233444444432 2356677777888888774331
Q ss_pred HHHHhhccCCC------C-----------------CCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC
Q 003360 166 ERYLLQYQSRS------P-----------------PSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS 221 (826)
Q Consensus 166 ~~~~~~~~~~~------~-----------------~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~ 221 (826)
........... . .............|...|.++.|+|+++.+++++ |+.+++|+..
T Consensus 131 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~ 210 (577)
T 2ymu_A 131 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred eeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC
Confidence 10000000000 0 0001112234567888999999999999999988 9999999876
Q ss_pred CCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 222 VPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 222 ~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
......+ .+|.+.|.+ |+|++++|++|+.||+|++||..+... .. +..|...|++++|+|+++.|+
T Consensus 211 ~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~---~~--------~~~~~~~v~~v~~~~d~~~l~ 278 (577)
T 2ymu_A 211 GQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL---QT--------LTGHSSSVNGVAFRPDGQTIA 278 (577)
T ss_dssp SCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE---EE--------ECCCSSCEEEEEECTTSSEEE
T ss_pred CcEEEEE-ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEE---EE--------EecCCCCEEEEEEcCCCCEEE
Confidence 5444444 779999988 999999999999999999999866552 11 246788999999999999999
Q ss_pred EEeCCCcEEEEEeCCCC----CccccceEEEeecCCCCeEE---------EEE------EEEeeccCCeEEEEEccCCCE
Q 003360 300 SGDQSGMVRIFKLKYEP----HAIENSFLSFTGSKKGNSHI---------IHS------VKVMKINGSIISLNMNRNSQH 360 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~----~~~~~~~~~i~~s~~~~~~~---------~~~------~~~~~~~~~V~~l~~s~~g~~ 360 (826)
+++.|+.|++|+..... ..+...+..+.+++++.... ++. .....+...|++++|+|+|.+
T Consensus 279 ~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 358 (577)
T 2ymu_A 279 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQT 358 (577)
T ss_dssp EEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCE
Confidence 99999999999976441 23455677777777664422 221 223345678999999999999
Q ss_pred EEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCC
Q 003360 361 LAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPK 440 (826)
Q Consensus 361 lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~ 440 (826)
|++|+.||.|++||. ++.++... ..|...|++++|+| |+.+|++++.|+.|++||. +++.+.++..|..
T Consensus 359 l~~~~~dg~v~~~~~-~~~~~~~~---~~~~~~v~~~~~s~------dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~ 427 (577)
T 2ymu_A 359 IASASDDKTVKLWNR-NGQLLQTL---TGHSSSVRGVAFSP------DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 427 (577)
T ss_dssp EEEEETTSEEEEEET-TCCEEEEE---ECCSSCEEEEEECT------TSSCEEEEETTSEEEEECT-TCCEEEEEECCSS
T ss_pred EEEEeCCCEEEEEcC-CCCEEEEe---cCCCCCeEEEEECC------CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCC
Confidence 999999999999996 45555443 36888999999998 6999999999999999996 4788777655432
Q ss_pred CCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEeccccccccceeeeeeecCCCCc
Q 003360 441 KPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSHAVQGVKKVLYKKKFHSSSC 519 (826)
Q Consensus 441 ~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~g~~k~~~k~~~~~~~c 519 (826)
.+.++. +++++.++++++ ++.+++|++.. +.+.....+...
T Consensus 428 ---~v~~~~----------------------------~s~d~~~l~~~~~d~~v~~w~~~~------~~~~~~~~~~~~- 469 (577)
T 2ymu_A 428 ---SVWGVA----------------------------FSPDDQTIASASDDKTVKLWNRNG------QLLQTLTGHSSS- 469 (577)
T ss_dssp ---CEEEEE----------------------------ECTTSSEEEEEETTSEEEEEETTS------CEEEEEECCSSC-
T ss_pred ---CeEEEE----------------------------ECCCCCEEEEEcCCCEEEEEECCC------CEEEEEcCCCCC-
Confidence 233332 234555666655 56899999752 222222222111
Q ss_pred eeeEeeeeCCceEEEEEEeeceEEEeccCCccccccc-----cccceeecCCCCCCCcccceeccCCCcEEEEcCCee
Q 003360 520 CWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKET-----SIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQE 592 (826)
Q Consensus 520 ~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~-----sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g~~e 592 (826)
. ..+..++.+..|+....+|.|++++.. .+.+... .+.++.|+ +++...++.+.||.|.+|+-+.+
T Consensus 470 v-~~~~~spd~~~las~~~d~~i~iw~~~-~~~~~~~~~h~~~v~~l~~s-----~dg~~l~s~~~dg~v~lwd~~~~ 540 (577)
T 2ymu_A 470 V-RGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFS-----PDGQTIASASDDKTVKLWNRNGQ 540 (577)
T ss_dssp E-EEEEECTTSCEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEEC-----TTSSCEEEEETTSEEEEECTTSC
T ss_pred E-EEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEEEEEeCCCCCEEEEEEc-----CCCCEEEEEECcCEEEEEeCCCC
Confidence 1 111122677888899999999999854 4544432 34456776 46677788888888888875444
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.9e-33 Score=328.69 Aligned_cols=469 Identities=14% Similarity=0.134 Sum_probs=300.8
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceE
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 90 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~l 90 (826)
.+...+.+++| +|||.+||++. ++.|++||+.++..... ...|..+|..++|.. +|.+
T Consensus 16 ~~~g~~~~~~~-spdg~~l~~~~-~~~v~l~~~~~~~~~~~----------------~~~h~~~v~~~~~sp----dg~~ 73 (611)
T 1nr0_A 16 TARGTAVVLGN-TPAGDKIQYCN-GTSVYTVPVGSLTDTEI----------------YTEHSHQTTVAKTSP----SGYY 73 (611)
T ss_dssp CCTTCCCCCEE-CTTSSEEEEEE-TTEEEEEETTCSSCCEE----------------ECCCSSCEEEEEECT----TSSE
T ss_pred cccCceeEEee-CCCCCEEEeCC-CCEEEEecCCCcccCeE----------------ecCCCCceEEEEECC----CCcE
Confidence 34667889998 68999999997 67999999986521111 123556799888875 6788
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEEEee-cCCCceeeEEEecCCCCCCCCCCceEEEeccC----ccEEEecchhH
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTKLAL-PLSEPCIDMEIISSSSDPNKPKQDSFLLLGKS----GHFYAFDDCQI 165 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l-~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~----G~l~~~d~~~i 165 (826)
++.|+.+ ..+.+|.+...... ....+ ...+.+.++.+-|.. ..+++.+.. |.+.+||...
T Consensus 74 lasg~~d----~~v~lWd~~~~~~~--~~~~~~~~~~~v~~v~fs~dg--------~~l~~~~~~~~~~~~v~~wd~~~- 138 (611)
T 1nr0_A 74 CASGDVH----GNVRIWDTTQTTHI--LKTTIPVFSGPVKDISWDSES--------KRIAAVGEGRERFGHVFLFDTGT- 138 (611)
T ss_dssp EEEEETT----SEEEEEESSSTTCC--EEEEEECSSSCEEEEEECTTS--------CEEEEEECCSSCSEEEEETTTCC-
T ss_pred EEEEeCC----CCEEEeECCCCcce--eeEeecccCCceEEEEECCCC--------CEEEEEECCCCceeEEEEeeCCC-
Confidence 8888774 35666665432221 11122 234556665554322 344444432 5788998543
Q ss_pred HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCe-EEEec-CCcEEEeccCCCceeecccccCCccee--eCC
Q 003360 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF-ILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSK 241 (826)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~ 241 (826)
....+..|...|++++|+|+++. +++++ |+++++|+...........+|.+.|.+ |+|
T Consensus 139 ------------------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp 200 (611)
T 1nr0_A 139 ------------------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200 (611)
T ss_dssp ------------------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT
T ss_pred ------------------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC
Confidence 11235789999999999999974 88888 999999976543333233789999999 999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc--
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI-- 319 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~-- 319 (826)
++++|++|+.||+|++||...... +..+... ......|...|++++|+|++++|++|+.|++|++||+.++....
T Consensus 201 dg~~las~s~D~~i~lwd~~~g~~--~~~~~~~-~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 201 DGSLFASTGGDGTIVLYNGVDGTK--TGVFEDD-SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCE--EEECBCT-TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCcEEEEECCCCcE--eeeeccc-cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 999999999999999999843332 1222110 01112688999999999999999999999999999998653211
Q ss_pred ------ccceEEEe--------ecCCCCeEEEEE-------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC
Q 003360 320 ------ENSFLSFT--------GSKKGNSHIIHS-------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP 378 (826)
Q Consensus 320 ------~~~~~~i~--------~s~~~~~~~~~~-------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~ 378 (826)
......+. .+.++.. .++. .....|...|++++|+|+|++|++|+.||+|++||+.++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i-~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 278 PVGTRIEDQQLGIIWTKQALVSISANGFI-NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp ECCSSGGGCEEEEEECSSCEEEEETTCCE-EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cCCCCccceeEEEEEcCCEEEEEeCCCcE-EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 01111111 1122211 1111 223457788999999999999999999999999999887
Q ss_pred eeEEeeecccCCCCC-----------------------------------------------------------------
Q 003360 379 TVLYQKHIASDISSG----------------------------------------------------------------- 393 (826)
Q Consensus 379 ~~l~~~~~~~~~~~~----------------------------------------------------------------- 393 (826)
.+.... ...|...
T Consensus 357 ~~~~~~--~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v 434 (611)
T 1nr0_A 357 ISNRVF--PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 434 (611)
T ss_dssp CEEECS--SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEE
T ss_pred ceeeec--ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceE
Confidence 654221 1123333
Q ss_pred ----------------eeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee-eccCCCCCcceEEEEecCCCC
Q 003360 394 ----------------IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN-LIHPKKPSRALFMQILNGQDG 456 (826)
Q Consensus 394 ----------------V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~-~~~~~~~~~~lsi~~l~~~~~ 456 (826)
+.+++|+| |+.+|++|+.|++|++||..++...... ..|. ..+.++.
T Consensus 435 ~~~~~~~~~~~~~~~~v~~va~sp------dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~---~~v~~v~------- 498 (611)
T 1nr0_A 435 AIYSHGKLTEVPISYNSSCVALSN------DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP---AEITSVA------- 498 (611)
T ss_dssp EEEETTEEEEEECSSCEEEEEECT------TSCEEEEEETTSEEEEEEEETTEEEEEEEEECS---SCEEEEE-------
T ss_pred EEEeCCceeeeecCCCceEEEEeC------CCCEEEEeCCCCeEEEEEccCCceeeeeccCCC---CceEEEE-------
Confidence 44455555 5777788888888888887655432111 1221 2223332
Q ss_pred cccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEeccccccccceeeee--eecCCCCceeeEeeeeCCceEE
Q 003360 457 LARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSHAVQGVKKVLYK--KKFHSSSCCWASTFYSGSDVGL 533 (826)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~g~~k~~~k--~~~~~~~c~~~~~~~~~~~~~l 533 (826)
|++++.++++++ ++.+++|++... .+.+.. ...+ ...++ ++.-++.+..|
T Consensus 499 ---------------------fspdg~~las~s~d~~v~~w~~~~~----~~~~~~~~~~~H-~~~V~-~v~fspdg~~l 551 (611)
T 1nr0_A 499 ---------------------FSNNGAFLVATDQSRKVIPYSVANN----FELAHTNSWTFH-TAKVA-CVSWSPDNVRL 551 (611)
T ss_dssp ---------------------ECTTSSEEEEEETTSCEEEEEGGGT----TEESCCCCCCCC-SSCEE-EEEECTTSSEE
T ss_pred ---------------------ECCCCCEEEEEcCCCCEEEEEcCCC----Cceeeeeeeeec-cccee-EEEECCCCCEE
Confidence 445656666655 568999998731 111111 0001 11111 11112678889
Q ss_pred EEEEeeceEEEeccCCccc-c-c------cccccceeecCCCCCCCcccceeccCCCcEEEEcC
Q 003360 534 MLLFTSGKFEIRSLPELSL-L-K------ETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNG 589 (826)
Q Consensus 534 v~~~~~G~I~i~slP~L~~-l-~------~~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g 589 (826)
+....||.|++|.+..... + . ...+.++.|. +++. .++.+.||.|.+|+-
T Consensus 552 asgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs-----~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-----NETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE-----ETTE-EEEEETTSCEEEEEC
T ss_pred EEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEc-----CCCE-EEEecCCCCEEEEec
Confidence 9999999999999875431 1 1 2235567777 3444 888888999988875
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.1e-31 Score=283.10 Aligned_cols=243 Identities=11% Similarity=0.129 Sum_probs=192.3
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC-c
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP-L 264 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~-~ 264 (826)
..|..+|++++|+++++.+++++ |+.|++|+...........+|.+.|.+ |+|++++|++|+.||+|++||+... .
T Consensus 52 ~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~ 131 (304)
T 2ynn_A 52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (304)
T ss_dssp ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE
T ss_pred eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc
Confidence 34566789999999999999998 999999986654443333789999999 9999999999999999999999433 3
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
. . ..+..|...|++++|+| ++..|++|+.||+|++||++..... . ....
T Consensus 132 ~--~--------~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----------------~----~~~~ 181 (304)
T 2ynn_A 132 L--E--------QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----------------F----TLTT 181 (304)
T ss_dssp E--E--------EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS----------------E----EEEC
T ss_pred h--h--------hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc----------------c----eecc
Confidence 1 1 12346889999999999 6789999999999999999744321 0 1122
Q ss_pred eccCCeEEEEEcc--CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 344 KINGSIISLNMNR--NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 344 ~~~~~V~~l~~s~--~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
.+...|..++|+| ++.+|++|+.||+|++||+++++++.... +|...|.++.|+| ++.+|++|+.||+|
T Consensus 182 ~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~---~h~~~v~~~~~~p------~~~~l~s~s~Dg~i 252 (304)
T 2ynn_A 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHP------TLPIIISGSEDGTL 252 (304)
T ss_dssp CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECS------SSSEEEEEETTSCE
T ss_pred CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC---CCCCCEEEEEECC------CCCEEEEEcCCCeE
Confidence 3456789999986 77899999999999999999999886554 7889999999999 58999999999999
Q ss_pred EEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 422 LVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 422 ~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
++||..+++++.++..+.. .+.++.+.. .....++++++++.+.+|++.
T Consensus 253 ~iWd~~~~~~~~~~~~~~~---~~~~~~~~~--------------------------~~~~~~~asg~~~g~~~~~~~ 301 (304)
T 2ynn_A 253 KIWNSSTYKVEKTLNVGLE---RSWCIATHP--------------------------TGRKNYIASGFDNGFTVLSLG 301 (304)
T ss_dssp EEEETTTCCEEEEECCSSS---SEEEEEECT--------------------------TCGGGCEEEEETTEEEEEECC
T ss_pred EEEECCCCceeeeccCCCc---cEEEEEECC--------------------------CCCceEEEEecCCceEEEEec
Confidence 9999999999988754432 333443321 111236888889999999886
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.1e-31 Score=289.19 Aligned_cols=286 Identities=13% Similarity=0.177 Sum_probs=215.8
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 86 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~ 86 (826)
.++..|...|.+++| +|+|.+||+|+.||.|++||+.++..... + ..+..+|..+.|..
T Consensus 49 ~~l~gH~~~v~~~~~-s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~------------~----~~~~~~v~~~~~s~---- 107 (340)
T 1got_B 49 RTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDSYTTNKVHA------------I----PLRSSWVMTCAYAP---- 107 (340)
T ss_dssp EEECCCSSCEEEEEE-CTTSSEEEEEETTTEEEEEETTTCCEEEE------------E----ECSSSCEEEEEECT----
T ss_pred eeecCCCCceEEEEE-CCCCCEEEEEeCCCcEEEEECCCCCcceE------------e----ecCCccEEEEEECC----
Confidence 345567889999999 58999999999999999999887511110 0 01223455555433
Q ss_pred CceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHH
Q 003360 87 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 166 (826)
Q Consensus 87 ~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~ 166 (826)
++.+ ++.++.+|.+.+||...-
T Consensus 108 ~~~~---------------------------------------------------------l~s~~~d~~v~iw~~~~~- 129 (340)
T 1got_B 108 SGNY---------------------------------------------------------VACGGLDNICSIYNLKTR- 129 (340)
T ss_dssp TSSE---------------------------------------------------------EEEEETTCEEEEEETTTC-
T ss_pred CCCE---------------------------------------------------------EEEEeCCCeEEEEECccC-
Confidence 2223 344445556666665430
Q ss_pred HHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCC
Q 003360 167 RYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVK 243 (826)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~ 243 (826)
. ........+..|...|+++.|++++. +++++ |+.|++|+...........+|.+.|.+ |+|++
T Consensus 130 ------~------~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 130 ------E------GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp ------S------BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred ------C------CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence 0 01112344678999999999999887 55655 999999986654443333689999998 99999
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccce
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~ 323 (826)
+++++|+.||+|++||+..... +. .+..|...|++++|+|++.+|++|+.||+|++||++....
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~--~~--------~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~------ 260 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMC--RQ--------TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE------ 260 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSE--EE--------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------
T ss_pred CEEEEEeCCCcEEEEECCCCee--EE--------EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE------
Confidence 9999999999999999954432 11 2346888999999999999999999999999999984321
Q ss_pred EEEeecCCCCeEEEEEEEEeec---cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKI---NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~---~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
+....+ ...|++++|+|+|.+|++|+.||.|++||+.++..+... .+|..+|.+++|+
T Consensus 261 ----------------~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~---~~h~~~v~~~~~s 321 (340)
T 1got_B 261 ----------------LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL---AGHDNRVSCLGVT 321 (340)
T ss_dssp ----------------EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEEC
T ss_pred ----------------EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe---ecCCCcEEEEEEc
Confidence 111122 346999999999999999999999999999998877544 4789999999999
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEE
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
+ ++.+|++|+.|++|++||
T Consensus 322 ~------dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 322 D------DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp T------TSSCEEEEETTSCEEEEC
T ss_pred C------CCCEEEEEcCCccEEecC
Confidence 9 699999999999999997
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2e-31 Score=299.68 Aligned_cols=284 Identities=12% Similarity=0.161 Sum_probs=220.9
Q ss_pred cccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCc
Q 003360 9 VYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKAS 88 (826)
Q Consensus 9 ~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g 88 (826)
+..|...|++++| +|++.+||+|+.||.|++||+.++...+. ...+..+|..+.|.. ++
T Consensus 104 l~gh~~~V~~~~~-~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~----------------l~~h~~~V~~v~~~~----~~ 162 (410)
T 1vyh_C 104 LSGHRSPVTRVIF-HPVFSVMVSASEDATIKVWDYETGDFERT----------------LKGHTDSVQDISFDH----SG 162 (410)
T ss_dssp EECCSSCEEEEEE-CSSSSEEEEEESSSCEEEEETTTCCCCEE----------------ECCCSSCEEEEEECT----TS
T ss_pred ecccCCcEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCcEEEE----------------EeccCCcEEEEEEcC----CC
Confidence 3456779999999 57999999999999999999988622111 112344566666543 22
Q ss_pred eEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHH
Q 003360 89 RLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERY 168 (826)
Q Consensus 89 ~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~ 168 (826)
.+ ++.++.+|.+.+||....
T Consensus 163 ~~---------------------------------------------------------l~sgs~D~~i~iwd~~~~--- 182 (410)
T 1vyh_C 163 KL---------------------------------------------------------LASCSADMTIKLWDFQGF--- 182 (410)
T ss_dssp SE---------------------------------------------------------EEEEETTSCCCEEETTSS---
T ss_pred CE---------------------------------------------------------EEEEeCCCeEEEEeCCCC---
Confidence 33 344445566667776441
Q ss_pred HhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCE
Q 003360 169 LLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNL 245 (826)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~ 245 (826)
.....+..|...|++++|+|++..+++++ |++|++|+...........+|...|.+ +++++++
T Consensus 183 --------------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~ 248 (410)
T 1vyh_C 183 --------------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248 (410)
T ss_dssp --------------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred --------------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCE
Confidence 12234578999999999999999999998 999999987654433333689999988 9999999
Q ss_pred EEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC--------------------CCEEEEEeCCC
Q 003360 246 FITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--------------------SRVLVSGDQSG 305 (826)
Q Consensus 246 l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--------------------~~~Lasgs~dg 305 (826)
|++|+.||+|++||+..... .. .+..|...|.+++|+|+ +.+|++|+.||
T Consensus 249 l~s~s~D~~v~vwd~~~~~~--~~--------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 249 IASCSNDQTVRVWVVATKEC--KA--------ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp EEEEETTSCEEEEETTTCCE--EE--------EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EEEEcCCCeEEEEECCCCce--ee--------EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 99999999999999954432 11 23467889999999996 67899999999
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
+|++||++++.. . ..+..|...|++++|+|+|.+|++|+.||+|++||+.+++++...
T Consensus 319 ~i~iwd~~~~~~-----------------~----~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~- 376 (410)
T 1vyh_C 319 TIKMWDVSTGMC-----------------L----MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL- 376 (410)
T ss_dssp EEEEEETTTTEE-----------------E----EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-
T ss_pred eEEEEECCCCce-----------------E----EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-
Confidence 999999984322 1 334457888999999999999999999999999999999887555
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
.+|...|++++|+| ++.+|++|+.|++|++|+.+
T Consensus 377 --~~h~~~v~~l~~~~------~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 377 --NAHEHFVTSLDFHK------TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp --ECCSSCEEEEEECS------SSSCEEEEETTSEEEEEC--
T ss_pred --cCCCCcEEEEEEcC------CCCEEEEEeCCCcEEEEeCC
Confidence 37888999999999 58999999999999999863
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-31 Score=288.42 Aligned_cols=291 Identities=11% Similarity=0.141 Sum_probs=220.1
Q ss_pred cccccccccccceEEEecC---CCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEe
Q 003360 5 VLQSVYHETKQVTSACWAC---PIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWV 81 (826)
Q Consensus 5 ~~~~~~~~~~~i~slcW~~---p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~ 81 (826)
+..+...|...|.+++|.. +++.+||+|+.||.|++||+.+.... +......+..+|..+.|.
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~--------------~~~~l~gh~~~v~~~~~~ 89 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD--------------LQWSLEGHQLGVVSVDIS 89 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE--------------EEEEECCCSSCEEEEEEC
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee--------------eeeeeccCCCCEEEEEEC
Confidence 3455566788999999963 25789999999999999998653100 000011223334444332
Q ss_pred eeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEec
Q 003360 82 YADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFD 161 (826)
Q Consensus 82 ~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d 161 (826)
. ....++..+.+|.+.+||
T Consensus 90 ~-------------------------------------------------------------~~~~l~s~s~D~~i~lWd 108 (321)
T 3ow8_A 90 H-------------------------------------------------------------TLPIAASSSLDAHIRLWD 108 (321)
T ss_dssp S-------------------------------------------------------------SSSEEEEEETTSEEEEEE
T ss_pred C-------------------------------------------------------------CCCEEEEEeCCCcEEEEE
Confidence 2 112345556677888888
Q ss_pred chhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--
Q 003360 162 DCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS-- 238 (826)
Q Consensus 162 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~-- 238 (826)
...- .....+..|...+.+++|+|+++.+++++ |+.+++|+............|...|.+
T Consensus 109 ~~~~-----------------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 109 LENG-----------------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA 171 (321)
T ss_dssp TTTT-----------------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred CCCC-----------------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence 7551 12334567778899999999999999999 999999976554333222567777877
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
|+|++++|++|+.||+|++||+..... +.. +..|..+|++++|+|++++|++|+.||+|++||++....
T Consensus 172 ~spdg~~lasg~~dg~i~iwd~~~~~~--~~~--------~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~- 240 (321)
T 3ow8_A 172 YSPDGKYLASGAIDGIINIFDIATGKL--LHT--------LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL- 240 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEE--EEE--------ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE-
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCcE--EEE--------EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce-
Confidence 999999999999999999999955442 222 246788999999999999999999999999999984322
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEE
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 398 (826)
. ..+..|...|++++|+|++.+|++|+.||+|+|||+.+++++.++ .+|...|.+++
T Consensus 241 ----------------~----~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~---~~h~~~v~~v~ 297 (321)
T 3ow8_A 241 ----------------A----GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF---FDHQDQVWGVK 297 (321)
T ss_dssp ----------------E----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEE
T ss_pred ----------------e----EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE---cCCCCcEEEEE
Confidence 1 334457788999999999999999999999999999999988655 37889999999
Q ss_pred EeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 399 FETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
|++ ++.+|++++.|++|++||..
T Consensus 298 ~s~------~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 298 YNG------NGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECT------TSSEEEEEETTCCEEEEECC
T ss_pred ECC------CCCEEEEEeCCCeEEEEeCC
Confidence 998 68999999999999999963
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4e-31 Score=291.59 Aligned_cols=294 Identities=17% Similarity=0.177 Sum_probs=213.5
Q ss_pred ccccccceEEEecCCCCCEEEEEEe------cCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeee
Q 003360 10 YHETKQVTSACWACPIGSKVAVGYS------NGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYA 83 (826)
Q Consensus 10 ~~~~~~i~slcW~~p~g~~latg~~------DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~ 83 (826)
..|++.|.+++| +|||++||+|+. ||+|++|+..++..... +......+...|..++|..
T Consensus 39 ~~H~~~V~~v~f-SpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~------------~~~~~~~~~~~V~~~~~s~- 104 (357)
T 4g56_B 39 ACMEVQIGAVRY-RRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES------------LCTAGVQTEAGVTDVAWVS- 104 (357)
T ss_dssp -CCCSEEEEEEE-CSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG------------GCSEEEECSSCEEEEEEET-
T ss_pred ccccCCEEEEEE-CCCCCEEEEEcCCCCccccCeEEEEECCCCCccee------------EecccCCCCCCEEEEEEcC-
Confidence 346889999999 789999999998 78899998877521111 1111112233455555543
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
++. +++.+.+|.|.+||..
T Consensus 105 ---d~~----------------------------------------------------------~l~~s~dg~v~lWd~~ 123 (357)
T 4g56_B 105 ---EKG----------------------------------------------------------ILVASDSGAVELWEIL 123 (357)
T ss_dssp ---TTE----------------------------------------------------------EEEEETTSCEEEC---
T ss_pred ---CCC----------------------------------------------------------EEEEECCCEEEEeecc
Confidence 122 3444556677788765
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eC
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HS 240 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s 240 (826)
.-+. ..........|...|++++|+|+++.+++++ |+.|++|+...........+|.+.|.+ |+
T Consensus 124 ~~~~-------------~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s 190 (357)
T 4g56_B 124 EKES-------------LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC 190 (357)
T ss_dssp ------------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred ccce-------------eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 5110 0112233467999999999999999999998 999999987655444444779999998 88
Q ss_pred CCCC-EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCc
Q 003360 241 KVKN-LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 241 ~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
+++. ++++++.||+|++||+..... +..+ .+..|...|++++|+|++ .+|++|+.|+.|++||++.....
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~~~--~~~~------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~ 262 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKPKP--ATRI------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA 262 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSSSC--BCBC------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC
T ss_pred cCCCceeeeeccCCceEEEECCCCce--eeee------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe
Confidence 8875 899999999999999944331 1111 123456789999999974 68999999999999999854321
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEE
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSL 397 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl 397 (826)
..+..+...|++++|+|++ .+||+|+.||+|+|||+++++++... +|...|+++
T Consensus 263 ---------------------~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~----~H~~~V~~v 317 (357)
T 4g56_B 263 ---------------------QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL----SHRDFVTGV 317 (357)
T ss_dssp ---------------------EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC----CCSSCEEEE
T ss_pred ---------------------EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC----CCCCCEEEE
Confidence 2344567889999999987 57999999999999999999887332 689999999
Q ss_pred EEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 398 QFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 398 ~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
+|+|. |+.+|++|+.|++|++|++.+.
T Consensus 318 afsP~-----d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 318 AWSPL-----DHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EECSS-----STTEEEEEETTSCEEEEECC--
T ss_pred EEeCC-----CCCEEEEEcCCCeEEEEECCCC
Confidence 99985 6889999999999999998753
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.4e-30 Score=325.93 Aligned_cols=465 Identities=12% Similarity=0.114 Sum_probs=312.7
Q ss_pred ccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCce
Q 003360 10 YHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASR 89 (826)
Q Consensus 10 ~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ 89 (826)
..|...|++++| +|+|++||+|+.||.|++||+.++... ..+ ..+..+|..+.|+. ++.
T Consensus 612 ~~h~~~v~~~~~-s~~~~~l~s~~~d~~i~vw~~~~~~~~------------~~~----~~h~~~v~~~~~s~----~~~ 670 (1249)
T 3sfz_A 612 RPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETGEKL------------LDI----KAHEDEVLCCAFSS----DDS 670 (1249)
T ss_dssp CCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTCCEE------------EEE----CCCSSCEEEEEECT----TSS
T ss_pred ecccccEEEEEE-CCCCCEEEEEeCCCeEEEEECCCCCEE------------EEe----ccCCCCEEEEEEec----CCC
Confidence 346788999999 689999999999999999999886211 111 13456899999975 566
Q ss_pred EEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHH
Q 003360 90 LYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYL 169 (826)
Q Consensus 90 lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~ 169 (826)
++++|+.+ ..+.+|.+........ +. ...+.+..+.+.+. .+...++.++.+|.+.+||...
T Consensus 671 ~l~s~~~d----~~v~vwd~~~~~~~~~--~~-~~~~~v~~~~~~~~------~~~~~l~sg~~d~~v~vwd~~~----- 732 (1249)
T 3sfz_A 671 YIATCSAD----KKVKIWDSATGKLVHT--YD-EHSEQVNCCHFTNK------SNHLLLATGSNDFFLKLWDLNQ----- 732 (1249)
T ss_dssp EEEEEETT----SEEEEEETTTCCEEEE--EE-CCSSCEEEEEECSS------SSCCEEEEEETTSCEEEEETTS-----
T ss_pred EEEEEeCC----CeEEEEECCCCceEEE--Ec-CCCCcEEEEEEecC------CCceEEEEEeCCCeEEEEECCC-----
Confidence 77777653 3566666654332221 11 23344444444332 1234677788899999999865
Q ss_pred hhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce-----------------------
Q 003360 170 LQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL----------------------- 225 (826)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~----------------------- 225 (826)
......+..|...|++++|+|+++.+++++ |+.|++|+......
T Consensus 733 ------------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1249)
T 3sfz_A 733 ------------KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800 (1249)
T ss_dssp ------------SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred ------------cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccce
Confidence 113345678999999999999999999998 99999996432110
Q ss_pred --------------------------------eecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeec
Q 003360 226 --------------------------------LDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL 271 (826)
Q Consensus 226 --------------------------------~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l 271 (826)
..+..+|.+.|.+ |+|+++++++|+.||+|++||+..... +.
T Consensus 801 v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~--~~-- 876 (1249)
T 3sfz_A 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK--VA-- 876 (1249)
T ss_dssp BCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE--EE--
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce--ee--
Confidence 0011256777777 999999999999999999999955442 12
Q ss_pred ccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcccc---ceEEEeecCC----------CCeEEEE
Q 003360 272 KQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN---SFLSFTGSKK----------GNSHIIH 338 (826)
Q Consensus 272 ~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~---~~~~i~~s~~----------~~~~~~~ 338 (826)
.+..|...|++++|+|++..|++++.||.|++|++......... ......+..+ .......
T Consensus 877 ------~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1249)
T 3sfz_A 877 ------DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950 (1249)
T ss_dssp ------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred ------ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence 23468899999999999999999999999999998643111000 0001111111 1010000
Q ss_pred E---EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 339 S---VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 339 ~---~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
. .........|++++|+|++.++++|+.||.|++||+.++..+... .+|...|++++|++ ++.+|+++
T Consensus 951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~---~~h~~~v~~l~~s~------dg~~l~s~ 1021 (1249)
T 3sfz_A 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG---VGHKKAVRHIQFTA------DGKTLISS 1021 (1249)
T ss_dssp ESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC---CCCSSCCCCEEECS------SSSCEEEE
T ss_pred cCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec---ccCCCceEEEEECC------CCCEEEEE
Confidence 0 111223567999999999999999999999999999999877443 47889999999999 69999999
Q ss_pred ECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEE
Q 003360 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACA 495 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv 495 (826)
+.||.|++||..+++.+... .....+.++.+. +++.++..+.++.+++
T Consensus 1022 ~~dg~i~vwd~~~~~~~~~~----~~~~~v~~~~~~----------------------------~~~~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 1022 SEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRLL----------------------------QDSRLLSWSFDGTVKV 1069 (1249)
T ss_dssp CSSSBEEEEETTTTEEECCB----CCSSCEEEEEEC----------------------------SSSEEEEEESSSEEEE
T ss_pred cCCCEEEEEECCCCceEEEe----cCCCcEEEEEEc----------------------------CCCcEEEEECCCcEEE
Confidence 99999999999998776321 222333333332 2345777777889999
Q ss_pred EeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCcccccccc-----ccceeecCCCCCC
Q 003360 496 YSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETS-----IRGFVYLTPKPNS 570 (826)
Q Consensus 496 ~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~s-----l~~~~~~~~~~~~ 570 (826)
|++.. .+.+.....+ ...... +..++.+..+++...+|.|++|++...+.+.... +.++.|+ +
T Consensus 1070 wd~~~-----~~~~~~~~~~-~~~v~~-~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s-----~ 1137 (1249)
T 3sfz_A 1070 WNVIT-----GRIERDFTCH-QGTVLS-CAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-----L 1137 (1249)
T ss_dssp EETTT-----TCCCEEEECC-SSCCCC-EEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEEC-----S
T ss_pred EECCC-----CceeEEEccc-CCcEEE-EEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEEC-----C
Confidence 99973 2233332222 111111 1112566778888899999999998877766532 2234444 3
Q ss_pred CcccceeccCCCcEEEEc
Q 003360 571 LSNTLMCSSWDGELIMVN 588 (826)
Q Consensus 571 ~~~~~~~~s~~G~i~~~~ 588 (826)
++...++.+.||.+.+|+
T Consensus 1138 dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1138 DGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp SSSEEEEEETTSCCCEEE
T ss_pred CCCEEEEEeCCCEEEEEE
Confidence 444555555555555554
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.5e-31 Score=287.04 Aligned_cols=232 Identities=16% Similarity=0.173 Sum_probs=178.9
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~ 225 (826)
.+++++.+|.|.+||..+- + ........+..|...|++++|+|+++++++++ |++|++|+......
T Consensus 95 ~l~~~s~dg~v~lWd~~~~-------~------~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 95 GILVASDSGAVELWELDEN-------E------TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV 161 (344)
T ss_dssp EEEEEETTSEEEEEEECTT-------S------SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred eEEEEECCCEEEEEeccCC-------C------ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 3566677788888887651 0 01122334568999999999999999999998 99999998765544
Q ss_pred eecccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEE
Q 003360 226 LDFETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSG 301 (826)
Q Consensus 226 ~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasg 301 (826)
.....+|.+.|.+ |++++ .+|++|+.||+|++||+..... +..+. ...+...|++++|+|+ +.+|++|
T Consensus 162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~------~~~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIG------CSAPGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----------CCCEEEEEECSSCTTEEEEE
T ss_pred EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce--eeeee------cceeeccceeeeecCCCCcceEEe
Confidence 4444789999998 89887 4899999999999999944432 12222 1245568999999995 5789999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCee
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~ 380 (826)
+.||+|+|||++++... ..+..|...|++++|+|++ .+||+|+.||+|+|||+.++++
T Consensus 234 ~~dg~v~~wd~~~~~~~---------------------~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~ 292 (344)
T 4gqb_B 234 DENGTVSLVDTKSTSCV---------------------LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL 292 (344)
T ss_dssp ETTSEEEEEESCC--CC---------------------EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred ccCCcEEEEECCCCcEE---------------------EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence 99999999999854331 3345678889999999998 5799999999999999999887
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
+. ..+|...|++++|+|. +..+|++|+.|++|++|++.+.
T Consensus 293 ~~----~~~H~~~V~~v~~sp~-----~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 293 FR----SQAHRDFVRDATWSPL-----NHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EE----ECCCSSCEEEEEECSS-----STTEEEEEETTSCEEEEECCC-
T ss_pred EE----EcCCCCCEEEEEEeCC-----CCeEEEEEcCCCeEEEEECCCC
Confidence 62 2479999999999983 2346779999999999999864
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-30 Score=286.37 Aligned_cols=321 Identities=11% Similarity=0.122 Sum_probs=220.8
Q ss_pred ccccccccc-cceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeC
Q 003360 6 LQSVYHETK-QVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYAD 84 (826)
Q Consensus 6 ~~~~~~~~~-~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~ 84 (826)
++++..|.. +|.+++| +|+|++||+|+.||.|++||+.++... .+.. ....+..+|..++|..
T Consensus 8 ~~~~~~h~~~~v~~l~~-sp~g~~las~~~D~~i~iw~~~~~~~~------------~~~~-~~~~h~~~v~~~~~sp-- 71 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAW-NPAGTLLASCGGDRRIRIWGTEGDSWI------------CKSV-LSEGHQRTVRKVAWSP-- 71 (345)
T ss_dssp EEEECCSTTSCEEEEEE-CTTSSCEEEEETTSCEEEEEEETTEEE------------EEEE-ECSSCSSCEEEEEECT--
T ss_pred eeeecCCCCCcEEEEEE-CCCCCEEEEEcCCCeEEEEEcCCCcce------------eeee-eccccCCcEEEEEECC--
Confidence 444445555 8999999 589999999999999999998764100 0000 0123445677776654
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchh
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~ 164 (826)
++.++++ ++.+|.+.+||...
T Consensus 72 --~g~~l~s---------------------------------------------------------~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 72 --CGNYLAS---------------------------------------------------------ASFDATTCIWKKNQ 92 (345)
T ss_dssp --TSSEEEE---------------------------------------------------------EETTSCEEEEEECC
T ss_pred --CCCEEEE---------------------------------------------------------EECCCcEEEEEccC
Confidence 2333333 34445556665433
Q ss_pred HHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc---eeecccccCCccee--
Q 003360 165 IERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP---LLDFETKLKDGSQS-- 238 (826)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~---~~~~~~~h~g~V~~-- 238 (826)
- .......+..|...|++++|+|+++.+++++ |+.|++|+..... ......+|...|.+
T Consensus 93 ~---------------~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (345)
T 3fm0_A 93 D---------------DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV 157 (345)
T ss_dssp C----------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred C---------------CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence 0 1112345678999999999999999999998 9999999754322 12223678999988
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
|+|++++|++|+.||+|++||........... +..|...|++|+|+|++++|++|+.||+|+||+.......
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~--------~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYREEEDDWVCCAT--------LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEEEETTEEEEEEE--------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEE--------ecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 99999999999999999999995444222222 3468899999999999999999999999999997533211
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe------eEEeeecccCCCC
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT------VLYQKHIASDISS 392 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~------~l~~~~~~~~~~~ 392 (826)
. .+......+...... .....|...|.+++|++++..|++++.|+.|++||..... .........+|..
T Consensus 230 ~--~~~~~~~~~~~~~~~---~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~ 304 (345)
T 3fm0_A 230 Q--GVACSGSDPSWKCIC---TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ 304 (345)
T ss_dssp T--CCCCC---CEEEEEE---EECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS
T ss_pred c--cceeeccCCccceeE---EecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC
Confidence 0 000000000000100 1112367789999999999999999999999999987542 1122333457899
Q ss_pred CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.|.+++|+|. +..+|++|+.||+|++|+..+++....
T Consensus 305 ~V~~v~~~p~-----~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 305 DVNCVAWNPK-----EPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp CEEEEEECSS-----STTEEEEEETTSCEEEEEECC------
T ss_pred cEeEeEEeCC-----CceEEEEcCCCCcEEEEEecCCCCccc
Confidence 9999999993 235999999999999999998776543
No 14
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.98 E-value=3.2e-30 Score=283.89 Aligned_cols=292 Identities=12% Similarity=0.165 Sum_probs=214.8
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 86 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~ 86 (826)
..+..|...|.|++| +|+|.+||+|+.||.|++||..++..... +. .+..+|..++|..
T Consensus 58 ~~l~gH~~~V~~~~~-s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~------------~~----~~~~~v~~~~~sp---- 116 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDW-CKDKRRIVSSSQDGKVIVWDSFTTNKEHA------------VT----MPCTWVMACAYAP---- 116 (354)
T ss_dssp EEEECCSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEE------------EE----CSSSCCCEEEECT----
T ss_pred EEecCCCCeEEEEEE-CCCCCEEEEEeCCCeEEEEECCCCCcceE------------Ee----cCCCCEEEEEECC----
Confidence 445567889999999 57999999999999999999877521111 00 1122455555543
Q ss_pred CceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHH
Q 003360 87 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 166 (826)
Q Consensus 87 ~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~ 166 (826)
++.++++||. +|.+.+|+...-
T Consensus 117 ~g~~lasg~~---------------------------------------------------------d~~i~v~~~~~~- 138 (354)
T 2pbi_B 117 SGCAIACGGL---------------------------------------------------------DNKCSVYPLTFD- 138 (354)
T ss_dssp TSSEEEEEST---------------------------------------------------------TSEEEEEECCCC-
T ss_pred CCCEEEEeeC---------------------------------------------------------CCCEEEEEEecc-
Confidence 3444455444 333444433210
Q ss_pred HHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCC--
Q 003360 167 RYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSK-- 241 (826)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~-- 241 (826)
... ........+..|...|++++|++++..+++++ |++|++|+...........+|...|.+ +++
T Consensus 139 ------~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 139 ------KNE----NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp ------TTC----CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred ------ccc----cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence 000 00112234568999999999999999999988 999999987654444333789999988 655
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcccc
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN 321 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~ 321 (826)
++++|++|+.||+|++||+..... +. .+..|...|++++|+|++.+|++|+.||+|++||++.....
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~--~~--------~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~--- 275 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQC--VQ--------AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV--- 275 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCE--EE--------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE---
T ss_pred CCCEEEEEeCCCeEEEEECCCCcE--EE--------EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE---
Confidence 578999999999999999944432 12 23468889999999999999999999999999999843210
Q ss_pred ceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
. . .....+...+++++|+|+|.+|++|+.||+|+|||+.++..+... .+|...|++++|+|
T Consensus 276 --~-----------~---~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l---~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 276 --A-----------I---YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL---FGHENRVSTLRVSP 336 (354)
T ss_dssp --E-----------E---ECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE---CCCSSCEEEEEECT
T ss_pred --E-----------E---EcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE---ECCCCcEEEEEECC
Confidence 0 0 000112346899999999999999999999999999998877444 47899999999999
Q ss_pred cccCCCCCcEEEEEECCCcEEEEE
Q 003360 402 CSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 402 ~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
|+.+|++|+.|++|++|+
T Consensus 337 ------dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 337 ------DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ------TSSCEEEEETTSEEEEEC
T ss_pred ------CCCEEEEEcCCCCEEecC
Confidence 699999999999999996
No 15
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=7.4e-29 Score=305.46 Aligned_cols=502 Identities=12% Similarity=0.095 Sum_probs=289.8
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceE
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 90 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~l 90 (826)
.+...|+|++| +|+|.+||+|+.||.|++||...... ... + .+..+|..++|+. +.+
T Consensus 15 gh~~~V~~laf-spdg~~lAsgs~Dg~I~lw~~~~~~~------------~~~--~---~~~~~V~~l~fsp-----g~~ 71 (902)
T 2oaj_A 15 GMSSKPIAAAF-DFTQNLLAIATVTGEVHIYGQQQVEV------------VIK--L---EDRSAIKEMRFVK-----GIY 71 (902)
T ss_dssp ECSSCEEEEEE-ETTTTEEEEEETTSEEEEECSTTCEE------------EEE--C---SSCCCEEEEEEET-----TTE
T ss_pred CCCCCcEEEEE-CCCCCEEEEEeCCCEEEEEeCCCcEE------------EEE--c---CCCCCEEEEEEcC-----CCE
Confidence 45789999999 58999999999999999998766411 111 1 1355899999985 346
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHh
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~ 170 (826)
+++++.+ ..+.+|.+........+ ...+.+..+.+- ++...+++++.+|.+.+||...-...
T Consensus 72 L~S~s~D----~~v~lWd~~~~~~~~~~----~~~~~V~~v~~s--------p~g~~l~sgs~dg~V~lwd~~~~~~~-- 133 (902)
T 2oaj_A 72 LVVINAK----DTVYVLSLYSQKVLTTV----FVPGKITSIDTD--------ASLDWMLIGLQNGSMIVYDIDRDQLS-- 133 (902)
T ss_dssp EEEEETT----CEEEEEETTTCSEEEEE----ECSSCEEEEECC--------TTCSEEEEEETTSCEEEEETTTTEEE--
T ss_pred EEEEECc----CeEEEEECCCCcEEEEE----cCCCCEEEEEEC--------CCCCEEEEEcCCCcEEEEECCCCccc--
Confidence 6666653 46777776544322222 233444444332 23467888999999999998662100
Q ss_pred hccCCCCCCCCccce-eeecccCCCEEEEEEeeC-CCeEEEec-CCcEEEeccCCCcee-ecc-----------------
Q 003360 171 QYQSRSPPSAPKEVM-LKMPFLDSSITAMKLITG-NSFILSSA-DEDYSLLAKSVPPLL-DFE----------------- 229 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~-~~l~~h~~~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~~~~~-~~~----------------- 229 (826)
.+. . +. .... ..+..|...|++++|+|+ +..+++++ |+.+ +|+....... .+.
T Consensus 134 ~~~--i-~~--~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 207 (902)
T 2oaj_A 134 SFK--L-DN--LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTN 207 (902)
T ss_dssp EEE--E-CC--HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTT
T ss_pred cce--e-cc--ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccc
Confidence 000 0 00 0000 123578899999999996 46777777 9999 9976543322 221
Q ss_pred cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccc-----cc---cCCCCeEEEEEeC----CC
Q 003360 230 TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKD-----FS---LSGIPLTALYYDG----TS 295 (826)
Q Consensus 230 ~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~-----~~---~h~~~V~~l~fsp----~~ 295 (826)
..|.+.|.+ |+|++++|+||+.||+|+|||+..........+....... .. .|..+|++++|++ ++
T Consensus 208 ~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~ 287 (902)
T 2oaj_A 208 EKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEY 287 (902)
T ss_dssp SCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTE
T ss_pred cccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCC
Confidence 124567888 9999999999999999999999433321111111000000 00 1123455555532 11
Q ss_pred -C----------------------------------------------------------------------------EE
Q 003360 296 -R----------------------------------------------------------------------------VL 298 (826)
Q Consensus 296 -~----------------------------------------------------------------------------~L 298 (826)
. .+
T Consensus 288 ~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l 367 (902)
T 2oaj_A 288 TSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLI 367 (902)
T ss_dssp EEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEE
T ss_pred CEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeE
Confidence 2 34
Q ss_pred EEEeCCCcEEEEEeCCCCCc------------cccceEEE----------------------------------eecCCC
Q 003360 299 VSGDQSGMVRIFKLKYEPHA------------IENSFLSF----------------------------------TGSKKG 332 (826)
Q Consensus 299 asgs~dg~V~iwd~~~~~~~------------~~~~~~~i----------------------------------~~s~~~ 332 (826)
++++.||.|++|++..+... +...+..+ .+++++
T Consensus 368 ~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg 447 (902)
T 2oaj_A 368 LLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG 447 (902)
T ss_dssp EEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE
T ss_pred EEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC
Confidence 44444555666665433100 00111111 112222
Q ss_pred C---------eEEEEEEEEe------------------eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE----
Q 003360 333 N---------SHIIHSVKVM------------------KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL---- 381 (826)
Q Consensus 333 ~---------~~~~~~~~~~------------------~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l---- 381 (826)
. ..+++.+... .|...|++++|+|+|++||+|+.||+|+|||+.+++..
T Consensus 448 ~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~ 527 (902)
T 2oaj_A 448 TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVEN 527 (902)
T ss_dssp EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-----
T ss_pred cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccc
Confidence 1 1223321110 34567999999999999999999999999999766210
Q ss_pred --------------------------------------EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 382 --------------------------------------YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 382 --------------------------------------~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.......+|..+|++++|+| |+ +|++|+.|++|++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp------dG-~lAsgs~D~tv~l 600 (902)
T 2oaj_A 528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN------IG-FVGIAYAAGSLML 600 (902)
T ss_dssp ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB------TS-EEEEEETTSEEEE
T ss_pred cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC------Cc-EEEEEeCCCcEEE
Confidence 00122346899999999999 68 9999999999999
Q ss_pred EECCCCceEEeeec--cC-CCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCC---CCEEEEe-ecCcEEEE
Q 003360 424 LDSDNGNMLSTNLI--HP-KKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPK---QWFVLLC-SEKAACAY 496 (826)
Q Consensus 424 wd~~tg~~i~~~~~--~~-~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vv~~-se~~irv~ 496 (826)
||+.++..+..... .. .....+.++.+.-. ...++ ..+++++ .|+.|++|
T Consensus 601 wd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~-----------------------~~~~Dg~~~~~l~sgs~D~tv~~w 657 (902)
T 2oaj_A 601 IDRRGPAIIYMENIREISGAQSACVTCIEFVIM-----------------------EYGDDGYSSILMVCGTDMGEVITY 657 (902)
T ss_dssp EETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEE-----------------------ECTTSSSEEEEEEEEETTSEEEEE
T ss_pred EECCCCeEEEEeehhHhccccccceEEEEEEEE-----------------------ecCCCCCcceEEEEEecCCcEEEE
Confidence 99987776643221 11 23344555544300 01122 2344444 55689999
Q ss_pred eccccccccc-eeeeee-ecC-CCCceeeEeeee-------------------CCceEEEEEEeeceEEEeccCCccccc
Q 003360 497 SLSHAVQGVK-KVLYKK-KFH-SSSCCWASTFYS-------------------GSDVGLMLLFTSGKFEIRSLPELSLLK 554 (826)
Q Consensus 497 sl~~~~~g~~-k~~~k~-~~~-~~~c~~~~~~~~-------------------~~~~~lv~~~~~G~I~i~slP~L~~l~ 554 (826)
++.....|.. ..+... .+. .........+.. ....+.++++.+..|+|+++|..+.+.
T Consensus 658 d~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k~~~ 737 (902)
T 2oaj_A 658 KILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSKSTH 737 (902)
T ss_dssp EEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCCEEE
T ss_pred EEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCcccccee
Confidence 9821001111 011111 010 011111222221 124677888889999999999988775
Q ss_pred cc-c----ccce---eecC-CCCCCCcccceeccCCCcEEEEcC
Q 003360 555 ET-S----IRGF---VYLT-PKPNSLSNTLMCSSWDGELIMVNG 589 (826)
Q Consensus 555 ~~-s----l~~~---~~~~-~~~~~~~~~~~~~s~~G~i~~~~g 589 (826)
.. . ...+ .|.. .....++...+|.+.||+|.+|+=
T Consensus 738 k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~ 781 (902)
T 2oaj_A 738 KGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTI 781 (902)
T ss_dssp EECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEET
T ss_pred eEcccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEEC
Confidence 43 0 1122 2000 001245667788888888888874
No 16
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.98 E-value=8.1e-31 Score=291.53 Aligned_cols=306 Identities=12% Similarity=0.185 Sum_probs=216.5
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 86 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~ 86 (826)
.++..|...|++++| +|+|.+||+|+.||.|++||+.++..... + ..+..+|..++|..
T Consensus 60 ~~l~gH~~~V~~~~~-sp~~~~l~s~s~D~~v~iWd~~~~~~~~~------------~----~~h~~~v~~~~~s~---- 118 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDW-TPEKNWIVSASQDGRLIVWNALTSQKTHA------------I----KLHCPWVMECAFAP---- 118 (380)
T ss_dssp EEECCCSSCEEEEEE-CTTSSCEEEEETTSEEEEEETTTTEEEEE------------E----ECCCTTCCCCEECT----
T ss_pred ecccccccEEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCccceE------------E----ecCCCCEEEEEECC----
Confidence 345667889999999 57999999999999999999887521111 0 01222344444432
Q ss_pred CceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHH
Q 003360 87 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 166 (826)
Q Consensus 87 ~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~ 166 (826)
++.++++|| .++.+.+||.....
T Consensus 119 ~g~~las~~---------------------------------------------------------~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 119 NGQSVACGG---------------------------------------------------------LDSACSIFNLSSQA 141 (380)
T ss_dssp TSSEEEECC---------------------------------------------------------SSSCCEEEECCCCS
T ss_pred CCCEEEEee---------------------------------------------------------CCCcEEEEECCCCc
Confidence 334444444 34444455543200
Q ss_pred HHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCC-CeEEEec-CCcEEEeccCCCceeec-----ccccCCccee-
Q 003360 167 RYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGN-SFILSSA-DEDYSLLAKSVPPLLDF-----ETKLKDGSQS- 238 (826)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~-~~l~~~~-d~~i~~w~~~~~~~~~~-----~~~h~g~V~~- 238 (826)
.... .......+..|...|.++.|+|++ ..+++++ |++|++|+......... ..+|...|.+
T Consensus 142 -----~~~~-----~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 142 -----DRDG-----NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp -----SCCC-----SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred -----cccC-----CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 0000 111223467899999999999975 4588888 99999997665433322 2568888888
Q ss_pred -eCC-CCCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 239 -HSK-VKNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 -~s~-~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
+++ ++++|++|+.||+|++||+. .... ...+..|...|++++|+|++.+|++|+.||+|++||++++
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~----------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRA----------VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCC----------CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcc----------eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 654 88999999999999999994 3221 1123478899999999999999999999999999999854
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeee-cccCCCCCe
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH-IASDISSGI 394 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~-~~~~~~~~V 394 (826)
... ..+...... ...+...|++++|+|+|.+|++|+.||.|++||+..++.+.... ...+|...|
T Consensus 282 ~~~-----~~~~~~~~~---------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v 347 (380)
T 3iz6_a 282 HQL-----QVYNREPDR---------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI 347 (380)
T ss_dssp EEE-----EEECCCCSS---------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCC
T ss_pred cEE-----EEecccccc---------cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCce
Confidence 321 000000000 00112348999999999999999999999999999988875542 235789999
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
++++|+| |+.+|++|+.|++|++|+...++
T Consensus 348 ~~l~~s~------dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 348 SCLGLSS------DGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CEEEECS------SSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEECC------CCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999 69999999999999999998654
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=1e-29 Score=275.52 Aligned_cols=295 Identities=13% Similarity=0.120 Sum_probs=219.6
Q ss_pred ccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCC
Q 003360 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADG 85 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~ 85 (826)
..++..|...|++++|.+.++.+|++|+.||+|++||+...... ...++.. ...|..+|..+.|..
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~-------~~~~~~~----~~~h~~~v~~~~~s~--- 75 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-------FGVPVRS----FKGHSHIVQDCTLTA--- 75 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-------EEEEEEE----EECCSSCEEEEEECT---
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-------ccccceE----EeCCcccEEEEEECC---
Confidence 44566789999999996445689999999999999987653100 0001000 011222333332221
Q ss_pred CCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhH
Q 003360 86 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 165 (826)
Q Consensus 86 ~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i 165 (826)
+...++.++.+|.+.+||..+-
T Consensus 76 ----------------------------------------------------------dg~~l~s~s~D~~v~~wd~~~~ 97 (319)
T 3frx_A 76 ----------------------------------------------------------DGAYALSASWDKTLRLWDVATG 97 (319)
T ss_dssp ----------------------------------------------------------TSSEEEEEETTSEEEEEETTTT
T ss_pred ----------------------------------------------------------CCCEEEEEeCCCEEEEEECCCC
Confidence 1244566677788889987651
Q ss_pred HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCC
Q 003360 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKV 242 (826)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~ 242 (826)
.....+..|...|++++|++++..+++++ |++|++|+........+ .+|.+.|.+ ++|.
T Consensus 98 -----------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~-~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 98 -----------------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL-LGHNDWVSQVRVVPN 159 (319)
T ss_dssp -----------------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEE-CCCSSCEEEEEECCC
T ss_pred -----------------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-eccCCcEEEEEEccC
Confidence 12345678999999999999999999998 99999998766555555 788988888 6664
Q ss_pred ------CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 243 ------KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 243 ------~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
+.+|++|+.||+|++||+..... . ..+..|...|++++|+|++.+|++|+.||+|+|||+....
T Consensus 160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~--------~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKMVKAWNLNQFQI--E--------ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp ------CCEEEEEETTSCEEEEETTTTEE--E--------EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred CCCCCCccEEEEEeCCCEEEEEECCcchh--h--------eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 55899999999999999954442 1 1234688999999999999999999999999999998432
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeec-----ccCCC
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI-----ASDIS 391 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~-----~~~~~ 391 (826)
. +.....+..|.+++|+|++.++++++.++ +++|++....++..... ...+.
T Consensus 230 ~----------------------~~~~~~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~ 286 (319)
T 3frx_A 230 A----------------------MYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAE 286 (319)
T ss_dssp E----------------------EEEEECCSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred E----------------------EEEecCCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcC
Confidence 2 33344567899999999999999888665 89999988776644321 12346
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
..+.+++|+| |+++|++|+.|+.|++||+.++
T Consensus 287 ~~v~~~~~sp------dg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 287 PHAVSLAWSA------DGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCEEEEEECT------TSSEEEEEETTSCEEEEEEEEC
T ss_pred cceeEEEECC------CCCEEEEeecCceEEEEEEeec
Confidence 6799999999 6999999999999999998764
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=1e-28 Score=275.79 Aligned_cols=249 Identities=13% Similarity=0.179 Sum_probs=186.1
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..++.++.+|.+.+||...- .....+..|...|++++|+|++..+++++ |+++++|+.....
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~-----------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENR-----------------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp SEEEEEETTSCEEEEETTTT-----------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CEEEEEcCCCeEEEEECCCC-----------------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence 45667778889999997651 13345688999999999999999999988 9999999766543
Q ss_pred eeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 225 LLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
.... ..+..++.+ ++| ++++|++|+.||+|++||+..... +..+... ......|...|++++|+|++++|++|
T Consensus 199 ~~~~-~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~--~~~~~~~-~~~~~~h~~~v~~v~~~~~g~~l~s~ 274 (393)
T 1erj_A 199 CSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL--VERLDSE-NESGTGHKDSVYSVVFTRDGQSVVSG 274 (393)
T ss_dssp EEEE-EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE--EEEEC-------CCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEE-EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE--EEeeccc-ccCCCCCCCCEEEEEECCCCCEEEEE
Confidence 3322 345667777 888 899999999999999999954432 1222211 11224688999999999999999999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
+.||+|++||++....... ......+.. . ..+..|...|.+++|++++.+|++|+.||.|++||+.+++++
T Consensus 275 s~d~~v~~wd~~~~~~~~~-----~~~~~~~~~-~---~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSD-----SKTPNSGTC-E---VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345 (393)
T ss_dssp ETTSEEEEEEC--------------------CE-E---EEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred eCCCEEEEEECCCCCCccc-----ccCCCCCcc-e---EEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 9999999999985422100 000001111 1 445567888999999999999999999999999999999988
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
... .+|...|.+++|.+......++.+|++|+.||+|++|+..
T Consensus 346 ~~l---~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 346 LML---QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEE---ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEE---CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 555 3788999999998754444468899999999999999975
No 19
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=3.1e-27 Score=277.97 Aligned_cols=481 Identities=12% Similarity=0.094 Sum_probs=296.9
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCC-eEEEEEeeeCCCCce
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIP-ISSLKWVYADGKASR 89 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-I~~l~W~~~~~~~g~ 89 (826)
.+...|++++| +|+|++||++. ||.|++||+.++.... .++..+ ..+..+ |..+.|+.. .++.
T Consensus 16 ~~~~~v~~~~~-spdg~~l~~~~-~~~v~v~~~~~~~~~~--------~~~~~~----~~h~~~~v~~~~~sp~--~~~~ 79 (615)
T 1pgu_A 16 TQRNFTTHLSY-DPTTNAIAYPC-GKSAFVRCLDDGDSKV--------PPVVQF----TGHGSSVVTTVKFSPI--KGSQ 79 (615)
T ss_dssp CCTTCCCCCEE-ETTTTEEEEEE-TTEEEEEECCSSCCSS--------CSEEEE----CTTTTSCEEEEEECSS--TTCC
T ss_pred CccCceeEEEE-CCCCCEEEEec-CCeEEEEECCCCCCcc--------ccceEE----ecCCCceEEEEEECcC--CCCC
Confidence 45778999999 58999999998 9999999998751000 011111 234567 999998641 1456
Q ss_pred EEEEccCCcCccceeEEEEcccCCc----ceeEEEee-cCCCceeeEEEecCCCCCCCCCCceEEEeccC----ccEEEe
Q 003360 90 LYIMGASDFVSMNLLQIVLLNEQTE----SRTTKLAL-PLSEPCIDMEIISSSSDPNKPKQDSFLLLGKS----GHFYAF 160 (826)
Q Consensus 90 lli~gg~~~~~~~~~~vl~~~~~~~----~~~~~~~l-~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~----G~l~~~ 160 (826)
++++|+.+ ..+.+|.+..... .......+ .....+..+.+.+. ...+++.+.. |.+++|
T Consensus 80 ~l~s~~~d----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------~~~l~~~~~~~~~~~~v~~~ 147 (615)
T 1pgu_A 80 YLCSGDES----GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE--------GRRLCVVGEGRDNFGVFISW 147 (615)
T ss_dssp EEEEEETT----SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT--------SSEEEEEECCSSCSEEEEET
T ss_pred EEEEecCC----CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC--------CCEEEEeccCCCCccEEEEE
Confidence 77777663 3566666642200 11111122 23455665555432 3456666655 789999
Q ss_pred cchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC-eEEEec-CCcEEEeccCCCceeecccccCC---c
Q 003360 161 DDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS-FILSSA-DEDYSLLAKSVPPLLDFETKLKD---G 235 (826)
Q Consensus 161 d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~-~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g---~ 235 (826)
|... ....+..|...|++++|+|+++ .+++++ |+.+++|+...........+|.+ .
T Consensus 148 d~~~-------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~ 208 (615)
T 1pgu_A 148 DSGN-------------------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 208 (615)
T ss_dssp TTCC-------------------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCC
T ss_pred ECCC-------------------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCce
Confidence 8433 2344678999999999999998 677877 99999998655443333366888 8
Q ss_pred cee--eCCC-CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEe
Q 003360 236 SQS--HSKV-KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKL 312 (826)
Q Consensus 236 V~~--~s~~-~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~ 312 (826)
|.+ |+|+ +++|++|+.||.|++||+..... +..+.. ....|...|++++|+ ++.+|++++.||.|++||+
T Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~----~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~ 281 (615)
T 1pgu_A 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF--LKYIED----DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV 281 (615)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTCCE--EEECCB----TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEET
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE--eEEecc----cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEEC
Confidence 888 9999 99999999999999999944432 222210 001577899999999 9999999999999999999
Q ss_pred CCCCCccccceEEEeecCCCCeEEEEEEEEee-----ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 313 KYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-----INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 313 ~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-----~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
+.+.. +.... ....+.++.|+ ++.++++|+.||.|++||+.+++.+....
T Consensus 282 ~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~-- 336 (615)
T 1pgu_A 282 TTSKC----------------------VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTIS-- 336 (615)
T ss_dssp TTTEE----------------------EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEEC--
T ss_pred CCCcE----------------------EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEe--
Confidence 84322 11111 23568888886 88899999999999999998877764442
Q ss_pred cCCCCCeeEEEEeecc----------------------------cCCCCCcEEEEEECCCcEEEEECCC-----------
Q 003360 388 SDISSGIVSLQFETCS----------------------------LQGFEKNFLVIATKDSSVLVLDSDN----------- 428 (826)
Q Consensus 388 ~~~~~~V~sl~f~~~~----------------------------~~~~d~~~l~sgs~Dg~V~iwd~~t----------- 428 (826)
+|..+|++++| +.. .. .++..|++++.|+.|++||..+
T Consensus 337 -~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 413 (615)
T 1pgu_A 337 -GHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVAS 413 (615)
T ss_dssp -CCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEE
T ss_pred -CCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEE
Confidence 45555555555 310 00 0266777888888887777653
Q ss_pred -----------------------CceEEeeeccCCCC------CcceEEEEecCCCCc----ccCccc--cccccccC-C
Q 003360 429 -----------------------GNMLSTNLIHPKKP------SRALFMQILNGQDGL----ARGANL--SNVAGMNK-G 472 (826)
Q Consensus 429 -----------------------g~~i~~~~~~~~~~------~~~lsi~~l~~~~~~----~~~~~~--~~~~~~~~-~ 472 (826)
++.+..+. +.... ...+..... .++.+ ...... ........ .
T Consensus 414 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~d~~i~~~~~~~~~~~~~~~~~~~~~v 491 (615)
T 1pgu_A 414 ANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLSQNYVAVGLE-EGNTIQVFKLSDLEVSFDLKTPLRAKP 491 (615)
T ss_dssp ECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSEEEEEET-TTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred EcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEcCCEEEEeec-CCCeEEEEECCCccccccccCCccCce
Confidence 33333221 00000 111111111 01111 000000 11111111 1
Q ss_pred CCCCCCCCCCCEEEEeec-CcEEEEeccccccccceeeeeeec-CCCCceeeEeeeeC----------CceEEEEEEeec
Q 003360 473 SPKENAVPKQWFVLLCSE-KAACAYSLSHAVQGVKKVLYKKKF-HSSSCCWASTFYSG----------SDVGLMLLFTSG 540 (826)
Q Consensus 473 ~~~~~~~~~~~~vv~~se-~~irv~sl~~~~~g~~k~~~k~~~-~~~~c~~~~~~~~~----------~~~~lv~~~~~G 540 (826)
..+ .+++++.++++++. +.|++|++.. .+.+..... + ...+.. +.-++ .+..|++...+|
T Consensus 492 ~~~-~~s~~g~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~h-~~~v~~-~~~sp~~~~~~~~~~~~~~l~~~~~dg 563 (615)
T 1pgu_A 492 SYI-SISPSETYIAAGDVMGKILLYDLQS-----REVKTSRWAFR-TSKINA-ISWKPAEKGANEEEIEEDLVATGSLDT 563 (615)
T ss_dssp EEE-EECTTSSEEEEEETTSCEEEEETTT-----TEEEECCSCCC-SSCEEE-EEECCCC------CCSCCEEEEEETTS
T ss_pred EEE-EECCCCCEEEEcCCCCeEEEeeCCC-----CcceeEeecCC-CCceeE-EEEcCccccccccccCCCEEEEEcCCC
Confidence 111 35667777777654 6899999973 333333221 1 111111 11114 788899999999
Q ss_pred eEEEeccCCc-cccccc-----cccceeecCCCCCCCcccceeccCCCcEEEEcC
Q 003360 541 KFEIRSLPEL-SLLKET-----SIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNG 589 (826)
Q Consensus 541 ~I~i~slP~L-~~l~~~-----sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~g 589 (826)
.|+++++... +.+... .+.++.|. +++. .++.+.||.+.+|+-
T Consensus 564 ~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s-----~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 564 NIFIYSVKRPMKIIKALNAHKDGVNNLLWE-----TPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp CEEEEESSCTTCCEEETTSSTTCEEEEEEE-----ETTE-EEEEETTSCEEEEEE
T ss_pred cEEEEECCCCceechhhhcCccceEEEEEc-----CCCC-eEEecCCceEEEEee
Confidence 9999999886 444432 24456666 3445 777777777777764
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=3.6e-29 Score=274.02 Aligned_cols=298 Identities=12% Similarity=0.083 Sum_probs=214.1
Q ss_pred ccccccccccceEEEe-----cCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEE
Q 003360 6 LQSVYHETKQVTSACW-----ACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKW 80 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW-----~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W 80 (826)
.+.+..|...|++++| .+++|.+||+|+.||.|++||+........ ...+... ...|..+|..+.|
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-----~~~~~~~----l~~h~~~V~~~~~ 84 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-----FGIPHKA----LTGHNHFVSDLAL 84 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-----SEEEEEE----ECCCSSCEEEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-----cccccch----hccCCCceEEEEE
Confidence 3445667889999999 555999999999999999999876411000 0001000 0112233444433
Q ss_pred eeeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEe
Q 003360 81 VYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAF 160 (826)
Q Consensus 81 ~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~ 160 (826)
.. +...++.++.+|.+.+|
T Consensus 85 ~~-------------------------------------------------------------~~~~l~s~s~D~~v~lw 103 (343)
T 2xzm_R 85 SQ-------------------------------------------------------------ENCFAISSSWDKTLRLW 103 (343)
T ss_dssp CS-------------------------------------------------------------STTEEEEEETTSEEEEE
T ss_pred CC-------------------------------------------------------------CCCEEEEEcCCCcEEEE
Confidence 22 12344556667888888
Q ss_pred cchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec--ccccCCcce
Q 003360 161 DDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF--ETKLKDGSQ 237 (826)
Q Consensus 161 d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~--~~~h~g~V~ 237 (826)
|...- .....+..|...|++++|+|+++.+++++ |+.|++|+......... ...|...|.
T Consensus 104 d~~~~-----------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 104 DLRTG-----------------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVS 166 (343)
T ss_dssp ETTSS-----------------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred ECCCC-----------------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence 87551 12345678999999999999999999998 99999997654333222 236888888
Q ss_pred e--eCCCC----------CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC
Q 003360 238 S--HSKVK----------NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG 305 (826)
Q Consensus 238 ~--~s~~~----------~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg 305 (826)
+ |+|++ .++++|+.||+|++||..... ... +..|...|++++|+|++++|++|+.||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~--------~~~h~~~v~~~~~s~~g~~l~sgs~dg 235 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI---RYT--------FKAHESNVNHLSISPNGKYIATGGKDK 235 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEE---EEE--------EECCSSCEEEEEECTTSSEEEEEETTC
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCce---eEE--------EcCccccceEEEECCCCCEEEEEcCCC
Confidence 8 88876 799999999999999964332 111 346888999999999999999999999
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE--e
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY--Q 383 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~--~ 383 (826)
.|++||+..... . .....+...|.+++|+|++.++++| .|+.|++||+.++.... .
T Consensus 236 ~v~iwd~~~~~~----------------~-----~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~ 293 (343)
T 2xzm_R 236 KLLIWDILNLTY----------------P-----QREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCT 293 (343)
T ss_dssp EEEEEESSCCSS----------------C-----SEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEE
T ss_pred eEEEEECCCCcc----------------c-----ceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEE
Confidence 999999953221 1 1222345679999999999877765 57779999998765432 1
Q ss_pred eec--------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 384 KHI--------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 384 ~~~--------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
... ..+|...|.+++|+| ++.+|++|+.||+|++|+..+|
T Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~sp------~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 294 IEAEPITKAEGQKGKNPQCTSLAWNA------LGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCCCSGGGBTTBCCSCCCEEEEEECS------SSCCEEEEETTSEEEEEEEEEE
T ss_pred eecCcchhhhhhcCCCCceEEEEECC------CCCeEEEecCCceEEEEEEEcc
Confidence 211 125778899999999 5999999999999999998754
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=1.3e-28 Score=264.86 Aligned_cols=285 Identities=12% Similarity=0.112 Sum_probs=212.4
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
..++..|...|++++|+|+++.+++++ |+.|++|+............|...|.+ |++++++|++|+.||+|++||+.
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 345789999999999999999999998 999999987654433333678888888 99999999999999999999994
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.... +.. +..|...|++++|+|++.+|++|+.||+|++||++.+.. .. ..
T Consensus 86 ~~~~--~~~--------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-----------------~~---~~ 135 (304)
T 2ynn_A 86 TGEK--VVD--------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----------------LE---QT 135 (304)
T ss_dssp TCCE--EEE--------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----------------EE---EE
T ss_pred CCcE--EEE--------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----------------hh---hh
Confidence 4432 122 346889999999999999999999999999999974321 11 23
Q ss_pred EeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 342 VMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
+..|...|++++|+| ++.+|++|+.||+|++||++++...+... .++...|..+.|.+. .++.+|++|+.|++
T Consensus 136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~~~l~s~s~D~~ 209 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPL----PDKPYMITASDDLT 209 (304)
T ss_dssp ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE--CCCTTCEEEEEECCS----TTCCEEEEEETTSE
T ss_pred hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec--cCCcCcEEEEEEEEc----CCCCEEEEEcCCCe
Confidence 445778899999999 67899999999999999998877664443 456678999999873 14789999999999
Q ss_pred EEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEecc
Q 003360 421 VLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLS 499 (826)
Q Consensus 421 V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~ 499 (826)
|++||.++++++.++.+|... +.++. ++++..+++.++ |+.|+||++.
T Consensus 210 i~iWd~~~~~~~~~~~~h~~~---v~~~~----------------------------~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 210 IKIWDYQTKSCVATLEGHMSN---VSFAV----------------------------FHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEEEETTTTEEEEEEECCSSC---EEEEE----------------------------ECSSSSEEEEEETTSCEEEEETT
T ss_pred EEEEeCCCCccceeeCCCCCC---EEEEE----------------------------ECCCCCEEEEEcCCCeEEEEECC
Confidence 999999999999888766432 22222 234445666655 5689999997
Q ss_pred ccccccceeeeeeecCCCCceeeEeeee-CCceEEEEEEeeceE
Q 003360 500 HAVQGVKKVLYKKKFHSSSCCWASTFYS-GSDVGLMLLFTSGKF 542 (826)
Q Consensus 500 ~~~~g~~k~~~k~~~~~~~c~~~~~~~~-~~~~~lv~~~~~G~I 542 (826)
..+.+...... ....|...+.. +....+++.+.+|.+
T Consensus 259 -----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~asg~~~g~~ 296 (304)
T 2ynn_A 259 -----TYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNGFT 296 (304)
T ss_dssp -----TCCEEEEECCS-SSSEEEEEECTTCGGGCEEEEETTEEE
T ss_pred -----CCceeeeccCC-CccEEEEEECCCCCceEEEEecCCceE
Confidence 34444444333 22333322222 222346666666644
No 22
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=1.1e-27 Score=281.99 Aligned_cols=460 Identities=13% Similarity=0.181 Sum_probs=283.1
Q ss_pred ccccccccccc-ceEEEecCC--CCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEe
Q 003360 5 VLQSVYHETKQ-VTSACWACP--IGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWV 81 (826)
Q Consensus 5 ~~~~~~~~~~~-i~slcW~~p--~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~ 81 (826)
....+..+... |++++| +| +|++||+|+.||.|++||+.++....... ...... ...+..+|..+.|.
T Consensus 55 ~~~~~~~h~~~~v~~~~~-sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~----~~~~~~----~~~~~~~v~~~~~s 125 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKF-SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE----VNVKSE----FQVLAGPISDISWD 125 (615)
T ss_dssp SEEEECTTTTSCEEEEEE-CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE----EEEEEE----EECCSSCEEEEEEC
T ss_pred cceEEecCCCceEEEEEE-CcCCCCCEEEEecCCCEEEEEeCCCCccccccc----ccccch----hhcccccEEEEEEe
Confidence 34455556778 999999 68 99999999999999999997541100000 001111 11245689999997
Q ss_pred eeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEec
Q 003360 82 YADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFD 161 (826)
Q Consensus 82 ~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d 161 (826)
. ++..+++++.+. .....++.++... ...........+..+.+.+.. +..++.++.+|.+.+||
T Consensus 126 ~----~~~~l~~~~~~~--~~~~~v~~~d~~~---~~~~~~~~~~~v~~~~~~~~~-------~~~l~~~~~d~~v~vwd 189 (615)
T 1pgu_A 126 F----EGRRLCVVGEGR--DNFGVFISWDSGN---SLGEVSGHSQRINACHLKQSR-------PMRSMTVGDDGSVVFYQ 189 (615)
T ss_dssp T----TSSEEEEEECCS--SCSEEEEETTTCC---EEEECCSCSSCEEEEEECSSS-------SCEEEEEETTTEEEEEE
T ss_pred C----CCCEEEEeccCC--CCccEEEEEECCC---cceeeecCCccEEEEEECCCC-------CcEEEEEeCCCcEEEEe
Confidence 5 456666666542 1234455555222 111111223344444443322 22578888999999999
Q ss_pred chhHHHHHhhccCCCCCCCCccceeeecccCC---CEEEEEEeeC-CCeEEEec-CCcEEEeccCCCceee-ccc---cc
Q 003360 162 DCQIERYLLQYQSRSPPSAPKEVMLKMPFLDS---SITAMKLITG-NSFILSSA-DEDYSLLAKSVPPLLD-FET---KL 232 (826)
Q Consensus 162 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~~~~~~-~~~---~h 232 (826)
... ......+..|.. .|++++|+|+ ++.+++++ |+.+++|+........ +.. .|
T Consensus 190 ~~~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 252 (615)
T 1pgu_A 190 GPP-----------------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 252 (615)
T ss_dssp TTT-----------------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC
T ss_pred CCC-----------------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc
Confidence 654 123345678888 9999999999 99999988 9999999865544333 324 89
Q ss_pred CCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecc-----------------------------------ccc
Q 003360 233 KDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK-----------------------------------QQS 275 (826)
Q Consensus 233 ~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~-----------------------------------~~~ 275 (826)
.+.|.+ |+ ++++|++++.||+|++||+........+... .+.
T Consensus 253 ~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence 999988 88 9999999999999999999533321111111 001
Q ss_pred ccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceE-------------------------------
Q 003360 276 EKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL------------------------------- 324 (826)
Q Consensus 276 ~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~------------------------------- 324 (826)
...+..|...|++++| |+ |++|+.||.|++|++..-...+...+.
T Consensus 332 ~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~ 407 (615)
T 1pgu_A 332 LKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGS 407 (615)
T ss_dssp EEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSS
T ss_pred EEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccC
Confidence 1123345566666666 55 555555555555554300011111222
Q ss_pred ---EEeecCCCCeEE--------EEE------EEEeeccCCeEEEEEccCCCEEEEEec-CCeEEEEecCCCeeEEeeec
Q 003360 325 ---SFTGSKKGNSHI--------IHS------VKVMKINGSIISLNMNRNSQHLAVGSD-QGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 325 ---~i~~s~~~~~~~--------~~~------~~~~~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~~~~~l~~~~~ 386 (826)
.+.+++++.... ++. +....+...+++++|+ +.+|++|+. ||.|++||+.++.... ..
T Consensus 408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~--~~ 483 (615)
T 1pgu_A 408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF--DL 483 (615)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE--EC
T ss_pred CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc--cc
Confidence 222333221110 000 2233457789999999 889999999 9999999998876652 33
Q ss_pred ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccccc
Q 003360 387 ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNV 466 (826)
Q Consensus 387 ~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~ 466 (826)
...|...|++++|+| ++.+|++++.|+.|++||+.+++.+..+... ....+.++.+.......
T Consensus 484 ~~~~~~~v~~~~~s~------~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~--------- 546 (615)
T 1pgu_A 484 KTPLRAKPSYISISP------SETYIAAGDVMGKILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGA--------- 546 (615)
T ss_dssp SSCCSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTTEEEECCSCC--CSSCEEEEEECCCC------------
T ss_pred cCCccCceEEEEECC------CCCEEEEcCCCCeEEEeeCCCCcceeEeecC--CCCceeEEEEcCccccc---------
Confidence 457889999999999 6999999999999999999999988775331 22334444432100000
Q ss_pred ccccCCCCCCCCCCCCCEEEEee-cCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEe
Q 003360 467 AGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIR 545 (826)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~ 545 (826)
.....++.++++++ ++.|+||++... .+.+.....+ ........+ ++.+. |+....+|.|++|
T Consensus 547 ---------~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~h-~~~v~~l~~-s~~~~-l~s~~~d~~v~iw 610 (615)
T 1pgu_A 547 ---------NEEEIEEDLVATGSLDTNIFIYSVKRP----MKIIKALNAH-KDGVNNLLW-ETPST-LVSSGADACIKRW 610 (615)
T ss_dssp ------------CCSCCEEEEEETTSCEEEEESSCT----TCCEEETTSS-TTCEEEEEE-EETTE-EEEEETTSCEEEE
T ss_pred ---------cccccCCCEEEEEcCCCcEEEEECCCC----ceechhhhcC-ccceEEEEE-cCCCC-eEEecCCceEEEE
Confidence 00001445666655 569999999731 1233332222 111111111 24566 8999999999999
Q ss_pred ccC
Q 003360 546 SLP 548 (826)
Q Consensus 546 slP 548 (826)
.+.
T Consensus 611 ~~~ 613 (615)
T 1pgu_A 611 NVV 613 (615)
T ss_dssp EEC
T ss_pred eee
Confidence 864
No 23
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.9e-29 Score=269.52 Aligned_cols=311 Identities=12% Similarity=0.087 Sum_probs=209.0
Q ss_pred cccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeC
Q 003360 5 VLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYAD 84 (826)
Q Consensus 5 ~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~ 84 (826)
+++.+..|...|.+++|. |+ +||+|+.||.|++||+.++... .... +....|..+|..++|..
T Consensus 6 ~~~~~~~h~~~v~~~~~s-~~--~las~~~D~~i~lw~~~~~~~~----------~~~~--~~~~~h~~~v~~v~~sp-- 68 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFS-QG--ILATGSTDRKIKLVSVKYDDFT----------LIDV--LDETAHKKAIRSVAWRP-- 68 (330)
T ss_dssp EEEEEECCSSCEEEEEEE-TT--EEEEEESSSCEEEEECSSSCCE----------EEEE--ECTTCCCSCEEEEEECT--
T ss_pred cceeeccCCCceeeeccC-CC--EEEEEcCCCEEEEEEecCCCeE----------EEEE--EecCCccCCEEEEEECC--
Confidence 455666788899999994 45 9999999999999998764100 0000 11122455677777754
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchh
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~ 164 (826)
++.++++| +.+|.+.+||...
T Consensus 69 --~~~~las~---------------------------------------------------------s~D~~v~iw~~~~ 89 (330)
T 2hes_X 69 --HTSLLAAG---------------------------------------------------------SFDSTVSIWAKEE 89 (330)
T ss_dssp --TSSEEEEE---------------------------------------------------------ETTSCEEEEEC--
T ss_pred --CCCEEEEE---------------------------------------------------------eCCCcEEEEEccc
Confidence 23333333 3445555665432
Q ss_pred HHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-C---ceeecccccCCccee-
Q 003360 165 IERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-P---PLLDFETKLKDGSQS- 238 (826)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-~---~~~~~~~~h~g~V~~- 238 (826)
-. . . .........+..|...|++++|+|+++++++++ |++|++|+... . .......+|.+.|.+
T Consensus 90 ~~------~-~---~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 90 SA------D-R---TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp ---------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred Cc------C-c---cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 00 0 0 001122344678999999999999999999999 99999997632 1 112223679999998
Q ss_pred -eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCC
Q 003360 239 -HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 -~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~ 315 (826)
|+|++++|++|+.||+|++||.......++.. +..|...|++++|+|+ +..|++|+.|++|++||++..
T Consensus 160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAV--------LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEEEEEEE--------ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE--------ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 99999999999999999999984433222222 3478899999999998 679999999999999999743
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEE-e-eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCC-
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKV-M-KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISS- 392 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~-~-~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~- 392 (826)
.... ..... .... . .|...|++++|++++ +|++|+.||+|+|||..++...........|..
T Consensus 232 ~~~~------------~~~~~--~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~ 296 (330)
T 2hes_X 232 DEDD------------QQEWV--CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVY 296 (330)
T ss_dssp CTTS------------CEEEE--EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTS
T ss_pred Cccc------------cceeE--EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccc
Confidence 2210 00000 0111 1 267789999999766 799999999999999988743211222245666
Q ss_pred CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
.|.+++|+|. .++.+|++|+.||+|++||+.+
T Consensus 297 ~v~~v~~~~~----~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 297 EINVVKWLEL----NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEEC---------CCEEEEETTSEEEEEEC--
T ss_pred eEEEEEEecC----CCceEEEEecCCCcEEEEEecc
Confidence 8999999982 0367899999999999999864
No 24
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=1.3e-28 Score=276.70 Aligned_cols=290 Identities=12% Similarity=0.096 Sum_probs=221.1
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
..+..|..+|++++|+|+++.+++|+ |++|++|+...........+|.+.|.+ |+|++++|++|+.||+|++||+..
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45689999999999999999999998 999999986654443333789999998 999999999999999999999954
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
... +. .+..|...|++++|+|++.+|++|+.|++|++||++++.. . ..+
T Consensus 182 ~~~--~~--------~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-----------------~----~~~ 230 (410)
T 1vyh_C 182 FEC--IR--------TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-----------------V----KTF 230 (410)
T ss_dssp SCE--EE--------CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------------E----EEE
T ss_pred Cce--eE--------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------------E----EEE
Confidence 431 12 2347888999999999999999999999999999985432 1 234
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccC--------------CCC
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQ--------------GFE 408 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~--------------~~d 408 (826)
..|...|.+++|++++.+|++|+.||+|++||++++.+.... ..|...|.++.|+|.... ..+
T Consensus 231 ~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 231 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL---REHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEe---cCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 456778999999999999999999999999999999887554 378889999999983110 012
Q ss_pred CcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe
Q 003360 409 KNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC 488 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~ 488 (826)
+.+|++|+.|++|++||+.++.++.++.+|.. .+.++.+ ++++.+++++
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~---~v~~v~~----------------------------~~~g~~l~s~ 356 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN---WVRGVLF----------------------------HSGGKFILSC 356 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEEEEECCSS---CEEEEEE----------------------------CSSSSCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEECCCC---cEEEEEE----------------------------cCCCCEEEEE
Confidence 67899999999999999999999988766543 2333332 2344455555
Q ss_pred e-cCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEecc
Q 003360 489 S-EKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSL 547 (826)
Q Consensus 489 s-e~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~sl 547 (826)
+ |+.|+||++. ..+.+.....+ ...++.. ...+.+..++....||.|++|.+
T Consensus 357 s~D~~i~vwd~~-----~~~~~~~~~~h-~~~v~~l-~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 357 ADDKTLRVWDYK-----NKRCMKTLNAH-EHFVTSL-DFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ETTTEEEEECCT-----TSCCCEEEECC-SSCEEEE-EECSSSSCEEEEETTSEEEEEC-
T ss_pred eCCCeEEEEECC-----CCceEEEEcCC-CCcEEEE-EEcCCCCEEEEEeCCCcEEEEeC
Confidence 5 5689999997 23334443332 2222211 11256677888899999999863
No 25
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=3.4e-28 Score=311.12 Aligned_cols=486 Identities=13% Similarity=0.111 Sum_probs=309.3
Q ss_pred ccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCcccccccccccc-----------c----------cccccc
Q 003360 6 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQ-----------I----------TPICKL 64 (826)
Q Consensus 6 ~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~-----------~----------~~~~~~ 64 (826)
...+..+...|++++| +|+|++||+|+.||.|++||+.++........... + ..+.-+
T Consensus 650 ~~~~~~h~~~v~~~~~-s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw 728 (1249)
T 3sfz_A 650 LLDIKAHEDEVLCCAF-SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728 (1249)
T ss_dssp EEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred EEEeccCCCCEEEEEE-ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence 4455567889999999 68999999999999999999998732221110000 0 000000
Q ss_pred cCC-------CCCCcCCeEEEEEeeeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecC---CCceeeEEEe
Q 003360 65 NLG-------YKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPL---SEPCIDMEII 134 (826)
Q Consensus 65 ~~~-------~~~~~~pI~~l~W~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~---~~~~~d~~~l 134 (826)
++. ...+..+|..+.|.. ++.++++|+.+ ..+.+|.+........+...-.. ..+..+....
T Consensus 729 d~~~~~~~~~~~~h~~~v~~~~~sp----~~~~l~s~s~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1249)
T 3sfz_A 729 DLNQKECRNTMFGHTNSVNHCRFSP----DDELLASCSAD----GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800 (1249)
T ss_dssp ETTSSSEEEEECCCSSCEEEEEECS----STTEEEEEESS----SEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred ECCCcchhheecCCCCCEEEEEEec----CCCEEEEEECC----CeEEEEeCCCCcccceecccccccccCCccccccce
Confidence 000 112345666666654 44556655553 34556655443322222110000 0000000000
Q ss_pred cCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CC
Q 003360 135 SSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DE 213 (826)
Q Consensus 135 ~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~ 213 (826)
. ......++.. .++.+..|.+.+||... ..........|...|++++|+|+++.+++++ |+
T Consensus 801 v-~~~~~s~dg~-~l~~~~~~~v~~~d~~~----------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 862 (1249)
T 3sfz_A 801 V-KCCSWSADGD-KIIVAAKNKVLLFDIHT----------------SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY 862 (1249)
T ss_dssp B-CCCCBCTTSS-EEEEEETTEEEEEETTT----------------CCEEEEEECSSSSCCCEEEECSSTTEEEEECSSS
T ss_pred E-EEEEECCCCC-EEEEEcCCcEEEEEecC----------------CCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCC
Confidence 0 0011112233 34455579999999876 1222233458899999999999999999998 99
Q ss_pred cEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCc------eee------------ee----
Q 003360 214 DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPL------FLL------------IL---- 269 (826)
Q Consensus 214 ~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~------~~~------------i~---- 269 (826)
.+++|+...........+|.+.|.+ |+|++++|++|+.||+|++||..... ... +.
T Consensus 863 ~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1249)
T 3sfz_A 863 CVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDN 942 (1249)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEES
T ss_pred eEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecC
Confidence 9999977654444334789999999 99999999999999999999962110 000 00
Q ss_pred -----ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 270 -----SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 270 -----~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
............+...|++++|+|++.++++|+.||.|++|++..+... .....
T Consensus 943 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~---------------------~~~~~ 1001 (1249)
T 3sfz_A 943 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF---------------------SSGVG 1001 (1249)
T ss_dssp SSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE---------------------EECCC
T ss_pred CcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee---------------------eeccc
Confidence 0000000001123468999999999999999999999999999854321 23345
Q ss_pred ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 345 INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
|.+.|++++|+|+|.+|++|+.||.|++||+.++.++. ...|...|.++.|.+ +..+++++.|++|++|
T Consensus 1002 h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~v~~~~~~~-------~~~l~~~~~dg~v~vw 1070 (1249)
T 3sfz_A 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQ-------DSRLLSWSFDGTVKVW 1070 (1249)
T ss_dssp CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC----CBCCSSCEEEEEECS-------SSEEEEEESSSEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE----EecCCCcEEEEEEcC-------CCcEEEEECCCcEEEE
Confidence 67889999999999999999999999999999998772 237888999999998 5678999999999999
Q ss_pred ECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCC-CEEEEeecCcEEEEecccccc
Q 003360 425 DSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQ-WFVLLCSEKAACAYSLSHAVQ 503 (826)
Q Consensus 425 d~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vv~~se~~irv~sl~~~~~ 503 (826)
|..+++.+..+..|... +.++.+ ++++ .+++.+.++.+++|++..
T Consensus 1071 d~~~~~~~~~~~~~~~~---v~~~~~----------------------------s~d~~~l~s~s~d~~v~iwd~~~--- 1116 (1249)
T 3sfz_A 1071 NVITGRIERDFTCHQGT---VLSCAI----------------------------SSDATKFSSTSADKTAKIWSFDL--- 1116 (1249)
T ss_dssp ETTTTCCCEEEECCSSC---CCCEEE----------------------------CSSSSSCEEECCSSCCCEECSSS---
T ss_pred ECCCCceeEEEcccCCc---EEEEEE----------------------------CCCCCEEEEEcCCCcEEEEECCC---
Confidence 99999988887555432 222222 2232 455666677999999873
Q ss_pred ccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccccccccceeecCCCCCCCcccceeccCCCc
Q 003360 504 GVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGE 583 (826)
Q Consensus 504 g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~~~~~~~~~~~~~s~~G~ 583 (826)
.+.+.....+ ..... .+..++.+..+++...+|.|++|.+.+.+.+....-...... ..........+++++||.
T Consensus 1117 --~~~~~~l~~h-~~~v~-~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~fs~dg~ 1191 (1249)
T 3sfz_A 1117 --LSPLHELKGH-NGCVR-CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG-TATHGGWVTDVCFSPDSK 1191 (1249)
T ss_dssp --SSCSBCCCCC-SSCEE-EEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--------CCSCCCEEEECTTSS
T ss_pred --cceeeeeccC-CCcEE-EEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccccc-ccccCceEEEEEECCCCC
Confidence 2233332222 11111 111226677889999999999999998877665210000000 001134456678888888
Q ss_pred EEEEcC
Q 003360 584 LIMVNG 589 (826)
Q Consensus 584 i~~~~g 589 (826)
.++..+
T Consensus 1192 ~l~s~~ 1197 (1249)
T 3sfz_A 1192 TLVSAG 1197 (1249)
T ss_dssp CEEEES
T ss_pred EEEECC
Confidence 777665
No 26
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=3.8e-28 Score=261.51 Aligned_cols=242 Identities=13% Similarity=0.174 Sum_probs=185.1
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
..|...|++++|+|+++.+++++ |+.+++|+...........+|.+.|.+ |+|++++|++|+.||+|++||+.....
T Consensus 62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 141 (312)
T 4ery_A 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence 34666789999999999999998 999999987654444333678999988 999999999999999999999954331
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
+.. +..|..+|++++|+|++.+|++|+.||.|++||++.+... . .....+
T Consensus 142 --~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-----------------~---~~~~~~ 191 (312)
T 4ery_A 142 --LKT--------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-----------------K---TLIDDD 191 (312)
T ss_dssp --EEE--------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-----------------E---EECCSS
T ss_pred --EEE--------ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-----------------e---EEeccC
Confidence 122 2357789999999999999999999999999999854321 0 111233
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCee--EEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIV--SLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~--sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
..+|.+++|+|++.+|++|+.||.|++||+++++++.... +|...+. ...|.+. ++.+|++|+.||.|++
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~l~sg~~dg~i~v 263 (312)
T 4ery_A 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT---GHKNEKYCIFANFSVT-----GGKWIVSGSEDNLVYI 263 (312)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC---SSCCSSSCCCEEEECS-----SSCEEEECCTTSCEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE---ecCCceEEEEEEEEeC-----CCcEEEEECCCCEEEE
Confidence 5679999999999999999999999999999998875543 3333322 2334432 5889999999999999
Q ss_pred EECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee---cCcEEEEecc
Q 003360 424 LDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS---EKAACAYSLS 499 (826)
Q Consensus 424 wd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s---e~~irv~sl~ 499 (826)
||+.+++.+..+..|.. .+.++. +++++.+++.++ |+.|++|+..
T Consensus 264 wd~~~~~~~~~~~~h~~---~v~~~~----------------------------~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 264 WNLQTKEIVQKLQGHTD---VVISTA----------------------------CHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EETTTCCEEEEECCCSS---CEEEEE----------------------------ECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EECCCchhhhhhhccCC---cEEEEe----------------------------ecCcCCceEEEEccCCccEEEecCC
Confidence 99999999888755542 333333 334556666664 6789999863
No 27
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=3.1e-28 Score=264.13 Aligned_cols=295 Identities=13% Similarity=0.104 Sum_probs=214.1
Q ss_pred cccccccccceEEEecCCC-CCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCC
Q 003360 7 QSVYHETKQVTSACWACPI-GSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADG 85 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~-g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~ 85 (826)
.++..|...|++++|. |+ +.+||||+.||+|++||+.+..... ..+...+ ..+..+|..+.|..
T Consensus 32 ~tL~GH~~~V~~v~~s-p~~~~~l~S~s~D~~i~vWd~~~~~~~~-------~~~~~~l----~~h~~~V~~~~~s~--- 96 (340)
T 4aow_A 32 GTLKGHNGWVTQIATT-PQFPDMILSASRDKTIIMWKLTRDETNY-------GIPQRAL----RGHSHFVSDVVISS--- 96 (340)
T ss_dssp EEECCCSSCEEEEEEC-TTCTTEEEEEETTSCEEEEEECCSSSCS-------EEEEEEE----CCCSSCEEEEEECT---
T ss_pred EEECCccCCEEEEEEe-CCCCCEEEEEcCCCeEEEEECCCCCccc-------ceeeEEE----eCCCCCEEEEEECC---
Confidence 3566788999999995 55 7899999999999999998751110 0111111 12344566665543
Q ss_pred CCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhH
Q 003360 86 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 165 (826)
Q Consensus 86 ~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i 165 (826)
++.++ +.++.+|.+.+|+....
T Consensus 97 -dg~~l---------------------------------------------------------~s~~~d~~i~~~~~~~~ 118 (340)
T 4aow_A 97 -DGQFA---------------------------------------------------------LSGSWDGTLRLWDLTTG 118 (340)
T ss_dssp -TSSEE---------------------------------------------------------EEEETTSEEEEEETTTT
T ss_pred -CCCEE---------------------------------------------------------EEEcccccceEEeeccc
Confidence 23333 34444455556655431
Q ss_pred HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec-ccccCCccee--eCC
Q 003360 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSK 241 (826)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~ 241 (826)
........+...+....+++++..+++++ |+.+++|+......... ..+|...+.+ +++
T Consensus 119 -----------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 119 -----------------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp -----------------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred -----------------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence 12223456667888899999999999988 99999997654333222 3568888877 655
Q ss_pred C--CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 242 V--KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 242 ~--~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
+ ..++++|+.|++|++||+..... +.. +..|..+|++|+|+|++++|++|+.||.|++||++....
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~~~--~~~--------~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~-- 249 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANCKL--KTN--------HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH-- 249 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTTEE--EEE--------ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE--
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCce--eeE--------ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce--
Confidence 4 46899999999999999955542 122 246888999999999999999999999999999984322
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeec------ccCCCCC
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI------ASDISSG 393 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~------~~~~~~~ 393 (826)
+....+...|++++|+|++. +++++.||.|++||++++.++..... ...|...
T Consensus 250 --------------------~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (340)
T 4aow_A 250 --------------------LYTLDGGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ 308 (340)
T ss_dssp --------------------EEEEECSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred --------------------eeeecCCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence 44445567899999999986 55667799999999998887754431 2357889
Q ss_pred eeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 394 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
|++++|+| |+.+|++|+.||+|+|||+.+|.
T Consensus 309 v~~l~~s~------dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 309 CTSLAWSA------DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEECT------TSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEEECC------CCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999 69999999999999999999885
No 28
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=1.5e-27 Score=256.76 Aligned_cols=291 Identities=15% Similarity=0.210 Sum_probs=218.4
Q ss_pred cceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEe
Q 003360 183 EVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWD 259 (826)
Q Consensus 183 ~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD 259 (826)
.....+..|...|++++|+|+++.+++++ |+.+++|+...........+|..+|.+ |+|++++|++|+.||+|++||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 34566789999999999999999999988 999999976554444444789999988 999999999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
+..... +.. +..|...|.+++|+|++.+|++|+.||.|++||++.+.. .
T Consensus 94 ~~~~~~--~~~--------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------~---- 142 (312)
T 4ery_A 94 VSSGKC--LKT--------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-----------------L---- 142 (312)
T ss_dssp TTTCCE--EEE--------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-----------------E----
T ss_pred CCCCcE--EEE--------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-----------------E----
Confidence 944432 122 346788999999999999999999999999999984432 1
Q ss_pred EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 340 VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
..+..|..+|++++|+|++.+|++|+.||.|++||+++++.+... ...+..++..++|+| ++.+|++++.|+
T Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~l~~~~~d~ 214 (312)
T 4ery_A 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSP------NGKYILAATLDN 214 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE--CCSSCCCEEEEEECT------TSSEEEEEETTT
T ss_pred EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE--eccCCCceEEEEECC------CCCEEEEEcCCC
Confidence 233456778999999999999999999999999999999887443 345677899999999 599999999999
Q ss_pred cEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEec
Q 003360 420 SVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSL 498 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl 498 (826)
.|++||..+++++..+..|......... .+ ..+++.++++++ ++.|++|++
T Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~---------------------------~~~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF---------------------------SVTGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp EEEEEETTTTEEEEEECSSCCSSSCCCE-EE---------------------------ECSSSCEEEECCTTSCEEEEET
T ss_pred eEEEEECCCCcEEEEEEecCCceEEEEE-EE---------------------------EeCCCcEEEEECCCCEEEEEEC
Confidence 9999999999988887655443221111 11 112334566655 568999999
Q ss_pred cccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEE--eeceEEEecc
Q 003360 499 SHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLF--TSGKFEIRSL 547 (826)
Q Consensus 499 ~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~--~~G~I~i~sl 547 (826)
. ..+.+.....+ ...++...+ .+.+..++... .+|.|++|..
T Consensus 267 ~-----~~~~~~~~~~h-~~~v~~~~~-~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 267 Q-----TKEIVQKLQGH-TDVVISTAC-HPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp T-----TCCEEEEECCC-SSCEEEEEE-CSSSSEEEEEECTTTCCEEEEEC
T ss_pred C-----Cchhhhhhhcc-CCcEEEEee-cCcCCceEEEEccCCccEEEecC
Confidence 7 33344443322 222221111 14555565554 5899998863
No 29
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=5e-28 Score=262.65 Aligned_cols=284 Identities=18% Similarity=0.226 Sum_probs=216.0
Q ss_pred eecccCCCEEEEEEeeC----CCeEEEec-CCcEEEeccCCCceee--cccccCCccee--eCCCCCEEEEEECCCcEEE
Q 003360 187 KMPFLDSSITAMKLITG----NSFILSSA-DEDYSLLAKSVPPLLD--FETKLKDGSQS--HSKVKNLFITGHSDGAINF 257 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~----~~~l~~~~-d~~i~~w~~~~~~~~~--~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVri 257 (826)
.+..|...|++++|+++ +..+++|+ |++|++|+........ ...+|..+|.+ +++++.++++|+.||+|++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l 106 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 34689999999999875 56899998 9999999754332211 13689999999 9999999999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
||+..... +..+ ..|...|.+++|+|++++|++|+.||.|++|+++.+.. .
T Consensus 107 Wd~~~~~~--~~~~--------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-----------------~-- 157 (321)
T 3ow8_A 107 WDLENGKQ--IKSI--------DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-----------------E-- 157 (321)
T ss_dssp EETTTTEE--EEEE--------ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-----------------E--
T ss_pred EECCCCCE--EEEE--------eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-----------------e--
Confidence 99954442 1222 34667889999999999999999999999999984432 1
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
.....+...|.+++|+|+|++||+|+.||.|++||+++++++... .+|..+|.+++|+| ++.+|++|+.
T Consensus 158 --~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~sp------d~~~l~s~s~ 226 (321)
T 3ow8_A 158 --YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL---EGHAMPIRSLTFSP------DSQLLVTASD 226 (321)
T ss_dssp --EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCCCEEEECT------TSCEEEEECT
T ss_pred --EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE---cccCCceeEEEEcC------CCCEEEEEcC
Confidence 233445667999999999999999999999999999999988554 47888999999999 6999999999
Q ss_pred CCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe-ecCcEEEE
Q 003360 418 DSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC-SEKAACAY 496 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-se~~irv~ 496 (826)
|++|++||..+++++.++..|.. .+.++.+ .+++.+++.+ .|+.|+||
T Consensus 227 dg~i~iwd~~~~~~~~~~~~h~~---~v~~~~~----------------------------sp~~~~l~s~s~D~~v~iw 275 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAGTLSGHAS---WVLNVAF----------------------------CPDDTHFVSSSSDKSVKVW 275 (321)
T ss_dssp TSCEEEEETTTCCEEEEECCCSS---CEEEEEE----------------------------CTTSSEEEEEETTSCEEEE
T ss_pred CCeEEEEECCCcceeEEEcCCCC---ceEEEEE----------------------------CCCCCEEEEEeCCCcEEEE
Confidence 99999999999998887655532 2333333 3344555555 45689999
Q ss_pred eccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccC
Q 003360 497 SLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 497 sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP 548 (826)
++. ..+++.....+ ...++... -++.+..|+....+|.|++|.+|
T Consensus 276 d~~-----~~~~~~~~~~h-~~~v~~v~-~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 276 DVG-----TRTCVHTFFDH-QDQVWGVK-YNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ETT-----TTEEEEEECCC-SSCEEEEE-ECTTSSEEEEEETTCCEEEEECC
T ss_pred eCC-----CCEEEEEEcCC-CCcEEEEE-ECCCCCEEEEEeCCCeEEEEeCC
Confidence 997 34444443322 22222211 12667788999999999999987
No 30
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=1.5e-27 Score=260.90 Aligned_cols=288 Identities=10% Similarity=0.053 Sum_probs=216.1
Q ss_pred ceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeC
Q 003360 184 VMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 184 ~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~ 260 (826)
....+..|...|++++|+|+++++++++ |+.|++|+............|.+.|.+ |+|++++|++|+.||.|++||+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 4456889999999999999999999999 999999976544433333568888888 9999999999999999999999
Q ss_pred CCCc--eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 261 SCPL--FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 261 s~~~--~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
.... ... ...+..|...|+++.|++++. +++|+.||+|++||++++.. .
T Consensus 127 ~~~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~-----------------~--- 177 (340)
T 1got_B 127 KTREGNVRV--------SRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ-----------------T--- 177 (340)
T ss_dssp TTCSBSCEE--------EEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE-----------------E---
T ss_pred ccCCCccee--------EEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE-----------------E---
Confidence 4432 111 112346889999999998875 88999999999999984322 1
Q ss_pred EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 339 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
..+..|.+.|++++|+|++.++++|+.||+|++||++++.++..+ .+|...|.+++|+| ++.+|++|+.|
T Consensus 178 -~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~---~~h~~~v~~v~~~p------~~~~l~s~s~d 247 (340)
T 1got_B 178 -TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFP------NGNAFATGSDD 247 (340)
T ss_dssp -EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE---CCCSSCEEEEEECT------TSSEEEEEETT
T ss_pred -EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE---cCCcCCEEEEEEcC------CCCEEEEEcCC
Confidence 334457888999999999999999999999999999999888554 47889999999999 59999999999
Q ss_pred CcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeec-CcEEEEe
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSE-KAACAYS 497 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se-~~irv~s 497 (826)
++|++||+++++.+..+. +......+.++. +++++.+++++++ +.|+||+
T Consensus 248 ~~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~----------------------------~s~~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 248 ATCRLFDLRADQELMTYS-HDNIICGITSVS----------------------------FSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp SCEEEEETTTTEEEEEEC-CTTCCSCEEEEE----------------------------ECTTSSEEEEEETTSEEEEEE
T ss_pred CcEEEEECCCCcEEEEEc-cCCcccceEEEE----------------------------ECCCCCEEEEECCCCeEEEEE
Confidence 999999999988776652 222222233332 3345556666654 5899999
Q ss_pred ccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEec
Q 003360 498 LSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRS 546 (826)
Q Consensus 498 l~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~s 546 (826)
+.. .+.+....-+.... .. +..++.+..|+....||.|++|.
T Consensus 299 ~~~-----~~~~~~~~~h~~~v-~~-~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 299 ALK-----ADRAGVLAGHDNRV-SC-LGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTT-----CCEEEEEECCSSCE-EE-EEECTTSSCEEEEETTSCEEEEC
T ss_pred ccc-----CcEeeEeecCCCcE-EE-EEEcCCCCEEEEEcCCccEEecC
Confidence 863 22333222221111 11 11125677788888999999874
No 31
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=2.3e-28 Score=276.72 Aligned_cols=247 Identities=11% Similarity=0.061 Sum_probs=177.7
Q ss_pred cccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCCceeecccccC--Cccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 189 PFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVPPLLDFETKLK--DGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~--g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
..|...|++++|+| ++..|++++ |++|++|+........+...+. ..+.+ |++++++|++|+.||+|++||+.+
T Consensus 161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~ 240 (435)
T 4e54_B 161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG 240 (435)
T ss_dssp CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS
T ss_pred cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc
Confidence 46788899999998 678999998 9999999876544444423333 33444 899999999999999999999966
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR-VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~-~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
..+ ..+..|...|++|+|+|++. +|++|+.||+|+|||++...... .. ..
T Consensus 241 ~~~-----------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~-------------~~-----~~ 291 (435)
T 4e54_B 241 KEL-----------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA-------------SF-----LY 291 (435)
T ss_dssp CBC-----------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS-------------CC-----SB
T ss_pred cee-----------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc-------------eE-----EE
Confidence 542 12357889999999999875 78899999999999998654311 00 22
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc-CC--CCCeeEEEEeecccCCCCCcEEEEEE--
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS-DI--SSGIVSLQFETCSLQGFEKNFLVIAT-- 416 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~-~~--~~~V~sl~f~~~~~~~~d~~~l~sgs-- 416 (826)
...|...|++++|+|+|.+|++|+.||+|+|||+.++.+........ .+ ...+....|.+ ++.+++++.
T Consensus 292 ~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 365 (435)
T 4e54_B 292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP------RYNLIVVGRYP 365 (435)
T ss_dssp CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS------SSSCEEEECCC
T ss_pred eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC------CCCEEEEEEcC
Confidence 33567889999999999999999999999999999988764432111 11 11223345555 244444443
Q ss_pred ----------CCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEE
Q 003360 417 ----------KDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVL 486 (826)
Q Consensus 417 ----------~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 486 (826)
.++.|++||..+|+++..+..+.. ..+.++. .|++++.+|+
T Consensus 366 d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~--~~v~s~~---------------------------~fspdg~~la 416 (435)
T 4e54_B 366 DPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPES--SGISSLN---------------------------EFNPMGDTLA 416 (435)
T ss_dssp CTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSC--CCCCCEE---------------------------EECTTSSCEE
T ss_pred CCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCC--CcEEEEE---------------------------EECCCCCEEE
Confidence 345799999999998877532211 1222221 2445667888
Q ss_pred EeecCcEEEEecc
Q 003360 487 LCSEKAACAYSLS 499 (826)
Q Consensus 487 ~~se~~irv~sl~ 499 (826)
.++++.|+||++.
T Consensus 417 sg~d~~i~iW~~~ 429 (435)
T 4e54_B 417 SAMGYHILIWSQQ 429 (435)
T ss_dssp EECSSEEEECCCC
T ss_pred EEcCCcEEEEECC
Confidence 8889999999987
No 32
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=1.8e-27 Score=260.75 Aligned_cols=320 Identities=11% Similarity=0.053 Sum_probs=209.9
Q ss_pred eeecccCC-CEEEEEEeeCCCeEEEec-CCcEEEeccCCCce---eecccccCCccee--eCCCCCEEEEEECCCcEEEE
Q 003360 186 LKMPFLDS-SITAMKLITGNSFILSSA-DEDYSLLAKSVPPL---LDFETKLKDGSQS--HSKVKNLFITGHSDGAINFW 258 (826)
Q Consensus 186 ~~l~~h~~-~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~---~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriW 258 (826)
..++.|.. .|++++|+|+++.|++++ |++|++|+...... ..+..+|.+.|.+ |+|++++|++|+.||+|+||
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence 45678887 999999999999999998 99999997654321 1223679999999 99999999999999999999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
|........+.. +..|...|++++|+|++++|++|+.|++|++||++..... ...
T Consensus 89 ~~~~~~~~~~~~--------~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~---------------~~~-- 143 (345)
T 3fm0_A 89 KKNQDDFECVTT--------LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY---------------ECV-- 143 (345)
T ss_dssp EECCC-EEEEEE--------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE---------------EEE--
T ss_pred EccCCCeEEEEE--------ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe---------------EEE--
Confidence 995554323233 3478899999999999999999999999999999743210 110
Q ss_pred EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 339 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
.....|...|++++|+|++.+|++|+.||+|++||.+.+....... ..+|...|++++|+| ++.+|++|+.|
T Consensus 144 -~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~-~~~h~~~v~~l~~sp------~g~~l~s~s~D 215 (345)
T 3fm0_A 144 -SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT-LEGHESTVWSLAFDP------SGQRLASCSDD 215 (345)
T ss_dssp -EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEE-ECCCSSCEEEEEECT------TSSEEEEEETT
T ss_pred -EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEE-ecCCCCceEEEEECC------CCCEEEEEeCC
Confidence 2334567789999999999999999999999999998876432222 257899999999999 69999999999
Q ss_pred CcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCC-CCEEEEeecCcEEEEe
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPK-QWFVLLCSEKAACAYS 497 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~se~~irv~s 497 (826)
++|++|+...+.......... ......++..+.+. . ......+ .+.+. ..++..+.++.+++|+
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------h------~~~v~~v-~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSG-SDPSWKCICTLSGF-------H------SRTIYDI-AWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC----CEEEEEEEECSS-------C------SSCEEEE-EECTTTCCEEEEETTSCEEEEE
T ss_pred CeEEEeccccCCCCccceeec-cCCccceeEEecCC-------C------CCcEEEE-EEecCCCEEEEEeCCCeEEEEE
Confidence 999999964322110000000 00000111111100 0 0000011 12233 3466677778999999
Q ss_pred cccccccccee--eeee--ecCCCCceeeEeeeeCCc-eEEEEEEeeceEEEeccCCcccccc
Q 003360 498 LSHAVQGVKKV--LYKK--KFHSSSCCWASTFYSGSD-VGLMLLFTSGKFEIRSLPELSLLKE 555 (826)
Q Consensus 498 l~~~~~g~~k~--~~k~--~~~~~~c~~~~~~~~~~~-~~lv~~~~~G~I~i~slP~L~~l~~ 555 (826)
+.......... +... ..+ ..-+....+ .+.+ ..|+....||.|++|.+...+.+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~-~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 281 EDPNSDPQQPTFSLTAHLHQAH-SQDVNCVAW-NPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp ECTTSCTTSCCEEEEEEETTSS-SSCEEEEEE-CSSSTTEEEEEETTSCEEEEEECC------
T ss_pred eCCCCCcceeeEEEEeeecccc-cCcEeEeEE-eCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 86321100000 0000 111 111111111 1344 4678888999999999887665543
No 33
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.96 E-value=4.9e-27 Score=254.40 Aligned_cols=285 Identities=12% Similarity=0.154 Sum_probs=218.1
Q ss_pred eeeecccCCCEEEEEEeeCC-CeEEEec-CCcEEEeccCCC------ceeecccccCCccee--eCCCCCEEEEEECCCc
Q 003360 185 MLKMPFLDSSITAMKLITGN-SFILSSA-DEDYSLLAKSVP------PLLDFETKLKDGSQS--HSKVKNLFITGHSDGA 254 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~-~~l~~~~-d~~i~~w~~~~~------~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGt 254 (826)
...+..|...|++++|+|++ ..+++++ |+++++|+.... ....+ .+|.+.|.+ |++++++|++|+.||+
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 34578999999999999976 7888888 999999964321 12233 689999988 9999999999999999
Q ss_pred EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 255 INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 255 VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
|++||+..... +. .+..|...|++++|+|++.+|++|+.||+|++||++.. .
T Consensus 89 v~~wd~~~~~~--~~--------~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~------------------~ 140 (319)
T 3frx_A 89 LRLWDVATGET--YQ--------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ------------------C 140 (319)
T ss_dssp EEEEETTTTEE--EE--------EEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC------------------E
T ss_pred EEEEECCCCCe--eE--------EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------e
Confidence 99999955442 11 23478899999999999999999999999999998621 1
Q ss_pred EEEEEEEEeeccCCeEEEEEccC------CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCC
Q 003360 335 HIIHSVKVMKINGSIISLNMNRN------SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~------g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d 408 (826)
. .....|...|.+++|+|. +..+++|+.||+|++||+++.++.... .+|..+|.+++|+| +
T Consensus 141 ~----~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~sp------~ 207 (319)
T 3frx_A 141 L----ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASP------D 207 (319)
T ss_dssp E----EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE---CCCCSCEEEEEECT------T
T ss_pred E----EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee---cCCCCcEEEEEEcC------C
Confidence 1 334557788999999985 458999999999999999998877544 37899999999999 6
Q ss_pred CcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe
Q 003360 409 KNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC 488 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~ 488 (826)
+.+|++|+.|++|++||+.+++.+.++..+ ..+.++. +++++.+++++
T Consensus 208 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~v~~~~----------------------------~sp~~~~la~~ 255 (319)
T 3frx_A 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQ----DEVFSLA----------------------------FSPNRYWLAAA 255 (319)
T ss_dssp SSEEEEEETTCEEEEEETTTTEEEEEEECC----SCEEEEE----------------------------ECSSSSEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC----CcEEEEE----------------------------EcCCCCEEEEE
Confidence 999999999999999999999988776432 2233333 34566788888
Q ss_pred ecCcEEEEeccccccccceeeeeeecCCC------CceeeEeeeeCCceEEEEEEeeceEEEeccC
Q 003360 489 SEKAACAYSLSHAVQGVKKVLYKKKFHSS------SCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 489 se~~irv~sl~~~~~g~~k~~~k~~~~~~------~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP 548 (826)
+++.+++|++.. ...+........ .....++.-++.+..|+....+|.|++|.+.
T Consensus 256 ~~~~i~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 256 TATGIKVFSLDP-----QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp ETTEEEEEEETT-----EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred cCCCcEEEEeCc-----CeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 899999999873 222222110000 0001112223778899999999999999864
No 34
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.96 E-value=1.9e-26 Score=281.35 Aligned_cols=430 Identities=12% Similarity=0.101 Sum_probs=290.1
Q ss_pred ccccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeee
Q 003360 4 NVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYA 83 (826)
Q Consensus 4 ~~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~ 83 (826)
.+...+..+...|++++| +|+|.+||+|+.||.|++||+.++.... .+ ..+..+|..+.|+.
T Consensus 4 ~~~~~~~~h~~~v~~i~~-sp~~~~la~~~~~g~v~iwd~~~~~~~~------------~~----~~~~~~v~~~~~s~- 65 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDF-HPTEPWVLTTLYSGRVEIWNYETQVEVR------------SI----QVTETPVRAGKFIA- 65 (814)
T ss_dssp CCEEEEEEECSCEEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEEE------------EE----ECCSSCEEEEEEEG-
T ss_pred ccceeeecCCCceEEEEE-CCCCCEEEEEeCCCEEEEEECCCCceEE------------EE----ecCCCcEEEEEEeC-
Confidence 345566778889999999 5799999999999999999998862111 11 12456899999987
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
++.++++|+.+ ..+.+|.+....... .+ ....+.+..+.+.+ +...+++++.+|.+.+||..
T Consensus 66 ---~~~~l~~~~~d----g~i~vw~~~~~~~~~--~~-~~~~~~v~~~~~s~--------~~~~l~~~~~dg~i~vw~~~ 127 (814)
T 3mkq_A 66 ---RKNWIIVGSDD----FRIRVFNYNTGEKVV--DF-EAHPDYIRSIAVHP--------TKPYVLSGSDDLTVKLWNWE 127 (814)
T ss_dssp ---GGTEEEEEETT----SEEEEEETTTCCEEE--EE-ECCSSCEEEEEECS--------SSSEEEEEETTSEEEEEEGG
T ss_pred ---CCCEEEEEeCC----CeEEEEECCCCcEEE--EE-ecCCCCEEEEEEeC--------CCCEEEEEcCCCEEEEEECC
Confidence 56667777663 356666654333211 11 12344555555443 23567888899999999986
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCC-ceeecccccCCccee--
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVP-PLLDFETKLKDGSQS-- 238 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~-~~~~~~~~h~g~V~~-- 238 (826)
. .......+..|...|++++|+| ++..+++++ |+.|++|+.... ....+...+..++.+
T Consensus 128 ~----------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~ 191 (814)
T 3mkq_A 128 N----------------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191 (814)
T ss_dssp G----------------TSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEE
T ss_pred C----------------CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEE
Confidence 5 1123445678999999999999 888999988 999999975432 333333445577777
Q ss_pred eCC--CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 239 HSK--VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~--~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
|+| ++++|++|+.||+|++||...... +.. +..|...|++++|+|++.+|++|+.||.|++||+.++.
T Consensus 192 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 192 YYPLPDKPYMITASDDLTIKIWDYQTKSC--VAT--------LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp ECCSTTCCEEEEECTTSEEEEEETTTTEE--EEE--------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCcE--EEE--------EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 888 999999999999999999955442 122 23577899999999999999999999999999998432
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC--EEEEEecCCeEEEEecCCCeeEEeee---------
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ--HLAVGSDQGYVYLLDTEGPTVLYQKH--------- 385 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~--~lasGs~dG~V~vwD~~~~~~l~~~~--------- 385 (826)
. . .....+...|.+++|+|++. ++++|+ ++.+.+|++..........
T Consensus 262 ~-----------------~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 319 (814)
T 3mkq_A 262 V-----------------E----KTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSG 319 (814)
T ss_dssp E-----------------E----EEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEEC
T ss_pred E-----------------E----EEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEEC
Confidence 2 1 22334567899999999986 466665 5557888876432211110
Q ss_pred -------------------------------cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 386 -------------------------------IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 386 -------------------------------~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
....+...+.++.|+| ++.++++++ |+.+.+|+.........
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp------dg~~la~~~-~~~~~i~~~~~~~~~~~ 392 (814)
T 3mkq_A 320 GKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP------NGRFVTVVG-DGEYVIYTALAWRNKAF 392 (814)
T ss_dssp CTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT------TSSEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred cccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC------CCCEEEEec-CCEEEEEECccccccCC
Confidence 0012344678999998 689999888 99999999874433221
Q ss_pred eeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCC-EEEEeecCcEEEEeccccccccceeeeeee
Q 003360 435 NLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQW-FVLLCSEKAACAYSLSHAVQGVKKVLYKKK 513 (826)
Q Consensus 435 ~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vv~~se~~irv~sl~~~~~g~~k~~~k~~ 513 (826)
+.+.++. |++++. +++.+.++.+++|+.- .++...+..+.
T Consensus 393 --------~~i~~~~----------------------------~spdg~~la~~~~~g~v~l~~~~---~~~~~~v~~~~ 433 (814)
T 3mkq_A 393 --------GKCQDFV----------------------------WGPDSNSYALIDETGQIKYYKNF---KEVTSWSVPMH 433 (814)
T ss_dssp --------EECSEEE----------------------------ECTTSSCEEEECTTCCEEEEETT---EECTTCCCCCS
T ss_pred --------CceEEEE----------------------------EeCCCCeEEEEeCCCcEEEEECC---CCccceEEcCC
Confidence 1112222 233433 5555566789999643 12221222222
Q ss_pred cCCCCceeeEeeeeCCc---eEEEEEEeeceEEEeccCCccccccccccceeecCCCCCCCcccceeccCCCcEEEEc
Q 003360 514 FHSSSCCWASTFYSGSD---VGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVN 588 (826)
Q Consensus 514 ~~~~~c~~~~~~~~~~~---~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~~~~~~~~~~~~~s~~G~i~~~~ 588 (826)
+. +.+ ..|+....+|.|+++.+...+.+... ... ...+++++||+.++..
T Consensus 434 ~s------------~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~-----~~~--------~~~v~~s~dg~~la~~ 486 (814)
T 3mkq_A 434 SA------------IDRLFSGALLGVKSDGFVYFFDWDNGTLVRRI-----DVN--------AKDVIWSDNGELVMIV 486 (814)
T ss_dssp SC------------CCEEECSSSEEEEETTEEEEECTTTCCEEEEE-----SSC--------EEEEEECTTSSEEEEE
T ss_pred cC------------ccceecceEEEEecCCEEEEEECCcCcEEEEE-----ecC--------CCEEEEcCCCCEEEEE
Confidence 21 222 25667788999999999887776653 111 1266788888877777
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-27 Score=264.05 Aligned_cols=330 Identities=12% Similarity=0.127 Sum_probs=231.2
Q ss_pred ccccceEEEecCCCCC-EEEEEEecCcEEEEeC----CCccccccccccccccccccccCC------CCCCcCCeEEEEE
Q 003360 12 ETKQVTSACWACPIGS-KVAVGYSNGEILIWGV----PSILNLKTEECGTQITPICKLNLG------YKLDKIPISSLKW 80 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~-~latg~~DGsI~iWd~----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~pI~~l~W 80 (826)
+...|++++| +|+|. +||+|+.||.|++||+ .++...... .+...+... ...+..+|..+.|
T Consensus 44 ~~~~v~~~~~-s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 44 KLDNIVSSTW-NPLDESILAYGEKNSVARLARIVETDQEGKKYWKL------TIIAELRHPFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp ECSCCSEEEE-CSSCTTEEEEEETBTEEEEEEEEEC------CEEE------EEEEEEECCCCCC------CBCEEEEEE
T ss_pred ccCceEEEEE-CCCCCcEEEEecCCceEEEEEEecccCCccccccc------cccccccccccccccccCCCCceEEEEE
Confidence 4579999999 58999 9999999999999999 665210000 001111111 1124568999999
Q ss_pred eeeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEe
Q 003360 81 VYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAF 160 (826)
Q Consensus 81 ~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~ 160 (826)
.. ++.++++|+.+ ..+.++.. .. +.+.........+..+.+.+ +...+++++.+|.+.+|
T Consensus 117 s~----~~~~l~~~~~d----g~i~i~~~---~~-~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 117 SH----DGNSIVTGVEN----GELRLWNK---TG-ALLNVLNFHRAPIVSVKWNK--------DGTHIISMDVENVTILW 176 (425)
T ss_dssp CT----TSSEEEEEETT----SCEEEEET---TS-CEEEEECCCCSCEEEEEECT--------TSSEEEEEETTCCEEEE
T ss_pred cC----CCCEEEEEeCC----CeEEEEeC---CC-CeeeeccCCCccEEEEEECC--------CCCEEEEEecCCeEEEE
Confidence 75 46666666653 24555541 11 11111112344555555543 23567888899999999
Q ss_pred cchhHHHHHhhccCCCCCCCCccceeeecccCCC---------------EEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 161 DDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSS---------------ITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 161 d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~---------------Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
|...-. ....+..+... |.++.|++++. +++++ ++.+.+|+.....
T Consensus 177 d~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~ 238 (425)
T 1r5m_A 177 NVISGT-----------------VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKT 238 (425)
T ss_dssp ETTTTE-----------------EEEEECCC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSS
T ss_pred ECCCCc-----------------EEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCc
Confidence 986521 11122333333 89999999866 55555 9999999766544
Q ss_pred eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD 302 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs 302 (826)
.......|.+.|.+ |+|++++|++|+.||.|++||+..... ...+..|...|++++|+|++ .|++++
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------~~~~~~~~~~i~~~~~~~~~-~l~~~~ 307 (425)
T 1r5m_A 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS----------QNCFYGHSQSIVSASWVGDD-KVISCS 307 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC----------SEEECCCSSCEEEEEEETTT-EEEEEE
T ss_pred eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc----------ceEecCCCccEEEEEECCCC-EEEEEe
Confidence 33333678899988 999999999999999999999944331 11123577899999999999 999999
Q ss_pred CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe---
Q 003360 303 QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT--- 379 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~--- 379 (826)
.||.|++||++.... . .....+...|++++|+|++.+|++|+.||.|++||+.++.
T Consensus 308 ~d~~i~i~d~~~~~~-----------------~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~ 366 (425)
T 1r5m_A 308 MDGSVRLWSLKQNTL-----------------L----ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKS 366 (425)
T ss_dssp TTSEEEEEETTTTEE-----------------E----EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--
T ss_pred CCCcEEEEECCCCcE-----------------e----EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccce
Confidence 999999999974322 1 2333467789999999999999999999999999998877
Q ss_pred -----------------eEEeeecccCCCC--CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 380 -----------------VLYQKHIASDISS--GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 380 -----------------~l~~~~~~~~~~~--~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++... ..|.. .|+++.|++ ++.+|++++.||.|++|++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 367 RSLYGNRDGILNPLPIPLYASY---QSSQDNDYIFDLSWNC------AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ------------CEECCEEEEE---CCTTCCCCEEEEEECT------TSSEEEEEESSSCCEEEECC
T ss_pred eeeecccccccCcccchhhhhh---cCcccCCceEEEEccC------CCceEEEEecCceEEEEeec
Confidence 55333 35654 999999999 58999999999999999986
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=3.7e-27 Score=254.77 Aligned_cols=324 Identities=13% Similarity=0.137 Sum_probs=245.2
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceE
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 90 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~l 90 (826)
.+...|.+++| +|||..++++..++.+..|+..... .++. ...+..+|..+.|.. ++.+
T Consensus 7 ~~~~~v~~~~~-s~dg~~~~~~~~~~~~~~~~~~~~~-----------~~~~-----~~~h~~~v~~~~~~~----~~~~ 65 (337)
T 1gxr_A 7 MGSKPAYSFHV-TADGQMQPVPFPPDALIGPGIPRHA-----------RQIN-----TLNHGEVVCAVTISN----PTRH 65 (337)
T ss_dssp EEEEECCEEEE-CSSSCEEECCCCTTSSSSTTCCSEE-----------EEEE-----EECCSSCCCEEEECS----SSSE
T ss_pred ccCCceeEEEE-CCCCCEEEeecCCCcEeccccCCcc-----------ccce-----eccCCCceEEEEEec----CCcE
Confidence 45678999999 6899999999999988888554420 0111 113556888998875 5667
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEE-Eee-cCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHH
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTK-LAL-PLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERY 168 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~-~~l-~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~ 168 (826)
++++++ ..+.++.+........+. +.. .....+..+.+.+ +...+++++.+|.+.+||...-
T Consensus 66 l~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~~~d~~~~--- 129 (337)
T 1gxr_A 66 VYTGGK-----GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--------DGCTLIVGGEASTLSIWDLAAP--- 129 (337)
T ss_dssp EEEECB-----SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--------TSSEEEEEESSSEEEEEECCCC---
T ss_pred EEEcCC-----CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC--------CCCEEEEEcCCCcEEEEECCCC---
Confidence 776663 356777765543222221 111 2344555555543 2356788888999999998651
Q ss_pred HhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCE
Q 003360 169 LLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNL 245 (826)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~ 245 (826)
.......+..|...|++++|+++++.+++++ |+.+++|+............|.+.+.+ |+|++++
T Consensus 130 ------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 130 ------------TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp --------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred ------------CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCE
Confidence 1113345678999999999999999999988 999999986654433333668899988 9999999
Q ss_pred EEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEE
Q 003360 246 FITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLS 325 (826)
Q Consensus 246 l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~ 325 (826)
|++++.||.|++||+..... +..+ .+...|.+++|+|++.+|++++.||.|++||++....
T Consensus 198 l~~~~~dg~i~~~d~~~~~~--~~~~---------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-------- 258 (337)
T 1gxr_A 198 LWTGGLDNTVRSWDLREGRQ--LQQH---------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-------- 258 (337)
T ss_dssp EEEEETTSEEEEEETTTTEE--EEEE---------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--------
T ss_pred EEEEecCCcEEEEECCCCce--Eeee---------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe--------
Confidence 99999999999999955442 1112 2457899999999999999999999999999984322
Q ss_pred EeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccC
Q 003360 326 FTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQ 405 (826)
Q Consensus 326 i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~ 405 (826)
.....+...|++++|+|++.+|++++.||.|++||+.+++.+... .+...|.++.|++
T Consensus 259 --------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~----~~~~~v~~~~~s~---- 316 (337)
T 1gxr_A 259 --------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISV---- 316 (337)
T ss_dssp --------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----ECSSCEEEEEECT----
T ss_pred --------------EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe----cCCCcEEEEEECC----
Confidence 344566788999999999999999999999999999999887433 4678999999999
Q ss_pred CCCCcEEEEEECCCcEEEEEC
Q 003360 406 GFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 406 ~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
++.+|++++.||.|++|++
T Consensus 317 --~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 317 --DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp --TSCEEEEEETTSCEEEEEE
T ss_pred --CCCEEEEecCCCeEEEEEE
Confidence 5899999999999999996
No 37
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=1.4e-26 Score=254.85 Aligned_cols=294 Identities=7% Similarity=0.004 Sum_probs=215.8
Q ss_pred cceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEe
Q 003360 183 EVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWD 259 (826)
Q Consensus 183 ~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD 259 (826)
.....+..|...|++++|+|+++.+++++ |+++++|+............|...|.+ |+|++.++++|+.|+.|++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 34556789999999999999999999999 999999976543333222557777877 999999999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
+...... ........+..|...|++++|+|++..|++|+.||+|++||++++.. .
T Consensus 135 ~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-----------------~---- 189 (354)
T 2pbi_B 135 LTFDKNE----NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL-----------------L---- 189 (354)
T ss_dssp CCCCTTC----CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------------E----
T ss_pred Eeccccc----cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-----------------E----
Confidence 8432100 00011223457889999999999999999999999999999985432 1
Q ss_pred EEEeeccCCeEEEEEcc--CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 340 VKVMKINGSIISLNMNR--NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~--~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
..+..|...|++++|+| +|.+|++|+.||+|++||+++++++... ..|...|.+++|+| ++.+|++|+.
T Consensus 190 ~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~---~~h~~~v~~v~~~p------~~~~l~s~s~ 260 (354)
T 2pbi_B 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF---ETHESDVNSVRYYP------SGDAFASGSD 260 (354)
T ss_dssp EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECT------TSSEEEEEET
T ss_pred EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCCeEEEEEeC------CCCEEEEEeC
Confidence 23445778899999987 5789999999999999999999988554 47889999999999 5899999999
Q ss_pred CCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEE
Q 003360 418 DSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAY 496 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~ 496 (826)
|++|++||+++++.+..+..+. ....+.++. +++++.++++++ ++.|+||
T Consensus 261 D~~v~lwd~~~~~~~~~~~~~~-~~~~~~~~~----------------------------~s~~g~~l~~g~~d~~i~vw 311 (354)
T 2pbi_B 261 DATCRLYDLRADREVAIYSKES-IIFGASSVD----------------------------FSLSGRLLFAGYNDYTINVW 311 (354)
T ss_dssp TSCEEEEETTTTEEEEEECCTT-CCSCEEEEE----------------------------ECTTSSEEEEEETTSCEEEE
T ss_pred CCeEEEEECCCCcEEEEEcCCC-cccceeEEE----------------------------EeCCCCEEEEEECCCcEEEE
Confidence 9999999999887766542211 111122222 344556666665 4589999
Q ss_pred eccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEec
Q 003360 497 SLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRS 546 (826)
Q Consensus 497 sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~s 546 (826)
++.. .+.+....-+ ..-+. .+..++.+..|+....||.|++|+
T Consensus 312 d~~~-----~~~~~~l~~h-~~~v~-~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 312 DVLK-----GSRVSILFGH-ENRVS-TLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ETTT-----CSEEEEECCC-SSCEE-EEEECTTSSCEEEEETTSEEEEEC
T ss_pred ECCC-----CceEEEEECC-CCcEE-EEEECCCCCEEEEEcCCCCEEecC
Confidence 9862 2222222212 11111 111126677888889999999874
No 38
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=2.2e-27 Score=261.65 Aligned_cols=244 Identities=14% Similarity=0.181 Sum_probs=184.0
Q ss_pred ecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCce---eec-ccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPL---LDF-ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~---~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
...|...|++++|+|++..++++.|++|++|+...... ..+ ..+|.+.|.+ |+|++++|++|+.||+|++||+.
T Consensus 90 ~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~ 169 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169 (357)
T ss_dssp EEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred cCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 45688899999999998877666699999996543221 111 3479999999 99999999999999999999995
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR-VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~-~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
.... +.. +..|...|++++|+|++. +|++++.||+|++||++++.... . +
T Consensus 170 ~~~~--~~~--------~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~--------------~-----~ 220 (357)
T 4g56_B 170 QKAV--LKS--------YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT--------------R-----I 220 (357)
T ss_dssp TTEE--EEE--------ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC--------------B-----C
T ss_pred CCcE--EEE--------EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee--------------e-----e
Confidence 5542 122 346889999999999874 78999999999999998654311 0 1
Q ss_pred EEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 341 KVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
....+...|++++|+|+ +.+||+|+.||.|++||+++++++... ..|..+|++++|+|. ++.+|++|+.|+
T Consensus 221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~l~~sp~-----~~~~lasgs~D~ 292 (357)
T 4g56_B 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---AVHSQNITGLAYSYH-----SSPFLASISEDC 292 (357)
T ss_dssp CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---CCCSSCEEEEEECSS-----SSCCEEEEETTS
T ss_pred eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---eccceeEEEEEEcCC-----CCCEEEEEeCCC
Confidence 22234667999999997 468899999999999999999887554 378889999999983 246899999999
Q ss_pred cEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCC-CCCEEEEee-cCcEEEEe
Q 003360 420 SVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVP-KQWFVLLCS-EKAACAYS 497 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vv~~s-e~~irv~s 497 (826)
+|+|||..+++++..+ .|. ..+.++.+ +| ++.+++.|+ |+.|++|+
T Consensus 293 ~i~iwd~~~~~~~~~~-~H~---~~V~~vaf----------------------------sP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 293 TVAVLDADFSEVFRDL-SHR---DFVTGVAW----------------------------SPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp CEEEECTTSCEEEEEC-CCS---SCEEEEEE----------------------------CSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCcEeEEC-CCC---CCEEEEEE----------------------------eCCCCCEEEEEcCCCeEEEEE
Confidence 9999999999887664 332 33344433 33 345666555 57999999
Q ss_pred ccc
Q 003360 498 LSH 500 (826)
Q Consensus 498 l~~ 500 (826)
++.
T Consensus 341 ~~~ 343 (357)
T 4g56_B 341 LPS 343 (357)
T ss_dssp CC-
T ss_pred CCC
Confidence 973
No 39
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=5.2e-27 Score=257.25 Aligned_cols=287 Identities=13% Similarity=0.150 Sum_probs=201.6
Q ss_pred ccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCC--------c---eeecccccCCccee--eCCCCCEEEEEECCCcEE
Q 003360 190 FLDSSITAMKLITGNSFILSSADEDYSLLAKSVP--------P---LLDFETKLKDGSQS--HSKVKNLFITGHSDGAIN 256 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~--------~---~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVr 256 (826)
.|+..|++++|+|||+.+++++|.++++|+.... . .......|..+|.+ |++++ .|++|+.||+|+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~ 106 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVE 106 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred cccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence 4677899999999999999888888888863210 0 01111235677888 89985 688999999999
Q ss_pred EEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 257 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|||+........... ....|...|++|+|+|++++|++|+.||+|++||++++.. .
T Consensus 107 lWd~~~~~~~~~~~~------~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~-----------------~- 162 (344)
T 4gqb_B 107 LWELDENETLIVSKF------CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV-----------------L- 162 (344)
T ss_dssp EEEECTTSSCEEEEE------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------------E-
T ss_pred EEeccCCCceeEeec------cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-----------------E-
Confidence 999944332111111 1246889999999999999999999999999999984422 1
Q ss_pred EEEEEEeeccCCeEEEEEccCCC-EEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 337 IHSVKVMKINGSIISLNMNRNSQ-HLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
..+..|...|++++|++++. ++++|+.||+|++||+++++.+..... ..+...+.+++|++. ++.+|++|
T Consensus 163 ---~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~-----~~~~l~sg 233 (344)
T 4gqb_B 163 ---SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQ-----QSEVFVFG 233 (344)
T ss_dssp ---EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSS-----CTTEEEEE
T ss_pred ---EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec-ceeeccceeeeecCC-----CCcceEEe
Confidence 33445788999999999884 789999999999999999988754432 245667899999984 47789999
Q ss_pred ECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCC-CEEEEee-cCcE
Q 003360 416 TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQ-WFVLLCS-EKAA 493 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vv~~s-e~~i 493 (826)
+.|++|++||.++++++.++..|.. .+.++.+ ++++ .+++.++ |+.|
T Consensus 234 ~~dg~v~~wd~~~~~~~~~~~~h~~---~v~~v~f----------------------------sp~g~~~lasgs~D~~i 282 (344)
T 4gqb_B 234 DENGTVSLVDTKSTSCVLSSAVHSQ---CVTGLVF----------------------------SPHSVPFLASLSEDCSL 282 (344)
T ss_dssp ETTSEEEEEESCC--CCEEEECCSS---CEEEEEE----------------------------CSSSSCCEEEEETTSCE
T ss_pred ccCCcEEEEECCCCcEEEEEcCCCC---CEEEEEE----------------------------ccCCCeEEEEEeCCCeE
Confidence 9999999999999999988866643 2333333 2332 4555554 5689
Q ss_pred EEEeccccccccceeeeeeecCCCCceeeEeeeeCCc-eEEEEEEeeceEEEeccCC
Q 003360 494 CAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSD-VGLMLLFTSGKFEIRSLPE 549 (826)
Q Consensus 494 rv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~-~~lv~~~~~G~I~i~slP~ 549 (826)
+||++.. .+.+ +..-+ ...+....+ ++.+ ..++....||.|+++.+|.
T Consensus 283 ~vwd~~~-----~~~~-~~~~H-~~~V~~v~~-sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 283 AVLDSSL-----SELF-RSQAH-RDFVRDATW-SPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EEECTTC-----CEEE-EECCC-SSCEEEEEE-CSSSTTEEEEEETTSCEEEEECCC
T ss_pred EEEECCC-----CcEE-EEcCC-CCCEEEEEE-eCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999873 2222 22222 222222112 2333 3455667799999999985
No 40
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=2.7e-27 Score=260.17 Aligned_cols=302 Identities=9% Similarity=0.067 Sum_probs=215.8
Q ss_pred cccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceE
Q 003360 11 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 90 (826)
Q Consensus 11 ~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~l 90 (826)
.++..|++++| +|+|.+||+|..||.|++||+.++.. ..+..+ ..+..+|..+.|.. ++
T Consensus 6 ~~~~~i~~~~~-s~~~~~l~~~~~d~~v~i~~~~~~~~----------~~~~~~----~~h~~~v~~~~~~~----~~-- 64 (372)
T 1k8k_C 6 FLVEPISCHAW-NKDRTQIAICPNNHEVHIYEKSGNKW----------VQVHEL----KEHNGQVTGVDWAP----DS-- 64 (372)
T ss_dssp SCSSCCCEEEE-CTTSSEEEEECSSSEEEEEEEETTEE----------EEEEEE----ECCSSCEEEEEEET----TT--
T ss_pred ccCCCeEEEEE-CCCCCEEEEEeCCCEEEEEeCCCCcE----------Eeeeee----cCCCCcccEEEEeC----CC--
Confidence 46789999999 58999999999999999999877410 001111 12334555555543 12
Q ss_pred EEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHh
Q 003360 91 YIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 91 li~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~ 170 (826)
..+++++.+|.+.+||...-
T Consensus 65 -------------------------------------------------------~~l~~~~~dg~i~vwd~~~~----- 84 (372)
T 1k8k_C 65 -------------------------------------------------------NRIVTCGTDRNAYVWTLKGR----- 84 (372)
T ss_dssp -------------------------------------------------------TEEEEEETTSCEEEEEEETT-----
T ss_pred -------------------------------------------------------CEEEEEcCCCeEEEEECCCC-----
Confidence 23344555667777776441
Q ss_pred hccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc----eeecccccCCccee--eCCCC
Q 003360 171 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP----LLDFETKLKDGSQS--HSKVK 243 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~----~~~~~~~h~g~V~~--~s~~~ 243 (826)
.......+..|...|++++|+++++.+++++ |+.+++|+..... ...+..+|.+.|.+ |+|++
T Consensus 85 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 85 ----------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp ----------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred ----------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence 0112233467888999999999999999988 9999999655433 23334678899988 99999
Q ss_pred CEEEEEECCCcEEEEeCCCCceeee-----e---ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLI-----L---SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i-----~---~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
++|++|+.||.|++||+........ . .-..+....+..|...|++++|+|++.+|++|+.||.|++||++.+
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999999999999631110000 0 0000111223467789999999999999999999999999999844
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC--CeeEEe----------
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG--PTVLYQ---------- 383 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~--~~~l~~---------- 383 (826)
.. . ..+..+..+|++++|+|++.+|++| .||.|++||+.. ++....
T Consensus 235 ~~-----------------~----~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 292 (372)
T 1k8k_C 235 MA-----------------V----ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSS 292 (372)
T ss_dssp TE-----------------E----EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC----
T ss_pred ce-----------------e----EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccch
Confidence 32 1 2334556789999999999888887 899999999988 532110
Q ss_pred --------------------------eecccCCCCCeeEEEEeecccCCCCC---cEEEEEECCCcEEEEECCCCc
Q 003360 384 --------------------------KHIASDISSGIVSLQFETCSLQGFEK---NFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 384 --------------------------~~~~~~~~~~V~sl~f~~~~~~~~d~---~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
.....+|..+|++++|.+. ++ .+|++|+.||.|++|++.+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 293 QRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG-----GKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp ----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES-----TTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred hhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecC-----CCcceeeEEEecCCCceEEEEecChh
Confidence 1222478999999998763 45 899999999999999998654
No 41
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=3e-27 Score=262.03 Aligned_cols=244 Identities=11% Similarity=0.075 Sum_probs=181.4
Q ss_pred ccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCCceeec--ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 190 FLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVPPLLDF--ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 190 ~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~~~~~~--~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
.|...|++++|+| ++..+++++ |+.|++|+........+ ...|.+.|.+ |+|++++|++|+.||+|++||+.+.
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 195 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH 195 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC
Confidence 4677899999999 778888888 99999997765444444 2334577888 9999999999999999999999644
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR-VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~-~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.. .. +..|...|++++|+|++. +|++|+.||.|++||++..... +.. +..
T Consensus 196 ~~---~~--------~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------------~~~-----~~~ 246 (383)
T 3ei3_B 196 EI---FK--------EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-------------NSY-----IAE 246 (383)
T ss_dssp EE---EE--------EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-------------TCE-----EEE
T ss_pred EE---EE--------eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-------------cce-----EEE
Confidence 42 22 246888999999999998 9999999999999999854321 112 334
Q ss_pred eeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeec----ccCCCCCe----------eEEEEeecccCCC
Q 003360 343 MKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHI----ASDISSGI----------VSLQFETCSLQGF 407 (826)
Q Consensus 343 ~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~----~~~~~~~V----------~sl~f~~~~~~~~ 407 (826)
..|...|++++|+| ++.+|++|+.||.|++||++++..+..... ...|..++ ..+.|++
T Consensus 247 ~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~------ 320 (383)
T 3ei3_B 247 MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP------ 320 (383)
T ss_dssp EECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC------
T ss_pred ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC------
Confidence 46788999999999 999999999999999999988766532221 11223333 3344444
Q ss_pred CCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEE
Q 003360 408 EKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLL 487 (826)
Q Consensus 408 d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~ 487 (826)
++.+ +|+.|+.|++||..+++++.++..+... ..+.++ .+++++.++++
T Consensus 321 dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~-~~~~~~----------------------------~~s~~g~~l~s 369 (383)
T 3ei3_B 321 DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAA-GIISLN----------------------------KFSPTGDVLAS 369 (383)
T ss_dssp CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBC-SCCCEE----------------------------EECTTSSEEEE
T ss_pred Cccc--ccCCCCeEEEEecCCCceeeeecCCCCC-ceEEEE----------------------------EEecCccEEEE
Confidence 3444 6778999999999999998887543211 111111 23456678888
Q ss_pred eecCcEEEEecc
Q 003360 488 CSEKAACAYSLS 499 (826)
Q Consensus 488 ~se~~irv~sl~ 499 (826)
++++.|+||++.
T Consensus 370 ~sd~~i~iw~~~ 381 (383)
T 3ei3_B 370 GMGFNILIWNRE 381 (383)
T ss_dssp EETTEEEEEECC
T ss_pred ecCCcEEEEecC
Confidence 889999999986
No 42
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=3e-27 Score=283.94 Aligned_cols=292 Identities=12% Similarity=0.092 Sum_probs=213.6
Q ss_pred ccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCC
Q 003360 8 SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKA 87 (826)
Q Consensus 8 ~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~ 87 (826)
.+..|...|++++|...++.+|++|+.||+|++||+.+...... ..... ...|..+|..+.|+.
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~-------~~~~~----~~~h~~~v~~v~~s~----- 440 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG-------VAQRR----LTGHSHFVEDVVLSS----- 440 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC-------EEEEE----EECCSSCEEEEEECT-----
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc-------cccce----ecCCCCcEEEEEECC-----
Confidence 45568889999999655678999999999999999876410000 00000 011222333333321
Q ss_pred ceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHH
Q 003360 88 SRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIER 167 (826)
Q Consensus 88 g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~ 167 (826)
+...++.++.+|.|.+||...-
T Consensus 441 --------------------------------------------------------~g~~l~sgs~Dg~v~vwd~~~~-- 462 (694)
T 3dm0_A 441 --------------------------------------------------------DGQFALSGSWDGELRLWDLAAG-- 462 (694)
T ss_dssp --------------------------------------------------------TSSEEEEEETTSEEEEEETTTT--
T ss_pred --------------------------------------------------------CCCEEEEEeCCCcEEEEECCCC--
Confidence 1234556666788888987651
Q ss_pred HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec---ccccCCccee--eCC
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF---ETKLKDGSQS--HSK 241 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~---~~~h~g~V~~--~s~ 241 (826)
.....+..|...|++++|+|+++.+++++ |++|++|+......... ..+|...|.+ |+|
T Consensus 463 ---------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 463 ---------------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp ---------------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred ---------------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 12345678999999999999999999998 99999997654333222 2468888988 888
Q ss_pred CC--CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 242 VK--NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 242 ~~--~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
++ .+|++|+.||+|++||+..... .. .+..|...|++++|+|++++|++|+.||+|++||++++..
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~--~~--------~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~-- 595 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKL--RS--------TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK-- 595 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCE--EE--------EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE--
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcE--EE--------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce--
Confidence 76 6899999999999999954442 11 2346889999999999999999999999999999984422
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc-----------
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS----------- 388 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~----------- 388 (826)
+....++..|.+++|+|++.+|++++ ++.|+|||++++.++.......
T Consensus 596 --------------------~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (694)
T 3dm0_A 596 --------------------LYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSG 654 (694)
T ss_dssp --------------------EECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------
T ss_pred --------------------EEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccc
Confidence 33334567899999999998777766 5569999999998875443211
Q ss_pred -----CCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 389 -----DISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 389 -----~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
.+...+++++|+| |+.+|++|+.||+|++|++.
T Consensus 655 ~~~~~~~~~~~~~l~~sp------dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 655 PAATKRKVIYCTSLNWSA------DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ------CCCCEEEEEECT------TSSEEEEEETTSEEEEEEC-
T ss_pred cccCCceeEEeeeEEEcC------CCCEEEEEcCCCeEEEEecc
Confidence 1112478899999 69999999999999999975
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.96 E-value=9.7e-27 Score=260.80 Aligned_cols=235 Identities=15% Similarity=0.166 Sum_probs=175.4
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~ 225 (826)
.+++++.+|.+.+||... ......+..|...|++++|+|+++.+++++ |+.|++|+......
T Consensus 111 ~l~~~~~dg~i~iwd~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 173 (420)
T 3vl1_A 111 RFILGTTEGDIKVLDSNF-----------------NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173 (420)
T ss_dssp EEEEEETTSCEEEECTTS-----------------CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC
T ss_pred EEEEEECCCCEEEEeCCC-----------------cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC
Confidence 455666778888888654 112233468999999999999999999998 99999997654333
Q ss_pred eecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccc----------------cccccCCCCeE
Q 003360 226 LDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSE----------------KDFSLSGIPLT 287 (826)
Q Consensus 226 ~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~----------------~~~~~h~~~V~ 287 (826)
.....+|.+.|.+ |+|++++|++|+.||+|++||+..... +..+..... .....+...|+
T Consensus 174 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~ 251 (420)
T 3vl1_A 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN 251 (420)
T ss_dssp CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce--eEEeecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence 3323679999998 999999999999999999999954442 222221100 00112335566
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEEEec
Q 003360 288 ALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGSD 366 (826)
Q Consensus 288 ~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~lasGs~ 366 (826)
+++|+|++.+|++|+.||.|++||++.... .. .....+...|++++|+|++. +|++|+.
T Consensus 252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-----------------~~---~~~~~~~~~v~~~~~~~~~~~~l~~g~~ 311 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQ-----------------TI---QLPSKFTCSCNSLTVDGNNANYIYAGYE 311 (420)
T ss_dssp TTCSSCTTEEEEEEETTSCEEEEETTTCCE-----------------EE---EECCTTSSCEEEEEECSSCTTEEEEEET
T ss_pred ceEEcCCCCEEEEEcCCCeEEEEECCCCce-----------------eE---EcccccCCCceeEEEeCCCCCEEEEEeC
Confidence 666789999999999999999999984432 10 11223567899999999998 9999999
Q ss_pred CCeEEEEecCCCee-EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 367 QGYVYLLDTEGPTV-LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 367 dG~V~vwD~~~~~~-l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
||.|++||++++.. +.... ..+..+|.++.|.+ +.+|++++.|++|++|++.++
T Consensus 312 dg~i~vwd~~~~~~~~~~~~--~~~~~~v~~~~~~~-------~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 312 NGMLAQWDLRSPECPVGEFL--INEGTPINNVYFAA-------GALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TSEEEEEETTCTTSCSEEEE--ESTTSCEEEEEEET-------TEEEEEETTTEEEEEEEECCT
T ss_pred CCeEEEEEcCCCcCchhhhh--ccCCCCceEEEeCC-------CCEEEEecCCccEEEEeccCC
Confidence 99999999998754 32232 24677888886653 789999999999999998864
No 44
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=1e-27 Score=265.17 Aligned_cols=205 Identities=8% Similarity=0.038 Sum_probs=158.9
Q ss_pred ccCCCEEEEEEeeCCCeEEEe--c-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCc
Q 003360 190 FLDSSITAMKLITGNSFILSS--A-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPL 264 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~--~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~ 264 (826)
.++..+.+++|+|||++++++ + |++|++|+......... ..|.+.|.+ |+|++++|++++.|+.+.+|+.++..
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~-~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~ 209 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE-IETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC 209 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE-EECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE-eCCCCceEEEEEccCCceEEeccceeEEEEEeccCcc
Confidence 455679999999999998754 3 78999998765433322 457888988 99999999999866554444445554
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC----cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG----MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg----~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
... . ....|...|++++|+|++..+++++.|+ .+++|++..... ......
T Consensus 210 ~~~---~------~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~-----------------~~~~~~ 263 (365)
T 4h5i_A 210 IAR---K------TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT-----------------SVLRSK 263 (365)
T ss_dssp EEE---E------CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE-----------------EEEEEE
T ss_pred eee---e------ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee-----------------cceeee
Confidence 211 1 1135778899999999999999999887 678888763211 000012
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
....+..+|++++|+|+|++||+|+.||+|+|||+.+++++.. ...+|..+|++++|+| |+.+|++|+.|++
T Consensus 264 ~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~--~~~gH~~~V~~v~fSp------dg~~laS~S~D~t 335 (365)
T 4h5i_A 264 QVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI--FKQAHSFAITEVTISP------DSTYVASVSAANT 335 (365)
T ss_dssp EEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE--ETTSSSSCEEEEEECT------TSCEEEEEETTSE
T ss_pred eecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE--ecCcccCCEEEEEECC------CCCEEEEEeCCCe
Confidence 3445677899999999999999999999999999999998844 3468999999999999 7999999999999
Q ss_pred EEEEECCCC
Q 003360 421 VLVLDSDNG 429 (826)
Q Consensus 421 V~iwd~~tg 429 (826)
|+|||+..+
T Consensus 336 vrvw~ip~~ 344 (365)
T 4h5i_A 336 IHIIKLPLN 344 (365)
T ss_dssp EEEEECCTT
T ss_pred EEEEEcCCC
Confidence 999998643
No 45
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=8.4e-27 Score=249.82 Aligned_cols=208 Identities=10% Similarity=0.087 Sum_probs=160.2
Q ss_pred ecccCCCEEEEEEeeC--CCeEEEec-CCcEEEeccCCCc---eeecccccCCccee--eCCC--CCEEEEEECCCcEEE
Q 003360 188 MPFLDSSITAMKLITG--NSFILSSA-DEDYSLLAKSVPP---LLDFETKLKDGSQS--HSKV--KNLFITGHSDGAINF 257 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~--~~~l~~~~-d~~i~~w~~~~~~---~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~DGtVri 257 (826)
+..|..+|++++|+++ +..+++++ |++|++|+..... ...+ ..|...|.+ |+|+ +.+|++|+.||+|++
T Consensus 49 l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~ 127 (297)
T 2pm7_B 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127 (297)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEE
Confidence 3578889999999864 88999988 9999999765432 2222 568999988 9987 889999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-------------CCEEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-------------SRVLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-------------~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
||+....... ...+..|...|++++|+|+ +++|++|+.|++|+|||++.+....
T Consensus 128 wd~~~~~~~~--------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~----- 194 (297)
T 2pm7_B 128 VEFKENGTTS--------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----- 194 (297)
T ss_dssp EEBCSSSCBC--------CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE-----
T ss_pred EEecCCCcee--------eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE-----
Confidence 9994332100 1123468889999999997 5799999999999999998432100
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC---CEEEEEecCCeEEEEecCCCee--EEeeecccCCCCCeeEEEE
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS---QHLAVGSDQGYVYLLDTEGPTV--LYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g---~~lasGs~dG~V~vwD~~~~~~--l~~~~~~~~~~~~V~sl~f 399 (826)
... ..+..|...|++++|+|++ .+||+|+.||+|+|||++.... .........|...|.+++|
T Consensus 195 ---------~~~---~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 262 (297)
T 2pm7_B 195 ---------VLE---STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 262 (297)
T ss_dssp ---------EEE---EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE
T ss_pred ---------EEE---EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEE
Confidence 010 2344578889999999984 7999999999999999987531 1111111467789999999
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+| ++.+|++++.|++|++|+..
T Consensus 263 s~------~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 263 SL------SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CS------SSCCEEEEETTSCEEEEEEC
T ss_pred CC------CCCEEEEEcCCCcEEEEEEC
Confidence 99 59999999999999999976
No 46
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=1.1e-26 Score=258.08 Aligned_cols=320 Identities=13% Similarity=0.162 Sum_probs=215.7
Q ss_pred cccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCC
Q 003360 7 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 86 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~ 86 (826)
..+..|...|++++| +| .+||+|+.||.|++||+.++..... ...+..+ ..+..+|..+.|......
T Consensus 10 ~~~~~h~~~i~~~~~-~~--~~l~s~~~dg~i~iw~~~~~~~~~~------~~~~~~~----~~h~~~v~~~~~~~~~~~ 76 (397)
T 1sq9_A 10 NAGKAHDADIFSVSA-CN--SFTVSCSGDGYLKVWDNKLLDNENP------KDKSYSH----FVHKSGLHHVDVLQAIER 76 (397)
T ss_dssp EESSCSSSCEEEEEE-CS--SEEEEEETTSEEEEEESBCCTTCCG------GGGEEEE----ECCTTCEEEEEEEEEEET
T ss_pred hhhhhhhcCeEEEEe-cC--CeEEEEcCCCEEEEEECCCcccccC------CCcceEE----ecCCCcEEEEEEeccccc
Confidence 445567889999999 44 8999999999999999988621110 0011111 134557777777652111
Q ss_pred Cc---eEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 87 AS---RLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 87 ~g---~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
++ .++ +.++.+|.|.+||..
T Consensus 77 ~g~~~~~l---------------------------------------------------------~s~~~dg~i~iw~~~ 99 (397)
T 1sq9_A 77 DAFELCLV---------------------------------------------------------ATTSFSGDLLFYRIT 99 (397)
T ss_dssp TTEEEEEE---------------------------------------------------------EEEETTSCEEEEEEE
T ss_pred CCccccEE---------------------------------------------------------EEEcCCCCEEEEEcc
Confidence 12 333 334445666677655
Q ss_pred hHHHHHhhccCCCCCCCCccceeeeccc-----CCCEEEEEEe----eCCCe-EEEec-CCcEEEeccCC------C-ce
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFL-----DSSITAMKLI----TGNSF-ILSSA-DEDYSLLAKSV------P-PL 225 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h-----~~~Vt~~~fs----~~~~~-l~~~~-d~~i~~w~~~~------~-~~ 225 (826)
.-. . ........+..| ...|++++|+ ++++. +++++ |+.|++|+... . ..
T Consensus 100 ~~~-----~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 100 RED-----E-------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ECT-----T-------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred CCc-----c-------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 410 0 011113345566 5899999999 99999 99988 99999996544 2 22
Q ss_pred e-----ecc------cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccC---CCCeEEE
Q 003360 226 L-----DFE------TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLS---GIPLTAL 289 (826)
Q Consensus 226 ~-----~~~------~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h---~~~V~~l 289 (826)
. .+. ..|...|.+ |+|++ ++++|+.||.|++||+..... +..+.. ...| ...|+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~--~~~~~~-----~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP--LYNFES-----QHSMINNSNSIRSV 239 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE--EEEEEC-----CC---CCCCCEEEE
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce--eEEEec-----cccccccCCccceE
Confidence 2 221 347788888 99999 999999999999999954442 222221 0126 7899999
Q ss_pred EEeCCCCEEEEEeCC---CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec
Q 003360 290 YYDGTSRVLVSGDQS---GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD 366 (826)
Q Consensus 290 ~fsp~~~~Lasgs~d---g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~ 366 (826)
+|+|++.+|++|+.| |.|++||++..... ..+.......... +....|...|++++|+|++.+|++|+.
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERI-----GSLSVPTHSSQAS---LGEFAHSSWVMSLSFNDSGETLCSAGW 311 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEE-----EEECBC-----------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCccc-----ceeccCccccccc---ccccccCCcEEEEEECCCCCEEEEEeC
Confidence 999999999999999 99999999854321 0000000000000 011116788999999999999999999
Q ss_pred CCeEEEEecCCCeeEEeeeccc---CC---------------CCCeeEEEEeecccCCCCC----------cEEEEEECC
Q 003360 367 QGYVYLLDTEGPTVLYQKHIAS---DI---------------SSGIVSLQFETCSLQGFEK----------NFLVIATKD 418 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~---~~---------------~~~V~sl~f~~~~~~~~d~----------~~l~sgs~D 418 (826)
||.|+|||+++++++....... .| ..+|.+++|++ ++ .+|++++.|
T Consensus 312 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~------~g~~~~~~~~~~~~l~s~~~d 385 (397)
T 1sq9_A 312 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK------KGWRSGMGADLNESLCCVCLD 385 (397)
T ss_dssp TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC------TTTSBSTTCTTSCEEEEEETT
T ss_pred CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc------ccccccccccccceEEEecCC
Confidence 9999999999999886654110 34 88999999999 35 799999999
Q ss_pred CcEEEEECCCCc
Q 003360 419 SSVLVLDSDNGN 430 (826)
Q Consensus 419 g~V~iwd~~tg~ 430 (826)
|.|++|++.+|+
T Consensus 386 g~i~iw~~~~g~ 397 (397)
T 1sq9_A 386 RSIRWFREAGGK 397 (397)
T ss_dssp TEEEEEEEEC--
T ss_pred CcEEEEEcCCCC
Confidence 999999998764
No 47
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=5.6e-27 Score=256.46 Aligned_cols=313 Identities=12% Similarity=0.162 Sum_probs=218.6
Q ss_pred cccccceEEEecCC----CCCEEEEEEecCcEEEEeCCCcccccccccccccccccccc-CCCCCCcCCeEEEEEeeeCC
Q 003360 11 HETKQVTSACWACP----IGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLN-LGYKLDKIPISSLKWVYADG 85 (826)
Q Consensus 11 ~~~~~i~slcW~~p----~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pI~~l~W~~~~~ 85 (826)
.|...|++++|+ | ....++++..+|.|++||+.++..... +. .....+..+|..+.|+....
T Consensus 16 ~h~~~v~~i~~~-p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 16 DHNQPLFGVQFN-WHSKEGDPLVFATVGSNRVTLYECHSQGEIRL------------LQSYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp TTCSCEEEEEEC-TTCCTTSCEEEEEEETTEEEEEEECGGGCEEE------------EEEEECSCTTCCEEEEEEEECTT
T ss_pred CCCCceEEEEEe-cccCCCCceEEEECCCCEEEEEEcCCCcEEEe------------eeeccccCCCCcEEEEEeccCCC
Confidence 468899999995 4 356788888889999999987521111 11 11122445677777766332
Q ss_pred CCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhH
Q 003360 86 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 165 (826)
Q Consensus 86 ~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i 165 (826)
.++.+ +++++.+|.|.+||....
T Consensus 83 ~~~~~---------------------------------------------------------l~~~~~dg~i~v~d~~~~ 105 (366)
T 3k26_A 83 TSHPL---------------------------------------------------------LAVAGSRGIIRIINPITM 105 (366)
T ss_dssp TCCEE---------------------------------------------------------EEEEETTCEEEEECTTTC
T ss_pred CCCCE---------------------------------------------------------EEEecCCCEEEEEEchhc
Confidence 22333 344445567777876541
Q ss_pred HHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCCceeecc---cccCCccee--
Q 003360 166 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVPPLLDFE---TKLKDGSQS-- 238 (826)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~~~~~~~---~~h~g~V~~-- 238 (826)
.....+..|...|++++|+| ++..+++++ |+.|++|+.......... .+|.+.|.+
T Consensus 106 -----------------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 106 -----------------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp -----------------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred -----------------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 12334678999999999999 899999988 999999987654433332 578999998
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccc--------------------ccccccccCCCCeEEEEEeCCCCEE
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQ--------------------QSEKDFSLSGIPLTALYYDGTSRVL 298 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~--------------------~~~~~~~~h~~~V~~l~fsp~~~~L 298 (826)
|+|++++|++|+.||+|++||+..... +..+.. ........|...|++++|+ +.+|
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 244 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSKRM--MNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI 244 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSHHH--HHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred ECCCCCEEEEecCCCCEEEEECCCCcc--ccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence 999999999999999999999954331 011110 0001122378899999999 6799
Q ss_pred EEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC--CCEEEEEecCCeEEEEecC
Q 003360 299 VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN--SQHLAVGSDQGYVYLLDTE 376 (826)
Q Consensus 299 asgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~--g~~lasGs~dG~V~vwD~~ 376 (826)
++++.||.|++||++........ +.......... ..+..+...|++++|+|+ +.+|++|+.||.|++||+.
T Consensus 245 ~~~~~d~~i~~wd~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 245 LSKSCENAIVCWKPGKMEDDIDK----IKPSESNVTIL---GRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp EEECSSSEEEEEEESSTTCCGGG----CCTTCCCEEEE---EEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred EEEecCCEEEEEeCCCccccccc----cccCCcchhee---ccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 99999999999999865431100 00000110111 334456778999999999 9999999999999999999
Q ss_pred CCeeEE-eeecccCC--CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 377 GPTVLY-QKHIASDI--SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 377 ~~~~l~-~~~~~~~~--~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+++... .......| ..+|++++|++ ++.+|++++.||.|++||+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 318 VEDPHKAKCTTLTHHKCGAAIRQTSFSR------DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSSGGGCEEEEECCTTCCSCEEEEEECT------TSSEEEEEETTSEEEEEEC-
T ss_pred CCCCccccceEEcccccCCceEEEEeCC------CCCeEEEEeCCCEEEEEEec
Confidence 875321 01111234 78999999999 69999999999999999985
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=3.8e-26 Score=254.98 Aligned_cols=286 Identities=17% Similarity=0.169 Sum_probs=202.4
Q ss_pred ccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeeccccc------------------CCccee--eCCCCCEEEEE
Q 003360 190 FLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKL------------------KDGSQS--HSKVKNLFITG 249 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h------------------~g~V~~--~s~~~~~l~Tg 249 (826)
.|...|++++|+|+++++++++++.+++|+............| ...|.+ |+|++++|++|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 5899999999999999999988999999975443322211111 223666 99999999999
Q ss_pred ECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeec
Q 003360 250 HSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS 329 (826)
Q Consensus 250 s~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s 329 (826)
+.||+|+|||+..... +.. +..|...|++++|+|++..|++|+.|++|++||++++..
T Consensus 142 ~~d~~i~iwd~~~~~~--~~~--------~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~------------ 199 (393)
T 1erj_A 142 AEDRLIRIWDIENRKI--VMI--------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC------------ 199 (393)
T ss_dssp ETTSCEEEEETTTTEE--EEE--------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE------------
T ss_pred cCCCeEEEEECCCCcE--EEE--------EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee------------
Confidence 9999999999955442 122 346889999999999999999999999999999984432
Q ss_pred CCCCeEEEEEEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeec----ccCCCCCeeEEEEeeccc
Q 003360 330 KKGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHI----ASDISSGIVSLQFETCSL 404 (826)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~----~~~~~~~V~sl~f~~~~~ 404 (826)
.....+...|++++|+| ++.+|++|+.||.|++||++++.++..... ..+|...|.+++|++
T Consensus 200 ----------~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~--- 266 (393)
T 1erj_A 200 ----------SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR--- 266 (393)
T ss_dssp ----------EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT---
T ss_pred ----------EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC---
Confidence 23334567899999999 899999999999999999999887754421 146888999999999
Q ss_pred CCCCCcEEEEEECCCcEEEEECCCCceEE------------eeeccCCCCCcceEEEEecCCCCcccCccccccccccCC
Q 003360 405 QGFEKNFLVIATKDSSVLVLDSDNGNMLS------------TNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKG 472 (826)
Q Consensus 405 ~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~------------~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~ 472 (826)
++.+|++|+.|++|++||+.++.... ++..|. ..+.++
T Consensus 267 ---~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~------------------------ 316 (393)
T 1erj_A 267 ---DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK---DFVLSV------------------------ 316 (393)
T ss_dssp ---TSSEEEEEETTSEEEEEEC---------------CEEEEEECCS---SCEEEE------------------------
T ss_pred ---CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc---CcEEEE------------------------
Confidence 69999999999999999998654322 211111 111111
Q ss_pred CCCCCCCCCCCEEEEee-cCcEEEEeccccccccceeeeeeecCCCCceeeEeeee-----CCceEEEEEEeeceEEEec
Q 003360 473 SPKENAVPKQWFVLLCS-EKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS-----GSDVGLMLLFTSGKFEIRS 546 (826)
Q Consensus 473 ~~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~-----~~~~~lv~~~~~G~I~i~s 546 (826)
.+.+++.+++.++ |+.|++|++.. .+.+.....+... +....+.. +.+..++....||.|++|.
T Consensus 317 ----~~~~~~~~l~sgs~D~~v~iwd~~~-----~~~~~~l~~h~~~-v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 317 ----ATTQNDEYILSGSKDRGVLFWDKKS-----GNPLLMLQGHRNS-VISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp ----EECGGGCEEEEEETTSEEEEEETTT-----CCEEEEEECCSSC-EEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred ----EECCCCCEEEEEeCCCeEEEEECCC-----CeEEEEECCCCCC-EEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 2334555666665 45899999873 2333333322111 11111111 3467788888999999998
Q ss_pred cCCc
Q 003360 547 LPEL 550 (826)
Q Consensus 547 lP~L 550 (826)
+...
T Consensus 387 ~~~~ 390 (393)
T 1erj_A 387 YKKI 390 (393)
T ss_dssp EEEC
T ss_pred cccc
Confidence 7543
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-27 Score=264.76 Aligned_cols=343 Identities=9% Similarity=0.082 Sum_probs=239.3
Q ss_pred ccccceEEEecCCCCC-EEEEE----------EecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEE
Q 003360 12 ETKQVTSACWACPIGS-KVAVG----------YSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKW 80 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~-~latg----------~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W 80 (826)
+..+|.+++| +|+|. +||+| +.||.|++||+.++... .++. ...+..+|..+.|
T Consensus 11 ~~~~v~~~~~-sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~---------~~~~-----~~~~~~~v~~~~~ 75 (416)
T 2pm9_A 11 EFSRTATFAW-SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE---------KPIA-----SLQVDSKFNDLDW 75 (416)
T ss_dssp EEEESCBCCB-CSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC---------SCSC-----CCCCSSCEEEEEE
T ss_pred hhhhcceEee-CCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC---------cEEE-----EEecCCceEEEEE
Confidence 3458999999 57987 99999 89999999999886211 0111 1124567999999
Q ss_pred eeeCCCCceEEEEccCCcCccceeEEEEcccCCcc-eeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEE
Q 003360 81 VYADGKASRLYIMGASDFVSMNLLQIVLLNEQTES-RTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYA 159 (826)
Q Consensus 81 ~~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~-~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~ 159 (826)
.. ++.++++|+.+ ..+.++.+...... +.........+.+..+.+.+. ....++.++.+|.+.+
T Consensus 76 s~----~~~~l~~~~~d----g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-------~~~~l~s~~~dg~v~i 140 (416)
T 2pm9_A 76 SH----NNKIIAGALDN----GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-------QDNVLASGGNNGEIFI 140 (416)
T ss_dssp CS----SSSCEEEEESS----SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-------STTBEEEECSSSCEEB
T ss_pred CC----CCCeEEEEccC----CeEEEeecccccccccchhhccCCccceEEEEEcCC-------CCCEEEEEcCCCeEEE
Confidence 65 45566666653 34666666542211 122111123344555544432 1356788889999999
Q ss_pred ecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeC-CCeEEEec-CCcEEEeccCCCceeeccccc-----
Q 003360 160 FDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITG-NSFILSSA-DEDYSLLAKSVPPLLDFETKL----- 232 (826)
Q Consensus 160 ~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h----- 232 (826)
||...... .. .............|...|++++|+++ +..+++++ |+.|++|+............|
T Consensus 141 wd~~~~~~-------~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 212 (416)
T 2pm9_A 141 WDMNKCTE-------SP-SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSG 212 (416)
T ss_dssp CBTTTTSS-------CT-TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSC
T ss_pred EECCCCcc-------cc-ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccc
Confidence 99876210 00 00000011123578899999999999 67888888 999999976553332221222
Q ss_pred -CCccee--eCCCC-CEEEEEECCC---cEEEEeCCCC-ceeeeeecccccccccc-cCCCCeEEEEEeC-CCCEEEEEe
Q 003360 233 -KDGSQS--HSKVK-NLFITGHSDG---AINFWDVSCP-LFLLILSLKQQSEKDFS-LSGIPLTALYYDG-TSRVLVSGD 302 (826)
Q Consensus 233 -~g~V~~--~s~~~-~~l~Tgs~DG---tVriWD~s~~-~~~~i~~l~~~~~~~~~-~h~~~V~~l~fsp-~~~~Lasgs 302 (826)
...|.+ |+|++ .++++|+.|| .|++||+... .. ...+. .|...|++++|+| ++.+|++|+
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 282 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP----------LQTLNQGHQKGILSLDWCHQDEHLLLSSG 282 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC----------SBCCCSCCSSCEEEEEECSSCSSCEEEEE
T ss_pred cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC----------cEEeecCccCceeEEEeCCCCCCeEEEEe
Confidence 677887 99997 6999999999 9999999443 21 11234 6788999999999 899999999
Q ss_pred CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeE
Q 003360 303 QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l 381 (826)
.||.|++||++++.. . ..+..|...|++++|+|++ .+|++|+.||.|++||+......
T Consensus 283 ~dg~v~~wd~~~~~~-----------------~----~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 283 RDNTVLLWNPESAEQ-----------------L----SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp SSSEEEEECSSSCCE-----------------E----EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred CCCCEEEeeCCCCcc-----------------c----eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 999999999984432 1 3344567889999999999 89999999999999999876532
Q ss_pred Eee--------------------------------ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 382 YQK--------------------------------HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 382 ~~~--------------------------------~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
... .....+..++.+++|++ |+.+|++++.|++|+||++.+.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF------GGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET------TTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee------CCeEEEEeCCCCeEEEEEeccC
Confidence 110 00011567788899999 6999999999999999999864
No 50
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.6e-26 Score=250.03 Aligned_cols=286 Identities=9% Similarity=0.067 Sum_probs=217.9
Q ss_pred cccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCc
Q 003360 9 VYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKAS 88 (826)
Q Consensus 9 ~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g 88 (826)
+..|...|++++| +|+|++||+|+.||.|++||+.++.... .+ ..+..+|..+.|.. ++
T Consensus 28 l~~h~~~v~~~~~-s~~~~~l~~~~~dg~i~vwd~~~~~~~~------------~~----~~h~~~v~~~~~~~----~~ 86 (369)
T 3zwl_B 28 LTGHERPLTQVKY-NKEGDLLFSCSKDSSASVWYSLNGERLG------------TL----DGHTGTIWSIDVDC----FT 86 (369)
T ss_dssp EECCSSCEEEEEE-CTTSCEEEEEESSSCEEEEETTTCCEEE------------EE----CCCSSCEEEEEECT----TS
T ss_pred EEEeeceEEEEEE-cCCCCEEEEEeCCCEEEEEeCCCchhhh------------hh----hhcCCcEEEEEEcC----CC
Confidence 4557889999999 5799999999999999999988752111 11 12333555555532 11
Q ss_pred eEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHH
Q 003360 89 RLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERY 168 (826)
Q Consensus 89 ~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~ 168 (826)
..+++++.+|.+.+||...-
T Consensus 87 ---------------------------------------------------------~~l~s~~~dg~i~iwd~~~~--- 106 (369)
T 3zwl_B 87 ---------------------------------------------------------KYCVTGSADYSIKLWDVSNG--- 106 (369)
T ss_dssp ---------------------------------------------------------SEEEEEETTTEEEEEETTTC---
T ss_pred ---------------------------------------------------------CEEEEEeCCCeEEEEECCCC---
Confidence 23445556677888887551
Q ss_pred HhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-C-----CcEEEeccCCCc------------eeeccc
Q 003360 169 LLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-D-----EDYSLLAKSVPP------------LLDFET 230 (826)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d-----~~i~~w~~~~~~------------~~~~~~ 230 (826)
. ....+. |...|++++|+|++..+++++ + +.+.+|+..... ... ..
T Consensus 107 -------------~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~-~~ 170 (369)
T 3zwl_B 107 -------------Q-CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHK-II 170 (369)
T ss_dssp -------------C-EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEE-EE
T ss_pred -------------c-EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeee-cc
Confidence 0 112223 778899999999999999988 7 899999543221 111 13
Q ss_pred ccCC--ccee--eCCCCCEEEEEECCCcEEEEeCCC-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC
Q 003360 231 KLKD--GSQS--HSKVKNLFITGHSDGAINFWDVSC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG 305 (826)
Q Consensus 231 ~h~g--~V~~--~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg 305 (826)
.|.+ .+.+ |+|++++|++|+.||.|++||+.. ... +.. +..|...|++++|+|++.+|++++.||
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~d~ 240 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY--VDS--------IDLHEKSISDMQFSPDLTYFITSSRDT 240 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEE--EEE--------EECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe--EEE--------EecCCCceeEEEECCCCCEEEEecCCc
Confidence 3554 6766 999999999999999999999954 331 122 245778999999999999999999999
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCC--------------eEE
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG--------------YVY 371 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG--------------~V~ 371 (826)
.|++||+++... +....+...+.+++|+|++.++++|+.++ .|+
T Consensus 241 ~i~v~d~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 241 NSFLVDVSTLQV----------------------LKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp EEEEEETTTCCE----------------------EEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred eEEEEECCCCce----------------------eeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence 999999984432 33344678899999999999999999998 899
Q ss_pred EEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 372 LLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 372 vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
+||+.+++.+.... +|...|++++|+| ++.+|++++.||.|++|+..++...
T Consensus 299 ~~d~~~~~~~~~~~---~~~~~v~~~~~s~------~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 299 FYHKIFEEEIGRVQ---GHFGPLNTVAISP------QGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp EEETTTCCEEEEEE---CCSSCEEEEEECT------TSSEEEEEETTSEEEEEEECHHHHT
T ss_pred EEecCCCcchhhee---cccCcEEEEEECC------CCCEEEEEcCCCeEEEEECccccch
Confidence 99999998885553 7888999999999 6999999999999999999866543
No 51
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=5.2e-26 Score=248.81 Aligned_cols=286 Identities=13% Similarity=0.093 Sum_probs=206.6
Q ss_pred eeeecccCCCEEEEEE-----ee-CCCeEEEec-CCcEEEeccCCCc-------eeecccccCCccee--eCCCCCEEEE
Q 003360 185 MLKMPFLDSSITAMKL-----IT-GNSFILSSA-DEDYSLLAKSVPP-------LLDFETKLKDGSQS--HSKVKNLFIT 248 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~f-----s~-~~~~l~~~~-d~~i~~w~~~~~~-------~~~~~~~h~g~V~~--~s~~~~~l~T 248 (826)
...+.+|...|++++| ++ +++.+++|+ |++|++|+..... ......+|.+.|.+ |+|++.++++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 3457899999999999 66 899999999 9999999754211 11123679999998 9999999999
Q ss_pred EECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEee
Q 003360 249 GHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 249 gs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
|+.||+|++||+..... +. .+..|...|++++|+|++++|++|+.||+|++||+.....
T Consensus 94 ~s~D~~v~lwd~~~~~~--~~--------~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~----------- 152 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTT--YK--------RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK----------- 152 (343)
T ss_dssp EETTSEEEEEETTSSCE--EE--------EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-----------
T ss_pred EcCCCcEEEEECCCCcE--EE--------EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-----------
Confidence 99999999999944432 12 2346889999999999999999999999999999872210
Q ss_pred cCCCCeEEEEEEEE---eeccCCeEEEEEccCC----------CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCee
Q 003360 329 SKKGNSHIIHSVKV---MKINGSIISLNMNRNS----------QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIV 395 (826)
Q Consensus 329 s~~~~~~~~~~~~~---~~~~~~V~~l~~s~~g----------~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~ 395 (826)
... ..|...|.+++|+|++ .++++|+.||+|++||. ...+.... ..|...|.
T Consensus 153 -----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~---~~h~~~v~ 217 (343)
T 2xzm_R 153 -----------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTF---KAHESNVN 217 (343)
T ss_dssp -----------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEE---ECCSSCEE
T ss_pred -----------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEE---cCccccce
Confidence 111 1346679999999987 78999999999999995 45555433 37888999
Q ss_pred EEEEeecccCCCCCcEEEEEECCCcEEEEECCC-CceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCC
Q 003360 396 SLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN-GNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSP 474 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t-g~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~ 474 (826)
+++|+| ++.+|++|+.|++|++||+.+ +.....+. + ...+.++.
T Consensus 218 ~~~~s~------~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~---~~~v~~v~------------------------- 262 (343)
T 2xzm_R 218 HLSISP------NGKYIATGGKDKKLLIWDILNLTYPQREFD-A---GSTINQIA------------------------- 262 (343)
T ss_dssp EEEECT------TSSEEEEEETTCEEEEEESSCCSSCSEEEE-C---SSCEEEEE-------------------------
T ss_pred EEEECC------CCCEEEEEcCCCeEEEEECCCCcccceeec-C---CCcEEEEE-------------------------
Confidence 999999 699999999999999999953 33333321 1 11122222
Q ss_pred CCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeee-----------cCCCCceeeEeeeeCCceEEEEEEeeceEE
Q 003360 475 KENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKK-----------FHSSSCCWASTFYSGSDVGLMLLFTSGKFE 543 (826)
Q Consensus 475 ~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~-----------~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~ 543 (826)
+++++.++.+++++.+++|++.... ...+.... .. ..-+. .+.-++.+..|+....+|.|+
T Consensus 263 ---~sp~~~~la~~~d~~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~v~-~~~~sp~g~~l~sg~~Dg~v~ 334 (343)
T 2xzm_R 263 ---FNPKLQWVAVGTDQGVKIFNLMTQS---KAPVCTIEAEPITKAEGQKGK-NPQCT-SLAWNALGKKLFAGFTDGVIR 334 (343)
T ss_dssp ---ECSSSCEEEEEESSCEEEEESSSCC---SCSEEECCCCSGGGBTTBCCS-CCCEE-EEEECSSSCCEEEEETTSEEE
T ss_pred ---ECCCCCEEEEECCCCEEEEEeCCCC---CCceEEeecCcchhhhhhcCC-CCceE-EEEECCCCCeEEEecCCceEE
Confidence 3455678888889999999986321 00000110 01 11111 111126678889999999999
Q ss_pred EeccCC
Q 003360 544 IRSLPE 549 (826)
Q Consensus 544 i~slP~ 549 (826)
++.+..
T Consensus 335 ~w~~~~ 340 (343)
T 2xzm_R 335 TFSFET 340 (343)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 998653
No 52
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.6e-26 Score=245.85 Aligned_cols=302 Identities=12% Similarity=0.064 Sum_probs=198.4
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc---eeecccc-cCCccee--eCCCCCEEEEEECCCcEEE
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP---LLDFETK-LKDGSQS--HSKVKNLFITGHSDGAINF 257 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~---~~~~~~~-h~g~V~~--~s~~~~~l~Tgs~DGtVri 257 (826)
...+..|...|++++|+++ .+++++ |+.|++|+..... ...+..+ |.+.|.+ |+|++++|++|+.||+|+|
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 4457899999999999987 888888 9999999765421 2223233 9999998 9999999999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
||........ ...+....+..|...|++++|+|++++|++|+.|++|++||++.... . ....
T Consensus 85 w~~~~~~~~~---~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~-------------~-~~~~- 146 (330)
T 2hes_X 85 WAKEESADRT---FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE-------------E-YECI- 146 (330)
T ss_dssp EEC----------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC-------------C-CEEE-
T ss_pred EEcccCcCcc---ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC-------------C-eEEE-
Confidence 9984221000 00000122357889999999999999999999999999999953211 0 0111
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC--eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP--TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~--~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
..+..|...|++++|+|++.+|++|+.||+|++||...+ .++.. ..+|...|.++.|+|. .++.+|++|
T Consensus 147 --~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~---~~~h~~~v~~~~~~~~----~~~~~l~s~ 217 (330)
T 2hes_X 147 --SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV---LNGHEGTVWSSDFDKT----EGVFRLCSG 217 (330)
T ss_dssp --EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCS----SSSCEEEEE
T ss_pred --EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE---ccCCCCcEEEEEecCC----CCeeEEEEE
Confidence 234457788999999999999999999999999999876 44433 3578999999999982 015689999
Q ss_pred ECCCcEEEEECCCCc--------eEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEE
Q 003360 416 TKDSSVLVLDSDNGN--------MLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLL 487 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~--------~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~ 487 (826)
+.|++|++||+.++. +...+.. .....+.++.+ .+.+.++..
T Consensus 218 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~----------------------------s~~~~l~s~ 267 (330)
T 2hes_X 218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPD--VHKRQVYNVAW----------------------------GFNGLIASV 267 (330)
T ss_dssp ETTSCEEEEEEEEECTTSCEEEEEEEECCS--CCSSCEEEEEE----------------------------CTTSCEEEE
T ss_pred eCCCeEEEEEecCCCccccceeEEeeeccc--ccccceEEEEE----------------------------cCCCEEEEE
Confidence 999999999987542 2222111 11122333322 223346666
Q ss_pred eecCcEEEEeccccccccceeeeee-ecCCCCceeeEeeee-CCceEEEEEEeeceEEEeccC
Q 003360 488 CSEKAACAYSLSHAVQGVKKVLYKK-KFHSSSCCWASTFYS-GSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 488 ~se~~irv~sl~~~~~g~~k~~~k~-~~~~~~c~~~~~~~~-~~~~~lv~~~~~G~I~i~slP 548 (826)
+.|+.|+||++.. +..+.+... ..+....+....+.. ..+..|+....||.|+++.+.
T Consensus 268 ~~dg~v~iw~~~~---~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 268 GADGVLAVYEEVD---GEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp ETTSCEEEEEEET---TEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred eCCCEEEEEEcCC---CceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 6677999999852 111122111 111110111111111 145668888899999999864
No 53
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=4.7e-27 Score=261.12 Aligned_cols=305 Identities=11% Similarity=0.049 Sum_probs=217.2
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
...+..|...|++++|+|+++++++|+ |++|++|+............|...|.+ |+|++++|++|+.|++|++||+.
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~ 138 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS 138 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence 355789999999999999999999999 999999986554433333678888888 99999999999999999999994
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
.... ..-.......+.+|...|.++.|+|++ ..|++|+.|++|++||++++.... .+ .. .
T Consensus 139 ~~~~---~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~-----~~--~~---------~ 199 (380)
T 3iz6_a 139 SQAD---RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS-----IF--GS---------E 199 (380)
T ss_dssp CCSS---CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE-----EE--CC---------C
T ss_pred CCcc---ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEE-----Ee--ec---------c
Confidence 3220 000011122346788999999999974 579999999999999998553310 00 00 0
Q ss_pred EEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCC-CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 341 KVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEG-PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
....|...|.+++|++ ++.+|++|+.||+|++||++. ...+... .+|...|.+++|+| ++.+|++|+.|
T Consensus 200 ~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~---~~h~~~v~~v~~~p------~~~~l~s~s~D 270 (380)
T 3iz6_a 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY---HGHEGDINSVKFFP------DGQRFGTGSDD 270 (380)
T ss_dssp SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE---CCCSSCCCEEEECT------TSSEEEEECSS
T ss_pred cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE---CCcCCCeEEEEEec------CCCeEEEEcCC
Confidence 0023567899999977 889999999999999999984 3444333 47899999999999 69999999999
Q ss_pred CcEEEEECCCCceEEeeeccCCCCC----cceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe-ecCcE
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPKKPS----RALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC-SEKAA 493 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~~~~----~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-se~~i 493 (826)
++|++||+++++.+..+..+..... .+.++ .+++++.+++++ .++.|
T Consensus 271 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~----------------------------~~s~~g~~l~~g~~dg~i 322 (380)
T 3iz6_a 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV----------------------------AFSISGRLLFAGYSNGDC 322 (380)
T ss_dssp SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE----------------------------EECSSSSEEEEECTTSCE
T ss_pred CeEEEEECCCCcEEEEecccccccccccCceEEE----------------------------EECCCCCEEEEEECCCCE
Confidence 9999999999998877644332111 01111 244555666665 45689
Q ss_pred EEEeccccccccceeeeee----ecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccc
Q 003360 494 CAYSLSHAVQGVKKVLYKK----KFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSL 552 (826)
Q Consensus 494 rv~sl~~~~~g~~k~~~k~----~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~ 552 (826)
+||++.. .+.+... ..+ ...+. .+..++.+..|+....||.|++|.+..-+.
T Consensus 323 ~vwd~~~-----~~~~~~~~~~~~~h-~~~v~-~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 323 YVWDTLL-----AEMVLNLGTLQNSH-EGRIS-CLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp EEEETTT-----CCEEEEECCSCSSC-CCCCC-EEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred EEEECCC-----CceEEEEecccCCC-CCceE-EEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 9999862 2222221 111 11111 111126677888899999999999876543
No 54
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=5.2e-27 Score=265.59 Aligned_cols=218 Identities=15% Similarity=0.129 Sum_probs=172.9
Q ss_pred eecccCCCEEEEEEeeC-CCeEEEec-CCcEEEeccCCCceeec--ccccCCccee--eCC-CCCEEEEEECCCcEEEEe
Q 003360 187 KMPFLDSSITAMKLITG-NSFILSSA-DEDYSLLAKSVPPLLDF--ETKLKDGSQS--HSK-VKNLFITGHSDGAINFWD 259 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~~~~~~~--~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD 259 (826)
....|+..|+|++|+|. +..|++|+ |+.|++|+......... ..+|.+.|.+ |+| ++++|+||+.||+|+|||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 45678899999999994 56788888 99999997654322211 3679999999 997 689999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
+.+..... +.. ...+...+.+++|+|++.+|++|+.||.|++||++....
T Consensus 194 ~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~---------------------- 243 (435)
T 4e54_B 194 FKGNILRV---FAS-----SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL---------------------- 243 (435)
T ss_dssp TTSCEEEE---EEC-----CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC----------------------
T ss_pred ccCCceeE---Eec-----cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee----------------------
Confidence 97655322 110 123346788999999999999999999999999874321
Q ss_pred EEEeeccCCeEEEEEccCCC-EEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 340 VKVMKINGSIISLNMNRNSQ-HLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
..+..|...|++++|+|++. ++++|+.||+|+|||+++...........+|..+|++++|+| ++.+|++++.|
T Consensus 244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp------dg~~l~s~~~D 317 (435)
T 4e54_B 244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP------DGARLLTTDQK 317 (435)
T ss_dssp CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT------TSSEEEEEESS
T ss_pred EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC------CCCeeEEEcCC
Confidence 22334678899999999876 788999999999999988765533333457889999999998 69999999999
Q ss_pred CcEEEEECCCCceEEeeeccCC
Q 003360 419 SSVLVLDSDNGNMLSTNLIHPK 440 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~~~~~~ 440 (826)
++|++||..++++...+..|..
T Consensus 318 ~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 318 SEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp SCEEEEESSSSSSEEEECCCCC
T ss_pred CEEEEEECCCCccceEEecccc
Confidence 9999999999988877655543
No 55
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.95 E-value=6.3e-27 Score=255.40 Aligned_cols=236 Identities=14% Similarity=0.110 Sum_probs=173.7
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEE------eeCCCeEEEec-CCcEEEe
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKL------ITGNSFILSSA-DEDYSLL 218 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~f------s~~~~~l~~~~-d~~i~~w 218 (826)
..+++++.+|.+.+||...- ......+..|...|+++.| +++++.+++++ |+.+++|
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAP----------------EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVW 144 (357)
T ss_dssp CCEEEEETTSCEEEECTTSC----------------SSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred ceEEEecCCCeEEEEeCCCC----------------CccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEE
Confidence 44566677788889987651 1123446789999999955 67899999988 9999999
Q ss_pred ccCCCc--eeecccccCC----ccee------eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCe
Q 003360 219 AKSVPP--LLDFETKLKD----GSQS------HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPL 286 (826)
Q Consensus 219 ~~~~~~--~~~~~~~h~g----~V~~------~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V 286 (826)
+..... ...+ ..|.+ .+.+ |++++++|++|+.||.|++||+....... ...|...|
T Consensus 145 d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-----------~~~~~~~v 212 (357)
T 3i2n_A 145 DPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-----------ETNIKNGV 212 (357)
T ss_dssp CTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-----------EEECSSCE
T ss_pred eCCCCCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-----------ecCCCCce
Confidence 765432 3333 33333 5554 57899999999999999999996555211 12466899
Q ss_pred EEEEEeC---CCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEE
Q 003360 287 TALYYDG---TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLA 362 (826)
Q Consensus 287 ~~l~fsp---~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~la 362 (826)
++++|+| ++.+|++|+.||.|++||++...... ... ......|...|++++|+|++. +|+
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------------~~~--~~~~~~~~~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK--------------GFA--SVSEKAHKSTVWQVRHLPQNRELFL 276 (357)
T ss_dssp EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT--------------EEE--EEEEECCSSCEEEEEEETTEEEEEE
T ss_pred EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc--------------cee--eeccCCCcCCEEEEEECCCCCcEEE
Confidence 9999999 99999999999999999998543211 100 012335788899999999998 899
Q ss_pred EEecCCeEEEEecCCCeeE----------------EeeecccCCCCCeeEEEEeecccCCCCCcEEE-EEECCCcEEEEE
Q 003360 363 VGSDQGYVYLLDTEGPTVL----------------YQKHIASDISSGIVSLQFETCSLQGFEKNFLV-IATKDSSVLVLD 425 (826)
Q Consensus 363 sGs~dG~V~vwD~~~~~~l----------------~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~-sgs~Dg~V~iwd 425 (826)
+|+.||.|++||++.+... ........|..+|++++|++ ++.+|+ +++.|+.|++||
T Consensus 277 ~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 277 TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP------DKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS------SSTTEEEEEETTSEEEEEE
T ss_pred EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC------CCCeEEEEecCCCcEEEEE
Confidence 9999999999999865321 11122346889999999999 588787 899999999999
Q ss_pred CCCCce
Q 003360 426 SDNGNM 431 (826)
Q Consensus 426 ~~tg~~ 431 (826)
+.+.+.
T Consensus 351 ~~~~~~ 356 (357)
T 3i2n_A 351 VTKLNK 356 (357)
T ss_dssp ECC---
T ss_pred CCCccc
Confidence 987653
No 56
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.8e-26 Score=243.54 Aligned_cols=290 Identities=10% Similarity=0.150 Sum_probs=214.7
Q ss_pred ccccccccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeee
Q 003360 4 NVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYA 83 (826)
Q Consensus 4 ~~~~~~~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~ 83 (826)
.++..+..|...|++++| |++.+||+|+.||.|++||+.++..... + ..+..+|..+.|..
T Consensus 9 ~~~~~l~~h~~~v~~~~~--~~~~~l~s~~~dg~v~vw~~~~~~~~~~------------~----~~~~~~v~~~~~~~- 69 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA--VDDSKVASVSRDGTVRLWSKDDQWLGTV------------V----YTGQGFLNSVCYDS- 69 (313)
T ss_dssp EEEEEECCCSSCEEEEEE--EETTEEEEEETTSEEEEEEESSSEEEEE------------E----EECSSCEEEEEEET-
T ss_pred HHHHHhhCCCCCcEEEEe--cCCCEEEEEEcCCcEEEEECCCCEEEEE------------e----ecCCccEEEEEECC-
Confidence 345666778899999999 6999999999999999999876411100 0 01123455555543
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
++ ..+++++.+|.+.+|+..
T Consensus 70 ---~~---------------------------------------------------------~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 70 ---EK---------------------------------------------------------ELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp ---TT---------------------------------------------------------TEEEEEETTSCEEEEETT
T ss_pred ---CC---------------------------------------------------------CEEEEecCCCeEEEEEee
Confidence 11 334555566777777765
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eC
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HS 240 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s 240 (826)
.. . .......+..|...|++++| ++..+++++ |+.+++|+.. .....+ ..|.+.+.+ ++
T Consensus 90 ~~-------~-------~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~-~~~~~~-~~~~~~v~~~~~~ 151 (313)
T 3odt_A 90 AT-------S-------GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG-SLVYNL-QAHNASVWDAKVV 151 (313)
T ss_dssp CC-------T-------TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-EEEEEE-ECCSSCEEEEEEE
T ss_pred ec-------C-------CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC-cEEEec-ccCCCceeEEEEc
Confidence 41 0 11122345789999999999 677888888 9999999832 233333 668888888 65
Q ss_pred C-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc
Q 003360 241 K-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 241 ~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
+ +++++++|+.||.|++||..... ..+. ..|...|++++|+|++. +++|+.||.|++||++.+..
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~-------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~-- 217 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQNDKVI----KTFS-------GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV-- 217 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTEEE----EEEC-------SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE--
T ss_pred cCCCCEEEEEECCCCEEEEecCceE----EEEe-------ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh--
Confidence 5 89999999999999999942211 2222 12678999999999998 99999999999999984332
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
. ..+..|.+.|++++|+|++ .+++|+.||.|++||+++++++.... .|..+|.++.|
T Consensus 218 ---------------~----~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~i~~~~~ 274 (313)
T 3odt_A 218 ---------------L----RTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT---LPAISIWSVDC 274 (313)
T ss_dssp ---------------E----EEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE---CSSSCEEEEEE
T ss_pred ---------------h----hhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe---ccCceEEEEEE
Confidence 1 3334578889999999999 69999999999999999999885554 57779999999
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
++ ++. +++++.||.|++||..+++.+..
T Consensus 275 ~~------~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 275 MS------NGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp CT------TSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred cc------CCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 99 466 77899999999999998876644
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=4.9e-25 Score=250.84 Aligned_cols=240 Identities=12% Similarity=0.151 Sum_probs=183.4
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee--CCCeEEEec-CCcEEEeccCCCc
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT--GNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~--~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
++.++.+|.+.+||..+- .....+..|...|++++|++ ++..+++++ |+.+++|+.....
T Consensus 176 l~s~s~dg~i~vwd~~~~-----------------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~ 238 (464)
T 3v7d_B 176 LVSGSTDRTVRVWDIKKG-----------------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238 (464)
T ss_dssp EEEEETTSCEEEEETTTT-----------------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCC
T ss_pred EEEEeCCCCEEEEECCCC-----------------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCc
Confidence 455566678888887651 12344678999999999995 678889988 9999999654322
Q ss_pred e-----------------------eecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccccccccccc
Q 003360 225 L-----------------------LDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSL 281 (826)
Q Consensus 225 ~-----------------------~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~ 281 (826)
. .....+|...+.+++++++++++|+.||+|++||+..... +.. +..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~--------~~~ 308 (464)
T 3v7d_B 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC--LYI--------LSG 308 (464)
T ss_dssp CC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE--EEE--------ECC
T ss_pred ccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--EEE--------ecC
Confidence 1 1223567888888888999999999999999999954442 222 246
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE
Q 003360 282 SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL 361 (826)
Q Consensus 282 h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 361 (826)
|...|++++|+|++..|++|+.||.|++||++++.. . ..+..|...|++++|+ +.+|
T Consensus 309 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-----------------~----~~~~~h~~~v~~~~~~--~~~l 365 (464)
T 3v7d_B 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL-----------------M----YTLQGHTALVGLLRLS--DKFL 365 (464)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE-----------------E----EEECCCSSCEEEEEEC--SSEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-----------------E----EEEeCCCCcEEEEEEc--CCEE
Confidence 788999999999999999999999999999984322 1 3344577889999998 5689
Q ss_pred EEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC
Q 003360 362 AVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK 441 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~ 441 (826)
++|+.||+|++||+.++...+.. .+...+..+.|.+ ++.+|++|+ |+.|++||..+|+++..+ ....
T Consensus 366 ~s~s~dg~v~vwd~~~~~~~~~~----~~~~~~~~~~~~~------~~~~l~~~~-dg~i~iwd~~~g~~~~~~--~~~~ 432 (464)
T 3v7d_B 366 VSAAADGSIRGWDANDYSRKFSY----HHTNLSAITTFYV------SDNILVSGS-ENQFNIYNLRSGKLVHAN--ILKD 432 (464)
T ss_dssp EEEETTSEEEEEETTTCCEEEEE----ECTTCCCEEEEEE------CSSEEEEEE-TTEEEEEETTTCCEEESC--TTTT
T ss_pred EEEeCCCcEEEEECCCCceeeee----cCCCCccEEEEEe------CCCEEEEec-CCeEEEEECCCCcEEehh--hccC
Confidence 99999999999999998877444 3555777888988 588888888 999999999999998763 2222
Q ss_pred CCcceEEEE
Q 003360 442 PSRALFMQI 450 (826)
Q Consensus 442 ~~~~lsi~~ 450 (826)
...+.++.+
T Consensus 433 ~~~v~~v~~ 441 (464)
T 3v7d_B 433 ADQIWSVNF 441 (464)
T ss_dssp CSEEEEEEE
T ss_pred CCcEEEEEe
Confidence 344445444
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=3.9e-26 Score=255.88 Aligned_cols=254 Identities=10% Similarity=0.069 Sum_probs=189.7
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
...+++++.+|.+++||...... ...+..| ..+....|+++++.+++++ |+.|++|+....
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~~~-----------------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 129 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIRDG-----------------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN 129 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSEET-----------------TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC
T ss_pred CCeEEEEEcCCcEEEEEecccce-----------------eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc
Confidence 35578888899999999765210 0111233 4455567899999999998 999999987655
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
.......+|.+.|.+ |+|++++|++|+.||+|++||+..... ...+..|...|++++|+|++.+|++|
T Consensus 130 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~----------~~~~~~h~~~v~~~~~~~~~~~l~s~ 199 (420)
T 3vl1_A 130 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN----------PRTLIGHRATVTDIAIIDRGRNVLSA 199 (420)
T ss_dssp EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC----------CEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC----------ceEEcCCCCcEEEEEEcCCCCEEEEE
Confidence 555444689999999 999999999999999999999943331 11234688999999999999999999
Q ss_pred eCCCcEEEEEeCCCCCc--------cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEE
Q 003360 302 DQSGMVRIFKLKYEPHA--------IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLL 373 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~--------~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vw 373 (826)
+.||.|++||++++... +...+..+.+.+.... .....+...|++++|+|++.+|++|+.||.|++|
T Consensus 200 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 200 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR-----QLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS-----SCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc-----eeeecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence 99999999999865221 1111222222111111 0011234678889999999999999999999999
Q ss_pred ecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc-EEEEEECCCcEEEEECCCCce-EEeeeccC
Q 003360 374 DTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-FLVIATKDSSVLVLDSDNGNM-LSTNLIHP 439 (826)
Q Consensus 374 D~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~l~sgs~Dg~V~iwd~~tg~~-i~~~~~~~ 439 (826)
|++++..+... ...|...|++++|+| ++. +|++|+.||.|++||+.+++. +..+..+.
T Consensus 275 d~~~~~~~~~~--~~~~~~~v~~~~~~~------~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 334 (420)
T 3vl1_A 275 NVFSKEQTIQL--PSKFTCSCNSLTVDG------NNANYIYAGYENGMLAQWDLRSPECPVGEFLINE 334 (420)
T ss_dssp ETTTCCEEEEE--CCTTSSCEEEEEECS------SCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST
T ss_pred ECCCCceeEEc--ccccCCCceeEEEeC------CCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC
Confidence 99999887444 356888999999999 466 999999999999999998854 56654443
No 59
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=1.8e-25 Score=252.37 Aligned_cols=284 Identities=12% Similarity=0.122 Sum_probs=183.3
Q ss_pred CCCEEEEEEeeCC--CeEEEec-CCcEEEeccCCCce----------------------------------------eec
Q 003360 192 DSSITAMKLITGN--SFILSSA-DEDYSLLAKSVPPL----------------------------------------LDF 228 (826)
Q Consensus 192 ~~~Vt~~~fs~~~--~~l~~~~-d~~i~~w~~~~~~~----------------------------------------~~~ 228 (826)
...|++++|+|++ ..+++++ |+.|++|+...... ..+
T Consensus 93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 4679999999998 7888888 99999996433111 112
Q ss_pred ccccCCccee--eCCCCCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCC
Q 003360 229 ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQS 304 (826)
Q Consensus 229 ~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~d 304 (826)
..+|.+.|.+ |+|++++|++| .||+|++||+. ......+..++ ...+..|...|++++|+|++ .+|++|+.|
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 248 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIK---PANMEELTEVITAAEFHPNSCNTFVYSSSK 248 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECC---CSSGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecc---cccccccCcceEEEEECCCCCcEEEEEeCC
Confidence 3579999988 99999999999 89999999995 33321111122 12345788999999999998 999999999
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC-CeeEEe
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG-PTVLYQ 383 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~-~~~l~~ 383 (826)
|.|++||++.+.... ..+..+....+.... ..+..+.+.|++++|+|+|.+|++|+. |.|+|||++. +.++..
T Consensus 249 g~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 249 GTIRLCDMRASALCD-RHSKLFEEPEDPSNR----SFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVET 322 (447)
T ss_dssp SCEEEEETTTCSSSC-TTCEEECCC-----C----CHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCC
T ss_pred CeEEEEECcCCcccc-ceeeEeccCCCcccc----ccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccce
Confidence 999999998654310 001111000000000 001112348999999999999999999 9999999987 666644
Q ss_pred eecccCCCC---------------CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCC--CCcce
Q 003360 384 KHIASDISS---------------GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKK--PSRAL 446 (826)
Q Consensus 384 ~~~~~~~~~---------------~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~--~~~~l 446 (826)
.. .|.. .+..++|+| ++.+|++|+.||.|++||..+++.+... .+... +....
T Consensus 323 ~~---~~~~~~~~l~~~~~~~~i~~~~~~~~s~------~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~ 392 (447)
T 3dw8_B 323 YQ---VHEYLRSKLCSLYENDCIFDKFECCWNG------SDSVVMTGSYNNFFRMFDRNTKRDITLE-ASRENNKPRTVL 392 (447)
T ss_dssp EE---SCGGGTTTHHHHHHTSGGGCCCCEEECT------TSSEEEEECSTTEEEEEETTTCCEEEEE-CCSTTCCTTCBC
T ss_pred ee---ccccccccccccccccccccceEEEECC------CCCEEEEeccCCEEEEEEcCCCcceeee-eccccccccccc
Confidence 43 2321 133489998 6999999999999999999998876332 22211 00000
Q ss_pred EE-EEecCCCCcccCccccccc--cc-cCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 447 FM-QILNGQDGLARGANLSNVA--GM-NKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 447 si-~~l~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
.. ..... . .......... .. .....+ .|+|++.++++++.+.+++|+-.
T Consensus 393 ~~~~~~~~-~--~~~~~~~~~~~~~~~~~i~~~-~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 393 KPRKVCAS-G--KRKKDEISVDSLDFNKKILHT-AWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp CCCCEECS-S--CCCTTCEEGGGCCTTSCCCEE-EECSSSSEEEEECSSCEEEEECC
T ss_pred CCcccccc-C--CcccccccccccccCCceeEE-EECCCCCEEEEEecceeeeeccc
Confidence 00 00000 0 0000000000 00 111112 57888899999999999999753
No 60
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.4e-26 Score=247.96 Aligned_cols=213 Identities=10% Similarity=0.083 Sum_probs=166.3
Q ss_pred cccCCCEEEEEEeeC--CCeEEEec-CCcEEEeccCCCc--eeecccccCCccee--eCCC--CCEEEEEECCCcEEEEe
Q 003360 189 PFLDSSITAMKLITG--NSFILSSA-DEDYSLLAKSVPP--LLDFETKLKDGSQS--HSKV--KNLFITGHSDGAINFWD 259 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~--~~~l~~~~-d~~i~~w~~~~~~--~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~DGtVriWD 259 (826)
..|...|++++|+++ +..+++++ |+.|++|+..... .......|.+.|.+ |+|+ +++|++|+.||+|++||
T Consensus 52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d 131 (379)
T 3jrp_A 52 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence 467788999999977 89999998 9999999765543 22223668899988 9999 99999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeC-------------CCCEEEEEeCCCcEEEEEeCCCCCccccceEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-------------TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-------------~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
+......... .+..|...|++++|+| ++.+|++|+.||.|++||++.+....
T Consensus 132 ~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------- 196 (379)
T 3jrp_A 132 FKENGTTSPI--------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY------- 196 (379)
T ss_dssp CCTTSCCCEE--------EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-------
T ss_pred cCCCCceeeE--------EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-------
Confidence 9443211111 1245778999999999 69999999999999999998543210
Q ss_pred eecCCCCeEEEEEEEEeeccCCeEEEEEccC---CCEEEEEecCCeEEEEecCCCeeE--EeeecccCCCCCeeEEEEee
Q 003360 327 TGSKKGNSHIIHSVKVMKINGSIISLNMNRN---SQHLAVGSDQGYVYLLDTEGPTVL--YQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 327 ~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~---g~~lasGs~dG~V~vwD~~~~~~l--~~~~~~~~~~~~V~sl~f~~ 401 (826)
... .....|...|++++|+|+ +.+|++|+.||.|++||++.+... ........+...|++++|+|
T Consensus 197 -------~~~---~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 266 (379)
T 3jrp_A 197 -------VLE---STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 266 (379)
T ss_dssp -------EEE---EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS
T ss_pred -------eeE---EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC
Confidence 110 234456788999999999 899999999999999999887421 11222235788999999999
Q ss_pred cccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 402 CSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 402 ~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
++.+|++++.||.|++|+..++...
T Consensus 267 ------~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 267 ------SGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp ------SSCCEEEEESSSSEEEEEEEETTEE
T ss_pred ------CCCEEEEecCCCcEEEEeCCCCCcc
Confidence 5999999999999999999865433
No 61
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=2.2e-26 Score=254.16 Aligned_cols=304 Identities=11% Similarity=0.045 Sum_probs=202.9
Q ss_pred ccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEE
Q 003360 12 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLY 91 (826)
Q Consensus 12 ~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ll 91 (826)
.+..|++++| +|+|++||+|+.||.|++||+.++.. ..+. ....+..+|..+.|.. ++
T Consensus 10 ~~~~v~~~~~-s~~g~~l~~~~~d~~i~iw~~~~~~~----------~~~~----~~~~h~~~v~~~~~s~----~~--- 67 (377)
T 3dwl_C 10 LPKPSYEHAF-NSQRTEFVTTTATNQVELYEQDGNGW----------KHAR----TFSDHDKIVTCVDWAP----KS--- 67 (377)
T ss_dssp CSSCCSCCEE-CSSSSEEECCCSSSCBCEEEEETTEE----------EECC----CBCCCSSCEEEEEECT----TT---
T ss_pred CCCcEEEEEE-CCCCCEEEEecCCCEEEEEEccCCce----------EEEE----EEecCCceEEEEEEeC----CC---
Confidence 4668999999 57999999999999999999886410 0000 1112445666666643 11
Q ss_pred EEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhh
Q 003360 92 IMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQ 171 (826)
Q Consensus 92 i~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~ 171 (826)
..++.++.+|.+.+||...-.
T Consensus 68 ------------------------------------------------------~~l~s~s~d~~v~vwd~~~~~----- 88 (377)
T 3dwl_C 68 ------------------------------------------------------NRIVTCSQDRNAYVYEKRPDG----- 88 (377)
T ss_dssp ------------------------------------------------------CCEEEEETTSSEEEC-----------
T ss_pred ------------------------------------------------------CEEEEEeCCCeEEEEEcCCCC-----
Confidence 223455556778888876511
Q ss_pred ccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc----eeecccccCCccee--eCCCCC
Q 003360 172 YQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP----LLDFETKLKDGSQS--HSKVKN 244 (826)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~----~~~~~~~h~g~V~~--~s~~~~ 244 (826)
.......+..|...|++++|+|+++.+++++ |+.|++|+..... ...+..+|.+.|.+ |+|+++
T Consensus 89 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 89 ---------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp ---------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred ---------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 0112344567999999999999999999988 9999999765433 33443349999999 999999
Q ss_pred EEEEEECCCcEEEEeCCCCceeeee-------ec-ccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 245 LFITGHSDGAINFWDVSCPLFLLIL-------SL-KQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 245 ~l~Tgs~DGtVriWD~s~~~~~~i~-------~l-~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
+|++|+.||+|++||+......... .+ ..+....+ .|...|++++|+|++++|++|+.||.|++||++.+.
T Consensus 160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 9999999999999998422100000 00 00011223 678899999999999999999999999999998654
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee----------------
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV---------------- 380 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~---------------- 380 (826)
... ... .....|..+|++++|+|++.+|++|+.++.+ +|+......
T Consensus 239 ~~~--------------~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T 3dwl_C 239 QPP--------------RAL---ITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT 300 (377)
T ss_dssp SCE--------------EEC---CCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred Ccc--------------eee---EeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence 310 000 2234567789999999999999999887766 776642210
Q ss_pred ----------------------EEe-----------eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 381 ----------------------LYQ-----------KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 381 ----------------------l~~-----------~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
.+. ......|...|+++.+.+. .+.+...|++|+.||.|++||+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~--~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAG--TPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEE--ETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCC--CCCceEEEEeecCCCcEEEecC
Confidence 000 0011238889999997663 0001127999999999999985
No 62
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=2.9e-25 Score=237.82 Aligned_cols=213 Identities=9% Similarity=0.141 Sum_probs=166.5
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC---CceeecccccCCccee--eCC--CCCEEEEEECCCcEEEE
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV---PPLLDFETKLKDGSQS--HSK--VKNLFITGHSDGAINFW 258 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~---~~~~~~~~~h~g~V~~--~s~--~~~~l~Tgs~DGtVriW 258 (826)
.+..|...|++++|+++++.+++++ |++|++|+... .....+ .+|.+.|.+ |++ ++++|+||+.||+|+||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4578999999999999999999999 99999997542 233344 789999998 765 48999999999999999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|+.......+. .+..|...|++++|+|+ +.+|++|+.||+|++||++..... ..
T Consensus 83 d~~~~~~~~~~--------~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~--------------~~-- 138 (297)
T 2pm7_B 83 KEENGRWSQIA--------VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT--------------SP-- 138 (297)
T ss_dssp EBSSSCBCCCE--------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB--------------CC--
T ss_pred EcCCCceEEEE--------EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce--------------ee--
Confidence 99543211111 12467889999999998 889999999999999999854210 01
Q ss_pred EEEEEEeeccCCeEEEEEccC-------------CCEEEEEecCCeEEEEecCCCeeEE-eeecccCCCCCeeEEEEeec
Q 003360 337 IHSVKVMKINGSIISLNMNRN-------------SQHLAVGSDQGYVYLLDTEGPTVLY-QKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~-------------g~~lasGs~dG~V~vwD~~~~~~l~-~~~~~~~~~~~V~sl~f~~~ 402 (826)
.....|...|++++|+|+ +.+||+|+.||+|+|||++++...+ ......+|...|.+++|+|.
T Consensus 139 ---~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~ 215 (297)
T 2pm7_B 139 ---IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215 (297)
T ss_dssp ---EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred ---eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCC
Confidence 334456778999999997 5799999999999999998765211 11223579999999999993
Q ss_pred ccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 403 SLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 403 ~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
. ..+.+|++++.|++|++||..++.
T Consensus 216 ~---~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 216 V---LLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp C---SSSEEEEEEETTSCEEEEEESSTT
T ss_pred C---CCceEEEEEECCCcEEEEEeCCCC
Confidence 0 014899999999999999988643
No 63
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=2.4e-25 Score=244.51 Aligned_cols=247 Identities=14% Similarity=0.136 Sum_probs=194.9
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC---ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP---PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~---~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
+..|..+|++++|+|+++++++++ |+.|++|+.... ....+ .+|.+.|.+ |+|++++|++|+.||+|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 456899999999999999999997 999999976654 33333 679999988 99999999999999999999995
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
......... +..|...|++++|+|++.+|++|+.||.|++||++...... ... ..
T Consensus 83 ~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~--------------~~~---~~ 137 (372)
T 1k8k_C 83 GRTWKPTLV--------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW--------------VCK---HI 137 (372)
T ss_dssp TTEEEEEEE--------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE--------------EEE---EE
T ss_pred CCeeeeeEE--------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce--------------eee---ee
Confidence 444222111 23477899999999999999999999999999998543200 000 12
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC------------------CCeeEEeeecccCCCCCeeEEEEeecc
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE------------------GPTVLYQKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~------------------~~~~l~~~~~~~~~~~~V~sl~f~~~~ 403 (826)
...|...|++++|+|++.+|++|+.||.|++||++ .+.++... ..|...|.++.|++
T Consensus 138 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~-- 212 (372)
T 1k8k_C 138 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES---SSSCGWVHGVCFSA-- 212 (372)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC---CCCSSCEEEEEECS--
T ss_pred ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec---CCCCCeEEEEEECC--
Confidence 23457789999999999999999999999999954 45666333 37888999999999
Q ss_pred cCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCC
Q 003360 404 LQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQW 483 (826)
Q Consensus 404 ~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (826)
++.+|++++.|+.|++||..+++.+..+..+. ..+.++.+ .+++.
T Consensus 213 ----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~----------------------------~~~~~ 257 (372)
T 1k8k_C 213 ----NGSRVAWVSHDSTVCLADADKKMAVATLASET---LPLLAVTF----------------------------ITESS 257 (372)
T ss_dssp ----SSSEEEEEETTTEEEEEEGGGTTEEEEEECSS---CCEEEEEE----------------------------EETTE
T ss_pred ----CCCEEEEEeCCCEEEEEECCCCceeEEEccCC---CCeEEEEE----------------------------ecCCC
Confidence 58999999999999999999999988875543 22333333 23446
Q ss_pred EEEEeecCcEEEEeccc
Q 003360 484 FVLLCSEKAACAYSLSH 500 (826)
Q Consensus 484 ~vv~~se~~irv~sl~~ 500 (826)
+++++.++.+++|++..
T Consensus 258 ~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 258 LVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEEETTSSCEEEEEET
T ss_pred EEEEEeCCeEEEEEccC
Confidence 78888888999999974
No 64
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=4.4e-25 Score=246.77 Aligned_cols=231 Identities=10% Similarity=0.107 Sum_probs=176.0
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-Cc
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV-PP 224 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-~~ 224 (826)
.+++++.+|.+.+||.... .....+..|...|++++| ++..+++++ |+.|++|+... ..
T Consensus 148 ~l~~~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQ-----------------TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH 208 (401)
T ss_dssp EEEEEETTSCEEEEETTTC-----------------CEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC
T ss_pred EEEEECCCCeEEEEECcCC-----------------eEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc
Confidence 3455556677888876541 123446789999999999 567888888 99999997652 22
Q ss_pred eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEE
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSG 301 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasg 301 (826)
......+|.+.|.+ |+|++++|++|+.||+|++||+..... +.. +..|...|++++|+|++ .++++|
T Consensus 209 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~--------~~~~~~~v~~~~~~p~~~~ll~~~ 278 (401)
T 4aez_A 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP--KFT--------KTNHNAAVKAVAWCPWQSNLLATG 278 (401)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE--EEE--------ECCCSSCCCEEEECTTSTTEEEEE
T ss_pred eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc--cEE--------ecCCcceEEEEEECCCCCCEEEEe
Confidence 22223679999998 999999999999999999999954432 122 23577899999999976 566776
Q ss_pred e--CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE--EecCCeEEEEecCC
Q 003360 302 D--QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV--GSDQGYVYLLDTEG 377 (826)
Q Consensus 302 s--~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las--Gs~dG~V~vwD~~~ 377 (826)
+ .||.|++||+.++.. +....+...|++++|+|++..+++ |+.||.|+|||+.+
T Consensus 279 ~gs~d~~i~i~d~~~~~~----------------------~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 279 GGTMDKQIHFWNAATGAR----------------------VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp CCTTTCEEEEEETTTCCE----------------------EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred cCCCCCEEEEEECCCCCE----------------------EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 5 799999999984432 344456778999999999999999 55899999999998
Q ss_pred CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 378 PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 378 ~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+........ .+|...|.+++|++ ++.+|++++.||.|++|++.+++.+...
T Consensus 337 ~~~~~~~~~-~~h~~~v~~~~~s~------dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 337 SGLTKQVDI-PAHDTRVLYSALSP------DGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp TEEEEEEEE-ECCSSCCCEEEECT------TSSEEEEECTTSEEEEEECCC-------
T ss_pred ccceeEEEe-cCCCCCEEEEEECC------CCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 776644332 47889999999999 6999999999999999999998877653
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=1.6e-26 Score=250.00 Aligned_cols=206 Identities=12% Similarity=0.157 Sum_probs=157.7
Q ss_pred cccCCCEEEEEEee--CCCeEEEec-CCcEEEeccCCCc---eeecccccCCccee--eCCC--CCEEEEEECCCcEEEE
Q 003360 189 PFLDSSITAMKLIT--GNSFILSSA-DEDYSLLAKSVPP---LLDFETKLKDGSQS--HSKV--KNLFITGHSDGAINFW 258 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~--~~~~l~~~~-d~~i~~w~~~~~~---~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~DGtVriW 258 (826)
..|...|++++|++ ++..+++++ |++|++|+..... ...+ .+|.+.|.+ |+|+ +.+|++|+.||+|++|
T Consensus 54 ~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lw 132 (316)
T 3bg1_A 54 RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 132 (316)
T ss_dssp ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEE
T ss_pred cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEE
Confidence 56888899999986 488999988 9999999765432 2223 579999988 9987 7899999999999999
Q ss_pred eCCCC-ceeeeeecccccccccccCCCCeEEEEEeCC-----------------CCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 259 DVSCP-LFLLILSLKQQSEKDFSLSGIPLTALYYDGT-----------------SRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 259 D~s~~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-----------------~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
|+... .... ...+..|...|.+++|+|+ +.+|++|+.|++|++||++.....
T Consensus 133 d~~~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-- 202 (316)
T 3bg1_A 133 TYTGEGQWEV--------KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-- 202 (316)
T ss_dssp EECSSSCEEE--------CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE--
T ss_pred ecCCCCCcce--------eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc--
Confidence 99543 2111 1112467789999999997 468999999999999999632110
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC----CEEEEEecCCeEEEEecCCCee-EEeeecccCCCCCee
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS----QHLAVGSDQGYVYLLDTEGPTV-LYQKHIASDISSGIV 395 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g----~~lasGs~dG~V~vwD~~~~~~-l~~~~~~~~~~~~V~ 395 (826)
... ..+..|...|++++|+|++ .+||+|+.||+|+|||+..... .........|...|.
T Consensus 203 -------------~~~---~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~ 266 (316)
T 3bg1_A 203 -------------KEE---QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVW 266 (316)
T ss_dssp -------------EEE---ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEE
T ss_pred -------------cee---eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEE
Confidence 000 2234567889999999986 7899999999999999976310 000111135678999
Q ss_pred EEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 396 SLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+++|+| ++.+|++++.|++|++|+..
T Consensus 267 ~v~~sp------~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 267 HVSWSI------TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECT------TTCCEEEEESSSCEEEEEEC
T ss_pred EEEEcC------CCCEEEEEcCCCeEEEEEEC
Confidence 999999 59999999999999999976
No 66
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=2.3e-25 Score=267.56 Aligned_cols=289 Identities=15% Similarity=0.143 Sum_probs=214.6
Q ss_pred eeecccCCCEEEEEEeeCC-CeEEEec-CCcEEEeccCCCc-----eeecccccCCccee--eCCCCCEEEEEECCCcEE
Q 003360 186 LKMPFLDSSITAMKLITGN-SFILSSA-DEDYSLLAKSVPP-----LLDFETKLKDGSQS--HSKVKNLFITGHSDGAIN 256 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~-~~l~~~~-d~~i~~w~~~~~~-----~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVr 256 (826)
-.+..|...|++++|++++ ..+++++ |++|++|+..... ......+|.+.|.+ |+|++++|+||+.||+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 3478999999999999875 6788888 9999999654211 11123679999998 999999999999999999
Q ss_pred EEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 257 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|||+..... +. .+..|...|++++|+|++++|++|+.|++|++||...... .. ....
T Consensus 456 vwd~~~~~~--~~--------~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~------~~--~~~~----- 512 (694)
T 3dm0_A 456 LWDLAAGVS--TR--------RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK------YT--ISEG----- 512 (694)
T ss_dssp EEETTTTEE--EE--------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE------EE--ECSS-----
T ss_pred EEECCCCcc--ee--------EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc------ee--eccC-----
Confidence 999954442 11 2347889999999999999999999999999999753210 00 0000
Q ss_pred EEEEEEeeccCCeEEEEEccCC--CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 337 IHSVKVMKINGSIISLNMNRNS--QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g--~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
...|...|++++|+|++ ..+++|+.||+|+|||++++++.... .+|...|++++|+| ++.+|++
T Consensus 513 -----~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~---~~h~~~v~~v~~sp------dg~~l~s 578 (694)
T 3dm0_A 513 -----GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL---AGHTGYVSTVAVSP------DGSLCAS 578 (694)
T ss_dssp -----TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECT------TSSEEEE
T ss_pred -----CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE---cCCCCCEEEEEEeC------CCCEEEE
Confidence 01356679999999987 57999999999999999998887544 47899999999999 6999999
Q ss_pred EECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEE
Q 003360 415 ATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAAC 494 (826)
Q Consensus 415 gs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~ir 494 (826)
|+.|++|++||+.+++.+..+.. ...+.++. +++++.++++++++.|+
T Consensus 579 g~~Dg~i~iwd~~~~~~~~~~~~----~~~v~~~~----------------------------~sp~~~~l~~~~~~~i~ 626 (694)
T 3dm0_A 579 GGKDGVVLLWDLAEGKKLYSLEA----NSVIHALC----------------------------FSPNRYWLCAATEHGIK 626 (694)
T ss_dssp EETTSBCEEEETTTTEEEECCBC----SSCEEEEE----------------------------ECSSSSEEEEEETTEEE
T ss_pred EeCCCeEEEEECCCCceEEEecC----CCcEEEEE----------------------------EcCCCcEEEEEcCCCEE
Confidence 99999999999999988766422 12222222 34456788888999999
Q ss_pred EEeccccccccceeeeeeecCC----------------CCce-eeEeeeeCCceEEEEEEeeceEEEeccC
Q 003360 495 AYSLSHAVQGVKKVLYKKKFHS----------------SSCC-WASTFYSGSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 495 v~sl~~~~~g~~k~~~k~~~~~----------------~~c~-~~~~~~~~~~~~lv~~~~~G~I~i~slP 548 (826)
||++.. ...+...+... .... ..++.-++.+..|+....||.|++|.+.
T Consensus 627 iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 627 IWDLES-----KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEETTT-----TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEECCC-----CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 999973 22222221110 0000 1122223778889999999999999864
No 67
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=2.4e-24 Score=232.65 Aligned_cols=234 Identities=18% Similarity=0.200 Sum_probs=186.6
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..+++.. +|.+.+||...- . . ...........|...|++++|+|+++.+++++ |+.+++|+.....
T Consensus 64 ~~l~~~~-dg~i~iw~~~~~-------~---~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 130 (337)
T 1gxr_A 64 RHVYTGG-KGCVKVWDISHP-------G---N--KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp SEEEEEC-BSEEEEEETTST-------T---C--CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred cEEEEcC-CCeEEEEECCCC-------C---c--eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence 4555555 999999998651 0 0 01112222337889999999999999999988 9999999765543
Q ss_pred --eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE
Q 003360 225 --LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 300 (826)
Q Consensus 225 --~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las 300 (826)
.......|.+.+.+ |+|++++|++|+.||.|++||+..... +.. +..|...|++++|+|++.+|++
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~--~~~--------~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL--VRQ--------FQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEE--------ECCCSSCEEEEEECTTSSEEEE
T ss_pred cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce--eee--------eecccCceEEEEECCCCCEEEE
Confidence 22223568888888 999999999999999999999955442 122 2357789999999999999999
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 380 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~ 380 (826)
++.||.|++||++.... +....+...|.+++|+|++.++++|+.||.|++||++++..
T Consensus 201 ~~~dg~i~~~d~~~~~~----------------------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQ----------------------LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp EETTSEEEEEETTTTEE----------------------EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred EecCCcEEEEECCCCce----------------------EeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence 99999999999984322 33345678899999999999999999999999999998876
Q ss_pred EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 381 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 381 l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.. ...|..+|.++.|++ ++.+|++++.||.|++||..+++.+..
T Consensus 259 ~~----~~~~~~~v~~~~~~~------~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 259 YQ----LHLHESCVLSLKFAY------CGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EE----ECCCSSCEEEEEECT------TSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EE----EcCCccceeEEEECC------CCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 51 246888999999999 599999999999999999999987754
No 68
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.94 E-value=2e-24 Score=244.81 Aligned_cols=227 Identities=14% Similarity=0.180 Sum_probs=178.7
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~ 225 (826)
.++.++.+|.+.+||...- .....+..|...|+++.++ +..+++++ |+.+++|+......
T Consensus 171 ~l~s~~~dg~i~vwd~~~~-----------------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~ 231 (445)
T 2ovr_B 171 IIISGSTDRTLKVWNAETG-----------------ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC 231 (445)
T ss_dssp EEEEEETTSCEEEEETTTT-----------------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE
T ss_pred EEEEEeCCCeEEEEECCcC-----------------cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE
Confidence 3456666788888887651 1234567899999999985 66788888 99999998765444
Q ss_pred eecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC
Q 003360 226 LDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG 305 (826)
Q Consensus 226 ~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg 305 (826)
.....+|.+.|.+...+++++++|+.||+|++||+..... +.. +..|...|++++| ++..+++|+.||
T Consensus 232 ~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~--------~~~~~~~v~~~~~--~~~~l~~~~~d~ 299 (445)
T 2ovr_B 232 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC--LHT--------LQGHTNRVYSLQF--DGIHVVSGSLDT 299 (445)
T ss_dssp EEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEE--EEE--------ECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred EEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcE--eEE--------ecCCCCceEEEEE--CCCEEEEEeCCC
Confidence 4333678999988333889999999999999999944432 222 2367789999999 788999999999
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
.|++||++++... .....+...+.++.++ +.++++|+.||.|++||+++++++....
T Consensus 300 ~i~i~d~~~~~~~---------------------~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 300 SIRVWDVETGNCI---------------------HTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp CEEEEETTTCCEE---------------------EEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred eEEEEECCCCCEE---------------------EEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 9999999854321 2333456778888875 5689999999999999999999887666
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
....|..+|+++.|+ +.+|++|+.||.|++||..+|+.+..+
T Consensus 357 ~~~~~~~~v~~~~~~--------~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--------KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp STTSCSSCEEEEEEC--------SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred cCCCCCCCEEEEEEC--------CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 545688999999995 578999999999999999999988876
No 69
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.94 E-value=1.5e-24 Score=240.94 Aligned_cols=319 Identities=10% Similarity=0.119 Sum_probs=211.3
Q ss_pred cccccccccceEEEecCC-CCCEEEEEEecCcEEEEeCCCcccccccccccccccccccc-CCCCCCcCCeEEEEEeeeC
Q 003360 7 QSVYHETKQVTSACWACP-IGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLN-LGYKLDKIPISSLKWVYAD 84 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p-~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pI~~l~W~~~~ 84 (826)
.....|...|++++| +| +|.+||+|+.||.|++||+.++......... ...... .....+..+|..+.|...
T Consensus 37 ~~~~~h~~~v~~~~~-s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~- 110 (408)
T 4a11_B 37 DVERIHGGGINTLDI-EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK----AVCSIGRDHPDVHRYSVETVQWYPH- 110 (408)
T ss_dssp EECCCCSSCEEEEEE-CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC----EEEEECTTCTTCCSSCEEEEEECTT-
T ss_pred eeeeccCCcEEEEEE-ecCCCCEEEEEcCCCeEEEEECCCCcccceEecc----ccccccccccccCCCcEEEEEEccC-
Confidence 344457889999999 57 9999999999999999999986222111000 000000 001123344555444320
Q ss_pred CCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchh
Q 003360 85 GKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQ 164 (826)
Q Consensus 85 ~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~ 164 (826)
+...++.++.+|.+.+||...
T Consensus 111 -----------------------------------------------------------~~~~l~s~~~d~~i~iwd~~~ 131 (408)
T 4a11_B 111 -----------------------------------------------------------DTGMFTSSSFDKTLKVWDTNT 131 (408)
T ss_dssp -----------------------------------------------------------CTTCEEEEETTSEEEEEETTT
T ss_pred -----------------------------------------------------------CCcEEEEEeCCCeEEEeeCCC
Confidence 112345566677888888765
Q ss_pred HHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC---eEEEec-CCcEEEeccCCCceeecccccCCccee--
Q 003360 165 IERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS---FILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS-- 238 (826)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~---~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~-- 238 (826)
. .......+...+.++.+++.+. .+++++ ++.+++|+............|.+.|.+
T Consensus 132 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 132 L------------------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp T------------------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred C------------------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 1 1111223677899999988554 788887 999999976654433333679999988
Q ss_pred eCCCCC-EEEEEECCCcEEEEeCCCCceeeeeeccc-------ccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 003360 239 HSKVKN-LFITGHSDGAINFWDVSCPLFLLILSLKQ-------QSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIF 310 (826)
Q Consensus 239 ~s~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~~l~~-------~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iw 310 (826)
|+|+++ ++++|+.||.|++||+..... .+..+.. ........|...|++++|+|++.+|++|+.||.|++|
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 999988 699999999999999933221 1111210 0111224677899999999999999999999999999
Q ss_pred EeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCC
Q 003360 311 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI 390 (826)
Q Consensus 311 d~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~ 390 (826)
|++.+....... +. . .......+........+..+++++.||.|++||+.+++++... .+|
T Consensus 273 d~~~~~~~~~~~---------~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---~~~ 333 (408)
T 4a11_B 273 NSSNGENTLVNY---------GK------V-CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML---KGH 333 (408)
T ss_dssp ETTTCCBCCCCC---------CC------C-CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE---CCC
T ss_pred ECCCCccceecc---------cc------c-cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee---ccC
Confidence 998654321000 00 0 0000111222223334456778888999999999999988555 378
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
...|++++|++ ++.+|++++.||.|++||+.+++.+..
T Consensus 334 ~~~v~~~~~s~------~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 334 YKTVDCCVFQS------NFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp SSCEEEEEEET------TTTEEEEEETTSCEEEEEECC------
T ss_pred CCeEEEEEEcC------CCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 89999999999 589999999999999999998877654
No 70
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=8.6e-25 Score=242.25 Aligned_cols=301 Identities=13% Similarity=0.104 Sum_probs=210.4
Q ss_pred eeeecccCCCEEEEEEeeCC-CeEEEec-CCcEEEeccCCCceeec-c-cccCCccee--eCC-CCCEEEEEECCCcEEE
Q 003360 185 MLKMPFLDSSITAMKLITGN-SFILSSA-DEDYSLLAKSVPPLLDF-E-TKLKDGSQS--HSK-VKNLFITGHSDGAINF 257 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~-~~l~~~~-d~~i~~w~~~~~~~~~~-~-~~h~g~V~~--~s~-~~~~l~Tgs~DGtVri 257 (826)
...+..|...|++++|++++ +.+++++ |+.|++|+......... . .+|.+.|.+ |+| ++++|++|+.||+|++
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 44578899999999999999 8999988 99999997664333332 2 369999999 999 7899999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
||+.+..... +.. ...|...|++++|+|++.+|++|+.||.|++||++.. . .
T Consensus 146 wd~~~~~~~~---~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~----------------~--- 197 (383)
T 3ei3_B 146 RDFSGSVIQV---FAK-----TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH-E----------------I--- 197 (383)
T ss_dssp EETTSCEEEE---EEC-----CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC-E----------------E---
T ss_pred EECCCCceEE---Eec-----cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC-E----------------E---
Confidence 9997654322 221 1234578999999999999999999999999998521 1 1
Q ss_pred EEEEEeeccCCeEEEEEccCCC-EEEEEecCCeEEEEecCC----CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQ-HLAVGSDQGYVYLLDTEG----PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V~vwD~~~----~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
..+..|...|++++|+|++. ++++|+.||.|++||+++ +.++... +|...|++++|+|. ++.+|
T Consensus 198 --~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~-----~~~~l 266 (383)
T 3ei3_B 198 --FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPVNAAYFNPT-----DSTKL 266 (383)
T ss_dssp --EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCEEEEEECTT-----TSCEE
T ss_pred --EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCceEEEEEcCC-----CCCEE
Confidence 33445788899999999999 999999999999999997 5555333 57889999999983 48999
Q ss_pred EEEECCCcEEEEECCCCceEEeeeccCCCCC---cceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee
Q 003360 413 VIATKDSSVLVLDSDNGNMLSTNLIHPKKPS---RALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS 489 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~---~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s 489 (826)
++++.|+.|++||+.+++.+..+..|..... ..+...+... ... .. ..+.+++.+ ..+.
T Consensus 267 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~---------------~~-~~~s~dg~~-s~s~ 328 (383)
T 3ei3_B 267 LTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPM-YDL---------------IV-AGRYPDDQL-LLND 328 (383)
T ss_dssp EEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSS-SSE---------------EE-EECBCCTTT-CTTC
T ss_pred EEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCC-CCc---------------eE-EEecCCccc-ccCC
Confidence 9999999999999999887766654432210 0010000000 000 00 011222233 3345
Q ss_pred cCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccC
Q 003360 490 EKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 490 e~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP 548 (826)
++.|+||++. ..+.+..............+.-++.+..|+.. .+|.|++|.+.
T Consensus 329 d~~i~iwd~~-----~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~-sd~~i~iw~~~ 381 (383)
T 3ei3_B 329 KRTIDIYDAN-----SGGLVHQLRDPNAAGIISLNKFSPTGDVLASG-MGFNILIWNRE 381 (383)
T ss_dssp CCCEEEEETT-----TCCEEEEECBTTBCSCCCEEEECTTSSEEEEE-ETTEEEEEECC
T ss_pred CCeEEEEecC-----CCceeeeecCCCCCceEEEEEEecCccEEEEe-cCCcEEEEecC
Confidence 7799999997 33344443321001111111112566677666 59999999864
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=3.7e-24 Score=261.06 Aligned_cols=238 Identities=11% Similarity=0.113 Sum_probs=194.7
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
...+++++.+|.+.+||... ......+..|..+|++++|+|+++.+++++ |+.|++|+....
T Consensus 25 ~~~la~~~~~g~v~iwd~~~-----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 25 EPWVLTTLYSGRVEIWNYET-----------------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp SSEEEEEETTSEEEEEETTT-----------------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred CCEEEEEeCCCEEEEEECCC-----------------CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 35677888899999999755 113345678999999999999999999998 999999986554
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC-ceeeeeecccccccccccCCCCeEEEEEeC-CCCEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP-LFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLV 299 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~La 299 (826)
.......+|.+.|.+ |+|++++|++|+.||+|++||+... .. .. .+..|...|++++|+| ++..|+
T Consensus 88 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~--~~--------~~~~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL--EQ--------TFEGHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE--EE--------EEECCSSCEEEEEEETTEEEEEE
T ss_pred cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE--EE--------EEcCCCCcEEEEEEEcCCCCEEE
Confidence 443333679999998 9999999999999999999999443 31 11 1246778999999999 889999
Q ss_pred EEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc--CCCEEEEEecCCeEEEEecCC
Q 003360 300 SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR--NSQHLAVGSDQGYVYLLDTEG 377 (826)
Q Consensus 300 sgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~~lasGs~dG~V~vwD~~~ 377 (826)
+|+.||.|++||+...... . .....+...|.+++|+| ++.++++|+.||.|++||+.+
T Consensus 158 ~~~~dg~v~vwd~~~~~~~----------------~----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQSTPN----------------F----TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp EEETTSEEEEEETTCSSCS----------------E----EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred EEeCCCeEEEEECCCCcce----------------e----EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999999999999744321 0 11222347799999999 999999999999999999999
Q ss_pred CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 378 PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 378 ~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
+.++.... .|...|+++.|+| ++.+|++++.||.|++||..+++.+..+..+
T Consensus 218 ~~~~~~~~---~~~~~v~~~~~~~------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 218 KSCVATLE---GHMSNVSFAVFHP------TLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp TEEEEEEE---CCSSCEEEEEECS------SSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred CcEEEEEc---CCCCCEEEEEEcC------CCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 98875553 6788999999999 5899999999999999999999988876443
No 72
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=9e-25 Score=236.06 Aligned_cols=220 Identities=16% Similarity=0.085 Sum_probs=164.7
Q ss_pred cccCCCEEEEEEee--CCCeEEEec-CCcEEEeccCCC----------ceeecccccCCccee--eCCC--CCEEEEEEC
Q 003360 189 PFLDSSITAMKLIT--GNSFILSSA-DEDYSLLAKSVP----------PLLDFETKLKDGSQS--HSKV--KNLFITGHS 251 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~--~~~~l~~~~-d~~i~~w~~~~~----------~~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~ 251 (826)
..|...|++++|++ ++..+++++ |+.|++|+.... ....+ ..|.+.|.+ |+|+ +++|++|+.
T Consensus 54 ~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~ 132 (351)
T 3f3f_A 54 RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGN 132 (351)
T ss_dssp ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecC
Confidence 56778899999999 699999988 999999976542 12223 578999988 9999 999999999
Q ss_pred CCcEEEEeCCCCceeeeeecccc---cccccccCCCCeEEEEEeCC---CCEEEEEeCCCcEEEEEeCCCCCccccceEE
Q 003360 252 DGAINFWDVSCPLFLLILSLKQQ---SEKDFSLSGIPLTALYYDGT---SRVLVSGDQSGMVRIFKLKYEPHAIENSFLS 325 (826)
Q Consensus 252 DGtVriWD~s~~~~~~i~~l~~~---~~~~~~~h~~~V~~l~fsp~---~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~ 325 (826)
||+|++||+..........+... .......|...|.+++|+|+ +..|++++.++.+.+|+...+..
T Consensus 133 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~-------- 204 (351)
T 3f3f_A 133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-------- 204 (351)
T ss_dssp TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE--------
T ss_pred CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce--------
Confidence 99999999843321110111000 00011246689999999997 89999999999997777663221
Q ss_pred EeecCCCCeEEEEEEEEeeccCCeEEEEEccCC----CEEEEEecCCeEEEEecCCCeeE--------------------
Q 003360 326 FTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS----QHLAVGSDQGYVYLLDTEGPTVL-------------------- 381 (826)
Q Consensus 326 i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g----~~lasGs~dG~V~vwD~~~~~~l-------------------- 381 (826)
... .....|...|++++|+|++ .+|++|+.||.|++||++.+...
T Consensus 205 --------~~~---~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (351)
T 3f3f_A 205 --------HVA---AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVD 273 (351)
T ss_dssp --------EEE---EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------
T ss_pred --------eee---eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccc
Confidence 011 3334567889999999998 79999999999999999875210
Q ss_pred -----------------------EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 382 -----------------------YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 382 -----------------------~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.......+|...|++++|++ ++.+|++|+.||.|++|+..+++.+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~------~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 274 MDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL------TGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp -----------------CCSEEEEEEEEECTTSSCEEEEEECS------SSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred cccccccccccceeeeecccccccEEEEEecccccEEEEEEcC------CCCEEEEecCCCcEEEEecCcCcchhh
Confidence 01122346889999999999 589999999999999999998876544
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-23 Score=229.73 Aligned_cols=305 Identities=13% Similarity=0.154 Sum_probs=221.1
Q ss_pred CccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEE
Q 003360 181 PKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINF 257 (826)
Q Consensus 181 ~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVri 257 (826)
....+..+..|...|++++|+|+++++++++ |+.|++|+...........+|.+.|.+ |+|++++|++|+.||+|++
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 3445677899999999999999999999988 999999976554444333679999988 9999999999999999999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEeCCCCCccccceEEEeecCCC
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-----GMVRIFKLKYEPHAIENSFLSFTGSKKG 332 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-----g~V~iwd~~~~~~~~~~~~~~i~~s~~~ 332 (826)
||+..... +..+. +...|.+++|+|++.+|++++.+ |.|++||+....... .+.. . ...
T Consensus 101 wd~~~~~~--~~~~~---------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~--~~~~--~-~~~ 164 (369)
T 3zwl_B 101 WDVSNGQC--VATWK---------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH--ELTK--V-SEE 164 (369)
T ss_dssp EETTTCCE--EEEEE---------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC--CEEE--E-CSS
T ss_pred EECCCCcE--EEEee---------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce--eecc--c-ccc
Confidence 99954432 11121 55789999999999999999999 999999998654321 0000 0 011
Q ss_pred CeEEEEEEEEeeccC--CeEEEEEccCCCEEEEEecCCeEEEEecCC-CeeEEeeecccCCCCCeeEEEEeecccCCCCC
Q 003360 333 NSHIIHSVKVMKING--SIISLNMNRNSQHLAVGSDQGYVYLLDTEG-PTVLYQKHIASDISSGIVSLQFETCSLQGFEK 409 (826)
Q Consensus 333 ~~~~~~~~~~~~~~~--~V~~l~~s~~g~~lasGs~dG~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~ 409 (826)
.. .....+.+ .|++++|+|++.+|++|+.||.|++||+++ ...+... ..|...|.+++|++ ++
T Consensus 165 ~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~------~~ 230 (369)
T 3zwl_B 165 PI-----HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI---DLHEKSISDMQFSP------DL 230 (369)
T ss_dssp CS-----EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE---ECCSSCEEEEEECT------TS
T ss_pred ee-----eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE---ecCCCceeEEEECC------CC
Confidence 11 22233344 899999999999999999999999999998 5666444 36788999999999 59
Q ss_pred cEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee
Q 003360 410 NFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS 489 (826)
Q Consensus 410 ~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s 489 (826)
.+|++++.|+.|++||..+++.+..+. ....+..+.+ .+++.++++++
T Consensus 231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~----------------------------~~~~~~l~~~~ 278 (369)
T 3zwl_B 231 TYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVI----------------------------TPLKEFIILGG 278 (369)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEE----------------------------CSSSSEEEEEE
T ss_pred CEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEe----------------------------cCCCceEEEee
Confidence 999999999999999999999888764 1122222222 23344444444
Q ss_pred c-C--------------cEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccc
Q 003360 490 E-K--------------AACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLK 554 (826)
Q Consensus 490 e-~--------------~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~ 554 (826)
. + .+++|++. ..+.+.....+ ...+. .+..++.+..|+....+|.|++|.+.......
T Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~d~~-----~~~~~~~~~~~-~~~v~-~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 279 GQEAKDVTTTSANEGKFEARFYHKI-----FEEEIGRVQGH-FGPLN-TVAISPQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp CCC-------------CEEEEEETT-----TCCEEEEEECC-SSCEE-EEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred cCCCceEEEEecCCCcceeEEEecC-----CCcchhheecc-cCcEE-EEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence 3 3 68999886 33333333322 11111 11112567788889999999999987654433
No 74
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.94 E-value=2.2e-24 Score=233.64 Aligned_cols=287 Identities=12% Similarity=0.110 Sum_probs=213.7
Q ss_pred eeeecccCCCEEEEEEeeC-CCeEEEec-CCcEEEeccCCCc------eeecccccCCccee--eCCCCCEEEEEECCCc
Q 003360 185 MLKMPFLDSSITAMKLITG-NSFILSSA-DEDYSLLAKSVPP------LLDFETKLKDGSQS--HSKVKNLFITGHSDGA 254 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~~~------~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGt 254 (826)
..+|.+|...|++++|+|+ +++|++|+ |++|++|+..... ... ..+|.+.|.+ |+|++++|++|+.||.
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~-l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA-LRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEE-EeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 3458899999999999998 57889988 9999999644321 222 3679999999 9999999999999999
Q ss_pred EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 255 INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 255 VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
|++|+........ . ...+...+..+.+++++..|++|+.|+.+++||......
T Consensus 110 i~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~----------------- 162 (340)
T 4aow_A 110 LRLWDLTTGTTTR--R--------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK----------------- 162 (340)
T ss_dssp EEEEETTTTEEEE--E--------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-----------------
T ss_pred ceEEeecccceee--e--------ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce-----------------
Confidence 9999995554211 1 123556888999999999999999999999999873211
Q ss_pred EEEEEEEEeeccCCeEEEEEccCC--CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 335 HIIHSVKVMKINGSIISLNMNRNS--QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~g--~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
.. .....+...|.+++|++++ .++++|+.|+.|++||+++++++... .+|..+|++++|+| ++.+|
T Consensus 163 ~~---~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~---~~h~~~v~~~~~s~------~~~~l 230 (340)
T 4aow_A 163 YT---VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH---IGHTGYLNTVTVSP------DGSLC 230 (340)
T ss_dssp EE---ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECT------TSSEE
T ss_pred EE---EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe---cCCCCcEEEEEECC------CCCEE
Confidence 10 2233456789999998764 57889999999999999999888554 47889999999998 69999
Q ss_pred EEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCc
Q 003360 413 VIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKA 492 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~ 492 (826)
++|+.|++|++||..+++.+..+..+. .+.++. +.+++.+++.+.++.
T Consensus 231 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~----~v~~~~----------------------------~~~~~~~~~~~~d~~ 278 (340)
T 4aow_A 231 ASGGKDGQAMLWDLNEGKHLYTLDGGD----IINALC----------------------------FSPNRYWLCAATGPS 278 (340)
T ss_dssp EEEETTCEEEEEETTTTEEEEEEECSS----CEEEEE----------------------------ECSSSSEEEEEETTE
T ss_pred EEEeCCCeEEEEEeccCceeeeecCCc----eEEeee----------------------------cCCCCceeeccCCCE
Confidence 999999999999999998887764321 222222 233456888888999
Q ss_pred EEEEeccccccccceeeeeee---------cCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCc
Q 003360 493 ACAYSLSHAVQGVKKVLYKKK---------FHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPEL 550 (826)
Q Consensus 493 irv~sl~~~~~g~~k~~~k~~---------~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L 550 (826)
|+||++.. ...+...+ .. ...+ .++.-++.+..|+....||.|+||.+...
T Consensus 279 i~iwd~~~-----~~~~~~~~~~~~~~~~~~h-~~~v-~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 279 IKIWDLEG-----KIIVDELKQEVISTSSKAE-PPQC-TSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEEEETTT-----TEEEEEECCC-------CC-CCCE-EEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred EEEEECCC-----CeEEEeccccceeeeccCC-CCCE-EEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 99999873 22222111 01 1111 11111266778899999999999987543
No 75
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-25 Score=251.51 Aligned_cols=329 Identities=12% Similarity=0.128 Sum_probs=209.4
Q ss_pred cccccc-ccccccceEEEecCC-CCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEe
Q 003360 4 NVLQSV-YHETKQVTSACWACP-IGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWV 81 (826)
Q Consensus 4 ~~~~~~-~~~~~~i~slcW~~p-~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~ 81 (826)
.+++++ ..|...|++++| +| +|.+||+|+.||.|++||+.+..... ...+...+ .+..+|..+.|+
T Consensus 53 ~~~~~~~~~h~~~V~~~~~-s~~~~~~l~s~s~dg~v~vwd~~~~~~~~------~~~~~~~~-----~h~~~v~~~~~~ 120 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAV-SPGETPYLITGSDQGVIKIWNLKEIIVGE------VYSSSLTY-----DCSSTVTQITMI 120 (437)
T ss_dssp CEEEEECTTTTSCEEEEEE-ECSSSCEEEEEETTSEEEEEEHHHHHTTC------CCSCSEEE-----ECSSCEEEEEEC
T ss_pred eEEeeeccCCCCceEEEEE-CCCCCCEEEEecCCceEEEeECcccccCc------ccceeeec-----cCCCCEEEEEEe
Confidence 344555 556789999999 57 99999999999999999987621000 00001111 245578888776
Q ss_pred eeCCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEec
Q 003360 82 YADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFD 161 (826)
Q Consensus 82 ~~~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d 161 (826)
. ++.++++|+.+. .+.+|.++.. ..+.+.. .. .+. .+
T Consensus 121 ~----~~~~l~s~s~dg----~i~vwd~~~~-----------~~~~~~~-------------------~~--~~~-~i-- 157 (437)
T 3gre_A 121 P----NFDAFAVSSKDG----QIIVLKVNHY-----------QQESEVK-------------------FL--NCE-CI-- 157 (437)
T ss_dssp T----TSSEEEEEETTS----EEEEEEEEEE-----------EETTEEE-------------------EE--EEE-EE--
T ss_pred C----CCCEEEEEeCCC----EEEEEEeccc-----------cCCceee-------------------cc--ccc-ee--
Confidence 4 344455554422 2222222100 0000000 00 000 00
Q ss_pred chhHHHHHhhccCCCCCCCCccceeeecc--cCCCEEEEE--EeeCCCeEEEec-CCcEEEeccCCCce-eeccc-ccCC
Q 003360 162 DCQIERYLLQYQSRSPPSAPKEVMLKMPF--LDSSITAMK--LITGNSFILSSA-DEDYSLLAKSVPPL-LDFET-KLKD 234 (826)
Q Consensus 162 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~Vt~~~--fs~~~~~l~~~~-d~~i~~w~~~~~~~-~~~~~-~h~g 234 (826)
..+.+.. +...+.++. +++++..+++++ |+.|++|+...... ..+.. .|.+
T Consensus 158 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 158 ----------------------RKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp ----------------------EEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred ----------------------EEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 0111112 667788888 457889999988 99999998755433 33322 2889
Q ss_pred ccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC----CCCEEEEEeCCCcEE
Q 003360 235 GSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG----TSRVLVSGDQSGMVR 308 (826)
Q Consensus 235 ~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp----~~~~Lasgs~dg~V~ 308 (826)
.|.+ |+|++++|++|+.||+|++||+..... +..+. ..|..+|++++|+| ++.+|++|+.||.|+
T Consensus 216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-------~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTTRGIIDIWDIRFNVL--IRSWS-------FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEE--EEEEB-------CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE--EEEEe-------cCCCCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 9998 999999999999999999999955442 22222 13557899996665 577999999999999
Q ss_pred EEEeCCCCCc-----cccceEEEeecCCCCeEEEEEEEEe--eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 309 IFKLKYEPHA-----IENSFLSFTGSKKGNSHIIHSVKVM--KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 309 iwd~~~~~~~-----~~~~~~~i~~s~~~~~~~~~~~~~~--~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
+||++++... +...+..+.+++++... ....+. .+...|++++|+ ++.+|++|+.||.|++||+.+++++
T Consensus 287 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 287 IWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL--EELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp EEETTTTEEEEEEESSSSCCCGGGGSCBCSSG--GGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred EEEcCCCcEEEEEEcCCCCCccceeccccccc--ccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 9999865321 11111111222222110 000111 256679999999 7789999999999999999988766
Q ss_pred Eeeec----------------------------------ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 382 YQKHI----------------------------------ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 382 ~~~~~----------------------------------~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
..... ...|...|++++|.+. .++.+|++|+.||.|+||+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~----~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 364 KAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEV----DETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEES----SSSEEEEEEETTSCEEEEC
T ss_pred eEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeecc----CCceEEEEEcCCceEEEeC
Confidence 43331 1127889999999983 1267999999999999995
No 76
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=4.5e-24 Score=228.91 Aligned_cols=226 Identities=11% Similarity=0.066 Sum_probs=168.3
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC-ce
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP-PL 225 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~-~~ 225 (826)
++.++.+|.+.+||..+- .....+..|...+.++ +.++..+++++ ++.+++|..... ..
T Consensus 82 l~sgs~Dg~v~iw~~~~~-----------------~~~~~~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~ 142 (318)
T 4ggc_A 82 LAVGTSSAEVQLWDVQQQ-----------------KRLRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHH 142 (318)
T ss_dssp EEEEETTSEEEEEETTTT-----------------EEEEEEECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCE
T ss_pred EEEEECCCcEEEeecCCc-----------------eeEEEecCccceEEEe--ecCCCEEEEEecCCceEeeecCCCcee
Confidence 345555667777776551 1233456777777664 55678888888 889998854432 22
Q ss_pred eecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE---EEE
Q 003360 226 LDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV---LVS 300 (826)
Q Consensus 226 ~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~---Las 300 (826)
.....+|...+.. +++++++|++|+.||+|++||+..... ..........+...|.+++++|++.. +++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 216 (318)
T 4ggc_A 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG------GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 216 (318)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT------BSCCSEEECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc------cccceeeecccCCceEEEEecCCCCcEEEEEe
Confidence 2223678888888 999999999999999999999943321 00001112346689999999997653 346
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe--cCCeEEEEecCCC
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS--DQGYVYLLDTEGP 378 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs--~dG~V~vwD~~~~ 378 (826)
|+.+++|++||...... .....+...|..+.|++++..+++++ .||.|+|||++++
T Consensus 217 ~~~~~~i~lwd~~~~~~----------------------~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 217 GTSDRHIRIWNVCSGAC----------------------LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp CTTTCEEEEEETTTCCE----------------------EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred cCCCCEEEEEecccccc----------------------cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 77899999999874332 33445677899999999999887755 8999999999999
Q ss_pred eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 379 TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 379 ~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
+++.++ .+|..+|++++|+| |+.+|++|+.|++|+|||+...
T Consensus 275 ~~~~~l---~gH~~~V~~l~~sp------dg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 275 AKVAEL---KGHTSRVLSLTMSP------DGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEE---CCCSSCEEEEEECT------TSSCEEEEETTTEEEEECCSCC
T ss_pred cEEEEE---cCCCCCEEEEEEcC------CCCEEEEEecCCeEEEEECCCC
Confidence 998655 47999999999999 6999999999999999998754
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=2.3e-24 Score=242.55 Aligned_cols=284 Identities=13% Similarity=0.153 Sum_probs=206.9
Q ss_pred ceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEEEcc
Q 003360 16 VTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGA 95 (826)
Q Consensus 16 i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli~gg 95 (826)
+..|.|. + ++.||+|. |++|++||+.++...+. + ....+..+|..|+|+. +|.+
T Consensus 108 ~~~l~wS-~-~n~lAvgl-d~tV~lWd~~tg~~~~~------------~--~~~~~~~~V~sv~fsp----dg~~----- 161 (420)
T 4gga_A 108 LNLVDWS-S-GNVLAVAL-DNSVYLWSASSGDILQL------------L--QMEQPGEYISSVAWIK----EGNY----- 161 (420)
T ss_dssp CBCEEEC-T-TSEEEEEE-TTEEEEEETTTCCEEEE------------E--ECCSTTCCEEEEEECT----TSSE-----
T ss_pred ceeEEEC-C-CCEEEEEe-CCEEEEEECCCCCEEEE------------E--EecCCCCcEEEEEECC----CCCE-----
Confidence 4679995 3 46888885 99999999998621111 1 1122344677777754 2333
Q ss_pred CCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCC
Q 003360 96 SDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSR 175 (826)
Q Consensus 96 ~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~ 175 (826)
+++++.+|.+.+||...-
T Consensus 162 ----------------------------------------------------lasgs~Dg~v~iWd~~~~---------- 179 (420)
T 4gga_A 162 ----------------------------------------------------LAVGTSSAEVQLWDVQQQ---------- 179 (420)
T ss_dssp ----------------------------------------------------EEEEETTSCEEEEETTTT----------
T ss_pred ----------------------------------------------------EEEEECCCeEEEEEcCCC----------
Confidence 344555667778877551
Q ss_pred CCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc-eeecccccCCccee--eCCCCCEEEEEEC
Q 003360 176 SPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP-LLDFETKLKDGSQS--HSKVKNLFITGHS 251 (826)
Q Consensus 176 ~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~-~~~~~~~h~g~V~~--~s~~~~~l~Tgs~ 251 (826)
.....+..|...|.++++ ++..+++++ |+.+++|+..... ......+|...+.. ++++++++++++.
T Consensus 180 -------~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~ 250 (420)
T 4gga_A 180 -------KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN 250 (420)
T ss_dssp -------EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred -------cEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec
Confidence 123446788888888765 578888888 9999999654322 22223678888888 9999999999999
Q ss_pred CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEE--EeCCCcEEEEEeCCCCCccccceEEEee
Q 003360 252 DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVS--GDQSGMVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 252 DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Las--gs~dg~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
||.|++||...... ..........|...|.+++|+|.+ .++++ |+.|++|++||+.++..
T Consensus 251 D~~v~i~~~~~~~~------~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~----------- 313 (420)
T 4gga_A 251 DNLVNVWPSAPGEG------GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----------- 313 (420)
T ss_dssp TSCEEEEESSCCSS------CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE-----------
T ss_pred cccceEEeeccccc------cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc-----------
Confidence 99999999943321 000011234577899999999976 45555 45799999999985432
Q ss_pred cCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe--cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCC
Q 003360 329 SKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS--DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQG 406 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs--~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~ 406 (826)
.........|.++.|++++..+++++ .||.|+|||+.+++++..+ .+|...|++++|+|
T Consensus 314 -----------~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l---~gH~~~V~~l~~sp----- 374 (420)
T 4gga_A 314 -----------LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL---KGHTSRVLSLTMSP----- 374 (420)
T ss_dssp -----------EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE---CCCSSCEEEEEECT-----
T ss_pred -----------ceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE---cCCCCCEEEEEEcC-----
Confidence 33445577899999999999888765 7999999999999988655 48999999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 407 FEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 407 ~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
|+.+|++|+.|++|++||+.......
T Consensus 375 -dg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 375 -DGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp -TSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred -CCCEEEEEecCCeEEEEECCCCCccc
Confidence 69999999999999999998655443
No 78
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.3e-24 Score=237.55 Aligned_cols=330 Identities=12% Similarity=0.098 Sum_probs=222.9
Q ss_pred eEEEeccCccEEEecc----hhHHH-----HHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEE
Q 003360 147 SFLLLGKSGHFYAFDD----CQIER-----YLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYS 216 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~----~~i~~-----~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~ 216 (826)
.+++++.+|.+.+||. ..-.. ....... +.........|...|++++|+|+++++++++ |+.|+
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 133 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH------PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELR 133 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC------CCCCC------CBCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccc------cccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEE
Confidence 7788888999999998 44110 0000000 0000111233678999999999999999988 99999
Q ss_pred EeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccccccc-------ccccCCCCeE
Q 003360 217 LLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEK-------DFSLSGIPLT 287 (826)
Q Consensus 217 ~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~-------~~~~h~~~V~ 287 (826)
+|+........+ ..|.+.|.+ |+|++++|++++.||.|++||+..... +..+...... ....+...|.
T Consensus 134 i~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (425)
T 1r5m_A 134 LWNKTGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV--MQHFELKETGGSSINAENHSGDGSLGV 210 (425)
T ss_dssp EEETTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE--EEEECCC---------------CCCBS
T ss_pred EEeCCCCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE--EEEeeccccCccceeeccccCCcceee
Confidence 998555444444 678999988 999999999999999999999954442 1222211000 0001112289
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC
Q 003360 288 ALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ 367 (826)
Q Consensus 288 ~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d 367 (826)
+++|+|++ .+++++.||.|++||++.+... .....+...|++++|+|++.+|++|+.|
T Consensus 211 ~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~---------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d 268 (425)
T 1r5m_A 211 DVEWVDDD-KFVIPGPKGAIFVYQITEKTPT---------------------GKLIGHHGPISVLEFNDTNKLLLSASDD 268 (425)
T ss_dssp CCEEEETT-EEEEECGGGCEEEEETTCSSCS---------------------EEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCC-EEEEEcCCCeEEEEEcCCCcee---------------------eeeccCCCceEEEEECCCCCEEEEEcCC
Confidence 99999985 5889999999999999854321 2334567889999999999999999999
Q ss_pred CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceE
Q 003360 368 GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALF 447 (826)
Q Consensus 368 G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~ls 447 (826)
|.|++||+++++.+... ..|...|.++.|++ ++ ++++++.|+.|++||..+++.+..+..|.. .+.+
T Consensus 269 ~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~------~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~i~~ 335 (425)
T 1r5m_A 269 GTLRIWHGGNGNSQNCF---YGHSQSIVSASWVG------DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV---PIFA 335 (425)
T ss_dssp SCEEEECSSSBSCSEEE---CCCSSCEEEEEEET------TT-EEEEEETTSEEEEEETTTTEEEEEEECTTC---CEEE
T ss_pred CEEEEEECCCCccceEe---cCCCccEEEEEECC------CC-EEEEEeCCCcEEEEECCCCcEeEecccCCc---cEEE
Confidence 99999999988877544 36788999999998 46 999999999999999999998887654432 2333
Q ss_pred EEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEecccccc------cc---------ceeeee
Q 003360 448 MQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLSHAVQ------GV---------KKVLYK 511 (826)
Q Consensus 448 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~------g~---------~k~~~k 511 (826)
+.+ .+++.++++++ ++.|++|++..... +. ...+..
T Consensus 336 ~~~----------------------------s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (425)
T 1r5m_A 336 GRI----------------------------SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS 387 (425)
T ss_dssp EEE----------------------------CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEE
T ss_pred EEE----------------------------cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhh
Confidence 332 33445555555 56899999973210 00 002333
Q ss_pred eecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccC
Q 003360 512 KKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 512 ~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP 548 (826)
............+.-++.+..|++...+|.|++|.++
T Consensus 388 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 388 YQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred hcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 3222111011111122667788889999999999886
No 79
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.3e-24 Score=242.01 Aligned_cols=229 Identities=10% Similarity=0.086 Sum_probs=175.9
Q ss_pred eeee-cccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCC---Cc-e-eecccccCCccee--eCCCCCEEEEEECCCc
Q 003360 185 MLKM-PFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSV---PP-L-LDFETKLKDGSQS--HSKVKNLFITGHSDGA 254 (826)
Q Consensus 185 ~~~l-~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~---~~-~-~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGt 254 (826)
...+ ..|...|++++|+| +++++++++ |++|++|+... .. . .....+|.+.|.+ |+|++++|++|+.||+
T Consensus 55 ~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~ 134 (437)
T 3gre_A 55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQ 134 (437)
T ss_dssp EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence 3445 77889999999999 999999998 99999996432 11 1 1222368999999 9999999999999999
Q ss_pred EEEEeCC---CCceeeeeecccccccc--ccc--CCCCeEEEE--EeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEE
Q 003360 255 INFWDVS---CPLFLLILSLKQQSEKD--FSL--SGIPLTALY--YDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLS 325 (826)
Q Consensus 255 VriWD~s---~~~~~~i~~l~~~~~~~--~~~--h~~~V~~l~--fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~ 325 (826)
|++||+. .... +..+....... +.. +...+.++. +++++.+|++|+.||.|++||++....
T Consensus 135 i~vwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------- 204 (437)
T 3gre_A 135 IIVLKVNHYQQESE--VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER-------- 204 (437)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE--------
T ss_pred EEEEEeccccCCce--eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee--------
Confidence 9999982 2221 11111111111 112 557788888 568899999999999999999985432
Q ss_pred EeecCCCCeEEEEEEEEee--ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecc
Q 003360 326 FTGSKKGNSHIIHSVKVMK--INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 326 i~~s~~~~~~~~~~~~~~~--~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~ 403 (826)
. ..+.. |.+.|++++|+|++.+|++|+.||+|++||++.+.++.... ..|..+|.+++|.|.
T Consensus 205 ---------~----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~- 268 (437)
T 3gre_A 205 ---------L----QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS--FGDHAPITHVEVCQF- 268 (437)
T ss_dssp ---------E----EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB--CTTCEEEEEEEECTT-
T ss_pred ---------e----EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe--cCCCCceEEEEeccc-
Confidence 1 22222 67899999999999999999999999999999998885543 256779999988874
Q ss_pred cCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCC
Q 003360 404 LQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPK 440 (826)
Q Consensus 404 ~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~ 440 (826)
...++.+|++|+.|+.|++||+.+++++..+..+..
T Consensus 269 -~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 269 -YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE 304 (437)
T ss_dssp -TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred -cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence 222578999999999999999999999988866543
No 80
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.94 E-value=2.5e-23 Score=236.64 Aligned_cols=270 Identities=14% Similarity=0.138 Sum_probs=204.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..++.++.+|.|.+||...- .....+..|...|++++|++++ .+++++ |+.|++|+.....
T Consensus 133 ~~l~sgs~dg~i~vwd~~~~-----------------~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~ 194 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSINK-----------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC 194 (464)
T ss_dssp TEEEEEETTSCEEEEETTTT-----------------EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE
T ss_pred CEEEEEcCCCcEEEEECCCC-----------------cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc
Confidence 46788899999999997651 1344567899999999999988 788887 9999999876544
Q ss_pred eeecccccCCccee--eC--CCCCEEEEEECCCcEEEEeCCCCceeeeeeccc--------c-----cccccccCCCCeE
Q 003360 225 LLDFETKLKDGSQS--HS--KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQ--------Q-----SEKDFSLSGIPLT 287 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s--~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~--------~-----~~~~~~~h~~~V~ 287 (826)
......+|.+.|.+ ++ ++++++++|+.||+|++||+............. . ....+..|...|.
T Consensus 195 ~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 274 (464)
T 3v7d_B 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 274 (464)
T ss_dssp EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEE
T ss_pred EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEE
Confidence 44333679999988 55 688999999999999999994332111000000 0 0112345777888
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC
Q 003360 288 ALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ 367 (826)
Q Consensus 288 ~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d 367 (826)
++ ++++.+|++|+.||.|++||+++... . ..+..|...|++++|+|++.++++|+.|
T Consensus 275 ~~--~~~~~~l~~~~~d~~i~vwd~~~~~~-----------------~----~~~~~~~~~v~~~~~~~~~~~l~sg~~d 331 (464)
T 3v7d_B 275 TV--SGHGNIVVSGSYDNTLIVWDVAQMKC-----------------L----YILSGHTDRIYSTIYDHERKRCISASMD 331 (464)
T ss_dssp EE--EEETTEEEEEETTSCEEEEETTTTEE-----------------E----EEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred EE--cCCCCEEEEEeCCCeEEEEECCCCcE-----------------E----EEecCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 77 57789999999999999999984322 1 3344567889999999999999999999
Q ss_pred CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceE
Q 003360 368 GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALF 447 (826)
Q Consensus 368 G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~ls 447 (826)
|.|++||+++++++.... +|...|.++.|+ +.+|++++.||+|++||..++...... +.......++
T Consensus 332 g~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~--------~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~~~~~ 398 (464)
T 3v7d_B 332 TTIRIWDLENGELMYTLQ---GHTALVGLLRLS--------DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITT 398 (464)
T ss_dssp SCEEEEETTTTEEEEEEC---CCSSCEEEEEEC--------SSEEEEEETTSEEEEEETTTCCEEEEE--ECTTCCCEEE
T ss_pred CcEEEEECCCCcEEEEEe---CCCCcEEEEEEc--------CCEEEEEeCCCcEEEEECCCCceeeee--cCCCCccEEE
Confidence 999999999999886553 788899999986 468999999999999999988766553 2222222222
Q ss_pred EEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 448 MQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 448 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
+ .+++.++++++++.|+||++.
T Consensus 399 ~------------------------------~~~~~~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 399 F------------------------------YVSDNILVSGSENQFNIYNLR 420 (464)
T ss_dssp E------------------------------EECSSEEEEEETTEEEEEETT
T ss_pred E------------------------------EeCCCEEEEecCCeEEEEECC
Confidence 2 234568888889999999997
No 81
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.93 E-value=4.3e-25 Score=243.74 Aligned_cols=245 Identities=13% Similarity=0.063 Sum_probs=182.6
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC--ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP--PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~--~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
...+..+|++++|+|+++++++++ |+.|++|+.... .......+|.+.|.+ |+|++++|++|+.||+|++||+..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 456778999999999999999997 999999976543 222223679999999 999999999999999999999943
Q ss_pred Cc-eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 263 PL-FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 263 ~~-~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.. ..+.. .+..|...|++++|+|++.+|++|+.||.|++||++.+.... .. ..
T Consensus 87 ~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--------------~~----~~ 140 (377)
T 3dwl_C 87 DGTWKQTL--------VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW--------------VS----KH 140 (377)
T ss_dssp --CCCCEE--------ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC--------------CC----EE
T ss_pred CCceeeee--------EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce--------------ee----eE
Confidence 32 11111 124578899999999999999999999999999998543100 00 22
Q ss_pred Eee-ccCCeEEEEEccCCCEEEEEecCCeEEEEecCC------------------CeeEEeeecccCCCCCeeEEEEeec
Q 003360 342 VMK-INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG------------------PTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 342 ~~~-~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~------------------~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
... |...|++++|+|++.+|++|+.||+|++||+.. +.++. . . .|...|.+++|+|
T Consensus 141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~v~~~~~sp- 215 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA--E-Y-PSGGWVHAVGFSP- 215 (377)
T ss_dssp ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE--C-C-CCSSSEEEEEECT-
T ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh--c-c-cCCceEEEEEECC-
Confidence 223 688899999999999999999999999999953 33332 2 2 7889999999999
Q ss_pred ccCCCCCcEEEEEECCCcEEEEECCCCce----EEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCC
Q 003360 403 SLQGFEKNFLVIATKDSSVLVLDSDNGNM----LSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENA 478 (826)
Q Consensus 403 ~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~----i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (826)
++.+|++++.|++|++||..+++. +..+..|. ..+.++.+
T Consensus 216 -----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~---------------------------- 259 (377)
T 3dwl_C 216 -----SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLW---------------------------- 259 (377)
T ss_dssp -----TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEE----------------------------
T ss_pred -----CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC---CceEEEEE----------------------------
Confidence 589999999999999999999887 54443332 22333333
Q ss_pred CCCCCEEEEeecCcEEEEecc
Q 003360 479 VPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 479 ~~~~~~vv~~se~~irv~sl~ 499 (826)
.+++.++++++++.+.+|...
T Consensus 260 s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 260 ANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EETTEEEEEESSSSEEEECCC
T ss_pred cCCCCEEEEEcCCcEEEEEeC
Confidence 334567888888888888875
No 82
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.93 E-value=1.4e-23 Score=232.91 Aligned_cols=300 Identities=13% Similarity=0.090 Sum_probs=212.0
Q ss_pred eeeecccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCCceeec-c------------cccCCccee--eCC-CCCEE
Q 003360 185 MLKMPFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVPPLLDF-E------------TKLKDGSQS--HSK-VKNLF 246 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~~~~~~-~------------~~h~g~V~~--~s~-~~~~l 246 (826)
...+..|...|++++|+| ++.++++++ |+.|++|+......... . .+|.+.|.+ |+| ++++|
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 344678999999999999 999999998 99999997554322211 0 248899988 899 78899
Q ss_pred EEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC---CEEEEEeCCCcEEEEEeCCCCCccccce
Q 003360 247 ITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS---RVLVSGDQSGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 247 ~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~---~~Lasgs~dg~V~iwd~~~~~~~~~~~~ 323 (826)
++|+.||+|++||+...... ..+ .+...+.++.|+|.+ .++++|+.||.|++||++.+...
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~----- 179 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQTA--DVF---------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS----- 179 (408)
T ss_dssp EEEETTSEEEEEETTTTEEE--EEE---------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC-----
T ss_pred EEEeCCCeEEEeeCCCCccc--eec---------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee-----
Confidence 99999999999999655421 111 244689999999854 49999999999999999854331
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEEEecCCeEEEEecCCCe-eEEeee------------cccC
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGSDQGYVYLLDTEGPT-VLYQKH------------IASD 389 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V~vwD~~~~~-~l~~~~------------~~~~ 389 (826)
..+..|.+.|++++|+|++. ++++|+.||.|++||++.+. ++.... ....
T Consensus 180 ----------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
T 4a11_B 180 ----------------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243 (408)
T ss_dssp ----------------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred ----------------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccc
Confidence 23345678899999999998 58999999999999998765 222221 1146
Q ss_pred CCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCC-cceEEEEecCCCCcccCcccccccc
Q 003360 390 ISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPS-RALFMQILNGQDGLARGANLSNVAG 468 (826)
Q Consensus 390 ~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~-~~lsi~~l~~~~~~~~~~~~~~~~~ 468 (826)
|...|.+++|+| ++.+|++++.|+.|++||+.+++....+..+..... ....+..
T Consensus 244 ~~~~v~~~~~~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 299 (408)
T 4a11_B 244 HNGKVNGLCFTS------DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV------------------ 299 (408)
T ss_dssp CSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE------------------
T ss_pred ccCceeEEEEcC------CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE------------------
Confidence 788999999999 599999999999999999998876544322211100 0000000
Q ss_pred ccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccC
Q 003360 469 MNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 548 (826)
Q Consensus 469 ~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP 548 (826)
.......+++++.++.+++|++. ..+.+.....+ ...... +..++.+..|+....+|.|++|.+.
T Consensus 300 --------~~~~~~~~~~~~~~~~i~v~d~~-----~~~~~~~~~~~-~~~v~~-~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 300 --------SCGCSSEFVFVPYGSTIAVYTVY-----SGEQITMLKGH-YKTVDC-CVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp --------CCSSSSCEEEEEETTEEEEEETT-----TCCEEEEECCC-SSCEEE-EEEETTTTEEEEEETTSCEEEEEEC
T ss_pred --------ecCCCceEEEEecCCEEEEEECc-----CCcceeeeccC-CCeEEE-EEEcCCCCEEEEECCCCeEEEEeCC
Confidence 12234568888889999999997 33344443322 111111 1112667788899999999999998
Q ss_pred Ccccccc
Q 003360 549 ELSLLKE 555 (826)
Q Consensus 549 ~L~~l~~ 555 (826)
..+.+..
T Consensus 365 ~~~~~~~ 371 (408)
T 4a11_B 365 LYEPVPD 371 (408)
T ss_dssp C------
T ss_pred CCCccCC
Confidence 8877654
No 83
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.93 E-value=5.6e-24 Score=230.94 Aligned_cols=285 Identities=9% Similarity=0.062 Sum_probs=204.1
Q ss_pred ccccccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCce
Q 003360 10 YHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASR 89 (826)
Q Consensus 10 ~~~~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~ 89 (826)
..|...|++++|. |+|.+|++|+.||.|++||+.++... .+...+ ..+..+|..+.|.. ++
T Consensus 8 ~~h~~~v~~~~~s-~~~~~l~~~~~d~~v~iw~~~~~~~~---------~~~~~~----~~~~~~v~~~~~~~----~~- 68 (342)
T 1yfq_A 8 QAPKDYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAKN---------VDLLQS----LRYKHPLLCCNFID----NT- 68 (342)
T ss_dssp SCCSSCEEEEEEE-GGGTEEEEEETTSEEEEEEEETTTTE---------EEEEEE----EECSSCEEEEEEEE----SS-
T ss_pred cCCCCcEEEEEEc-CCCCEEEEEcCCCeEEEEEeCCCCcc---------ccceee----eecCCceEEEEECC----CC-
Confidence 3567799999995 79999999999999999998775100 000000 02234555555544 12
Q ss_pred EEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCc-eEEEeccCccEEEecc-hhHHH
Q 003360 90 LYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQD-SFLLLGKSGHFYAFDD-CQIER 167 (826)
Q Consensus 90 lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~-~liv~~~~G~l~~~d~-~~i~~ 167 (826)
. .+++++.+|.|++||. ..-
T Consensus 69 --------------------------------------------------------~~~l~~~~~dg~i~~wd~~~~~-- 90 (342)
T 1yfq_A 69 --------------------------------------------------------DLQIYVGTVQGEILKVDLIGSP-- 90 (342)
T ss_dssp --------------------------------------------------------SEEEEEEETTSCEEEECSSSSS--
T ss_pred --------------------------------------------------------CcEEEEEcCCCeEEEEEeccCC--
Confidence 2 3455556677888887 541
Q ss_pred HHhhccCCCCCCCCccceeeecc--cCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC---------CceeecccccCCc
Q 003360 168 YLLQYQSRSPPSAPKEVMLKMPF--LDSSITAMKLITGNSFILSSA-DEDYSLLAKSV---------PPLLDFETKLKDG 235 (826)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~--h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~---------~~~~~~~~~h~g~ 235 (826)
....+.. |...|++++|++ +..+++++ |+.+++|+... ...... ..|.+.
T Consensus 91 ----------------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~ 152 (342)
T 1yfq_A 91 ----------------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-TKVKNK 152 (342)
T ss_dssp ----------------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS-SSSCCC
T ss_pred ----------------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE-EeeCCc
Confidence 1134566 999999999999 99999988 99999996543 222212 338888
Q ss_pred cee--eCCCCCEEEEEECCCcEEEEeCCC-CceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEE
Q 003360 236 SQS--HSKVKNLFITGHSDGAINFWDVSC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFK 311 (826)
Q Consensus 236 V~~--~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd 311 (826)
|.+ |++++ +++|+.||.|++||+.. ..... ... ...|...|++++|+| ++.+|++|+.||.|++|+
T Consensus 153 v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~-~~~-------~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 153 IFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG-TIE-------ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp EEEEEECSSE--EEEEESTTEEEEEESSCCTTCCC-EEE-------ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred eEEEEecCCc--EEEEeCCCeEEEEECCccccccc-eee-------ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 888 88776 99999999999999954 32100 001 124667999999999 999999999999999999
Q ss_pred eCCCCCccccceEEEeecCCCCeEEEEEEEEeec---------cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE
Q 003360 312 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI---------NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 312 ~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~---------~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
++...... ..... ..+..+ ...|++++|+|++.+|++|+.||.|++||+.+++++.
T Consensus 223 ~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 223 FDDQGDDY-----------NSSKR----FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp CCTTCCST-----------TCTTC----EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred EcCCCccc-----------ccccc----eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh
Confidence 98541000 00000 112222 3489999999999999999999999999999999885
Q ss_pred eeecccCC-CCCeeEEEEeecccCCCCCcEEEEEECCCc-EEEEE
Q 003360 383 QKHIASDI-SSGIVSLQFETCSLQGFEKNFLVIATKDSS-VLVLD 425 (826)
Q Consensus 383 ~~~~~~~~-~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~-V~iwd 425 (826)
.. ..| ..+|.+++ + ++.+|++++.||+ .+.+.
T Consensus 288 ~~---~~~h~~~v~~~~--~------~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 288 NF---AKFNEDSVVKIA--C------SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EC---CCCSSSEEEEEE--E------CSSEEEEEEECTHHHHCSS
T ss_pred hh---hcccCCCceEec--C------CCCeEEEEecCCccccccc
Confidence 54 355 88999999 5 6999999999998 54444
No 84
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.8e-23 Score=218.47 Aligned_cols=289 Identities=13% Similarity=0.097 Sum_probs=214.1
Q ss_pred cceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEe
Q 003360 183 EVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWD 259 (826)
Q Consensus 183 ~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD 259 (826)
.....+..|...|++++| +++..+++++ |+.|++|+............|.+.|.+ |+|++++|++|+.||.|++|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 445668899999999999 9999999988 999999987655544444678999988 999999999999999999999
Q ss_pred C-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 260 V-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 260 ~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
+ ....... ...+..|...|++++| ++..|++|+.||.|++||.. . . .
T Consensus 88 ~~~~~~~~~--------~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~--~-----------------~-~-- 135 (313)
T 3odt_A 88 LFATSGEDP--------LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG--S-----------------L-V-- 135 (313)
T ss_dssp TTCCTTSCC---------CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT--E-----------------E-E--
T ss_pred eeecCCCCc--------ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC--c-----------------E-E--
Confidence 9 3322111 1223468889999999 56799999999999999922 1 0 0
Q ss_pred EEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 339 SVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
.....+..+|.+++|+| ++.++++|+.||.|++||. ...+.... ..+...|.++.|++ ++. +++++.
T Consensus 136 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~--~~~~~~i~~~~~~~------~~~-~~~~~~ 203 (313)
T 3odt_A 136 -YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFS--GIHNDVVRHLAVVD------DGH-FISCSN 203 (313)
T ss_dssp -EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEEC--SSCSSCEEEEEEEE------TTE-EEEEET
T ss_pred -EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEe--ccCcccEEEEEEcC------CCe-EEEccC
Confidence 33445678899999988 8999999999999999994 34442232 34788999999999 355 999999
Q ss_pred CCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEe
Q 003360 418 DSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYS 497 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~s 497 (826)
|+.|++||..+++.+..+..|. ..+.++.+ .+++.++..+.++.|++|+
T Consensus 204 dg~i~i~d~~~~~~~~~~~~~~---~~i~~~~~----------------------------~~~~~l~~~~~dg~v~iwd 252 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLRTYEGHE---SFVYCIKL----------------------------LPNGDIVSCGEDRTVRIWS 252 (313)
T ss_dssp TSEEEEEETTTCCEEEEEECCS---SCEEEEEE----------------------------CTTSCEEEEETTSEEEEEC
T ss_pred CCeEEEEECCchhhhhhhhcCC---ceEEEEEE----------------------------ecCCCEEEEecCCEEEEEE
Confidence 9999999999999988875443 23334433 2334466677778999999
Q ss_pred ccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCcccccc
Q 003360 498 LSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKE 555 (826)
Q Consensus 498 l~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~ 555 (826)
+. ..+.+...... ........+ .+.+. +++...+|.|+++.+...+.+.+
T Consensus 253 ~~-----~~~~~~~~~~~-~~~i~~~~~-~~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 253 KE-----NGSLKQVITLP-AISIWSVDC-MSNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp TT-----TCCEEEEEECS-SSCEEEEEE-CTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred CC-----CCceeEEEecc-CceEEEEEE-ccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 97 33344444333 222222112 23344 77788999999999987766655
No 85
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.93 E-value=1.1e-24 Score=235.46 Aligned_cols=213 Identities=9% Similarity=0.087 Sum_probs=158.0
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc---eeecccccCCccee--eCC--CCCEEEEEECCCcEEEE
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP---LLDFETKLKDGSQS--HSK--VKNLFITGHSDGAINFW 258 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~---~~~~~~~h~g~V~~--~s~--~~~~l~Tgs~DGtVriW 258 (826)
.+..|...|++++|+++++.+++++ |++|++|+..... ...+ .+|.+.|.+ |++ ++++|++|+.||+|+||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3578999999999999999999999 9999999765422 2333 689999998 765 48999999999999999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|+.......+.. +..|...|++++|+|+ +.+|++|+.||+|++||++..... ...
T Consensus 87 d~~~~~~~~~~~--------~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~---------------~~~ 143 (316)
T 3bg1_A 87 REENGTWEKSHE--------HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW---------------EVK 143 (316)
T ss_dssp CCSSSCCCEEEE--------ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE---------------EEC
T ss_pred ECCCCcceEEEE--------ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc---------------cee
Confidence 995432112122 2468889999999998 789999999999999999843210 000
Q ss_pred EEEEEEeeccCCeEEEEEccC-----------------CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 337 IHSVKVMKINGSIISLNMNRN-----------------SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~-----------------g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
.....|...|.+++|+|+ +.+|++|+.||+|++||++............+|..+|.+++|
T Consensus 144 ---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~ 220 (316)
T 3bg1_A 144 ---KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 220 (316)
T ss_dssp ---CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEEC
T ss_pred ---eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEe
Confidence 111234567888899887 468999999999999999755211112233578999999999
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+|. .+.++.+|++|+.|++|++|+..+
T Consensus 221 sp~--~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 221 APS--IGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CCC--SSCSCCEEEEEETTCEEEEEECSS
T ss_pred cCC--CCCCCceEEEEcCCCeEEEEEccC
Confidence 993 111237899999999999999876
No 86
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.93 E-value=8.6e-24 Score=234.70 Aligned_cols=245 Identities=15% Similarity=0.182 Sum_probs=189.2
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeC----C---CeEEEec-CCcEEE
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITG----N---SFILSSA-DEDYSL 217 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~----~---~~l~~~~-d~~i~~ 217 (826)
..+++++.+|.|.+||..... . ..+......+..|...|++++|+++ + ..+++++ |+.|++
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~-------~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLD-------N----ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCT-------T----CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred CeEEEEcCCCEEEEEECCCcc-------c----ccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence 567888899999999987621 0 0112345567789999999999999 9 9999988 999999
Q ss_pred eccCCCc------eeeccccc-----CCccee--eC----CCCCE-EEEEECCCcEEEEeCCC-------Cceeeeeecc
Q 003360 218 LAKSVPP------LLDFETKL-----KDGSQS--HS----KVKNL-FITGHSDGAINFWDVSC-------PLFLLILSLK 272 (826)
Q Consensus 218 w~~~~~~------~~~~~~~h-----~g~V~~--~s----~~~~~-l~Tgs~DGtVriWD~s~-------~~~~~i~~l~ 272 (826)
|+..... ...+ ..| .+.|.+ |+ |++++ |++|+.||.|++||+.. ... .
T Consensus 96 w~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~ 168 (397)
T 1sq9_A 96 YRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL------N 168 (397)
T ss_dssp EEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT------C
T ss_pred EEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee------e
Confidence 9755433 3333 556 588888 89 99999 99999999999999943 331 1
Q ss_pred ccccccc-------ccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee-
Q 003360 273 QQSEKDF-------SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK- 344 (826)
Q Consensus 273 ~~~~~~~-------~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~- 344 (826)
......+ ..|...|++++|+|++ +|++|+.||.|++||++.... . ..+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-----------------~----~~~~~~ 226 (397)
T 1sq9_A 169 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP-----------------L----YNFESQ 226 (397)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE-----------------E----EEEECC
T ss_pred ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce-----------------e----EEEecc
Confidence 0001112 3467899999999999 999999999999999984321 1 22233
Q ss_pred --c---cCCeEEEEEccCCCEEEEEecC---CeEEEEecCCCeeEEeeeccc----------CCCCCeeEEEEeecccCC
Q 003360 345 --I---NGSIISLNMNRNSQHLAVGSDQ---GYVYLLDTEGPTVLYQKHIAS----------DISSGIVSLQFETCSLQG 406 (826)
Q Consensus 345 --~---~~~V~~l~~s~~g~~lasGs~d---G~V~vwD~~~~~~l~~~~~~~----------~~~~~V~sl~f~~~~~~~ 406 (826)
| ...|++++|+|++.+|++|+.| |.|++||+++++.+....... .|...|.+++|++
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----- 301 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND----- 301 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-----
T ss_pred ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-----
Confidence 5 7789999999999999999999 999999999998885553100 0788999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 407 FEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 407 ~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
++.+|++++.|+.|++||+.+++.+..+.
T Consensus 302 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 302 -SGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp -SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred -CCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 58999999999999999999999998876
No 87
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.6e-23 Score=230.08 Aligned_cols=211 Identities=11% Similarity=0.166 Sum_probs=170.2
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC--CCceeecccccCCccee--eCCC--CCEEEEEECCCcEEEEe
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS--VPPLLDFETKLKDGSQS--HSKV--KNLFITGHSDGAINFWD 259 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~--~~~~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~DGtVriWD 259 (826)
.+..|...|++++|+|+++++++++ |+.|++|+.. .........+|.+.|.+ |+++ +++|++|+.||+|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 4688999999999999999999998 9999999764 22222223679999988 8877 89999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
+.......+.. +..|...|++++|+|+ +.+|++|+.||.|++||++..... ..
T Consensus 86 ~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--------------~~--- 140 (379)
T 3jrp_A 86 EENGRWSQIAV--------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--------------SP--- 140 (379)
T ss_dssp EETTEEEEEEE--------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC--------------CE---
T ss_pred cCCCceeEeee--------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce--------------ee---
Confidence 95443222222 2357789999999999 999999999999999999854221 01
Q ss_pred EEEEEeeccCCeEEEEEcc-------------CCCEEEEEecCCeEEEEecCCCeeEEe-eecccCCCCCeeEEEEeecc
Q 003360 338 HSVKVMKINGSIISLNMNR-------------NSQHLAVGSDQGYVYLLDTEGPTVLYQ-KHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~-------------~g~~lasGs~dG~V~vwD~~~~~~l~~-~~~~~~~~~~V~sl~f~~~~ 403 (826)
.....+...|++++|+| ++.+|++|+.||.|++||++.+..... ......|..+|.+++|+|
T Consensus 141 --~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-- 216 (379)
T 3jrp_A 141 --IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-- 216 (379)
T ss_dssp --EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC--
T ss_pred --EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC--
Confidence 33445678899999999 699999999999999999987653311 122347889999999999
Q ss_pred cCCCC---CcEEEEEECCCcEEEEECCCCc
Q 003360 404 LQGFE---KNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 404 ~~~~d---~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
+ +.+|++++.||.|++||..++.
T Consensus 217 ----~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 217 ----TVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp ----CCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred ----CCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 5 7899999999999999999875
No 88
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.1e-24 Score=239.69 Aligned_cols=299 Identities=14% Similarity=0.184 Sum_probs=207.6
Q ss_pred CCEEEEEEeeCCC-eEEEe----------c-CCcEEEeccCCCce--eecccccCCccee--eCCCCCEEEEEECCCcEE
Q 003360 193 SSITAMKLITGNS-FILSS----------A-DEDYSLLAKSVPPL--LDFETKLKDGSQS--HSKVKNLFITGHSDGAIN 256 (826)
Q Consensus 193 ~~Vt~~~fs~~~~-~l~~~----------~-d~~i~~w~~~~~~~--~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVr 256 (826)
+.|++++|+|+++ +++++ + |+.|++|+...... ......|.+.|.+ |+|++++|++|+.||+|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 4688899999987 88888 6 88999997654321 1112468889988 999999999999999999
Q ss_pred EEeCCCCc--eeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 257 FWDVSCPL--FLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 257 iWD~s~~~--~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
+||+.... ...+. .+..|...|++++|+|+ +.+|++|+.||.|++||+......... . .
T Consensus 93 vw~~~~~~~~~~~~~--------~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~---------~ 154 (416)
T 2pm9_A 93 LYSTNEANNAINSMA--------RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN-Y---------T 154 (416)
T ss_dssp EECCSSTTSCCCEEE--------ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT-C---------C
T ss_pred Eeecccccccccchh--------hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc-c---------c
Confidence 99995411 00112 23468899999999998 899999999999999999865411000 0 0
Q ss_pred eEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeeccc---CCCCCeeEEEEeecccCCCCC
Q 003360 334 SHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS---DISSGIVSLQFETCSLQGFEK 409 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~---~~~~~V~sl~f~~~~~~~~d~ 409 (826)
...+ .....|...|++++|+|+ +.+|++|+.||.|++||+++++.+....... +|...|.+++|+|. +.
T Consensus 155 ~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~ 227 (416)
T 2pm9_A 155 PLTP--GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK-----NS 227 (416)
T ss_dssp CBCC--CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSS-----CT
T ss_pred cccc--ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCC-----CC
Confidence 0000 112345778999999999 7899999999999999999998886554321 12788999999993 23
Q ss_pred cEEEEEECCC---cEEEEECCCC-ceEEeee-ccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCC-CCC
Q 003360 410 NFLVIATKDS---SVLVLDSDNG-NMLSTNL-IHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVP-KQW 483 (826)
Q Consensus 410 ~~l~sgs~Dg---~V~iwd~~tg-~~i~~~~-~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 483 (826)
.++++++.|+ .|++||++++ ..+..+. .| ...+.++.+ .+ ++.
T Consensus 228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~---~~~v~~~~~----------------------------s~~~~~ 276 (416)
T 2pm9_A 228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGH---QKGILSLDW----------------------------CHQDEH 276 (416)
T ss_dssp TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC---SSCEEEEEE----------------------------CSSCSS
T ss_pred CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc---cCceeEEEe----------------------------CCCCCC
Confidence 6899999999 9999999986 4444432 22 233334333 22 334
Q ss_pred EEEE-eecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCc-eEEEEEEeeceEEEeccCCccccc
Q 003360 484 FVLL-CSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSD-VGLMLLFTSGKFEIRSLPELSLLK 554 (826)
Q Consensus 484 ~vv~-~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~-~~lv~~~~~G~I~i~slP~L~~l~ 554 (826)
++++ +.++.|++|++.. .+.+.....+.... .... -++.+ ..++....+|.|+++.+...+...
T Consensus 277 ~l~s~~~dg~v~~wd~~~-----~~~~~~~~~~~~~v-~~~~-~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 277 LLLSSGRDNTVLLWNPES-----AEQLSQFPARGNWC-FKTK-FAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp CEEEEESSSEEEEECSSS-----CCEEEEEECSSSCC-CCEE-ECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred eEEEEeCCCCEEEeeCCC-----CccceeecCCCCce-EEEE-ECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 4444 4567999999973 33444433221111 1111 11444 677888889999999998876543
No 89
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.92 E-value=1.1e-23 Score=230.20 Aligned_cols=260 Identities=7% Similarity=0.013 Sum_probs=184.8
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeC----CCeEEEec-CCcEEEec
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITG----NSFILSSA-DEDYSLLA 219 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~----~~~l~~~~-d~~i~~w~ 219 (826)
...+++.+..|.+.+||...-... ........+.|...|++++|+++ ++.+++++ |+.|++|+
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d 101 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQGEI------------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN 101 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGGGCE------------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEEC
T ss_pred CceEEEECCCCEEEEEEcCCCcEE------------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEE
Confidence 456788888899999998752100 00111222347789999999999 66888888 99999998
Q ss_pred cCCCceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCC
Q 003360 220 KSVPPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR 296 (826)
Q Consensus 220 ~~~~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~ 296 (826)
...........+|.+.|.+ |+| ++++|++|+.||+|++||+..... +..+. .+..|...|++++|+|++.
T Consensus 102 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-----~~~~~~~~v~~~~~~~~~~ 174 (366)
T 3k26_A 102 PITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL--VAIFG-----GVEGHRDEVLSADYDLLGE 174 (366)
T ss_dssp TTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE--EEEEC-----STTSCSSCEEEEEECTTSS
T ss_pred chhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE--EEEec-----ccccccCceeEEEECCCCC
Confidence 6654444333679999999 999 899999999999999999955442 12221 1135788999999999999
Q ss_pred EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCe-----EEEEE---EEEeeccCCeEEEEEccCCCEEEEEecCC
Q 003360 297 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS-----HIIHS---VKVMKINGSIISLNMNRNSQHLAVGSDQG 368 (826)
Q Consensus 297 ~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~-----~~~~~---~~~~~~~~~V~~l~~s~~g~~lasGs~dG 368 (826)
+|++|+.||.|++||++......... ..+.+++++.. ...+. .....|...|++++|+ +.++++|+.||
T Consensus 175 ~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~ 251 (366)
T 3k26_A 175 KIMSCGMDHSLKLWRINSKRMMNAIK-ESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCEN 251 (366)
T ss_dssp EEEEEETTSCEEEEESCSHHHHHHHH-HHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSS
T ss_pred EEEEecCCCCEEEEECCCCccccccc-eeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCC
Confidence 99999999999999998652210000 00001111100 00000 1222367889999999 67999999999
Q ss_pred eEEEEecCCCeeE-----------EeeecccCCCCCeeEEEEeecccCCCC--CcEEEEEECCCcEEEEECCCCceE
Q 003360 369 YVYLLDTEGPTVL-----------YQKHIASDISSGIVSLQFETCSLQGFE--KNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 369 ~V~vwD~~~~~~l-----------~~~~~~~~~~~~V~sl~f~~~~~~~~d--~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
.|++||++++... ........|...|++++|++ + +.+|++|+.||.|++||+.+++..
T Consensus 252 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM------DFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE------CTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC------CCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 9999999876440 01122246778899999998 5 899999999999999999988643
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.92 E-value=3.9e-23 Score=225.29 Aligned_cols=303 Identities=13% Similarity=0.182 Sum_probs=203.6
Q ss_pred eeeecccCCCEEEEEEeeCCCeEEEec-----CCcEEEeccCCCceeec-ccccCCccee--eCCC---CCEEEEEECCC
Q 003360 185 MLKMPFLDSSITAMKLITGNSFILSSA-----DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSKV---KNLFITGHSDG 253 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~~~l~~~~-----d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~~---~~~l~Tgs~DG 253 (826)
......|...|++++|+|++..+++++ |+.|++|+......... ..+|.+.|.+ |+|+ +++|++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 334567999999999999997766544 78999997665444332 3578999998 9998 69999999999
Q ss_pred cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEE------eCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEe
Q 003360 254 AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY------DGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFT 327 (826)
Q Consensus 254 tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f------sp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~ 327 (826)
.|++||+..... + ...+..|...|++++| +|++.+|++|+.||.|++||++..... +
T Consensus 91 ~i~iwd~~~~~~-~--------~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~----~---- 153 (357)
T 3i2n_A 91 NLHIWNLEAPEM-P--------VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP----V---- 153 (357)
T ss_dssp CEEEECTTSCSS-C--------SEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC----S----
T ss_pred eEEEEeCCCCCc-c--------EEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc----c----
Confidence 999999943320 1 1123468889999965 678999999999999999999865321 0
Q ss_pred ecCCCCeEEEEEEEEeec----cCCeEEEE----EccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 328 GSKKGNSHIIHSVKVMKI----NGSIISLN----MNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 328 ~s~~~~~~~~~~~~~~~~----~~~V~~l~----~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
.....+ ...|.+++ |++++.++++|+.||.|++||++++.+... ..+...|.++.|
T Consensus 154 ------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~v~~~~~ 217 (357)
T 3i2n_A 154 ------------ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE----TNIKNGVCSLEF 217 (357)
T ss_dssp ------------EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE----EECSSCEEEEEE
T ss_pred ------------eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee----cCCCCceEEEEc
Confidence 111112 33688888 789999999999999999999999987643 256789999999
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc--CCCCCcceEEEEecCCCCcccCccccccccccCCCCCCC
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH--PKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKEN 477 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~--~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (826)
+|. ..++.+|++++.||.|++||..+++.+..+... ......+.++.+
T Consensus 218 ~~~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~--------------------------- 267 (357)
T 3i2n_A 218 DRK---DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH--------------------------- 267 (357)
T ss_dssp SCS---SSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE---------------------------
T ss_pred CCC---CCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE---------------------------
Confidence 982 112789999999999999999876654433210 011222333332
Q ss_pred CCCCCC-EEEEe-ecCcEEEEecccccc--------------ccceeeeeeecCCCCceeeEeeeeCCceEEE-EEEeec
Q 003360 478 AVPKQW-FVLLC-SEKAACAYSLSHAVQ--------------GVKKVLYKKKFHSSSCCWASTFYSGSDVGLM-LLFTSG 540 (826)
Q Consensus 478 ~~~~~~-~vv~~-se~~irv~sl~~~~~--------------g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv-~~~~~G 540 (826)
.+++. +++++ .++.|++|++..... +..+.+.....+ ..-... +.-++.+..|+ ....+|
T Consensus 268 -~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~v~~-~~~s~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 268 -LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS-TQPISS-LDWSPDKRGLCVCSSFDQ 344 (357)
T ss_dssp -ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC-SSCEEE-EEECSSSTTEEEEEETTS
T ss_pred -CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC-CCCeeE-EEEcCCCCeEEEEecCCC
Confidence 23333 45544 456899999873210 011233333222 111111 11125566666 678899
Q ss_pred eEEEeccCCcccc
Q 003360 541 KFEIRSLPELSLL 553 (826)
Q Consensus 541 ~I~i~slP~L~~l 553 (826)
.|++|.+..++.|
T Consensus 345 ~i~iw~~~~~~~i 357 (357)
T 3i2n_A 345 TVRVLIVTKLNKI 357 (357)
T ss_dssp EEEEEEECC----
T ss_pred cEEEEECCCcccC
Confidence 9999998877643
No 91
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.92 E-value=1.8e-23 Score=236.39 Aligned_cols=223 Identities=13% Similarity=0.232 Sum_probs=165.4
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~ 225 (826)
.+++++.+|.+.+||..+- .....+..|...|++++|+ +..+++++ |+.|++|+......
T Consensus 185 ~l~sg~~dg~i~vwd~~~~-----------------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~ 245 (435)
T 1p22_A 185 VIITGSSDSTVRVWDVNTG-----------------EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD 245 (435)
T ss_dssp EEEEEETTSCEEEEESSSC-----------------CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSC
T ss_pred EEEEEcCCCeEEEEECCCC-----------------cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCC
Confidence 4456666788888887651 1234467899999999996 45888888 99999997654332
Q ss_pred e---ecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe
Q 003360 226 L---DFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD 302 (826)
Q Consensus 226 ~---~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs 302 (826)
. ....+|.+.|.+...+++++++|+.||+|++||+..... +.. +..|...|.+++|+ +.+|++|+
T Consensus 246 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~--------~~~~~~~v~~~~~~--~~~l~~g~ 313 (435)
T 1p22_A 246 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF--VRT--------LNGHKRGIACLQYR--DRLVVSGS 313 (435)
T ss_dssp CEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE--EEE--------EECCSSCEEEEEEE--TTEEEEEE
T ss_pred ceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcE--EEE--------EcCCCCcEEEEEeC--CCEEEEEe
Confidence 2 234678999988444889999999999999999954442 222 34677899999995 67999999
Q ss_pred CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe---
Q 003360 303 QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT--- 379 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~--- 379 (826)
.||.|++||++++.. . ..+..|...|++++| ++.+|++|+.||.|++||+.++.
T Consensus 314 ~dg~i~iwd~~~~~~-----------------~----~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 370 (435)
T 1p22_A 314 SDNTIRLWDIECGAC-----------------L----RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPR 370 (435)
T ss_dssp TTSCEEEEETTTCCE-----------------E----EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred CCCeEEEEECCCCCE-----------------E----EEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 999999999985432 1 233456788999999 67899999999999999997655
Q ss_pred ------eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 380 ------VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 380 ------~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
++... .+|..+|+++.|. +.+|++|+.||+|++||..++.....
T Consensus 371 ~~~~~~~~~~~---~~h~~~v~~l~~~--------~~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 371 APAGTLCLRTL---VEHSGRVFRLQFD--------EFQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp SCTTTTEEEEE---CCCSSCCCCEEEC--------SSCEEECCSSSEEEEEC---------
T ss_pred ccccchheeec---cCCCCCeEEEEeC--------CCEEEEEeCCCEEEEEECCCCCCccc
Confidence 55333 4788899999992 67799999999999999987655433
No 92
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.92 E-value=3.2e-22 Score=226.57 Aligned_cols=302 Identities=14% Similarity=0.177 Sum_probs=221.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..++.++.+|.+.+||..+. .....+..|...|++++|+ +..+++++ |+.|++|+.....
T Consensus 130 ~~l~sg~~dg~i~vwd~~~~-----------------~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~ 190 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVTG-----------------KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE 190 (445)
T ss_dssp TEEEEEETTSCEEEEETTTC-----------------CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE
T ss_pred CEEEEEECCCcEEEEECCCC-----------------cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc
Confidence 56788899999999998651 1334567899999999997 67888888 9999999866544
Q ss_pred eeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 225 LLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 225 ~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
......+|.+.|.+...+++.+++|+.||+|++||+..... +.. +..|...|++++| ++..|++|+.|
T Consensus 191 ~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~--------~~~~~~~v~~~~~--~~~~l~~~~~d 258 (445)
T 2ovr_B 191 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC--LHV--------LMGHVAAVRCVQY--DGRRVVSGAYD 258 (445)
T ss_dssp EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE--EEE--------EECCSSCEEEEEE--CSSCEEEEETT
T ss_pred EEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE--EEE--------EcCCcccEEEEEE--CCCEEEEEcCC
Confidence 43333679999998444578899999999999999954432 122 2367889999999 77899999999
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
|.|++||++++.. . .....|...|++++| ++.++++|+.||.|++||+++++++...
T Consensus 259 g~i~iwd~~~~~~-----------------~----~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 315 (445)
T 2ovr_B 259 FMVKVWDPETETC-----------------L----HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL 315 (445)
T ss_dssp SCEEEEEGGGTEE-----------------E----EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCcE-----------------e----EEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 9999999974322 1 233356778999999 7889999999999999999999988555
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccc
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLS 464 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~ 464 (826)
. .|...+.++.+. +.++++|+.||.|++||..+++.+.++..+......+.++.+-
T Consensus 316 ~---~~~~~v~~~~~~--------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~------------- 371 (445)
T 2ovr_B 316 T---GHQSLTSGMELK--------DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN------------- 371 (445)
T ss_dssp C---CCCSCEEEEEEE--------TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-------------
T ss_pred c---CCcccEEEEEEe--------CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC-------------
Confidence 3 677888888774 5689999999999999999999998876544444445555431
Q ss_pred ccccccCCCCCCCCCCCCCEEEEe-ecCcEEEEeccccccccceeeeeeec----CCCCceeeEeeeeCCceEEEEEEee
Q 003360 465 NVAGMNKGSPKENAVPKQWFVLLC-SEKAACAYSLSHAVQGVKKVLYKKKF----HSSSCCWASTFYSGSDVGLMLLFTS 539 (826)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~vv~~-se~~irv~sl~~~~~g~~k~~~k~~~----~~~~c~~~~~~~~~~~~~lv~~~~~ 539 (826)
+.+++++ .++.|++|++. ..+.+..... .....++... .++.+..+++...+
T Consensus 372 -----------------~~~l~s~~~dg~v~iwd~~-----~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~la~~~~d 428 (445)
T 2ovr_B 372 -----------------KNFVITSSDDGTVKLWDLK-----TGEFIRNLVTLESGGSGGVVWRIR-ASNTKLVCAVGSRN 428 (445)
T ss_dssp -----------------SSEEEEEETTSEEEEEETT-----TCCEEEEEEECTTGGGTCEEEEEE-ECSSEEEEEEECSS
T ss_pred -----------------CCEEEEEeCCCeEEEEECC-----CCceeeeeeccccCCCCceEEEEE-ecCCEEEEEEcccC
Confidence 1355555 46789999997 3333333310 0012222211 12667777888888
Q ss_pred ce----EEEeccC
Q 003360 540 GK----FEIRSLP 548 (826)
Q Consensus 540 G~----I~i~slP 548 (826)
|. |.++++.
T Consensus 429 g~~~~~l~v~df~ 441 (445)
T 2ovr_B 429 GTEETKLLVLDFD 441 (445)
T ss_dssp SSSCCEEEEEECC
T ss_pred CCCccEEEEEECC
Confidence 87 7777653
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.92 E-value=1.7e-22 Score=225.87 Aligned_cols=293 Identities=14% Similarity=0.151 Sum_probs=205.6
Q ss_pred eeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeec-ccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 186 LKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 186 ~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
+..+.|...+.+..+..++..+++++ |+.|++|+......... ...|.+.|.+ |+|++++|++|+.||.|++||+.
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp EECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 34456666555544555556677766 99999997665444333 3458888988 99999999999999999999994
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.... +.. +..|...|.+++|+ +..|++|+.||.|++||++.... .. ..
T Consensus 165 ~~~~--~~~--------~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~----------------~~----~~ 212 (401)
T 4aez_A 165 SQTK--LRT--------MAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH----------------QI----GT 212 (401)
T ss_dssp TCCE--EEE--------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC----------------EE----EE
T ss_pred CCeE--EEE--------ecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc----------------ee----eE
Confidence 4432 122 23688899999995 57999999999999999983321 11 34
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE--CCC
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT--KDS 419 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs--~Dg 419 (826)
...|.+.|++++|+|++.+|++|+.||.|++||++++..+.... .|..+|.+++|+|. ...++++++ .|+
T Consensus 213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~-----~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT---NHNAAVKAVAWCPW-----QSNLLATGGGTMDK 284 (401)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC---CCSSCCCEEEECTT-----STTEEEEECCTTTC
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec---CCcceEEEEEECCC-----CCCEEEEecCCCCC
Confidence 45678899999999999999999999999999999988885543 68889999999994 245666665 799
Q ss_pred cEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee---cCcEEEE
Q 003360 420 SVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS---EKAACAY 496 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s---e~~irv~ 496 (826)
.|++||..+++.+..+..+ ..+.++. +.+++.++++++ ++.++||
T Consensus 285 ~i~i~d~~~~~~~~~~~~~----~~v~~~~----------------------------~s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 285 QIHFWNAATGARVNTVDAG----SQVTSLI----------------------------WSPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp EEEEEETTTCCEEEEEECS----SCEEEEE----------------------------ECSSSSEEEEEECTTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEeCC----CcEEEEE----------------------------ECCCCCeEEEEeecCCCcEEEE
Confidence 9999999999988876321 2233332 334555666654 7899999
Q ss_pred eccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCcccccc
Q 003360 497 SLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKE 555 (826)
Q Consensus 497 sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~ 555 (826)
++... ..........+.... . .+..++.+..|++...+|.|++|.+.+.+.+..
T Consensus 333 ~~~~~---~~~~~~~~~~h~~~v-~-~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 333 SYSSS---GLTKQVDIPAHDTRV-L-YSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEETT---EEEEEEEEECCSSCC-C-EEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred ecCCc---cceeEEEecCCCCCE-E-EEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 99731 111111111111111 1 111126677888889999999999988776654
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.92 E-value=1.3e-22 Score=228.23 Aligned_cols=270 Identities=14% Similarity=0.135 Sum_probs=205.3
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL 226 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~ 226 (826)
+++++.++.|++||..+- .....+.+..|...|++++|+|+++++++|+ |+.|++|+.......
T Consensus 118 ~lAvgld~tV~lWd~~tg---------------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSG---------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp EEEEEETTEEEEEETTTC---------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEEeCCEEEEEECCCC---------------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence 455556899999998761 1112334567888999999999999999999 999999987654444
Q ss_pred ecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc
Q 003360 227 DFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM 306 (826)
Q Consensus 227 ~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~ 306 (826)
....+|...+.+++.++.+|++|+.|+++++||...... .+. .+..|...+..+.|+|++.++++++.||.
T Consensus 183 ~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~-~~~--------~~~~h~~~~~~~~~~~~g~~l~s~~~D~~ 253 (420)
T 4gga_A 183 RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH-HVA--------TLSGHSQEVCGLRWAPDGRHLASGGNDNL 253 (420)
T ss_dssp EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-EEE--------EEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccce-eeE--------EecccccceeeeeecCCCCeeeeeecccc
Confidence 444789999988777889999999999999999843331 111 23468889999999999999999999999
Q ss_pred EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEE--EecCCeEEEEecCCCeeEEe
Q 003360 307 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAV--GSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 307 V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~las--Gs~dG~V~vwD~~~~~~l~~ 383 (826)
|++|+...+.... ... .....+.+.|.+++|+|.+. ++++ |+.||+|++||+.++.++..
T Consensus 254 v~i~~~~~~~~~~-------------~~~----~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 254 VNVWPSAPGEGGW-------------VPL----QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp EEEEESSCCSSCS-------------CCS----EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred ceEEeeccccccc-------------eee----eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 9999998654311 010 23445678899999999654 4554 45899999999999998855
Q ss_pred eecccCCCCCeeEEEEeecccCCCCCcEEEEEE--CCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCc
Q 003360 384 KHIASDISSGIVSLQFETCSLQGFEKNFLVIAT--KDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGA 461 (826)
Q Consensus 384 ~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs--~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~ 461 (826)
.. +...+.++.|.+ ++..+++++ .|+.|+|||..+++++.++.+|. ..+.++.+
T Consensus 317 ~~----~~~~v~~~~~~~------~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~---~~V~~l~~----------- 372 (420)
T 4gga_A 317 VD----AHSQVCSILWSP------HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT---SRVLSLTM----------- 372 (420)
T ss_dssp EE----CSSCEEEEEEET------TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS---SCEEEEEE-----------
T ss_pred ec----cccceeeeeecC------CCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC---CCEEEEEE-----------
Confidence 53 345789999998 477777765 79999999999999999987764 34455543
Q ss_pred cccccccccCCCCCCCCCCCCCEEEEee-cCcEEEEecc
Q 003360 462 NLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLS 499 (826)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~vv~~s-e~~irv~sl~ 499 (826)
++++.+|+.++ |+.||||++.
T Consensus 373 -----------------spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 373 -----------------SPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp -----------------CTTSSCEEEEETTTEEEEECCS
T ss_pred -----------------cCCCCEEEEEecCCeEEEEECC
Confidence 33445555555 5689999986
No 95
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8e-24 Score=256.39 Aligned_cols=211 Identities=10% Similarity=0.092 Sum_probs=166.3
Q ss_pred cccCCCEEEEEEeeC--CCeEEEec-CCcEEEeccCCCc--eeecccccCCccee--eCCC--CCEEEEEECCCcEEEEe
Q 003360 189 PFLDSSITAMKLITG--NSFILSSA-DEDYSLLAKSVPP--LLDFETKLKDGSQS--HSKV--KNLFITGHSDGAINFWD 259 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~--~~~l~~~~-d~~i~~w~~~~~~--~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~DGtVriWD 259 (826)
..|...|++++|+++ +..+++++ |+.|++|+..... ......+|.+.|.+ |+|+ ++++++|+.||+|++||
T Consensus 50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwd 129 (753)
T 3jro_A 50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129 (753)
T ss_dssp CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEE
Confidence 567788999999988 89999998 9999999765542 22223679999999 9999 99999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeC-------------CCCEEEEEeCCCcEEEEEeCCCCCccccceEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-------------TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-------------~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
+....... ...+..|...|++++|+| ++..|++|+.||.|++||++.+....
T Consensus 130 l~~~~~~~--------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~------- 194 (753)
T 3jro_A 130 FKENGTTS--------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY------- 194 (753)
T ss_dssp CCSSSCCC--------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE-------
T ss_pred eecCCCcc--------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc-------
Confidence 94442111 111246778999999999 58999999999999999998543210
Q ss_pred eecCCCCeEEEEEEEEeeccCCeEEEEEccC---CCEEEEEecCCeEEEEecCCCeeEE--eeecccCCCCCeeEEEEee
Q 003360 327 TGSKKGNSHIIHSVKVMKINGSIISLNMNRN---SQHLAVGSDQGYVYLLDTEGPTVLY--QKHIASDISSGIVSLQFET 401 (826)
Q Consensus 327 ~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~---g~~lasGs~dG~V~vwD~~~~~~l~--~~~~~~~~~~~V~sl~f~~ 401 (826)
... .....|.++|++++|+|+ +.+|++|+.||.|++||++++.... .......|...|++++|+|
T Consensus 195 -------~~~---~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 264 (753)
T 3jro_A 195 -------VLE---STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264 (753)
T ss_dssp -------EEE---EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT
T ss_pred -------eee---eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC
Confidence 110 234457888999999999 8999999999999999998864221 1122245788999999999
Q ss_pred cccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 402 CSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 402 ~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
++.+|++|+.||.|++|+..++.
T Consensus 265 ------dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 265 ------SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ------TTCCEEEECSSSCEECCBCCSSS
T ss_pred ------CCCEEEEEcCCCEEEEEecCCCC
Confidence 59999999999999999998644
No 96
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.9e-24 Score=244.99 Aligned_cols=229 Identities=7% Similarity=-0.012 Sum_probs=153.9
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEE--EEeeCC-CeEEEec-CCcEEEeccCC
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAM--KLITGN-SFILSSA-DEDYSLLAKSV 222 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~--~fs~~~-~~l~~~~-d~~i~~w~~~~ 222 (826)
.+++++.+|.+.+||... .......+..|...|+++ .|++++ ..+++++ |+++++|+...
T Consensus 279 ~lasgs~DgtV~lWD~~~----------------~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~ 342 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTD----------------PEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD 342 (524)
T ss_dssp EEEEEETTSEEEEEETTB----------------CSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred eEEEEeCCCEEEEEECCC----------------CCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence 356667778899999865 111123468899999999 567777 7889988 99999998654
Q ss_pred CceeecccccCC--ccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEE
Q 003360 223 PPLLDFETKLKD--GSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL 298 (826)
Q Consensus 223 ~~~~~~~~~h~g--~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L 298 (826)
........+|.. .|.+ |+|+++.+++++.|++|++||+..... +. .+..|...|++|+|+|++++|
T Consensus 343 ~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~--~~--------~l~gH~~~V~sva~Sp~g~~l 412 (524)
T 2j04_B 343 IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA--VH--------PLVSRETTITAIGVSRLHPMV 412 (524)
T ss_dssp HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC--CE--------EEEECSSCEEEEECCSSCCBC
T ss_pred CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc--ce--------eeecCCCceEEEEeCCCCCeE
Confidence 322211134543 3655 999999999999999999999944331 11 234688999999999999999
Q ss_pred EEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC-C
Q 003360 299 VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE-G 377 (826)
Q Consensus 299 asgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~-~ 377 (826)
++|+.||+|++||+....... ... .........|.+++|+|++..+. .. | .+.+|+.. +
T Consensus 413 ~Sgs~Dgtv~lwd~~~~~~~~------------~~~-----~~~~~~~~~v~~v~~sp~g~~~~-~~-~-~~~~~~~~~~ 472 (524)
T 2j04_B 413 LAGSADGSLIITNAARRLLHG------------IKN-----SSATQKSLRLWKWDYSIKDDKYR-ID-S-SYEVYPLTVN 472 (524)
T ss_dssp EEEETTTEEECCBSCSSTTTC------------C-----------CCCCEEEECBCCSSSCEEE-EC-C-CCCCCC----
T ss_pred EEEECCCEEEEEechHhhccc------------ccc-----CccceeeeEEEEeccCCCCCeEE-cc-C-CceecccccC
Confidence 999999999999986432110 000 00000122477899999998542 22 2 23455443 3
Q ss_pred CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 378 PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 378 ~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+.++.. ..+|..+|.+++|+|. +..+.++++|+.||.|+||++.
T Consensus 473 g~~~~~---l~gh~~~V~~Vafsp~---~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 473 DVSKAK---IDAHGINITCTKWNET---SAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp ------------CCCSCCCEEECCS---TTTTTEEEEECTTSEEEEEECS
T ss_pred Ccceee---ecCCCceEEEEECCCC---CCccHHHHhhccCceEEEEEcc
Confidence 444422 2478899999999993 1114599999999999999987
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.9e-22 Score=225.03 Aligned_cols=216 Identities=11% Similarity=0.059 Sum_probs=167.5
Q ss_pred ecccCCCEEEEEEeeCCCeE-EEec-CCcEEEeccC--CC-ceeecc-cccCCccee--eCCCCCEEEEEECCCcEEEEe
Q 003360 188 MPFLDSSITAMKLITGNSFI-LSSA-DEDYSLLAKS--VP-PLLDFE-TKLKDGSQS--HSKVKNLFITGHSDGAINFWD 259 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l-~~~~-d~~i~~w~~~--~~-~~~~~~-~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD 259 (826)
.+.|...|++++|+|+++.| ++++ |+.|++|+.. .. ....+. ..|...|.+ |+|++++|++|+.||.|++||
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 46788899999999999996 7787 9999999765 33 333331 256788888 999999999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCC---CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT---SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~---~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
+..... .. .....+..|...|++++|+|+ +++|++|+.|++|++||++.+...
T Consensus 178 ~~~~~~-----~~-~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~------------------ 233 (450)
T 2vdu_B 178 INSIPE-----EK-FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV------------------ 233 (450)
T ss_dssp TTSCCC-----SS-CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE------------------
T ss_pred cCCccc-----cc-ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee------------------
Confidence 943321 00 001234578899999999999 999999999999999999854331
Q ss_pred EEEEE-EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc----------------------CCCCC
Q 003360 337 IHSVK-VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS----------------------DISSG 393 (826)
Q Consensus 337 ~~~~~-~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~----------------------~~~~~ 393 (826)
.. ...|.+.|++++|+ ++.+|++|+.||+|+|||+++++++....... .....
T Consensus 234 ---~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 234 ---DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp ---EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred ---eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 12 23567889999999 99999999999999999999999886654321 23457
Q ss_pred eeEEEEeecccCCCCCcEEEEEE-CCCcEEEEEC--CCC---ceEEeeec
Q 003360 394 IVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDS--DNG---NMLSTNLI 437 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~--~tg---~~i~~~~~ 437 (826)
|.++.|.+ ++.+|++++ .|+.|++|++ .++ +.+..+..
T Consensus 310 v~~i~~~~------~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~ 353 (450)
T 2vdu_B 310 VSKIIKSK------NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF 353 (450)
T ss_dssp EEEEEECS------SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC
T ss_pred EEEEEEeC------CCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc
Confidence 89999998 589999998 8999999999 555 45555433
No 98
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.2e-23 Score=240.76 Aligned_cols=226 Identities=8% Similarity=0.044 Sum_probs=169.1
Q ss_pred EEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeC------CCeEEEec-CCcEEEeccC
Q 003360 149 LLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITG------NSFILSSA-DEDYSLLAKS 221 (826)
Q Consensus 149 iv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~------~~~l~~~~-d~~i~~w~~~ 221 (826)
...+.+|.|.+||...- . ........+..|.+.|+.++|+|+ +..|++++ |++|++|+..
T Consensus 177 aS~s~D~tI~iWd~~~~-------~------~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~ 243 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTS-------T------LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII 243 (524)
T ss_dssp -----CEEEEEEEEETT-------T------CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECC
T ss_pred ccCCCCceEEEEEccCC-------C------CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcC
Confidence 34556788999987541 0 001112345677889999999997 56889888 9999999754
Q ss_pred CCc------------eeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeE
Q 003360 222 VPP------------LLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLT 287 (826)
Q Consensus 222 ~~~------------~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~ 287 (826)
... ...+ .+|.+.|.+ |+++ ..|++|+.||+|++||+..... + ...+..|...|+
T Consensus 244 ~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~-~--------~~~~~~H~~~V~ 312 (524)
T 2j04_B 244 DNATDVHVFKMCEKPSLTL-SLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEV-P--------SFYDQVHDSYIL 312 (524)
T ss_dssp CCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSS-C--------SEEEECSSSCEE
T ss_pred CCccccccceeecCceEEE-EcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCC-c--------eEEeecccccEE
Confidence 321 1122 568889988 8875 4899999999999999953321 1 111347889999
Q ss_pred EE--EEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec-c-CCeEEEEEccCCCEEE
Q 003360 288 AL--YYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-N-GSIISLNMNRNSQHLA 362 (826)
Q Consensus 288 ~l--~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-~-~~V~~l~~s~~g~~la 362 (826)
+| +|+|++ .+||+|+.||+|+|||++..... .....+ . ..|.+++|+|++..++
T Consensus 313 sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~---------------------~~~~~~~~~~~v~~v~fsp~~~~l~ 371 (524)
T 2j04_B 313 SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT---------------------KTTVSRFRGSNLVPVVYCPQIYSYI 371 (524)
T ss_dssp EEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH---------------------CEEEEECSCCSCCCEEEETTTTEEE
T ss_pred EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc---------------------cccccccccCcccceEeCCCcCeEE
Confidence 99 578887 89999999999999999843221 011112 2 3588999999999999
Q ss_pred EEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 363 VGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 363 sGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+|+.|++|++||++.+.++.++. +|..+|++++|+| ++.+|++|+.|++|++||...
T Consensus 372 s~~~d~tv~lwd~~~~~~~~~l~---gH~~~V~sva~Sp------~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 372 YSDGASSLRAVPSRAAFAVHPLV---SRETTITAIGVSR------LHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EECSSSEEEEEETTCTTCCEEEE---ECSSCEEEEECCS------SCCBCEEEETTTEEECCBSCS
T ss_pred EeCCCCcEEEEECcccccceeee---cCCCceEEEEeCC------CCCeEEEEECCCEEEEEechH
Confidence 99999999999999988775443 6899999999999 589999999999999999874
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.91 E-value=1e-22 Score=222.49 Aligned_cols=301 Identities=10% Similarity=0.122 Sum_probs=202.2
Q ss_pred cccccccccceEEEecCCC---CCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeee
Q 003360 7 QSVYHETKQVTSACWACPI---GSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYA 83 (826)
Q Consensus 7 ~~~~~~~~~i~slcW~~p~---g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~ 83 (826)
+....|...|++++|. |+ |.+||+|+.||.|++||+.+... .+.. ....+..+|..+.|..
T Consensus 33 ~~~~~h~~~v~~~~~~-~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------~~~~---~~~~h~~~v~~~~~~~- 96 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFS-PPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------TIPK---AQQMHTGPVLDVCWSD- 96 (368)
T ss_dssp ECSSCCSSCEEEEEEC-CTTSSSEEEEEEETTSEEEEEEECTTSC-----------EEEE---EEEECSSCEEEEEECT-
T ss_pred EeccCCCCceEEEEEc-CCCCCceEEEEECCCCcEEEEEcCCCCc-----------eeEE---EeccccCCEEEEEECc-
Confidence 3445578899999995 67 79999999999999999887200 0000 0011233455554432
Q ss_pred CCCCceEEEEccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecch
Q 003360 84 DGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDC 163 (826)
Q Consensus 84 ~~~~g~lli~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~ 163 (826)
+ ...+++++.+|.+.+||..
T Consensus 97 ---~---------------------------------------------------------~~~l~s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 97 ---D---------------------------------------------------------GSKVFTASCDKTAKMWDLS 116 (368)
T ss_dssp ---T---------------------------------------------------------SSEEEEEETTSEEEEEETT
T ss_pred ---C---------------------------------------------------------CCEEEEEcCCCcEEEEEcC
Confidence 1 1344556667788888876
Q ss_pred hHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEE--eeCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeC
Q 003360 164 QIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKL--ITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHS 240 (826)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~f--s~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s 240 (826)
.- ....+..|...|++++| ++++..+++++ |+.+++|+......... ......+.+..
T Consensus 117 ~~------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~ 177 (368)
T 3mmy_A 117 SN------------------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV-LQLPERCYCAD 177 (368)
T ss_dssp TT------------------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE-EECSSCEEEEE
T ss_pred CC------------------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE-EecCCCceEEE
Confidence 51 12335679999999999 88999999988 99999997654333222 12233444444
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE----EEEEeCCCcEEEEEeCCCC
Q 003360 241 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV----LVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 241 ~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~----Lasgs~dg~V~iwd~~~~~ 316 (826)
.....+++++.|+.+++||+..... ....+. ..+...+.++++.++... +++|+.||.|++|+++...
T Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 178 VIYPMAVVATAERGLIVYQLENQPS-EFRRIE-------SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp EETTEEEEEEGGGCEEEEECSSSCE-EEEECC-------CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred ecCCeeEEEeCCCcEEEEEeccccc-hhhhcc-------ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence 4456899999999999999954432 111111 123356677777766554 9999999999999998542
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeE
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 396 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~s 396 (826)
... .+..+......... .....+..+|++++|+|++.+|++|+.||.|++||+.+++++... ..|..+|.+
T Consensus 250 ~~~--~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~ 320 (368)
T 3mmy_A 250 PAK--DNFTFKCHRSNGTN----TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS---EQLDQPISA 320 (368)
T ss_dssp HHH--HSEEEECSEEC--------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC---CCCSSCEEE
T ss_pred ccc--cceeeeeeeccccc----ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe---cCCCCCceE
Confidence 200 01111100000000 111122347999999999999999999999999999999988544 378889999
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
++|+| ++.+|++++.|+..+.|+
T Consensus 321 ~~~s~------~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 321 CCFNH------NGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EEECT------TSSCEEEEECCCSTTCGG
T ss_pred EEECC------CCCeEEEEeccccccccc
Confidence 99999 699999999988554444
No 100
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=5.8e-22 Score=223.82 Aligned_cols=240 Identities=13% Similarity=0.160 Sum_probs=181.9
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCC-eEEEec-CCcEEEeccCCC
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS-FILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~-~l~~~~-d~~i~~w~~~~~ 223 (826)
..+++++.+|.+++||.... .....+.........+..|...|++++|++++. .+++++ |+.|++|+....
T Consensus 142 ~~lat~~~dg~V~vwd~~~~-------~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 214 (430)
T 2xyi_A 142 CVIATKTPSSDVLVFDYTKH-------PSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT 214 (430)
T ss_dssp EEEEEECSSSCEEEEEGGGS-------CSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSC
T ss_pred cEEEEECCCCcEEEEECCCc-------ccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCC
Confidence 45677788999999998651 111111111233456789999999999999998 888888 999999975441
Q ss_pred ----ce---eecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCC-ceeeeeecccccccccccCCCCeEEEEEe
Q 003360 224 ----PL---LDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCP-LFLLILSLKQQSEKDFSLSGIPLTALYYD 292 (826)
Q Consensus 224 ----~~---~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fs 292 (826)
.. .....+|.+.|.+ |+| ++.+|++|+.||.|++||+... ...++. .+..|...|++++|+
T Consensus 215 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~--------~~~~~~~~v~~i~~~ 286 (430)
T 2xyi_A 215 PKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH--------TVDAHTAEVNCLSFN 286 (430)
T ss_dssp CBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSE--------EEECCSSCEEEEEEC
T ss_pred CCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCccee--------EeecCCCCeEEEEeC
Confidence 11 1112578999988 998 7789999999999999999433 111111 224678899999999
Q ss_pred CCCC-EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEEEecCCeE
Q 003360 293 GTSR-VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGSDQGYV 370 (826)
Q Consensus 293 p~~~-~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V 370 (826)
|++. +|++|+.||.|++||++..... . ..+..|...|++++|+|++. +|++|+.||.|
T Consensus 287 p~~~~~l~tg~~dg~v~vwd~~~~~~~---------------~-----~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i 346 (430)
T 2xyi_A 287 PYSEFILATGSADKTVALWDLRNLKLK---------------L-----HSFESHKDEIFQVQWSPHNETILASSGTDRRL 346 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTSC---------------S-----EEEECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCCC---------------e-----EEeecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence 9987 7999999999999999853211 1 33445788999999999985 69999999999
Q ss_pred EEEecCC--------------CeeEEeeecccCCCCCeeEEEEeecccCCCCCc-EEEEEECCCcEEEEECCCC
Q 003360 371 YLLDTEG--------------PTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-FLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 371 ~vwD~~~--------------~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~l~sgs~Dg~V~iwd~~tg 429 (826)
+|||+.. +.+++.. .+|...|++++|+| ++. +|++++.||.|++|++..+
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~p------~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIH---GGHTAKISDFSWNP------NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEEC---CCCSSCEEEEEECS------SSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEeCCCCccccCccccccCCcceEEEc---CCCCCCceEEEECC------CCCCEEEEEECCCCEEEeEcccc
Confidence 9999987 3444332 47888999999999 466 8999999999999998743
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=7.2e-22 Score=213.20 Aligned_cols=228 Identities=10% Similarity=0.033 Sum_probs=167.9
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC----ceeecccccCCccee--eCC--CCCEEEEEECCCcEEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP----PLLDFETKLKDGSQS--HSK--VKNLFITGHSDGAINFW 258 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~----~~~~~~~~h~g~V~~--~s~--~~~~l~Tgs~DGtVriW 258 (826)
+..|...|++++|+|+++++++++ |+.|++|+.... .......+|.+.|.+ |+| ++++|++|+.||+|++|
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 578999999999999999999998 999999975532 122223579999999 888 69999999999999999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|+....... ..........+..|...|++++|+|+ +.+|++|+.||.|++||++.......-..........
T Consensus 87 d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----- 160 (351)
T 3f3f_A 87 EEDPDQEEC-SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS----- 160 (351)
T ss_dssp EECTTSCTT-SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS-----
T ss_pred ecCCCcccc-cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc-----
Confidence 994432100 00000001123467889999999999 9999999999999999998765432111100000000
Q ss_pred EEEEEEeeccCCeEEEEEccC---CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCC----
Q 003360 337 IHSVKVMKINGSIISLNMNRN---SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEK---- 409 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~---g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~---- 409 (826)
.....+...|.+++|+|+ +.++++|+.|+.+.+|+...+...... ...+|..+|++++|+| ++
T Consensus 161 ---~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~~~~~p------~~~~~~ 230 (351)
T 3f3f_A 161 ---IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA-KLPGHKSLIRSISWAP------SIGRWY 230 (351)
T ss_dssp ---CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE-ECCCCCSCEEEEEECC------CSSCSS
T ss_pred ---cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee-ecCCCCcceeEEEECC------CCCCcc
Confidence 111234667999999997 899999999999988888777653222 2347889999999999 45
Q ss_pred cEEEEEECCCcEEEEECCCCce
Q 003360 410 NFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 410 ~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
.+|++|+.||.|++||+.++..
T Consensus 231 ~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp EEEEEEETTSCEEEEEEEECC-
T ss_pred eEEEEEcCCCeEEEEeCCCCcC
Confidence 7999999999999999987643
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.91 E-value=2e-22 Score=227.39 Aligned_cols=225 Identities=13% Similarity=0.175 Sum_probs=164.5
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc------------eeecccccC------------Cccee--eCCC
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP------------LLDFETKLK------------DGSQS--HSKV 242 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~------------~~~~~~~h~------------g~V~~--~s~~ 242 (826)
.|...|++++|+|++.++++|+ |+.|++|+..... ...+ .+|. +.|.+ |+|+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcCC
Confidence 3568999999999999999998 9999999755332 2233 5787 88988 9999
Q ss_pred C--CEEEEEECCCcEEEEeCCCCcee-eeeeccc----------------------------ccccc-cccCCCCeEEEE
Q 003360 243 K--NLFITGHSDGAINFWDVSCPLFL-LILSLKQ----------------------------QSEKD-FSLSGIPLTALY 290 (826)
Q Consensus 243 ~--~~l~Tgs~DGtVriWD~s~~~~~-~i~~l~~----------------------------~~~~~-~~~h~~~V~~l~ 290 (826)
+ .+|++|+.||+|++||+...... ..+.+.. ..... ...|...|++++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 79999999999999998432210 0000000 00001 246889999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCC-CEEEEEecCCe
Q 003360 291 YDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGY 369 (826)
Q Consensus 291 fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~lasGs~dG~ 369 (826)
|+|++.+|++| .||.|++||++.... .+..+...+ .....|...|++++|+|++ .+|++|+.||.
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~----~~~~~~~~~---------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDR----SFNIVDIKP---------ANMEELTEVITAAEFHPNSCNTFVYSSSKGT 250 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEE----EEEEEECCC---------SSGGGCCCCEEEEEECSSCTTEEEEEETTSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCc----eeeeeeccc---------ccccccCcceEEEEECCCCCcEEEEEeCCCe
Confidence 99999999999 899999999973211 000000000 0123467789999999998 99999999999
Q ss_pred EEEEecCCCee----EEeeecccCCCC------------CeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC-CceE
Q 003360 370 VYLLDTEGPTV----LYQKHIASDISS------------GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN-GNML 432 (826)
Q Consensus 370 V~vwD~~~~~~----l~~~~~~~~~~~------------~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t-g~~i 432 (826)
|++||++++.. +..+ ..|.. .|.+++|+| ++.+|++++. +.|++||+.+ ++++
T Consensus 251 i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~------~g~~l~~~~~-~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLF---EEPEDPSNRSFFSEIISSISDVKFSH------SGRYMMTRDY-LSVKVWDLNMENRPV 320 (447)
T ss_dssp EEEEETTTCSSSCTTCEEE---CCC-----CCHHHHHTTCEEEEEECT------TSSEEEEEES-SEEEEEETTCCSSCS
T ss_pred EEEEECcCCccccceeeEe---ccCCCccccccccccCceEEEEEECC------CCCEEEEeeC-CeEEEEeCCCCcccc
Confidence 99999998875 3222 24443 899999999 5999999998 9999999997 7777
Q ss_pred EeeeccC
Q 003360 433 STNLIHP 439 (826)
Q Consensus 433 ~~~~~~~ 439 (826)
.++..|.
T Consensus 321 ~~~~~~~ 327 (447)
T 3dw8_B 321 ETYQVHE 327 (447)
T ss_dssp CCEESCG
T ss_pred ceeeccc
Confidence 7765553
No 103
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.91 E-value=5.6e-22 Score=215.06 Aligned_cols=286 Identities=15% Similarity=0.147 Sum_probs=202.6
Q ss_pred cccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc----eeecccccCCccee--eCCCCC-EEEEEECCCcEEEEeC
Q 003360 189 PFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP----LLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWDV 260 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~----~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD~ 260 (826)
..|...|++++|+|++..+++++ |+.|++|+..... .... .+|.+.|.+ |+|+++ +|++|+.||.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 57899999999999999999988 9999999765433 3333 579999988 999999 9999999999999999
Q ss_pred -CCCceeeeeeccccccccccc--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 261 -SCPLFLLILSLKQQSEKDFSL--SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 261 -s~~~~~~i~~l~~~~~~~~~~--h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
..... . .+.. |...|++++|+| +..|++|+.||.|++||++...... .. . .+..
T Consensus 87 ~~~~~~---~--------~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~----~~~~--- 143 (342)
T 1yfq_A 87 IGSPSF---Q--------ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV---IA-V----KNLN--- 143 (342)
T ss_dssp SSSSSE---E--------ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC---EE-E----EESC---
T ss_pred ccCCce---E--------eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc---cc-c----cCCe---
Confidence 76652 1 1235 888999999999 9999999999999999987410000 00 0 0000
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC-CeeEEeeecccCCCCCeeEEEEee-cccCCCCCcEEEEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG-PTVLYQKHIASDISSGIVSLQFET-CSLQGFEKNFLVIA 415 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~-~~~~~~d~~~l~sg 415 (826)
+....+...|++++|++++ +++|+.||.|++||+++ +...... ....+...|.++.|++ . +.+++++
T Consensus 144 --~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~------~~~l~~~ 212 (342)
T 1yfq_A 144 --SNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTI-EESGLKYQIRDVALLPKE------QEGYACS 212 (342)
T ss_dssp --SSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEE-EECSCSSCEEEEEECSGG------GCEEEEE
T ss_pred --eeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccccee-eecCCCCceeEEEECCCC------CCEEEEE
Confidence 1122357789999999987 99999999999999988 5432111 1236778999999998 5 8899999
Q ss_pred ECCCcEEEEECCCC------ceEEeeeccCCC------CCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCC
Q 003360 416 TKDSSVLVLDSDNG------NMLSTNLIHPKK------PSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQW 483 (826)
Q Consensus 416 s~Dg~V~iwd~~tg------~~i~~~~~~~~~------~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (826)
+.||.|++|+...+ +.+..+..|... ...+.++. +.+++.
T Consensus 213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------------------------~s~~~~ 264 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE----------------------------FSPRHK 264 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEE----------------------------ECTTTC
T ss_pred ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEE----------------------------EcCCCC
Confidence 99999999999876 666666555431 11233332 233444
Q ss_pred EEEEe-ecCcEEEEeccccccccceeeeeeecC-CCCceeeEeeeeCCceEEEEEEeece-EEEec
Q 003360 484 FVLLC-SEKAACAYSLSHAVQGVKKVLYKKKFH-SSSCCWASTFYSGSDVGLMLLFTSGK-FEIRS 546 (826)
Q Consensus 484 ~vv~~-se~~irv~sl~~~~~g~~k~~~k~~~~-~~~c~~~~~~~~~~~~~lv~~~~~G~-I~i~s 546 (826)
+++++ .++.|++|++. ..+.+...... .... ..+. +.+..|+....+|. .+.+.
T Consensus 265 ~l~~~~~dg~i~vwd~~-----~~~~~~~~~~~h~~~v---~~~~-~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 265 FLYTAGSDGIISCWNLQ-----TRKKIKNFAKFNEDSV---VKIA-CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CEEEEETTSCEEEEETT-----TTEEEEECCCCSSSEE---EEEE-ECSSEEEEEEECTHHHHCSS
T ss_pred EEEEecCCceEEEEcCc-----cHhHhhhhhcccCCCc---eEec-CCCCeEEEEecCCccccccc
Confidence 55554 45699999997 33344433221 1111 1111 45667788888887 44443
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.91 E-value=6.3e-23 Score=229.17 Aligned_cols=234 Identities=15% Similarity=0.172 Sum_probs=178.1
Q ss_pred eccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee-CCCeEEEec-CCcEEEeccCCC-----
Q 003360 151 LGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT-GNSFILSSA-DEDYSLLAKSVP----- 223 (826)
Q Consensus 151 ~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~-~~~~l~~~~-d~~i~~w~~~~~----- 223 (826)
.+.+|.+.+||..... . .......+..|...|++++|+| ++..+++++ |+.|++|+....
T Consensus 53 ~~~~g~i~v~~~~~~~------~-------~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTG------R-------VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119 (402)
T ss_dssp CSSSCCEEEEETTCCE------E-------CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred EcCCCEEEEEECccCC------C-------CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence 4668999999975410 0 0011223578999999999999 899999998 999999975543
Q ss_pred ---ceeecccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE
Q 003360 224 ---PLLDFETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 297 (826)
Q Consensus 224 ---~~~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~ 297 (826)
....+ .+|.+.|.+ |+|++ ++|++|+.||+|++||+..... +..+. ...|...|++++|+|++.+
T Consensus 120 ~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~------~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 120 LREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA--VLTLG------PDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp BCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE--EEEEC------TTTCCSCEEEEEECTTSSC
T ss_pred cCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc--cEEEe------cCCCCCceEEEEECCCCCE
Confidence 23333 679999998 99998 6999999999999999955442 22221 0357889999999999999
Q ss_pred EEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE-eeccCC-eEEEEEccCCCEEEEE---ecCCeEEE
Q 003360 298 LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV-MKINGS-IISLNMNRNSQHLAVG---SDQGYVYL 372 (826)
Q Consensus 298 Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~-~~~~~~-V~~l~~s~~g~~lasG---s~dG~V~v 372 (826)
|++|+.||.|++||++.+.. . ... ..|.+. +.+++|+|++.+|++| +.||.|++
T Consensus 191 l~~~~~d~~i~iwd~~~~~~-----------------~----~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~i 249 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRKGTV-----------------V----AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVAL 249 (402)
T ss_dssp EEEEETTSEEEEEETTTTEE-----------------E----EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEE
T ss_pred EEEEecCCcEEEEeCCCCce-----------------e----eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEE
Confidence 99999999999999984322 1 122 234444 8999999999999999 79999999
Q ss_pred EecCCCee-EEeeecccCCCCCeeEEEEeecccCCCCCcEEEE-EECCCcEEEEECCCCce-EEee
Q 003360 373 LDTEGPTV-LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI-ATKDSSVLVLDSDNGNM-LSTN 435 (826)
Q Consensus 373 wD~~~~~~-l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s-gs~Dg~V~iwd~~tg~~-i~~~ 435 (826)
||++++.. +.... ..+...|.++.|++ ++.+|++ |+.|+.|++||..+++. +..+
T Consensus 250 wd~~~~~~~~~~~~--~~~~~~v~~~~~s~------~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l 307 (402)
T 2aq5_A 250 WDTKHLEEPLSLQE--LDTSSGVLLPFFDP------DTNIVYLCGKGDSSIRYFEITSEAPFLHYL 307 (402)
T ss_dssp EETTBCSSCSEEEE--CCCCSSCEEEEEET------TTTEEEEEETTCSCEEEEEECSSTTCEEEE
T ss_pred EcCccccCCceEEe--ccCCCceeEEEEcC------CCCEEEEEEcCCCeEEEEEecCCCcceEee
Confidence 99988764 22222 24667899999999 5888865 55799999999998873 4444
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=2.4e-22 Score=221.00 Aligned_cols=228 Identities=14% Similarity=0.156 Sum_probs=153.4
Q ss_pred EEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCC--cee
Q 003360 149 LLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVP--PLL 226 (826)
Q Consensus 149 iv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~--~~~ 226 (826)
++.+.++.+.+||..+- .....+. |...|.+++++++ .++++.++.+++|+.... .+.
T Consensus 75 ~~~~~d~~v~iWd~~~~-----------------~~~~~~~-~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKK-----------------QDVSRIK-VDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRIT 134 (355)
T ss_dssp EECSSTTEEEEEETTTT-----------------EEEEEEE-CSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSS
T ss_pred EEECCccEEEEEECCCC-----------------cEEEEEE-CCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeE
Confidence 34455568888987651 0112233 5668999998865 455666899999976543 222
Q ss_pred ecccccCCcceeeCCCCCEEEE--EECCCcEEEEeCCCCc-eee----eeeccccc-ccccccCCCCeEEEEEeCCCCEE
Q 003360 227 DFETKLKDGSQSHSKVKNLFIT--GHSDGAINFWDVSCPL-FLL----ILSLKQQS-EKDFSLSGIPLTALYYDGTSRVL 298 (826)
Q Consensus 227 ~~~~~h~g~V~~~s~~~~~l~T--gs~DGtVriWD~s~~~-~~~----i~~l~~~~-~~~~~~h~~~V~~l~fsp~~~~L 298 (826)
.+.. ..++.++++ .+++. |+.||+|++||+.... ... ........ ...+..|..+|++++|+|++.+|
T Consensus 135 ~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l 210 (355)
T 3vu4_A 135 DDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV 210 (355)
T ss_dssp CCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred Eecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Confidence 2211 233333666 56665 6899999999994322 000 00000000 22345788999999999999999
Q ss_pred EEEeCCCc-EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe---eccCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 003360 299 VSGDQSGM-VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM---KINGSIISLNMNRNSQHLAVGSDQGYVYLLD 374 (826)
Q Consensus 299 asgs~dg~-V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~---~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD 374 (826)
++|+.||+ |+|||++++.. +... .|.+.|++++|+|+|.+|++|+.||+|+|||
T Consensus 211 ~s~s~d~~~v~iwd~~~~~~----------------------~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 211 ATCSQDGTIIRVFKTEDGVL----------------------VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEETTCSEEEEEETTTCCE----------------------EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCcE----------------------EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 99999998 99999985433 2222 2788999999999999999999999999999
Q ss_pred cCCCeeEE--------------------eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 375 TEGPTVLY--------------------QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 375 ~~~~~~l~--------------------~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
++.+.... ..........+...++|++ |+.+|++++.||.+++|+...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 269 IFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS------ESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp SSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS------SSEEEEEETTTTEEEEEEEEE
T ss_pred ccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC------CCCEEEEEeCCCeEEEEEEEc
Confidence 97653210 0111112223346688888 689999999999999998764
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.90 E-value=1.9e-22 Score=225.23 Aligned_cols=211 Identities=8% Similarity=0.041 Sum_probs=161.6
Q ss_pred eeeecccCCCEEEEEEeeCC-CeEEEec-CCcEEEeccCCCceeecc--cccCCccee--eCCCCCEEEEEECCCcEEEE
Q 003360 185 MLKMPFLDSSITAMKLITGN-SFILSSA-DEDYSLLAKSVPPLLDFE--TKLKDGSQS--HSKVKNLFITGHSDGAINFW 258 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~~-~~l~~~~-d~~i~~w~~~~~~~~~~~--~~h~g~V~~--~s~~~~~l~Tgs~DGtVriW 258 (826)
...+..|...|++++|+|++ ..+++++ |+.|++|+.......... ..|.+.|.+ |+|++++|++|+.||+|++|
T Consensus 124 ~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 203 (402)
T 2aq5_A 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVI 203 (402)
T ss_dssp SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 34567899999999999998 5888888 999999986654443332 568999988 99999999999999999999
Q ss_pred eCCCCceeeeeecccccccccccCCC-CeEEEEEeCCCCEEEEE---eCCCcEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGI-PLTALYYDGTSRVLVSG---DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~-~V~~l~fsp~~~~Lasg---s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
|+..... +..+. ..|.. .+.++.|+|++.+|++| +.|+.|++||++.....
T Consensus 204 d~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~---------------- 258 (402)
T 2aq5_A 204 EPRKGTV--VAEKD-------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP---------------- 258 (402)
T ss_dssp ETTTTEE--EEEEE-------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC----------------
T ss_pred eCCCCce--eeeec-------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC----------------
Confidence 9955442 22221 24544 48999999999999999 79999999999854321
Q ss_pred EEEEEEEEeeccCCeEEEEEccCCCEEE-EEecCCeEEEEecCCCee-EEeeecccCCCCCeeEEEEeecccCCCCCcEE
Q 003360 335 HIIHSVKVMKINGSIISLNMNRNSQHLA-VGSDQGYVYLLDTEGPTV-LYQKHIASDISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~g~~la-sGs~dG~V~vwD~~~~~~-l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
.. .....+...|.+++|+|++.+|+ +|+.||.|++||+.+++. +..... ..+..+|.+++|+| ++.++
T Consensus 259 ~~---~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~-~~~~~~v~~~~~sp------~~~~~ 328 (402)
T 2aq5_A 259 LS---LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM-FSSKESQRGMGYMP------KRGLE 328 (402)
T ss_dssp SE---EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE-ECCSSCCSEEEECC------GGGSC
T ss_pred ce---EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc-cccCCcccceEEec------ccccc
Confidence 00 22334567799999999999986 566899999999998873 322222 23678999999999 46665
Q ss_pred EEEECCCcEEEEECCCCceE
Q 003360 413 VIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~tg~~i 432 (826)
+ +.++.+++|++.++.+.
T Consensus 329 ~--s~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 329 V--NKCEIARFYKLHERKCE 346 (402)
T ss_dssp G--GGTEEEEEEEEETTEEE
T ss_pred e--ecceeEEEEEcCCCcEE
Confidence 4 46779999999977643
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.90 E-value=2e-21 Score=219.61 Aligned_cols=224 Identities=12% Similarity=0.170 Sum_probs=177.1
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
...+++++.+|.|.+||..+. .....+..|...|++++| ++..+++|+ |+.|++|+....
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~-----------------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTL-----------------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSC-----------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred CCEEEEEeCCCeEEEEeCCCC-----------------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 466788899999999997651 134457889999999988 788999988 999999987654
Q ss_pred ceeecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC
Q 003360 224 PLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 303 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~ 303 (826)
.......+|.+.|.+...++.++++|+.||+|++||+........ ...+..|...|++++| ++.+|++|+.
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL-------RRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp CEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEE-------EEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred cEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCcee-------eeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 444333678999988333457999999999999999944331110 0112467889999999 6789999999
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEe
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
||.|++||++++... .....|...|.+++|+ +.++++|+.||.|++||+++++++..
T Consensus 275 dg~i~vwd~~~~~~~---------------------~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~ 331 (435)
T 1p22_A 275 DRTIKVWNTSTCEFV---------------------RTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV 331 (435)
T ss_dssp TSEEEEEETTTCCEE---------------------EEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCeEEEEECCcCcEE---------------------EEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 999999999854321 2334567889999995 67999999999999999999998855
Q ss_pred eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 384 KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 384 ~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
. .+|...|.++.|. +.+|++|+.||.|++||..++.
T Consensus 332 ~---~~h~~~v~~~~~~--------~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 332 L---EGHEELVRCIRFD--------NKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp E---CCCSSCEEEEECC--------SSEEEEEETTSCEEEEEHHHHT
T ss_pred E---eCCcCcEEEEEec--------CCEEEEEeCCCcEEEEECCCCC
Confidence 5 3788899999982 7889999999999999997665
No 108
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.90 E-value=3.4e-21 Score=206.40 Aligned_cols=270 Identities=13% Similarity=0.126 Sum_probs=202.7
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL 226 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~ 226 (826)
+++++.++.|++||..+- .....+.+..|...|++++|+++++++++|+ |++|++|+.......
T Consensus 38 ~lAvg~D~tV~iWd~~tg---------------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSG---------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp EEEEEETTEEEEEETTTC---------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEEeCCEEEEEECCCC---------------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence 455667899999998661 1112334567888999999999999999999 999999987655544
Q ss_pred ecccccCCcceeeCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc
Q 003360 227 DFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM 306 (826)
Q Consensus 227 ~~~~~h~g~V~~~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~ 306 (826)
....+|...+.++++++.++++|+.++.+++|+...... .+. .+..|...+.++.|++++.+|++++.||+
T Consensus 103 ~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 173 (318)
T 4ggc_A 103 RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH-HVA--------TLSGHSQEVCGLRWAPDGRHLASGGNDNL 173 (318)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-EEE--------EEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEecCccceEEEeecCCCEEEEEecCCceEeeecCCCce-eEE--------EEcCccCceEEEEEcCCCCEEEEEecCcc
Confidence 444678888888777889999999999999999843331 111 12467789999999999999999999999
Q ss_pred EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCE---EEEEecCCeEEEEecCCCeeEEe
Q 003360 307 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQH---LAVGSDQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 307 V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~---lasGs~dG~V~vwD~~~~~~l~~ 383 (826)
|++||++++.... ... .....+.+.|.++++++++.. +++|+.+++|++||.........
T Consensus 174 i~iwd~~~~~~~~-------------~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 174 VNVWPSAPGEGGW-------------VPL----QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp EEEEESSCBTTBS-------------CCS----EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred eeEEECCCCcccc-------------cce----eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence 9999998654321 000 233445778999999987653 34677899999999998887643
Q ss_pred eecccCCCCCeeEEEEeecccCCCCCcEEEEEE--CCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCc
Q 003360 384 KHIASDISSGIVSLQFETCSLQGFEKNFLVIAT--KDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGA 461 (826)
Q Consensus 384 ~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs--~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~ 461 (826)
. .+...+..+.|.+. +..+++++ .|+.|++||..+++++.++.+|.. .+.++.+
T Consensus 237 ~----~~~~~v~~~~~~~~------~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~---~V~~l~~----------- 292 (318)
T 4ggc_A 237 V----DAHSQVCSILWSPH------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS---RVLSLTM----------- 292 (318)
T ss_dssp E----ECSSCEEEEEEETT------TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS---CEEEEEE-----------
T ss_pred c----cceeeeeeeeeccc------ccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC---CEEEEEE-----------
Confidence 3 45667999999984 66666654 799999999999999999876643 3444443
Q ss_pred cccccccccCCCCCCCCCCCCCEEEEe-ecCcEEEEecc
Q 003360 462 NLSNVAGMNKGSPKENAVPKQWFVLLC-SEKAACAYSLS 499 (826)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~vv~~-se~~irv~sl~ 499 (826)
++++.+++.+ .|+.||||++.
T Consensus 293 -----------------spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 293 -----------------SPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp -----------------CTTSSCEEEEETTTEEEEECCS
T ss_pred -----------------cCCCCEEEEEecCCeEEEEECC
Confidence 3344455555 45689999986
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.6e-22 Score=217.28 Aligned_cols=201 Identities=10% Similarity=0.080 Sum_probs=145.3
Q ss_pred cccCCCEEEEEEee--CCCeEEEec-CCcEEEeccCCCceeec-ccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 189 PFLDSSITAMKLIT--GNSFILSSA-DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~--~~~~l~~~~-d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
..|...|++++|+| ++.++++++ |+.+++|+......... ...|...+.+ |+|++.+|++|+.||+|+|||+..
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 35678899999999 999999988 99999998665444333 2345667877 999999999999999999999954
Q ss_pred Cceeeeeeccccccccccc-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSL-SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~-h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.... .. .+.. |..+|++|+|+|++.+|++|+ |+.|++||++....... +. .
T Consensus 202 ~~~~-~~--------~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~--~~---------~------- 253 (343)
T 3lrv_A 202 PDQA-SS--------RFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA--YP---------T------- 253 (343)
T ss_dssp TTSC-CE--------ECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS--SC---------C-------
T ss_pred CCCC-cc--------EEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee--ec---------c-------
Confidence 4320 01 1234 889999999999999999999 55999999986643210 00 0
Q ss_pred EeeccCCe--EEEEEccCCCEEEEEec-CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 342 VMKINGSI--ISLNMNRNSQHLAVGSD-QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 342 ~~~~~~~V--~~l~~s~~g~~lasGs~-dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
+..+...+ .+++|+|+|.+|++|+. |+.|+||++......+.. .++..+.|.+. ..+...+++++.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-------~~~~~~~~~~~---~~~~~~l~~~~~d 323 (343)
T 3lrv_A 254 YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-------DEESALCLQSD---TADFTDMDVVCGD 323 (343)
T ss_dssp CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-------EEEEECCC-------CCCCEEEEEEET
T ss_pred cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-------cCceeEecCcc---ccccceeEEEecC
Confidence 00011112 57999999999999998 999999999766544222 35666777762 1146789999999
Q ss_pred CcEEEEECC
Q 003360 419 SSVLVLDSD 427 (826)
Q Consensus 419 g~V~iwd~~ 427 (826)
+.+.++-..
T Consensus 324 ~~~~~~~~~ 332 (343)
T 3lrv_A 324 GGIAAILKT 332 (343)
T ss_dssp TEEEEEEEC
T ss_pred CceEEEEec
Confidence 999888654
No 110
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.89 E-value=3.4e-21 Score=212.70 Aligned_cols=290 Identities=12% Similarity=0.115 Sum_probs=190.9
Q ss_pred CCCEEEEEEeeCCCeEEEec-CC-------cEEEeccCCCce---------eec-ccccCCcceeeCCCCCEEEEEE---
Q 003360 192 DSSITAMKLITGNSFILSSA-DE-------DYSLLAKSVPPL---------LDF-ETKLKDGSQSHSKVKNLFITGH--- 250 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~-------~i~~w~~~~~~~---------~~~-~~~h~g~V~~~s~~~~~l~Tgs--- 250 (826)
.-||.+++|+|+++.|++|+ +. .|++|+...... ..+ ..+|...|.+++++++.+++|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 34799999999999999976 33 489996432111 001 2456777777777778887764
Q ss_pred --------CCCcEEEEeCC-CC-ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE--eCCCcEEEEEeCCCCCc
Q 003360 251 --------SDGAINFWDVS-CP-LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG--DQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 251 --------~DGtVriWD~s-~~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg--s~dg~V~iwd~~~~~~~ 318 (826)
.|+++|+|++. .. ....+.... ......+...|.+++|+||+++|+++ +.|++|+|||+.+...
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~- 169 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVD---FDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE- 169 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEEC---SSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeec---eeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-
Confidence 57789999983 22 221111111 11122344679999999999988754 4789999999984322
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEE
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 398 (826)
+....+.+.|++|+|+|+|+++++++.++ +++|+..++..+... ....|...|.+++
T Consensus 170 ---------------------~~~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~-~~~~~~~~v~~v~ 226 (365)
T 4h5i_A 170 ---------------------KFEIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARK-TDFDKNWSLSKIN 226 (365)
T ss_dssp ---------------------EEEEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEE-CCCCTTEEEEEEE
T ss_pred ---------------------EEEeCCCCceEEEEEccCCceEEecccee-EEEEEeccCcceeee-ecCCCCCCEEEEE
Confidence 33445778899999999999999999765 566666666655332 2346788999999
Q ss_pred EeecccCCCCCcEEEEEECCC----cEEEEECCCCceEEeeec-cCCCCCcceEEEEecCCCCcccCccccccccccCCC
Q 003360 399 FETCSLQGFEKNFLVIATKDS----SVLVLDSDNGNMLSTNLI-HPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGS 473 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg----~V~iwd~~tg~~i~~~~~-~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~ 473 (826)
|+| ++.++++++.|+ .+++|+...+........ .......+.++.
T Consensus 227 fsp------dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~------------------------ 276 (365)
T 4h5i_A 227 FIA------DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMD------------------------ 276 (365)
T ss_dssp EEE------TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEE------------------------
T ss_pred EcC------CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEE------------------------
Confidence 999 699999999887 688899876653221100 011112223332
Q ss_pred CCCCCCCCCCEEEEee-cCcEEEEeccccccccceeeeee-ecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCC
Q 003360 474 PKENAVPKQWFVLLCS-EKAACAYSLSHAVQGVKKVLYKK-KFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPE 549 (826)
Q Consensus 474 ~~~~~~~~~~~vv~~s-e~~irv~sl~~~~~g~~k~~~k~-~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~ 549 (826)
++|++.++++++ |+.|+||++. ..+.+... +.+ ...+. ++.-++.+..|+....||.|+|+.+|.
T Consensus 277 ----~Spdg~~lasgs~D~~V~iwd~~-----~~~~~~~~~~gH-~~~V~-~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 277 ----VDMKGELAVLASNDNSIALVKLK-----DLSMSKIFKQAH-SFAIT-EVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ----ECTTSCEEEEEETTSCEEEEETT-----TTEEEEEETTSS-SSCEE-EEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ----ECCCCCceEEEcCCCEEEEEECC-----CCcEEEEecCcc-cCCEE-EEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 345556666655 5689999997 33444432 222 11111 111127788999999999999999984
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.4e-21 Score=217.79 Aligned_cols=211 Identities=10% Similarity=0.072 Sum_probs=164.5
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccCCCc---e-eecc---------------------------------------
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKSVPP---L-LDFE--------------------------------------- 229 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~---~-~~~~--------------------------------------- 229 (826)
.++++++|+++|++++++.++.|.+|+..... . ..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 46889999999998777778899999744333 1 1110
Q ss_pred --------------cccCCccee--eCCCCCEE-EEEECCCcEEEEeCC--CCceeeeeecccccccccccCCCCeEEEE
Q 003360 230 --------------TKLKDGSQS--HSKVKNLF-ITGHSDGAINFWDVS--CPLFLLILSLKQQSEKDFSLSGIPLTALY 290 (826)
Q Consensus 230 --------------~~h~g~V~~--~s~~~~~l-~Tgs~DGtVriWD~s--~~~~~~i~~l~~~~~~~~~~h~~~V~~l~ 290 (826)
.+|.+.|.+ |+|++++| ++|+.||+|+|||+. .... +..+.. ..|...|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~--~~~~~~------~~~~~~v~~~~ 156 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV--LKLRKR------FCFSKRPNAIS 156 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC--EEEEEE------EECSSCEEEEE
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce--eeeeec------ccCCCCceEEE
Confidence 134456888 99999986 999999999999996 4432 122220 14567999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC---CCEEEEEecC
Q 003360 291 YDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN---SQHLAVGSDQ 367 (826)
Q Consensus 291 fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~---g~~lasGs~d 367 (826)
|+|++.+|++|+.+|.|++|++....... ... ..+..|.+.|++++|+|+ +.+|++|+.|
T Consensus 157 ~sp~~~~l~~~~~~g~v~~~~~~~~~~~~-------------~~~----~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 219 (450)
T 2vdu_B 157 IAEDDTTVIIADKFGDVYSIDINSIPEEK-------------FTQ----EPILGHVSMLTDVHLIKDSDGHQFIITSDRD 219 (450)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTSCCCSS-------------CCC----CCSEECSSCEEEEEEEECTTSCEEEEEEETT
T ss_pred EcCCCCEEEEEeCCCcEEEEecCCccccc-------------ccc----eeeecccCceEEEEEcCCCCCCcEEEEEcCC
Confidence 99999999999999999999997553310 000 122346788999999999 9999999999
Q ss_pred CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 368 GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 368 G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
|+|++||++++.++... ..+|...|.+++|+ . +.+|++|+.|++|++||+.+|+++..+..
T Consensus 220 ~~i~vwd~~~~~~~~~~--~~~h~~~v~~~~~s-d------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 220 EHIKISHYPQCFIVDKW--LFGHKHFVSSICCG-K------DYLLLSAGGDDKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp SCEEEEEESCTTCEEEE--CCCCSSCEEEEEEC-S------TTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred CcEEEEECCCCceeeee--ecCCCCceEEEEEC-C------CCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence 99999999999877442 35788999999998 4 89999999999999999999998887653
No 112
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.2e-22 Score=240.46 Aligned_cols=211 Identities=11% Similarity=0.166 Sum_probs=167.5
Q ss_pred eecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC--CCceeecccccCCccee--eCCC--CCEEEEEECCCcEEEEe
Q 003360 187 KMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS--VPPLLDFETKLKDGSQS--HSKV--KNLFITGHSDGAINFWD 259 (826)
Q Consensus 187 ~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~--~~~~~~~~~~h~g~V~~--~s~~--~~~l~Tgs~DGtVriWD 259 (826)
.+..|...|++++|+|+++.+++++ |+.|++|+.. .........+|.+.|.+ |+++ +++|++|+.||+|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 3578999999999999999999998 9999999754 22222223679999999 8887 99999999999999999
Q ss_pred CCCCceeeeeecccccccccccCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 260 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 260 ~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~--~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
+.......+.. +..|...|++++|+|+ +..|++|+.||.|++||++..... ..
T Consensus 84 ~~~~~~~~~~~--------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~--------------~~--- 138 (753)
T 3jro_A 84 EENGRWSQIAV--------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--------------SP--- 138 (753)
T ss_dssp EETTEEEEEEE--------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC--------------CC---
T ss_pred CCCCccccccc--------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc--------------ce---
Confidence 95443222222 2467889999999999 999999999999999999854221 01
Q ss_pred EEEEEeeccCCeEEEEEcc-------------CCCEEEEEecCCeEEEEecCCCeeEE-eeecccCCCCCeeEEEEeecc
Q 003360 338 HSVKVMKINGSIISLNMNR-------------NSQHLAVGSDQGYVYLLDTEGPTVLY-QKHIASDISSGIVSLQFETCS 403 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~-------------~g~~lasGs~dG~V~vwD~~~~~~l~-~~~~~~~~~~~V~sl~f~~~~ 403 (826)
.....|...|++++|+| ++.++++|+.||+|++||++++.... ......+|..+|++++|+|
T Consensus 139 --~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-- 214 (753)
T 3jro_A 139 --IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-- 214 (753)
T ss_dssp --EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC--
T ss_pred --eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc--
Confidence 33455678899999999 58999999999999999998874221 1122347889999999999
Q ss_pred cCCCC---CcEEEEEECCCcEEEEECCCCc
Q 003360 404 LQGFE---KNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 404 ~~~~d---~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
+ +.+|++|+.||.|++||..++.
T Consensus 215 ----~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 215 ----TVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ----CCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred ----CCCCCCEEEEEecCCEEEEecCCCCC
Confidence 5 7899999999999999999764
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.89 E-value=8.3e-22 Score=223.26 Aligned_cols=303 Identities=11% Similarity=0.048 Sum_probs=201.3
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeee
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLI 268 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i 268 (826)
...|.+++|+|||+.+++++ |++|+ +...+ ..+ .+|.+.|.+ |+|+| .|+++++|+..+...
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~--~~l-~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~--- 79 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYA--KDI-NCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL--- 79 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCC--SCC-SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS---
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--ccccc--cee-cCCCccEEEEEECCCC-------CcceEEEEeCCCceE---
Confidence 36788999999999999999 99999 43322 222 689999999 99999 677777777654431
Q ss_pred eecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC-
Q 003360 269 LSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING- 347 (826)
Q Consensus 269 ~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~- 347 (826)
+. ..|...|++++|+|++..||+++.||.|++||... . +....++.
T Consensus 80 --~~-------~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-------------------~-----l~~l~~~~~ 126 (588)
T 2j04_A 80 --LN-------SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-------------------M-----LTNLDSKGN 126 (588)
T ss_dssp --ST-------TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-------------------E-----EEECCCSSC
T ss_pred --ee-------cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-------------------e-----eeeccCCCc
Confidence 11 12467899999999999999999999999999541 1 22222333
Q ss_pred ----CeEEEEEccCCCEEEEEecCCeEEEEecCCCee-------EEeeec-ccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 348 ----SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV-------LYQKHI-ASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 348 ----~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~-------l~~~~~-~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
.|.+++|||+|++||+|+.||+|+|||+.++.+ +.+... ..+|...|.+++|+| |+ ++++
T Consensus 127 ~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP------dg--Laas 198 (588)
T 2j04_A 127 LSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE------DV--LVAA 198 (588)
T ss_dssp STTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET------TE--EEEE
T ss_pred cccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC------Cc--EEEE
Confidence 499999999999999999999999999998753 322211 146788999999999 46 8899
Q ss_pred ECCCcEEEEECCCCceE---Eeee-ccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecC
Q 003360 416 TKDSSVLVLDSDNGNML---STNL-IHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK 491 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~~i---~~~~-~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~ 491 (826)
+.|++|++||..++... .++. .|. ..+.++.+. +.++++++++
T Consensus 199 s~D~tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs------------------------------g~~LASa~~~ 245 (588)
T 2j04_A 199 LSNNSVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV------------------------------DYKVVLTCPG 245 (588)
T ss_dssp ETTCCEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE------------------------------TTEEEEECSS
T ss_pred eCCCeEEEEECCCCccccceeeeccccc---CcEEEEEEE------------------------------CCEEEEEeCC
Confidence 99999999999877632 3331 221 223333222 2466777789
Q ss_pred cEEEEeccccccccceeeeeeecCCCCceeeEee-eeCCceEEEEEEeeceEEEeccCC------ccccccc--ccccee
Q 003360 492 AACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTF-YSGSDVGLMLLFTSGKFEIRSLPE------LSLLKET--SIRGFV 562 (826)
Q Consensus 492 ~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~-~~~~~~~lv~~~~~G~I~i~slP~------L~~l~~~--sl~~~~ 562 (826)
.|++|++.. .+....+.. + ..-++...+ .++.+..+++.+.+|. +++.+.. ...+... .+.-|+
T Consensus 246 tIkLWd~~~----~~~~~~~~g-h-~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~ 318 (588)
T 2j04_A 246 YVHKIDLKN----YSISSLKTG-S-LENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWS 318 (588)
T ss_dssp EEEEEETTT----TEEEEEECS-C-CSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTT
T ss_pred eEEEEECCC----CeEEEEEcC-C-CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEE
Confidence 999999873 221122221 2 111122222 1366677888888999 8887642 2222211 111222
Q ss_pred ecCCCC---C-CCcccceeccCCCcEEEEcCC
Q 003360 563 YLTPKP---N-SLSNTLMCSSWDGELIMVNGN 590 (826)
Q Consensus 563 ~~~~~~---~-~~~~~~~~~s~~G~i~~~~g~ 590 (826)
...... + ......+++|+||++++..+.
T Consensus 319 ~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 319 TIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 210000 0 112355789999998776653
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=7.5e-22 Score=215.64 Aligned_cols=229 Identities=11% Similarity=0.062 Sum_probs=165.5
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCC
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSV 222 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~ 222 (826)
+...++.++.+|.+.+||...- . ....+. ...|.++.++|. +++++ |+++++|+...
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~-------~----------~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~ 104 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDS-------K----------TITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN 104 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSS-------S----------CEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT
T ss_pred CCCEEEEECCCCcEEEEECCCC-------c----------EEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC
Confidence 3456788899999999998651 0 111111 345666777777 77877 99999995442
Q ss_pred ---------Cc-eeecccccCCccee--eCC--CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEE
Q 003360 223 ---------PP-LLDFETKLKDGSQS--HSK--VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTA 288 (826)
Q Consensus 223 ---------~~-~~~~~~~h~g~V~~--~s~--~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~ 288 (826)
.. +.....+|.+.|.+ ++| +++++++|+.||+|++||+...... .... ..|...|++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~-------~~~~~~i~~ 175 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY--IVHS-------AKSDVEYSS 175 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE--EEEC-------CCSSCCCCE
T ss_pred ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE--EEEe-------cCCCCceEE
Confidence 12 22334467788888 999 9999999999999999999544421 1111 124467999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee-ccCCeEEEEEccCCCEEEEEecC
Q 003360 289 LYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-INGSIISLNMNRNSQHLAVGSDQ 367 (826)
Q Consensus 289 l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~~~~V~~l~~s~~g~~lasGs~d 367 (826)
++|+|++.+|++|+.||.|++||++++.... ..+.. |.++|++++|+|+|.+|++|++
T Consensus 176 ~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~--------------------~~~~~~h~~~v~~l~fs~~g~~l~s~~~- 234 (343)
T 3lrv_A 176 GVLHKDSLLLALYSPDGILDVYNLSSPDQAS--------------------SRFPVDEEAKIKEVKFADNGYWMVVECD- 234 (343)
T ss_dssp EEECTTSCEEEEECTTSCEEEEESSCTTSCC--------------------EECCCCTTSCEEEEEECTTSSEEEEEES-
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCCCCc--------------------cEEeccCCCCEEEEEEeCCCCEEEEEeC-
Confidence 9999999999999999999999998654310 12233 6889999999999999999994
Q ss_pred CeEEEEecCCCeeEEeeecccCCCCCee--EEEEeecccCCCCCcEEEEEEC-CCcEEEEECCCCc
Q 003360 368 GYVYLLDTEGPTVLYQKHIASDISSGIV--SLQFETCSLQGFEKNFLVIATK-DSSVLVLDSDNGN 430 (826)
Q Consensus 368 G~V~vwD~~~~~~l~~~~~~~~~~~~V~--sl~f~~~~~~~~d~~~l~sgs~-Dg~V~iwd~~tg~ 430 (826)
+.|++||++++..+........+...+. +++|+| ++.+|++++. |+.|++|+..++.
T Consensus 235 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 235 QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD------SGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT------TSSEEEEEETTTTEEEEEEECTTT
T ss_pred CeEEEEEcCCCCcceeecccccccccccceEEEECC------CCCEEEEecCCCCcEEEEEEcccc
Confidence 5999999999877643332222333443 699998 5999999998 9999999987554
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.89 E-value=9.5e-22 Score=222.77 Aligned_cols=198 Identities=15% Similarity=0.147 Sum_probs=153.5
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCC-----ccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKD-----GSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g-----~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
.|.+.|++++|+|+|..+++++ |+.+++|+... .+..+ . |.. .|.+ |+|+|++|++|+.||+|+|||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 4478899999999999999998 99999998544 33333 3 554 4777 99999999999999999999995
Q ss_pred CCce-----eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 262 CPLF-----LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 262 ~~~~-----~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
++.+ ..+..++.. ..+|...|.+++|+|++ +++++.|++|++|++..+... ...
T Consensus 160 ~~~l~~~~~i~l~ti~~~----~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~--------------~~~- 218 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLS----DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ--------------PVS- 218 (588)
T ss_dssp CCTTTCCCCEEEEEEECS----CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC--------------CCE-
T ss_pred CCccccccceeeeeeecc----cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc--------------cce-
Confidence 5431 122333211 13577899999999999 888999999999999854320 000
Q ss_pred EEEEEE-eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE--eecccCCCCCcEEE
Q 003360 337 IHSVKV-MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF--ETCSLQGFEKNFLV 413 (826)
Q Consensus 337 ~~~~~~-~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f--~~~~~~~~d~~~l~ 413 (826)
... ..|...|.+++|+ |+.||+++ +|+|++||+.++.... .. .+|.+.|..+.| ++ |+..|+
T Consensus 219 ---~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~-~~--~gh~~~V~~va~~~s~------d~~~La 283 (588)
T 2j04_A 219 ---RMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISS-LK--TGSLENFHIIPLNHEK------ESTILL 283 (588)
T ss_dssp ---EEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEE-EE--CSCCSCCCEEEETTCS------SCEEEE
T ss_pred ---eeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEE-EE--cCCCceEEEEEeeeCC------CCCEEE
Confidence 111 2456789999999 68899997 6999999999888742 22 269999999999 87 688999
Q ss_pred EEECCCcEEEEECC
Q 003360 414 IATKDSSVLVLDSD 427 (826)
Q Consensus 414 sgs~Dg~V~iwd~~ 427 (826)
++..||+ ++|...
T Consensus 284 ~a~edG~-klw~~d 296 (588)
T 2j04_A 284 MSNKTSY-KVLLED 296 (588)
T ss_dssp ECSSCEE-EEEESS
T ss_pred EEcCCCC-EEEeec
Confidence 9999999 999987
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.88 E-value=7.1e-21 Score=214.87 Aligned_cols=213 Identities=14% Similarity=0.165 Sum_probs=164.1
Q ss_pred eeeecccCCCEEEEEEeeC-CCeEEEec-CCcEEEeccCC-----------CceeecccccCCccee--eCCCCC-EEEE
Q 003360 185 MLKMPFLDSSITAMKLITG-NSFILSSA-DEDYSLLAKSV-----------PPLLDFETKLKDGSQS--HSKVKN-LFIT 248 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~-~~~l~~~~-d~~i~~w~~~~-----------~~~~~~~~~h~g~V~~--~s~~~~-~l~T 248 (826)
......|...|++++|+|+ +..+++++ ++.|++|+... .....+ .+|.+.|.+ |+|++. +|++
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEE
Confidence 3445679999999999997 67888888 99999996542 223333 678888888 999988 9999
Q ss_pred EECCCcEEEEeCCCC-ceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEeCCCCCccccceEEE
Q 003360 249 GHSDGAINFWDVSCP-LFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 249 gs~DGtVriWD~s~~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
|+.||+|++||+... ..... +. ....+..|...|++++|+| ++.+|++++.||.|++||++.....
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~--~~--~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-------- 267 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRV--ID--AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-------- 267 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGE--EE--CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--------
T ss_pred EeCCCeEEEEeCCCCCCCCce--ec--cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--------
Confidence 999999999999442 10000 00 0122346888999999999 6789999999999999999854210
Q ss_pred eecCCCCeEEEEEEEEeeccCCeEEEEEccCCC-EEEEEecCCeEEEEecCCC-eeEEeeecccCCCCCeeEEEEeeccc
Q 003360 327 TGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGSDQGYVYLLDTEGP-TVLYQKHIASDISSGIVSLQFETCSL 404 (826)
Q Consensus 327 ~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~lasGs~dG~V~vwD~~~~-~~l~~~~~~~~~~~~V~sl~f~~~~~ 404 (826)
... .....|...|++++|+|++. ++++|+.||.|++||++.. ..+... ..|..+|++++|+|.
T Consensus 268 ------~~~----~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~---~~h~~~v~~i~~sp~-- 332 (430)
T 2xyi_A 268 ------KPS----HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPH-- 332 (430)
T ss_dssp ------SCS----EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE---ECCSSCEEEEEECSS--
T ss_pred ------cce----eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe---ecCCCCEEEEEECCC--
Confidence 010 23346678899999999987 6899999999999999984 444333 368889999999994
Q ss_pred CCCCCcEEEEEECCCcEEEEECCC
Q 003360 405 QGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 405 ~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+..+|++++.|+.|++||+.+
T Consensus 333 ---~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 333 ---NETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp ---CTTEEEEEETTSCCEEEEGGG
T ss_pred ---CCCEEEEEeCCCcEEEEeCCC
Confidence 235799999999999999986
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.87 E-value=1.1e-20 Score=210.63 Aligned_cols=261 Identities=11% Similarity=0.085 Sum_probs=162.0
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee-----ecccccCCccee--eCC--------CCCEEEEEECCC
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL-----DFETKLKDGSQS--HSK--------VKNLFITGHSDG 253 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~-----~~~~~h~g~V~~--~s~--------~~~~l~Tgs~DG 253 (826)
.|.+.+....+.+++..+++++ |++|++|+....... ....+|++.|.+ |+| ++++|++|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 3444555556667777889988 999999976543221 124789999999 776 789999999999
Q ss_pred cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccccc---------e
Q 003360 254 AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENS---------F 323 (826)
Q Consensus 254 tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~~~---------~ 323 (826)
+|||||+..... +.. +..|..+|.+++|+|++ .+|++|+.||+|++||++++....... .
T Consensus 167 tv~~Wd~~~~~~--~~~--------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~ 236 (393)
T 4gq1_A 167 TLIIWRLTDEGP--ILA--------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL 236 (393)
T ss_dssp EEEEEEEETTEE--EEE--------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred eEEEEECCCCce--eee--------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence 999999943321 111 23567899999999987 489999999999999998764321100 0
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEc-cCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeec
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMN-RNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETC 402 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s-~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~ 402 (826)
........... .....+...|.++.|+ ++|..|++++.|+++++||+..+....... .+...+..+.+.+.
T Consensus 237 ~s~~~~~~~~~-----~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~---~~~~~~~~~~~~~~ 308 (393)
T 4gq1_A 237 LTLNTLPLVNT-----CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS---DSTMKLGPKNLLPN 308 (393)
T ss_dssp EEEESGGGC-----------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCS
T ss_pred Eecccccceee-----eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe---eecCccccEEEccc
Confidence 01111111111 2223456779999986 799999999999999999998776552221 22222222222221
Q ss_pred c--------------cCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccccccc
Q 003360 403 S--------------LQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAG 468 (826)
Q Consensus 403 ~--------------~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~ 468 (826)
. .+..++.++++|+.||+|++||..+++.+.....|.. .+.++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~---~V~sv-------------------- 365 (393)
T 4gq1_A 309 VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM---PIVDF-------------------- 365 (393)
T ss_dssp EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS---CEEEE--------------------
T ss_pred cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC---cEEEE--------------------
Confidence 0 0112456777888999999999999988766544332 23333
Q ss_pred ccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 469 MNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 469 ~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
.|++++.+|++++++.+.+|.|-
T Consensus 366 --------afspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 366 --------CWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp --------EECTTSSEEEEEESSEEEEEEEG
T ss_pred --------EEcCCCCEEEEEeCCCeEEEEEe
Confidence 35678889999999999999886
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.86 E-value=1.2e-19 Score=198.06 Aligned_cols=217 Identities=10% Similarity=0.114 Sum_probs=162.6
Q ss_pred eeeecccCCCEEEEEEeeC---CCeEEEec-CCcEEEeccCC-Ccee-ecccccCCccee--eCCCCCEEEEEECCCcEE
Q 003360 185 MLKMPFLDSSITAMKLITG---NSFILSSA-DEDYSLLAKSV-PPLL-DFETKLKDGSQS--HSKVKNLFITGHSDGAIN 256 (826)
Q Consensus 185 ~~~l~~h~~~Vt~~~fs~~---~~~l~~~~-d~~i~~w~~~~-~~~~-~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVr 256 (826)
...+..|...|++++|+|+ +..+++++ |+.|++|+... .... ....+|.+.|.+ |+|++++|++|+.||+|+
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 3446789999999999999 59999988 99999997654 2222 333679999998 999999999999999999
Q ss_pred EEeCCCCceeeeeecccccccccccCCCCeEEEEE--eCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCe
Q 003360 257 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY--DGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 334 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f--sp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~ 334 (826)
+||+....... +..|...|++++| +|++.+|++|+.||.|++||++.+..
T Consensus 112 iwd~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----------------- 163 (368)
T 3mmy_A 112 MWDLSSNQAIQ-----------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP----------------- 163 (368)
T ss_dssp EEETTTTEEEE-----------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-----------------
T ss_pred EEEcCCCCcee-----------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-----------------
Confidence 99996555211 1357789999999 89999999999999999999985433
Q ss_pred EEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 335 HIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 335 ~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
+.....+..+.++.+.+. .+++++.++.+++||++.....+.. ....+...+.++.+.+.... ....+++
T Consensus 164 -----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 233 (368)
T 3mmy_A 164 -----MMVLQLPERCYCADVIYP--MAVVATAERGLIVYQLENQPSEFRR-IESPLKHQHRCVAIFKDKQN--KPTGFAL 233 (368)
T ss_dssp -----SEEEECSSCEEEEEEETT--EEEEEEGGGCEEEEECSSSCEEEEE-CCCSCSSCEEEEEEEECTTS--CEEEEEE
T ss_pred -----EEEEecCCCceEEEecCC--eeEEEeCCCcEEEEEeccccchhhh-ccccccCCCceEEEcccCCC--CCCeEEE
Confidence 222334556777777754 7899999999999999887655322 22234455666666653111 1334999
Q ss_pred EECCCcEEEEECCCC---ceEEeeeccC
Q 003360 415 ATKDSSVLVLDSDNG---NMLSTNLIHP 439 (826)
Q Consensus 415 gs~Dg~V~iwd~~tg---~~i~~~~~~~ 439 (826)
++.|+.|++|+..++ ..+..+..|.
T Consensus 234 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 234 GSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred ecCCCcEEEEecCCCCccccceeeeeee
Confidence 999999999999977 3444544443
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.86 E-value=6.8e-19 Score=194.97 Aligned_cols=228 Identities=11% Similarity=0.121 Sum_probs=168.1
Q ss_pred eccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeec
Q 003360 151 LGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDF 228 (826)
Q Consensus 151 ~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~ 228 (826)
...+|.|.+||...- .....+..+. .|++++|+|+++.++.++ ++.|.+|+.........
T Consensus 50 ~~~d~~i~v~d~~~~-----------------~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~ 111 (391)
T 1l0q_A 50 NAHSNDVSIIDTATN-----------------NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT 111 (391)
T ss_dssp EGGGTEEEEEETTTT-----------------EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCCeEEEEECCCC-----------------eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE
Confidence 335677888886541 1122233343 899999999999886644 78999998765444333
Q ss_pred ccccCCccee--eCCCCCEE-EEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEE-EEEeCC
Q 003360 229 ETKLKDGSQS--HSKVKNLF-ITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL-VSGDQS 304 (826)
Q Consensus 229 ~~~h~g~V~~--~s~~~~~l-~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L-asgs~d 304 (826)
..+...+.+ |+|+++.| ++++.|+.|++||+..... +..+. ....+.+++|+|+++.| ++++.+
T Consensus 112 -~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~---------~~~~~~~~~~~~dg~~l~~~~~~~ 179 (391)
T 1l0q_A 112 -VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV--INTVS---------VGRSPKGIAVTPDGTKVYVANFDS 179 (391)
T ss_dssp -EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEE---------CCSSEEEEEECTTSSEEEEEETTT
T ss_pred -EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EEEEe---------cCCCcceEEECCCCCEEEEEeCCC
Confidence 233445656 99999966 7888899999999955442 12222 22467999999999877 677889
Q ss_pred CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe---cCCeEEEEecCCCeeE
Q 003360 305 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS---DQGYVYLLDTEGPTVL 381 (826)
Q Consensus 305 g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs---~dG~V~vwD~~~~~~l 381 (826)
+.|++||++++.. .....+...+.+++|+|++.+|++++ .++.|++||+.+++++
T Consensus 180 ~~v~~~d~~~~~~----------------------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 180 MSISVIDTVTNSV----------------------IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp TEEEEEETTTTEE----------------------EEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred CEEEEEECCCCeE----------------------EEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence 9999999984322 33334566789999999999999988 6899999999999887
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEE-EEEECCCcEEEEECCCCceEEeeeccCC
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFL-VIATKDSSVLVLDSDNGNMLSTNLIHPK 440 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l-~sgs~Dg~V~iwd~~tg~~i~~~~~~~~ 440 (826)
..... ...+.++.|++ ++.+| ++++.|+.|++||..+++.+..+..+..
T Consensus 238 ~~~~~----~~~~~~~~~s~------dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 238 ARIPV----GPDPAGIAVTP------DGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp EEEEC----CSSEEEEEECT------TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEec----CCCccEEEEcc------CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 55442 23578899998 57777 5667899999999999999988766544
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.86 E-value=1.4e-20 Score=209.99 Aligned_cols=251 Identities=14% Similarity=0.051 Sum_probs=162.7
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee--------CCCeEEEec-CCcEE
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT--------GNSFILSSA-DEDYS 216 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~--------~~~~l~~~~-d~~i~ 216 (826)
..+..++.++.+.+||...-. .. .......+.+|...|++++|+| +++.|++++ |++|+
T Consensus 102 ~~las~~~d~~v~lw~~~~~~-----~~-------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNET-----II-------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTE-----EE-------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CEEEEEeCCCcEEEEECCCCc-----cc-------eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 345566778999999976510 00 0111224678999999999998 889999998 99999
Q ss_pred EeccCCCceeecccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCCCceee-eee-----------ccc---ccccc
Q 003360 217 LLAKSVPPLLDFETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSCPLFLL-ILS-----------LKQ---QSEKD 278 (826)
Q Consensus 217 ~w~~~~~~~~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~~~~~~-i~~-----------l~~---~~~~~ 278 (826)
+|+...........+|.+.|.+ |+|++ ++|++|+.||+|++||+....... ... ... .....
T Consensus 170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 249 (393)
T 4gq1_A 170 IWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH 249 (393)
T ss_dssp EEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred EEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence 9986443322223678888888 99987 489999999999999994332110 000 000 00011
Q ss_pred cccCCCCeEEEEEe-CCCCEEEEEeCCCcEEEEEeCCCCCccc-----cceEEEeecCCCCeEEEEEEEEeeccCCeEEE
Q 003360 279 FSLSGIPLTALYYD-GTSRVLVSGDQSGMVRIFKLKYEPHAIE-----NSFLSFTGSKKGNSHIIHSVKVMKINGSIISL 352 (826)
Q Consensus 279 ~~~h~~~V~~l~fs-p~~~~Lasgs~dg~V~iwd~~~~~~~~~-----~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l 352 (826)
...|...|.++.|+ |++..|++++.|+++++||+..+..... ..+..+.+.++ .+.......+...
T Consensus 250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 321 (393)
T 4gq1_A 250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPN--------VQGISLFPSLLGA 321 (393)
T ss_dssp --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCS--------EEEECSSCCSSCC
T ss_pred cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccc--------cccccccCcceeE
Confidence 23566889999997 7999999999999999999986543211 11111111111 1112222223333
Q ss_pred EEcc--CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 353 NMNR--NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 353 ~~s~--~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
.|++ ++.++++|+.||+|++||+.++.++... ..|..+|.+++|+| |+++|++++.+| +.+|.+
T Consensus 322 ~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~---~~~~~~V~svafsp------dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 322 CPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP---IQLGMPIVDFCWHQ------DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE---EECSSCEEEEEECT------TSSEEEEEESSE-EEEEEE
T ss_pred EEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe---cCCCCcEEEEEEcC------CCCEEEEEeCCC-eEEEEE
Confidence 4443 4456778899999999999988876433 36778999999999 799999998776 555554
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.86 E-value=9.8e-20 Score=204.71 Aligned_cols=281 Identities=14% Similarity=0.102 Sum_probs=197.1
Q ss_pred cccceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEE
Q 003360 13 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 92 (826)
Q Consensus 13 ~~~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli 92 (826)
...+.+++|. |++.+++++..||.|++||+.++...+.. +.. ....+..+|..+.|.. ++.+++
T Consensus 122 ~~~~~~~~~s-~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-------~~~----~~~~~~~~v~~~~~~~----~~~~~~ 185 (433)
T 3bws_A 122 GFQPKSVRFI-DNTRLAIPLLEDEGMDVLDINSGQTVRLS-------PPE----KYKKKLGFVETISIPE----HNELWV 185 (433)
T ss_dssp SSCBCCCEES-SSSEEEEEBTTSSSEEEEETTTCCEEEEC-------CCH----HHHTTCCEEEEEEEGG----GTEEEE
T ss_pred CCCceEEEEe-CCCeEEEEeCCCCeEEEEECCCCeEeeec-------Ccc----cccccCCceeEEEEcC----CCEEEE
Confidence 4567899995 58889999999999999999886221110 000 0012233455555522 233333
Q ss_pred EccCCcCccceeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhc
Q 003360 93 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 172 (826)
Q Consensus 93 ~gg~~~~~~~~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~ 172 (826)
....+|.+.+||....
T Consensus 186 ---------------------------------------------------------s~~~d~~v~~~d~~~~------- 201 (433)
T 3bws_A 186 ---------------------------------------------------------SQMQANAVHVFDLKTL------- 201 (433)
T ss_dssp ---------------------------------------------------------EEGGGTEEEEEETTTC-------
T ss_pred ---------------------------------------------------------EECCCCEEEEEECCCc-------
Confidence 3334466777776441
Q ss_pred cCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEE-ec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEE
Q 003360 173 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS-SA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFIT 248 (826)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~-~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~T 248 (826)
.....+..|...+++++|+|+++.+++ +. ++.|.+|+......... ..+.+.+.+ ++|++++|++
T Consensus 202 ----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 202 ----------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK-TDKIGLPRGLLLSKDGKELYI 270 (433)
T ss_dssp ----------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-CCCCSEEEEEEECTTSSEEEE
T ss_pred ----------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE-ecCCCCceEEEEcCCCCEEEE
Confidence 122335578889999999999998855 54 89999998654433322 233445655 9999999998
Q ss_pred EE--------CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE-EEEEeCCCcEEEEEeCCCCCcc
Q 003360 249 GH--------SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV-LVSGDQSGMVRIFKLKYEPHAI 319 (826)
Q Consensus 249 gs--------~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~-Lasgs~dg~V~iwd~~~~~~~~ 319 (826)
++ .||.|++||+..... +..+ .|...+.+++|+|+++. +++++.|+.|++||+.++..
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~--~~~~---------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-- 337 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKL--IDTI---------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV-- 337 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEE--EEEE---------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE--
T ss_pred EECCCCccccCCCeEEEEECCCCcE--Eeec---------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE--
Confidence 88 589999999955442 1111 23357889999999975 56678999999999984322
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec---------------CCeEEEEecCCCeeEEee
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD---------------QGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~---------------dG~V~vwD~~~~~~l~~~ 384 (826)
.....+...+.+++|+|+|.++++++. ||.|++||+.+++++...
T Consensus 338 --------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 338 --------------------QKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp --------------------EEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred --------------------EEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 333345677999999999999988887 579999999999888554
Q ss_pred ecccCCCCCeeEEEEeecccCCCCCcEEEEEEC-CCcEEEEECC
Q 003360 385 HIASDISSGIVSLQFETCSLQGFEKNFLVIATK-DSSVLVLDSD 427 (826)
Q Consensus 385 ~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~-Dg~V~iwd~~ 427 (826)
. ....+.+++|+| ++.+|++++. |+.|++|++.
T Consensus 398 ~----~~~~~~~~~~s~------dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 398 E----AGNQPTGLDVSP------DNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp E----CSSSEEEEEECT------TSCEEEEEETTTTEEEEEEET
T ss_pred c----CCCCCceEEEcC------CCCEEEEEECCCCeEEEEEec
Confidence 3 245789999998 6889988875 9999999976
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.86 E-value=1.1e-19 Score=199.86 Aligned_cols=218 Identities=14% Similarity=0.227 Sum_probs=151.0
Q ss_pred ecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEE-EEEECCCcEEEEeCCCCc
Q 003360 188 MPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLF-ITGHSDGAINFWDVSCPL 264 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l-~Tgs~DGtVriWD~s~~~ 264 (826)
...|...|++++|+|++..+++|++..+++|+....... . ..+.+++.. +.+.++++ ++|+.|++|+|||.....
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~ 92 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHI-M-SQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ 92 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEE-E-EEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCccee-e-eeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence 477999999999999999999999666889976532221 1 122224444 77777766 678889999999995444
Q ss_pred eeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC-CCcccc----c-------eEEEe-ecCC
Q 003360 265 FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE-PHAIEN----S-------FLSFT-GSKK 331 (826)
Q Consensus 265 ~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~-~~~~~~----~-------~~~i~-~s~~ 331 (826)
. +..+. +...|.+++|+++. ++++ .|+.|++||+... .....- . ...+. .+.+
T Consensus 93 ~--~~~~~---------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~ 158 (355)
T 3vu4_A 93 D--VSRIK---------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNL 158 (355)
T ss_dssp E--EEEEE---------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCT
T ss_pred E--EEEEE---------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcC
Confidence 2 22222 34588899888763 3333 3677888888765 221110 0 00011 2223
Q ss_pred CCeEEEEE-----------------------EEEeeccCCeEEEEEccCCCEEEEEecCCe-EEEEecCCCeeEEeeecc
Q 003360 332 GNSHIIHS-----------------------VKVMKINGSIISLNMNRNSQHLAVGSDQGY-VYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 332 ~~~~~~~~-----------------------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~-V~vwD~~~~~~l~~~~~~ 387 (826)
+.. .++. ..+..|.++|++++|+|+|.+||+|+.||+ |+|||+++++++..+.
T Consensus 159 g~v-~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~-- 235 (355)
T 3vu4_A 159 GQI-HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR-- 235 (355)
T ss_dssp TCE-EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE--
T ss_pred cEE-EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE--
Confidence 321 1111 234457888999999999999999999998 9999999999885553
Q ss_pred cC-CCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 388 SD-ISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 388 ~~-~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
.+ |..+|.+++|+| ++.+|++++.|++|++||+..+.
T Consensus 236 ~g~h~~~v~~~~~s~------~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 236 RGLDRADVVDMKWST------DGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp CTTCCSCEEEEEECT------TSCEEEEEETTCEEEEEESSCCS
T ss_pred cCCCCCcEEEEEECC------CCCEEEEEECCCEEEEEEccCCC
Confidence 24 889999999999 69999999999999999998664
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.86 E-value=1.1e-19 Score=193.99 Aligned_cols=185 Identities=8% Similarity=0.057 Sum_probs=122.9
Q ss_pred cccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCC---CCCEEEEEECCCcEEEEeCCCC
Q 003360 189 PFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSK---VKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~---~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
.+|+..|..++|+++++.+.+ . ..|...+.. |++ ++++|++|+.|++|||||+...
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s------------------~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG 213 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKEN------------------Q-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG 213 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEE------------------E-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC
T ss_pred cCCCCcEEEEEECCCCceeee------------------e-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC
Confidence 456666777766666665422 1 345555544 777 7799999999999999999544
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEE------------EEEeCCCcEEEEEeCCCCCccccceEEEeecCC
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL------------VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKK 331 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L------------asgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~ 331 (826)
.. +.++... ..+...|.+++|+|++.++ ++|+.|++|++||..++.... +..+.+ ++
T Consensus 214 k~--l~tL~g~-----~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~---v~~~~~-p~ 282 (356)
T 2w18_A 214 QL--LKKMHID-----DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG---VMLYCL-PP 282 (356)
T ss_dssp CE--EEEEECC-----C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE---EEEECC-CT
T ss_pred cE--EEEEcCC-----CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE---EEEeec-cC
Confidence 32 2333310 1122578899999999876 668899999999988543210 000000 11
Q ss_pred CCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCee-EEEEeecccCCCCCc
Q 003360 332 GNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIV-SLQFETCSLQGFEKN 410 (826)
Q Consensus 332 ~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~-sl~f~~~~~~~~d~~ 410 (826)
.|.+.+.+..++ +.++|+|+.||+|+|||+.+++++.++. +|...+. +++|+| |+.
T Consensus 283 ------------Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~---gH~~~vvs~vafSP------DG~ 339 (356)
T 2w18_A 283 ------------GQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP---PVSDQHWSFVKWSG------TDS 339 (356)
T ss_dssp ------------TCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC---CC--CCCCEEEECS------SSS
T ss_pred ------------CCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec---CCCCCeEEEEEECC------CCC
Confidence 122234444444 7789999999999999999999996553 5665554 689999 699
Q ss_pred EEEEEECCCcEEEEEC
Q 003360 411 FLVIATKDSSVLVLDS 426 (826)
Q Consensus 411 ~l~sgs~Dg~V~iwd~ 426 (826)
+|++|+.|++|+|||.
T Consensus 340 ~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 340 HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEECCCcEEEecC
Confidence 9999999999999985
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.84 E-value=7.7e-19 Score=187.46 Aligned_cols=287 Identities=9% Similarity=0.014 Sum_probs=175.7
Q ss_pred cCCCceeeEEEecCCCCCCCCCCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEee
Q 003360 123 PLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT 202 (826)
Q Consensus 123 ~~~~~~~d~~~l~~~~~~~~~~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~ 202 (826)
+.....+|+..+--. ..+... ..|+...+..+.+|+...- ...+...++.+|+-+|..+.+.|
T Consensus 34 ~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~v~lw~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~ 96 (356)
T 2w18_A 34 PSGSCSVDVSAMFWE--RAGCKE-PCIITACEDVVSLWKALDA--------------WQWEKLYTWHFAEVPVLQIVPVP 96 (356)
T ss_dssp CCSSCEEEEEEEEEC------CE-EEEEEEESSEEEEEEESSS--------------SBEEEEEEEECCSSCEEEECCCT
T ss_pred CCCCeEEEEeeeeec--cCCCCc-cEEEEeccceEEEcccCCC--------------ccceeeEEEeccCceeEEEEEcC
Confidence 445556677665311 011222 3466667788999987661 01234556778887888887877
Q ss_pred CCCeEEE-ec--CCc--EEEe--ccC---CCceeecccccCCcceeeCCCCCEEEEEE--CCCcEEEEeCCC-Cceeeee
Q 003360 203 GNSFILS-SA--DED--YSLL--AKS---VPPLLDFETKLKDGSQSHSKVKNLFITGH--SDGAINFWDVSC-PLFLLIL 269 (826)
Q Consensus 203 ~~~~l~~-~~--d~~--i~~w--~~~---~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs--~DGtVriWD~s~-~~~~~i~ 269 (826)
+-..|+. +. -+. ++.. ... ...... ..+|...|++. ++++++.++. .|+.|++|+++. ... +.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~-s~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~--~~ 172 (356)
T 2w18_A 97 DVYNLVCVALGNLEIREIRALFCSSDDESEKQVLL-KSGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGG--KE 172 (356)
T ss_dssp TCCSCEEEEECSSSEEEEEEECC------CCEEEE-EEEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCE--EE
T ss_pred cccceeeeeeccccccceEEEEECCCccccccEEE-eCCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCce--ee
Confidence 6544433 11 111 1111 111 011111 12233333334 4566666644 699999999932 321 11
Q ss_pred ecccccccccccCCCCeEEEEEeC---CCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee-c
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDG---TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-I 345 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp---~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~ 345 (826)
...+|...|+.++|+| ++..|++|+.|++|+|||+.+++. ++... +
T Consensus 173 --------s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~----------------------l~tL~g~ 222 (356)
T 2w18_A 173 --------NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL----------------------LKKMHID 222 (356)
T ss_dssp --------EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE----------------------EEEEECC
T ss_pred --------eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE----------------------EEEEcCC
Confidence 1236788899999999 779999999999999999996654 11111 1
Q ss_pred ---cCCeEEEEEccCCCEE------------EEEecCCeEEEEecCCCeeEEeeec--ccCCCCCeeEEEEeecccCCCC
Q 003360 346 ---NGSIISLNMNRNSQHL------------AVGSDQGYVYLLDTEGPTVLYQKHI--ASDISSGIVSLQFETCSLQGFE 408 (826)
Q Consensus 346 ---~~~V~~l~~s~~g~~l------------asGs~dG~V~vwD~~~~~~l~~~~~--~~~~~~~V~sl~f~~~~~~~~d 408 (826)
...|.+++|+|+|.++ ++|+.|++|++||..++.++....+ ..+|...+.+..+ +
T Consensus 223 ~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--------s 294 (356)
T 2w18_A 223 DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--------K 294 (356)
T ss_dssp C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--------E
T ss_pred CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--------C
Confidence 2358888999999876 6788999999999999988744321 2455544433332 2
Q ss_pred CcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe
Q 003360 409 KNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC 488 (826)
Q Consensus 409 ~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~ 488 (826)
+.++++|+.|++|+|||+.+|+++.++..|...... ++ .|+|++.+++.+
T Consensus 295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs--~v----------------------------afSPDG~~LaSG 344 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS--FV----------------------------KWSGTDSHLLAG 344 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC--EE----------------------------EECSSSSEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE--EE----------------------------EECCCCCEEEEE
Confidence 678999999999999999999999998655433221 11 245666777766
Q ss_pred ec-CcEEEEec
Q 003360 489 SE-KAACAYSL 498 (826)
Q Consensus 489 se-~~irv~sl 498 (826)
+. +.||||++
T Consensus 345 S~D~TIklWd~ 355 (356)
T 2w18_A 345 QKDGNIFVYHY 355 (356)
T ss_dssp CTTSCEEEEEE
T ss_pred ECCCcEEEecC
Confidence 65 58999985
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.84 E-value=5.9e-18 Score=190.09 Aligned_cols=267 Identities=9% Similarity=0.049 Sum_probs=191.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..++....+|.|++||...-+. . .......+..|...|++++|++++..+++++ |+.+++|+.....
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g~~-----~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSGQT-----V-------RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTCCE-----E-------EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred eEEEEeCCCCeEEEEECCCCeE-----e-------eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 3444555677899999765110 0 0000112457888999999999999999988 9999999865533
Q ss_pred eeecccccCCccee--eCCCCCEE-EEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLF-ITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l-~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
.......|...+.+ |+|+++.+ ++++.||+|++||+..... +..+. +...+.+++|+|+++.|+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--~~~~~---------~~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE--IRKTD---------KIGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEECC---------CCSEEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE--EEEec---------CCCCceEEEEcCCCCEEEEE
Confidence 33322457777777 99999977 4555899999999954442 22222 22468999999999999998
Q ss_pred e--------CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE-EEEecCCeEEE
Q 003360 302 D--------QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL-AVGSDQGYVYL 372 (826)
Q Consensus 302 s--------~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-asGs~dG~V~v 372 (826)
+ .||.|++||+.++.. +....+...+.+++|+|++..+ ++++.|+.|++
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~----------------------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKL----------------------IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEV 329 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEE----------------------EEEEEEEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred ECCCCccccCCCeEEEEECCCCcE----------------------EeeccCCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence 8 589999999984322 2333445578999999999754 66789999999
Q ss_pred EecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC---------------CCcEEEEECCCCceEEeeec
Q 003360 373 LDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK---------------DSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 373 wD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~---------------Dg~V~iwd~~tg~~i~~~~~ 437 (826)
||+.+++++.... +...+.+++|++ ++.+|++++. ||.|++||..+++.+..+..
T Consensus 330 ~d~~~~~~~~~~~----~~~~~~~~~~s~------dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 330 YDLKEKKVQKSIP----VFDKPNTIALSP------DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp EETTTTEEEEEEE----CSSSEEEEEECT------TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred EECCCCcEEEEec----CCCCCCeEEEcC------CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence 9999998875443 456789999998 5888888876 57999999999998877643
Q ss_pred cCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEe-e-cCcEEEEecc
Q 003360 438 HPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLC-S-EKAACAYSLS 499 (826)
Q Consensus 438 ~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-s-e~~irv~sl~ 499 (826)
+ ..+..+. +++++.+++++ . ++.|++|++.
T Consensus 400 ~----~~~~~~~----------------------------~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 400 G----NQPTGLD----------------------------VSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp S----SSEEEEE----------------------------ECTTSCEEEEEETTTTEEEEEEET
T ss_pred C----CCCceEE----------------------------EcCCCCEEEEEECCCCeEEEEEec
Confidence 1 1222222 33455565554 3 6799999986
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.83 E-value=6.6e-18 Score=187.00 Aligned_cols=229 Identities=11% Similarity=0.155 Sum_probs=170.1
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeE-EEec-CCcEEEeccCCCc
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFI-LSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l-~~~~-d~~i~~w~~~~~~ 224 (826)
.++....+|.|.+||...- .....+..| ..+++++|+|+++.+ ++++ |+.|++|+.....
T Consensus 4 l~vs~~~d~~v~v~d~~~~-----------------~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~ 65 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSN-----------------KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65 (391)
T ss_dssp EEEEETTTTEEEEEETTTT-----------------EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred EEEEcCCCCEEEEEECCCC-----------------eEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCe
Confidence 3456677899999998651 122234444 458999999999987 4565 9999999875544
Q ss_pred eeecccccCCccee--eCCCCCEEE-EEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEE-EE
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLFI-TGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL-VS 300 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l~-Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L-as 300 (826)
.... ..+...+.+ |+|++++|+ +++.|++|++||+..... +..+. +...+.+++|+|+++.| ++
T Consensus 66 ~~~~-~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~--~~~~~---------~~~~~~~~~~s~dg~~l~~~ 133 (391)
T 1l0q_A 66 VIAT-VPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV--AGTVK---------TGKSPLGLALSPDGKKLYVT 133 (391)
T ss_dssp EEEE-EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEE---------CSSSEEEEEECTTSSEEEEE
T ss_pred EEEE-EECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeE--EEEEe---------CCCCcceEEECCCCCEEEEE
Confidence 4333 233346766 999999775 555779999999965542 11122 33578999999999977 68
Q ss_pred EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE-EEEecCCeEEEEecCCCe
Q 003360 301 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL-AVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 301 gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-asGs~dG~V~vwD~~~~~ 379 (826)
++.++.|++||+.++.. .........+.+++|+|+++++ ++++.+|.|++||+++++
T Consensus 134 ~~~~~~v~~~d~~~~~~----------------------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAV----------------------INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ETTTTEEEEEETTTTEE----------------------EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred eCCCCEEEEEECCCCcE----------------------EEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 88899999999974322 2233335668999999999887 677889999999999998
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE---CCCcEEEEECCCCceEEeeec
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT---KDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs---~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
++.... +...+.+++|++ ++.+|++++ .++.|++||+.+++.+..+..
T Consensus 192 ~~~~~~----~~~~~~~~~~~~------~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 242 (391)
T 1l0q_A 192 VIDTVK----VEAAPSGIAVNP------EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV 242 (391)
T ss_dssp EEEEEE----CSSEEEEEEECT------TSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred EEEEEe----cCCCccceEECC------CCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence 874443 345788999998 588888888 689999999999988877644
No 127
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.77 E-value=1.7e-15 Score=190.06 Aligned_cols=193 Identities=16% Similarity=0.120 Sum_probs=148.0
Q ss_pred CEEEEEEeeCCCeEEEecCCcEEEeccCCCceeeccc----------ccCCccee--eC-CCCCEEEEEECCCcEEEEeC
Q 003360 194 SITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFET----------KLKDGSQS--HS-KVKNLFITGHSDGAINFWDV 260 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~----------~h~g~V~~--~s-~~~~~l~Tgs~DGtVriWD~ 260 (826)
.+...+|+|+++.++.+.++.+.+|+.....+..+.. .|.+.+.+ |+ |+|+.|++++ ++.|.+|+.
T Consensus 246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp SSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred CcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 4566799999999999889999999764333332211 13445666 99 9999999888 889999999
Q ss_pred CCCceeeeeecccccccccccCCC-CeEEEEEeCCCCEEEEEeCCCcEE-EEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGI-PLTALYYDGTSRVLVSGDQSGMVR-IFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~-~V~~l~fsp~~~~Lasgs~dg~V~-iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
....... + ..|.. .+..++|+ +++.|++++.++.+. +|++..+..
T Consensus 325 ~~~~~~~---~--------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~--------------------- 371 (1045)
T 1k32_A 325 SGTYVLK---V--------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA--------------------- 371 (1045)
T ss_dssp TSSBEEE---C--------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE---------------------
T ss_pred CCCceEE---c--------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc---------------------
Confidence 5544211 1 23445 79999999 999999999888888 888864321
Q ss_pred EEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 339 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 339 ~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
.....+...+.+++|+|+|++||+++.++.|++||+.++++.... ..|...+.+++|+| |+.+|++++.+
T Consensus 372 -~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~---~~~~~~v~~~~~Sp------DG~~la~~~~~ 441 (1045)
T 1k32_A 372 -EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE---RSREAMITDFTISD------NSRFIAYGFPL 441 (1045)
T ss_dssp -EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSSCCCCEEECT------TSCEEEEEEEE
T ss_pred -eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec---cCCCCCccceEECC------CCCeEEEEecC
Confidence 112234567999999999999999999999999999998876433 25777889999999 69989888765
Q ss_pred C----------cEEEEECCCCc
Q 003360 419 S----------SVLVLDSDNGN 430 (826)
Q Consensus 419 g----------~V~iwd~~tg~ 430 (826)
+ .|++||..+++
T Consensus 442 ~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 442 KHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CSSTTCSCCEEEEEEEETTTTE
T ss_pred ccccccCCCCCeEEEEECCCCc
Confidence 4 89999999877
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.77 E-value=9.2e-17 Score=180.37 Aligned_cols=217 Identities=7% Similarity=-0.004 Sum_probs=159.7
Q ss_pred ccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CC---cEEEeccCCCceeeccc
Q 003360 155 GHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DE---DYSLLAKSVPPLLDFET 230 (826)
Q Consensus 155 G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~---~i~~w~~~~~~~~~~~~ 230 (826)
+.|++||... . ....+..|...|.+++|+|+++.+++++ ++ .+.+|+........+ .
T Consensus 159 ~~i~i~d~~g----------------~--~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l-~ 219 (415)
T 2hqs_A 159 YELRVSDYDG----------------Y--NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-A 219 (415)
T ss_dssp EEEEEEETTS----------------C--SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE-E
T ss_pred ceEEEEcCCC----------------C--CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe-e
Confidence 6788888644 0 1234567888999999999999999987 54 899998765554444 5
Q ss_pred ccCCccee--eCCCCCEEE-EEECCCc--EEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-C
Q 003360 231 KLKDGSQS--HSKVKNLFI-TGHSDGA--INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-S 304 (826)
Q Consensus 231 ~h~g~V~~--~s~~~~~l~-Tgs~DGt--VriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-d 304 (826)
.|.+.+.+ |+|+++.|+ +++.||. |++||+..... .. +..|...+.+++|+|+++.|++++. +
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~---~~--------l~~~~~~~~~~~~spdg~~l~~~s~~~ 288 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI---RQ--------VTDGRSNNTEPTWFPDSQNLAFTSDQA 288 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---EE--------CCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE---Ee--------CcCCCCcccceEECCCCCEEEEEECCC
Confidence 67777777 999999777 7777766 89999955442 11 2346678999999999999988876 5
Q ss_pred C--cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC---CeEEEEecCCCe
Q 003360 305 G--MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ---GYVYLLDTEGPT 379 (826)
Q Consensus 305 g--~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d---G~V~vwD~~~~~ 379 (826)
| .|.+||+.++.. .....+...+.+++|+|+|++|++++.+ +.|++||+.+++
T Consensus 289 g~~~i~~~d~~~~~~----------------------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 289 GRPQVYKVNINGGAP----------------------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp SSCEEEEEETTSSCC----------------------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred CCcEEEEEECCCCCE----------------------EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 6 566667664321 1222234568899999999999988864 589999999887
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC---cEEEEECCCCceEEee
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS---SVLVLDSDNGNMLSTN 435 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg---~V~iwd~~tg~~i~~~ 435 (826)
+.. + ..+. .+.++.|+| |+.+|++++.++ .|++||+. |+....+
T Consensus 347 ~~~---l-~~~~-~~~~~~~sp------dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l 393 (415)
T 2hqs_A 347 VQV---L-SSTF-LDETPSLAP------NGTMVIYSSSQGMGSVLNLVSTD-GRFKARL 393 (415)
T ss_dssp EEE---C-CCSS-SCEEEEECT------TSSEEEEEEEETTEEEEEEEETT-SCCEEEC
T ss_pred EEE---e-cCCC-CcCCeEEcC------CCCEEEEEEcCCCccEEEEEECC-CCcEEEe
Confidence 642 2 1233 889999999 699999888877 79999998 5555554
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.72 E-value=6.5e-15 Score=170.97 Aligned_cols=340 Identities=11% Similarity=0.088 Sum_probs=206.1
Q ss_pred CCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEEEccCCcCccc
Q 003360 23 CPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMN 102 (826)
Q Consensus 23 ~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli~gg~~~~~~~ 102 (826)
+|++..+++++.||+|.+||..++....+ +..+. .+..+.+. +.+..||+.+.+ .
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~~~------------i~~g~-----~~~~v~~s---pdg~~l~v~~~d-----~ 200 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKIVKV------------IDTGY-----AVHISRMS---ASGRYLLVIGRD-----A 200 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCEEEE------------EECST-----TEEEEEEC---TTSCEEEEEETT-----S
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceEEEE------------EecCc-----ccceEEEC---CCCCEEEEECCC-----C
Confidence 67899999999999999999988622211 11111 13344343 233455555433 4
Q ss_pred eeEEEEcccCCcceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEec-cCccEEEecchhHHHHHhhccCCCCCCCC
Q 003360 103 LLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLG-KSGHFYAFDDCQIERYLLQYQSRSPPSAP 181 (826)
Q Consensus 103 ~~~vl~~~~~~~~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~-~~G~l~~~d~~~i~~~~~~~~~~~~~~~~ 181 (826)
.+.++.++..+... ...++.......+.+-+ +.+ .+...+++.. .++.+.+||..+.+.
T Consensus 201 ~V~v~D~~~~t~~~--~~~i~~g~~p~~va~sp---~~~-~dg~~l~v~~~~~~~v~v~D~~t~~~-------------- 260 (543)
T 1nir_A 201 RIDMIDLWAKEPTK--VAEIKIGIEARSVESSK---FKG-YEDRYTIAGAYWPPQFAIMDGETLEP-------------- 260 (543)
T ss_dssp EEEEEETTSSSCEE--EEEEECCSEEEEEEECC---STT-CTTTEEEEEEEESSEEEEEETTTCCE--------------
T ss_pred eEEEEECcCCCCcE--EEEEecCCCcceEEeCC---CcC-CCCCEEEEEEccCCeEEEEecccccc--------------
Confidence 56666663123221 12233333333333222 000 1334566655 479999999766210
Q ss_pred ccceeee--------ccc-CCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceee-cccccCCccee--eCCCCCEEE
Q 003360 182 KEVMLKM--------PFL-DSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLD-FETKLKDGSQS--HSKVKNLFI 247 (826)
Q Consensus 182 ~~~~~~l--------~~h-~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~-~~~~h~g~V~~--~s~~~~~l~ 247 (826)
...+.. .+| ++.+..+.++++++.++.+. ++.|.+|+........ ...++...+.. |+|++++++
T Consensus 261 -~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 261 -KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp -EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred -ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence 000101 113 34799999999888776644 8889999754422211 11233334444 999999766
Q ss_pred EE-ECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEe-CCCcEEEEEeCCCCCccccceE
Q 003360 248 TG-HSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGD-QSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 248 Tg-s~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
++ ..|++|++||+....+ +..+.. . -..|......+ ++|+ +..++++. .|++|.+||........
T Consensus 340 va~~~~~~v~v~D~~tg~l--~~~i~~---g-~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~----- 407 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDRRL--SALVDV---G-KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ----- 407 (543)
T ss_dssp EEEGGGTEEEEEETTTTEE--EEEEEC---S-SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT-----
T ss_pred EEecCCCeEEEEECCCCeE--EEeecc---C-CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch-----
Confidence 55 5689999999955443 222221 0 12354333333 5787 66677765 58999999998521100
Q ss_pred EEeecCCCCeEEEEEEEEee-ccCCeEEEEEccCCCEEEEEe-------cCCeEEEEecCCCeeEEee-ec-----ccCC
Q 003360 325 SFTGSKKGNSHIIHSVKVMK-INGSIISLNMNRNSQHLAVGS-------DQGYVYLLDTEGPTVLYQK-HI-----ASDI 390 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~-~~~~V~~l~~s~~g~~lasGs-------~dG~V~vwD~~~~~~l~~~-~~-----~~~~ 390 (826)
..... ++... +.+.+..++++|+|++|++++ .+++|.|||+.++++.+.. .+ ...+
T Consensus 408 -----~~~~~-----v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~ 477 (543)
T 1nir_A 408 -----YAWKK-----VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 477 (543)
T ss_dssp -----TBTSE-----EEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred -----hcCeE-----EEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC
Confidence 00112 33333 345678899999999999987 3789999999998877332 11 1244
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEEE-----CCCcEEEEECCCCceEEeee
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIAT-----KDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sgs-----~Dg~V~iwd~~tg~~i~~~~ 436 (826)
...+..++|++ |+..++++. .|+.|.|||..|++++.++.
T Consensus 478 ~~~~~~~~~~~------~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 478 AKRVVQPEYNK------RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CCEEEEEEECS------SSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCceEeccCCC------CCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 67899999999 688888764 37999999999999998853
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.71 E-value=4.7e-14 Score=163.75 Aligned_cols=327 Identities=10% Similarity=0.082 Sum_probs=203.3
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEecc--C
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAK--S 221 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~--~ 221 (826)
...++....+|.+.+||..+. .....++.+.. +..++|+|+++++++++ |+.|.+|+. .
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~-----------------~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~ 210 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSK-----------------KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAK 210 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTC-----------------CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred CEEEEEEcCCCeEEEEECCCc-----------------eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 344556667789999987651 12233443333 88999999999999988 999999987 4
Q ss_pred CCceeecccccCCccee--eCC----CCCEEEEEE-CCCcEEEEeCCCCceeeeeeccccc--ccccccCC-CCeEEEEE
Q 003360 222 VPPLLDFETKLKDGSQS--HSK----VKNLFITGH-SDGAINFWDVSCPLFLLILSLKQQS--EKDFSLSG-IPLTALYY 291 (826)
Q Consensus 222 ~~~~~~~~~~h~g~V~~--~s~----~~~~l~Tgs-~DGtVriWD~s~~~~~~i~~l~~~~--~~~~~~h~-~~V~~l~f 291 (826)
....... ..+..+... |+| +++++++++ .+++|.+||...... +..+.... ......|. ..|.++.+
T Consensus 211 t~~~~~~-i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~--~~~i~~~g~~~~~~~~~~~~~v~~i~~ 287 (543)
T 1nir_A 211 EPTKVAE-IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP--KQIVSTRGMTVDTQTYHPEPRVAAIIA 287 (543)
T ss_dssp SCEEEEE-EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE--EEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred CCcEEEE-EecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc--ceeecccCcccCccccccCCceEEEEE
Confidence 3322221 233334444 999 999988887 589999999843332 22232100 00001133 47999999
Q ss_pred eCCCCE-EEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE-ecCCe
Q 003360 292 DGTSRV-LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG-SDQGY 369 (826)
Q Consensus 292 sp~~~~-Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG-s~dG~ 369 (826)
+|++.. +++...+|.|.+||+...... . +....+...+.+++|+|+|++++++ ..+++
T Consensus 288 s~~~~~~~vs~~~~g~i~vvd~~~~~~l-----------------~---~~~i~~~~~~~~~~~spdg~~l~va~~~~~~ 347 (543)
T 1nir_A 288 SHEHPEFIVNVKETGKVLLVNYKDIDNL-----------------T---VTSIGAAPFLHDGGWDSSHRYFMTAANNSNK 347 (543)
T ss_dssp CSSSSEEEEEETTTTEEEEEECTTSSSC-----------------E---EEEEECCSSCCCEEECTTSCEEEEEEGGGTE
T ss_pred CCCCCEEEEEECCCCeEEEEEecCCCcc-----------------e---eEEeccCcCccCceECCCCCEEEEEecCCCe
Confidence 997754 556677899999999854321 0 1222334557889999999977655 46899
Q ss_pred EEEEecCCCeeEEeeeccc-CCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECCC-------CceEEeeeccCC
Q 003360 370 VYLLDTEGPTVLYQKHIAS-DISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDN-------GNMLSTNLIHPK 440 (826)
Q Consensus 370 V~vwD~~~~~~l~~~~~~~-~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~t-------g~~i~~~~~~~~ 440 (826)
|.+||+.+++++....... .|......+ +.|. .+..++++. .|++|.+||..+ ++++.++.++..
T Consensus 348 v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~-----~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~ 421 (543)
T 1nir_A 348 VAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPK-----YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG 421 (543)
T ss_dssp EEEEETTTTEEEEEEECSSSBCCTTCEEE-EETT-----TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred EEEEECCCCeEEEeeccCCCCCCCCCccc-CCCC-----CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC
Confidence 9999999999886554321 133333332 3441 255555554 589999999998 777777655432
Q ss_pred CCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEee--------cCcEEEEeccccccccceeeeee
Q 003360 441 KPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS--------EKAACAYSLSHAVQGVKKVLYKK 512 (826)
Q Consensus 441 ~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~s--------e~~irv~sl~~~~~g~~k~~~k~ 512 (826)
. .+++ .+++++.+|.+++ ++.|+||++.+. +..++.
T Consensus 422 ~---~~~v----------------------------~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~-----~~~~~~ 465 (543)
T 1nir_A 422 G---SLFI----------------------------KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL-----DAKYQV 465 (543)
T ss_dssp C---CCCE----------------------------ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT-----TSCCEE
T ss_pred C---ceEE----------------------------EcCCCCCcEEEecCCCCCcccCceEEEEECCCC-----CCCeEE
Confidence 1 1111 2456667777776 679999999842 222111
Q ss_pred -ec------CC-CCceeeEeeeeCCceEE-EEEE----eeceEEEeccCCcccccc
Q 003360 513 -KF------HS-SSCCWASTFYSGSDVGL-MLLF----TSGKFEIRSLPELSLLKE 555 (826)
Q Consensus 513 -~~------~~-~~c~~~~~~~~~~~~~l-v~~~----~~G~I~i~slP~L~~l~~ 555 (826)
.. .+ ..-.+...+. +.+.-+ +..+ .++.|.|+....++++..
T Consensus 466 ~~v~~~~~~~~~~~~~~~~~~~-~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 466 LPIAEWADLGEGAKRVVQPEYN-KRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 520 (543)
T ss_dssp ECHHHHHCCCSSCCEEEEEEEC-SSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred eechhhcccCCCCCceEeccCC-CCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence 00 10 1111222222 333333 3344 369999999888887766
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.69 E-value=5.1e-15 Score=178.50 Aligned_cols=234 Identities=10% Similarity=0.049 Sum_probs=153.0
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCce
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPL 225 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~ 225 (826)
..+++.. .+.|++||... . ..+ ....+..|...+..++|+|||+.++.++++.|.+|+......
T Consensus 121 ~~l~~~~-~~~i~~~d~~~-------~---~~~-----~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 121 QRLLFPL-GGELYLYDLKQ-------E---GKA-----AVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQ 184 (741)
T ss_dssp SEEEEEE-TTEEEEEESSS-------C---STT-----SCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEE
T ss_pred CEEEEEe-CCcEEEEECCC-------C---Ccc-----eEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCE
Confidence 3333333 48999998765 1 000 112345677889999999999999998888999997655443
Q ss_pred eecccccCCc----------------cee--eCCCCCEEEEEECCC---------------------------------c
Q 003360 226 LDFETKLKDG----------------SQS--HSKVKNLFITGHSDG---------------------------------A 254 (826)
Q Consensus 226 ~~~~~~h~g~----------------V~~--~s~~~~~l~Tgs~DG---------------------------------t 254 (826)
......+... +.+ |+|+|++|++++.|+ .
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 3332222221 233 999999999998876 7
Q ss_pred EEEEeCCC-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEEeCCCCCccccceEEEee
Q 003360 255 INFWDVSC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-----SGMVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 255 VriWD~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-----dg~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
|++||+.+ ..... +... ..|...|..++| |+++.|++++. +..|.+||+.++...
T Consensus 265 l~~~d~~~~~~~~~---~~~~-----~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~---------- 325 (741)
T 2ecf_A 265 LGVISPAEQAQTQW---IDLG-----KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR---------- 325 (741)
T ss_dssp EEEECSSTTCCCEE---ECCC-----SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE----------
T ss_pred EEEEECCCCCceEE---ecCC-----CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE----------
Confidence 88899854 44211 1100 135578999999 99999997754 568999998754321
Q ss_pred cCCCCeEEEEEEEEeeccC---CeEEEEEccCCCEEEEEecCCeEEEEecC-CCeeEEeeecccCCCCCeeEE-EEeecc
Q 003360 329 SKKGNSHIIHSVKVMKING---SIISLNMNRNSQHLAVGSDQGYVYLLDTE-GPTVLYQKHIASDISSGIVSL-QFETCS 403 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~~~~---~V~~l~~s~~g~~lasGs~dG~V~vwD~~-~~~~l~~~~~~~~~~~~V~sl-~f~~~~ 403 (826)
. +....... .+.+++|+|+|+++++++.||.++||.+. .+. .. .+ ..+...|.++ .|++
T Consensus 326 -------~---~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~--~l-~~~~~~v~~~~~~s~-- 389 (741)
T 2ecf_A 326 -------V---LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AA--AL-THGNWSVDELLAVDE-- 389 (741)
T ss_dssp -------E---EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EE--ES-CCSSSCEEEEEEEET--
T ss_pred -------E---EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-ee--ee-eecceEEEeEeEEeC--
Confidence 0 11111112 35688999999999999999988888765 333 32 22 3456678777 5998
Q ss_pred cCCCCCcEEEE-EECCC--cEEEEECCC-CceEEe
Q 003360 404 LQGFEKNFLVI-ATKDS--SVLVLDSDN-GNMLST 434 (826)
Q Consensus 404 ~~~~d~~~l~s-gs~Dg--~V~iwd~~t-g~~i~~ 434 (826)
|+..|+. ++.++ .+++|+... |.....
T Consensus 390 ----dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 390 ----KAGLAYFRAGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp ----TTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred ----CCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence 5776654 45555 889998764 544443
No 132
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.68 E-value=5.3e-16 Score=175.12 Aligned_cols=204 Identities=11% Similarity=0.093 Sum_probs=143.9
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCC-----------Cceeec----ccccCCccee--eCCCCCEEE----EE
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSV-----------PPLLDF----ETKLKDGSQS--HSKVKNLFI----TG 249 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~-----------~~~~~~----~~~h~g~V~~--~s~~~~~l~----Tg 249 (826)
.+.++.+++++++..+++++ ++ +++|.... ...... ..+|.+.|.+ |++++++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34678899999999999988 66 77763211 011111 1335667877 999999999 78
Q ss_pred ECCCcEEEEeCCCC------ceeeeeecccccccccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccc
Q 003360 250 HSDGAINFWDVSCP------LFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 250 s~DGtVriWD~s~~------~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~ 322 (826)
+.|++|+|||+... ...++..+ ..+..|...|++|+|+|+ +.+|++|+.||+|++||++.+..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~----- 184 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYH-----KLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK----- 184 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEE-----ECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----
T ss_pred CCCceEEEEEccccccCCcCCcceeeee-----eccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----
Confidence 89999999998321 10011111 123457889999999998 78999999999999999984311
Q ss_pred eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc----CCCCCeeEEE
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS----DISSGIVSLQ 398 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~----~~~~~V~sl~ 398 (826)
. .....|...|++++|+|+|.+|++|+.||+|++||++ +.......... .|...|.++.
T Consensus 185 ------------~----~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~ 247 (434)
T 2oit_A 185 ------------V----CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVL 247 (434)
T ss_dssp ------------E----EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEE
T ss_pred ------------e----eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEE
Confidence 0 2334467789999999999999999999999999998 44443232211 2334799999
Q ss_pred EeecccCCCCCcEEEE-EECCCc------EEEEECCCC
Q 003360 399 FETCSLQGFEKNFLVI-ATKDSS------VLVLDSDNG 429 (826)
Q Consensus 399 f~~~~~~~~d~~~l~s-gs~Dg~------V~iwd~~tg 429 (826)
|.+ ++.++++ .+.||. +++|++.+.
T Consensus 248 w~~------~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 248 WIG------TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEE------TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred Eec------CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 998 3555544 445543 899998854
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.68 E-value=3.7e-15 Score=167.27 Aligned_cols=176 Identities=13% Similarity=0.052 Sum_probs=133.3
Q ss_pred CcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCC---cEEEEeCCCCceeeeeecccccccccccCCCCeE
Q 003360 213 EDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDG---AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLT 287 (826)
Q Consensus 213 ~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DG---tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~ 287 (826)
+.|++|+........+ .+|.+.+.+ |+|+++.|++++.|+ .|++||+....... + ..|...+.
T Consensus 159 ~~i~i~d~~g~~~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~---l--------~~~~~~~~ 226 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---V--------ASFPRHNG 226 (415)
T ss_dssp EEEEEEETTSCSCEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---E--------ECCSSCEE
T ss_pred ceEEEEcCCCCCCEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE---e--------ecCCCccc
Confidence 6899997765444544 668888888 999999999999886 99999995444211 1 23556899
Q ss_pred EEEEeCCCCEEE-EEeCCCc--EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE
Q 003360 288 ALYYDGTSRVLV-SGDQSGM--VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG 364 (826)
Q Consensus 288 ~l~fsp~~~~La-sgs~dg~--V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG 364 (826)
+++|+|+++.|+ +++.+|. |.+||+.++.. .....+...+.+++|+|+|++|+++
T Consensus 227 ~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~----------------------~~l~~~~~~~~~~~~spdg~~l~~~ 284 (415)
T 2hqs_A 227 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQI----------------------RQVTDGRSNNTEPTWFPDSQNLAFT 284 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----------------------EECCCCSSCEEEEEECTTSSEEEEE
T ss_pred CEEEcCCCCEEEEEEecCCCceEEEEECCCCCE----------------------EeCcCCCCcccceEECCCCCEEEEE
Confidence 999999999888 6777765 88889874322 2333456679999999999999988
Q ss_pred ec-CC--eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC---CcEEEEECCCCceE
Q 003360 365 SD-QG--YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD---SSVLVLDSDNGNML 432 (826)
Q Consensus 365 s~-dG--~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D---g~V~iwd~~tg~~i 432 (826)
+. +| .|++||+.++.+.. . ..+...+.++.|+| |+.+|++++.+ ..|++||..+++..
T Consensus 285 s~~~g~~~i~~~d~~~~~~~~-l---~~~~~~~~~~~~sp------dG~~l~~~~~~~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 285 SDQAGRPQVYKVNINGGAPQR-I---TWEGSQNQDADVSS------DGKFMVMVSSNGGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp ECTTSSCEEEEEETTSSCCEE-C---CCSSSEEEEEEECT------TSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred ECCCCCcEEEEEECCCCCEEE-E---ecCCCcccCeEECC------CCCEEEEEECcCCceEEEEEECCCCCEE
Confidence 86 45 68888998876441 1 23456788999999 68989888764 58999999988764
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.67 E-value=2.3e-14 Score=150.55 Aligned_cols=221 Identities=11% Similarity=0.087 Sum_probs=158.4
Q ss_pred cCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCC-Cceeecccc
Q 003360 153 KSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSV-PPLLDFETK 231 (826)
Q Consensus 153 ~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~-~~~~~~~~~ 231 (826)
..+.|++||...- ....+..|...|.+++|+|+++.+++++++.+.+|+... .........
T Consensus 20 ~~~~i~~~d~~~~------------------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (297)
T 2ojh_A 20 MRSSIEIFNIRTR------------------KMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTG 81 (297)
T ss_dssp CCEEEEEEETTTT------------------EEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCT
T ss_pred cceeEEEEeCCCC------------------ceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccc
Confidence 4578889987651 122345678899999999999999998899999997665 444433233
Q ss_pred c-CCccee--eCCCCCEEEEEE--CCCcEEEEeC--CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE-EEeC
Q 003360 232 L-KDGSQS--HSKVKNLFITGH--SDGAINFWDV--SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV-SGDQ 303 (826)
Q Consensus 232 h-~g~V~~--~s~~~~~l~Tgs--~DGtVriWD~--s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La-sgs~ 303 (826)
+ ...+.+ |+|++++|++++ .++.++||.+ .+... ..+. +...+..++|+|+++.|+ +++.
T Consensus 82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~---~~~~---------~~~~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP---RLMT---------KNLPSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC---EECC---------SSSSEEEEEECTTSSEEEEEEEE
T ss_pred cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce---EEee---------cCCCccceEECCCCCEEEEEECC
Confidence 4 355655 999999999999 4466777766 33331 1111 223588999999999887 7888
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecC-CCeeE
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTE-GPTVL 381 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~-~~~~l 381 (826)
++.++||++..... .. .....+...+.+++|+|+|.+|++++ .++.++||++. .+..+
T Consensus 150 ~~~~~l~~~~~~~~---------------~~-----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~ 209 (297)
T 2ojh_A 150 DQVFDIYSMDIDSG---------------VE-----TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV 209 (297)
T ss_dssp TTEEEEEEEETTTC---------------CE-----EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE
T ss_pred CCceEEEEEECCCC---------------cc-----eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc
Confidence 99999999863211 11 23334566799999999999888766 58999999986 34333
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC-----------CcEEEEECCCCceE
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD-----------SSVLVLDSDNGNML 432 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D-----------g~V~iwd~~tg~~i 432 (826)
... ..+...+.++.|+| ++.+|++++.+ +.|++||+.+++..
T Consensus 210 ~~~---~~~~~~~~~~~~s~------dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 210 ERI---TDSAYGDWFPHPSP------SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp EEC---CCCSEEEEEEEECT------TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred EEE---ecCCcccCCeEECC------CCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 222 34556788899998 68888888876 56999999987653
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.65 E-value=4.8e-13 Score=144.17 Aligned_cols=241 Identities=11% Similarity=0.126 Sum_probs=150.7
Q ss_pred ceEEEeccC-ccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccC-
Q 003360 146 DSFLLLGKS-GHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKS- 221 (826)
Q Consensus 146 ~~liv~~~~-G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~- 221 (826)
..++++... +.+.+|+...- . + .......++.+. .+..++|+|+++.+++++ ++.+.+|+..
T Consensus 50 ~~l~~~~~~~~~v~~~~~~~~-------~-~-----~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~ 115 (343)
T 1ri6_A 50 RYLYVGVRPEFRVLAYRIAPD-------D-G-----ALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLED 115 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTT-------T-C-----CEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CEEEEeecCCCeEEEEEecCC-------C-C-----ceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCC
Confidence 455666555 89999987520 0 0 001112233333 778999999999887755 7889999762
Q ss_pred --CCceeecccccCCccee--eCCCCCEEEEEE-CCCcEEEEeCCC-Cceeeee--ecccccccccccCCCCeEEEEEeC
Q 003360 222 --VPPLLDFETKLKDGSQS--HSKVKNLFITGH-SDGAINFWDVSC-PLFLLIL--SLKQQSEKDFSLSGIPLTALYYDG 293 (826)
Q Consensus 222 --~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs-~DGtVriWD~s~-~~~~~i~--~l~~~~~~~~~~h~~~V~~l~fsp 293 (826)
....... ......+.+ |+|+++++++++ .|+.|++||+.. .....+. .+. ...+..+..++|+|
T Consensus 116 ~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~p 187 (343)
T 1ri6_A 116 GLPVGVVDV-VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-------TVEGAGPRHMVFHP 187 (343)
T ss_dssp TEEEEEEEE-ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-------CSTTCCEEEEEECT
T ss_pred Ccccccccc-ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc-------cCCCCCcceEEECC
Confidence 1111111 222233554 999999888777 899999999954 4422211 111 11235788999999
Q ss_pred CCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee----ccCCeEEEEEccCCCEEEEE-ecC
Q 003360 294 TSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK----INGSIISLNMNRNSQHLAVG-SDQ 367 (826)
Q Consensus 294 ~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~----~~~~V~~l~~s~~g~~lasG-s~d 367 (826)
++++|++++ .++.|.+|++...... +. ......... ....+.+++|+|+|++|+++ ..+
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~----~~-----------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~ 252 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGN----IE-----------CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA 252 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSC----CE-----------EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCc----EE-----------EEeeccccCccccccCCccceEECCCCCEEEEEecCC
Confidence 999776554 7899999999632110 00 000011011 02357789999999887754 479
Q ss_pred CeEEEEecC--CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEE--ECCCCce
Q 003360 368 GYVYLLDTE--GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVL--DSDNGNM 431 (826)
Q Consensus 368 G~V~vwD~~--~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iw--d~~tg~~ 431 (826)
+.|++||+. +++........ .+ ..+..++|++ ++.+|++++ .++.|.+| |..+|+.
T Consensus 253 ~~i~v~d~~~~~~~~~~~~~~~-~~-~~~~~~~~s~------dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 253 SLITVFSVSEDGSVLSKEGFQP-TE-TQPRGFNVDH------SGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp TEEEEEEECTTSCCEEEEEEEE-CS-SSCCCEEECT------TSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CEEEEEEEcCCCCceEEeeeec-CC-CccceEEECC------CCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 999999998 33322112221 22 2378899998 688888887 68999999 6557754
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.64 E-value=5.7e-14 Score=169.33 Aligned_cols=211 Identities=7% Similarity=0.020 Sum_probs=146.9
Q ss_pred CCCEEEEEEeeCCCeEEEec--CC-----cEEEeccCCCceeecccccC------------------------Cccee--
Q 003360 192 DSSITAMKLITGNSFILSSA--DE-----DYSLLAKSVPPLLDFETKLK------------------------DGSQS-- 238 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~--d~-----~i~~w~~~~~~~~~~~~~h~------------------------g~V~~-- 238 (826)
...|+.++|+|||+.+++++ |+ .|.+|+............+. .++.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 45689999999999999876 66 79999765544333312222 22555
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCC---ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCP---LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~---~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
|+|+|++|++++. +.|++||+.+. .. ..+..|...+.+++|+||++.|+.++. +.|.+||+.++
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~-----------~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g 182 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV-----------RQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASG 182 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSC-----------CBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTT
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceE-----------EEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCC
Confidence 9999999999987 99999999554 31 112345678999999999999999874 58999999754
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEe-------eccCCeEEEEEccCCCEEEEEecCC--------------------
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVM-------KINGSIISLNMNRNSQHLAVGSDQG-------------------- 368 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~-------~~~~~V~~l~~s~~g~~lasGs~dG-------------------- 368 (826)
.. ..+.. .+... +..+ .....+.+++|||||++|++++.|+
T Consensus 183 ~~------~~~~~--~~~~~----~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~ 250 (741)
T 2ecf_A 183 RQ------MQLTA--DGSTT----IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIE 250 (741)
T ss_dssp EE------EECCC--CCCSS----EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred CE------EEecc--CCccc----eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence 21 00000 00000 0000 0011257899999999999998776
Q ss_pred -------------eEEEEecCC-CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC-----CCcEEEEECCCC
Q 003360 369 -------------YVYLLDTEG-PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK-----DSSVLVLDSDNG 429 (826)
Q Consensus 369 -------------~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~-----Dg~V~iwd~~tg 429 (826)
.|++||+.+ +++.... ....+...+.++.| | |+.+|++++. +..|++||..+|
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~-p------Dg~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPAEQAQTQWID-LGKEQDIYLARVNW-R------DPQHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSSTTCCCEEEC-CCSCSSEEEEEEEE-E------ETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred eecCCCCCCCCeeEEEEEECCCCCceEEec-CCCCcceEEEEEEe-C------CCCEEEEEEecccCCeEEEEEEECCCC
Confidence 889999988 7755222 11246678999999 9 6888887664 568999999998
Q ss_pred ceEEee
Q 003360 430 NMLSTN 435 (826)
Q Consensus 430 ~~i~~~ 435 (826)
++...+
T Consensus 323 ~~~~~~ 328 (741)
T 2ecf_A 323 QQRVLA 328 (741)
T ss_dssp CEEEEE
T ss_pred ceEEEE
Confidence 876554
No 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.64 E-value=7.6e-14 Score=175.06 Aligned_cols=196 Identities=16% Similarity=0.060 Sum_probs=153.1
Q ss_pred cCCCEEEEEEe-eCCCeEEEecCCcEEEeccCCCceeecccccCC-ccee--eCCCCCEEEEEECCCcEE-EEeCCCCce
Q 003360 191 LDSSITAMKLI-TGNSFILSSADEDYSLLAKSVPPLLDFETKLKD-GSQS--HSKVKNLFITGHSDGAIN-FWDVSCPLF 265 (826)
Q Consensus 191 h~~~Vt~~~fs-~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g-~V~~--~s~~~~~l~Tgs~DGtVr-iWD~s~~~~ 265 (826)
|...|..++|+ |+++.++.+.++.+.+|+........+ ..|.+ .+.+ |+ +++.|++++.++.+. +||+.+...
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~ 371 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA 371 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEEC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE
T ss_pred cccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEc-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc
Confidence 55678999999 999999998888899997655444444 45565 6666 89 999999999988888 889855442
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
.. + ..|...+..++|+|+++.|++++.++.|++||+.++.. . .....+
T Consensus 372 ~~---l--------~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-----------------~----~~~~~~ 419 (1045)
T 1k32_A 372 EK---F--------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-----------------T----VIERSR 419 (1045)
T ss_dssp EE---C--------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------E----EEEECS
T ss_pred eE---e--------cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce-----------------E----EeccCC
Confidence 11 1 24557899999999999999999999999999984432 1 112246
Q ss_pred cCCeEEEEEccCCCEEEEEecCC----------eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQG----------YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG----------~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
.+.|.+++|||+|++|++++.++ .|++||+.+++.. . ...+...+.++.|++ |+.+|+++
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~-~---l~~~~~~~~~~~~sp------dG~~l~~~ 489 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-A---ATTENSHDYAPAFDA------DSKNLYYL 489 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-E---CSCSSSBEEEEEECT------TSCEEEEE
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE-E---eeCCCcccCCceEcC------CCCEEEEE
Confidence 67789999999999999887754 8999999988733 2 235667788899999 69999999
Q ss_pred ECCCcEEEEECCCCc
Q 003360 416 TKDSSVLVLDSDNGN 430 (826)
Q Consensus 416 s~Dg~V~iwd~~tg~ 430 (826)
+.++...+|+.....
T Consensus 490 s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 490 SYRSLDPSPDRVVLN 504 (1045)
T ss_dssp ESCCCCCEECSSSSC
T ss_pred ecccCCcCcchhccc
Confidence 999999999876443
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.63 E-value=1.4e-13 Score=148.31 Aligned_cols=210 Identities=10% Similarity=0.123 Sum_probs=135.2
Q ss_pred ecccCCCEEEEEEeeCCCeEEEecCC----cEEEeccCCCceeecccccCCccee--eCCCCC-EEEEEECCCc-EEEEe
Q 003360 188 MPFLDSSITAMKLITGNSFILSSADE----DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGA-INFWD 259 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~d~----~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGt-VriWD 259 (826)
+..+..+..+++|+|+++.++++.+. .+.+|+......... ..+.....+ |+|+++ +++++..++. |++|+
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST-IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE-EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE-EECCCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 34444555558999999999965533 899997655443332 222233344 999998 5566677788 99999
Q ss_pred CCC-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 260 VSC-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS-GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 260 ~s~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las-gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
+.. ..+.. ... ........+..++|+|+++++++ +..++.|.+||+.++... . .
T Consensus 158 ~~~~g~~~~---~~~----~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~---------------~-~- 213 (331)
T 3u4y_A 158 IDADGVLFD---TGQ----EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI---------------T-L- 213 (331)
T ss_dssp ECTTCCEEE---EEE----EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC---------------E-E-
T ss_pred ECCCCcEee---cCC----ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc---------------c-e-
Confidence 943 22111 110 01123456899999999996655 456899999999854320 0 0
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccC------CCCCeeEEEEeecccCCCCCc
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASD------ISSGIVSLQFETCSLQGFEKN 410 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~------~~~~V~sl~f~~~~~~~~d~~ 410 (826)
+........+.+++|+|+|+++++++ .++.|.+||+.++++......... .......++|+| |+.
T Consensus 214 --~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp------dg~ 285 (331)
T 3u4y_A 214 --LNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK------TET 285 (331)
T ss_dssp --EEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT------TSS
T ss_pred --eeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC------CCC
Confidence 22223346678999999999776665 578899999999887322211111 111234588988 688
Q ss_pred EEEEEEC-CCcEEEEECCCCc
Q 003360 411 FLVIATK-DSSVLVLDSDNGN 430 (826)
Q Consensus 411 ~l~sgs~-Dg~V~iwd~~tg~ 430 (826)
+|++++. ++.|.+||+.+..
T Consensus 286 ~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 286 KLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEEETTTTEEEEEETTSCE
T ss_pred EEEEecCCCCcEEEEEecCCc
Confidence 8876665 5699999998543
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.63 E-value=3.3e-14 Score=170.45 Aligned_cols=224 Identities=10% Similarity=0.078 Sum_probs=151.2
Q ss_pred cCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCC-----Cceee
Q 003360 153 KSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSV-----PPLLD 227 (826)
Q Consensus 153 ~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~-----~~~~~ 227 (826)
.++.+++||..+- ....+..+...+..++|+|+|+.++.+.++.|.+|+... .....
T Consensus 99 ~~~~i~~~d~~~~------------------~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~ 160 (706)
T 2z3z_A 99 TQGGLVGFDMLAR------------------KVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIA 160 (706)
T ss_dssp ETTEEEEEETTTT------------------EEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEE
T ss_pred ECCEEEEEECCCC------------------ceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEE
Confidence 4478888887541 112234455667888999999999997799999997654 33333
Q ss_pred cccccCCc--------------cee--eCCCCCEEEEEE---------------------------------CCCcEEEE
Q 003360 228 FETKLKDG--------------SQS--HSKVKNLFITGH---------------------------------SDGAINFW 258 (826)
Q Consensus 228 ~~~~h~g~--------------V~~--~s~~~~~l~Tgs---------------------------------~DGtVriW 258 (826)
....+... +.+ |+|+|++|++++ .++.|++|
T Consensus 161 ~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~ 240 (706)
T 2z3z_A 161 VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIY 240 (706)
T ss_dssp SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEE
T ss_pred eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEE
Confidence 31222222 244 999999999998 45789999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-----MVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-----~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
|+.+..... +. ....|...|.+++|+|+++.|++++.++ .|.+||+.++..
T Consensus 241 d~~~~~~~~---~~-----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~---------------- 296 (706)
T 2z3z_A 241 HLATGKTVY---LQ-----TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF---------------- 296 (706)
T ss_dssp ETTTTEEEE---CC-----CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE----------------
T ss_pred ECCCCceEe---ec-----cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce----------------
Confidence 996555312 11 0013556799999999999999988775 899999875421
Q ss_pred eEEEEEEEEeecc---CCeEEEEEcc--CCCEEEEEecCCeEEEEecC-CCeeEEeeecccCCCCCeeE-EEEeecccCC
Q 003360 334 SHIIHSVKVMKIN---GSIISLNMNR--NSQHLAVGSDQGYVYLLDTE-GPTVLYQKHIASDISSGIVS-LQFETCSLQG 406 (826)
Q Consensus 334 ~~~~~~~~~~~~~---~~V~~l~~s~--~g~~lasGs~dG~V~vwD~~-~~~~l~~~~~~~~~~~~V~s-l~f~~~~~~~ 406 (826)
... +...... ..+.+++|+| +|+++++++.||.++||++. .+..+... ..+...+.+ +.|++
T Consensus 297 ~~~---~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l---~~~~~~v~~~~~~sp----- 365 (706)
T 2z3z_A 297 VRT---LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV---TKGEWEVTNFAGFDP----- 365 (706)
T ss_dssp EEE---EEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC---CCSSSCEEEEEEECT-----
T ss_pred eeE---EEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec---CCCCeEEEeeeEEcC-----
Confidence 000 1111111 1246789999 99999999999999999886 45544222 345566776 78998
Q ss_pred CCCcEEEEEEC-CC----cEEEEECCCCc
Q 003360 407 FEKNFLVIATK-DS----SVLVLDSDNGN 430 (826)
Q Consensus 407 ~d~~~l~sgs~-Dg----~V~iwd~~tg~ 430 (826)
|+..|++++. ++ .|..||..+++
T Consensus 366 -dg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 366 -KGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp -TSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred -CCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 5777766554 44 68888888766
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.63 E-value=5.1e-13 Score=143.96 Aligned_cols=234 Identities=8% Similarity=0.024 Sum_probs=149.2
Q ss_pred EEEe-ccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-C-CcEEEeccC--C
Q 003360 148 FLLL-GKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-D-EDYSLLAKS--V 222 (826)
Q Consensus 148 liv~-~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d-~~i~~w~~~--~ 222 (826)
+++. ..+|.+.+||...- ..........|...+.+++|+|+++.+++++ + +.+.+|+.. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~ 71 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHE---------------GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD 71 (343)
T ss_dssp EEEEEGGGTEEEEEEECTT---------------SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEEeCCCCCeEEEEEECCC---------------CcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC
Confidence 4444 66899999987420 0011122234667788999999999888877 4 899999654 2
Q ss_pred Cceeec-ccccCCccee--eCCCCCEEEEEE-CCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCCCE
Q 003360 223 PPLLDF-ETKLKDGSQS--HSKVKNLFITGH-SDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 297 (826)
Q Consensus 223 ~~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs-~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~ 297 (826)
...... .....+.+.. |+|++++|++++ .++.|++||+. +.....+..+. ....+.+++|+|+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~s~dg~~ 142 (343)
T 1ri6_A 72 GALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE---------GLDGCHSANISPDNRT 142 (343)
T ss_dssp CCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC---------CCTTBCCCEECTTSSE
T ss_pred CceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc---------CCCCceEEEECCCCCE
Confidence 222211 1122234444 999999776665 48999999993 22221222221 2246889999999998
Q ss_pred EEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEe-cCCeEEEEe
Q 003360 298 LVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGS-DQGYVYLLD 374 (826)
Q Consensus 298 Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD 374 (826)
|++++ .++.|.+||+..... ...+...... .....+.+++|+|+|+++++++ .++.|.+||
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~ 206 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGH----------------LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE 206 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC----------------EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEecCCCCEEEEEEecCCCc----------------eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 88887 899999999974111 1000000111 1234688999999999776554 889999999
Q ss_pred cCC--CeeE--Eeee-cccC--CCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECC
Q 003360 375 TEG--PTVL--YQKH-IASD--ISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSD 427 (826)
Q Consensus 375 ~~~--~~~l--~~~~-~~~~--~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~ 427 (826)
+.. +... .... ...+ ....+..++|++ ++.+|+++. .++.|.+|+..
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~------dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITP------DGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT------TSSEEEEEETTTTEEEEEEEC
T ss_pred ecCCCCcEEEEeeccccCccccccCCccceEECC------CCCEEEEEecCCCEEEEEEEc
Confidence 953 4332 1111 1111 133566899998 587777554 78999999998
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.62 E-value=6e-13 Score=143.33 Aligned_cols=230 Identities=9% Similarity=0.067 Sum_probs=156.5
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCC
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVP 223 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~ 223 (826)
..++.....+.|.+||..+- .....+..+...+ .++|+|+++.++++. ++.+.+|+....
T Consensus 11 ~~~v~~~~~~~v~~~d~~~~-----------------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~ 72 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDTL-----------------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE 72 (331)
T ss_dssp EEEEEEGGGTEEEEEETTTC-----------------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS
T ss_pred EEEEEecCCCeEEEEeCccc-----------------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC
Confidence 44556667889999997651 1122234455566 999999999777655 778999976554
Q ss_pred ce-eecccccCCcce-e-eCCCCCEEEEEECCC---cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE
Q 003360 224 PL-LDFETKLKDGSQ-S-HSKVKNLFITGHSDG---AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 297 (826)
Q Consensus 224 ~~-~~~~~~h~g~V~-~-~s~~~~~l~Tgs~DG---tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~ 297 (826)
.. ......+.+... . ++|++++++++..++ .|++||+..... +..+. ....+.+++|+|++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~--~~~~~---------~~~~~~~~~~spdg~~ 141 (331)
T 3u4y_A 73 PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF--ISTIP---------IPYDAVGIAISPNGNG 141 (331)
T ss_dssp SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE--EEEEE---------CCTTEEEEEECTTSSC
T ss_pred ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe--EEEEE---------CCCCccceEECCCCCE
Confidence 43 322234555555 3 999999988666653 899999955442 11222 2345689999999985
Q ss_pred EE-EEeCCCc-EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE-ecCCeEEEEe
Q 003360 298 LV-SGDQSGM-VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG-SDQGYVYLLD 374 (826)
Q Consensus 298 La-sgs~dg~-V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG-s~dG~V~vwD 374 (826)
|+ ++..++. |.+|++..... ..... .........+.+++|+|+|++++++ ..++.|++||
T Consensus 142 l~~~~~~~~~~i~~~~~~~~g~----------------~~~~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 204 (331)
T 3u4y_A 142 LILIDRSSANTVRRFKIDADGV----------------LFDTG-QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILE 204 (331)
T ss_dssp EEEEEETTTTEEEEEEECTTCC----------------EEEEE-EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCceEEEEEECCCCc----------------EeecC-CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 55 4556688 99999973211 11100 1112234458999999999966554 5689999999
Q ss_pred cCCCee---EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECCCCce
Q 003360 375 TEGPTV---LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNGNM 431 (826)
Q Consensus 375 ~~~~~~---l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~tg~~ 431 (826)
+.+++. +.... ....+..++|+| |+.+|++++ .++.|.+||..+++.
T Consensus 205 ~~~~~~~~~~~~~~----~~~~~~~~~~sp------dg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 205 TQNPENITLLNAVG----TNNLPGTIVVSR------DGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp CSSTTSCEEEEEEE----CSSCCCCEEECT------TSSEEEEECSSEEEEEEEETTTTEE
T ss_pred CCCCcccceeeecc----CCCCCceEEECC------CCCEEEEEEcCCCEEEEEECCCCce
Confidence 998887 53333 235677899998 688777665 477899999998876
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.61 E-value=7.8e-13 Score=143.74 Aligned_cols=241 Identities=10% Similarity=0.121 Sum_probs=153.3
Q ss_pred EEEecc---CccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCC
Q 003360 148 FLLLGK---SGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSV 222 (826)
Q Consensus 148 liv~~~---~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~ 222 (826)
+++... .+.|++||...- .......+..+...+..++|+|+++.+++++ ++.+.+|+...
T Consensus 53 l~~~~~~~~~~~v~~~~~~~g---------------~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 53 LYSVDKEDDEGGIAAWQIDGQ---------------TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp EEEEEEETTEEEEEEEEEETT---------------EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred EEEEEecCCCceEEEEEecCC---------------cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence 555554 589999987430 0011122345667788999999999888876 78899996531
Q ss_pred -Cceeec-ccccC----------Cccee--eCCCCCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCeE
Q 003360 223 -PPLLDF-ETKLK----------DGSQS--HSKVKNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLT 287 (826)
Q Consensus 223 -~~~~~~-~~~h~----------g~V~~--~s~~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~ 287 (826)
...... ...+. ..+.+ |+|++++++++..++.|++||+. ...+..+..+. ...+..+.
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-------~~~g~~p~ 190 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT-------MEAGFGPR 190 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE-------CCTTCCEE
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE-------cCCCCCCc
Confidence 111111 11111 12444 99999988888889999999995 44432222111 11224678
Q ss_pred EEEEeCCCCEEEE-EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec----cCCeEEEEEccCCCEE-
Q 003360 288 ALYYDGTSRVLVS-GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI----NGSIISLNMNRNSQHL- 361 (826)
Q Consensus 288 ~l~fsp~~~~Las-gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~----~~~V~~l~~s~~g~~l- 361 (826)
.++|+|++++|++ +..++.|.+|++..... .+. .+..+..... ...+..++|+|+|++|
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g----~~~-----------~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~ 255 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTG----AFT-----------QLGIVKTIPADYTAHNGAAAIRLSHDGHFLY 255 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTT----EEE-----------EEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCC----ceE-----------EeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence 8999999996665 56788999999974211 000 0000111010 1348899999999977
Q ss_pred EEEecCCeEEEEecCC-C--eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC-CcEEEE--ECCCCceEEe
Q 003360 362 AVGSDQGYVYLLDTEG-P--TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD-SSVLVL--DSDNGNMLST 434 (826)
Q Consensus 362 asGs~dG~V~vwD~~~-~--~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D-g~V~iw--d~~tg~~i~~ 434 (826)
+++..++.|.+||+.. + +.+... ..+...+..++|+| |+.+|++++.+ +.|.+| |..+|+....
T Consensus 256 v~~~~~~~v~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~sp------dg~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 256 VSNRGYNTLAVFAVTADGHLTLIQQI---STEGDFPRDFDLDP------TEAFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp EEEETTTEEEEEEECGGGCEEEEEEE---ECSSSCCCEEEECT------TSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred EEeCCCCEEEEEEECCCCcEEEeEEE---ecCCCCcCeEEECC------CCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 4556689999999963 2 233222 23445678999999 68888888765 899999 6677876643
No 143
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.61 E-value=1.7e-14 Score=162.68 Aligned_cols=178 Identities=13% Similarity=0.149 Sum_probs=125.0
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCcee------eeeecccccccccccCCCCeEEEEEeCCCCEEE----EEeCCCcEE
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFL------LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV----SGDQSGMVR 308 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~------~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La----sgs~dg~V~ 308 (826)
+++++.++++|+.|| |++|+....... ............ ..+...|++++|+|++++|+ +|+.|+.|+
T Consensus 44 vs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~ 121 (434)
T 2oit_A 44 VSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIA 121 (434)
T ss_dssp EETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEE
T ss_pred EecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEE
Confidence 889999999999998 999886210000 000000000000 12446899999999999999 788999999
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEEE-EeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeec
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK-VMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~-~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~ 386 (826)
|||+......... ....... +. ...|...|++++|+|+ +.+||+|+.||+|++||++++..+...
T Consensus 122 iwd~~~~~~~~~~--------~~~~~~~---~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~-- 188 (434)
T 2oit_A 122 FFDVRTFSNEAKQ--------QKRPFAY---HKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT-- 188 (434)
T ss_dssp EEEHHHHHCTTCS--------SCCCSEE---EECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE--
T ss_pred EEEccccccCCcC--------Ccceeee---eeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec--
Confidence 9998743100000 0000000 11 2236788999999998 789999999999999999998765333
Q ss_pred ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccC
Q 003360 387 ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHP 439 (826)
Q Consensus 387 ~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~ 439 (826)
.+|...|.+++|+| ++.+|++|+.||+|++||.+ ++....+..+.
T Consensus 189 -~~~~~~v~~v~wsp------dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~ 233 (434)
T 2oit_A 189 -LPSTVAVTSVCWSP------KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPP 233 (434)
T ss_dssp -ECGGGCEEEEEECT------TSSCEEEEETTSCEEEECTT-CCEEEEECCCT
T ss_pred -cCCCCceeEEEEcC------CCCEEEEEcCCCcEEEEccC-CcccccccCCc
Confidence 25778999999999 59999999999999999998 77666654443
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.60 E-value=1e-12 Score=142.56 Aligned_cols=214 Identities=12% Similarity=0.127 Sum_probs=148.7
Q ss_pred CCCEEEEEEeeCCCeEEEec--------CCcEEEeccCCCceeecccccCCccee--eCCCCC-EEEEEECCCcEEEEeC
Q 003360 192 DSSITAMKLITGNSFILSSA--------DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKN-LFITGHSDGAINFWDV 260 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~--------d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~-~l~Tgs~DGtVriWD~ 260 (826)
...+..++|+++++.++++. ++.+.+|+......... ..+...+.. ++++++ +++++..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-IHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-EEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-EecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 35678899999999998876 45789997655443332 222233333 999998 5556666899999999
Q ss_pred CCCceeeeeeccccccccc-ccCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 261 SCPLFLLILSLKQQSEKDF-SLSGIPLTALYYDGTSRVLVSGD--QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~-~~h~~~V~~l~fsp~~~~Lasgs--~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
..... +..+........ ......+.+++|+|+++.+++++ .++.|.+||..+...
T Consensus 119 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~-------------------- 176 (353)
T 3vgz_A 119 KTGEV--KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL-------------------- 176 (353)
T ss_dssp TTCCE--EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE--------------------
T ss_pred CCCee--EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce--------------------
Confidence 54442 122221000000 00012378999999999887776 478899999874322
Q ss_pred EEEEEee-ccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc-CCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 338 HSVKVMK-INGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS-DISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 338 ~~~~~~~-~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~-~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
..... +...+.+++|+|+|+++++++.++.|.+||+.+++.+....... ++...+..+.|++ ++.+++++
T Consensus 177 --~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~------dg~~l~~~ 248 (353)
T 3vgz_A 177 --KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT------ARQRAFIT 248 (353)
T ss_dssp --EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET------TTTEEEEE
T ss_pred --EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC------CCCEEEEE
Confidence 22222 33447889999999999999999999999999999886555422 2455678899999 58877777
Q ss_pred EC-CCcEEEEECCCCceEEeee
Q 003360 416 TK-DSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 416 s~-Dg~V~iwd~~tg~~i~~~~ 436 (826)
+. ++.|.+||..+++.+..+.
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEE
Confidence 65 4899999999999887764
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.58 E-value=3.1e-12 Score=138.62 Aligned_cols=186 Identities=12% Similarity=0.034 Sum_probs=129.9
Q ss_pred EEEEEEeeCCCeEEEec---CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeee
Q 003360 195 ITAMKLITGNSFILSSA---DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLIL 269 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~ 269 (826)
+..++|+|+++.++++. ++.|.+|+............+...+.+ ++|++++++++..|+.|.+||....... .
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~--~ 220 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKIL--S 220 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEE--E
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEE--E
Confidence 67899999999887754 677999976654433321113333444 9999999999999999999999555421 1
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCC
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGS 348 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~ 348 (826)
.+... ...+...+..++|+|+++.+++++. ++.|.+||..++.. +.......
T Consensus 221 ~~~~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~----------------------~~~~~~~~- 273 (353)
T 3vgz_A 221 RKKLL----DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI----------------------LAKVAAPE- 273 (353)
T ss_dssp EEECC----CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE----------------------EEEEECSS-
T ss_pred EEEcC----CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----------------------EEEEEcCC-
Confidence 22210 0123457889999999997777665 48999999974432 11112222
Q ss_pred eEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 349 IISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 349 V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
..+++|+|+|+++++++ .++.|.+||+.+++++..... ...+.+++|++ |+.+|+++..++
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~------dg~~l~v~~~~~ 335 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT----PTHPNSLALSA------DGKTLYVSVKQK 335 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC----CSEEEEEEECT------TSCEEEEEEECC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec----CCCCCeEEEcC------CCCEEEEEEccc
Confidence 25689999999766655 689999999999988855432 33678899998 688888777664
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.58 E-value=5.7e-13 Score=143.19 Aligned_cols=250 Identities=8% Similarity=0.005 Sum_probs=165.5
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCC--CEEEEEEeeCCCeEEEe-c-CCcEEEeccCC
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDS--SITAMKLITGNSFILSS-A-DEDYSLLAKSV 222 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~--~Vt~~~fs~~~~~l~~~-~-d~~i~~w~~~~ 222 (826)
.+++...++.|.+||..+.+ ....+..... .+..++|+|+++.++.+ . ++.|.+|+...
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~-----------------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 65 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMA-----------------VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT 65 (337)
T ss_dssp EEEEEETTTEEEEEETTTTE-----------------EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EEEEcCCCCeEEEEECCCCc-----------------EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence 46677788999999986510 1111222211 46788999999877654 4 77899997654
Q ss_pred Ccee-eccccc----CCccee--eCCCCCEEEEEE------------CCCcEEEEeCCCCceeeeeecccccccccccCC
Q 003360 223 PPLL-DFETKL----KDGSQS--HSKVKNLFITGH------------SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG 283 (826)
Q Consensus 223 ~~~~-~~~~~h----~g~V~~--~s~~~~~l~Tgs------------~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~ 283 (826)
.... .+..++ ...+.+ ++|++++|+++. .|+.|.+||+..... +..+. .+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--~~~~~---------~~ 134 (337)
T 1pby_B 66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR--RKAFE---------AP 134 (337)
T ss_dssp CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE--EEEEE---------CC
T ss_pred CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE--EEEEe---------CC
Confidence 3333 222222 113444 999999888886 689999999955442 11122 12
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcc----ccceEEEeecCCCCe-------------------------
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI----ENSFLSFTGSKKGNS------------------------- 334 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~----~~~~~~i~~s~~~~~------------------------- 334 (826)
..+.+++|+|++++|+++ ++.|.+||+.++.... ......+.+++++..
T Consensus 135 ~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 135 RQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp SSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred CCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence 457789999999988888 6889999998652210 000000011222110
Q ss_pred --------EEEEE--------EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEE
Q 003360 335 --------HIIHS--------VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQ 398 (826)
Q Consensus 335 --------~~~~~--------~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 398 (826)
..+.. +....+...+.+++|+|+|++++++ ++.|++||+.+++.+..... ...+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----~~~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL----PHSYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC----CCceeeEE
Confidence 00000 1222334567889999999999888 78999999999988754432 24578899
Q ss_pred EeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 399 FETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
|++ |+.+|++++.++.|++||..+++.+..+...
T Consensus 287 ~s~------dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 287 VST------DGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp ECT------TSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred ECC------CCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 998 6889999999999999999999988887544
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.58 E-value=4.2e-14 Score=169.87 Aligned_cols=206 Identities=7% Similarity=0.070 Sum_probs=130.9
Q ss_pred ccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCcc------------------ee--eCCCCCEEEEE
Q 003360 190 FLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGS------------------QS--HSKVKNLFITG 249 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V------------------~~--~s~~~~~l~Tg 249 (826)
.|...+..++|+|||+.++.++++.|.+|+............+..++ .+ |+|+|+.|+++
T Consensus 111 ~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~ 190 (723)
T 1xfd_A 111 VSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (723)
T ss_dssp CCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred cccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence 45556888999999999999988889999765444333322223322 44 99999999998
Q ss_pred ECCC----------------------------------cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCC
Q 003360 250 HSDG----------------------------------AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS 295 (826)
Q Consensus 250 s~DG----------------------------------tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~ 295 (826)
+.|+ +|++||+.+... ...+... ..+..+...|..++|+||+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~l~~~--~~~~~~~~~~~~~~~SpDg 266 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPP--DDPRMREYYITMVKWATST 266 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCC--CCGGGSSEEEEEEEESSSS
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce--eEEeeCC--ccCCCccceeEEEEEeCCC
Confidence 8654 788898844331 0112210 0112235679999999999
Q ss_pred CEEEEEeC----CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCe----EEEEEccCCCEEEE--Ee
Q 003360 296 RVLVSGDQ----SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSI----ISLNMNRNSQHLAV--GS 365 (826)
Q Consensus 296 ~~Lasgs~----dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V----~~l~~s~~g~~las--Gs 365 (826)
++|++.+. +..|.+||+.++... . +....+.+.+ .+++|+|+|+.|++ +.
T Consensus 267 ~~l~~~~~~~~~~~~i~~~d~~~g~~~-----------------~---~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 326 (723)
T 1xfd_A 267 KVAVTWLNRAQNVSILTLCDATTGVCT-----------------K---KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (723)
T ss_dssp EEEEEEEETTSCEEEEEEEETTTCCEE-----------------E---EEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred eEEEEEEcCCCCeEEEEEEeCCCCcce-----------------E---EEEeccCCEEeccCCCceEcCCCCeEEEEEec
Confidence 98877653 357999998754321 0 1111222333 37899999997775 45
Q ss_pred cCC------eEEEEe-cCCCe--eEEeeecccCCCCCeeE-EEEeecccCCCCCcEEEEEECC---CcEEEEECCC
Q 003360 366 DQG------YVYLLD-TEGPT--VLYQKHIASDISSGIVS-LQFETCSLQGFEKNFLVIATKD---SSVLVLDSDN 428 (826)
Q Consensus 366 ~dG------~V~vwD-~~~~~--~l~~~~~~~~~~~~V~s-l~f~~~~~~~~d~~~l~sgs~D---g~V~iwd~~t 428 (826)
.+| .|.+|| ..++. +. ..+. .....+.. +.|+| |+..|+..+.+ +.+++|++..
T Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~--~~l~-~~~~~~~~~~~~sp------dg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 327 PQGGRGKFYHITVSSSQPNSSNDNI--QSIT-SGDWDVTKILAYDE------KGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp CCSSSSCEEEEEEECSSCCSSSCCC--CBSC-CSSSCEEEEEEEET------TTTEEEEEESSSCTTCCEEEEECS
T ss_pred ccCCCcceeEEEEEeccCCCCccce--eEee-cCCeEEEeeeEEcC------CCCEEEEEEcCCCCcceEEEEEeC
Confidence 677 577788 34443 02 1121 22334444 68998 68888766655 7889998764
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.55 E-value=3.9e-13 Score=161.42 Aligned_cols=218 Identities=12% Similarity=0.011 Sum_probs=144.0
Q ss_pred EEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCC---ccee--eCCCCCEEEEEECC---------CcEEEEeC
Q 003360 195 ITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKD---GSQS--HSKVKNLFITGHSD---------GAINFWDV 260 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g---~V~~--~s~~~~~l~Tgs~D---------GtVriWD~ 260 (826)
+..++|+|+|++++++.|+.+++|+............|.. .|.+ |+|+|++|++++.| +.|++||+
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~ 98 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence 4567899999987764599999997665444443244443 3666 99999999999875 77889999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeec-CCCCeEEEEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS-KKGNSHIIHS 339 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s-~~~~~~~~~~ 339 (826)
.+..... +.. ...|...|..++|+|+++.||.++. +.|++|++.++... .+... ..... ..+
T Consensus 99 ~~~~~~~---l~~-----~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~------~~~~~~~~~~~--~~g 161 (723)
T 1xfd_A 99 PHGDPQS---LDP-----PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAI------RVVSTGKEGVI--YNG 161 (723)
T ss_dssp SSCCCEE---CCC-----TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCE------EEECCCBTTTE--EEE
T ss_pred CCCceEe---ccC-----CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceE------EEecCCCCCce--ECc
Confidence 5544211 221 1234456889999999999999886 78999998754321 01000 00000 000
Q ss_pred EEE----eeccCCeEEEEEccCCCEEEEEecCC----------------------------------eEEEEecCCCeeE
Q 003360 340 VKV----MKINGSIISLNMNRNSQHLAVGSDQG----------------------------------YVYLLDTEGPTVL 381 (826)
Q Consensus 340 ~~~----~~~~~~V~~l~~s~~g~~lasGs~dG----------------------------------~V~vwD~~~~~~l 381 (826)
+.. ....+.+.+++|||||++||+++.|+ .|++||+.++++.
T Consensus 162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~ 241 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD 241 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC
T ss_pred ccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee
Confidence 000 00012348899999999999987653 7999999888754
Q ss_pred Eeeecc---cCCCCCeeEEEEeecccCCCCCcEEEEEEC----CCcEEEEECCCCceEEee
Q 003360 382 YQKHIA---SDISSGIVSLQFETCSLQGFEKNFLVIATK----DSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 382 ~~~~~~---~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~----Dg~V~iwd~~tg~~i~~~ 435 (826)
...... ..+...+.++.|+| |+.+|++.+. +..|++||..+|++...+
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~Sp------Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 242 LEMMPPDDPRMREYYITMVKWAT------STKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp EECCCCCCGGGSSEEEEEEEESS------SSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred EEeeCCccCCCccceeEEEEEeC------CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence 222211 11356788999999 6888877653 357999999998876553
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.53 E-value=1.6e-12 Score=140.47 Aligned_cols=254 Identities=7% Similarity=-0.010 Sum_probs=161.4
Q ss_pred CCceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccC-CCEEEEEEeeCCCeEEEe-c-CCcEEEecc
Q 003360 144 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLD-SSITAMKLITGNSFILSS-A-DEDYSLLAK 220 (826)
Q Consensus 144 ~~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~Vt~~~fs~~~~~l~~~-~-d~~i~~w~~ 220 (826)
+...+++...++.|++||..+- .....++.+. ..+..++|+|+++.++.+ . ++.|.+|+.
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~-----------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~ 72 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASD-----------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 72 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTT-----------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCEEEEEeCCCCeEEEEECCCC-----------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeC
Confidence 3455666778899999998651 0111223222 146788999999877654 4 788999976
Q ss_pred CCCcee-ecccccC-----Cccee--eCCCCCEEEEEECC------------CcEEEEeCCCCc-eeeeeeccccccccc
Q 003360 221 SVPPLL-DFETKLK-----DGSQS--HSKVKNLFITGHSD------------GAINFWDVSCPL-FLLILSLKQQSEKDF 279 (826)
Q Consensus 221 ~~~~~~-~~~~~h~-----g~V~~--~s~~~~~l~Tgs~D------------GtVriWD~s~~~-~~~i~~l~~~~~~~~ 279 (826)
...... .+..++. ..+.+ |+|++++|++++.+ +.|.+||+.... ...+...
T Consensus 73 ~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------- 144 (349)
T 1jmx_B 73 DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-------- 144 (349)
T ss_dssp TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--------
T ss_pred CCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--------
Confidence 543332 2222221 12334 99999999998876 999999994322 1111111
Q ss_pred ccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc----c-------------------------ceEEEeecC
Q 003360 280 SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE----N-------------------------SFLSFTGSK 330 (826)
Q Consensus 280 ~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~----~-------------------------~~~~i~~s~ 330 (826)
.+...+.+++|+|+++ +++++. .|.+||..++..... . ....+.++.
T Consensus 145 -~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (349)
T 1jmx_B 145 -PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK 220 (349)
T ss_dssp -ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-
T ss_pred -cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC
Confidence 1234688999999999 666544 499999876532110 0 001111111
Q ss_pred CCCe--------E----------EEEEEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCC
Q 003360 331 KGNS--------H----------IIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS 391 (826)
Q Consensus 331 ~~~~--------~----------~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~ 391 (826)
++.. . .+..+........+.+++|+| +|++++++ ++.|.+||+.+++.+..... .
T Consensus 221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----~ 294 (349)
T 1jmx_B 221 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL----D 294 (349)
T ss_dssp ------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC----S
T ss_pred CCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC----C
Confidence 1100 0 000011122334678999999 99999888 88999999999988754432 2
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
..+.+++|++ |+.+|++++.++.|++||..+++.+..+...
T Consensus 295 ~~~~~~~~s~------dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 295 HTYYCVAFDK------KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SCCCEEEECS------SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCccceEECC------CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 3467899998 5888888888999999999999988876443
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.52 E-value=9.6e-12 Score=135.97 Aligned_cols=185 Identities=11% Similarity=0.108 Sum_probs=119.2
Q ss_pred cCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCc-------e------eecccccCCccee--eCCCCCEEEEEE-CC
Q 003360 191 LDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPP-------L------LDFETKLKDGSQS--HSKVKNLFITGH-SD 252 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~-------~------~~~~~~h~g~V~~--~s~~~~~l~Tgs-~D 252 (826)
+.+.+.+++|+|+++.++++. ++.+.+|+..... + ......+..+... |+|++++++++. .+
T Consensus 153 ~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 232 (361)
T 3scy_A 153 TMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG 232 (361)
T ss_dssp SSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred CCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence 345578899999999776654 7889999543211 1 1112233334444 999999777766 69
Q ss_pred CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEeCCCCCccccceEEEeecC
Q 003360 253 GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS--GMVRIFKLKYEPHAIENSFLSFTGSK 330 (826)
Q Consensus 253 GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d--g~V~iwd~~~~~~~~~~~~~~i~~s~ 330 (826)
+.|++||+....+..+..+.. ...+...+..++|+|++++|+++..+ +.|.+|++....
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~-----~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~-------------- 293 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAA-----DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN-------------- 293 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEES-----CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT--------------
T ss_pred CeEEEEEecCCceEEeEEEec-----CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC--------------
Confidence 999999995444323222221 11233567899999999998777665 899999996221
Q ss_pred CCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEE--ecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 331 KGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLL--DTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vw--D~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
+.... +........+.+++|+|+|++|++++ .++.|.+| |..++++..... ..+...+.|+.|.
T Consensus 294 -g~~~~---~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~--~~~~~~p~~v~~~ 360 (361)
T 3scy_A 294 -GTLTK---VGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK--DIKVDKPVCLKFV 360 (361)
T ss_dssp -CCEEE---EEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC--CEECSSEEEEEEE
T ss_pred -CcEEE---eeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce--eeeCCCCeEEEEc
Confidence 11111 22222234688999999999888887 67899995 555676653221 1233467888775
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.52 E-value=3.3e-12 Score=152.98 Aligned_cols=216 Identities=9% Similarity=-0.033 Sum_probs=141.3
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC-----Cce
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC-----PLF 265 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~-----~~~ 265 (826)
..|++++|+|+ ..++.+.++.+.+|+........+ ..+.+.+.+ |+|+|+.|+++ .|+.|++||+.+ ...
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 56999999999 777777789999998765544444 345556655 99999999985 789999999954 332
Q ss_pred eeeeecccccc----cccccCCCCeEEEEEeCCCCEEEEEe---------------------------------CCCcEE
Q 003360 266 LLILSLKQQSE----KDFSLSGIPLTALYYDGTSRVLVSGD---------------------------------QSGMVR 308 (826)
Q Consensus 266 ~~i~~l~~~~~----~~~~~h~~~V~~l~fsp~~~~Lasgs---------------------------------~dg~V~ 308 (826)
..+........ .....+...+.+++|+||++.|++++ .+..|.
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 11110000000 00000112368999999999999987 346788
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecCC-----eEEEEecCCC-eeE
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQG-----YVYLLDTEGP-TVL 381 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~dG-----~V~vwD~~~~-~~l 381 (826)
+||+.++... . +... .+...+.+++|+|+|++|++++.++ .|++||+.++ .+.
T Consensus 239 ~~d~~~~~~~-----------------~---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~ 298 (706)
T 2z3z_A 239 IYHLATGKTV-----------------Y---LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR 298 (706)
T ss_dssp EEETTTTEEE-----------------E---CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE
T ss_pred EEECCCCceE-----------------e---eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee
Confidence 8887643210 0 1111 2345589999999999999988776 8999999988 333
Q ss_pred Eeeec-ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC-CCceEEee
Q 003360 382 YQKHI-ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD-NGNMLSTN 435 (826)
Q Consensus 382 ~~~~~-~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~-tg~~i~~~ 435 (826)
..... .......+.++.|+|. .|+.++++++.|+.+++|... +++.+..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~sp~----~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l 350 (706)
T 2z3z_A 299 TLFVETDKHYVEPLHPLTFLPG----SNNQFIWQSRRDGWNHLYLYDTTGRLIRQV 350 (706)
T ss_dssp EEEEEECSSCCCCCSCCEECTT----CSSEEEEEECTTSSCEEEEEETTSCEEEEC
T ss_pred EEEEccCCCeECccCCceeecC----CCCEEEEEEccCCccEEEEEECCCCEEEec
Confidence 11111 0111123456788771 037889999999998888775 56666554
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.51 E-value=8.5e-11 Score=128.39 Aligned_cols=212 Identities=10% Similarity=0.095 Sum_probs=132.9
Q ss_pred cccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCC-ceeec--cccc-----------CCccee--eCCCCCEEEE-E
Q 003360 189 PFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVP-PLLDF--ETKL-----------KDGSQS--HSKVKNLFIT-G 249 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~-~~~~~--~~~h-----------~g~V~~--~s~~~~~l~T-g 249 (826)
+.+......+++ +++.++++. ++.+.+|+.... .+... ...+ ...+.+ |+|++++|++ +
T Consensus 96 ~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 173 (361)
T 3scy_A 96 KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD 173 (361)
T ss_dssp ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence 334456666776 888888765 788999964321 11111 0111 112233 9999995554 4
Q ss_pred ECCCcEEEEeCCCCc-------eeee---eecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCc
Q 003360 250 HSDGAINFWDVSCPL-------FLLI---LSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHA 318 (826)
Q Consensus 250 s~DGtVriWD~s~~~-------~~~i---~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~ 318 (826)
..++.|++|++.... +... .... ..+...+..++|+|+++++++++ .++.|.+|++..+..
T Consensus 174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~- 245 (361)
T 3scy_A 174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFK-------VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML- 245 (361)
T ss_dssp TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-------CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-
T ss_pred CCCCEEEEEEEcCCCCcccccceeeccccccee-------cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-
Confidence 558999999984222 2110 0111 12345678999999999888777 689999999973321
Q ss_pred cccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecC--CeEEEEecC--CCeeEEeeecccCCCCC
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQ--GYVYLLDTE--GPTVLYQKHIASDISSG 393 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~d--G~V~vwD~~--~~~~l~~~~~~~~~~~~ 393 (826)
. .+..+... .+...+.+++|+|+|++|+++..+ +.|.+|++. +++........ . ...
T Consensus 246 -----~-----------~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~-g~~ 307 (361)
T 3scy_A 246 -----D-----------EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-T-GIH 307 (361)
T ss_dssp -----E-----------EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-C-SSC
T ss_pred -----E-----------EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-C-CCC
Confidence 0 00001111 112346899999999988776654 899999995 44533222221 1 456
Q ss_pred eeEEEEeecccCCCCCcEEEEEE-CCCcEEEE--ECCCCceEEe
Q 003360 394 IVSLQFETCSLQGFEKNFLVIAT-KDSSVLVL--DSDNGNMLST 434 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iw--d~~tg~~i~~ 434 (826)
+..++|+| |+.+|++++ .++.|.+| |..+|+....
T Consensus 308 ~~~~~~sp------dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 308 PRNFIITP------NGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp CCEEEECT------TSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred CceEEECC------CCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 78899999 689888888 56889995 6667876644
No 153
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.50 E-value=4.3e-12 Score=132.99 Aligned_cols=180 Identities=7% Similarity=0.035 Sum_probs=128.0
Q ss_pred CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCC-CceeeeeecccccccccccC-CCCeE
Q 003360 212 DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSC-PLFLLILSLKQQSEKDFSLS-GIPLT 287 (826)
Q Consensus 212 d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~~l~~~~~~~~~~h-~~~V~ 287 (826)
++.+.+|+........+ ..|.+.+.+ |+|++++|++++ ++.|++||+.. ..... +. ..+ ...|.
T Consensus 21 ~~~i~~~d~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~---~~-------~~~~~~~~~ 88 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVV-WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK---VD-------TGFATICNN 88 (297)
T ss_dssp CEEEEEEETTTTEEEEE-EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE---CC-------CTTCCCBCS
T ss_pred ceeEEEEeCCCCceeee-ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE---ec-------ccccccccc
Confidence 78899998766555544 567888888 999999999987 88999999955 44211 11 122 36788
Q ss_pred EEEEeCCCCEEEEEe--CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEE-EE
Q 003360 288 ALYYDGTSRVLVSGD--QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLA-VG 364 (826)
Q Consensus 288 ~l~fsp~~~~Lasgs--~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~la-sG 364 (826)
+++|+|+++.|++++ .++.+.||.+..... . .........+.+++|+|++++|+ ++
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~---------------~------~~~~~~~~~~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGG---------------T------PRLMTKNLPSYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCC---------------C------CEECCSSSSEEEEEECTTSSEEEEEE
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCC---------------c------eEEeecCCCccceEECCCCCEEEEEE
Confidence 999999999999998 446777777753211 0 11222234588999999999887 78
Q ss_pred ecCCeEEEEecC--CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECC-CCceEEe
Q 003360 365 SDQGYVYLLDTE--GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSD-NGNMLST 434 (826)
Q Consensus 365 s~dG~V~vwD~~--~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~-tg~~i~~ 434 (826)
+.++.++||++. ++... ....+...+.++.|+| ++.+|++++ .++.+.+|+.. .+..+..
T Consensus 148 ~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~s~------dg~~l~~~~~~~~~~~i~~~~~~~~~~~~ 211 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVET----RLTHGEGRNDGPDYSP------DGRWIYFNSSRTGQMQIWRVRVDGSSVER 211 (297)
T ss_dssp EETTEEEEEEEETTTCCEE----ECCCSSSCEEEEEECT------TSSEEEEEECTTSSCEEEEEETTSSCEEE
T ss_pred CCCCceEEEEEECCCCcce----EcccCCCccccceECC------CCCEEEEEecCCCCccEEEECCCCCCcEE
Confidence 889999999864 33332 1235667899999998 588777666 58999999875 3444444
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.50 E-value=3.5e-11 Score=130.62 Aligned_cols=215 Identities=10% Similarity=0.060 Sum_probs=134.4
Q ss_pred cccCCCEEEEEEeeCCCeEEEec----CCcEEEeccCCCceeec--ccccCCccee--eCCCCCEEEEEE-CCCcEEEEe
Q 003360 189 PFLDSSITAMKLITGNSFILSSA----DEDYSLLAKSVPPLLDF--ETKLKDGSQS--HSKVKNLFITGH-SDGAINFWD 259 (826)
Q Consensus 189 ~~h~~~Vt~~~fs~~~~~l~~~~----d~~i~~w~~~~~~~~~~--~~~h~g~V~~--~s~~~~~l~Tgs-~DGtVriWD 259 (826)
..+...+..++|+|+++ +++++ ++.|.+|+......... ...+...+.. ++|++++|++++ .+++|++||
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34456677899999999 55543 46899997643332222 1224444444 899999888887 789999999
Q ss_pred C-CCCceeeeeecccccccc-cccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 260 V-SCPLFLLILSLKQQSEKD-FSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 260 ~-s~~~~~~i~~l~~~~~~~-~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
+ .......+..+....... ...+...+.+++|+|++++++++..++.|.+|++.... ....+
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g----------------~~~~~ 178 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG----------------QLSEQ 178 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS----------------CEEEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC----------------cEEEe
Confidence 9 333433333222110000 00122468999999999977777778899999997211 11000
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEE-EecCCeEEEEecCC--CeeEEeeecccC-----CCCCeeEEEEeecccCCCCC
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAV-GSDQGYVYLLDTEG--PTVLYQKHIASD-----ISSGIVSLQFETCSLQGFEK 409 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~las-Gs~dG~V~vwD~~~--~~~l~~~~~~~~-----~~~~V~sl~f~~~~~~~~d~ 409 (826)
. .........+..++|+|+|+++++ +..++.|.+||+.. ++.......... ....+..++|+| |+
T Consensus 179 ~-~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp------dG 251 (347)
T 3hfq_A 179 S-VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH------DG 251 (347)
T ss_dssp E-EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT------TS
T ss_pred e-eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC------CC
Confidence 0 001111235788999999996665 56789999999874 543221111111 114578899999 68
Q ss_pred cEEEE-EECCCcEEEEECC
Q 003360 410 NFLVI-ATKDSSVLVLDSD 427 (826)
Q Consensus 410 ~~l~s-gs~Dg~V~iwd~~ 427 (826)
.+|++ ...++.|.+|++.
T Consensus 252 ~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 252 HFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp CEEEEEEETTTEEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEC
Confidence 87754 5568999999986
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.50 E-value=9.4e-13 Score=154.19 Aligned_cols=182 Identities=8% Similarity=-0.018 Sum_probs=126.2
Q ss_pred EEEEEEeeCCCeEEE--ecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECC----CcEEEEeCCCCcee
Q 003360 195 ITAMKLITGNSFILS--SADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD----GAINFWDVSCPLFL 266 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~--~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D----GtVriWD~s~~~~~ 266 (826)
+...+|+|+++.++. +.++.+.+|+........+ ..+.+ .+ |+|+|++|++++.| +.|++||+.+....
T Consensus 112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l-~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~ 188 (582)
T 3o4h_A 112 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL-ARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 188 (582)
T ss_dssp BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE-EEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe-ecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence 345688888875433 4455555997655444443 22223 33 99999999988887 78999998554421
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG--MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg--~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
. +..|...+..++|+||++.|+++..+| .|.+||+.++.. .....
T Consensus 189 ~-----------l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~----------------------~~~~~ 235 (582)
T 3o4h_A 189 V-----------FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV----------------------EDLEL 235 (582)
T ss_dssp E-----------ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE----------------------EECCC
T ss_pred E-----------eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE----------------------EEccC
Confidence 1 234557789999999999999988999 888888875432 10111
Q ss_pred ccCCeEEEE--------EccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 345 INGSIISLN--------MNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 345 ~~~~V~~l~--------~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
+...+..++ |+|||.++++++.||++++|++ ++++. .....|.++.|+ . +.++++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~------~~~~~v~~~~~s-d------g~~l~~~s 300 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE------APQGNHGRVVLW-R------GKLVTSHT 300 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC------CCSSEEEEEEEE-T------TEEEEEEE
T ss_pred CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec------cCCCceEEEEec-C------CEEEEEEc
Confidence 222344444 9999998999999999999999 66552 223567788887 3 78888888
Q ss_pred CCC---cEEEEECC
Q 003360 417 KDS---SVLVLDSD 427 (826)
Q Consensus 417 ~Dg---~V~iwd~~ 427 (826)
.+. .+++||..
T Consensus 301 ~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 301 SLSTPPRIVSLPSG 314 (582)
T ss_dssp ETTEEEEEEEETTC
T ss_pred CCCCCCeEEEEcCC
Confidence 875 47777765
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.47 E-value=1.3e-11 Score=132.46 Aligned_cols=153 Identities=11% Similarity=0.061 Sum_probs=108.6
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCC-CeEEEEEeCCCCEE-EEEeCCCcEEEEEeCCCCCcccc
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGI-PLTALYYDGTSRVL-VSGDQSGMVRIFKLKYEPHAIEN 321 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~-~V~~l~fsp~~~~L-asgs~dg~V~iwd~~~~~~~~~~ 321 (826)
+++++++.|++|++||...... +..+.. .+.. .+..++|+|+++.+ +++..++.|.+||+.++...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~--~~~~~~-------~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--- 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV--DKVITI-------ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL--- 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE--EEEEEC-------TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---
T ss_pred cEEEEcCCCCeEEEEECCCCcE--EEEEEc-------CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---
Confidence 5799999999999999954442 122220 1111 47789999999765 45566789999999754321
Q ss_pred ceEEEeecCCCCeEEEEEEEEee---ccCCeEEEEEccCCCEEEEEe------------cCCeEEEEecCCCeeEEeeec
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVMK---INGSIISLNMNRNSQHLAVGS------------DQGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~~---~~~~V~~l~~s~~g~~lasGs------------~dG~V~vwD~~~~~~l~~~~~ 386 (826)
.. +.... +...+.+++|+|+|++|++++ .++.|.+||+.+++.+.....
T Consensus 70 --~~--------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 70 --GR--------------IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp --EE--------------EECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred --ee--------------EEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence 00 11100 112567899999999999886 579999999999887754432
Q ss_pred ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 387 ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 387 ~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
...+.++.|+| |+.+|+++ ++.|++||..+++.+..+.
T Consensus 134 ----~~~~~~~~~s~------dg~~l~~~--~~~i~~~d~~~~~~~~~~~ 171 (337)
T 1pby_B 134 ----PRQITMLAWAR------DGSKLYGL--GRDLHVMDPEAGTLVEDKP 171 (337)
T ss_dssp ----CSSCCCEEECT------TSSCEEEE--SSSEEEEETTTTEEEEEEC
T ss_pred ----CCCcceeEECC------CCCEEEEe--CCeEEEEECCCCcEeeeee
Confidence 34577788998 68878877 6899999999998876653
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.42 E-value=1.7e-10 Score=126.55 Aligned_cols=206 Identities=10% Similarity=0.075 Sum_probs=133.6
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccC-CCceeeccccc--CCccee--eCCCCCE--EEEEE-------------CC
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKS-VPPLLDFETKL--KDGSQS--HSKVKNL--FITGH-------------SD 252 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~-~~~~~~~~~~h--~g~V~~--~s~~~~~--l~Tgs-------------~D 252 (826)
..++.++|+|+++.+++++.+.+.+|+.. ...+... ..+ .+.... ++|++++ ++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~-~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHE-ASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEE-EEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEe-eEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 45778999999999988873389999753 3232222 112 133333 9999994 55553 79
Q ss_pred CcEEEEeCC-CCcee-eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeC-CCCCccccceEEEee
Q 003360 253 GAINFWDVS-CPLFL-LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLK-YEPHAIENSFLSFTG 328 (826)
Q Consensus 253 GtVriWD~s-~~~~~-~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~-~~~~~~~~~~~~i~~ 328 (826)
|++++|++. ...+. .+..+. ..+...+.+++|+|++++|++++. ++.|.+|++. ++...
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~---------- 181 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYE-------YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE---------- 181 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEE-------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE----------
T ss_pred ceEEEEccCCCCcCcceEeeEE-------eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE----------
Confidence 999999994 23321 111111 013467899999999998887764 6799999997 33210
Q ss_pred cCCCCeEEEEEEEEee---ccCCeEEEEEccCCCEEEEEec-CCeEEEEecC--CCeeEE---eeecc-c---CCCC---
Q 003360 329 SKKGNSHIIHSVKVMK---INGSIISLNMNRNSQHLAVGSD-QGYVYLLDTE--GPTVLY---QKHIA-S---DISS--- 392 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~---~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~--~~~~l~---~~~~~-~---~~~~--- 392 (826)
. +.... +...+..++|+|+|+++++++. ++.|.+|++. ++++.. ..... . ++..
T Consensus 182 -------~---~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 251 (365)
T 1jof_A 182 -------L---VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG 251 (365)
T ss_dssp -------E---EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred -------E---eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccc
Confidence 0 11111 2345899999999999888775 7899999875 455432 12211 1 1122
Q ss_pred ---CeeEEE-EeecccCCCCCcEEEEEECCC------cEEEEECC-CCceE
Q 003360 393 ---GIVSLQ-FETCSLQGFEKNFLVIATKDS------SVLVLDSD-NGNML 432 (826)
Q Consensus 393 ---~V~sl~-f~~~~~~~~d~~~l~sgs~Dg------~V~iwd~~-tg~~i 432 (826)
.+..++ |+| |+++|+++..+. +|.+|++. +|+..
T Consensus 252 ~~~~~~~i~~~sp------dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 252 KGLYRADVCALTF------SGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp SBSEEEEEEEECT------TSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred cccccccEEEECC------CCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 478899 998 688888776433 89999986 56644
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.40 E-value=2.4e-11 Score=131.21 Aligned_cols=161 Identities=10% Similarity=0.092 Sum_probs=104.0
Q ss_pred EEEeeCCCeEEEec-CCcEEEeccCCCcee-ecccccCCccee--eCCCCCEE-EEEECCCcEEEEeCCCCceeeeeecc
Q 003360 198 MKLITGNSFILSSA-DEDYSLLAKSVPPLL-DFETKLKDGSQS--HSKVKNLF-ITGHSDGAINFWDVSCPLFLLILSLK 272 (826)
Q Consensus 198 ~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~-~~~~~h~g~V~~--~s~~~~~l-~Tgs~DGtVriWD~s~~~~~~i~~l~ 272 (826)
+++++++..+++++ ++.|.+|+....... .+..+....+.. ++|+++++ +++..++.|.+||+...... ..+.
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~--~~~~ 82 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT--FHAN 82 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--EEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE--EEEE
Confidence 45667777778777 999999986554333 222222113444 99999854 56667899999999544421 1122
Q ss_pred cccccccccCCCCeEEEEEeCCCCEEEEEeCC------------CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 273 QQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS------------GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 273 ~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d------------g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
..... ..+...+..++|+|++++|++++.+ +.|.+||+.++.... . +
T Consensus 83 ~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--------------~-----~ 141 (349)
T 1jmx_B 83 LSSVP--GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK--------------P-----V 141 (349)
T ss_dssp SCCST--TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC--------------C-----S
T ss_pred ccccc--ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc--------------e-----e
Confidence 00000 0002347889999999999999865 899999997532210 0 2
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEee
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
....+...+.+++|+|+|+ +++++. .|.+||+.+++++...
T Consensus 142 ~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 142 RTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVAL 182 (349)
T ss_dssp EEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEE
T ss_pred eeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccc
Confidence 2223344688999999999 665544 4999999998877544
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.40 E-value=1.7e-11 Score=143.38 Aligned_cols=191 Identities=7% Similarity=0.036 Sum_probs=135.2
Q ss_pred CCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccC-Cccee--eCCCCCEEEEEEC---CCcEEEEeC---
Q 003360 192 DSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLK-DGSQS--HSKVKNLFITGHS---DGAINFWDV--- 260 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~-g~V~~--~s~~~~~l~Tgs~---DGtVriWD~--- 260 (826)
..+|..++|+|||+.++.++ |+++++|.........+ ..|. ..+.+ |+|+ ++++++.. +...++|.+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~l-t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKL-NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEEC-CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEee-ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 34699999999999999866 89999997655444444 3344 56766 9999 88888876 556677665
Q ss_pred -CCCceeeeeecccccccccccCCCCeEEEEEeCCCC--EEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEE
Q 003360 261 -SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR--VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHII 337 (826)
Q Consensus 261 -s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~--~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~ 337 (826)
.+... .+. ....+...+|+|+++ .+++++.+ .+.+||+.++..
T Consensus 99 ~~g~~~----~l~---------~~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~-------------------- 144 (582)
T 3o4h_A 99 RPGEEQ----RLE---------AVKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGL-------------------- 144 (582)
T ss_dssp STTCCE----ECT---------TSCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEE--------------------
T ss_pred CCCccc----ccc---------CCCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcE--------------------
Confidence 22221 111 112344667888774 44445444 555999974322
Q ss_pred EEEEEeeccCCeEEEEEccCCCEEEEEecC----CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEE
Q 003360 338 HSVKVMKINGSIISLNMNRNSQHLAVGSDQ----GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLV 413 (826)
Q Consensus 338 ~~~~~~~~~~~V~~l~~s~~g~~lasGs~d----G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~ 413 (826)
.....+.. .+++|||||++||+++.+ +.|++||+.++++.. . ..+...+.+++|+| |+..|+
T Consensus 145 --~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~-l---~~~~~~~~~~~~Sp------DG~~l~ 210 (582)
T 3o4h_A 145 --RELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV-F---DSGEGSFSSASISP------GMKVTA 210 (582)
T ss_dssp --EEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE-E---CCSSCEEEEEEECT------TSCEEE
T ss_pred --EEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE-e---ecCCCccccceECC------CCCEEE
Confidence 11112222 789999999999988877 789999998887651 1 35667789999999 799999
Q ss_pred EEECCC--cEEEEECCCCceE
Q 003360 414 IATKDS--SVLVLDSDNGNML 432 (826)
Q Consensus 414 sgs~Dg--~V~iwd~~tg~~i 432 (826)
++..++ .|++||..+|+..
T Consensus 211 ~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 211 GLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EEECSSCEEEEEECTTTCCEE
T ss_pred EccCCCeeEEEEEcCCCCcEE
Confidence 888888 8999999988876
No 160
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.40 E-value=9e-14 Score=108.27 Aligned_cols=60 Identities=27% Similarity=0.340 Sum_probs=53.3
Q ss_pred cchHHHHHhhCCCCCCcchHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHh
Q 003360 757 GAVDQIKKKYGFSHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAE 820 (826)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 820 (826)
+.++.++++.+ ++.++..++++||.||||||+.|++||++|+++|++|+++|++|++|||
T Consensus 4 ~~i~~v~~qv~----ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Kyk 63 (63)
T 1urq_A 4 GGIEGVKGAAS----GVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYK 63 (63)
T ss_dssp --CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35777888766 6678999999999999999999999999999999999999999999996
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.32 E-value=2.3e-09 Score=129.24 Aligned_cols=175 Identities=6% Similarity=-0.007 Sum_probs=105.7
Q ss_pred ecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeec-ccccCCcc-----------------ee--eCCCCCEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDF-ETKLKDGS-----------------QS--HSKVKNLFI 247 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~-~~~h~g~V-----------------~~--~s~~~~~l~ 247 (826)
+..|...+...+|||||+.++.+.++.|.+|+........+ ..++.+.+ .+ |+|||+.|+
T Consensus 107 l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la 186 (740)
T 4a5s_A 107 EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLA 186 (740)
T ss_dssp SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEE
T ss_pred cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEE
Confidence 45566789999999999999999899999997544333222 12222211 12 999999999
Q ss_pred EEECCCc------------------------------------EEEEeCCC---CceeeeeecccccccccccCCCCeEE
Q 003360 248 TGHSDGA------------------------------------INFWDVSC---PLFLLILSLKQQSEKDFSLSGIPLTA 288 (826)
Q Consensus 248 Tgs~DGt------------------------------------VriWD~s~---~~~~~i~~l~~~~~~~~~~h~~~V~~ 288 (826)
.++.|.+ |++||+.+ ........+.. ...+..|...|..
T Consensus 187 ~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~ 264 (740)
T 4a5s_A 187 YAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA--PASMLIGDHYLCD 264 (740)
T ss_dssp EEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC--CHHHHTSCEEEEE
T ss_pred EEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC--CccCCCCCeEEEE
Confidence 8875543 44555533 20000001110 0001125667999
Q ss_pred EEEeCCCCEEEEEeC----CCcEEEEEeCCCC----CccccceEEEeecCCCCeEEEEEEEEeeccCCe-----EEEEEc
Q 003360 289 LYYDGTSRVLVSGDQ----SGMVRIFKLKYEP----HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSI-----ISLNMN 355 (826)
Q Consensus 289 l~fsp~~~~Lasgs~----dg~V~iwd~~~~~----~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V-----~~l~~s 355 (826)
++|+||++.++.... +..|.+||+.++. +.. +. . +....+.+.| ....|+
T Consensus 265 ~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~---~~---------~-----l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 265 VTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV---AR---------Q-----HIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp EEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG---GG---------C-----EEEECSSSCSSSSSCCCCEEC
T ss_pred EEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE---EE---------E-----eeeccCCceEccCcCCCceEc
Confidence 999999997665533 3479999998665 110 00 0 1111223333 367899
Q ss_pred cCCCEEE-EEec-C--CeEEEEecCCCeeE
Q 003360 356 RNSQHLA-VGSD-Q--GYVYLLDTEGPTVL 381 (826)
Q Consensus 356 ~~g~~la-sGs~-d--G~V~vwD~~~~~~l 381 (826)
|||+.++ ..++ + ..|++||+.++.+.
T Consensus 328 pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 328 LDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred CCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 9999887 6654 3 46888998877655
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.30 E-value=2.1e-09 Score=117.79 Aligned_cols=212 Identities=10% Similarity=0.048 Sum_probs=130.8
Q ss_pred EEEEEEeeCCCe--EEEe--------------cCCcEEEeccCC-Ccee-ecc-c--ccCCccee--eCCCCCEEEEEE-
Q 003360 195 ITAMKLITGNSF--ILSS--------------ADEDYSLLAKSV-PPLL-DFE-T--KLKDGSQS--HSKVKNLFITGH- 250 (826)
Q Consensus 195 Vt~~~fs~~~~~--l~~~--------------~d~~i~~w~~~~-~~~~-~~~-~--~h~g~V~~--~s~~~~~l~Tgs- 250 (826)
+.+++|+|+++. ++++ .++.+.+|+... ..+. ... . .+...+.+ |+|+|++|+++.
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence 445778999984 4443 467889996532 2221 111 1 23344555 999999887765
Q ss_pred CCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEee
Q 003360 251 SDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 251 ~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
.++.|++||+. ...+..+..+. +..|+..+..++|+|++++|++++. ++.|.+|++..... .+..
T Consensus 165 ~~~~v~~~~~~~~g~~~~~~~~~------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g----~~~~--- 231 (365)
T 1jof_A 165 TANKLWTHRKLASGEVELVGSVD------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH----MPVY--- 231 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEE------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC----CEEE---
T ss_pred CCCEEEEEEECCCCCEEEeeeEe------cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCC----cEEE---
Confidence 46899999995 44432222221 1123567899999999999988775 68999999863211 0000
Q ss_pred cCCCCeEEEEEEEEee-----ccC------CeEEEE-EccCCCEEEEEecCC------eEEEEecC-CCeeEEeeecccC
Q 003360 329 SKKGNSHIIHSVKVMK-----ING------SIISLN-MNRNSQHLAVGSDQG------YVYLLDTE-GPTVLYQKHIASD 389 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~-----~~~------~V~~l~-~s~~g~~lasGs~dG------~V~vwD~~-~~~~l~~~~~~~~ 389 (826)
....+.... +.. .+.+++ |+|+|++|++++.+. +|.+||+. ++++.........
T Consensus 232 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~ 304 (365)
T 1jof_A 232 -------THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp -------EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred -------ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec
Confidence 000011111 111 478999 999999888776432 89999996 5654421111112
Q ss_pred CCCCeeEEEEeecccCCCCCcEEEEEECC-CcEEEEECCCC
Q 003360 390 ISSGIVSLQFETCSLQGFEKNFLVIATKD-SSVLVLDSDNG 429 (826)
Q Consensus 390 ~~~~V~sl~f~~~~~~~~d~~~l~sgs~D-g~V~iwd~~tg 429 (826)
+...+..++|+|... |+.+|++++.+ +.|.+|+....
T Consensus 305 ~~~~~~~~a~sp~~~---dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 305 PTSGGHSNAVSPCPW---SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSCCTTCCCEEECTT---CTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCcccceecCCCc---CCCEEEEEEcCCCeEEEEEEchh
Confidence 334456788888211 38889988865 89999998755
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.29 E-value=3.8e-10 Score=135.41 Aligned_cols=207 Identities=7% Similarity=-0.029 Sum_probs=120.4
Q ss_pred EEEEEeeCCCeEEEec-CC----------------------------------cEEEeccCCCcee---ec-----cccc
Q 003360 196 TAMKLITGNSFILSSA-DE----------------------------------DYSLLAKSVPPLL---DF-----ETKL 232 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~-d~----------------------------------~i~~w~~~~~~~~---~~-----~~~h 232 (826)
..++|+|||+.|+.++ |. .+.+|+....... .+ ..+|
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 5789999999999876 42 5667765443221 11 1246
Q ss_pred CCccee--eCCCCCEEEEEECCC----cEEEEe----CCCCceeeeeecccccccccccCCCCeE-----EEEEeCCCCE
Q 003360 233 KDGSQS--HSKVKNLFITGHSDG----AINFWD----VSCPLFLLILSLKQQSEKDFSLSGIPLT-----ALYYDGTSRV 297 (826)
Q Consensus 233 ~g~V~~--~s~~~~~l~Tgs~DG----tVriWD----~s~~~~~~i~~l~~~~~~~~~~h~~~V~-----~l~fsp~~~~ 297 (826)
.+.+.+ |+|+++++++....+ .|.+|| +.+..... .+. .....|...|. .+.|+|+++.
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~--~~~----~~~~~~~~~~~~~~~~~~~~spdg~~ 325 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK--TQE----HIEESRTGWAGGFFVSTPVFSYDAIS 325 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG--GGE----EEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE--EEe----cccccCCceEccccCCccEECCCCCe
Confidence 666666 999988888755433 488899 63333111 010 00013444555 7899999985
Q ss_pred EE--EEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC-----CeE
Q 003360 298 LV--SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ-----GYV 370 (826)
Q Consensus 298 La--sgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d-----G~V 370 (826)
|+ ++..+|...||-+..... .. .........|..+.++ +++.|+..+.+ +.+
T Consensus 326 l~~~~~~~~g~~~l~~~~~~~~---------------~~-----~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 326 YYKIFSDKDGYKHIHYIKDTVE---------------NA-----IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp EEEEEECTTSCEEEEEESSCST---------------TC-----EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EEEEEEccCCceEEEEEECCCC---------------ce-----EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 54 456777655555442111 11 1122223457777777 77777776654 788
Q ss_pred EEEecCC--Cee-EEeeec-ccCCCCCeeEEEEeecccCCCCCcEEE-EEECC--CcEEEEECCCCceEEee
Q 003360 371 YLLDTEG--PTV-LYQKHI-ASDISSGIVSLQFETCSLQGFEKNFLV-IATKD--SSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 371 ~vwD~~~--~~~-l~~~~~-~~~~~~~V~sl~f~~~~~~~~d~~~l~-sgs~D--g~V~iwd~~tg~~i~~~ 435 (826)
++|.+.. +.. ...... ..++...+..+.|++ |+.+++ +++.+ ..+.+||..+|+++..+
T Consensus 385 ~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~------dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~ 450 (719)
T 1z68_A 385 NIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSD------YAKYYALVCYGPGIPISTLHDGRTDQEIKIL 450 (719)
T ss_dssp EEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECG------GGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred EEEEEeCCCCCCCceeccCccCCCCCceEEEEECC------CCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence 8888753 321 111111 112456778889998 455555 44444 46899999888866543
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.27 E-value=2.2e-09 Score=112.90 Aligned_cols=241 Identities=12% Similarity=0.105 Sum_probs=156.9
Q ss_pred cCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeeccc-----ccCCccee--e-CCCCCEEEEEEC-CCcEEEEeC
Q 003360 191 LDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFET-----KLKDGSQS--H-SKVKNLFITGHS-DGAINFWDV 260 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~-----~h~g~V~~--~-s~~~~~l~Tgs~-DGtVriWD~ 260 (826)
+-..+..+++.+++..+++.. ++.|.+|+........+.. ++...+.+ + .++++++++... ++.|++||.
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~ 107 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 107 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC
Confidence 335678899999998777766 8899999765433333311 12233334 5 577888887754 899999997
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
.+... ..+. ..+...+..|+++|+++++++...++.|.+|+.... . +.. +
T Consensus 108 ~g~~~---~~~~-------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~-----~~~--------------~ 157 (286)
T 1q7f_A 108 YGQFV---RKFG-------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-V-----LHK--------------F 157 (286)
T ss_dssp TSCEE---EEEC-------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E-----EEE--------------E
T ss_pred CCcEE---EEec-------CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-E-----EEE--------------e
Confidence 65542 1121 112357899999999998888888899999986421 0 000 1
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC-
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS- 419 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg- 419 (826)
........+.+|+++++|.++++.+.++.|++||.. +..+..... .++...+..+++++ ++.++++...++
T Consensus 158 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~g~~~~p~~i~~d~------~G~l~v~~~~~~~ 229 (286)
T 1q7f_A 158 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINS------NGEILIADNHNNF 229 (286)
T ss_dssp ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESC-TTTSCSEEEEEECT------TCCEEEEECSSSC
T ss_pred CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEcc-CCccCCCcEEEECC------CCCEEEEeCCCCE
Confidence 000122358999999999877777889999999985 444433321 12235688899988 577777776675
Q ss_pred cEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEecc
Q 003360 420 SVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLS 499 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~ 499 (826)
.|.+||.. |+.+..+..+... ..+..+.+ .+++.+++++.++.|++|++.
T Consensus 230 ~i~~~~~~-g~~~~~~~~~~~~-~~~~~i~~----------------------------~~~g~l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 230 NLTIFTQD-GQLISALESKVKH-AQCFDVAL----------------------------MDDGSVVLASKDYRLYIYRYV 279 (286)
T ss_dssp EEEEECTT-SCEEEEEEESSCC-SCEEEEEE----------------------------ETTTEEEEEETTTEEEEEECS
T ss_pred EEEEECCC-CCEEEEEcccCCC-CcceeEEE----------------------------CCCCcEEEECCCCeEEEEEcc
Confidence 99999964 7777776443321 11222222 223446666667789999875
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.24 E-value=1.9e-11 Score=146.82 Aligned_cols=206 Identities=14% Similarity=0.136 Sum_probs=136.2
Q ss_pred EEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCC---ccee--eCCCCCEEEEEEC---------CCcEEEEeCCC
Q 003360 197 AMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKD---GSQS--HSKVKNLFITGHS---------DGAINFWDVSC 262 (826)
Q Consensus 197 ~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g---~V~~--~s~~~~~l~Tgs~---------DGtVriWD~s~ 262 (826)
.++|+|++.+++++.|+.+.+|+........+..+|.. ++.+ |+|||++|++++. |++|++||+.+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 46799999766666699999998766554444233332 3555 9999999999887 79999999966
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
... +.. ..+ ...+..++|+|||+.||.+. ++.|++|++.++... .+. .++... ..+
T Consensus 100 g~~-----~~~---~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~------~l~--~~~~~~----~v~ 155 (719)
T 1z68_A 100 GEF-----VRG---NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF------QIT--FNGREN----KIF 155 (719)
T ss_dssp TEE-----CCS---SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE------ECC--CCCBTT----TEE
T ss_pred Ccc-----ccc---eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE------EEe--cCCCcC----CeE
Confidence 552 100 001 13688899999999999886 789999999755321 000 011000 000
Q ss_pred eecc---------CCeEEEEEccCCCEEEEEecCC----------------------------------eEEEEecCCCe
Q 003360 343 MKIN---------GSIISLNMNRNSQHLAVGSDQG----------------------------------YVYLLDTEGPT 379 (826)
Q Consensus 343 ~~~~---------~~V~~l~~s~~g~~lasGs~dG----------------------------------~V~vwD~~~~~ 379 (826)
..+. +...+++|||||++||+++.|. .|++||+.+++
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~ 235 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA 235 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence 0010 2235899999999999988652 78899998876
Q ss_pred eE--Eeee---cccCCCCCeeEEEEeecccCCCCCcEEEEEECCC----cEEEEE----CCCCceE
Q 003360 380 VL--YQKH---IASDISSGIVSLQFETCSLQGFEKNFLVIATKDS----SVLVLD----SDNGNML 432 (826)
Q Consensus 380 ~l--~~~~---~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg----~V~iwd----~~tg~~i 432 (826)
.. .... ....+...+.++.|+| |+.++++....+ .|.+|| ..+|++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~Sp------D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 236 YVGPQEVPVPAMIASSDYYFSWLTWVT------DERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp HHCCEECCCCHHHHTSCEEEEEEEESS------SSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred ccceeEccCCccCCCCcceEEEeEEeC------CCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 42 1111 1124667789999999 677666654332 488999 7777654
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.21 E-value=3.6e-09 Score=114.21 Aligned_cols=230 Identities=11% Similarity=0.075 Sum_probs=142.7
Q ss_pred CCCEEEEEEeeCCCeEEEec-C------------------------CcEEEeccCCCceeec-ccccCCccee--eCCCC
Q 003360 192 DSSITAMKLITGNSFILSSA-D------------------------EDYSLLAKSVPPLLDF-ETKLKDGSQS--HSKVK 243 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d------------------------~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~~~ 243 (826)
-..|+.++++++++.+++.. + +.|.+|+.....+... ...+...... +++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 36799999999999988876 5 2578887654333322 1122223333 88999
Q ss_pred CEEEEEECCCcEEEEeCCCCceeeeeeccccccc-ccccCCCCeEEEEEeC-CCCEEEEEe-CCCcEEEEEeCCCCCccc
Q 003360 244 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEK-DFSLSGIPLTALYYDG-TSRVLVSGD-QSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 244 ~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~-~~~~h~~~V~~l~fsp-~~~~Lasgs-~dg~V~iwd~~~~~~~~~ 320 (826)
+++++...++.|++||..+... .+..+...... .-..+-.....|+|+| ++.++++.+ .++.|++|+.. +..
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~--- 177 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKF--- 177 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCE---
T ss_pred CEEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCE---
Confidence 9999999999999999965521 11222110000 0012235789999999 788888776 68999999943 111
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEE
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
+..+.....+.. . ....-.....|+++|+ +.++++...++.|++||..+++.+..... ..+...+.++.|
T Consensus 178 --~~~~~~~g~~~~-----~-~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~ 248 (329)
T 3fvz_A 178 --VTQWGEESSGSS-----P-RPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISY 248 (329)
T ss_dssp --EEEECEECCSSS-----C-CTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEE
T ss_pred --EEEeccCCCCCC-----C-CCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeee
Confidence 010000000000 0 0001123789999998 77777777899999999987887755432 245567888888
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.|......++...++...+.+|++|+..+|+.+.++
T Consensus 249 ~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 249 IPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp ETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred cCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 872111112333333344558999999999988875
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.18 E-value=9.1e-09 Score=108.16 Aligned_cols=197 Identities=7% Similarity=0.100 Sum_probs=133.6
Q ss_pred cCCCEEEEEEe-eCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 191 LDSSITAMKLI-TGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 191 h~~~Vt~~~fs-~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
|...+..+++. +++..+++.. ++.|.+|+........+...+...+.+ ++++++++++...++.|.+||..+...
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~ 154 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL 154 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE
Confidence 34567888885 6666666653 778999975543333332233334445 889999999988899999999865542
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
..+.. ..+...+..|+++|+++++++...++.|++|+.... . +.....
T Consensus 155 ---~~~~~------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~----------------------~~~~~~ 202 (286)
T 1q7f_A 155 ---HKFGC------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-Y----------------------LRQIGG 202 (286)
T ss_dssp ---EEEEC------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-E----------------------EEEESC
T ss_pred ---EEeCC------CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-E----------------------EEEEcc
Confidence 11210 123356899999999998888888999999997521 0 111111
Q ss_pred ---cCCeEEEEEccCCCEEEEEecCC-eEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 346 ---NGSIISLNMNRNSQHLAVGSDQG-YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 346 ---~~~V~~l~~s~~g~~lasGs~dG-~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
...+..|+++++|.++++...++ .|.+||.. ++.+..... ......+.++++.+ ++.++++ +.|++|
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~~~~i~~~~------~g~l~vs-~~~~~v 273 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALES-KVKHAQCFDVALMD------DGSVVLA-SKDYRL 273 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEE-SSCCSCEEEEEEET------TTEEEEE-ETTTEE
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcc-cCCCCcceeEEECC------CCcEEEE-CCCCeE
Confidence 14578999999998888887776 99999964 555533332 12223477899988 4765555 789999
Q ss_pred EEEECCC
Q 003360 422 LVLDSDN 428 (826)
Q Consensus 422 ~iwd~~t 428 (826)
++|+...
T Consensus 274 ~v~~~~~ 280 (286)
T 1q7f_A 274 YIYRYVQ 280 (286)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 9999764
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.17 E-value=3.7e-09 Score=125.42 Aligned_cols=212 Identities=10% Similarity=0.009 Sum_probs=128.9
Q ss_pred cCCCEEEEEEeeCCCeEEEec-C----------CcEEEeccCC------Cceeeccc-ccCCccee--eCCCCCEEEEEE
Q 003360 191 LDSSITAMKLITGNSFILSSA-D----------EDYSLLAKSV------PPLLDFET-KLKDGSQS--HSKVKNLFITGH 250 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~-d----------~~i~~w~~~~------~~~~~~~~-~h~g~V~~--~s~~~~~l~Tgs 250 (826)
|...+..++|+|||+.|+.++ + ..|.+|+... .....+ . .+.+.+.. |+|||++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVREL-SDDAHRFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEES-SCSCSSEECCCEECTTSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEE-EecCCCcccCceECCCCCEEEEEE
Confidence 556788999999999999877 5 4678887654 344434 3 34445544 999999999887
Q ss_pred CCC--------cEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCcccc
Q 003360 251 SDG--------AINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN 321 (826)
Q Consensus 251 ~DG--------tVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~ 321 (826)
.|+ .|++||+. .........+. ..+...+..++|+|+++++++++.+|...||.+.....
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~---- 275 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLL-------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG---- 275 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC----
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeC-------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC----
Confidence 654 79999996 34111111121 22456889999999999888898899666666542110
Q ss_pred ceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEE--ecCCCeeEEeeecccCCCCCeeEE-E
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLL--DTEGPTVLYQKHIASDISSGIVSL-Q 398 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vw--D~~~~~~l~~~~~~~~~~~~V~sl-~ 398 (826)
....+...... .......-.+.+++|++++.++++++. |.++|| |+.++... .. ..+...+..+ .
T Consensus 276 ~~~~l~~~~~~-------~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~-~l---~~~~~~~~~~~s 343 (662)
T 3azo_A 276 AATQLCRREEE-------FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELV-DA---AGPWTEWAATLT 343 (662)
T ss_dssp CEEESSCCSSB-------SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEE-EC---CSSCCEEEEEEE
T ss_pred ceeeccccccc-------ccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEE-Ee---cCCCCeEEEEEe
Confidence 01100000000 000000111567899999999999999 999999 66555532 22 2345556655 4
Q ss_pred EeecccCCCCCcEEEEE-ECCC--cEEEEECCCCceEE
Q 003360 399 FETCSLQGFEKNFLVIA-TKDS--SVLVLDSDNGNMLS 433 (826)
Q Consensus 399 f~~~~~~~~d~~~l~sg-s~Dg--~V~iwd~~tg~~i~ 433 (826)
+.. +.+++++ +.+. .|.+||..+++...
T Consensus 344 ~~~-------~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 344 VSG-------TRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp EET-------TEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred cCC-------CEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 432 3344443 4443 56777887776543
No 169
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.15 E-value=9.4e-09 Score=112.87 Aligned_cols=194 Identities=10% Similarity=0.040 Sum_probs=127.1
Q ss_pred EEEeeCCCeEEEec--CCc--EEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeec
Q 003360 198 MKLITGNSFILSSA--DED--YSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL 271 (826)
Q Consensus 198 ~~fs~~~~~l~~~~--d~~--i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l 271 (826)
.+|+||++.++.++ ++. +.+|+............+...+.. |+|+++.|+.++.++.|++||+.+.....+...
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 67999999988866 554 555565554444443444444433 999999999999999999999955543232222
Q ss_pred ccccccccccCCCCeEEE--EEeCCCCEEEEE----------------------eCCCcEEEEEeCCCCCccccceEEEe
Q 003360 272 KQQSEKDFSLSGIPLTAL--YYDGTSRVLVSG----------------------DQSGMVRIFKLKYEPHAIENSFLSFT 327 (826)
Q Consensus 272 ~~~~~~~~~~h~~~V~~l--~fsp~~~~Lasg----------------------s~dg~V~iwd~~~~~~~~~~~~~~i~ 327 (826)
+...+... .++|++..++.. ..+..|.+||+.++..
T Consensus 121 ----------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~---------- 180 (388)
T 3pe7_A 121 ----------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES---------- 180 (388)
T ss_dssp ----------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE----------
T ss_pred ----------hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce----------
Confidence 22233333 348999888743 2346788888874322
Q ss_pred ecCCCCeEEEEEEEEeeccCCeEEEEEcc-CCCEEEEEecC------CeEEEEecCCCeeEEeeecccCCC-CCeeEEEE
Q 003360 328 GSKKGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQ------GYVYLLDTEGPTVLYQKHIASDIS-SGIVSLQF 399 (826)
Q Consensus 328 ~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~d------G~V~vwD~~~~~~l~~~~~~~~~~-~~V~sl~f 399 (826)
.....+...+..++|+| +|+.|+....+ ..|.++|+.++.... +..... ..+....|
T Consensus 181 ------------~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~---l~~~~~~~~~~~~~~ 245 (388)
T 3pe7_A 181 ------------TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK---VKTHAEGESCTHEFW 245 (388)
T ss_dssp ------------EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE---SCCCCTTEEEEEEEE
T ss_pred ------------EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE---eeeCCCCcccccceE
Confidence 22223456789999999 99999888764 378888887665431 111221 35777889
Q ss_pred eecccCCCCCcEEEEEEC-CC----cEEEEECCCCceE
Q 003360 400 ETCSLQGFEKNFLVIATK-DS----SVLVLDSDNGNML 432 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~-Dg----~V~iwd~~tg~~i 432 (826)
+| |+..|+..+. ++ .|++||+.+|+..
T Consensus 246 sp------dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (388)
T 3pe7_A 246 VP------DGSALVYVSYLKGSPDRFIYSADPETLENR 277 (388)
T ss_dssp CT------TSSCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred CC------CCCEEEEEecCCCCCcceEEEEecCCCceE
Confidence 98 6876655443 22 3999999988743
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.12 E-value=2.9e-09 Score=126.37 Aligned_cols=217 Identities=6% Similarity=0.000 Sum_probs=136.1
Q ss_pred ecccCCCEEEEEEeeCCCeEEEe--c-CCcEEEecc-CCCceeecccccCCcce---------e--e--CCCCCE-EEEE
Q 003360 188 MPFLDSSITAMKLITGNSFILSS--A-DEDYSLLAK-SVPPLLDFETKLKDGSQ---------S--H--SKVKNL-FITG 249 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~--~-d~~i~~w~~-~~~~~~~~~~~h~g~V~---------~--~--s~~~~~-l~Tg 249 (826)
+..|...|..++++++.-.++.. . ++...+|.. .......+ ..|...+. . | +||++. |+.+
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 45688899999999776555555 4 677888853 22233333 33333333 2 3 499998 6655
Q ss_pred EC-CCcEEEEeCC--C-CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC----------CcEEEEEeCCC
Q 003360 250 HS-DGAINFWDVS--C-PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS----------GMVRIFKLKYE 315 (826)
Q Consensus 250 s~-DGtVriWD~s--~-~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d----------g~V~iwd~~~~ 315 (826)
+. +..|.+|++. + ..... +... ....|...+..++|+||++.|++++.+ ..|.+||+.+.
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~---l~~~---~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRP---LTPV---SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEE---CSCC---CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred ECCCCeEEEEcCCCCCCCCCEe---ccCC---ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 43 4566666665 3 33211 2210 000145678999999999999998877 58899998751
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEe-eccCCeEEEEEccCCCEEEEEecCC--------eEEEEecC-CCeeEEeee
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVM-KINGSIISLNMNRNSQHLAVGSDQG--------YVYLLDTE-GPTVLYQKH 385 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~lasGs~dG--------~V~vwD~~-~~~~l~~~~ 385 (826)
.... .+.. .... .+...+..++|||||++|++++.++ .|++||+. ++.......
T Consensus 172 ~~~~-----------~~~~-----~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 172 AAAD-----------RSAV-----RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp TTTC-----------GGGS-----EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred cccc-----------CCce-----eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 1000 0101 1111 2234577889999999999888653 79999998 562111112
Q ss_pred cccCCCCCeeEEEEeecccCCCCCcEEEEEECCC--cEEEEECCCCceEE
Q 003360 386 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDS--SVLVLDSDNGNMLS 433 (826)
Q Consensus 386 ~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg--~V~iwd~~tg~~i~ 433 (826)
+..++...+..+.|+| |+.+++++..++ .|.+||..+|+...
T Consensus 236 l~~~~~~~~~~~~~sp------dg~l~~~~~~~~~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 236 LLGGPEEAIAQAEWAP------DGSLIVATDRTGWWNLHRVDPATGAATQ 279 (662)
T ss_dssp EEEETTBCEEEEEECT------TSCEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred eCCCCCceEcceEECC------CCeEEEEECCCCCeEEEEEECCCCceee
Confidence 2234567889999998 688778887888 67777877776543
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.12 E-value=8e-10 Score=133.22 Aligned_cols=204 Identities=10% Similarity=0.059 Sum_probs=133.3
Q ss_pred EEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCc-----c--eeeCCCCCEEEEEECC---------CcEEEE
Q 003360 195 ITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDG-----S--QSHSKVKNLFITGHSD---------GAINFW 258 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~-----V--~~~s~~~~~l~Tgs~D---------GtVriW 258 (826)
...++|+|++.+++++ |+.|.+|+........+...|... . .+|+|||++|+.++.+ +.+.+|
T Consensus 19 ~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 4568899999988887 999999976554444332444332 2 1279999999999887 556699
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 338 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~ 338 (826)
|+.+..... +..|...+...+|||||+.||.+. ++.|.+|++.++.. ..++. ++...
T Consensus 98 d~~~~~~~~-----------l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~------~~lt~--~g~~~--- 154 (740)
T 4a5s_A 98 DLNKRQLIT-----------EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS------YRITW--TGKED--- 154 (740)
T ss_dssp ETTTTEECC-----------SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC------EECCS--CCBTT---
T ss_pred ECCCCcEEE-----------cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce------EEEcC--CCCcc---
Confidence 996665211 234556899999999999999884 67899999875532 11111 11000
Q ss_pred EEEEeecc---------CCeEEEEEccCCCEEEEEecCC------------------------------------eEEEE
Q 003360 339 SVKVMKIN---------GSIISLNMNRNSQHLAVGSDQG------------------------------------YVYLL 373 (826)
Q Consensus 339 ~~~~~~~~---------~~V~~l~~s~~g~~lasGs~dG------------------------------------~V~vw 373 (826)
..+..+. +...++.|||||+.||.++.|. +|++|
T Consensus 155 -~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 155 -IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp -TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred -ceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 0000000 2234588999999888875332 47888
Q ss_pred ecCC---C---eeEEeeecc---cCCCCCeeEEEEeecccCCCCCcEEEEEEC----CCcEEEEECCCCc
Q 003360 374 DTEG---P---TVLYQKHIA---SDISSGIVSLQFETCSLQGFEKNFLVIATK----DSSVLVLDSDNGN 430 (826)
Q Consensus 374 D~~~---~---~~l~~~~~~---~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~----Dg~V~iwd~~tg~ 430 (826)
|+.+ + +.. ..... .++...+..+.|+| |+..++.... +..|++||..+|+
T Consensus 234 d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wsp------dg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 234 NTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWAT------QERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp ETTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEE------TTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred ECCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeC------CCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 8887 6 332 12111 02666789999999 6876665543 2379999999887
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.12 E-value=1.2e-08 Score=110.06 Aligned_cols=208 Identities=8% Similarity=0.033 Sum_probs=137.0
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC--ceeecc--------cccCCccee--eCC-CCCEEEEEE-CCCcEE
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSVP--PLLDFE--------TKLKDGSQS--HSK-VKNLFITGH-SDGAIN 256 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~--~~~~~~--------~~h~g~V~~--~s~-~~~~l~Tgs-~DGtVr 256 (826)
-.....+++.+++..+++.. ++.|..|+.... .+..+. ..+...... ++| +++++++.+ .++.|+
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 34678899999999777776 788999976543 333331 111222333 888 899999997 799999
Q ss_pred EEeCCCCceeeeeeccccccc--ccccCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCC
Q 003360 257 FWDVSCPLFLLILSLKQQSEK--DFSLSGIPLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGN 333 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~--~~~~h~~~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~ 333 (826)
+||..+... ..+...... ....+-.....|+++|+ +.++++...++.|++|+..++... ..
T Consensus 170 ~~~~~g~~~---~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~-----~~-------- 233 (329)
T 3fvz_A 170 QFSPSGKFV---TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV-----RE-------- 233 (329)
T ss_dssp EECTTSCEE---EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-----EE--------
T ss_pred EEcCCCCEE---EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE-----EE--------
Confidence 999766553 222110000 00011145899999998 677777778899999998743221 00
Q ss_pred eEEEEEEEEeeccCCeEEEEEcc------CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCC
Q 003360 334 SHIIHSVKVMKINGSIISLNMNR------NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF 407 (826)
Q Consensus 334 ~~~~~~~~~~~~~~~V~~l~~s~------~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~ 407 (826)
+....+...+.+++|+| +|...++.+.+..|++||+.+++++..+.....+...+..+++++
T Consensus 234 ------~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~------ 301 (329)
T 3fvz_A 234 ------IKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE------ 301 (329)
T ss_dssp ------ECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT------
T ss_pred ------EeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC------
Confidence 11112234578888888 333233333456899999999998865533335566789999998
Q ss_pred CCcEEEEEECCCcEEEEECC
Q 003360 408 EKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 408 d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++.++++...+++|++|+..
T Consensus 302 dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 302 DGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TSEEEEEESSSCCEEEEEEE
T ss_pred CCCEEEEECCCCEEEEEeCC
Confidence 58777777889999999976
No 173
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.10 E-value=4.2e-08 Score=103.76 Aligned_cols=212 Identities=11% Similarity=0.006 Sum_probs=138.0
Q ss_pred ecccCCCEEEEEEeeCCC-eEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 188 MPFLDSSITAMKLITGNS-FILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~-~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
+..+......++|+++++ .++++. ++.|..|+.... ...+ ..+.+.+.+ ++++++++++.+.++.|.+||....
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 445566778999999998 666666 888999976654 4433 234455555 8999999988888899999999333
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC---------------cEEEEEeCCCCCccccceEEEee
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG---------------MVRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg---------------~V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
....+.... . ......+..++++|+++++++.+..| .-.||.+...
T Consensus 101 ~~~~~~~~~-~-----~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~------------- 161 (296)
T 3e5z_A 101 EWESIADSF-E-----GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD------------- 161 (296)
T ss_dssp CEEEEECEE-T-----TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-------------
T ss_pred cEEEEeecc-C-----CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-------------
Confidence 322211110 0 01124577899999999888743211 2356666522
Q ss_pred cCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC-CCee-EEeeecccCCCCCeeEEEEeecccCC
Q 003360 329 SKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE-GPTV-LYQKHIASDISSGIVSLQFETCSLQG 406 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~-~~~~-l~~~~~~~~~~~~V~sl~f~~~~~~~ 406 (826)
+.. ............++|+|+|+.+++.+.++.|.+||+. .+++ ...... ......+..+++.+
T Consensus 162 ---g~~-----~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~----- 227 (296)
T 3e5z_A 162 ---GTL-----SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDA----- 227 (296)
T ss_dssp ---SCE-----EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBT-----
T ss_pred ---CCE-----EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECC-----
Confidence 111 1112223457899999999988777788999999996 4554 111111 22444566788887
Q ss_pred CCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 407 FEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 407 ~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
++. |++++ ++.|.+||.. |+.+..+..+
T Consensus 228 -~G~-l~v~~-~~~v~~~~~~-g~~~~~~~~~ 255 (296)
T 3e5z_A 228 -GGL-IWASA-GDGVHVLTPD-GDELGRVLTP 255 (296)
T ss_dssp -TSC-EEEEE-TTEEEEECTT-SCEEEEEECS
T ss_pred -CCC-EEEEc-CCeEEEECCC-CCEEEEEECC
Confidence 466 55555 8899999987 8887776433
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.07 E-value=7.9e-09 Score=113.48 Aligned_cols=201 Identities=9% Similarity=-0.049 Sum_probs=122.0
Q ss_pred cCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee----eCCCCCEEEEEE---------------
Q 003360 191 LDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS----HSKVKNLFITGH--------------- 250 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~----~s~~~~~l~Tgs--------------- 250 (826)
+...+....|+|+++.|+.+. +..+.+|+............+.+.+.. +++++++++...
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchh
Confidence 333444567999999999988 778999976554433332223333322 589999887432
Q ss_pred -------CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCC------cEEEEEeCCCC
Q 003360 251 -------SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSG------MVRIFKLKYEP 316 (826)
Q Consensus 251 -------~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg------~V~iwd~~~~~ 316 (826)
.++.|.+||+.+..... + ..+...+..++|+| +++.|+....++ .|.+||.....
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~~~~---l--------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTGESTV---I--------LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTCCEEE---E--------EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred hhhhccCCcceEEEEECCCCceEE---e--------ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 44679999985444222 1 12345789999999 999888777643 56666665321
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeecc--CCeEEEEEccCCCEEEEEec-CC----eEEEEecCCCeeEEeeecccC
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKIN--GSIISLNMNRNSQHLAVGSD-QG----YVYLLDTEGPTVLYQKHIASD 389 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~--~~V~~l~~s~~g~~lasGs~-dG----~V~vwD~~~~~~l~~~~~~~~ 389 (826)
. .....+. ..+..++|+|+|+.|+..+. ++ .|++||+.+++........ .
T Consensus 228 ~----------------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~ 284 (388)
T 3pe7_A 228 M----------------------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP-A 284 (388)
T ss_dssp C----------------------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC-C
T ss_pred e----------------------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC-C
Confidence 1 1111112 24778899999998866543 22 3999999988754222211 1
Q ss_pred CC---CCeeEEEEeecccCCCCCcEEEEE---------ECCCcEEEEECCCCce
Q 003360 390 IS---SGIVSLQFETCSLQGFEKNFLVIA---------TKDSSVLVLDSDNGNM 431 (826)
Q Consensus 390 ~~---~~V~sl~f~~~~~~~~d~~~l~sg---------s~Dg~V~iwd~~tg~~ 431 (826)
+. .....+.|+| |+..|+.. ..+..|++||..+++.
T Consensus 285 ~~~~~~~~~~~~~sp------dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 285 CSHLMSNYDGSLMVG------DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp EEEEEECTTSSEEEE------EECCC------------CCCCEEEEEETTTTEE
T ss_pred ceeeeecCCCCeEcc------CCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 00 0011135777 57666643 4466899999997765
No 175
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.04 E-value=9.3e-08 Score=104.66 Aligned_cols=239 Identities=11% Similarity=0.071 Sum_probs=142.1
Q ss_pred CccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-----------CCcEEEeccCC
Q 003360 154 SGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-----------DEDYSLLAKSV 222 (826)
Q Consensus 154 ~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-----------d~~i~~w~~~~ 222 (826)
++.+++||..+. .....++.+..+ .++|+|+++.++++. ++.|.+|+...
T Consensus 30 d~~v~v~D~~t~-----------------~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 30 ESRVHVYDYTNG-----------------KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp GCEEEEEETTTC-----------------CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred cCeEEEEECCCC-----------------eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 568999986551 112234444444 789999999998864 45699997654
Q ss_pred Ccee-ecccc--c---CCccee--eCCCCCEEEEEEC--CCcEEEEeCCCCceeeeee-cccccccccccCCCCeEEEEE
Q 003360 223 PPLL-DFETK--L---KDGSQS--HSKVKNLFITGHS--DGAINFWDVSCPLFLLILS-LKQQSEKDFSLSGIPLTALYY 291 (826)
Q Consensus 223 ~~~~-~~~~~--h---~g~V~~--~s~~~~~l~Tgs~--DGtVriWD~s~~~~~~i~~-l~~~~~~~~~~h~~~V~~l~f 291 (826)
.... .+..+ + ...... ++|+|++|+++.. +++|.+||+..... +.. +. .. ....+.+
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~--~~~~i~--------~~--~~~~v~~ 158 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY--VEDVTA--------AA--GCWSVIP 158 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE--EEEEGG--------GT--TEEEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE--EEEEec--------CC--CcceeEE
Confidence 2222 22111 1 111222 9999999988874 68999999955442 233 22 11 1122455
Q ss_pred eCCC-CEEEEEeCCCcEEEEEeCCC-CCc---------c-ccce----------EEEeecCCCCeEEEEE-------EEE
Q 003360 292 DGTS-RVLVSGDQSGMVRIFKLKYE-PHA---------I-ENSF----------LSFTGSKKGNSHIIHS-------VKV 342 (826)
Q Consensus 292 sp~~-~~Lasgs~dg~V~iwd~~~~-~~~---------~-~~~~----------~~i~~s~~~~~~~~~~-------~~~ 342 (826)
.|++ ..+++.+.||.+.+|++... ... . .... ..+..+.++....+.- ...
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~ 238 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGP 238 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEE
T ss_pred cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccc
Confidence 6654 56677777888877777532 110 0 0000 0000011111000000 000
Q ss_pred eec-----------cCCeEEEEEccCCCEEEEEec-----------CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 343 MKI-----------NGSIISLNMNRNSQHLAVGSD-----------QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 343 ~~~-----------~~~V~~l~~s~~g~~lasGs~-----------dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
... ......++|++++.++.++.. .+.|.+||+.+++++.+... +. +.+++|+
T Consensus 239 ~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~---~~--p~~ia~s 313 (361)
T 2oiz_A 239 WSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG---RD--ALSMTID 313 (361)
T ss_dssp EESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC---TT--CCEEEEE
T ss_pred ccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec---CC--eeEEEEC
Confidence 000 011112789999888887654 34899999999998865542 22 8899999
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECCCC--ceEEee
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSDNG--NMLSTN 435 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg--~~i~~~ 435 (826)
| |+.+|++++. ++|.+||..++ +.+.++
T Consensus 314 p------dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 314 Q------QRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp T------TTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred C------CCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 9 6899998886 99999999999 888774
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.01 E-value=3.9e-07 Score=97.80 Aligned_cols=212 Identities=10% Similarity=0.091 Sum_probs=135.7
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECC----CcEEEEeC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD----GAINFWDV 260 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D----GtVriWD~ 260 (826)
+..+...+..++|+++++.++++. ++.|.+|+........+...+...+.+ ++++++++++...+ +.|.+||.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 445566778999999999777776 788999976554444332234556666 89999998888777 78999999
Q ss_pred CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS----GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d----g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
.+.....+ +.. ..+...+..++++|+++++++...+ +...||.+.... +..
T Consensus 120 ~~~~~~~~--~~~------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~---------------~~~-- 174 (333)
T 2dg1_A 120 NGDNLQDI--IED------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF---------------RTV-- 174 (333)
T ss_dssp TSCSCEEE--ECS------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS---------------CCE--
T ss_pred CCCEEEEE--Ecc------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC---------------CEE--
Confidence 65553211 110 0133579999999999888776542 234556554211 011
Q ss_pred EEEEEEeeccCCeEEEEEccCCCEEEE-EecCCeEEEEecCC-CeeEEee--ec---ccCCCCCeeEEEEeecccCCCCC
Q 003360 337 IHSVKVMKINGSIISLNMNRNSQHLAV-GSDQGYVYLLDTEG-PTVLYQK--HI---ASDISSGIVSLQFETCSLQGFEK 409 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g~~las-Gs~dG~V~vwD~~~-~~~l~~~--~~---~~~~~~~V~sl~f~~~~~~~~d~ 409 (826)
.........+..++|+|+|+.+++ .+.++.|.+||+.. +..+... .. ..++ ..+..+++++ ++
T Consensus 175 ---~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~------~G 244 (333)
T 2dg1_A 175 ---TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS------DD 244 (333)
T ss_dssp ---EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT------TC
T ss_pred ---EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECC------CC
Confidence 111112235788999999986654 45678999999963 3322111 00 0111 3567788877 47
Q ss_pred cEEEEEECCCcEEEEECCCCceEEee
Q 003360 410 NFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 410 ~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.++++...++.|.+||.. ++.+..+
T Consensus 245 ~l~v~~~~~~~v~~~d~~-g~~~~~~ 269 (333)
T 2dg1_A 245 NLYVAMYGQGRVLVFNKR-GYPIGQI 269 (333)
T ss_dssp CEEEEEETTTEEEEECTT-SCEEEEE
T ss_pred CEEEEEcCCCEEEEECCC-CCEEEEE
Confidence 766666677899999984 7776665
No 177
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.99 E-value=1.8e-07 Score=98.28 Aligned_cols=238 Identities=9% Similarity=0.052 Sum_probs=154.6
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccC-CCEEEEEEeeCCCeEEEecCCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLD-SSITAMKLITGNSFILSSADEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~ 224 (826)
..+++...++.+++||..+= +....++.+. ..+..+.++|+|+.++ +.+..+..|+.....
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG-----------------~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~ 67 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTK-----------------EIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITRDGRE 67 (276)
T ss_dssp EEEEECTTCSEEEEEETTTT-----------------EEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTTSCE
T ss_pred cEEEeeCCCCEEEEEECCCC-----------------eEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECCCCCE
Confidence 45566677899999987441 1223334444 4678889999999888 446778888765544
Q ss_pred eeecccccCCccee--eCCCCCEEEEEEC-CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 225 LLDFETKLKDGSQS--HSKVKNLFITGHS-DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 225 ~~~~~~~h~g~V~~--~s~~~~~l~Tgs~-DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
+..+..+....+.+ +.++|+++++.+. ++.|..+|..++.+ ..+.... ....+......+++.+++.++++.
T Consensus 68 ~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l---~~~~~~~--~~~~~~~~~~~v~~~~~G~~lv~~ 142 (276)
T 3no2_A 68 LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVL---SKTEFET--GIERPHAQFRQINKNKKGNYLVPL 142 (276)
T ss_dssp EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEE---EEEEECC--SCSSGGGSCSCCEECTTSCEEEEE
T ss_pred EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEE---EEEeccC--CCCcccccccCceECCCCCEEEEe
Confidence 55553322234444 8899999999888 78888888766653 2222110 011111244566789999999999
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
..++.|..||.. ++. +........+.++.+.++|..+++++.++.|..+|..+++.+
T Consensus 143 ~~~~~v~~~d~~-G~~----------------------~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 143 FATSEVREIAPN-GQL----------------------LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp TTTTEEEEECTT-SCE----------------------EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred cCCCEEEEECCC-CCE----------------------EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence 999999999986 322 111222345667788899999999888899999999999999
Q ss_pred EeeecccC---CCCCeeEEEEeecccCCCCCcEEEEEEC----------CCcEEEEECCCCceEEeee
Q 003360 382 YQKHIASD---ISSGIVSLQFETCSLQGFEKNFLVIATK----------DSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 382 ~~~~~~~~---~~~~V~sl~f~~~~~~~~d~~~l~sgs~----------Dg~V~iwd~~tg~~i~~~~ 436 (826)
++...... ....+..+...+ ++.++++... ++.+.-++ .+|+.+-++.
T Consensus 200 w~~~~~~~~~~~l~~~~~~~~~~------~G~i~v~~~~g~~~~~~~~~~~~~~~~~-~~g~~~W~~~ 260 (276)
T 3no2_A 200 RRVNANDIEGVQLFFVAQLFPLQ------NGGLYICNWQGHDREAGKGKHPQLVEID-SEGKVVWQLN 260 (276)
T ss_dssp EEEEGGGSBSCCCSEEEEEEECT------TSCEEEEEECTTCTTGGGSCCCSEEEEC-TTSBEEEEEC
T ss_pred EEecCCCCCCccccccccceEcC------CCCEEEEeccCccccccccCCceEEEEC-CCCCEEEEec
Confidence 77653211 112255555555 4777666531 22344444 3688887764
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.97 E-value=9.3e-06 Score=93.97 Aligned_cols=235 Identities=9% Similarity=0.076 Sum_probs=142.5
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccC--
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKS-- 221 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~-- 221 (826)
+..+++...++.+.++|..+. .....++. ...+..+.|+|+++++++++ |+.|.+|+..
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~-----------------~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~ 228 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTY-----------------EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 228 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTC-----------------CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred ceEEEEeCCCCeEEEEECCCC-----------------eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 345556667799999998761 11122332 23466899999999999888 8899999763
Q ss_pred CCceeecccccCCccee--eC----CCCCEEEEE-ECCCcEEEEeCCCCceeeeeecccc--cccccccCC-CCeEEEEE
Q 003360 222 VPPLLDFETKLKDGSQS--HS----KVKNLFITG-HSDGAINFWDVSCPLFLLILSLKQQ--SEKDFSLSG-IPLTALYY 291 (826)
Q Consensus 222 ~~~~~~~~~~h~g~V~~--~s----~~~~~l~Tg-s~DGtVriWD~s~~~~~~i~~l~~~--~~~~~~~h~-~~V~~l~f 291 (826)
....... .....+... ++ |+|++++++ ..+++|.|+|..... ++..+.-. .......|. ..|..+.+
T Consensus 229 t~~~v~~-i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 229 EPTTVAE-IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SCCEEEE-EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCcEeEE-EecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc--EEEEEeccccccccccccCCCceEEEEE
Confidence 3222211 111111122 88 699876665 456999999984333 22222210 001011122 36888999
Q ss_pred eCCCCEEEEE-eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCe
Q 003360 292 DGTSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGY 369 (826)
Q Consensus 292 sp~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~ 369 (826)
++++..+++. ..+|.|.++|+..... .. +...........+.|+|+|+++++++ .++.
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~-----------------~~---v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~ 365 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNN-----------------LK---TTEISAERFLHDGGLDGSHRYFITAANARNK 365 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSE-----------------EE---EEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCcc-----------------ce---eeeeeccccccCceECCCCCEEEEEeCCCCe
Confidence 9987665554 5568999999863211 11 22222233467889999999887766 5789
Q ss_pred EEEEecCCCeeEEeeec-cc-CCCCCeeEEEE-eecccCCCCCcEEEEEE--CCCcEEEEECCC
Q 003360 370 VYLLDTEGPTVLYQKHI-AS-DISSGIVSLQF-ETCSLQGFEKNFLVIAT--KDSSVLVLDSDN 428 (826)
Q Consensus 370 V~vwD~~~~~~l~~~~~-~~-~~~~~V~sl~f-~~~~~~~~d~~~l~sgs--~Dg~V~iwd~~t 428 (826)
|.+||+.+++++..... .. .|.. ....| .| ++..+++.+ .+++|.+||..+
T Consensus 366 V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p------~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 366 LVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHP------TFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEETTTTEEEEEEECSSSSBCCT--TCEEEEET------TTEEEEEEEBSSSSEEEEEECCT
T ss_pred EEEEECCCCcEEEEEeccCcCCCCc--cceeeECC------CCCcEEEeCCCCCCeEEEecCCC
Confidence 99999999988755543 11 1221 12233 44 344455444 468999999987
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.97 E-value=1e-08 Score=112.65 Aligned_cols=198 Identities=7% Similarity=-0.005 Sum_probs=124.6
Q ss_pred EEEEEEeeCCCeEEEec--CC--cEEEeccCCCceeecccccCCcce-e-eCCCCCEEEEEECCCcEEEEeCCCCceeee
Q 003360 195 ITAMKLITGNSFILSSA--DE--DYSLLAKSVPPLLDFETKLKDGSQ-S-HSKVKNLFITGHSDGAINFWDVSCPLFLLI 268 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~--d~--~i~~w~~~~~~~~~~~~~h~g~V~-~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i 268 (826)
+..++|+|+|+.++... ++ .+.+|+........+..++..... . |+|+++.|+.++.++.|++||+.+.....+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 55678999999988764 33 466666554444433222222232 2 899999999999999999999955543332
Q ss_pred eecccccccccccCCCCeEE-------------------EEEeCCCCEEEEE-----eCCCcEEEEEeCCCCCccccceE
Q 003360 269 LSLKQQSEKDFSLSGIPLTA-------------------LYYDGTSRVLVSG-----DQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 269 ~~l~~~~~~~~~~h~~~V~~-------------------l~fsp~~~~Lasg-----s~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
.... ...... +.|+|+++.++.+ ..+..|.+||+.++..
T Consensus 118 ~~~~----------~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~------- 180 (396)
T 3c5m_A 118 YTVD----------EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL------- 180 (396)
T ss_dssp EECC----------TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE-------
T ss_pred Eecc----------cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE-------
Confidence 2221 111111 3457777766554 3556788888764322
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEcc-CCCEEEEEecC------CeEEEEecCCCeeEEeeecccCC-CCCeeE
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQ------GYVYLLDTEGPTVLYQKHIASDI-SSGIVS 396 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~d------G~V~vwD~~~~~~l~~~~~~~~~-~~~V~s 396 (826)
.....+...+..+.|+| ++..|+..+.+ ..|.+||+.++.... +.... ...+..
T Consensus 181 ---------------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~---l~~~~~~~~~~~ 242 (396)
T 3c5m_A 181 ---------------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK---IKEHAEGESCTH 242 (396)
T ss_dssp ---------------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE---SSCCCTTEEEEE
T ss_pred ---------------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE---eeccCCCccccc
Confidence 11223456789999999 78878777654 368889987665431 11111 235777
Q ss_pred EEEeecccCCCCCcEEEEEECC-----CcEEEEECCCCceEE
Q 003360 397 LQFETCSLQGFEKNFLVIATKD-----SSVLVLDSDNGNMLS 433 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~D-----g~V~iwd~~tg~~i~ 433 (826)
+.|+| |+..|+.++.+ +.|++||+.+|+...
T Consensus 243 ~~~sp------dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (396)
T 3c5m_A 243 EFWIP------DGSAMAYVSYFKGQTDRVIYKANPETLENEE 278 (396)
T ss_dssp EEECT------TSSCEEEEEEETTTCCEEEEEECTTTCCEEE
T ss_pred eEECC------CCCEEEEEecCCCCccceEEEEECCCCCeEE
Confidence 89998 68877766544 459999999887543
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.91 E-value=1.1e-07 Score=104.35 Aligned_cols=155 Identities=9% Similarity=0.017 Sum_probs=93.1
Q ss_pred ccCCCEEEEEEee-CCCeEEEec-C------CcEEEeccCCCceeecccccC-C-ccee--eCCCCCEEEEEECC-----
Q 003360 190 FLDSSITAMKLIT-GNSFILSSA-D------EDYSLLAKSVPPLLDFETKLK-D-GSQS--HSKVKNLFITGHSD----- 252 (826)
Q Consensus 190 ~h~~~Vt~~~fs~-~~~~l~~~~-d------~~i~~w~~~~~~~~~~~~~h~-g-~V~~--~s~~~~~l~Tgs~D----- 252 (826)
.+...+..+.|+| ++..++... + ..+.+|+........+ ..+. + .+.. |+|+++.|+.++.+
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (396)
T 3c5m_A 185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI-KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD 263 (396)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES-SCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe-eccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence 4566788999999 788776644 2 2455555443333333 1222 1 2433 99999977766554
Q ss_pred CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEe----------------CCCcEEEEEeCCC
Q 003360 253 GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGD----------------QSGMVRIFKLKYE 315 (826)
Q Consensus 253 GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs----------------~dg~V~iwd~~~~ 315 (826)
+.|.+||+.......+.... ... +.|+| +++++++++ .++.|.+||+.++
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~------------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMVMP------------PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEEEEECTTTCCEEEEEECC------------SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred ceEEEEECCCCCeEEeeeCC------------CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 45999999554432221111 123 88999 999888765 3467999998744
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccC-----------CeEEEEEccCCCEEEEEec-CCe--EEEEecCCCee
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKING-----------SIISLNMNRNSQHLAVGSD-QGY--VYLLDTEGPTV 380 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~-----------~V~~l~~s~~g~~lasGs~-dG~--V~vwD~~~~~~ 380 (826)
... ....+.. .+..++|+|+|+.|++++. ++. |.++|+.++..
T Consensus 331 ~~~----------------------~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 331 SAQ----------------------KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp BCC----------------------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred ceE----------------------EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 320 1111111 2566789999998887775 444 44555555543
No 181
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.91 E-value=1.5e-07 Score=98.99 Aligned_cols=194 Identities=9% Similarity=0.062 Sum_probs=130.8
Q ss_pred CCCeEEEec-CCcEEEeccCC-CceeecccccC-Cccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccccccc
Q 003360 203 GNSFILSSA-DEDYSLLAKSV-PPLLDFETKLK-DGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEK 277 (826)
Q Consensus 203 ~~~~l~~~~-d~~i~~w~~~~-~~~~~~~~~h~-g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~ 277 (826)
.++.+++++ ++.|.+|+... ..+..+. .+. ..+.+ +.|+|++|+ +.++.|..||.++.. +..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~---~W~~~~---- 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP-LEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRE---LWNIAA---- 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE-CCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCE---EEEEEC----
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC-CCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCE---EEEEcC----
Confidence 356677777 99999998743 3344442 222 23444 899999999 457889999996554 233331
Q ss_pred ccccCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc
Q 003360 278 DFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR 356 (826)
Q Consensus 278 ~~~~h~~~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~ 356 (826)
.+...+.++.+.++++++++.+. ++.|..++.. ++ .+..+...... .........+++.+
T Consensus 74 ---~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk-----~l~~~~~~~~~----------~~~~~~~~~v~~~~ 134 (276)
T 3no2_A 74 ---PAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GE-----VLSKTEFETGI----------ERPHAQFRQINKNK 134 (276)
T ss_dssp ---CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SC-----EEEEEEECCSC----------SSGGGSCSCCEECT
T ss_pred ---CCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CC-----EEEEEeccCCC----------CcccccccCceECC
Confidence 12246888999999999999887 6666655542 11 11111110000 01122345567899
Q ss_pred CCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 357 NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 357 ~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
+|.++++.+.++.|.+||.. ++.+++.... ..+.++.+.+ +++++++++.++.|..||..+|+.+.++.
T Consensus 135 ~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~----~~~~~~~~~~------~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 135 KGNYLVPLFATSEVREIAPN-GQLLNSVKLS----GTPFSSAFLD------NGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEEECS----SCCCEEEECT------TSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CCCEEEEecCCCEEEEECCC-CCEEEEEECC----CCccceeEcC------CCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 99999999999999999998 8888766532 3444555555 58888888888899999999999998874
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.90 E-value=2.2e-07 Score=111.27 Aligned_cols=154 Identities=8% Similarity=-0.051 Sum_probs=96.7
Q ss_pred eCCCCCEEEEEEC-----CCcEEEEeCCC------CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC---
Q 003360 239 HSKVKNLFITGHS-----DGAINFWDVSC------PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS--- 304 (826)
Q Consensus 239 ~s~~~~~l~Tgs~-----DGtVriWD~s~------~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d--- 304 (826)
|+|+|++|+.++. +..|.+||+.. +.. ....+ ..+...+.. .|+|++..|+..+..
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l--------~~~~~~~~~-~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKL--------IDNFEGEYD-YVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEE--------ECSSSSCEE-EEEEETTEEEEEECTTCT
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEe--------eCCCCcEEE-EEeccCCEEEEEECCCCC
Confidence 9999998888765 56899999843 210 00111 123334444 488898887766553
Q ss_pred -CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc--CCeEEEEEccCCCEEEEEecCCe--EEEEecCCCe
Q 003360 305 -GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN--GSIISLNMNRNSQHLAVGSDQGY--VYLLDTEGPT 379 (826)
Q Consensus 305 -g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~--~~V~~l~~s~~g~~lasGs~dG~--V~vwD~~~~~ 379 (826)
+.|.+|++.+.... .. .....+. ..+..++|++++.+++++..||. |.+||+.+++
T Consensus 310 ~~~l~~~d~~~~~~~---~~----------------~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 310 NYRLINIDFTDPEES---KW----------------KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp TCEEEEEETTSCCGG---GC----------------EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred CCEEEEEeCCCCCcc---cc----------------eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence 35888888743210 00 1111222 24778899988878888888985 5667776676
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEE-EEEC---CCcEEEEECCCCc
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLV-IATK---DSSVLVLDSDNGN 430 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~-sgs~---Dg~V~iwd~~tg~ 430 (826)
.+.... .+...|..+.+++ ++..++ +.++ .++|+.||+.+|+
T Consensus 371 ~~~~l~---~~~~~v~~~~~s~------d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 371 LLKIFP---LEVGSVVGYSGQK------KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEC---CCSSEEEEEECCT------TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEecC---CCCceEEEEecCC------CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 554333 2355677787876 455444 4333 4689999999887
No 183
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.89 E-value=2.4e-08 Score=109.51 Aligned_cols=172 Identities=11% Similarity=0.113 Sum_probs=120.5
Q ss_pred CEEEEEEeeCCCeEEEecCCcEEEeccCCCc---------eee-cccccCCccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 194 SITAMKLITGNSFILSSADEDYSLLAKSVPP---------LLD-FETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~---------~~~-~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
+++.+++++....+++|+...+.+|+..... +.. ...++.+ |.. | ++++|+++ .+|.|++||+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 6888999999999999984455558532111 111 1234556 777 7 99999999 88999999984
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
.... .. ....|..+|..+.+.+.. +++++.||.|.+||+..+.. ..
T Consensus 115 sl~~--~~--------~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~----------------------~~ 160 (388)
T 1xip_A 115 ELSE--FR--------TVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKST----------------------KQ 160 (388)
T ss_dssp STTC--EE--------EEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCE----------------------EE
T ss_pred hhhc--cC--------ccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcc----------------------cc
Confidence 3221 01 112345568887776553 99999999999999984322 11
Q ss_pred EeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCee--EEeeec----cc--CCCCCeeEEEEeecccCCCCCcEEE
Q 003360 342 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV--LYQKHI----AS--DISSGIVSLQFETCSLQGFEKNFLV 413 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~--l~~~~~----~~--~~~~~V~sl~f~~~~~~~~d~~~l~ 413 (826)
+...|+|++|||.| +++|..||++++|+..+..+ ..+... .. +|...|.++.|.+ ++.+++
T Consensus 161 ---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~------~~~flv 229 (388)
T 1xip_A 161 ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS------PQDFLA 229 (388)
T ss_dssp ---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS------SSEEEE
T ss_pred ---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec------CCeEEE
Confidence 24579999999999 78899999999999988775 322311 11 3678899999998 366666
Q ss_pred E
Q 003360 414 I 414 (826)
Q Consensus 414 s 414 (826)
+
T Consensus 230 ~ 230 (388)
T 1xip_A 230 V 230 (388)
T ss_dssp E
T ss_pred E
Confidence 5
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.89 E-value=4e-07 Score=96.14 Aligned_cols=222 Identities=9% Similarity=0.023 Sum_probs=140.2
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCce
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPL 225 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~ 225 (826)
.+++.+..+.|+.||... . ...+..+...+.+++++++++.+++.. ++.|.+|+......
T Consensus 42 l~~~~~~~~~i~~~~~~~----------------~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDG----------------Q---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp EEEEEGGGTEEEEEETTS----------------C---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred EEEEeCCCCEEEEEECCC----------------C---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 345666778899888765 1 112344566789999999999877766 67899997644333
Q ss_pred eecccccC----Cccee--eCCCCCEEEEEEC-----------------CCcEEEEeCCCCceeeeeecccccccccccC
Q 003360 226 LDFETKLK----DGSQS--HSKVKNLFITGHS-----------------DGAINFWDVSCPLFLLILSLKQQSEKDFSLS 282 (826)
Q Consensus 226 ~~~~~~h~----g~V~~--~s~~~~~l~Tgs~-----------------DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h 282 (826)
..+..... ..+.. ++++|++++|... .+.|..||.. ..... + ..+
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~---~--------~~~ 170 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA---P--------IRD 170 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE---E--------ECC
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE---e--------ecC
Confidence 33311111 12333 8999999998331 2344444444 22111 1 122
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccce-EEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEE
Q 003360 283 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF-LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL 361 (826)
Q Consensus 283 ~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~-~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 361 (826)
...+..++|+|+++.|++.+.++.|.+|++..... + . ... .. ....+.+.+|+++++|.++
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~-----~~~---------~~~---~~-~~~~~~p~~i~~d~~G~l~ 232 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE-----TEY---------QGV---HF-TVEPGKTDGLRVDAGGLIW 232 (296)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC-----EEE---------EEE---EE-CCSSSCCCSEEEBTTSCEE
T ss_pred CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc-----CcC---------CCe---Ee-eCCCCCCCeEEECCCCCEE
Confidence 34678999999999997777889999999962100 1 0 000 11 1234456789999999865
Q ss_pred EEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe-ecccCCCCCcEEEEEECCCcEEEEECCCCce
Q 003360 362 AVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE-TCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 362 asGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~-~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
++. ++.|.+||.. ++.+.... .+.. +++++|. + ++..|++++.++ +.-++..+.++
T Consensus 233 v~~--~~~v~~~~~~-g~~~~~~~---~~~~-~~~~~f~~~------d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 233 ASA--GDGVHVLTPD-GDELGRVL---TPQT-TSNLCFGGP------EGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEE--TTEEEEECTT-SCEEEEEE---CSSC-CCEEEEEST------TSCEEEEEETTE-EEEEECSCCBC
T ss_pred EEc--CCeEEEECCC-CCEEEEEE---CCCC-ceeEEEECC------CCCEEEEEcCCe-EEEEEcccccc
Confidence 555 8889999996 55553333 2333 8889995 4 578899988764 66667665543
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.87 E-value=5.5e-07 Score=93.22 Aligned_cols=196 Identities=10% Similarity=0.006 Sum_probs=125.9
Q ss_pred CEEEEEEeeCCCeEE-Eec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeee
Q 003360 194 SITAMKLITGNSFIL-SSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLIL 269 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~ 269 (826)
....+++.+++...+ +.. ++.|..|+............+...+.+ ++++++++++.. ++.|.+||..+.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-- 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-- 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE--
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee--
Confidence 567888999998665 434 778888865443322221122223344 888999777766 8999999986554211
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCe
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSI 349 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V 349 (826)
+. ......+..+++++++.++++...++.|.+|+..+.... .........+
T Consensus 102 -~~-------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~---------------------~~~~~~~~~p 152 (270)
T 1rwi_B 102 -LP-------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT---------------------VLPFTGLNDP 152 (270)
T ss_dssp -CC-------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE---------------------ECCCCSCCSC
T ss_pred -ee-------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE---------------------eeccccCCCc
Confidence 11 011257899999999998887777888988864422110 0000112346
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
.+|+++++|.++++...++.|.+||..+....... ......+..+++.+ ++.++++...++.|.+|+..+.
T Consensus 153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~---~~~~~~p~~i~~d~------~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP---FTDITAPWGIAVDE------AGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp CCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC---CSSCCSEEEEEECT------TCCEEEEETTTSCEEEECTTCS
T ss_pred eeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec---ccCCCCceEEEECC------CCCEEEEECCCCcEEEEcCCCC
Confidence 88999999987777777889999999877654221 12225678888887 4655555556789999998754
Q ss_pred c
Q 003360 430 N 430 (826)
Q Consensus 430 ~ 430 (826)
.
T Consensus 224 ~ 224 (270)
T 1rwi_B 224 T 224 (270)
T ss_dssp C
T ss_pred c
Confidence 3
No 186
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.87 E-value=1.7e-06 Score=94.59 Aligned_cols=136 Identities=12% Similarity=0.038 Sum_probs=88.0
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccccccccccc--CCCCeEEEEEeCCCCEEEEEeC-----------CC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSL--SGIPLTALYYDGTSRVLVSGDQ-----------SG 305 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~--h~~~V~~l~fsp~~~~Lasgs~-----------dg 305 (826)
+++++..++..+.+|.|.+||+.......+..+.......... .......++|+|++..++++.. ++
T Consensus 207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 207 PALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp CEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred ecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence 5667777777788999999999544322211111000000000 0011223789999888777643 35
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCC--eeEEe
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP--TVLYQ 383 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~--~~l~~ 383 (826)
.|.+||+.+.+. +....... +.+++|+|+|++|++++. ++|.|||..++ +++.+
T Consensus 287 ~v~viD~~t~~~----------------------v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 287 EIWVMDTKTKQR----------------------VARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp EEEEEETTTTEE----------------------EEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred eEEEEECCCCcE----------------------EEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence 899999874422 33334445 899999999999998887 99999999999 87744
Q ss_pred eecccCCCCCeeEEEEee
Q 003360 384 KHIASDISSGIVSLQFET 401 (826)
Q Consensus 384 ~~~~~~~~~~V~sl~f~~ 401 (826)
.. ........+.+.|
T Consensus 343 i~---~~G~~P~~~~~~p 357 (361)
T 2oiz_A 343 IE---GAAEASLQVQFHP 357 (361)
T ss_dssp ET---TSCSSEEEEEECC
T ss_pred ec---cCCCCcEEEEecC
Confidence 32 3445667788877
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.86 E-value=4.7e-07 Score=108.39 Aligned_cols=208 Identities=6% Similarity=-0.030 Sum_probs=133.0
Q ss_pred cCCCEEEEEEeeCCCeEEEec--CC----cEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCc--------
Q 003360 191 LDSSITAMKLITGNSFILSSA--DE----DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGA-------- 254 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~--d~----~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGt-------- 254 (826)
|...+..++|+|||+.++.+. ++ .|++|+............+. .+.+ |+||++.|+.++.|+.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccc
Confidence 334688899999999998755 22 78888766544443211111 1333 9999999999988877
Q ss_pred --------EEEEeCCCCce--eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEEeCC-----
Q 003360 255 --------INFWDVSCPLF--LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-----SGMVRIFKLKY----- 314 (826)
Q Consensus 255 --------VriWD~s~~~~--~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-----dg~V~iwd~~~----- 314 (826)
|++|++.+... .+++.. ..|...+..+.|+|++++|+.++. +..|.+||+.+
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~--------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEF--------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECC--------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccCCCCEEEEEECCCCcccceEEecc--------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 99999944331 111111 123456789999999999888765 56899999874
Q ss_pred -CCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC----CeEEEEecCCCee--EEeeecc
Q 003360 315 -EPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ----GYVYLLDTEGPTV--LYQKHIA 387 (826)
Q Consensus 315 -~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d----G~V~vwD~~~~~~--l~~~~~~ 387 (826)
+.. .. .....+...+.. .|+++|..|++.+.. +.|.+||+.++.. .....
T Consensus 274 ~~~~---------------~~-----~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~-- 330 (710)
T 2xdw_A 274 TGIL---------------KW-----VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV-- 330 (710)
T ss_dssp CSSC---------------CC-----EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--
T ss_pred CCcc---------------ce-----EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--
Confidence 210 01 112222333444 488899888776653 3699999987641 11111
Q ss_pred cCCC-CCeeEEEEeecccCCCCCcEEEEEECCC--cEEEEECCCCceEEeee
Q 003360 388 SDIS-SGIVSLQFETCSLQGFEKNFLVIATKDS--SVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 388 ~~~~-~~V~sl~f~~~~~~~~d~~~l~sgs~Dg--~V~iwd~~tg~~i~~~~ 436 (826)
.... ..+..+.|.+ ++.++++...|+ .|.+|+..+|+.+..+.
T Consensus 331 ~~~~~~~~~~~~~~~------~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 331 PEHEKDVLEWVACVR------SNFLVLCYLHDVKNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp CCCSSCEEEEEEEET------TTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred CCCCCCeEEEEEEEc------CCEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence 1222 3577788875 367778888888 46778887788766653
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.86 E-value=3.5e-07 Score=94.77 Aligned_cols=196 Identities=8% Similarity=0.024 Sum_probs=131.7
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeee
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILS 270 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~ 270 (826)
..+..+++.+++...++..++.|..|+........+.........+ ++++++++++...++.|.+||........
T Consensus 67 ~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~--- 143 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV--- 143 (270)
T ss_dssp CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE---
T ss_pred CCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe---
Confidence 3567788999988555544778888876554433331122233444 88899999888889999999873332100
Q ss_pred cccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE-eeccCCe
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV-MKINGSI 349 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~-~~~~~~V 349 (826)
.. ......+..|+++++++++++...++.|.+|+...... ... ......+
T Consensus 144 ~~-------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~----------------------~~~~~~~~~~p 194 (270)
T 1rwi_B 144 LP-------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ----------------------VVLPFTDITAP 194 (270)
T ss_dssp CC-------CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE----------------------EECCCSSCCSE
T ss_pred ec-------cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce----------------------EeecccCCCCc
Confidence 01 01123578899999999777777788999999763321 100 0112457
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCC
Q 003360 350 ISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 429 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg 429 (826)
.+|+++++|.++++...++.|.+||..+..... ....+...+.++++.+ ++.++++...+++|++|+....
T Consensus 195 ~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~---~~~~~~~~p~~i~~~~------~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 195 WGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV---LPFTGLNTPLAVAVDS------DRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEEECTTCCEEEEETTTSCEEEECTTCSCCEE---CCCCSCSCEEEEEECT------TCCEEEEEGGGTEEEEECCCGG
T ss_pred eEEEECCCCCEEEEECCCCcEEEEcCCCCccee---eccCCCCCceeEEECC------CCCEEEEECCCCEEEEEcCCCc
Confidence 899999999777777778899999997665442 1122335688899987 5777777778999999998743
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.86 E-value=6.5e-06 Score=86.09 Aligned_cols=200 Identities=7% Similarity=0.023 Sum_probs=131.6
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccc-cCCccee--eCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETK-LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~-h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
.+...+..+++.+++...++.. ++.+..|+... ....+..+ ....+.+ +.++++++++...++.|.+||..+...
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~ 132 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIR 132 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEE
Confidence 3456788999999998777766 67788886542 22222111 2233444 788999999888889999999844331
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
. ..+. .+...+..+++.+++.++++...++.|..||. .+.. .. ......
T Consensus 133 -~-~~~~--------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~------~~--------------~~~~~~ 181 (299)
T 2z2n_A 133 -E-YELP--------NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI------TE--------------FKIPTP 181 (299)
T ss_dssp -E-EECS--------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE------EE--------------EECSST
T ss_pred -E-ecCC--------CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE------EE--------------eeCCCC
Confidence 1 1111 12357899999999988887777788888887 3221 00 101111
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
...+.+++++++|.+.++...++.|.+||. ++.... ... ......+.++.+.+ ++.++++...++.|..||
T Consensus 182 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~~~------~g~l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 182 ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKI-PTPNARPHAITAGA------GIDLWFTEWGANKIGRLT 252 (299)
T ss_dssp TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECS------TTCEEEEETTTTEEEEEE
T ss_pred CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EEC-CCCCCCceeEEECC------CCCEEEeccCCceEEEEC
Confidence 335789999999987666667889999999 666442 211 23445788899987 466444444678999999
Q ss_pred CCCCce
Q 003360 426 SDNGNM 431 (826)
Q Consensus 426 ~~tg~~ 431 (826)
. ++..
T Consensus 253 ~-~g~~ 257 (299)
T 2z2n_A 253 S-NNII 257 (299)
T ss_dssp T-TTEE
T ss_pred C-CCce
Confidence 8 4643
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.79 E-value=5.3e-06 Score=86.78 Aligned_cols=203 Identities=5% Similarity=0.008 Sum_probs=136.7
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccc-cCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETK-LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~-h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
++.+...+.++++.+++...++.. ++.+..|+.. .....+..+ +...+.+ +.++++++++...++.|..||..+.
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~ 88 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI 88 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc
Confidence 455667899999999998777666 6788888765 344433211 2344445 7889999888887899999998643
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
.. . ..+. .....+..+++.+++.++++...++.|.+||.. +.. .. ....
T Consensus 89 ~~-~-~~~~--------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~------~~--------------~~~~ 137 (299)
T 2z2n_A 89 IK-E-YTLP--------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GKI------RE--------------YELP 137 (299)
T ss_dssp EE-E-EECS--------STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE------EE--------------EECS
T ss_pred EE-E-EeCC--------CcCCCceeeEECCCCCEEEEecCCceEEEECCC-CCE------EE--------------ecCC
Confidence 21 1 1111 123578999999999888887778889888862 211 00 1111
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.....+.++++.++|.+.++...++.|.+||. +++... ... ......+..+++.+ ++.++++...++.|.+
T Consensus 138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~~~------~g~l~v~~~~~~~i~~ 208 (299)
T 2z2n_A 138 NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKI-PTPASGPVGITKGN------DDALWFVEIIGNKIGR 208 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECT------TSSEEEEETTTTEEEE
T ss_pred CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeC-CCCCCcceeEEECC------CCCEEEEccCCceEEE
Confidence 12345889999999987777777889999999 666542 111 22344677888887 4665444445788999
Q ss_pred EECCCCceE
Q 003360 424 LDSDNGNML 432 (826)
Q Consensus 424 wd~~tg~~i 432 (826)
||. +++..
T Consensus 209 ~~~-~g~~~ 216 (299)
T 2z2n_A 209 ITT-SGEIT 216 (299)
T ss_dssp ECT-TCCEE
T ss_pred ECC-CCcEE
Confidence 999 67754
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.78 E-value=3.4e-07 Score=98.72 Aligned_cols=186 Identities=11% Similarity=0.121 Sum_probs=117.2
Q ss_pred CCEEEEEEeeCCCeEEEec-C---CcEEEe--ccCCCceeecccccCCccee--eCCCCCEEEEEECC------------
Q 003360 193 SSITAMKLITGNSFILSSA-D---EDYSLL--AKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSD------------ 252 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d---~~i~~w--~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D------------ 252 (826)
..+...+|+|+|+.++..+ + +...+| +........+ ..+.. +.+ |+|+++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l-~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI-LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE-EEESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE-EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 4678899999999998866 3 444444 4443333333 22223 555 99999988887643
Q ss_pred ---------------CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-------cEEEE
Q 003360 253 ---------------GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-------MVRIF 310 (826)
Q Consensus 253 ---------------GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-------~V~iw 310 (826)
..|.+||+.+... +..+. . . .+..++|+|++ +++++..++ ...||
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~--~~~l~--------~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~ 203 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEV--IEEFE--------K-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIY 203 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEE--EEEEE--------E-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeE--Eeeec--------C-C-CcccccCCCCe-EEEEEecccccccccccccEE
Confidence 5688899855542 01121 1 2 56789999999 888776653 45666
Q ss_pred EeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC--------CeEEEEecCCCeeEE
Q 003360 311 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ--------GYVYLLDTEGPTVLY 382 (826)
Q Consensus 311 d~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d--------G~V~vwD~~~~~~l~ 382 (826)
.+.++. . .....+ ..+.++ +|+|++|++++.+ ..|.+|| +++..
T Consensus 204 ~~d~~~-----------------~-----~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~- 255 (347)
T 2gop_A 204 IWEDGK-----------------E-----EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM- 255 (347)
T ss_dssp EEETTE-----------------E-----EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-
T ss_pred EeCCCc-----------------e-----EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-
Confidence 654111 1 111112 344444 9999999887754 4688888 45443
Q ss_pred eeecccCCCCCeeE-EEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 383 QKHIASDISSGIVS-LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 383 ~~~~~~~~~~~V~s-l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
.+...+...+.. +.|+ . + ++++++.++.+++| ..+|+..
T Consensus 256 --~l~~~~~~~~~~~~~~s-d------g-~~~~~~~~~~~~l~-~~~g~~~ 295 (347)
T 2gop_A 256 --GILDEVDRGVGQAKIKD-G------K-VYFTLFEEGSVNLY-IWDGEIK 295 (347)
T ss_dssp --ESSTTCCSEEEEEEEET-T------E-EEEEEEETTEEEEE-EESSSEE
T ss_pred --eccccCCcccCCccEEc-C------c-EEEEEecCCcEEEE-EcCCceE
Confidence 222345556665 6665 2 6 88899999999999 7766653
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.78 E-value=6.6e-07 Score=106.86 Aligned_cols=205 Identities=10% Similarity=0.036 Sum_probs=124.4
Q ss_pred ccCCCEEEEEEeeCCCeEEEe-----c-CCcEEEeccCCCceeecccccCCcc--ee--eCCCCCEEEEEECCCc-----
Q 003360 190 FLDSSITAMKLITGNSFILSS-----A-DEDYSLLAKSVPPLLDFETKLKDGS--QS--HSKVKNLFITGHSDGA----- 254 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~-----~-d~~i~~w~~~~~~~~~~~~~h~g~V--~~--~s~~~~~l~Tgs~DGt----- 254 (826)
.|...+..++|||||+.++.+ + +..|++|+......... .+...+ .. |+|+++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 344568899999999999853 2 35799997665443301 111222 22 9999999999999887
Q ss_pred --------EEEEeCCCCce--eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEeCCCCCccccc
Q 003360 255 --------INFWDVSCPLF--LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG--MVRIFKLKYEPHAIENS 322 (826)
Q Consensus 255 --------VriWD~s~~~~--~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg--~V~iwd~~~~~~~~~~~ 322 (826)
|++|++.+... .+++.. ..+...+..+.|+|++++|+.++.++ ...||-+...
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~--------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~------- 260 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHER--------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG------- 260 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECC--------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT-------
T ss_pred ccCCCCCEEEEEECCCCchhceEEEec--------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC-------
Confidence 99999944431 122211 12345788999999999888877665 3444443211
Q ss_pred eEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe---cCCeEEEEecCCCee---EEeeecccCCCCCeeE
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS---DQGYVYLLDTEGPTV---LYQKHIASDISSGIVS 396 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs---~dG~V~vwD~~~~~~---l~~~~~~~~~~~~V~s 396 (826)
.+.. .....+...+....+ ++|.+++... .++.|.+||+.++.. ..... ......+..
T Consensus 261 --------~~~~-----~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~l~~ 324 (695)
T 2bkl_A 261 --------EKDF-----RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP--EDSSASLLS 324 (695)
T ss_dssp --------CSSC-----EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC--CCSSCEEEE
T ss_pred --------CCce-----EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec--CCCCCeEEE
Confidence 1111 122223344555556 5666444443 258999999977642 11111 112445666
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECC-CCceEEe
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSD-NGNMLST 434 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~-tg~~i~~ 434 (826)
+.|.. +.++++...|+..++|... +|+.+..
T Consensus 325 ~~~~~-------~~lv~~~~~dg~~~l~~~~~~g~~~~~ 356 (695)
T 2bkl_A 325 VSIVG-------GHLSLEYLKDATSEVRVATLKGKPVRT 356 (695)
T ss_dssp EEEET-------TEEEEEEEETTEEEEEEEETTCCEEEE
T ss_pred EEEEC-------CEEEEEEEECCEEEEEEEeCCCCeeEE
Confidence 77753 7788888999987777544 3554444
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.78 E-value=9.5e-07 Score=95.11 Aligned_cols=228 Identities=11% Similarity=0.107 Sum_probs=142.3
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL 226 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~ 226 (826)
+++...++.|.+||..+.+ ....++ .......++++++++..++.. ++.|.+|+.....+.
T Consensus 57 yv~~~~~~~v~viD~~t~~-----------------~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 57 WIVVNNSHVIFAIDINTFK-----------------EVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp EEEEGGGTEEEEEETTTCC-----------------EEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred EEEEcCCCEEEEEECcccE-----------------EEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 3444456889999987621 111122 235678889999985555553 888999976654333
Q ss_pred e-ccccc----CCccee--eCCCCCEEEEEE-CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEE
Q 003360 227 D-FETKL----KDGSQS--HSKVKNLFITGH-SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL 298 (826)
Q Consensus 227 ~-~~~~h----~g~V~~--~s~~~~~l~Tgs-~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L 298 (826)
. +..+. ...... + .++.++++.. .+++|.+||...... +..+. . +.....+.++|+++++
T Consensus 119 ~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~--~~~i~--------~-g~~p~~i~~~~dG~l~ 186 (328)
T 3dsm_A 119 GYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKV--VDELT--------I-GIQPTSLVMDKYNKMW 186 (328)
T ss_dssp EEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEE--EEEEE--------C-SSCBCCCEECTTSEEE
T ss_pred EEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeE--EEEEE--------c-CCCccceEEcCCCCEE
Confidence 2 21111 001222 4 4455556554 489999999954442 12222 1 1244678899999877
Q ss_pred EEEeCC----------CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec--cCCeEEEEEccCCCEEEEEec
Q 003360 299 VSGDQS----------GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI--NGSIISLNMNRNSQHLAVGSD 366 (826)
Q Consensus 299 asgs~d----------g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~--~~~V~~l~~s~~g~~lasGs~ 366 (826)
+++..+ +.|.+||..++.. ...... ......|+|+|++++|.++..
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v----------------------~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAETFTV----------------------EKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTTTEE----------------------EEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EEECCCccCCccccCCceEEEEECCCCeE----------------------EEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 776654 7899999874321 111111 235899999999998888765
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE----ECCCcEEEEECCCCceEEeee
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA----TKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg----s~Dg~V~iwd~~tg~~i~~~~ 436 (826)
.|.+||..++++.. .............++++|. ++.+.++. ..++.|.+||.. |+.+.++.
T Consensus 245 --~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~-----~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 245 --DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPN-----NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp --SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTT-----TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred --EEEEEECCCCceee-eeeecCCCCceEEEEEcCC-----CCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 89999998887641 1111112456788999873 24444444 468899999998 99888864
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.76 E-value=5e-06 Score=96.24 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=106.6
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeC--CCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLK--YEP 316 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~--~~~ 316 (826)
..+.+.++++...+++|.+||...... +..+. .+..+..+.|+|+++++++++.|+.|.+||+. +..
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v--~~~i~---------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~ 231 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEI--KTVLD---------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT 231 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCE--EEEEE---------CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeE--EEEEe---------CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc
Confidence 344556788888899999999954442 22222 22467799999999999999999999999985 221
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEc----cCCCEEEEEec-CCeEEEEecCCCeeEEeeecccC--
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN----RNSQHLAVGSD-QGYVYLLDTEGPTVLYQKHIASD-- 389 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s----~~g~~lasGs~-dG~V~vwD~~~~~~l~~~~~~~~-- 389 (826)
. +...........++|+ |+|++++++++ +++|.|||..+.+++........
T Consensus 232 ~----------------------v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~ 289 (567)
T 1qks_A 232 T----------------------VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 289 (567)
T ss_dssp E----------------------EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred E----------------------eEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc
Confidence 1 2222223346789999 69998877665 59999999999988865543210
Q ss_pred -----C-CCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCc
Q 003360 390 -----I-SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 430 (826)
Q Consensus 390 -----~-~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~ 430 (826)
| ...+..+.+++. ...+++....+|.|.++|..+.+
T Consensus 290 ~~~~~~p~~rva~i~~s~~-----~~~~vv~~~~~g~v~~vd~~~~~ 331 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHY-----RPEFIVNVKETGKILLVDYTDLN 331 (567)
T ss_dssp TTCCEESCCCEEEEEECSS-----SSEEEEEETTTTEEEEEETTCSS
T ss_pred ccccccCCCceEEEEEcCC-----CCEEEEEecCCCeEEEEecCCCc
Confidence 1 124666777662 24455555667899999987654
No 195
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.72 E-value=1.4e-05 Score=85.57 Aligned_cols=223 Identities=13% Similarity=0.064 Sum_probs=133.2
Q ss_pred EEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-C----CcEEEeccCCC
Q 003360 149 LLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-D----EDYSLLAKSVP 223 (826)
Q Consensus 149 iv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d----~~i~~w~~~~~ 223 (826)
++....+.|++||...- ..... ...+...+.+++++++++.+++.. + +.|.+|+....
T Consensus 60 ~~~~~~~~i~~~d~~~~----------------~~~~~-~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 60 LLDVFEGNIFKINPETK----------------EIKRP-FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp EEETTTCEEEEECTTTC----------------CEEEE-EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred EEECCCCEEEEEeCCCC----------------cEEEE-eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 34566788999987541 00111 123456799999999998777765 4 47888875544
Q ss_pred ceeec-c-cccCCccee--eCCCCCEEEEEEC------CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC
Q 003360 224 PLLDF-E-TKLKDGSQS--HSKVKNLFITGHS------DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG 293 (826)
Q Consensus 224 ~~~~~-~-~~h~g~V~~--~s~~~~~l~Tgs~------DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp 293 (826)
....+ . ..+...+.+ ++++++++++... .+.|..||..+..... +. .+...+..++|+|
T Consensus 123 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~--------~~~~~~~~i~~~~ 191 (333)
T 2dg1_A 123 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP---II--------QNISVANGIALST 191 (333)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE---EE--------EEESSEEEEEECT
T ss_pred EEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE---ee--------cCCCcccceEECC
Confidence 33322 1 122334444 8999998887654 2455556654433211 11 1113578999999
Q ss_pred CCCEEEE-EeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEE
Q 003360 294 TSRVLVS-GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYL 372 (826)
Q Consensus 294 ~~~~Las-gs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~v 372 (826)
+++.|++ .+.++.|.+|++..... .+..+. ... .........+..++++++|.++++...++.|.+
T Consensus 192 dg~~l~v~~~~~~~i~~~d~~~~g~----~~~~~~------~~~---~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~ 258 (333)
T 2dg1_A 192 DEKVLWVTETTANRLHRIALEDDGV----TIQPFG------ATI---PYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLV 258 (333)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSS----SEEEEE------EEE---EEECCSSSEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCCEEEEEeCCCCeEEEEEecCCCc----Cccccc------ceE---EEecCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 9986654 45678999999863211 000000 000 000011135788999999988777778899999
Q ss_pred EecCCCeeEEeeeccc---CCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 373 LDTEGPTVLYQKHIAS---DISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 373 wD~~~~~~l~~~~~~~---~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
||.. ++.+....... ++...+.+++|++ |+..|++++.++
T Consensus 259 ~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~------dg~~L~v~~~~g 301 (333)
T 2dg1_A 259 FNKR-GYPIGQILIPGRDEGHMLRSTHPQFIP------GTNQLIICSNDI 301 (333)
T ss_dssp ECTT-SCEEEEEECTTGGGTCSCBCCEEEECT------TSCEEEEEEECG
T ss_pred ECCC-CCEEEEEEcCCCccccccCcceEEECC------CCCEEEEEeCcc
Confidence 9984 55553333211 1222678899986 577788777664
No 196
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.71 E-value=3.3e-06 Score=90.89 Aligned_cols=143 Identities=6% Similarity=-0.009 Sum_probs=91.6
Q ss_pred CEEEEEEeeCCCeEEEec-CC-------cEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECC--------CcEEE
Q 003360 194 SITAMKLITGNSFILSSA-DE-------DYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSD--------GAINF 257 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~-d~-------~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~D--------GtVri 257 (826)
.+..+.|+|++ .++++. +. ...+|.........+ ..+ +.+.+++|+|+.|+.++.+ ..|.+
T Consensus 172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l-~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~ 248 (347)
T 2gop_A 172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKM-FEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYI 248 (347)
T ss_dssp TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEE-EEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEE
T ss_pred CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEe-ccC-cceeeECCCCCEEEEEEccccCCccccceEEE
Confidence 67788999999 766664 32 445663222233333 223 3333478999988877754 36778
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEE-EEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEE
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTA-LYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHI 336 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~-l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~ 336 (826)
|| ++... .+. ..+...|.. +.|+ ++ ++++++.++.++|| +..+. .
T Consensus 249 ~d-~~~~~----~l~-------~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-----------------~-- 294 (347)
T 2gop_A 249 YD-GKEVM----GIL-------DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-----------------I-- 294 (347)
T ss_dssp EC-SSCEE----ESS-------TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS-----------------E--
T ss_pred EC-CCceE----ecc-------ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc-----------------e--
Confidence 88 43321 111 234467776 8999 88 99999999999999 86211 1
Q ss_pred EEEEEEeeccCCeEEEEEccCCCEEEEEecCCeE-EEEecCCCe
Q 003360 337 IHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYV-YLLDTEGPT 379 (826)
Q Consensus 337 ~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V-~vwD~~~~~ 379 (826)
.......+.|.+++|++ .++++++.++.. .||.+. ++
T Consensus 295 ---~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 295 ---KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp ---EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred ---EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 22223356689999999 577777777664 677665 44
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.69 E-value=4.4e-06 Score=89.86 Aligned_cols=197 Identities=9% Similarity=0.002 Sum_probs=121.4
Q ss_pred EEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeec
Q 003360 195 ITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL 271 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l 271 (826)
...+.+. .++..++.. ++.+.+|+......... .+....... ++++++++++...++.|.+||....... ..+
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~-i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~--~~i 121 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR-ITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT--GYI 121 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-EECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE--EEE
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-cCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE--EEE
Confidence 4555553 333334444 78899997765444322 121222333 7688876666658999999999554421 122
Q ss_pred ccccccccccCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCe
Q 003360 272 KQQSEKDFSLSGIPLTALYYDGTSRVLVSGD--QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSI 349 (826)
Q Consensus 272 ~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs--~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V 349 (826)
... .-.........|++ ++..|.++. .++.|.+||..++.. ..........
T Consensus 122 ~~g---~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~----------------------~~~i~~g~~p 174 (328)
T 3dsm_A 122 ECP---DMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV----------------------VDELTIGIQP 174 (328)
T ss_dssp ECT---TCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE----------------------EEEEECSSCB
T ss_pred EcC---CccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE----------------------EEEEEcCCCc
Confidence 210 00001113446666 344555554 488999999984422 1222223345
Q ss_pred EEEEEccCCCEEEEEecC----------CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 350 ISLNMNRNSQHLAVGSDQ----------GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 350 ~~l~~s~~g~~lasGs~d----------G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
..++++++|++++++..+ +.|.+||..++++....... ....+..++|++ |+..|+++..
T Consensus 175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~--~g~~p~~la~~~------d~~~lyv~~~-- 244 (328)
T 3dsm_A 175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK--LGDWPSEVQLNG------TRDTLYWINN-- 244 (328)
T ss_dssp CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC--TTCCCEEEEECT------TSCEEEEESS--
T ss_pred cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC--CCCCceeEEEec------CCCEEEEEcc--
Confidence 678999999866666554 78999999999877544432 123678899998 5888888755
Q ss_pred cEEEEECCCCceE
Q 003360 420 SVLVLDSDNGNML 432 (826)
Q Consensus 420 ~V~iwd~~tg~~i 432 (826)
.|.+||..+++..
T Consensus 245 ~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 245 DIWRMPVEADRVP 257 (328)
T ss_dssp SEEEEETTCSSCC
T ss_pred EEEEEECCCCcee
Confidence 8999999988764
No 198
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.65 E-value=1.4e-05 Score=84.80 Aligned_cols=207 Identities=13% Similarity=0.001 Sum_probs=124.5
Q ss_pred ecccCCCEEEEEEeeCCC-eEEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 188 MPFLDSSITAMKLITGNS-FILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~-~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
+...........|+++++ .+++.. ++.+..|+... ....+ ..+.+.+.. ++++|+++++.+.++.|.+||..+.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~~~~~-~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~ 117 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-TVDVL-LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQ 117 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-CEEEE-EESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-CEEEE-eCCCCccceeeECCCCCEEEEECCCCEEEEECCCCC
Confidence 444555667889999998 455555 77888886533 33333 223344444 8999998887777789999998643
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE----EeC-------------CCcEEEEEeCCCCCccccceEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS----GDQ-------------SGMVRIFKLKYEPHAIENSFLSF 326 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las----gs~-------------dg~V~iwd~~~~~~~~~~~~~~i 326 (826)
.. .+.... . ......+..++++|+++++++ |.. .+.|..|+..++..
T Consensus 118 ~~-~~~~~~-~-----~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--------- 181 (305)
T 3dr2_A 118 AH-LLVGRY-A-----GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--------- 181 (305)
T ss_dssp EE-EEECEE-T-----TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC---------
T ss_pred EE-EEEecc-C-----CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE---------
Confidence 31 111100 0 011145778999999998886 432 13344444322211
Q ss_pred eecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC------CeEEEEecCCCeeEEeee-cccCCCCCeeEEEE
Q 003360 327 TGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ------GYVYLLDTEGPTVLYQKH-IASDISSGIVSLQF 399 (826)
Q Consensus 327 ~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d------G~V~vwD~~~~~~l~~~~-~~~~~~~~V~sl~f 399 (826)
.. +. .......++|+|+++.|+++... +.|.+||+.... +.... ........+..+.+
T Consensus 182 --------~~---~~---~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~ 246 (305)
T 3dr2_A 182 --------QR---MA---DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCV 246 (305)
T ss_dssp --------EE---EE---EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEE
T ss_pred --------EE---Ee---cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEE
Confidence 11 11 22346789999999988877665 789999997654 21111 11111223445666
Q ss_pred eecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 400 ETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 400 ~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
.+ +++ |++++.++ |.+|+.. |+.+..+.
T Consensus 247 d~------~G~-lwv~~~~g-v~~~~~~-g~~~~~~~ 274 (305)
T 3dr2_A 247 DR------GGW-LWSSSGTG-VCVFDSD-GQLLGHIP 274 (305)
T ss_dssp CT------TSC-EEECCSSE-EEEECTT-SCEEEEEE
T ss_pred CC------CCC-EEEecCCc-EEEECCC-CCEEEEEE
Confidence 66 466 67766555 9999985 88777654
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.65 E-value=1.1e-05 Score=85.12 Aligned_cols=209 Identities=10% Similarity=0.079 Sum_probs=126.5
Q ss_pred CCEEEEEEeeCCCeEEE-------ec-CCcEEEeccCCCceeeccc----ccCCccee--eCCC-CCEEEEEECCCcEEE
Q 003360 193 SSITAMKLITGNSFILS-------SA-DEDYSLLAKSVPPLLDFET----KLKDGSQS--HSKV-KNLFITGHSDGAINF 257 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~-------~~-d~~i~~w~~~~~~~~~~~~----~h~g~V~~--~s~~-~~~l~Tgs~DGtVri 257 (826)
.....++|.+++..+++ +. ++.|..|+........+.. ++.+.+.+ ++++ ++++++... +.|.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-LGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-TEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-CCEEE
Confidence 45578889988887777 34 7889999754434433311 13344555 7888 776666554 47889
Q ss_pred EeCCCCceeeeeec-ccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-------------cEEEEEeCCCCCccccce
Q 003360 258 WDVSCPLFLLILSL-KQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-------------MVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 258 WD~s~~~~~~i~~l-~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-------------~V~iwd~~~~~~~~~~~~ 323 (826)
||.. ..... + ... .. ......+.+++++++++++++...++ ...||.+...
T Consensus 97 ~d~~-g~~~~---~~~~~-~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 161 (314)
T 1pjx_A 97 VQTD-GTFEE---IAKKD-SE--GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-------- 161 (314)
T ss_dssp EETT-SCEEE---CCSBC-TT--SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--------
T ss_pred EeCC-CCEEE---EEecc-CC--CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--------
Confidence 9987 44211 1 100 00 11224688999999998887766552 1344544421
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEc----cCCCEEEEE-ecCCeEEEEecC-CCeeEE--eeecccCCC-CCe
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMN----RNSQHLAVG-SDQGYVYLLDTE-GPTVLY--QKHIASDIS-SGI 394 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s----~~g~~lasG-s~dG~V~vwD~~-~~~~l~--~~~~~~~~~-~~V 394 (826)
+.. ............++|+ ++++.+.++ ..++.|.+||+. .+.... .......+. ..+
T Consensus 162 --------g~~-----~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p 228 (314)
T 1pjx_A 162 --------GQM-----IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA 228 (314)
T ss_dssp --------SCE-----EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred --------CCE-----EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCC
Confidence 111 1111122346889999 999665554 567899999986 454321 111111222 456
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
..+++.+ ++.++++...++.|.+||..+|+.+..+.
T Consensus 229 ~~i~~d~------~G~l~v~~~~~~~i~~~d~~~g~~~~~~~ 264 (314)
T 1pjx_A 229 DGMDFDE------DNNLLVANWGSSHIEVFGPDGGQPKMRIR 264 (314)
T ss_dssp EEEEEBT------TCCEEEEEETTTEEEEECTTCBSCSEEEE
T ss_pred CceEECC------CCCEEEEEcCCCEEEEEcCCCCcEeEEEe
Confidence 7788887 57766666678899999998888766653
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.65 E-value=5.7e-06 Score=98.72 Aligned_cols=191 Identities=11% Similarity=0.022 Sum_probs=115.2
Q ss_pred eeCCCeEEEec-CC---cEEEeccC--CCceeec------ccccCCccee--eCCCCCEEE-----EEECCCcEEEEeCC
Q 003360 201 ITGNSFILSSA-DE---DYSLLAKS--VPPLLDF------ETKLKDGSQS--HSKVKNLFI-----TGHSDGAINFWDVS 261 (826)
Q Consensus 201 s~~~~~l~~~~-d~---~i~~w~~~--~~~~~~~------~~~h~g~V~~--~s~~~~~l~-----Tgs~DGtVriWD~s 261 (826)
+++|..++... ++ ...+|... .+....+ ..+|...+.+ |+|||++|+ .|+.+.+|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47788776644 32 35556321 2111111 1134434555 999999998 45556789999995
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc-------------EEEEEeCCCCCccccceEEEee
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM-------------VRIFKLKYEPHAIENSFLSFTG 328 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~-------------V~iwd~~~~~~~~~~~~~~i~~ 328 (826)
+... +... .........++|+||++.|+.++.|.. |++|++.++....
T Consensus 156 tg~~-----~~~~-----~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~--------- 216 (695)
T 2bkl_A 156 SGEW-----SKVD-----VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD--------- 216 (695)
T ss_dssp TCCB-----CSSC-----CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC---------
T ss_pred CCCC-----cCCc-----ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc---------
Confidence 5542 1000 011112267899999999999998876 9999987553210
Q ss_pred cCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCC----eEEEEecCCCeeEEeeecccCCCCCeeEEEEeeccc
Q 003360 329 SKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG----YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSL 404 (826)
Q Consensus 329 s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG----~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~ 404 (826)
... .....+...+.++.|||+|++|++++.++ .|++||..++...... .+...+....+ +
T Consensus 217 -----~lv---~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~----~~~~~~~~~~~-~--- 280 (695)
T 2bkl_A 217 -----TVV---HERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV----KGVGAKYEVHA-W--- 280 (695)
T ss_dssp -----EEE---ECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEE----ECSSCCEEEEE-E---
T ss_pred -----eEE---EecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEee----cCCCceEEEEe-c---
Confidence 100 01111234688999999999999888776 6778876555433111 22334444445 3
Q ss_pred CCCCCcEEEEEEC----CCcEEEEECCCCc
Q 003360 405 QGFEKNFLVIATK----DSSVLVLDSDNGN 430 (826)
Q Consensus 405 ~~~d~~~l~sgs~----Dg~V~iwd~~tg~ 430 (826)
++. ++..+. ++.|.+||+.++.
T Consensus 281 ---~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 281 ---KDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp ---TTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred ---CCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 356 555554 5789999998775
No 201
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.63 E-value=6.5e-07 Score=98.08 Aligned_cols=170 Identities=14% Similarity=0.112 Sum_probs=112.3
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeee-eecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLI-LSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH 317 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i-~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~ 317 (826)
+++.+.++++|+.|+ +++|++........ .....+....+ .+.. |+.|+| ++.+|+++ .++.|++||+..-..
T Consensus 45 is~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~ 118 (388)
T 1xip_A 45 ISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSE 118 (388)
T ss_dssp EETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTC
T ss_pred EcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhc
Confidence 888899999999985 55698621110000 00000000111 2335 999999 89999999 889999999984322
Q ss_pred ccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEE
Q 003360 318 AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSL 397 (826)
Q Consensus 318 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl 397 (826)
. -....+..+|.++.+.+.. +|+++.||.|.+||+..+.... +...|+++
T Consensus 119 ~---------------------~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v 168 (388)
T 1xip_A 119 F---------------------RTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-------LAQNVTSF 168 (388)
T ss_dssp E---------------------EEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-------EEESEEEE
T ss_pred c---------------------CccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-------ccCCceEE
Confidence 1 1112334567777776543 8999999999999999887652 23479999
Q ss_pred EEeecccCCCCCcEEEEEECCCcEEEEECCCCce--EEeeec----c--CCCCCcceEEEEec
Q 003360 398 QFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNM--LSTNLI----H--PKKPSRALFMQILN 452 (826)
Q Consensus 398 ~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~--i~~~~~----~--~~~~~~~lsi~~l~ 452 (826)
+|+|. | +++|..||++++|+..++.+ ..++.. + ......+.++..+.
T Consensus 169 ~WSpk------G--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~ 223 (388)
T 1xip_A 169 DVTNS------Q--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS 223 (388)
T ss_dssp EECSS------E--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred EEcCC------c--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec
Confidence 99993 5 78899999999999987665 444421 1 11235566666664
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.59 E-value=1.4e-05 Score=84.52 Aligned_cols=200 Identities=9% Similarity=0.114 Sum_probs=124.5
Q ss_pred cCCCEEEEEEeeC-CCeEEEecCCcEEEeccCCCceeec-ccc---c-CCccee--eCCCCCEEEEEECC----------
Q 003360 191 LDSSITAMKLITG-NSFILSSADEDYSLLAKSVPPLLDF-ETK---L-KDGSQS--HSKVKNLFITGHSD---------- 252 (826)
Q Consensus 191 h~~~Vt~~~fs~~-~~~l~~~~d~~i~~w~~~~~~~~~~-~~~---h-~g~V~~--~s~~~~~l~Tgs~D---------- 252 (826)
+...+..+++.++ +...++.....+..|+.. .....+ ... + ...+.+ ++++++++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred CCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence 4456889999999 665555544466677655 333322 111 1 122444 88999988887765
Q ss_pred -----CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEe----CCCCEEEEE-eCCCcEEEEEeCC-CCCcccc
Q 003360 253 -----GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYD----GTSRVLVSG-DQSGMVRIFKLKY-EPHAIEN 321 (826)
Q Consensus 253 -----GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fs----p~~~~Lasg-s~dg~V~iwd~~~-~~~~~~~ 321 (826)
+.|..||..+.. .. +. .+......++|+ |+++.|.++ ..++.|.+|++.. +..
T Consensus 148 ~~~~~~~l~~~~~~g~~-~~---~~--------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~---- 211 (314)
T 1pjx_A 148 MQEKFGSIYCFTTDGQM-IQ---VD--------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI---- 211 (314)
T ss_dssp TSSSCEEEEEECTTSCE-EE---EE--------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE----
T ss_pred ccCCCCeEEEECCCCCE-EE---ec--------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc----
Confidence 566677765322 11 10 111356789999 999765555 5678999999762 110
Q ss_pred ceEEEeecCCCCeEEEEEEEEeecc-CCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVMKIN-GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~~~~-~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
... ... .....+. ..+..++++++|.++++...++.|.+||..+++.+.... .+...+.+++|+
T Consensus 212 --~~~-------~~~---~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~i~~~ 276 (314)
T 1pjx_A 212 --ENK-------KVW---GHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFK 276 (314)
T ss_dssp --EEE-------EEE---EECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEEC
T ss_pred --ccc-------eEE---EECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe---CCCCCceeEEEC
Confidence 000 000 0111111 457889999999888877788999999998666553333 234578899997
Q ss_pred ecccCCCCCcEEEEEE-CCCcEEEEECCC
Q 003360 401 TCSLQGFEKNFLVIAT-KDSSVLVLDSDN 428 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs-~Dg~V~iwd~~t 428 (826)
+ ++..|++++ .++.|..|+...
T Consensus 277 ~------dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 277 P------QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp T------TSSEEEEEETTTTEEEEEECSS
T ss_pred C------CCCEEEEEeCCCCeEEEEeCCC
Confidence 7 578676665 457899999864
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.57 E-value=2e-05 Score=83.19 Aligned_cols=215 Identities=9% Similarity=0.035 Sum_probs=129.1
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCcee
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLL 226 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~ 226 (826)
.+++-...+.|+.||...- .... -.+...+.++++.+++++ +.+.+..+.+|+.....+.
T Consensus 27 l~~~d~~~~~i~~~d~~~~----------------~~~~---~~~~~~~~~i~~~~dG~l-~v~~~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 27 LLFVDIPAKKVCRWDSFTK----------------QVQR---VTMDAPVSSVALRQSGGY-VATIGTKFCALNWKEQSAV 86 (297)
T ss_dssp EEEEETTTTEEEEEETTTC----------------CEEE---EECSSCEEEEEEBTTSSE-EEEETTEEEEEETTTTEEE
T ss_pred EEEEECCCCEEEEEECCCC----------------cEEE---EeCCCceEEEEECCCCCE-EEEECCeEEEEECCCCcEE
Confidence 3444556788888887651 0011 122357899999999994 4445556777765443333
Q ss_pred ecccc----cCCccee--eCCCCCEEEEEECC---------CcEEEEeC--CCCceeeeeecccccccccccCCCCeEEE
Q 003360 227 DFETK----LKDGSQS--HSKVKNLFITGHSD---------GAINFWDV--SCPLFLLILSLKQQSEKDFSLSGIPLTAL 289 (826)
Q Consensus 227 ~~~~~----h~g~V~~--~s~~~~~l~Tgs~D---------GtVriWD~--s~~~~~~i~~l~~~~~~~~~~h~~~V~~l 289 (826)
.+... ....+.. ++++|+++++...+ ...+||.+ .+... . +. .+....+.+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~---~~--------~~~~~pngi 154 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-K---YF--------DQVDISNGL 154 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-E---EE--------EEESBEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-E---Ee--------eccccccce
Confidence 32111 1122333 89999987765432 33455555 33221 1 10 111356789
Q ss_pred EEeCCCCEEEE-EeCCCcEEEEEeC--CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec
Q 003360 290 YYDGTSRVLVS-GDQSGMVRIFKLK--YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD 366 (826)
Q Consensus 290 ~fsp~~~~Las-gs~dg~V~iwd~~--~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~ 366 (826)
+|+|+++.|++ .+.++.|.+|++. .+.... .... .......+.+..++++++|.+.++...
T Consensus 155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~-------------~~~~---~~~~~~~~~p~g~~~d~~G~lwva~~~ 218 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN-------------RRSV---YKLEKEEQIPDGMCIDAEGKLWVACYN 218 (297)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE-------------EEEE---EECCGGGCEEEEEEEBTTSCEEEEEET
T ss_pred EEcCCCCEEEEecCCCCcEEEEeccCCCCcccC-------------cEEE---EECCCCCCCCCeeEECCCCCEEEEEcC
Confidence 99999987654 5557889999984 211100 0000 111112345788999999987777778
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe-ecccCCCCCcEEEEEECC
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE-TCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~-~~~~~~~d~~~l~sgs~D 418 (826)
++.|.+||..+++++..... ....+++++|. + |+..|++.+..
T Consensus 219 ~~~v~~~d~~tG~~~~~i~~---p~~~~t~~~f~g~------d~~~L~vt~~~ 262 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVKL---PVDKTTSCCFGGK------NYSEMYVTCAR 262 (297)
T ss_dssp TTEEEEECTTTCCEEEEEEC---SSSBEEEEEEESG------GGCEEEEEEBC
T ss_pred CCEEEEEcCCCceEEEEEEC---CCCCceEEEEeCC------CCCEEEEEcCC
Confidence 88999999988888755543 33578999998 5 46777776653
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.57 E-value=0.00011 Score=76.54 Aligned_cols=201 Identities=6% Similarity=0.033 Sum_probs=128.7
Q ss_pred ccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccc-cCCccee--eCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 190 FLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETK-LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~-h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
.+...+..+++.+++...++.. ++.|..|+.. .....+..+ ....+.+ +.++++++++...++.|..||..+...
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~ 137 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIY 137 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEE
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEE
Confidence 3446788899999998777665 6778888655 333333121 2233444 788899988888789999999873331
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
. ..+. .....+..+++.+++++.++...++.|..|+.. +.. .. ......
T Consensus 138 -~-~~~~--------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~------~~--------------~~~~~~ 186 (300)
T 2qc5_A 138 -E-YDLP--------NKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GKL------EE--------------YPLPTN 186 (300)
T ss_dssp -E-EECS--------STTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCE------EE--------------EECSST
T ss_pred -E-ccCC--------CCCCCceeEEECCCCCEEEEecCCCeEEEECCC-CcE------EE--------------eeCCCC
Confidence 1 1111 123578999999999977666667888888763 211 00 111111
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
...+.+++++++|.+.++....+.|.+||. ++..... .. ......+.++++.+ ++.+.++...++.|..||
T Consensus 187 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~-~~~~~~~~~i~~d~------~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 187 AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DI-PTPNARPHAITAGK------NSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-EC-SSTTCCEEEEEECS------TTCEEEEETTTTEEEEEC
T ss_pred CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-EC-CCCCCCceEEEECC------CCCEEEeccCCCeEEEEC
Confidence 235889999999986666666788999998 5544421 11 22345678888887 466444444568999999
Q ss_pred CCCCceE
Q 003360 426 SDNGNML 432 (826)
Q Consensus 426 ~~tg~~i 432 (826)
. +|+..
T Consensus 258 ~-~g~~~ 263 (300)
T 2qc5_A 258 N-DNTIQ 263 (300)
T ss_dssp T-TSCEE
T ss_pred C-CCcEE
Confidence 8 46543
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.53 E-value=8.4e-05 Score=77.53 Aligned_cols=204 Identities=6% Similarity=0.031 Sum_probs=133.1
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccc-cCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETK-LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~-h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
++.....+.++.+.+++...++.. ++.|..|+.. ..+..+..+ ....+.+ +.++++++++...++.|..||..+.
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~ 93 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGG 93 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCC
Confidence 345566788999999998777765 7888888765 333333122 1233444 7888998888877899999998733
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 343 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 343 (826)
. .. +.+. .....+..+++.+++.++++...++.|..|+.. +.. .. ....
T Consensus 94 ~-~~-~~~~--------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~------~~--------------~~~~ 142 (300)
T 2qc5_A 94 F-TE-YPLP--------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI------YE--------------YDLP 142 (300)
T ss_dssp E-EE-EECS--------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE------EE--------------EECS
T ss_pred e-EE-ecCC--------CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE------EE--------------ccCC
Confidence 2 11 1111 123578999999999988877778888888765 211 00 1111
Q ss_pred eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.....+.++++.++|.+.++...++.|.+||. +++... ... ......+..+.+.+ ++.+.++....+.|.+
T Consensus 143 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~------~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 143 NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPL-PTNAAAPVGITSGN------DGALWFVEIMGNKIGR 213 (300)
T ss_dssp STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECT------TSSEEEEETTTTEEEE
T ss_pred CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeC-CCCCCCcceEEECC------CCCEEEEccCCCEEEE
Confidence 12345889999999986666666889999998 555442 221 23345677888877 4655444445678999
Q ss_pred EECCCCceEE
Q 003360 424 LDSDNGNMLS 433 (826)
Q Consensus 424 wd~~tg~~i~ 433 (826)
|+. +|+...
T Consensus 214 ~~~-~g~~~~ 222 (300)
T 2qc5_A 214 ITT-TGEISE 222 (300)
T ss_dssp ECT-TCCEEE
T ss_pred EcC-CCcEEE
Confidence 998 566543
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.49 E-value=2.1e-05 Score=94.50 Aligned_cols=202 Identities=9% Similarity=0.041 Sum_probs=123.0
Q ss_pred CCEEEEEEeeCCCeEEEec--C----CcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCc----------
Q 003360 193 SSITAMKLITGNSFILSSA--D----EDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGA---------- 254 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d----~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGt---------- 254 (826)
..+...+|+|||+.++.+. + ..|++|+......... ..+...+.. |+|+ +.|+.++.|+.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCC
Confidence 3678899999999998865 2 2588887665544432 111111123 9999 98888887765
Q ss_pred ----EEEEeCCCCce--eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEeCCCCCccccce
Q 003360 255 ----INFWDVSCPLF--LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-----MVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 255 ----VriWD~s~~~~--~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-----~V~iwd~~~~~~~~~~~~ 323 (826)
|++|++.+... .+++.. ..+...+..+.|+|++++|+..+.++ .|.+||+.++..
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~--------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~------ 306 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFAT--------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI------ 306 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECC--------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE------
T ss_pred CCCEEEEEECCCCchhCEEEecc--------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC------
Confidence 88999843321 111111 12223588999999999988877554 799999874310
Q ss_pred EEEeecCCCC-eEEEEEEEEeeccCCeEEEEEccCCCEEEEEec----CCeEEEEecCCCe-eEEeeecccCCCCCeeEE
Q 003360 324 LSFTGSKKGN-SHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD----QGYVYLLDTEGPT-VLYQKHIASDISSGIVSL 397 (826)
Q Consensus 324 ~~i~~s~~~~-~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~----dG~V~vwD~~~~~-~l~~~~~~~~~~~~V~sl 397 (826)
. . .........+... ++|+|..|++.+. ++.|.+||+.++. ... .+...+...+..+
T Consensus 307 ---------~~~-----~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--~l~~~~~~~l~~~ 369 (741)
T 1yr2_A 307 ---------GPV-----TALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFD--TVVPESKDNLESV 369 (741)
T ss_dssp ---------CCC-----EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEE--EEECCCSSEEEEE
T ss_pred ---------ccc-----EEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccE--EEecCCCCeEEEE
Confidence 0 0 1112222333443 3488888888776 3559999998752 221 1112334445566
Q ss_pred EEeecccCCCCCcEEEEEECCCcEEEEECC-CCceEEe
Q 003360 398 QFETCSLQGFEKNFLVIATKDSSVLVLDSD-NGNMLST 434 (826)
Q Consensus 398 ~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~-tg~~i~~ 434 (826)
.|.. +.++++...|+..+||... +|+.+..
T Consensus 370 ~~~~-------~~lv~~~~~dg~~~l~~~~~~g~~~~~ 400 (741)
T 1yr2_A 370 GIAG-------NRLFASYIHDAKSQVLAFDLDGKPAGA 400 (741)
T ss_dssp EEEB-------TEEEEEEEETTEEEEEEEETTSCEEEE
T ss_pred EEEC-------CEEEEEEEECCEEEEEEEeCCCCceee
Confidence 6653 6778888889876666443 3555544
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.49 E-value=8.3e-05 Score=78.42 Aligned_cols=208 Identities=9% Similarity=-0.017 Sum_probs=127.1
Q ss_pred CCEEEEEEeeCCCeE-EEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeee
Q 003360 193 SSITAMKLITGNSFI-LSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLI 268 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l-~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i 268 (826)
.-.-...|+++...+ ++.. .+.|..|+........ +.+.+.+.+ ++++++++++. ++.|.+||........+
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--VTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--EECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--EeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEE
Confidence 344567788865544 4444 7788888765444332 233455656 89999966653 56899999965554332
Q ss_pred eecccccccccccCCCCeEEEEEeCCCCEEEEEeCC---------CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 269 LSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS---------GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 269 ~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d---------g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
..... ......++.++++|+++++++.... ..-.||.+... +...
T Consensus 89 ~~~~~------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~----------------g~~~---- 142 (297)
T 3g4e_A 89 ATVDN------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD----------------HHVK---- 142 (297)
T ss_dssp EECCT------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT----------------SCEE----
T ss_pred EecCC------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC----------------CCEE----
Confidence 22210 0112468899999999977654332 34567777522 1111
Q ss_pred EEEeeccCCeEEEEEccCCCEEE-EEecCCeEEEEec--CCCeeEEe--eecccCCCCCeeEEEEeecccCCCCCcEEEE
Q 003360 340 VKVMKINGSIISLNMNRNSQHLA-VGSDQGYVYLLDT--EGPTVLYQ--KHIASDISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~la-sGs~dG~V~vwD~--~~~~~l~~--~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
.....-.....++|+|+++.|. +.+.++.|.+||+ .++.+... +.........+..+++.+ ++.+.++
T Consensus 143 -~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~------~G~lwva 215 (297)
T 3g4e_A 143 -KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA------EGKLWVA 215 (297)
T ss_dssp -EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT------TSCEEEE
T ss_pred -EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC------CCCEEEE
Confidence 1111123467899999998664 5556789999997 45543211 111112234567788877 5765555
Q ss_pred EECCCcEEEEECCCCceEEeeec
Q 003360 415 ATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 415 gs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
....+.|..||..+|+++..+..
T Consensus 216 ~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 216 CYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EETTTEEEEECTTTCCEEEEEEC
T ss_pred EcCCCEEEEEcCCCceEEEEEEC
Confidence 56677899999999999887643
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.43 E-value=5.6e-05 Score=90.78 Aligned_cols=188 Identities=12% Similarity=0.050 Sum_probs=111.7
Q ss_pred eeCCCeEEEec-CC---cEEEeccC-----CCceeec------ccccCCccee--eCCCCCEEEEEECC-C----cEEEE
Q 003360 201 ITGNSFILSSA-DE---DYSLLAKS-----VPPLLDF------ETKLKDGSQS--HSKVKNLFITGHSD-G----AINFW 258 (826)
Q Consensus 201 s~~~~~l~~~~-d~---~i~~w~~~-----~~~~~~~------~~~h~g~V~~--~s~~~~~l~Tgs~D-G----tVriW 258 (826)
+|+|++++... ++ ...+|... .+....+ ..+|...+.+ |+|||++|+.+..+ | .|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 48888877654 32 35666322 2121211 1123223444 99999999887654 3 59999
Q ss_pred eCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc--------------EEEEEeCCCCCccccceE
Q 003360 259 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM--------------VRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 259 D~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~--------------V~iwd~~~~~~~~~~~~~ 324 (826)
|+.+..... .. .+...+..++|+|| +.|+.++.++. |.+|++.++....
T Consensus 195 dl~tg~~~~---~~--------~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~----- 257 (741)
T 1yr2_A 195 GVADGKPLA---DE--------LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD----- 257 (741)
T ss_dssp ETTTCCEEE---EE--------EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC-----
T ss_pred ECCCCCCCC---cc--------CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC-----
Confidence 996555311 10 11112357899999 99988887664 7778876432210
Q ss_pred EEeecCCCCeEEEEEEEEee--ccCCeEEEEEccCCCEEEEEecCC-----eEEEEecCCC--eeEEeeecccCCCCCee
Q 003360 325 SFTGSKKGNSHIIHSVKVMK--INGSIISLNMNRNSQHLAVGSDQG-----YVYLLDTEGP--TVLYQKHIASDISSGIV 395 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~--~~~~V~~l~~s~~g~~lasGs~dG-----~V~vwD~~~~--~~l~~~~~~~~~~~~V~ 395 (826)
. +.+.. +...+..+.|||||++|++.+.++ .|++||+.++ .+..... .+...+.
T Consensus 258 ---------~-----lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~ 320 (741)
T 1yr2_A 258 ---------Q-----PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---PDLKAQW 320 (741)
T ss_dssp ---------E-----EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---CSSSSCE
T ss_pred ---------E-----EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---CCCCceE
Confidence 1 11111 122488999999999999888654 8999999877 3121121 2223333
Q ss_pred EEEEeecccCCCCCcEEEEEECC----CcEEEEECCCC
Q 003360 396 SLQFETCSLQGFEKNFLVIATKD----SSVLVLDSDNG 429 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~D----g~V~iwd~~tg 429 (826)
...+ + ++..|+..+.+ +.|.+||..++
T Consensus 321 ~~~~-~------dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 321 DFVD-G------VGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEEE-E------ETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEEe-c------cCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 3333 4 47778877764 45999999875
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.43 E-value=0.00024 Score=77.78 Aligned_cols=212 Identities=7% Similarity=-0.088 Sum_probs=125.2
Q ss_pred EEEEeeCCCeEEEec-----------CCcEEEeccCCCceee-cccc---c--CCcce-e--eCCCCCEEEEEEC--CCc
Q 003360 197 AMKLITGNSFILSSA-----------DEDYSLLAKSVPPLLD-FETK---L--KDGSQ-S--HSKVKNLFITGHS--DGA 254 (826)
Q Consensus 197 ~~~fs~~~~~l~~~~-----------d~~i~~w~~~~~~~~~-~~~~---h--~g~V~-~--~s~~~~~l~Tgs~--DGt 254 (826)
.+.++||++.++.+. ++.|.+|+........ ...+ . .+.-+ . ++|+|++|+++.. +++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 789999999999874 4568888664322221 1111 0 01111 2 9999999998874 578
Q ss_pred EEEEeCCCCceeeeee-cccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeCCCCCccc----------cc
Q 003360 255 INFWDVSCPLFLLILS-LKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIE----------NS 322 (826)
Q Consensus 255 VriWD~s~~~~~~i~~-l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~~~~~~~~----------~~ 322 (826)
|.++| ..... +.. +. .. .++.+.|++ +.+++.+.||.+.+|+. .+..... ..
T Consensus 150 v~viD-~t~~~--~~~~i~--------~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p 213 (373)
T 2mad_H 150 VGLVV-QGGSS--DDQLLS--------SP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQN 213 (373)
T ss_pred EEEEE-CCCCE--EeEEcC--------CC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcc
Confidence 99999 76653 222 22 10 123444544 44555667777777777 4322100 00
Q ss_pred e-EEEeecCCC----------CeEEEEE-------EEEe-----------eccCCeEEEEEccCCCEEEEEec-------
Q 003360 323 F-LSFTGSKKG----------NSHIIHS-------VKVM-----------KINGSIISLNMNRNSQHLAVGSD------- 366 (826)
Q Consensus 323 ~-~~i~~s~~~----------~~~~~~~-------~~~~-----------~~~~~V~~l~~s~~g~~lasGs~------- 366 (826)
+ ....+.+++ ....+.- +... ........+.+++++.++.++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~ 293 (373)
T 2mad_H 214 LLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL 293 (373)
T ss_pred eeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence 0 000001111 0000000 0000 01222445788999988887654
Q ss_pred ---CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc-EEEEEE-CCCcEEEEECCCCceEEe
Q 003360 367 ---QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-FLVIAT-KDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 367 ---dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~l~sgs-~Dg~V~iwd~~tg~~i~~ 434 (826)
++.|.++|+.+.+++.+... .....++.|++ |+. .++++. .++.|.+||..+++.+.+
T Consensus 294 ~~~~~~V~VID~~t~~vv~~i~~----g~~p~~i~~s~------Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 294 HAAAKEVTSVTGLVGQTSSQISL----GHDVDAISVAQ------DGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cCCCCeEEEEECCCCEEEEEEEC----CCCcCeEEECC------CCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 35799999999998855542 22578899999 687 777777 489999999999998877
No 210
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.42 E-value=7.2e-05 Score=81.57 Aligned_cols=214 Identities=12% Similarity=0.097 Sum_probs=128.4
Q ss_pred EEEEEEeeCCCeEEEec---CCcEEEeccCCCceeecccccCCccee-eCCCCCEEEEEECCCcEEEEeCCC-Cceeeee
Q 003360 195 ITAMKLITGNSFILSSA---DEDYSLLAKSVPPLLDFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDVSC-PLFLLIL 269 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~ 269 (826)
-..+.|+|||++++.+. ++.|.+++......... .+..+ ... +....+.+++.+.||++-+.+... .....
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~t-I~v~g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-- 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM-LDVPD-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-- 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE-EECCS-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE--
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEE-EECCC-cceeecCCCceeEEECCCCCEEEEECCCCCeEEE--
Confidence 34578999999988864 46788887765443322 22122 112 333456777888999999999832 33211
Q ss_pred ecccccccccccCCCCeE-EEEEe-CCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC
Q 003360 270 SLKQQSEKDFSLSGIPLT-ALYYD-GTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING 347 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~-~l~fs-p~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~ 347 (826)
... ..+.....++. ...|. ++++++. .+.+|+|.++|+..+.......+. + +.... +......+
T Consensus 215 ~~~----~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~-~-~~~~~-------~~~g~~p~ 280 (386)
T 3sjl_D 215 THT----EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVE-A-LTEAE-------RADGWRPG 280 (386)
T ss_dssp EEC----CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEE-S-SCHHH-------HHTTEEEC
T ss_pred eec----ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeeccee-c-ccccc-------ccccccCC
Confidence 000 01111112222 23665 5665555 556899999998744321000000 0 00000 00001123
Q ss_pred CeEEEEEccCCCEEEEEec----------CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc-EEEEEE
Q 003360 348 SIISLNMNRNSQHLAVGSD----------QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-FLVIAT 416 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~----------dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~l~sgs 416 (826)
....++++++++++.+... ...|.++|+.+++++.+.... ..+.++.|++ |+. .|++..
T Consensus 281 g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~------D~~~~ly~tn 350 (386)
T 3sjl_D 281 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQ------DEKPLLYALS 350 (386)
T ss_dssp SSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECS------SSSCEEEEEE
T ss_pred CcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECC------CCCeEEEEEc
Confidence 3445777999998888753 257999999999999665542 2677899998 565 677755
Q ss_pred -CCCcEEEEECCCCceEEeee
Q 003360 417 -KDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 417 -~Dg~V~iwd~~tg~~i~~~~ 436 (826)
.++.|.++|..+++.+.++.
T Consensus 351 ~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 351 TGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp TTTTEEEEEETTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCcEEEEec
Confidence 48999999999999998864
No 211
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.36 E-value=0.00011 Score=80.20 Aligned_cols=156 Identities=9% Similarity=0.006 Sum_probs=100.9
Q ss_pred eCCCCCEEEEEEC-----CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe----------C
Q 003360 239 HSKVKNLFITGHS-----DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD----------Q 303 (826)
Q Consensus 239 ~s~~~~~l~Tgs~-----DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs----------~ 303 (826)
..|+++.+.+... +++|.+.|...... +..+. ....+ . ++++|++++|++++ .
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v--~~~I~--------vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV--IGMID--------GGFLP-N-PVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEE--EEEEE--------ECSSC-E-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeE--EEEEE--------CCCCC-c-EEECCCCCEEEEEcccccccccCCC
Confidence 5678887666654 68999999954442 22232 11233 4 99999999888876 3
Q ss_pred CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec--CCeEEEEecCCCeeE
Q 003360 304 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD--QGYVYLLDTEGPTVL 381 (826)
Q Consensus 304 dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~--dG~V~vwD~~~~~~l 381 (826)
++.|.+||..+.... ..+...... . .........++|+|||+++.+++. ++.|.|+|+.+++++
T Consensus 108 ~~~VsviD~~t~~v~-----~~I~v~~g~-r--------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPT-----ADIELPDAP-R--------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEEEECTTTCCEE-----EEEEETTCC-C--------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCeEE-----EEEECCCcc-c--------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 678999999854321 001000000 0 000113556899999999988874 689999999999998
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC-CceE
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN-GNML 432 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t-g~~i 432 (826)
.+..... . ...+ |. ....+++.+.||++.++++.+ ++.+
T Consensus 174 ~tI~v~g----~--~~~~-P~-----g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 174 RMLDVPD----C--YHIF-PT-----APDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp EEEECCS----E--EEEE-EE-----ETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred EEEECCC----c--ceee-cC-----CCceeEEECCCCCEEEEECCCCCeEE
Confidence 6664321 1 1223 32 256677889999999999986 6653
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.33 E-value=0.0003 Score=75.22 Aligned_cols=214 Identities=11% Similarity=0.039 Sum_probs=124.8
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCcee
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLL 226 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~ 226 (826)
.+++....+.|+.||...- ..... . +...+.++.+.++++.+++..++ +.+|+.....+.
T Consensus 63 l~~~d~~~~~i~~~d~~~~----------------~~~~~--~-~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~~~ 122 (326)
T 2ghs_A 63 AWWFNILERELHELHLASG----------------RKTVH--A-LPFMGSALAKISDSKQLIASDDG-LFLRDTATGVLT 122 (326)
T ss_dssp EEEEEGGGTEEEEEETTTT----------------EEEEE--E-CSSCEEEEEEEETTEEEEEETTE-EEEEETTTCCEE
T ss_pred EEEEECCCCEEEEEECCCC----------------cEEEE--E-CCCcceEEEEeCCCeEEEEECCC-EEEEECCCCcEE
Confidence 3445556788988886541 00111 1 23578999999999877665444 666764433333
Q ss_pred eccc---cc-CCccee--eCCCCCEEEEEECC------CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC
Q 003360 227 DFET---KL-KDGSQS--HSKVKNLFITGHSD------GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT 294 (826)
Q Consensus 227 ~~~~---~h-~g~V~~--~s~~~~~l~Tgs~D------GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~ 294 (826)
.+.. .+ ...+.+ ++++|+++++...+ +.|..+| . ..... +. .+......++|+|+
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~-g~~~~---~~--------~~~~~~~~i~~s~d 189 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K-GKVTK---LF--------ADISIPNSICFSPD 189 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T-TEEEE---EE--------EEESSEEEEEECTT
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C-CcEEE---ee--------CCCcccCCeEEcCC
Confidence 2211 11 123444 89999987765432 3444455 3 22211 11 11135678999999
Q ss_pred CCEEEEE-eCCCcEEEEEeC--CC-CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeE
Q 003360 295 SRVLVSG-DQSGMVRIFKLK--YE-PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYV 370 (826)
Q Consensus 295 ~~~Lasg-s~dg~V~iwd~~--~~-~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V 370 (826)
++.|+++ +.++.|.+|++. ++ .... .... .......+.+..++++++|.+.++...++.|
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-------------~~~~---~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v 253 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGK-------------AEVF---IDSTGIKGGMDGSVCDAEGHIWNARWGEGAV 253 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSC-------------CEEE---EECTTSSSEEEEEEECTTSCEEEEEETTTEE
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccC-------------ceEE---EECCCCCCCCCeeEECCCCCEEEEEeCCCEE
Confidence 9877655 456889999985 32 1110 0000 0111112346789999999877776677899
Q ss_pred EEEecCCCeeEEeeecccCCCCCeeEEEEe-ecccCCCCCcEEEEEECCC
Q 003360 371 YLLDTEGPTVLYQKHIASDISSGIVSLQFE-TCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 371 ~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~-~~~~~~~d~~~l~sgs~Dg 419 (826)
.+||. +++.+.... .....+++++|. + ++..|++++..+
T Consensus 254 ~~~d~-~g~~~~~i~---~~~~~~~~~af~g~------d~~~L~vt~~~~ 293 (326)
T 2ghs_A 254 DRYDT-DGNHIARYE---VPGKQTTCPAFIGP------DASRLLVTSARE 293 (326)
T ss_dssp EEECT-TCCEEEEEE---CSCSBEEEEEEEST------TSCEEEEEEBCT
T ss_pred EEECC-CCCEEEEEE---CCCCCcEEEEEecC------CCCEEEEEecCC
Confidence 99998 566554333 233468999998 5 567777666543
No 213
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.30 E-value=0.00067 Score=74.14 Aligned_cols=154 Identities=8% Similarity=-0.050 Sum_probs=94.3
Q ss_pred CCCCEEEEEEC--CC---cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe----------CCC
Q 003360 241 KVKNLFITGHS--DG---AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD----------QSG 305 (826)
Q Consensus 241 ~~~~~l~Tgs~--DG---tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs----------~dg 305 (826)
++++++.+... .. +|.+||...... +..+. ....+ .++|+||++.|+++. .++
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~--~~~i~--------~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSI--LGHVN--------GGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeE--EEEec--------CCCCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence 45554444432 22 889999944432 22232 11123 899999999999986 367
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec--CCeEEEEecCCCeeEEe
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD--QGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~--dG~V~vwD~~~~~~l~~ 383 (826)
.|.+||..+.... ..+....... . ........++|+|+|++|++++. ++.|.++| .+++++..
T Consensus 98 ~v~viD~~t~~~~-----~~i~~~~~~~------~---~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 98 YVEVFDPVTFLPI-----ADIELPDAPR------F---DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred eEEEEECCCCcEE-----EEEECCCccc------c---ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 8999998743221 0000000000 0 00122457899999999999874 57899999 99988744
Q ss_pred -eecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 384 -KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 384 -~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
.... . ++.+.+. ....+++.+.||.+.+||. +++.+..
T Consensus 163 ~i~~~----~---~~~~~~~-----~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 163 LLSSP----T---CYHIHPG-----APSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred EcCCC----c---eEEEEeC-----CCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 3321 1 2334442 2345667778999999999 8887743
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.27 E-value=0.00014 Score=76.88 Aligned_cols=211 Identities=8% Similarity=-0.005 Sum_probs=125.9
Q ss_pred EEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCcee
Q 003360 148 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLL 226 (826)
Q Consensus 148 liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~ 226 (826)
+++....+.|+.|+... . ...+..+...+..+++.++++.+++.. ++.|..|+... ...
T Consensus 60 ~~~d~~~~~i~~~~~~g-----------------~--~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g-~~~ 119 (305)
T 3dr2_A 60 VWSDLVGRRVLGWREDG-----------------T--VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG-QAH 119 (305)
T ss_dssp EEEETTTTEEEEEETTS-----------------C--EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE
T ss_pred EEEECCCCEEEEEeCCC-----------------C--EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCC-CEE
Confidence 34455667888876532 0 111233455688999999999666554 56787886542 232
Q ss_pred eccccc----CCccee--eCCCCCEEEE----EEC-------------CCcEEEEeCCCCceeeeeecccccccccccCC
Q 003360 227 DFETKL----KDGSQS--HSKVKNLFIT----GHS-------------DGAINFWDVSCPLFLLILSLKQQSEKDFSLSG 283 (826)
Q Consensus 227 ~~~~~h----~g~V~~--~s~~~~~l~T----gs~-------------DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~ 283 (826)
.+.... ...+.. ++++|++++| |.. .+.|..||........+. ..
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------------~~ 187 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------------DL 187 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------------EE
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe------------cC
Confidence 221111 112333 8899999987 432 245777777333321111 11
Q ss_pred CCeEEEEEeCCCCEEEEEeCC------CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC
Q 003360 284 IPLTALYYDGTSRVLVSGDQS------GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN 357 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~d------g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 357 (826)
.....++|+|+++.|+++... +.|.+|++..+. +. ... .......+....++++++
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~------l~---------~~~---~~~~~~~~~pdgi~~d~~ 249 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA------LH---------DRR---HFASVPDGLPDGFCVDRG 249 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE------EE---------EEE---EEECCSSSCCCSEEECTT
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC------cc---------CCe---EEEECCCCCCCeEEECCC
Confidence 256789999999988887665 689999886321 00 000 111112334567899999
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
|. |.++..+| |.+||. .++.+...... ..+.+++|.+ ++..|++++.++..
T Consensus 250 G~-lwv~~~~g-v~~~~~-~g~~~~~~~~~----~~~~~~~f~~------d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 250 GW-LWSSSGTG-VCVFDS-DGQLLGHIPTP----GTASNCTFDQ------AQQRLFITGGPCLW 300 (305)
T ss_dssp SC-EEECCSSE-EEEECT-TSCEEEEEECS----SCCCEEEECT------TSCEEEEEETTEEE
T ss_pred CC-EEEecCCc-EEEECC-CCCEEEEEECC----CceeEEEEeC------CCCEEEEEcCCeEE
Confidence 98 55555555 899998 45555434321 2478899986 58889988876533
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.26 E-value=0.0004 Score=76.96 Aligned_cols=208 Identities=14% Similarity=0.102 Sum_probs=126.2
Q ss_pred CEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeCCCCCEEEEEECCC--cEEEEeCCCCce-eeee
Q 003360 194 SITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDG--AINFWDVSCPLF-LLIL 269 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l~Tgs~DG--tVriWD~s~~~~-~~i~ 269 (826)
....+++.+++..+++.. ++.|+.|+.....+..+......+..+++++++.|+++..++ .|.+||...... ..+-
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g 211 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG 211 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCceeEEee
Confidence 567889999998777666 688999976654444331111112233899999888888766 788888743321 1110
Q ss_pred ecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC--
Q 003360 270 SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING-- 347 (826)
Q Consensus 270 ~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~-- 347 (826)
.+. ......+.+++++|++..|+++..++.|..||...... ..+.... .....+
T Consensus 212 ~~~-------~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~------~~~~~~~-----------~~g~~~~~ 267 (409)
T 3hrp_A 212 QLG-------STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV------TLIKQLE-----------LSGSLGTN 267 (409)
T ss_dssp ECC-------TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE------EEEEECC-----------CCSCCCCS
T ss_pred ecc-------chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE------EEEeccc-----------ccCCCCCC
Confidence 011 01235678899999666666677888999999874321 0000000 000111
Q ss_pred CeEEEEEccC-CCEEEEEecCCeEEEEecCCCeeEEeeec-ccC---------CCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 348 SIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVLYQKHI-ASD---------ISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 348 ~V~~l~~s~~-g~~lasGs~dG~V~vwD~~~~~~l~~~~~-~~~---------~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
|...++|+|+ +.++++-..++.|+.||.......+.-.. ..+ .-.....++|++ ++.++++-+
T Consensus 268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~------dG~lyvad~ 341 (409)
T 3hrp_A 268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE------DGNFYIVDG 341 (409)
T ss_dssp SCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT------TCCEEEEET
T ss_pred ccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC------CCCEEEEeC
Confidence 1238999995 55555666788999999865422211110 000 013467888888 577666666
Q ss_pred -CCCcEEEEECCCCce
Q 003360 417 -KDSSVLVLDSDNGNM 431 (826)
Q Consensus 417 -~Dg~V~iwd~~tg~~ 431 (826)
.++.|+.|+..+|..
T Consensus 342 ~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 342 FKGYCLRKLDILDGYV 357 (409)
T ss_dssp TTTCEEEEEETTTTEE
T ss_pred CCCCEEEEEECCCCEE
Confidence 788999999777764
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.25 E-value=0.00022 Score=79.07 Aligned_cols=247 Identities=11% Similarity=0.039 Sum_probs=137.4
Q ss_pred ccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-----------CCcEEEeccCCC
Q 003360 155 GHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-----------DEDYSLLAKSVP 223 (826)
Q Consensus 155 G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-----------d~~i~~w~~~~~ 223 (826)
+.+.++|..+.+ ..-.++.-..+ .+.++|+++.++.+. ++.|.+++....
T Consensus 99 ~~VsVID~~t~~-----------------vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 99 TQQFVIDGSTGR-----------------ILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp EEEEEEETTTTE-----------------EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CeEEEEECCCCE-----------------EEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 689999987721 22223333334 789999999988864 456888876543
Q ss_pred ceee-cccc-c----CCc-cee--eCCCCCEEEEEEC--CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEe
Q 003360 224 PLLD-FETK-L----KDG-SQS--HSKVKNLFITGHS--DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYD 292 (826)
Q Consensus 224 ~~~~-~~~~-h----~g~-V~~--~s~~~~~l~Tgs~--DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fs 292 (826)
.... +..+ . .+. -.. ++|+|+++.++.. +++|.+.|+..... +..+.......+... ..-..+.++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv--v~~I~v~g~~~~~p~-g~~~~v~~~ 236 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF--DRMLDVPDCYHIFPA-SPTVFYMNC 236 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE--EEEEECCSEEEEEEE-ETTEEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE--EEEEEcCCceeeccC-CCcEEEEEc
Confidence 3322 2111 0 011 112 9999999888874 58999999955442 222321000000000 011234566
Q ss_pred CCCCEEEEEeCCCcEE-----EEEeCCCCCcc-------ccceEEEeecCCCCeEEEEE----EEEe-------------
Q 003360 293 GTSRVLVSGDQSGMVR-----IFKLKYEPHAI-------ENSFLSFTGSKKGNSHIIHS----VKVM------------- 343 (826)
Q Consensus 293 p~~~~Lasgs~dg~V~-----iwd~~~~~~~~-------~~~~~~i~~s~~~~~~~~~~----~~~~------------- 343 (826)
++++++++...++.+. +|++....... ...+..... .+....+.. +...
T Consensus 237 ~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~--~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 237 RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY--TGKIFQADLTAEGATFRAPIEALTEAERAD 314 (426)
T ss_dssp TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT--TSEEEEEEECSSCEEECCCEESSCTTTGGG
T ss_pred CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC--CCcEEEEeccCCceEEeeeeeecccccccc
Confidence 6666665555555443 22222111000 000111110 110100000 0000
Q ss_pred -eccCCeEEEEEccCCCEEEEEec----------CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc-E
Q 003360 344 -KINGSIISLNMNRNSQHLAVGSD----------QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-F 411 (826)
Q Consensus 344 -~~~~~V~~l~~s~~g~~lasGs~----------dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~ 411 (826)
........+++++++.++.+... ++.|.|+|+.+.+++.+.... .....+.|++ |+. .
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg----~~P~gia~sp------Dg~~~ 384 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG----HEIDSINVSQ------DAEPL 384 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECC------SSSCE
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC----CCcCeEEEcc------CCCEE
Confidence 00111223689999988877653 357999999999999665432 2477899998 687 8
Q ss_pred EEEEE-CCCcEEEEECCCCceEEee
Q 003360 412 LVIAT-KDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 412 l~sgs-~Dg~V~iwd~~tg~~i~~~ 435 (826)
+++.. .++.|.++|..+++.+.++
T Consensus 385 lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 385 LYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCCeEEEEECCCCCEEEEe
Confidence 88888 5899999999999999885
No 217
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.19 E-value=0.0032 Score=68.27 Aligned_cols=197 Identities=14% Similarity=0.159 Sum_probs=106.3
Q ss_pred CCCeEEEec-CCcEEEeccCCCcee-ecccccCCccee-eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccc
Q 003360 203 GNSFILSSA-DEDYSLLAKSVPPLL-DFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKD 278 (826)
Q Consensus 203 ~~~~l~~~~-d~~i~~w~~~~~~~~-~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~ 278 (826)
++..++.+. ++.+..++....... .. ...+.+.+ ....+..++.++.+|.|..+|. ++..+ ...... ...
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~--~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~---W~~~~~-~~~ 175 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQT--KVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVK---WTVNLD-MPS 175 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEE--ECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEE---EEEECC-C--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEE--eCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEE---EEEeCC-CCc
Confidence 445555555 888888876543322 22 11222222 1112457888899999999999 44442 222211 000
Q ss_pred cccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeec-CCCCeEEEEEEEEeeccCCeEEEEEccC
Q 003360 279 FSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS-KKGNSHIIHSVKVMKINGSIISLNMNRN 357 (826)
Q Consensus 279 ~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s-~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 357 (826)
..... ....... +..++++..+|.|..+|..++... +..... +.+.. .+..+. .....++ . .
T Consensus 176 ~~~~~--~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~-----w~~~~~~~~~~~-~~~~~~-~~~~~p~----~--~ 238 (376)
T 3q7m_A 176 LSLRG--ESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMI-----WQQRISQATGST-EIDRLS-DVDTTPV----V--V 238 (376)
T ss_dssp ---CC--CCCCEEE--TTEEEECCTTTEEEEEETTTCCEE-----EEEECCC-------------CCCCCCE----E--E
T ss_pred eeecC--CCCcEEE--CCEEEEEcCCCEEEEEECCCCcEE-----EEEecccCCCCc-cccccc-ccCCCcE----E--E
Confidence 00000 0111122 456788888999999998755331 110000 00000 000000 0001111 1 2
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+..+.+++.+|.|..+|..+++.++..... ....+.. ++..+++++.++.|..+|..+|+.+-..
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-----~~~~~~~--------~~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKRELG-----SVNDFIV--------DGNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECCC-----CEEEEEE--------ETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccCC-----CCCCceE--------ECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 457888889999999999999988655421 2222222 2678899999999999999999987654
No 218
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.16 E-value=0.00086 Score=79.38 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=34.4
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS 388 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~ 388 (826)
..++....+...+.++++|+.||.+++||.+++++++++....
T Consensus 476 ~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 476 VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 3344555566778899999999999999999999998887543
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.16 E-value=0.0051 Score=67.68 Aligned_cols=200 Identities=10% Similarity=0.048 Sum_probs=114.7
Q ss_pred EEEEEEeeCCCeEEEec-C------CcEEEeccCCCceeecccccCC---cce-e--eCCCCCEEEEEE-----------
Q 003360 195 ITAMKLITGNSFILSSA-D------EDYSLLAKSVPPLLDFETKLKD---GSQ-S--HSKVKNLFITGH----------- 250 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~-d------~~i~~w~~~~~~~~~~~~~h~g---~V~-~--~s~~~~~l~Tgs----------- 250 (826)
-..+.+.|++ .++++. + +.+.+++..+..+... |...+ ++. . |+|+++.++|..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~-~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGK-WEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEE-CCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEE-EccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence 3456778898 555544 4 5688887665444433 43221 111 1 699999988874
Q ss_pred --------CCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEE--eCCCCEEEEEe------CCCcEEEEEeCC
Q 003360 251 --------SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY--DGTSRVLVSGD------QSGMVRIFKLKY 314 (826)
Q Consensus 251 --------~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f--sp~~~~Lasgs------~dg~V~iwd~~~ 314 (826)
.+.+|.+||+..... +..+.-. ..+.....|.| +|+++++.+++ .+++|.+|....
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k~--~~tI~vg------~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRKR--IHSLTLG------EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTEE--EEEEESC------TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred chhhhhhccCCEEEEEECCCCcE--eeEEecC------CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 378999999965542 2233310 01123455656 99999888877 467898888763
Q ss_pred CCCccccceEEEeecCCCCeEEEEEEEEee-----ccCCeEEEEEccCCCEEEEEec-CCeEEEEecCC---CeeEEeee
Q 003360 315 EPHAIENSFLSFTGSKKGNSHIIHSVKVMK-----INGSIISLNMNRNSQHLAVGSD-QGYVYLLDTEG---PTVLYQKH 385 (826)
Q Consensus 315 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-----~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~~---~~~l~~~~ 385 (826)
+.... ...+.......... +.... ....+..|.+|+||++|.++.. .+.|+++|+.. .+++....
T Consensus 290 g~~~~---~~vIdi~~~~v~~~---lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~ 363 (462)
T 2ece_A 290 GKWNA---EKVIEIPAEPLEGN---LPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVK 363 (462)
T ss_dssp TEEEE---EEEEEECCEECCSS---CCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred CceeE---EEEEeCCCcccccc---ccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEE
Confidence 21110 00000000000000 00000 0245788999999999988775 68999999863 34443333
Q ss_pred cccC-----------CCCCeeEEEEeecccCCCCCcEEEEEE
Q 003360 386 IASD-----------ISSGIVSLQFETCSLQGFEKNFLVIAT 416 (826)
Q Consensus 386 ~~~~-----------~~~~V~sl~f~~~~~~~~d~~~l~sgs 416 (826)
+... .......+++++ |+.+|+++.
T Consensus 364 tGG~~~~~~~~~G~~~~ggPr~~~lSp------DGk~LyVaN 399 (462)
T 2ece_A 364 LGGIFHRADHPAGHKLTGAPQMLEISR------DGRRVYVTN 399 (462)
T ss_dssp CBTTTTCBCCTTSCCCCSCCCCEEECT------TSSEEEEEC
T ss_pred eCCeeccccccccccCCCCCCEEEEcC------CCCEEEEEc
Confidence 2100 011356688888 699999887
No 220
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.13 E-value=0.00057 Score=80.91 Aligned_cols=80 Identities=10% Similarity=0.204 Sum_probs=52.6
Q ss_pred EEEEEeCCCCEEEEEeCCC-------------------cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec--
Q 003360 287 TALYYDGTSRVLVSGDQSG-------------------MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-- 345 (826)
Q Consensus 287 ~~l~fsp~~~~Lasgs~dg-------------------~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-- 345 (826)
..++++|++..++++..++ .|..+|..+++.. +. .+...+
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~-----W~--------------~~~~~~d~ 306 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK-----WH--------------YQETPGDN 306 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE-----EE--------------EESSTTCC
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE-----EE--------------EecCCCcc
Confidence 4678999999999988775 3666666644321 10 111111
Q ss_pred -----cCCeEEEEEccCC---CEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 346 -----NGSIISLNMNRNS---QHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 346 -----~~~V~~l~~s~~g---~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
......+....+| ..|++++.+|.|+++|..+++++....
T Consensus 307 wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 307 WDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp SCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred cccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 1122233444577 679999999999999999999986654
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.13 E-value=0.00083 Score=74.37 Aligned_cols=206 Identities=13% Similarity=0.034 Sum_probs=114.4
Q ss_pred EEEeeCCCeEEEec-CC--cEEEeccCCCceeec----ccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceee
Q 003360 198 MKLITGNSFILSSA-DE--DYSLLAKSVPPLLDF----ETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 198 ~~fs~~~~~l~~~~-d~--~i~~w~~~~~~~~~~----~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
++|+++++.++.+. ++ .+..|+......... .........+ ++| ++.+++ +..++.|+.||........
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~ 254 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTL 254 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEE
Confidence 88999999888876 44 566665443222111 0112233444 888 555555 6678999999995554322
Q ss_pred eeecccccccccccCCC--CeEEEEEeCC-CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecC--CCCeEEEEEEEE
Q 003360 268 ILSLKQQSEKDFSLSGI--PLTALYYDGT-SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSK--KGNSHIIHSVKV 342 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~--~V~~l~fsp~-~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~--~~~~~~~~~~~~ 342 (826)
+..... ..+.. +...++|+|+ +.++++-..++.|+.|+.... +..+.... .+... +...
T Consensus 255 ~~~~~~------~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-------~~~~~g~~~~~g~~d---g~~~ 318 (409)
T 3hrp_A 255 IKQLEL------SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-------CEWFCGSATQKTVQD---GLRE 318 (409)
T ss_dssp EEECCC------CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-------EEEEEECTTCCSCBC---EEGG
T ss_pred Eecccc------cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-------EEEEEeCCCCCCcCC---Cccc
Confidence 211110 01111 1239999995 555555566788888876522 11111111 01000 0000
Q ss_pred eeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecc--cC---------CCCCeeEEEEeecccCCCCCc
Q 003360 343 MKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIA--SD---------ISSGIVSLQFETCSLQGFEKN 410 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~--~~---------~~~~V~sl~f~~~~~~~~d~~ 410 (826)
...-.....|+++++|.++++-+ .++.|+.||+.++.+....... .+ .-.....+++.+ ++.
T Consensus 319 ~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~------~g~ 392 (409)
T 3hrp_A 319 EALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG------EGG 392 (409)
T ss_dssp GCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS------SSE
T ss_pred ccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC------CCC
Confidence 00012478999999999777777 7899999998777754222110 00 013466777777 455
Q ss_pred EEEEEECCCcEEEEEC
Q 003360 411 FLVIATKDSSVLVLDS 426 (826)
Q Consensus 411 ~l~sgs~Dg~V~iwd~ 426 (826)
++++-..+++|+.+++
T Consensus 393 lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 393 YWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEESTTCEEEEEEE
T ss_pred EEEEECCCCeEEEEEe
Confidence 5555566667766654
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.11 E-value=1.4e-06 Score=95.46 Aligned_cols=185 Identities=13% Similarity=0.181 Sum_probs=98.6
Q ss_pred CCCeEEEec-CCcEEEeccCCCce-eecccccCCccee--eCCCCCEEEEEECCCcEEEEeC-CCCceeeeeeccccccc
Q 003360 203 GNSFILSSA-DEDYSLLAKSVPPL-LDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEK 277 (826)
Q Consensus 203 ~~~~l~~~~-d~~i~~w~~~~~~~-~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~ 277 (826)
++..+++++ |+.+..|+...... ..+. . +.+.+ +..++.++++++.||.|+.||+ ++..+ .........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~--~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~---w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK--E-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL---TKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEE--C-CCSCCCC-----CCEEECTTTCCEEEC-----CCS---EECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEec--C-CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee---eeeeccCcc
Confidence 456677766 89999998654333 3331 1 44544 6677788888899999999999 55442 122211000
Q ss_pred ccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC
Q 003360 278 DFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN 357 (826)
Q Consensus 278 ~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 357 (826)
. ....++. ..+..+++|+.||.|+.||..+++... .. .... ...++|+
T Consensus 82 ~--~~~sp~~-----~~~~~v~~g~~dg~v~a~D~~tG~~~w---------------------~~-~~~~---~~~~~p~ 129 (369)
T 2hz6_A 82 L--VQASPCR-----SSDGILYMGKKQDIWYVIDLLTGEKQQ---------------------TL-SSAF---ADSLSPS 129 (369)
T ss_dssp H--HTTCSCC----------CCCCEEEEEEEEECCC--------------------------------------------
T ss_pred c--cccCceE-----ecCCEEEEEeCCCEEEEEECCCCcEEE---------------------Ee-cCCC---ccccccc
Confidence 0 0111111 134567888899999999998654311 00 0011 1344567
Q ss_pred CCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCC---CcEEEEEECCCcEEEEECCCCceEEe
Q 003360 358 SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFE---KNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 358 g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d---~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
+..|++|+.||.|+.||.+++++++..... . +....... + ...+++++.||.|+.||..+|+.+-.
T Consensus 130 ~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~---------~~~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 130 TSLLYLGRTEYTITMYDTKTRELRWNATYF-D---------YAASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp ---EEEEEEEEEEECCCSSSSSCCCEEEEE-E---------ECCBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred CCEEEEEecCCEEEEEECCCCCEEEeEecc-c---------ccCccccC-CccccceEEEECCCCEEEEEECCCCcEEEE
Confidence 888999999999999999999887554321 1 11111110 1 25678899999999999999998876
Q ss_pred ee
Q 003360 435 NL 436 (826)
Q Consensus 435 ~~ 436 (826)
+.
T Consensus 199 ~~ 200 (369)
T 2hz6_A 199 QN 200 (369)
T ss_dssp EE
T ss_pred ec
Confidence 53
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.09 E-value=0.0009 Score=71.48 Aligned_cols=203 Identities=10% Similarity=0.009 Sum_probs=117.6
Q ss_pred EEEEEEeeCCCe-EEEec-CCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeee
Q 003360 195 ITAMKLITGNSF-ILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILS 270 (826)
Q Consensus 195 Vt~~~fs~~~~~-l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~ 270 (826)
.....|++++.. +++.. ++.|..|+........+ .+...+.+ ++++++++++. .+ .|.+||........+..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~--~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH--ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE--ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE--ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 356678887554 44554 67788886554333322 23345666 78898877754 44 49999985444322211
Q ss_pred cccccccccccCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS----GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN 346 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d----g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~ 346 (826)
... ......+..++++|+++++++...+ +...||.+..+. . .......
T Consensus 127 ~~~------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-----------------~-----~~~~~~~ 178 (326)
T 2ghs_A 127 LES------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-----------------V-----TKLFADI 178 (326)
T ss_dssp SST------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-----------------E-----EEEEEEE
T ss_pred CCC------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-----------------E-----EEeeCCC
Confidence 110 0112468899999999977655321 234555554111 0 0011112
Q ss_pred CCeEEEEEccCCCEEEEE-ecCCeEEEEecC--CC-eeE--EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 347 GSIISLNMNRNSQHLAVG-SDQGYVYLLDTE--GP-TVL--YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasG-s~dG~V~vwD~~--~~-~~l--~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
.....++|+++|+.++++ +.++.|.+||+. ++ .+. ..+.........+..+.+.+ ++.+.++...++.
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~------~G~lwva~~~~~~ 252 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA------EGHIWNARWGEGA 252 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT------TSCEEEEEETTTE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC------CCCEEEEEeCCCE
Confidence 346789999999876554 457899999986 55 321 00111112233456677766 4665555445688
Q ss_pred EEEEECCCCceEEeee
Q 003360 421 VLVLDSDNGNMLSTNL 436 (826)
Q Consensus 421 V~iwd~~tg~~i~~~~ 436 (826)
|.+||. +|+.+..+.
T Consensus 253 v~~~d~-~g~~~~~i~ 267 (326)
T 2ghs_A 253 VDRYDT-DGNHIARYE 267 (326)
T ss_dssp EEEECT-TCCEEEEEE
T ss_pred EEEECC-CCCEEEEEE
Confidence 999998 577776653
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.07 E-value=0.00097 Score=79.11 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=47.2
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
+|.|+.||+.+++++++.... .++..-.+.. .+.++++|+.|+.|++||.+||+.+..+...
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~t------agglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYV----TIFNGGTLST------AGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEES----SSCCCCEEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ceeEEEEECCCCCeEeEccCC----CCccCccceE------CCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 378999999999999766532 2222223444 3789999999999999999999999886543
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.06 E-value=0.0025 Score=69.11 Aligned_cols=240 Identities=10% Similarity=0.075 Sum_probs=125.8
Q ss_pred CCCCCEEEEEECCCcEEEEeCC-CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc
Q 003360 240 SKVKNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 240 s~~~~~l~Tgs~DGtVriWD~s-~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
..++..++.++.||.|..+|.. +..+ ...... . .....++ .. +..+++++.+|.|..+|..++...
T Consensus 100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~---W~~~~~--~--~~~~~p~----~~--~~~v~v~~~~g~l~~~d~~tG~~~ 166 (376)
T 3q7m_A 100 TVSGGHVYIGSEKAQVYALNTSDGTVA---WQTKVA--G--EALSRPV----VS--DGLVLIHTSNGQLQALNEADGAVK 166 (376)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEE---EEEECS--S--CCCSCCE----EE--TTEEEEECTTSEEEEEETTTCCEE
T ss_pred eEeCCEEEEEcCCCEEEEEECCCCCEE---EEEeCC--C--ceEcCCE----EE--CCEEEEEcCCCeEEEEECCCCcEE
Confidence 3345678888999999999994 5442 222211 0 0111121 11 457888999999999998755321
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCC-CCeeE-
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS-SGIVS- 396 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~-~~V~s- 396 (826)
+.... .... ...... ...... +..+++|+.+|.|..+|..+++.++......... ..+..
T Consensus 167 -----W~~~~--~~~~-----~~~~~~----~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 167 -----WTVNL--DMPS-----LSLRGE----SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp -----EEEEC--CC----------CCC----CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred -----EEEeC--CCCc-----eeecCC----CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 10000 0000 000000 111122 3468889999999999999999987665321100 00000
Q ss_pred --EEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCC
Q 003360 397 --LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSP 474 (826)
Q Consensus 397 --l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~ 474 (826)
+...|. ..+..+++++.++.+..+|..+|+.+-.... . ....+...
T Consensus 229 ~~~~~~p~----~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~---~~~~~~~~----------------------- 276 (376)
T 3q7m_A 229 SDVDTTPV----VVNGVVFALAYNGNLTALDLRSGQIMWKREL--G---SVNDFIVD----------------------- 276 (376)
T ss_dssp -CCCCCCE----EETTEEEEECTTSCEEEEETTTCCEEEEECC--C---CEEEEEEE-----------------------
T ss_pred cccCCCcE----EECCEEEEEecCcEEEEEECCCCcEEeeccC--C---CCCCceEE-----------------------
Confidence 001110 0256788889999999999999998866421 1 11111111
Q ss_pred CCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccc
Q 003360 475 KENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLK 554 (826)
Q Consensus 475 ~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~ 554 (826)
.+.+++.+.++.+..|+.. ..+.+.+........ ..+... .+..+.+...+|.+.++..-+.+.+.
T Consensus 277 ------~~~l~~~~~~g~l~~~d~~-----tG~~~w~~~~~~~~~-~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 277 ------GNRIYLVDQNDRVMALTID-----GGVTLWTQSDLLHRL-LTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp ------TTEEEEEETTCCEEEEETT-----TCCEEEEECTTTTSC-CCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ------CCEEEEEcCCCeEEEEECC-----CCcEEEeecccCCCc-ccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 1234444455688888876 223333332110111 111111 13345555567888888877776665
Q ss_pred cc
Q 003360 555 ET 556 (826)
Q Consensus 555 ~~ 556 (826)
..
T Consensus 343 ~~ 344 (376)
T 3q7m_A 343 QQ 344 (376)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.03 E-value=0.001 Score=79.14 Aligned_cols=202 Identities=12% Similarity=0.099 Sum_probs=117.0
Q ss_pred cCCCEEEEEEeeCCCeEEEec----C--CcEEEeccCCCceeeccc-ccCCcceeeCCCCCEEEEEECCCc---------
Q 003360 191 LDSSITAMKLITGNSFILSSA----D--EDYSLLAKSVPPLLDFET-KLKDGSQSHSKVKNLFITGHSDGA--------- 254 (826)
Q Consensus 191 h~~~Vt~~~fs~~~~~l~~~~----d--~~i~~w~~~~~~~~~~~~-~h~g~V~~~s~~~~~l~Tgs~DGt--------- 254 (826)
|...+..++||||++.++.+. + ..|++|+........... ..+..-.+|+ |++.|+.++.|..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 344678889999999988633 2 357788765544433211 1111112289 9999998888854
Q ss_pred ----EEEEeCCCCce--eeeeeccccccccccc-CCCCeEEEEEeCCCCEEEEEeC----CCcEEEEEeCCCCCccccce
Q 003360 255 ----INFWDVSCPLF--LLILSLKQQSEKDFSL-SGIPLTALYYDGTSRVLVSGDQ----SGMVRIFKLKYEPHAIENSF 323 (826)
Q Consensus 255 ----VriWD~s~~~~--~~i~~l~~~~~~~~~~-h~~~V~~l~fsp~~~~Lasgs~----dg~V~iwd~~~~~~~~~~~~ 323 (826)
|++|++..... .+++... . |...+..+.|+|++++|+.... +..|.+||+.....
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~--------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~------ 271 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAI--------PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA------ 271 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCS--------GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC------
T ss_pred CCcEEEEEECCCCcccceEEEecC--------CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC------
Confidence 99999843321 1222211 2 3345778999999998865433 24788999874321
Q ss_pred EEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cC---CeEEEEecCCCee--EEeeecccCCCCCeeEE
Q 003360 324 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQ---GYVYLLDTEGPTV--LYQKHIASDISSGIVSL 397 (826)
Q Consensus 324 ~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~d---G~V~vwD~~~~~~--l~~~~~~~~~~~~V~sl 397 (826)
.. ............. |+++|..|+.-+ .+ +.|.++|+.++.. ...+. .+...+.
T Consensus 272 ---------~~-----~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~-- 331 (693)
T 3iuj_A 272 ---------PL-----LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---PERQQVL-- 331 (693)
T ss_dssp ---------CC-----EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCE--
T ss_pred ---------ce-----EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---cCCCCEE--
Confidence 11 1122223334443 566666655444 33 6899999987654 11111 2233343
Q ss_pred EEeecccCCCCCcEEEEEEC-CC--cEEEEECCCCceEEe
Q 003360 398 QFETCSLQGFEKNFLVIATK-DS--SVLVLDSDNGNMLST 434 (826)
Q Consensus 398 ~f~~~~~~~~d~~~l~sgs~-Dg--~V~iwd~~tg~~i~~ 434 (826)
.|++. ++.|+.... ++ .|++|+.. |.....
T Consensus 332 ~~s~~------g~~lv~~~~~~g~~~l~~~d~~-g~~~~~ 364 (693)
T 3iuj_A 332 TVHSG------SGYLFAEYMVDATARVEQFDYE-GKRVRE 364 (693)
T ss_dssp EEEEE------TTEEEEEEEETTEEEEEEECTT-SCEEEE
T ss_pred EEEEE------CCEEEEEEEECCeeEEEEEECC-CCeeEE
Confidence 77773 666666554 44 68999988 444433
No 227
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=98.02 E-value=3e-06 Score=66.68 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=42.5
Q ss_pred chHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHH
Q 003360 774 PSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIA 819 (826)
Q Consensus 774 ~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 819 (826)
.......-+++.||||||+.|.+||++|++.|+.|...|++|.++|
T Consensus 17 ~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 62 (63)
T 1n7s_A 17 VDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566778889999999999999999999999999999999999987
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.97 E-value=0.00051 Score=81.70 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=91.8
Q ss_pred eCCCCCEEEE-----EECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc-------
Q 003360 239 HSKVKNLFIT-----GHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM------- 306 (826)
Q Consensus 239 ~s~~~~~l~T-----gs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~------- 306 (826)
|+|+|++||- |+.+.+|++||+.++..... .+ +......++|+ |++.|+.++.+..
T Consensus 136 ~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~----------~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 136 FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PL----------KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EE----------EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-cc----------CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 9999998884 33345799999955542111 11 11113567899 9999999888743
Q ss_pred ------EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee--ccCCeEEEEEccCCCEEEEEec----CCeEEEEe
Q 003360 307 ------VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK--INGSIISLNMNRNSQHLAVGSD----QGYVYLLD 374 (826)
Q Consensus 307 ------V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~--~~~~V~~l~~s~~g~~lasGs~----dG~V~vwD 374 (826)
|.+|++.+..... .. +.... +...+.++.|+|||++|+.... +..|+++|
T Consensus 204 ~~~~~~v~~~~lgt~~~~~--------------~~----v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDD--------------RL----VFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp -CCCCEEEEEETTSCGGGC--------------EE----EESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred cCCCcEEEEEECCCCcccc--------------eE----EEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 8888877543210 10 11111 2334688999999998876543 24899999
Q ss_pred cCCCe-eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC-C---CcEEEEECCCCce
Q 003360 375 TEGPT-VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK-D---SSVLVLDSDNGNM 431 (826)
Q Consensus 375 ~~~~~-~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~-D---g~V~iwd~~tg~~ 431 (826)
+.++. ....+. .+....... +.+ ++..|+..++ + +.|.++|+.++..
T Consensus 266 ~~~~~~~~~~l~---~~~~~~~~~-~~~------~g~~l~~~t~~~~~~~~l~~~d~~~~~~ 317 (693)
T 3iuj_A 266 LSQENAPLLTVQ---GDLDADVSL-VDN------KGSTLYLLTNRDAPNRRLVTVDAANPGP 317 (693)
T ss_dssp TTSTTCCCEEEE---CSSSSCEEE-EEE------ETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred CCCCCCceEEEe---CCCCceEEE-Eec------cCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 97763 121111 223333333 444 2555554443 3 5799999987654
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.97 E-value=2.5e-06 Score=93.47 Aligned_cols=148 Identities=11% Similarity=0.124 Sum_probs=75.4
Q ss_pred CCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 242 VKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
++..+++|+.||.|+.||+ ++..+ ..... ..+.+..+..++..+++++.||.|+.||..+++...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~---W~~~~----------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w- 73 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK---WTLKE----------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT- 73 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE---EEEEC----------CCSCCCC-----CCEEECTTTCCEEEC-----CCSE-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---EEecC----------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee-
Confidence 5678999999999999998 55442 22321 133344445677788888999999999997553310
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 400 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~ 400 (826)
...+. ........++ +. .+..|++|+.||.|+.||..++++++...... ...+.
T Consensus 74 ----~~~~~----------~~~~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-------~~~~~ 127 (369)
T 2hz6_A 74 ----KLPFT----------IPELVQASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-------ADSLS 127 (369)
T ss_dssp ----ECSCC----------HHHHHTTCSC----C------CCCCEEEEEEEEECCC------------------------
T ss_pred ----eeecc----------CccccccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-------ccccc
Confidence 00000 0000001111 11 24468888999999999999999886554211 12334
Q ss_pred ecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 401 TCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 401 ~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
| ++..+++++.|+.|+.||..+|+.+..+
T Consensus 128 p------~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 128 P------STSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp -----------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred c------cCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 4 4788999999999999999999877554
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.97 E-value=0.00044 Score=75.20 Aligned_cols=76 Identities=4% Similarity=-0.098 Sum_probs=57.9
Q ss_pred EEEccCCCEEEEEec-C--------CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCc-EEEEEE-CCCc
Q 003360 352 LNMNRNSQHLAVGSD-Q--------GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-FLVIAT-KDSS 420 (826)
Q Consensus 352 l~~s~~g~~lasGs~-d--------G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~-~l~sgs-~Dg~ 420 (826)
++++++++++.++.. + +.+.+||+.+.+++...... .....+.|++ |+. .+++.. .+++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~------Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQ------DGASDNYANSAGTEV 338 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECC------SSSCEEEEEETTTTE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECC------CCCEEEEEccCCCCe
Confidence 689999998887654 2 35669999999988554432 1477899998 576 455555 5899
Q ss_pred EEEEECCCCceEEeeec
Q 003360 421 VLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 421 V~iwd~~tg~~i~~~~~ 437 (826)
|.+||..+++.+.++.+
T Consensus 339 VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 339 LDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEEEESSSCEEEEECCC
T ss_pred EEEEECCCCcEEEEEEC
Confidence 99999999999988643
No 231
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.95 E-value=0.084 Score=65.87 Aligned_cols=428 Identities=12% Similarity=0.163 Sum_probs=206.8
Q ss_pred cceEEEecCCCCCEEEEEEecCcEEEEeCCCccccccccccccccccccccCCCCCCcCCeEEEEEeeeCCCCceEEEEc
Q 003360 15 QVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMG 94 (826)
Q Consensus 15 ~i~slcW~~p~g~~latg~~DGsI~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~l~W~~~~~~~g~lli~g 94 (826)
.+.|.+.+..++.+++.+.++|.+.+-.+........ ...+..+.+.+-.....-..+.+. +.|.||+..
T Consensus 275 ~i~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~~~------~~~V~~l~i~~~~~~~~~ssl~~l----~~g~lFvgS 344 (1158)
T 3ei3_A 275 TIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDG------TVTLKDLRVELLGETSIAECLTYL----DNGVVFVGS 344 (1158)
T ss_dssp CEEEEEECSTTSSEEEEEETTCEEEEEEEEEEC-----------CEEEEEEEEEEEECSCCSEEEEC----STTEEEEEC
T ss_pred eEEEEEEEecCCCEEEEEeCCCCEEEEEEEEcCCccC------ceeEEEEEEEEcCCccCccEEEEE----CCCEEEEEE
Confidence 4555555556778999999999998865543100000 000111111000000000122222 234555542
Q ss_pred cCCcCccceeEEEEcccCCc-ceeEEEeecCCCceeeEEEecCCCCCCCCCCceEEEec---cCccEEEecchhHHHHHh
Q 003360 95 ASDFVSMNLLQIVLLNEQTE-SRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLG---KSGHFYAFDDCQIERYLL 170 (826)
Q Consensus 95 g~~~~~~~~~~vl~~~~~~~-~~~~~~~l~~~~~~~d~~~l~~~~~~~~~~~~~liv~~---~~G~l~~~d~~~i~~~~~ 170 (826)
..|...++++........ +-.+.-.++.-+|+.||.+.... ...++.+++++ ..|.|.++-.+-
T Consensus 345 --~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~----~~~~~~i~~~sG~g~~gsL~~lr~Gi------ 412 (1158)
T 3ei3_A 345 --RLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLE----RQGQGQLVTCSGAFKEGSLRIIRNGI------ 412 (1158)
T ss_dssp --SSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTT----SSSCCEEEEEECCGGGCEEEEEEESB------
T ss_pred --ecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccC----CCCCCeEEEEECcCCCCeEEEEecCC------
Confidence 233344444433322111 11233456777899999987532 12234555544 346666542221
Q ss_pred hccCCCCCCCCccceeeecccCCCEEEEEEe---eCCCeEEEec-CCcEEEeccCCCceeecccccCCcceeeCCCCCEE
Q 003360 171 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLI---TGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLF 246 (826)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs---~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~~s~~~~~l 246 (826)
.+ .......++.. ..++.+... ..+.+++.+. +++ +++......+... ... .|..+...|
T Consensus 413 ------~~--~~~~~~~l~gv-~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e~veev--~~~----gf~~~~~TL 476 (1158)
T 3ei3_A 413 ------GI--HEHASIDLPGI-KGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGEEVEET--ELM----GFVDDQQTF 476 (1158)
T ss_dssp ------CE--EEEEEECCCSC-CEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETTEEEEE--CCT----TCCSSSCEE
T ss_pred ------CE--EEEEeecCCCc-cEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCCccccc--ccc----cccCCCCcE
Confidence 00 00011112221 344444432 2345666666 555 2332111111111 000 144444555
Q ss_pred EEEECC---------CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCC
Q 003360 247 ITGHSD---------GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH 317 (826)
Q Consensus 247 ~Tgs~D---------GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~ 317 (826)
++|.-. ..||+.+...... +..... ..+..|.+.+.+. .+++.++ .+.+.++.+..+.
T Consensus 477 ~~~~l~~~~ivQVt~~~Irli~~~~~~~--~~~w~~-------p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~- 543 (1158)
T 3ei3_A 477 FCGNVAHQQLIQITSASVRLVSQEPKAL--VSEWKE-------PQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQE- 543 (1158)
T ss_dssp EEEEETTTEEEEEESSCEEEEESSSCCE--EEEECC-------TTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTE-
T ss_pred EEEEcCCCeEEEEecCEEEEEECCCCeE--EEEEEC-------CCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCc-
Confidence 555421 2355555532211 111211 1224566666543 3566665 6788888876311
Q ss_pred ccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC------CCEEEEEec-CCeEEEEecCCCeeEEeeecccCC
Q 003360 318 AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN------SQHLAVGSD-QGYVYLLDTEGPTVLYQKHIASDI 390 (826)
Q Consensus 318 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~------g~~lasGs~-dG~V~vwD~~~~~~l~~~~~~~~~ 390 (826)
+. . .........|+|+++.+. +.++|+|.+ |++|+|+++.+.+.+....+. .
T Consensus 544 -----L~-----------~---~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~--~ 602 (1158)
T 3ei3_A 544 -----LR-----------Q---ISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG--G 602 (1158)
T ss_dssp -----EE-----------E---EEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC--S
T ss_pred -----ee-----------e---ecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC--C
Confidence 11 0 222234668999999864 369999997 999999999887777544432 2
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEEECCCcEE--EEECCCCceEEeeeccCCCCCcceEEEEecCCCCcccCcccccccc
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIATKDSSVL--VLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAG 468 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~--iwd~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~ 468 (826)
...+.++.+... . ...+|++|-.||.+. .+|..+|.+...-.... ....+.+..+..
T Consensus 603 ~~~p~si~l~~~--~--~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L--G~~pv~L~~~~~--------------- 661 (1158)
T 3ei3_A 603 EIIPRSILMTTF--E--SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL--GTQPTVLRTFRS--------------- 661 (1158)
T ss_dssp SCCEEEEEEEEE--T--TEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC--CSSCCEEEEEES---------------
T ss_pred CCCCcEEEEEEe--C--CCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc--CCCceEEEEEee---------------
Confidence 235566665543 1 257899999999874 45555676553311111 112233333321
Q ss_pred ccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeee-CCceEEEEEEeeceEEEecc
Q 003360 469 MNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS-GSDVGLMLLFTSGKFEIRSL 547 (826)
Q Consensus 469 ~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~-~~~~~lv~~~~~G~I~i~sl 547 (826)
.....|++|+++-.-+|.-.+ +-.+..+.. ....+++.|.+ .-..++++.. ++.++|..+
T Consensus 662 -----------~~~~~V~a~s~rp~liy~~~~-----~l~~s~l~~--~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i 722 (1158)
T 3ei3_A 662 -----------LSTTNVFACSDRPTVIYSSNH-----KLVFSNVNL--KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTI 722 (1158)
T ss_dssp -----------SSCEEEEEESSSCEEEEESSS-----SEEEEEBSS--SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEE
T ss_pred -----------CCceeEEEECCCCEEEEEcCC-----ceEEeccCh--HHhceEeccCcccCCCcEEEEc-CCceEEEEe
Confidence 012367778787766765431 111222222 23334555555 3345666554 455899888
Q ss_pred CCccccc
Q 003360 548 PELSLLK 554 (826)
Q Consensus 548 P~L~~l~ 554 (826)
+.+..+.
T Consensus 723 ~~~~~~~ 729 (1158)
T 3ei3_A 723 DEIQKLH 729 (1158)
T ss_dssp CCSSSEE
T ss_pred cccCCee
Confidence 8765543
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.87 E-value=0.0063 Score=72.11 Aligned_cols=86 Identities=14% Similarity=0.227 Sum_probs=52.7
Q ss_pred EEEEEeCCCCEEEEEeCCCc-------------------EEEEEeCCCCCccccceEEEeecC-CCCeEEEEEEEEeecc
Q 003360 287 TALYYDGTSRVLVSGDQSGM-------------------VRIFKLKYEPHAIENSFLSFTGSK-KGNSHIIHSVKVMKIN 346 (826)
Q Consensus 287 ~~l~fsp~~~~Lasgs~dg~-------------------V~iwd~~~~~~~~~~~~~~i~~s~-~~~~~~~~~~~~~~~~ 346 (826)
..++++|+..+++++..++. |..||..+++.. ....... +... ....
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~-----W~~~~~~~d~wd--------~~~~ 304 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV-----WHYQTTPGDAWD--------YTAT 304 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE-----EEEESSTTCCSC--------CCCC
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee-----EeeecCCccccc--------ccCC
Confidence 36789999999999988874 788888755321 1100000 0000 0011
Q ss_pred CCeEEEEEccCCC---EEEEEecCCeEEEEecCCCeeEEeee
Q 003360 347 GSIISLNMNRNSQ---HLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 347 ~~V~~l~~s~~g~---~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
.++.......+|+ .|+.++.+|.++++|..+++++....
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 346 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKG 346 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccc
Confidence 2222223333564 68899999999999999999985443
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.76 E-value=0.036 Score=56.72 Aligned_cols=201 Identities=9% Similarity=-0.012 Sum_probs=117.7
Q ss_pred CCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCC-CCEEEEEECCCcEEEEeCCCCceee
Q 003360 193 SSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKV-KNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
..+..+++.+++..++.+. .+.|..++........+.......... ++++ +.++++-..++.|.++|..+.....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 3567889998776666554 667777765433222221111112223 7775 5566777778899999986544211
Q ss_pred eeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
+ +. ........++++|++..|.++.. .+.|..+++..... .. +.. .
T Consensus 116 ~--~~--------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~----------------~~----~~~-~ 164 (267)
T 1npe_A 116 L--FD--------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----------------RI----LAQ-D 164 (267)
T ss_dssp E--EC--------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----------------EE----EEC-T
T ss_pred E--EE--------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc----------------EE----EEE-C
Confidence 1 11 01135689999997766666554 35777777652211 00 100 1
Q ss_pred ccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEE
Q 003360 345 INGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVL 422 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~ 422 (826)
.-.....+++++++..|.++. ..+.|.++|+.+........ . ......++.. +..|+++. ..+.|.
T Consensus 165 ~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~-~~~P~gi~~d--------~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---G-LQYPFAVTSY--------GKNLYYTDWKTNSVI 232 (267)
T ss_dssp TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---C-CCSEEEEEEE--------TTEEEEEETTTTEEE
T ss_pred CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---C-CCCceEEEEe--------CCEEEEEECCCCeEE
Confidence 123478899999877665554 56899999997654332111 1 1223445432 34455554 568999
Q ss_pred EEECCCCceEEeee
Q 003360 423 VLDSDNGNMLSTNL 436 (826)
Q Consensus 423 iwd~~tg~~i~~~~ 436 (826)
++|..+|+.+.++.
T Consensus 233 ~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 233 AMDLAISKEMDTFH 246 (267)
T ss_dssp EEETTTTEEEEEEC
T ss_pred EEeCCCCCceEEEc
Confidence 99999999887763
No 234
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.75 E-value=1.7e-05 Score=67.80 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=50.4
Q ss_pred cchHHHHHhhCCCCCCcchHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003360 757 GAVDQIKKKYGFSHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHD 822 (826)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~ 822 (826)
..+.+|+.+-- ++.......-+++.||||||+.|.+||++|++.|+.|...|++|.++|-=+
T Consensus 30 d~l~~vq~eld----eVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwk 91 (96)
T 1sfc_A 30 RRLQQTQAQVD----EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 91 (96)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555533 344677778889999999999999999999999999999999999987533
No 235
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.74 E-value=0.0051 Score=68.04 Aligned_cols=150 Identities=10% Similarity=0.022 Sum_probs=96.7
Q ss_pred CCCCEEEEE-ECC----CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe----------CCC
Q 003360 241 KVKNLFITG-HSD----GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD----------QSG 305 (826)
Q Consensus 241 ~~~~~l~Tg-s~D----GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs----------~dg 305 (826)
++++.+.+. ..+ ++|.+.|...... +..+. .-..+ .+.++|+++.|+++. .++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~v--v~~I~--------vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRI--LGMTD--------GGFLP--HPVAAEDGSFFAQASTVFERIARGKRTD 149 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEE--EEEEE--------ECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEE--EEEEE--------CCCCC--ceEECCCCCEEEEEeccccccccCCCCC
Confidence 445544444 433 7999999954442 22232 12234 899999999888886 467
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-e----ccCCeEEEEEccCCCEEEEEec--CCeEEEEecCCC
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM-K----INGSIISLNMNRNSQHLAVGSD--QGYVYLLDTEGP 378 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~-~----~~~~V~~l~~s~~g~~lasGs~--dG~V~vwD~~~~ 378 (826)
.|.++|..+.... .. +... . .......+.|+|||+++.+++. ++.|.++|+.+.
T Consensus 150 ~VsviD~~t~~vv-----~~--------------I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~ 210 (426)
T 3c75_H 150 YVEVFDPVTFLPI-----AD--------------IELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK 210 (426)
T ss_dssp EEEEECTTTCCEE-----EE--------------EEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEEEECCCCcEE-----EE--------------EECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence 8999998854321 01 1111 0 0122456899999999999874 588999999999
Q ss_pred eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEE
Q 003360 379 TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLS 433 (826)
Q Consensus 379 ~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~ 433 (826)
+++.+..... +....|. ....+++.+.||++.+.+..+++...
T Consensus 211 kvv~~I~v~g-------~~~~~p~-----g~~~~v~~~~dG~~~~V~~~~~~v~~ 253 (426)
T 3c75_H 211 TFDRMLDVPD-------CYHIFPA-----SPTVFYMNCRDGSLARVDFADGETKV 253 (426)
T ss_dssp EEEEEEECCS-------EEEEEEE-----ETTEEEEEETTSSEEEEECCTTCCEE
T ss_pred eEEEEEEcCC-------ceeeccC-----CCcEEEEEcCCCCEEEEECCCCcEEE
Confidence 9886555321 1222231 14567778889999999997666553
No 236
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.72 E-value=0.0022 Score=69.00 Aligned_cols=228 Identities=11% Similarity=0.082 Sum_probs=123.1
Q ss_pred CCEEEEEEeeCCCeEEEec---CCcEEEeccCCCceeecc-c-----ccCCccee--eCCCCCEEEEEEC-----CCcEE
Q 003360 193 SSITAMKLITGNSFILSSA---DEDYSLLAKSVPPLLDFE-T-----KLKDGSQS--HSKVKNLFITGHS-----DGAIN 256 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~~-~-----~h~g~V~~--~s~~~~~l~Tgs~-----DGtVr 256 (826)
..++.++++++++.+++.. ++.+++|......+..+. + .|...+.. ++++++++++-.. ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 5678899999999988853 343455532222333321 1 12334444 8889888887654 68899
Q ss_pred EEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEE-EEEe---CCCcEEEEEeCCCCCcccc----ceE--EE
Q 003360 257 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL-VSGD---QSGMVRIFKLKYEPHAIEN----SFL--SF 326 (826)
Q Consensus 257 iWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~L-asgs---~dg~V~iwd~~~~~~~~~~----~~~--~i 326 (826)
+||.....+...+.+... ...+...+..|++++++..+ ++.. .++.|.+||+.++...... ... ..
T Consensus 97 ~~d~~tg~~~~~~~~~~~----~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPP----ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI 172 (343)
T ss_dssp EEETTTTEEEEEEECCTT----TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred EEECCCCeEEEEEECChh----hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence 999954442222222211 11233467899999875555 4444 5789999998755321000 000 00
Q ss_pred eecCCCCeEEEEE--EEEeeccCCeEEEEEccCCCEEEEEecCC-eEEEEecC---CCee-----EEeeecccCCCCCee
Q 003360 327 TGSKKGNSHIIHS--VKVMKINGSIISLNMNRNSQHLAVGSDQG-YVYLLDTE---GPTV-----LYQKHIASDISSGIV 395 (826)
Q Consensus 327 ~~s~~~~~~~~~~--~~~~~~~~~V~~l~~s~~g~~lasGs~dG-~V~vwD~~---~~~~-----l~~~~~~~~~~~~V~ 395 (826)
.+..++....... -........+..|+|+|+|+.|.++..++ .|..+|.. .+.. ...+.. .++.....
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~~g~pd 251 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER-YSEKPICD 251 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE-EEECCSCS
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe-cccCCCCc
Confidence 0001111000000 00000123468899999999999888776 44444432 1110 000000 01122345
Q ss_pred EEEEeecccCCCCCcEEEEEECCCcEEEEECCCCce
Q 003360 396 SLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 396 sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
.+++++ ++.++++...++.|.+||..+|+.
T Consensus 252 gia~d~------~G~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 252 GISIDK------DHNIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp CEEECT------TCCEEEEEGGGTEEEEEETTTTEE
T ss_pred eEEECC------CCCEEEEccCCCeEEEEECCCCCE
Confidence 577777 577777777889999999855764
No 237
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.64 E-value=0.086 Score=63.38 Aligned_cols=214 Identities=13% Similarity=0.174 Sum_probs=125.6
Q ss_pred CCCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccc-------cCCccee--eCCCCCEEEEEECCCcEEEEeCCC
Q 003360 192 DSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETK-------LKDGSQS--HSKVKNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~-------h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~ 262 (826)
...|.++....++...+...++-+..|+.....+..+... ....|.+ ..+++.+.+ |+.+ -|.+||...
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~ 291 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGT 291 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTT
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCC
Confidence 4568888777776654443343455665544333333111 1244666 456666444 5555 588899865
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
..... +.......-......|.+|...+++. |-+|+.++-|..|+...... ..+.......
T Consensus 292 ~~~~~---~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~------~~~~~~~~~~--------- 352 (795)
T 4a2l_A 292 DSFAS---YSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF------KNIRNIPYKN--------- 352 (795)
T ss_dssp TEEEE---ECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS------EEECCCTTSS---------
T ss_pred CeEEE---EecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc------eEEcCCCCCC---------
Confidence 55322 21110111123446899999999887 44577777788888653321 1111000000
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc-----cCCCCCeeEEEEeecccCCCCCcEEEEEEC
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA-----SDISSGIVSLQFETCSLQGFEKNFLVIATK 417 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~-----~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~ 417 (826)
......|.++...++|. |-+|+.++-|..||..++......... ......|.++.... ++..|++|+.
T Consensus 353 ~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~------~g~~lWigt~ 425 (795)
T 4a2l_A 353 SLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE------KKSLVYIGTH 425 (795)
T ss_dssp SCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET------TTTEEEEEET
T ss_pred CCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC------CCCEEEEEeC
Confidence 01134599999999886 667888877899999877654222110 01235688887765 3555899998
Q ss_pred CCcEEEEECCCCceEE
Q 003360 418 DSSVLVLDSDNGNMLS 433 (826)
Q Consensus 418 Dg~V~iwd~~tg~~i~ 433 (826)
++-|..||..++++..
T Consensus 426 ~~Gl~~~d~~~~~~~~ 441 (795)
T 4a2l_A 426 AGGLSILHRNSGQVEN 441 (795)
T ss_dssp TTEEEEEETTTCCEEE
T ss_pred cCceeEEeCCCCcEEE
Confidence 8889999999887543
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.60 E-value=0.0027 Score=67.06 Aligned_cols=217 Identities=9% Similarity=0.060 Sum_probs=119.3
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEecCCcEEEeccCCCce
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPL 225 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~ 225 (826)
..+++++..|.|+.|| ..-+ ...........+..+.+..++ .++.+.++ +..++......
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~-----------------~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~-l~~~d~~g~~~ 90 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGS-----------------VKWFFKSGEIIECRPSIGKDG-TIYFGSDK-VYAINPDGTEK 90 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSC-----------------EEESSCGGGEEEECCEETTTT-EECCSSCE-EEEECCCGGGG
T ss_pred CeEEEEcCCCEEEEEC-CCCc-----------------EEEEEecCCCcccceEEecCC-cEEEecCc-EEEECCCCcEE
Confidence 4466677778888888 4310 000011122233444444444 45555544 66665432222
Q ss_pred eecccccCCccee---eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe
Q 003360 226 LDFETKLKDGSQS---HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD 302 (826)
Q Consensus 226 ~~~~~~h~g~V~~---~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs 302 (826)
..+ .....+.. .. +..|..|+.+|.|..+|..+... .... .+...+.++...+++. +.+|+
T Consensus 91 ~~~--~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~g~~~---~~~~--------~~~~~~~~~~~~~~g~-l~vgt 154 (330)
T 3hxj_A 91 WRF--DTKKAIVSDFTIF--EDILYVTSMDGHLYAINTDGTEK---WRFK--------TKKAIYATPIVSEDGT-IYVGS 154 (330)
T ss_dssp GGS--CC-----CCEEEE--TTEEEEECTTSEEEEECTTSCEE---EEEE--------CSSCCCSCCEECTTSC-EEEEC
T ss_pred EEE--ECCCCcccCceEE--CCEEEEEecCCEEEEEcCCCCEE---EEEc--------CCCceeeeeEEcCCCE-EEEEc
Confidence 222 11122212 32 55677788899999999873331 1111 1222345566666666 66677
Q ss_pred CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEE
Q 003360 303 QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY 382 (826)
Q Consensus 303 ~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~ 382 (826)
.++.|..||.. +... .........+.++.+.+++. |.+|+ +.|..+| .++..++
T Consensus 155 ~~~~l~~~d~~-g~~~---------------------~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~ 208 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEK---------------------WRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKW 208 (330)
T ss_dssp TTSEEEEECTT-SCEE---------------------EEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEE
T ss_pred CCCEEEEECCC-CCEe---------------------EEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEE
Confidence 88888888876 3210 11111233466677777776 55566 7789999 6777765
Q ss_pred eeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 383 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 383 ~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
.... ....+.++...+ ...|++++.++.|..+|. +|+.+..+
T Consensus 209 ~~~~---~~~~~~~~~~~~-------~g~l~v~t~~~gl~~~~~-~g~~~~~~ 250 (330)
T 3hxj_A 209 NFYA---GYWTVTRPAISE-------DGTIYVTSLDGHLYAINP-DGTEKWRF 250 (330)
T ss_dssp EECC---SSCCCSCCEECT-------TSCEEEEETTTEEEEECT-TSCEEEEE
T ss_pred EEcc---CCcceeceEECC-------CCeEEEEcCCCeEEEECC-CCCEeEEe
Confidence 4442 223455555544 346888898899999985 57666554
No 239
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=97.59 E-value=1.6e-05 Score=65.59 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=49.6
Q ss_pred ccchHHHHHhhCCCCCCcchHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHH
Q 003360 756 TGAVDQIKKKYGFSHSGEPSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIA 819 (826)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 819 (826)
...+.+|+.+-. ++.......-+++.||||||+.|.+||++|++.|+.|...|++|-++|
T Consensus 14 ~d~l~~vq~el~----ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~ 73 (80)
T 1l4a_A 14 SKRLQQTQAQVE----EVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKF 73 (80)
T ss_dssp SCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHC
T ss_pred ccHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666543 344677778889999999999999999999999999999999998775
No 240
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=97.51 E-value=2e-05 Score=70.11 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=42.9
Q ss_pred chHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHh
Q 003360 774 PSVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAE 820 (826)
Q Consensus 774 ~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 820 (826)
.......-+++.||||||+.|++||++|+++|+.|...|++|.++|-
T Consensus 46 k~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmw 92 (119)
T 2kog_A 46 VDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 92 (119)
T ss_dssp HHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778899999999999999999999999999999999999874
No 241
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.49 E-value=5.4e-05 Score=64.07 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=41.5
Q ss_pred hHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHhh
Q 003360 775 SVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEH 821 (826)
Q Consensus 775 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~ 821 (826)
.....--+++.||||||+.|.+||++|+++|+.|...|++|-++|-=
T Consensus 19 ~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmww 65 (91)
T 3hd7_A 19 DIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 65 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667999999999999999999999999999999999998743
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.49 E-value=0.0032 Score=66.47 Aligned_cols=214 Identities=10% Similarity=0.061 Sum_probs=119.5
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCC
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVP 223 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~ 223 (826)
+..+++.+..|.|+.||...- . ......+...+.++...+++. ++.+. ++.+..++....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~--~----------------~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~g~ 167 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGT--E----------------KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPDGT 167 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSC--E----------------EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTTSC
T ss_pred CCEEEEEecCCEEEEEcCCCC--E----------------EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCCCC
Confidence 355777777888988886520 0 011112222334444555665 45555 688888876532
Q ss_pred ceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 224 PLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 224 ~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
....+. .....+.+ ..+++.+++.. +.|..||.++... .... .....+.++...+++. |.++
T Consensus 168 ~~~~~~-~~~~~~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~---~~~~--------~~~~~~~~~~~~~~g~-l~v~ 231 (330)
T 3hxj_A 168 EKWRFK-TNDAITSAASIGKDGTIYFGS---DKVYAINPDGTEK---WNFY--------AGYWTVTRPAISEDGT-IYVT 231 (330)
T ss_dssp EEEEEE-CSSCCCSCCEECTTCCEEEES---SSEEEECTTSCEE---EEEC--------CSSCCCSCCEECTTSC-EEEE
T ss_pred EeEEEe-cCCCceeeeEEcCCCEEEEEe---CEEEEECCCCcEE---EEEc--------cCCcceeceEECCCCe-EEEE
Confidence 222221 11223333 55677766544 8899999544432 1121 1224577788888775 5556
Q ss_pred eCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 302 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 302 s~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
+.++.|..|+.. +. .. .........+.++.+.+++ .|.+|+.+|.|..+|. +++.+
T Consensus 232 t~~~gl~~~~~~-g~-----------------~~----~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 232 SLDGHLYAINPD-GT-----------------EK----WRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp ETTTEEEEECTT-SC-----------------EE----EEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred cCCCeEEEECCC-CC-----------------Ee----EEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence 677777777632 11 10 1111112223345555566 5788899989999996 67766
Q ss_pred EeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 382 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 382 ~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
...... ...+.++.... +..|++++.+|.+++.+..
T Consensus 288 ~~~~~~---~~~~~~~~~d~-------~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 288 WNFETG---SWIIATPVIDE-------NGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp EEEECS---SCCCSCCEECT-------TCCEEEECTTSCEEEEEC-
T ss_pred EEEEcC---CccccceEEcC-------CCEEEEEcCCCeEEEEecc
Confidence 554431 23344444433 4568889999999998876
No 243
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=97.45 E-value=7.4e-05 Score=58.16 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHH
Q 003360 776 VAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIA 819 (826)
Q Consensus 776 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 819 (826)
....--+++.||||||+.|.+||++|++.|..|..-|+.|-++|
T Consensus 17 iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 60 (61)
T 3b5n_A 17 IMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAM 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445679999999999999999999999999999999999887
No 244
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.44 E-value=0.017 Score=62.61 Aligned_cols=75 Identities=3% Similarity=-0.135 Sum_probs=54.2
Q ss_pred EEEeCCCCEEEEEeC---------CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCC
Q 003360 289 LYYDGTSRVLVSGDQ---------SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ 359 (826)
Q Consensus 289 l~fsp~~~~Lasgs~---------dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 359 (826)
++|+|+++.+.++.. ++.+.+||+.+.+. +...........|+|+++|+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v----------------------v~~i~vg~~p~gi~~s~Dg~ 326 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT----------------------SGPISNGHDSDAIIAAQDGA 326 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE----------------------EECCEEEEEECEEEECCSSS
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE----------------------EEEEECCCCcceEEECCCCC
Confidence 689999988887643 23567999985533 22222233578999999998
Q ss_pred E-EEEEe-cCCeEEEEecCCCeeEEeee
Q 003360 360 H-LAVGS-DQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 360 ~-lasGs-~dG~V~vwD~~~~~~l~~~~ 385 (826)
+ +++.. .++.|.|||+.+.+++.+..
T Consensus 327 ~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 327 SDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 5 45555 48999999999999985543
No 245
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.40 E-value=0.0077 Score=64.61 Aligned_cols=212 Identities=7% Similarity=0.011 Sum_probs=117.3
Q ss_pred ccCCCEEEEEEeeCCCeEEEec------CCcEEEeccCCCc-eeecccc-----cCCccee--eCCC-CCEEEEEE---C
Q 003360 190 FLDSSITAMKLITGNSFILSSA------DEDYSLLAKSVPP-LLDFETK-----LKDGSQS--HSKV-KNLFITGH---S 251 (826)
Q Consensus 190 ~h~~~Vt~~~fs~~~~~l~~~~------d~~i~~w~~~~~~-~~~~~~~-----h~g~V~~--~s~~-~~~l~Tgs---~ 251 (826)
.|-..+..+++.++++..++.. +..|.+|+..... ...+..+ +...... ++++ +.++++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3446788999999987666543 3578888755433 2222111 1122333 6764 56677776 7
Q ss_pred CCcEEEEeCCCCceeeeeecccc-cc----ccccc----------------CCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 003360 252 DGAINFWDVSCPLFLLILSLKQQ-SE----KDFSL----------------SGIPLTALYYDGTSRVLVSGDQSGMVRIF 310 (826)
Q Consensus 252 DGtVriWD~s~~~~~~i~~l~~~-~~----~~~~~----------------h~~~V~~l~fsp~~~~Lasgs~dg~V~iw 310 (826)
++.|.+||....... ..+... .. ..+.. -...+..|+|+|+++.|+++..++. ++|
T Consensus 144 ~~~i~v~d~~~g~~~--r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~ 220 (343)
T 2qe8_A 144 KAALIRVDLQTGLAA--RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMY 220 (343)
T ss_dssp GCEEEEEETTTCCEE--EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEE
T ss_pred CCeEEEEECCCCCEE--EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEE
Confidence 899999999433321 112110 00 00000 0124688999999999999887774 566
Q ss_pred EeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCC
Q 003360 311 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI 390 (826)
Q Consensus 311 d~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~ 390 (826)
.+....... ..+. ..+-... +......+....++++++|.++++...++.|.+||..+++...... ...
T Consensus 221 ~~~~~~~~~-~~~~---~~~~~~~-----~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~--~~~ 289 (343)
T 2qe8_A 221 RIKSADLSN-LQLT---DAELGSK-----IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT--DEK 289 (343)
T ss_dssp EEEHHHHTC-TTCC---HHHHHTT-----CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE--CGG
T ss_pred EEEHHHhcC-CCCC---hhhhhcc-----eEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE--CCc
Confidence 654210000 0000 0000000 1111123346678999999988888899999999995565432222 122
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEEECCCcE
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIATKDSSV 421 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V 421 (826)
...+.+++|.+ ++.++++.+..+.+
T Consensus 290 ~~~p~~va~~~------~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 290 LSWTDSFNFGS------DGYLYFDCNQLHHS 314 (343)
T ss_dssp GSCEEEEEECT------TSCEEEEECCGGGS
T ss_pred eecCCeeEECC------CCcEEEEeCccccc
Confidence 44577888876 45555555444333
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.33 E-value=0.078 Score=62.39 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=46.8
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
+|.|..||+.+++++.+..... ++....... .+.++++++.|+.|++||..+|+.+..+...
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~----~~~~~~~~t------~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPT----HWNGGTLST------AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESS----SCCCCEEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceEEEEeCCCCcEEEEccCCC----CCcCceeEe------CCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 4889999999999997665321 222223333 3788999999999999999999999887543
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.31 E-value=0.034 Score=56.67 Aligned_cols=152 Identities=12% Similarity=0.191 Sum_probs=93.7
Q ss_pred eCCCCCEEEEEECCC--cEEEEeC-CCCceeeeeecccccccccccCCCCeE--EEEEeCCCCEEEEEeCCCcEEEEEeC
Q 003360 239 HSKVKNLFITGHSDG--AINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLT--ALYYDGTSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DG--tVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~--~l~fsp~~~~Lasgs~dg~V~iwd~~ 313 (826)
|+ ++.++.+.+.+| +|+++|+ +++.. ..+. .. .... .+++.. .++.+....++.+.+||..
T Consensus 50 ~~-~~~LyestG~~g~S~v~~vD~~Tgkv~---~~~~--------l~-~~~FgeGit~~g-~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 50 YR-NGYFYESTGLNGRSSIRKVDIESGKTL---QQIE--------LG-KRYFGEGISDWK-DKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp EE-TTEEEEEEEETTEEEEEEECTTTCCEE---EEEE--------CC-TTCCEEEEEEET-TEEEEEESSSSEEEEEETT
T ss_pred EE-CCEEEEECCCCCCceEEEEECCCCcEE---EEEe--------cC-CccceeEEEEeC-CEEEEEEeeCCEEEEEECc
Confidence 56 677888888877 9999999 44442 1122 11 1222 233332 2334444568899999987
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCC
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSG 393 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~ 393 (826)
+... +......+ ....+++++..|+....++.|.++|..+.+++.+..... ...+
T Consensus 116 t~~~----------------------~~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~ 170 (262)
T 3nol_A 116 NLRQ----------------------VRSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEE 170 (262)
T ss_dssp TCCE----------------------EEEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEE
T ss_pred cCcE----------------------EEEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCcc
Confidence 4432 22222222 112334567777777778889999999999886555421 1222
Q ss_pred ---eeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECCCCceEEeeec
Q 003360 394 ---IVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 394 ---V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
+..+.|. ++. |++.. .+..|.++|..+|+.+..+..
T Consensus 171 ~~~lNELe~~-------~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 171 LPELNELEWV-------DGE-IFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp CCCEEEEEEE-------TTE-EEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred ccccceeEEE-------CCE-EEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 3345664 254 66665 577999999999999988654
No 248
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.25 E-value=0.22 Score=57.32 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=45.0
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeecc
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 438 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~~ 438 (826)
+|.|..||+.+++++.+..... ++.+..... .+..+++++.|+.|++||..+|+.+..+...
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~----~~~~~~~~t------~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYT------KGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESS----CCCSBCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCeEEEEECCCCCEEEEecCCC----CccceeEEE------CCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 5789999999999986665321 122111222 2677888999999999999999999886543
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.20 E-value=0.17 Score=59.59 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=51.3
Q ss_pred EEEEEeCCCCEEEEEeCCCc-------------------EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec--
Q 003360 287 TALYYDGTSRVLVSGDQSGM-------------------VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-- 345 (826)
Q Consensus 287 ~~l~fsp~~~~Lasgs~dg~-------------------V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-- 345 (826)
..+++.|+..++++++.++. |..+|..+++.. + ..+...+
T Consensus 233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~-----W--------------~~~~~~~~~ 293 (668)
T 1kv9_A 233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA-----W--------------HYQVTPGDS 293 (668)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE-----E--------------EEESSTTCC
T ss_pred cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCcee-----e--------------EeecCCCcc
Confidence 35788999999999988774 666776644321 0 0111111
Q ss_pred -----cCCeEEEEEccCCC---EEEEEecCCeEEEEecCCCeeEEee
Q 003360 346 -----NGSIISLNMNRNSQ---HLAVGSDQGYVYLLDTEGPTVLYQK 384 (826)
Q Consensus 346 -----~~~V~~l~~s~~g~---~lasGs~dG~V~vwD~~~~~~l~~~ 384 (826)
..+.....+..+|+ .|++++.+|.++++|..+++++...
T Consensus 294 wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 294 WDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred ccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 12333333334664 6889999999999999999988544
No 250
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=97.19 E-value=0.00023 Score=57.74 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=40.7
Q ss_pred hHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHh
Q 003360 775 SVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAE 820 (826)
Q Consensus 775 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 820 (826)
.....--+++.||||||+.|.++|++|++.|..|..-|+.|-++|-
T Consensus 22 ~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~w 67 (74)
T 2nps_A 22 DVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMW 67 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556799999999999999999999999999999999988873
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.18 E-value=0.017 Score=59.41 Aligned_cols=157 Identities=8% Similarity=0.059 Sum_probs=94.6
Q ss_pred eCCCCCEEEEEEC--CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 239 HSKVKNLFITGHS--DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~~~~~l~Tgs~--DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
+++++.++++.+. +++|++.|+..... +..+... .......+++.. +++.++...++.|.+||..+.+
T Consensus 28 ~~~dg~Lyvstg~~~~s~v~~iD~~tg~v--~~~i~l~-------~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 28 YAENDTLFESTGLYGRSSVRQVALQTGKV--ENIHKMD-------DSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp ECSTTEEEEEECSTTTCEEEEEETTTCCE--EEEEECC-------TTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTE
T ss_pred EeCCCeEEEECCCCCCCEEEEEECCCCCE--EEEEecC-------CCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCc
Confidence 6777766666554 68999999944432 1222200 111223455542 2444455567899999987432
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeecc-CCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC--CCCC
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKIN-GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD--ISSG 393 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~-~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~--~~~~ 393 (826)
. +...... .. ...++++|+++.++..++.|.++|..+.+++........ .-..
T Consensus 98 v----------------------~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~ 153 (266)
T 2iwa_A 98 N----------------------IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIR 153 (266)
T ss_dssp E----------------------EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred E----------------------EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccc
Confidence 2 1111111 11 133556788888888889999999999888855543221 0112
Q ss_pred eeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECCCCceEEeeec
Q 003360 394 IVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
+..+.|.. + .+++.. .++.|.++|..+|+.+..+.+
T Consensus 154 ~nele~~d-------g-~lyvn~~~~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 154 LNELEYIN-------G-EVWANIWQTDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp EEEEEEET-------T-EEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred ceeEEEEC-------C-EEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence 44566552 5 455555 578999999999999988753
No 252
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.13 E-value=0.087 Score=57.98 Aligned_cols=192 Identities=11% Similarity=0.145 Sum_probs=112.8
Q ss_pred eCCCeEEEec--CCcEEEeccCCC----ceeecccc--c--CCccee-----eCCCCCEEEEEECC------CcEEEEeC
Q 003360 202 TGNSFILSSA--DEDYSLLAKSVP----PLLDFETK--L--KDGSQS-----HSKVKNLFITGHSD------GAINFWDV 260 (826)
Q Consensus 202 ~~~~~l~~~~--d~~i~~w~~~~~----~~~~~~~~--h--~g~V~~-----~s~~~~~l~Tgs~D------GtVriWD~ 260 (826)
.++++++..+ +..|.+++.... .+.....+ . +-+... ..|+| +++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 7888888866 778888865422 22211000 0 111111 67888 88887766 78999998
Q ss_pred CCCceeeeeecccccccccccCC-CCeEEEEEeCCCCEEEEEe-------------------CCCcEEEEEeCCCCCccc
Q 003360 261 SCPLFLLILSLKQQSEKDFSLSG-IPLTALYYDGTSRVLVSGD-------------------QSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 261 s~~~~~~i~~l~~~~~~~~~~h~-~~V~~l~fsp~~~~Lasgs-------------------~dg~V~iwd~~~~~~~~~ 320 (826)
.+... +..+... ... .--..+.|+|+.+.+++.. .+.+|.+||+.++..
T Consensus 172 ~T~~v--~~~~~~~------~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~--- 240 (462)
T 2ece_A 172 YSFEP--LGKWEID------RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR--- 240 (462)
T ss_dssp TTCCE--EEECCSB------CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE---
T ss_pred CCCeE--EEEEccC------CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE---
Confidence 54332 1222210 011 1123577899999888885 368999999984311
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEE--ccCCCEEEEEec------CCeEEEEecCCCeeEEee--ecccC-
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNM--NRNSQHLAVGSD------QGYVYLLDTEGPTVLYQK--HIASD- 389 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~--s~~g~~lasGs~------dG~V~vwD~~~~~~l~~~--~~~~~- 389 (826)
+.. +...........|.| +|+++++.++++ +++|.+|....+...... .+...
T Consensus 241 --~~t--------------I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~ 304 (462)
T 2ece_A 241 --IHS--------------LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEP 304 (462)
T ss_dssp --EEE--------------EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEE
T ss_pred --eeE--------------EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcc
Confidence 000 111101112344545 999999888875 568888777655322111 11110
Q ss_pred --------------CCCCeeEEEEeecccCCCCCcEEEEEEC-CCcEEEEECC
Q 003360 390 --------------ISSGIVSLQFETCSLQGFEKNFLVIATK-DSSVLVLDSD 427 (826)
Q Consensus 390 --------------~~~~V~sl~f~~~~~~~~d~~~l~sgs~-Dg~V~iwd~~ 427 (826)
....+..|.+++ |+++|+++.. .+.|.+||+.
T Consensus 305 v~~~lp~~~~~f~~~~~~pa~I~lS~------DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 305 LEGNLPEILKPFKAVPPLVTDIDISL------DDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCSSCCGGGGGGTEECCCCCCEEECT------TSCEEEEEETTTTEEEEEECS
T ss_pred ccccccccccccccCCCceeEEEECC------CCCEEEEEeCCCCEEEEEEec
Confidence 013466777887 7999988876 5789999985
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.12 E-value=0.16 Score=53.36 Aligned_cols=200 Identities=15% Similarity=0.081 Sum_probs=109.0
Q ss_pred EEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccc-------------------cCCccee--eCC-CCCEEEEEEC
Q 003360 195 ITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETK-------------------LKDGSQS--HSK-VKNLFITGHS 251 (826)
Q Consensus 195 Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~-------------------h~g~V~~--~s~-~~~~l~Tgs~ 251 (826)
...+++.+++..++++. ++.|..|+.....+..+... ..+.... +.+ +++++++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~- 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC- 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET-
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC-
Confidence 45567788888778776 77888786544333322100 0012233 665 566555543
Q ss_pred CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeC-CCCEEEEEeC-----------------CCcEEEEEeC
Q 003360 252 DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQ-----------------SGMVRIFKLK 313 (826)
Q Consensus 252 DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~-----------------dg~V~iwd~~ 313 (826)
.+.|..+|..+.....+.... . .........+++.+ ++++.++-.. +|.|..||..
T Consensus 100 ~~~i~~~d~~~g~~~~~~~~~----~--~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLATSV----D--GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp TTEEEEECTTCEECEEEESEE----T--TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred CCCEEEEeCCCCEEEEecccC----C--CCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 445888887544321211100 0 00113578899999 8876665432 2556666654
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE-ecCCeEEEEecCCC---eeEEeeecccC
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG-SDQGYVYLLDTEGP---TVLYQKHIASD 389 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG-s~dG~V~vwD~~~~---~~l~~~~~~~~ 389 (826)
++.. .. + ...-.....|+++++|++|.++ +..+.|.+||+.+. .......
T Consensus 174 ~~~~-----------------~~---~--~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---- 227 (322)
T 2fp8_A 174 TKET-----------------TL---L--LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---- 227 (322)
T ss_dssp TTEE-----------------EE---E--EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE----
T ss_pred CCEE-----------------EE---e--ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe----
Confidence 2211 00 1 0011234678999999866665 55689999998753 1110011
Q ss_pred CCCCeeEEEEeecccCCCCCcEEEEEEC----------CCcEEEEECCCCceEEee
Q 003360 390 ISSGIVSLQFETCSLQGFEKNFLVIATK----------DSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 390 ~~~~V~sl~f~~~~~~~~d~~~l~sgs~----------Dg~V~iwd~~tg~~i~~~ 435 (826)
... ...+++.+ ++.+.++... .+.|..+|.. |+.+..+
T Consensus 228 ~~g-P~gi~~d~------~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~ 275 (322)
T 2fp8_A 228 IPN-PGNIKRNA------DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVI 275 (322)
T ss_dssp CSS-EEEEEECT------TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEE
T ss_pred CCC-CCCeEECC------CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEE
Confidence 112 56677766 4664444333 3678888875 7777665
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.11 E-value=0.16 Score=53.50 Aligned_cols=195 Identities=13% Similarity=0.062 Sum_probs=106.7
Q ss_pred CEEEEEEee-CCCeEEEecCCcEEEeccCCCceeecccccC----Cccee--eCC-CCCEEEEEEC--------------
Q 003360 194 SITAMKLIT-GNSFILSSADEDYSLLAKSVPPLLDFETKLK----DGSQS--HSK-VKNLFITGHS-------------- 251 (826)
Q Consensus 194 ~Vt~~~fs~-~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~----g~V~~--~s~-~~~~l~Tgs~-------------- 251 (826)
.+..+++.+ ++..+++.....+..++........+..... ..... +.+ +|+++++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence 467888887 5554444344445555543222222211001 11222 778 8888777532
Q ss_pred ---CCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCCCCccccceEEEe
Q 003360 252 ---DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLSFT 327 (826)
Q Consensus 252 ---DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~~~~~~~~~~~i~ 327 (826)
+|.|..||........+ .. .......|+|+|+++.|.++ ...+.|.+|++.....
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~--~~---------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~---------- 219 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLL--LK---------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK---------- 219 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEE--EE---------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT----------
T ss_pred cCCCceEEEEeCCCCEEEEe--cc---------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC----------
Confidence 36788888754432111 00 00234579999999876666 4567899999874321
Q ss_pred ecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec----------CCeEEEEecCCCeeEEeeecccCC-CCCeeE
Q 003360 328 GSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD----------QGYVYLLDTEGPTVLYQKHIASDI-SSGIVS 396 (826)
Q Consensus 328 ~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~----------dG~V~vwD~~~~~~l~~~~~~~~~-~~~V~s 396 (826)
+.... +. ...+ ...|++.++|.+.++... .+.|..+|.. ++.+.......+. -..+++
T Consensus 220 ----~~~~~---~~--~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~ 288 (322)
T 2fp8_A 220 ----GTAEV---LV--KIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQ 288 (322)
T ss_dssp ----TCEEE---EE--ECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCE
T ss_pred ----Cccce---EE--eCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceE
Confidence 00100 11 1234 678999999986665544 4678899974 6655444432221 234566
Q ss_pred EEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 397 LQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 397 l~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+.+. ++.+.++....+.|..+++.
T Consensus 289 ~~~~-------~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 289 IQEH-------DGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEE-------TTEEEEECSSCSEEEEEEC-
T ss_pred EEEe-------CCEEEEeecCCCceEEEecc
Confidence 6652 24444444466788888875
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.02 E-value=0.021 Score=58.25 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=95.3
Q ss_pred CCCEEEEEECCCcEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccc
Q 003360 242 VKNLFITGHSDGAINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE 320 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~ 320 (826)
++.++++.+.+|.|+++|+ +++....+ +.. ...--.+++.. .++.+....++.+.+||..+.+.
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---------~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~--- 128 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---------NIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQR--- 128 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---------TCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEE---
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---------CcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcE---
Confidence 4578888899999999999 55443222 220 01112344443 34555566788999999874322
Q ss_pred cceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCC---CeeEE
Q 003360 321 NSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISS---GIVSL 397 (826)
Q Consensus 321 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~---~V~sl 397 (826)
+........-..|+ ++++.|+++..++.|.++|..+.+++.+..... ... .+..+
T Consensus 129 -------------------~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~v~~lNeL 186 (268)
T 3nok_A 129 -------------------ERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQPVELINEL 186 (268)
T ss_dssp -------------------EEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEE
T ss_pred -------------------EEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCccccccccc
Confidence 22222222222333 567788888889999999999999886555422 122 33455
Q ss_pred EEeecccCCCCCcEEEEEE-CCCcEEEEECCCCceEEeeec
Q 003360 398 QFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 398 ~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
.|.. + .|++.. .+..|.++|..+|+.+..+..
T Consensus 187 e~~d-------G-~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 187 ECAN-------G-VIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp EEET-------T-EEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred EEeC-------C-EEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 6652 5 466665 577999999999999988653
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.00 E-value=0.65 Score=53.59 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=24.9
Q ss_pred cCC---CEEEEEecCCeEEEEecCCCeeEEeee
Q 003360 356 RNS---QHLAVGSDQGYVYLLDTEGPTVLYQKH 385 (826)
Q Consensus 356 ~~g---~~lasGs~dG~V~vwD~~~~~~l~~~~ 385 (826)
.+| ..++.++.+|.++++|..+++++....
T Consensus 318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 466 467779999999999999999997654
No 257
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.96 E-value=0.08 Score=54.34 Aligned_cols=196 Identities=8% Similarity=-0.006 Sum_probs=115.9
Q ss_pred CEEEEEEeeCCCeEEEec---CCcEEEeccCCCceeec-cc-ccCCcceeeCCC-CCEEEEEECCCcEEEEeCCCCceee
Q 003360 194 SITAMKLITGNSFILSSA---DEDYSLLAKSVPPLLDF-ET-KLKDGSQSHSKV-KNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~---d~~i~~w~~~~~~~~~~-~~-~h~g~V~~~s~~-~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
....+.|++++...++.+ +..|++.+......... .. .+..+. .+..+ ++++++.-.++.|.++|..... .
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fge-Gi~~~g~~lyv~t~~~~~v~viD~~t~~--v 98 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGE-GLTLLNEKLYQVVWLKNIGFIYDRRTLS--N 98 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEE-EEEEETTEEEEEETTCSEEEEEETTTTE--E
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceE-EEEEeCCEEEEEEecCCEEEEEECCCCc--E
Confidence 467899998865544443 46788887655443332 11 111111 12222 3566666778999999985433 2
Q ss_pred eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec--
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI-- 345 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-- 345 (826)
+..+... ..+ ...+++++..|+++..+++|.++|..+.... .. +.....
T Consensus 99 ~~~i~~g-----~~~-----g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~-----~~--------------I~Vg~~~~ 149 (266)
T 2iwa_A 99 IKNFTHQ-----MKD-----GWGLATDGKILYGSDGTSILYEIDPHTFKLI-----KK--------------HNVKYNGH 149 (266)
T ss_dssp EEEEECC-----SSS-----CCEEEECSSSEEEECSSSEEEEECTTTCCEE-----EE--------------EECEETTE
T ss_pred EEEEECC-----CCC-----eEEEEECCCEEEEECCCCeEEEEECCCCcEE-----EE--------------EEECCCCc
Confidence 2333311 011 1335667877777778889999998743321 00 111111
Q ss_pred -cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC----------CCCCeeEEEEeecccCCCCCcEEEE
Q 003360 346 -NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD----------ISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 346 -~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~----------~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
-..+..+.|. +|...+....++.|.++|..+++++........ .......|+|.+ ++..+++
T Consensus 150 p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~------~~~~lfV 222 (266)
T 2iwa_A 150 RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ------ENKRIFV 222 (266)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET------TTTEEEE
T ss_pred ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC------CCCEEEE
Confidence 1236778888 675444444678999999999999866654210 113557899998 4555554
Q ss_pred -EECCCcEEEEECCC
Q 003360 415 -ATKDSSVLVLDSDN 428 (826)
Q Consensus 415 -gs~Dg~V~iwd~~t 428 (826)
+....+|.+.++..
T Consensus 223 Tgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 223 TGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTCSEEEEEEEEE
T ss_pred ECCCCCeEEEEEEec
Confidence 55677888887653
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.93 E-value=0.071 Score=54.34 Aligned_cols=184 Identities=11% Similarity=0.056 Sum_probs=106.7
Q ss_pred CCEEEEEEeeCCCeEEEec-CC--cEEEeccCCCceeecccccCCccee--eCCCC-CEEEEEECCCcEEEEeCCCCcee
Q 003360 193 SSITAMKLITGNSFILSSA-DE--DYSLLAKSVPPLLDFETKLKDGSQS--HSKVK-NLFITGHSDGAINFWDVSCPLFL 266 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~--~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~-~~l~Tgs~DGtVriWD~s~~~~~ 266 (826)
+....+.|+ ++....+.+ ++ .++.++......... ......... ..+++ ++++....++.+.+||.....
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~-~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~-- 118 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ-IELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR-- 118 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE-EECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC--
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE-EecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc--
Confidence 445778887 665555555 55 788887665444332 111222222 23333 455666678999999994333
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec-
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI- 345 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~- 345 (826)
.+.++.+. .+ ...+++++..|+++..++.|.++|..+..... . +.....
T Consensus 119 ~~~ti~~~------~e-----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~-----~--------------I~V~~~g 168 (262)
T 3nol_A 119 QVRSFNYD------GE-----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVR-----T--------------ITVTAHG 168 (262)
T ss_dssp EEEEEECS------SC-----CCCEEECSSCEEECCSSSEEEEECTTTCSEEE-----E--------------EECEETT
T ss_pred EEEEEECC------CC-----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEE-----E--------------EEeccCC
Confidence 12334422 11 12344677777777778889988877433210 0 111111
Q ss_pred --cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccC---------CCCCeeEEEEeecccCCCCCcEEEE
Q 003360 346 --NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASD---------ISSGIVSLQFETCSLQGFEKNFLVI 414 (826)
Q Consensus 346 --~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~---------~~~~V~sl~f~~~~~~~~d~~~l~s 414 (826)
-..+..|.|. +|...|....+..|.++|..+++++........ .......|+|+| ++..|++
T Consensus 169 ~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp------~~~~lfV 241 (262)
T 3nol_A 169 EELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK------EHHRLFV 241 (262)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET------TTTEEEE
T ss_pred ccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC------CCCEEEE
Confidence 1235567776 676555555688999999999999866654211 123457899998 4667776
Q ss_pred EEC
Q 003360 415 ATK 417 (826)
Q Consensus 415 gs~ 417 (826)
.+.
T Consensus 242 TGK 244 (262)
T 3nol_A 242 TGK 244 (262)
T ss_dssp EET
T ss_pred ECC
Confidence 664
No 259
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.92 E-value=0.32 Score=51.47 Aligned_cols=193 Identities=10% Similarity=0.051 Sum_probs=107.2
Q ss_pred CEEEEEEeeCCCeEEEecCC-cEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeee
Q 003360 194 SITAMKLITGNSFILSSADE-DYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILS 270 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~d~-~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~ 270 (826)
.+..+.+..++..++.+.++ .++..+....+.... .++.+.+.+ +.+++.+++.+...+..+-+|..+.....+
T Consensus 123 ~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~-~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-- 199 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALV-QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-- 199 (327)
T ss_dssp CEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEE-CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE--
T ss_pred CeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEee-cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC--
Confidence 35667777777766666555 345555444343322 344555666 788888887765544444455434443221
Q ss_pred cccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe--eccCC
Q 003360 271 LKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM--KINGS 348 (826)
Q Consensus 271 l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~--~~~~~ 348 (826)
. ......+..+.+.+++..+++ +.+|.+.+++...+.. +.+ +... .....
T Consensus 200 -~-------~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~t----------W~~---------~~~~~~~~~~~ 251 (327)
T 2xbg_A 200 -N-------RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSEN----------WGE---------LLSPLRRNSVG 251 (327)
T ss_dssp -E-------CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEE----------ECC---------CBCTTSSCCSC
T ss_pred -C-------CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCe----------eEe---------ccCCcccCCcc
Confidence 1 123357889999998876654 4678776654210100 000 0000 01224
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEEC
Q 003360 349 IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 426 (826)
Q Consensus 349 V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~ 426 (826)
+.++.+.+++.++++|. +|.| ++....+..-............+.++.|.. ...+++++.+|.|.-++.
T Consensus 252 ~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-------~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-------PDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-------TTEEEEECSTTEEEEECC
T ss_pred eEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-------CCceEEEcCCceEEEEcC
Confidence 78899998887666655 6766 444444432211111112235677888875 455778888998877764
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.86 E-value=0.31 Score=56.25 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=44.6
Q ss_pred cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 366 DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 366 ~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
.+|.|..||+.+++++.+..... ++.+-.... .+..+++++.|+.|+.||.++|+.+-.+..
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~t------agg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERF----AVWGGTMAT------AGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS----CCCSBCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CcCeEEEEECCCCCEEeEecCCC----CccCcceEe------cCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 35789999999999987664321 111101111 377888999999999999999999988643
No 261
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.84 E-value=0.00048 Score=54.24 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=36.0
Q ss_pred hHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHH
Q 003360 775 SVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVL 816 (826)
Q Consensus 775 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~ 816 (826)
.....--+++.||||||+.|.++|++|++.|..|..-|+.|-
T Consensus 23 ~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~ 64 (65)
T 1gl2_A 23 NIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455556679999999999999999999999999999998764
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.79 E-value=0.13 Score=52.47 Aligned_cols=182 Identities=13% Similarity=0.026 Sum_probs=105.8
Q ss_pred CCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceeee
Q 003360 193 SSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLLI 268 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i 268 (826)
+....+.|. ++....+.+ ++.++.++.......... ....... ... .+++++....++.+.+||..... .+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~--~~ 129 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ--RE 129 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE--EE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc--EE
Confidence 345677776 344444455 778888876554433221 1222211 222 34677777789999999994433 23
Q ss_pred eecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec---
Q 003360 269 LSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI--- 345 (826)
Q Consensus 269 ~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~--- 345 (826)
.++.+. .++ ..+++++..|+++..++.|.++|..+..... . +.....
T Consensus 130 ~ti~~~------~eG-----wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~-----~--------------I~V~~~g~~ 179 (268)
T 3nok_A 130 RTTRYS------GEG-----WGLCYWNGKLVRSDGGTMLTFHEPDGFALVG-----A--------------VQVKLRGQP 179 (268)
T ss_dssp EEEECS------SCC-----CCEEEETTEEEEECSSSEEEEECTTTCCEEE-----E--------------EECEETTEE
T ss_pred EEEeCC------Cce-----eEEecCCCEEEEECCCCEEEEEcCCCCeEEE-----E--------------EEeCCCCcc
Confidence 334421 121 2333567888888888899999987543211 0 111111
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc----------CCCCCeeEEEEeecccCCCCCcEEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS----------DISSGIVSLQFETCSLQGFEKNFLVIA 415 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~----------~~~~~V~sl~f~~~~~~~~d~~~l~sg 415 (826)
-..++.|.|. +|...|....+..|.++|..+++++....... ....-...|+|.+ ++..|++.
T Consensus 180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp------~~~rlfVT 252 (268)
T 3nok_A 180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP------GSGRIFMT 252 (268)
T ss_dssp CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT------TTCCEEEE
T ss_pred cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC------CCCEEEEe
Confidence 1235667777 67555555568899999999999986655421 1223567799988 35555554
Q ss_pred E
Q 003360 416 T 416 (826)
Q Consensus 416 s 416 (826)
+
T Consensus 253 G 253 (268)
T 3nok_A 253 G 253 (268)
T ss_dssp E
T ss_pred C
Confidence 4
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.79 E-value=0.7 Score=55.18 Aligned_cols=205 Identities=12% Similarity=0.154 Sum_probs=115.6
Q ss_pred CCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCceeecc---cccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 192 DSSITAMKLITGNSFILSSA-DEDYSLLAKSVPPLLDFE---TKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~~~~~~---~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
...|.++....++. ++.|. ++-+..|+........+. ......|.+ ..+++++.+ |+.++-+..+|......
T Consensus 362 ~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 362 NKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF 439 (781)
T ss_dssp SSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE
T ss_pred CcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE
Confidence 35688887776665 45555 555666654432222221 112344666 445666544 77777788898854442
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
.. +... ......|.++...+++.+.+ |+..| |..|+..++.... +...... . ..
T Consensus 440 ~~---~~~~-----~~~~~~v~~i~~d~~g~lwi-gt~~G-l~~~~~~~~~~~~------~~~~~~~-~---------~~ 493 (781)
T 3v9f_A 440 QI---IELE-----KNELLDVRVFYEDKNKKIWI-GTHAG-VFVIDLASKKVIH------HYDTSNS-Q---------LL 493 (781)
T ss_dssp EE---CCST-----TTCCCCEEEEEECTTSEEEE-EETTE-EEEEESSSSSCCE------EECTTTS-S---------CS
T ss_pred EE---eccC-----CCCCCeEEEEEECCCCCEEE-EECCc-eEEEeCCCCeEEe------cccCccc-c---------cc
Confidence 11 1100 12346799999888776444 55544 7788876443210 0000000 0 01
Q ss_pred cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
...|.++...++|. |-+|+.++-|..||..+.+...-.....-....|.++.... ...|+.|+.+|.|..||
T Consensus 494 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-------~g~lWi~T~~Glv~~~d 565 (781)
T 3v9f_A 494 ENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSS-------KGQMWLATGEGLVCFPS 565 (781)
T ss_dssp CSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECT-------TSCEEEEETTEEEEESC
T ss_pred cceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECC-------CCCEEEEECCCceEEEC
Confidence 35689999999886 55566643467899877765421111111234677777665 44578888877658999
Q ss_pred CCCCceE
Q 003360 426 SDNGNML 432 (826)
Q Consensus 426 ~~tg~~i 432 (826)
..++++.
T Consensus 566 ~~~~~~~ 572 (781)
T 3v9f_A 566 ARNFDYQ 572 (781)
T ss_dssp TTTCCCE
T ss_pred CCCCcEE
Confidence 8877643
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.66 E-value=0.14 Score=51.73 Aligned_cols=154 Identities=10% Similarity=0.099 Sum_probs=92.9
Q ss_pred eCCCCCEEEEEECCC--cEEEEeC-CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCC
Q 003360 239 HSKVKNLFITGHSDG--AINFWDV-SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 315 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DG--tVriWD~-s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~ 315 (826)
|+. +.++.+.+.+| +|+.+|+ +++.... ..+. .+ ..--.+++.. +++......++.+.+||..+.
T Consensus 28 ~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~-~~l~--------~~-~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 28 YLR-GHLYESTGETGRSSVRKVDLETGRILQR-AEVP--------PP-YFGAGIVAWR-DRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp EET-TEEEEEECCTTSCEEEEEETTTCCEEEE-EECC--------TT-CCEEEEEEET-TEEEEEESSSSEEEEEETTTT
T ss_pred EEC-CEEEEECCCCCCceEEEEECCCCCEEEE-EeCC--------CC-cceeEEEEeC-CEEEEEEeeCCEEEEEECCcC
Confidence 554 66777777765 9999999 4444211 1111 01 1112233332 344555667889999998743
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCC---C
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDIS---S 392 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~---~ 392 (826)
.. +......+.=..| ++++..|.++..++.|.++|..+.+++.+..... +. .
T Consensus 96 ~~----------------------~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~~ 150 (243)
T 3mbr_X 96 TP----------------------RARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPLD 150 (243)
T ss_dssp EE----------------------EEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECC
T ss_pred cE----------------------EEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcccc
Confidence 22 2222222222233 3567777777789999999999998886555422 12 2
Q ss_pred CeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECCCCceEEeeec
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
.+..+.|.. +. |++.. .+..|.++|..+|+.+..+..
T Consensus 151 ~lNeLe~~~-------G~-lyanvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 151 NLNELEWVN-------GE-LLANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp CEEEEEEET-------TE-EEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred cceeeEEeC-------CE-EEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 334455542 54 55555 577999999999999988753
No 265
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.59 E-value=0.039 Score=62.79 Aligned_cols=203 Identities=15% Similarity=0.111 Sum_probs=118.3
Q ss_pred eeCCCeEEEec--CCcEEEeccCCCceee-cccccCCccee--e-C-CCCCEEEEEE------------------CCCcE
Q 003360 201 ITGNSFILSSA--DEDYSLLAKSVPPLLD-FETKLKDGSQS--H-S-KVKNLFITGH------------------SDGAI 255 (826)
Q Consensus 201 s~~~~~l~~~~--d~~i~~w~~~~~~~~~-~~~~h~g~V~~--~-s-~~~~~l~Tgs------------------~DGtV 255 (826)
.+||++++... +..|.+.+...-.... +..+...+... + + |+++++.+++ .++.|
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 55889888865 4456666554433221 11222233333 3 4 8889888885 34678
Q ss_pred EEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC---------------cEEEEEeCCCC----
Q 003360 256 NFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG---------------MVRIFKLKYEP---- 316 (826)
Q Consensus 256 riWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg---------------~V~iwd~~~~~---- 316 (826)
.++|..... .+.++. ..+ .-..++++|+++++++.+.+. .|.++|+.+..
T Consensus 178 tvID~~t~~--v~~qI~--------Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 178 TAVDADKWE--VAWQVL--------VSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp EEEETTTTE--EEEEEE--------ESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEECCCCe--EEEEEE--------eCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 889985433 223333 111 234577899999999988663 46677664321
Q ss_pred ---CccccceEEEeecC-CCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCe------------
Q 003360 317 ---HAIENSFLSFTGSK-KGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPT------------ 379 (826)
Q Consensus 317 ---~~~~~~~~~i~~s~-~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~------------ 379 (826)
...-+.+.-+.... .+... +..........++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~----~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~ 322 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLF----TRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 322 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSS----EEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred CCCeeEECcEEEEeCcccCCcee----EEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence 00001122121111 01110 12222234567899999999877665 57899999998653
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
+.. .. ........++|++ ++....+.-.|+.|.+||..+
T Consensus 323 v~~--~v--~vG~gP~h~aF~~------dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 323 VVA--EP--ELGLGPLHTAFDG------RGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEE--CC--BCCSCEEEEEECT------TSEEEEEETTTTEEEEEEHHH
T ss_pred eEE--Ec--CCCCCcceEEECC------CCeEEEEEecCCcEEEEEhhH
Confidence 221 11 2345678899999 584334555789999999886
No 266
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.54 E-value=1.4 Score=50.63 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=25.3
Q ss_pred cCCC---EEEEEecCCeEEEEecCCCeeEEeeec
Q 003360 356 RNSQ---HLAVGSDQGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 356 ~~g~---~lasGs~dG~V~vwD~~~~~~l~~~~~ 386 (826)
.+|+ .++.++.+|.++++|..+++++.....
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 4673 577899999999999999999876554
No 267
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.52 E-value=0.7 Score=46.97 Aligned_cols=217 Identities=9% Similarity=0.087 Sum_probs=122.6
Q ss_pred ecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccC--Cccee--eCCCCCEEEEEECCCcEEEEeCC
Q 003360 188 MPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLK--DGSQS--HSKVKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 188 l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~--g~V~~--~s~~~~~l~Tgs~DGtVriWD~s 261 (826)
++.....+..++|.|++..|++.. ++.|...+........+ +.. +.... +.+++.++++.-.++.+.++++.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i--~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTI--PLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEE--ECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEE--ecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 456667899999999988888766 44444445443222222 111 11222 55777776765567888888873
Q ss_pred -CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 262 -CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 262 -~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
......+...... .. ..........|+|+|.+..|.++.+.....||.+..-.. ...+.-+. .+. +
T Consensus 100 ~~~~i~~~~~~~~~-~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~--~~~l~i~~-~~~--------~ 166 (255)
T 3qqz_A 100 PNSEVKILKKIKIP-LQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS--SNELHISK-DKA--------L 166 (255)
T ss_dssp TTCCEEEEEEEECC-CS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC--SSCCEEEE-CHH--------H
T ss_pred CCCeeeeeeeeccc-cc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc--CCceeeec-chh--------h
Confidence 2221111212110 00 012335678999999998888888777778888762111 00111000 000 0
Q ss_pred EEeeccCCeEEEEEccCC-CEEEEEecCCeEEEEecCCCeeEEeeecccCC------CCCeeEEEEeecccCCCCCcEEE
Q 003360 341 KVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI------SSGIVSLQFETCSLQGFEKNFLV 413 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g-~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~------~~~V~sl~f~~~~~~~~d~~~l~ 413 (826)
.....-..+.+|+++|.. .+++....+..+.++|.. +.++....+..+. -...-.|+|.+ +++ |+
T Consensus 167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~------~G~-ly 238 (255)
T 3qqz_A 167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA------SGN-IY 238 (255)
T ss_dssp HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT------TCC-EE
T ss_pred ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC------CCC-EE
Confidence 000012357899999865 455666677889999976 4466545544322 13567788988 465 66
Q ss_pred EEECCCcEEEEECC
Q 003360 414 IATKDSSVLVLDSD 427 (826)
Q Consensus 414 sgs~Dg~V~iwd~~ 427 (826)
+.+.-..++.+...
T Consensus 239 IvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 239 IVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEETTTEEEEEEC-
T ss_pred EEcCCceEEEEEec
Confidence 66776777777654
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.51 E-value=0.59 Score=53.81 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=44.9
Q ss_pred CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 367 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 367 dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
+|.|..||+.+++++.+..... ++..-.... .+.++++|+.|+.++.||.++|+.+-.+..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~t------agglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL----PLWAGVLAT------AGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS----CCCSCCEEE------TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEECCCCCEEEEecCCC----CCcccceEe------CCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 6889999999999997665321 111111111 267888999999999999999999988754
No 269
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.49 E-value=0.27 Score=49.50 Aligned_cols=184 Identities=11% Similarity=0.049 Sum_probs=105.4
Q ss_pred CCEEEEEEeeCCCeEEEec-C--CcEEEeccCCCceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCcee
Q 003360 193 SSITAMKLITGNSFILSSA-D--EDYSLLAKSVPPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFL 266 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~-d--~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~ 266 (826)
.....+.|+. +....+.+ + ..++.++......... ......... ... .+++++..-.++.+.+||.....
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~-~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~-- 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQR-AEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT-- 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEE-EECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE--
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEE-EeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc--
Confidence 4566788775 44444444 3 3788887665444332 111112111 222 34566666788999999994433
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec-
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI- 345 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~- 345 (826)
.+.++.+. .+ ...+++++..|+++..++.|.++|..+..... . +.....
T Consensus 97 ~~~ti~~~------~~-----Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~-----~--------------I~V~~~g 146 (243)
T 3mbr_X 97 PRARFRYP------GE-----GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVG-----S--------------IKVTAGG 146 (243)
T ss_dssp EEEEEECS------SC-----CCEEEECSSCEEEECSSSEEEEECTTTCCEEE-----E--------------EECEETT
T ss_pred EEEEEeCC------CC-----ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEE-----E--------------EEEccCC
Confidence 23334422 11 12334677777777778899999987443211 0 111111
Q ss_pred --cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeeccc----------CCCCCeeEEEEeecccCCCCCcEEE
Q 003360 346 --NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS----------DISSGIVSLQFETCSLQGFEKNFLV 413 (826)
Q Consensus 346 --~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~----------~~~~~V~sl~f~~~~~~~~d~~~l~ 413 (826)
-..++-|.+. +|...|....+..|.++|..+++++-...+.. ....-...|+|++ ++..|+
T Consensus 147 ~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~------~~~~lf 219 (243)
T 3mbr_X 147 RPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA------EHDRLF 219 (243)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET------TTTEEE
T ss_pred cccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC------CCCEEE
Confidence 1235666765 66555444467899999999999986655431 1123457799998 466666
Q ss_pred EEEC
Q 003360 414 IATK 417 (826)
Q Consensus 414 sgs~ 417 (826)
+.+.
T Consensus 220 VTGK 223 (243)
T 3mbr_X 220 VTGK 223 (243)
T ss_dssp EEET
T ss_pred EECC
Confidence 6553
No 270
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.49 E-value=2.3 Score=50.85 Aligned_cols=242 Identities=11% Similarity=0.173 Sum_probs=135.1
Q ss_pred ceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec-CCcEEEeccCCCc
Q 003360 146 DSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA-DEDYSLLAKSVPP 224 (826)
Q Consensus 146 ~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~-d~~i~~w~~~~~~ 224 (826)
..+.+++..|-|..|+...-. +.... . . +. . -......|.++....++. ++.|. ++-+..|+.....
T Consensus 321 g~lWigt~~~Gl~~~~~~~~~--~~~~~-~---~-~~--~--~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~ 388 (795)
T 4a2l_A 321 GGMWLGTYFGGLNYYHPIRNR--FKNIR-N---I-PY--K--NSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQR 388 (795)
T ss_dssp SCEEEEESSSCEEEECGGGGS--SEEEC-C---C-TT--S--SSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCC
T ss_pred cCEEEEECCCCeEEeCCCccc--ceEEc-C---C-CC--C--CCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCc
Confidence 346777777788888765410 00000 0 0 00 0 012345688887777665 56666 5567777655444
Q ss_pred eeecccc--------cCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC
Q 003360 225 LLDFETK--------LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT 294 (826)
Q Consensus 225 ~~~~~~~--------h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~ 294 (826)
+..+... ....|.+ ..+++++|..|+.++-|.+||........ +... .. ......|.++...++
T Consensus 389 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~---~~~~-~~--~l~~~~v~~i~~d~~ 462 (795)
T 4a2l_A 389 FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN---FNQR-NS--QLVNENVYAILPDGE 462 (795)
T ss_dssp EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE---ECTT-TS--CCSCSCEEEEEECSS
T ss_pred EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE---eecC-CC--CcCCCeeEEEEECCC
Confidence 4333111 1244556 45677756778887789999985544322 1110 00 133468999999888
Q ss_pred CCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEe
Q 003360 295 SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD 374 (826)
Q Consensus 295 ~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD 374 (826)
+.+.+.. .+| |.+|+..++.. ..+....+.. ......|.++...++|. +-+|+.+| |..||
T Consensus 463 g~lwigt-~~G-l~~~~~~~~~~------~~~~~~~~~~---------~~~~~~i~~i~~d~~g~-lWigt~~G-l~~~~ 523 (795)
T 4a2l_A 463 GNLWLGT-LSA-LVRFNPEQRSF------TTIEKEKDGT---------PVVSKQITTLFRDSHKR-LWIGGEEG-LSVFK 523 (795)
T ss_dssp SCEEEEE-SSC-EEEEETTTTEE------EECCBCTTCC---------BCCCCCEEEEEECTTCC-EEEEESSC-EEEEE
T ss_pred CCEEEEe-cCc-eeEEeCCCCeE------EEcccccccc---------ccCCceEEEEEECCCCC-EEEEeCCc-eEEEe
Confidence 8765544 454 77788764321 1000000000 01135689999999987 44455554 78899
Q ss_pred cCCCeeEEee--ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceE
Q 003360 375 TEGPTVLYQK--HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 432 (826)
Q Consensus 375 ~~~~~~l~~~--~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i 432 (826)
..+....+.. .........|.++.... ...|+.|+.. -|..||..++++.
T Consensus 524 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-------~g~lWigT~~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 524 QEGLDIQKASILPVSNVTKLFTNCIYEAS-------NGIIWVGTRE-GFYCFNEKDKQIK 575 (795)
T ss_dssp EETTEEEECCCSCSCGGGGSCEEEEEECT-------TSCEEEEESS-CEEEEETTTTEEE
T ss_pred CCCCeEEEecCCCCCCCCCCeeEEEEECC-------CCCEEEEeCC-CceeECCCCCcEE
Confidence 8877652110 00112334677777765 3457777776 5889998876544
No 271
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.47 E-value=0.89 Score=46.03 Aligned_cols=173 Identities=11% Similarity=-0.025 Sum_probs=95.5
Q ss_pred CCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccccCCccee--eCCC-CCEEEEEEC--CCcEEEEeCCCCce
Q 003360 193 SSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKV-KNLFITGHS--DGAINFWDVSCPLF 265 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~-~~~l~Tgs~--DGtVriWD~s~~~~ 265 (826)
.....+++.+++..++.+. .+.|.+++........+.......... ++++ +.++++... .+.|..++..+...
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~ 158 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence 4567889998776666544 566777654432222221110011122 7885 455555543 47888888855442
Q ss_pred eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 266 LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 266 ~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
..+.. ........++++|++..|.++. ..+.|.++++..... .....
T Consensus 159 ~~~~~----------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~----------------------~~~~~ 206 (267)
T 1npe_A 159 RILAQ----------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR----------------------RKVLE 206 (267)
T ss_dssp EEEEC----------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE----------------------EEEEE
T ss_pred EEEEE----------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce----------------------EEEec
Confidence 11110 1113578999999877665554 457899988862110 00111
Q ss_pred ccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEee
Q 003360 345 INGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 401 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~ 401 (826)
.......|+.. +..|.++. ..+.|.++|..+++.+..... +.......+++.|
T Consensus 207 ~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~--g~~~~p~gi~~~~ 260 (267)
T 1npe_A 207 GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP--HKQTRLYGITIAL 260 (267)
T ss_dssp CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC--SSCCCCCCEEEEC
T ss_pred CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc--ccccccceeeecC
Confidence 11224566654 34455544 568999999999988744432 2222355566666
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.37 E-value=0.41 Score=56.04 Aligned_cols=116 Identities=9% Similarity=0.090 Sum_probs=70.7
Q ss_pred eCC-CCCEEEEEECCC-----------cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-CC
Q 003360 239 HSK-VKNLFITGHSDG-----------AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-SG 305 (826)
Q Consensus 239 ~s~-~~~~l~Tgs~DG-----------tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-dg 305 (826)
+.+ ++++++.|+.+. .+.+||........+..+. ..+.....++++.+++.+++.|+. +.
T Consensus 193 v~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-------~~~~~~~~~~~~~~~g~lyv~GG~~~~ 265 (656)
T 1k3i_A 193 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-------TKHDMFCPGISMDGNGQIVVTGGNDAK 265 (656)
T ss_dssp EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-------CSCCCSSCEEEECTTSCEEEECSSSTT
T ss_pred EEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-------CCCCCccccccCCCCCCEEEeCCCCCC
Confidence 555 888999887653 5889998555532222221 112223345777899999999985 45
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cC-----CeEEEEecCCCe
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQ-----GYVYLLDTEGPT 379 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~d-----G~V~vwD~~~~~ 379 (826)
.+.+||..++... . +........-.+++..++|+++++|+ .+ ..+.+||..+.+
T Consensus 266 ~v~~yd~~t~~W~------~--------------~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 266 KTSLYDSSSDSWI------P--------------GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp CEEEEEGGGTEEE------E--------------CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ceEEecCcCCcee------E--------------CCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 8999998754221 0 00000011123345567888999988 44 468999998876
Q ss_pred eE
Q 003360 380 VL 381 (826)
Q Consensus 380 ~l 381 (826)
-.
T Consensus 326 W~ 327 (656)
T 1k3i_A 326 WT 327 (656)
T ss_dssp EE
T ss_pred ce
Confidence 44
No 273
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.36 E-value=0.83 Score=51.99 Aligned_cols=132 Identities=9% Similarity=-0.001 Sum_probs=77.5
Q ss_pred CeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 285 PLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
...++.++||++++++++ .+.+|.+||+.+........+ ... ... +...........++|+++|...++
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l-----~~~-~~v----~~~v~vG~gP~h~aF~~dG~aY~t 347 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA-----DPR-SAV----VAEPELGLGPLHTAFDGRGNAYTS 347 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-----CGG-GGE----EECCBCCSCEEEEEECTTSEEEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc-----Ccc-cce----EEEcCCCCCcceEEECCCCeEEEE
Confidence 456899999999877665 578999999984311000000 000 000 222233445788999999954556
Q ss_pred EecCCeEEEEecCC----------CeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC---CCc----------
Q 003360 364 GSDQGYVYLLDTEG----------PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK---DSS---------- 420 (826)
Q Consensus 364 Gs~dG~V~vwD~~~----------~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~---Dg~---------- 420 (826)
...|++|.+||+.. ..++.+... |- .+-...++.......|+.+|+++.. |..
T Consensus 348 ~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV---~y-qpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~ 423 (595)
T 1fwx_A 348 LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV---HY-QPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPEN 423 (595)
T ss_dssp ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC---SS-CEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEE
T ss_pred EecCCcEEEEEhhHhhhhhcccccceeEEEeec---cc-ccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCc
Confidence 67899999999976 445533332 11 1111222222223347999998865 332
Q ss_pred EEEEECCCCc
Q 003360 421 VLVLDSDNGN 430 (826)
Q Consensus 421 V~iwd~~tg~ 430 (826)
-.++|+.+++
T Consensus 424 ~ql~dis~~~ 433 (595)
T 1fwx_A 424 DQLIDISGDK 433 (595)
T ss_dssp EEEEECSSSS
T ss_pred ceEEEcCCCc
Confidence 1788887665
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.35 E-value=1.5 Score=47.36 Aligned_cols=203 Identities=7% Similarity=-0.077 Sum_probs=115.5
Q ss_pred CCEEEEEEeeCCCeEEEe-c-CCcEEEeccCCCceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceee
Q 003360 193 SSITAMKLITGNSFILSS-A-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~-~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
..+..++|.+....|+.+ . .+.|..++........+.......... +.+ .++++++-...+.|.+.++.+.....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 346788898765555544 3 667776754433322220100111111 554 56677777778888888885544211
Q ss_pred eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS--GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d--g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
+. ...-.....|+++|.+..|...... +.|..+++..... . ......
T Consensus 196 ---l~-------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----------------~-----~~~~~~ 244 (386)
T 3v65_B 196 ---LL-------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----------------R-----IIADTH 244 (386)
T ss_dssp ---EE-------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----------------E-----EEECSS
T ss_pred ---ee-------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc----------------E-----EEEECC
Confidence 11 0112467899999987776666543 4566666542211 0 000011
Q ss_pred cCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
-.....|+|++++..|..+. ..+.|..+|+.......... ........+++. ++.++++-...+.|..+
T Consensus 245 ~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~---~~~~~P~giav~-------~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 245 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---QGLPHPFAITVF-------EDSLYWTDWHTKSINSA 314 (386)
T ss_dssp CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC---SSCSSEEEEEEE-------TTEEEEEETTTTEEEEE
T ss_pred CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE---CCCCCceEEEEE-------CCEEEEeeCCCCeEEEE
Confidence 22368899998766666554 56789999986543221111 122345566663 25666666677889999
Q ss_pred ECCCCceEEeee
Q 003360 425 DSDNGNMLSTNL 436 (826)
Q Consensus 425 d~~tg~~i~~~~ 436 (826)
+..+|+.+..+.
T Consensus 315 ~~~~G~~~~~i~ 326 (386)
T 3v65_B 315 NKFTGKNQEIIR 326 (386)
T ss_dssp ETTTCCSCEEEE
T ss_pred ECCCCcceEEEc
Confidence 977788776653
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.22 E-value=1.5 Score=46.09 Aligned_cols=200 Identities=12% Similarity=-0.001 Sum_probs=114.2
Q ss_pred CEEEEEEeeCCCeEE-Eec-CCcEEEeccCCCce--eecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCcee
Q 003360 194 SITAMKLITGNSFIL-SSA-DEDYSLLAKSVPPL--LDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFL 266 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~-~~~-d~~i~~w~~~~~~~--~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~ 266 (826)
.+..+.|.+....++ +-. .+.|..+....... .....+. ..... +.+ .++++++-...+.|.+++..+....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l-~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL-LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC-SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC-CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 456788888655444 444 66676664433211 1111111 11112 553 5667788778889999998655422
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEee
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ--SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 344 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~--dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 344 (826)
. +. .........|++.|.+..|..+.. .+.|..+++..... .. +. ..
T Consensus 115 ~---l~-------~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----------------~~----~~-~~ 163 (318)
T 3sov_A 115 V---LF-------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----------------FI----II-NS 163 (318)
T ss_dssp E---EE-------CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC----------------EE----EE-CS
T ss_pred E---EE-------eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe----------------EE----EE-EC
Confidence 2 11 011246689999998777776653 45666666542111 00 10 01
Q ss_pred ccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 345 INGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 345 ~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.-.....|++++++..|..+. ..+.|..+|+.+....... .........+++.. +.++++-...+.|..
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~---~~~~~~P~glav~~-------~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGSLPHPFALTLFE-------DILYWTDWSTHSILA 233 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---CSCCSCEEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe---cCCCCCceEEEEeC-------CEEEEEecCCCeEEE
Confidence 112358899999776666654 5678999998654322111 12233445566543 566677667789999
Q ss_pred EECCCCceEEee
Q 003360 424 LDSDNGNMLSTN 435 (826)
Q Consensus 424 wd~~tg~~i~~~ 435 (826)
++..+|+.+..+
T Consensus 234 ~~~~~G~~~~~i 245 (318)
T 3sov_A 234 CNKYTGEGLREI 245 (318)
T ss_dssp EETTTCCSCEEE
T ss_pred EECCCCCceEEE
Confidence 999888876654
No 276
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.17 E-value=3.2 Score=49.34 Aligned_cols=217 Identities=13% Similarity=0.164 Sum_probs=117.0
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccc-------cCCccee--eCCCCCEEEEEECCCcEEEEeCCCC
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETK-------LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~-------h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
..|.++....++.. +.+..+-+..|+.....+..+... ....|.+ ..+++. |..|+..+-|.++|....
T Consensus 211 ~~i~~i~~d~~g~l-wigt~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 211 NDVRCIYKDTNGNI-WIGTSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQN 288 (781)
T ss_dssp SSEEEEEECTTCCE-EEEETTEEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC
T ss_pred CceeEEEEcCCCCE-EEEeCCcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCC
Confidence 46888877666654 445433566666543333333111 1234555 344554 556777566888998544
Q ss_pred ceeeeeeccc----ccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEE
Q 003360 264 LFLLILSLKQ----QSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 339 (826)
Q Consensus 264 ~~~~i~~l~~----~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 339 (826)
.......... .....-......|.+|...+++. |-+|+.++-|..|+...... ..+...+...
T Consensus 289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~------~~~~~~~~~~------ 355 (781)
T 3v9f_A 289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTF------HTWSYSPTQM------ 355 (781)
T ss_dssp ---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSC------EEEC----CC------
T ss_pred eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcc------eeeccCcccc------
Confidence 4211111000 00001123446899999998876 55577666688888764322 1110000000
Q ss_pred EEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 340 VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
.........|.++...++|. |-+|+.++-|..||..++...............|.++.... ...|++|+.++
T Consensus 356 ~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-------~g~lWigt~~~ 427 (781)
T 3v9f_A 356 NESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-------EGNLWFGTYLG 427 (781)
T ss_dssp CSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-------TSCEEEEETTE
T ss_pred ccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-------CCCEEEEeccC
Confidence 00011235699999988886 66788666688999876543311110112345677777664 45688899888
Q ss_pred cEEEEECCCCceE
Q 003360 420 SVLVLDSDNGNML 432 (826)
Q Consensus 420 ~V~iwd~~tg~~i 432 (826)
-|..++..++++.
T Consensus 428 Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 428 NISYYNTRLKKFQ 440 (781)
T ss_dssp EEEEECSSSCEEE
T ss_pred CEEEEcCCCCcEE
Confidence 8999999877654
No 277
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.15 E-value=0.38 Score=56.34 Aligned_cols=110 Identities=13% Similarity=0.038 Sum_probs=63.7
Q ss_pred EEEEee-CCCeEEEec-CC-----------cEEEeccCCCc---eeecccccCCccee--eCCCCCEEEEEEC-CCcEEE
Q 003360 197 AMKLIT-GNSFILSSA-DE-----------DYSLLAKSVPP---LLDFETKLKDGSQS--HSKVKNLFITGHS-DGAINF 257 (826)
Q Consensus 197 ~~~fs~-~~~~l~~~~-d~-----------~i~~w~~~~~~---~~~~~~~h~g~V~~--~s~~~~~l~Tgs~-DGtVri 257 (826)
.+++.+ +++.++.|+ +. .+.+|+..... +..+..++.....+ +..++++++.|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 455666 777777765 22 35666543322 11221222222212 6688999999984 568999
Q ss_pred EeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CC-----CcEEEEEeCCC
Q 003360 258 WDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QS-----GMVRIFKLKYE 315 (826)
Q Consensus 258 WD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~d-----g~V~iwd~~~~ 315 (826)
||........+..+. ... .-.++...+++++++.|+ .+ ..+.+||..++
T Consensus 270 yd~~t~~W~~~~~~~--------~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQ--------VAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCS--------SCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCC--------ccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 998655543321111 111 113455667999999998 44 46889998754
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.03 E-value=2.3 Score=46.30 Aligned_cols=232 Identities=9% Similarity=-0.032 Sum_probs=130.5
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCC-
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVP- 223 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~- 223 (826)
.+++.++...|..+|...- . +.. +......+..++|.+....|..+. .+.|..+.....
T Consensus 84 ~~ll~~~~~~I~~i~l~~~----------------~-~~~-~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~ 145 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRS----------------E-YTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 145 (400)
T ss_dssp CEEEEEETTEEEEECTTSC----------------S-CEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----
T ss_pred ceeEEeccceeEEEccCCc----------------c-eeE-eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCC
Confidence 3455566677777766540 0 111 122335678899998666555543 566666643321
Q ss_pred ---ceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCE
Q 003360 224 ---PLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 297 (826)
Q Consensus 224 ---~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~ 297 (826)
............... +.+ .++++++-...+.|.+.|+.+.....+.. ........|++.|.+..
T Consensus 146 ~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~----------~~~~~P~~iavdp~~g~ 215 (400)
T 3p5b_L 146 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR----------ENGSKPRAIVVDPVHGF 215 (400)
T ss_dssp --CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE----------CSSCCEEEEEEETTTTE
T ss_pred CCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe----------CCCCCcceEEEecccCe
Confidence 111110101111222 554 56778887888899999986655322111 11235789999997777
Q ss_pred EEEEeC--CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEe
Q 003360 298 LVSGDQ--SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLD 374 (826)
Q Consensus 298 Lasgs~--dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD 374 (826)
|..... .+.|...++..... .. + ....-.....|++++++..|..+. ..+.|..+|
T Consensus 216 ly~td~~~~~~I~~~~~dG~~~----------------~~----~-~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d 274 (400)
T 3p5b_L 216 MYWTDWGTPAKIKKGGLNGVDI----------------YS----L-VTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 274 (400)
T ss_dssp EEEEECSSSCCEEEEETTSCSC----------------EE----E-ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCEEEEEeCCCCcc----------------EE----E-EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEe
Confidence 766653 35676666652211 00 1 001113478899998877777665 467899999
Q ss_pred cCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 375 TEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+.+......... ...-.....++.. .+.++++-...+.|..+|..+|+.+..+
T Consensus 275 ~dG~~~~~~~~~-~~~l~~P~gl~v~-------~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 275 VNGGNRKTILED-EKRLAHPFSLAVF-------EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp TTSCCCEEEEEC-SSTTSSEEEEEEE-------TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCCCccEEEEeC-CCCCCCCEEEEEe-------CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 876443211111 1112234455553 2566677777788999998888877665
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.01 E-value=1.9 Score=45.17 Aligned_cols=204 Identities=9% Similarity=-0.029 Sum_probs=115.1
Q ss_pred CCEEEEEEeeCCCeEEEec--CCcEEEeccCC----CceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCC
Q 003360 193 SSITAMKLITGNSFILSSA--DEDYSLLAKSV----PPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~----~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
.....+.|.+.+..++.+. .+.|..++... ..........-..... +.+ .++++++-..++.|.+.|..+.
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4567888988765555543 56676664432 1111110000011122 554 5667777778889999998665
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS--GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d--g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
....+.. ........++++|.+..|..+... +.|..+++... .. ..
T Consensus 110 ~~~~~~~----------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~------------------~~----~~ 157 (316)
T 1ijq_A 110 KRKTLFR----------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV------------------DI----YS 157 (316)
T ss_dssp SEEEEEE----------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC------------------CE----EE
T ss_pred ceEEEEE----------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC------------------Ce----EE
Confidence 4222111 112367899999977766665543 56666665421 10 00
Q ss_pred Ee-eccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 342 VM-KINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 342 ~~-~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
.. ..-.....|++++++..|..+. ..+.|..+|+.+......... .........+++.. +.++++-...+
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~-~~~~~~P~giav~~-------~~ly~~d~~~~ 229 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVFE-------DKVFWTDIINE 229 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTTTSSEEEEEEET-------TEEEEEETTTT
T ss_pred EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec-CCccCCcEEEEEEC-------CEEEEEECCCC
Confidence 11 1123468899998877776655 567899999975432211111 11123345666632 56666666778
Q ss_pred cEEEEECCCCceEEeee
Q 003360 420 SVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~~ 436 (826)
.|..++..+|+.+..+.
T Consensus 230 ~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEEETTTCCCCEEEE
T ss_pred eEEEEeCCCCcceEEEe
Confidence 99999988888766653
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.91 E-value=1.9 Score=44.67 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=56.8
Q ss_pred eeCCCeEEEec--CCcEEEeccCC-CceeecccccCCccee---eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccc
Q 003360 201 ITGNSFILSSA--DEDYSLLAKSV-PPLLDFETKLKDGSQS---HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQ 274 (826)
Q Consensus 201 s~~~~~l~~~~--d~~i~~w~~~~-~~~~~~~~~h~g~V~~---~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~ 274 (826)
++++..++.+. .+.|..++... ..+.....-.....+. +.++|+++++....+.|.++|..+... .+..+.
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~-~~~~~~-- 251 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTT-IIAQAE-- 251 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEE-EEECGG--
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEE-EEeecc--
Confidence 78888776654 56777775432 1111000000111122 788999988888889999999865431 111111
Q ss_pred cccccccCCCCeEEEEEe---CCCCEEEEEeCCC
Q 003360 275 SEKDFSLSGIPLTALYYD---GTSRVLVSGDQSG 305 (826)
Q Consensus 275 ~~~~~~~h~~~V~~l~fs---p~~~~Lasgs~dg 305 (826)
......++++|. |+++.|.+++..+
T Consensus 252 ------~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 252 ------QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ------GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ------cccCCceEEEEecccCCCCEEEEECCCC
Confidence 122468999998 8888777766544
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.77 E-value=2.6 Score=44.86 Aligned_cols=201 Identities=8% Similarity=-0.059 Sum_probs=115.5
Q ss_pred CCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeec-ccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCcee
Q 003360 193 SSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDF-ETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFL 266 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~-~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~ 266 (826)
..+..++|.+....++.+. .+.|..++........+ ..+.. .... +.+ .++++++-...+.|.+.+..+....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE-SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCC-CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 3467888987666555543 66676665443222222 11111 1112 554 5667788778889999998655421
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-C-CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEe-
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-S-GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM- 343 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-d-g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~- 343 (826)
. +. .........|+++|.+..|..... . +.|..+++..... ....
T Consensus 152 ~---l~-------~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~----------------------~~~~~ 199 (349)
T 3v64_C 152 V---LL-------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----------------------RIIAD 199 (349)
T ss_dssp E---EE-------CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----------------------EESCC
T ss_pred E---EE-------eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc----------------------EEEEE
Confidence 1 11 011245689999997766665544 3 5666666653211 0000
Q ss_pred eccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 344 KINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 344 ~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
..-.....|++++++..|..+. ..+.|..+|+.+........ ........+++. ++.+.++-...+.|.
T Consensus 200 ~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~---~~~~~P~giav~-------~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 200 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---QGLPHPFAITVF-------EDSLYWTDWHTKSIN 269 (349)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSSEEEEEEE-------TTEEEEEETTTTEEE
T ss_pred CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe---CCCCCceEEEEE-------CCEEEEecCCCCeEE
Confidence 0122368899998776666654 46789999987543221111 122345566663 255666666678899
Q ss_pred EEECCCCceEEeee
Q 003360 423 VLDSDNGNMLSTNL 436 (826)
Q Consensus 423 iwd~~tg~~i~~~~ 436 (826)
.++..+|+.+..+.
T Consensus 270 ~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 270 SANKFTGKNQEIIR 283 (349)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEEccCCCccEEec
Confidence 99977787766653
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.37 E-value=0.12 Score=61.59 Aligned_cols=150 Identities=15% Similarity=0.076 Sum_probs=84.7
Q ss_pred eC-CCCCEEEEEEC-CC----cEEEEeCCCC-ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-----Cc
Q 003360 239 HS-KVKNLFITGHS-DG----AINFWDVSCP-LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-----GM 306 (826)
Q Consensus 239 ~s-~~~~~l~Tgs~-DG----tVriWD~s~~-~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-----g~ 306 (826)
|+ |+|++|+-+.. +| +|+++|+.+. .. +.. .+. .....++|+||++.|+....+ ..
T Consensus 181 ~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-----l~~----~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 181 PAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-----IAD----KVS---GTNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp ECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-----CCC----CEE---EECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred ecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-----CCc----ccc---CceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 89 99998775443 33 4999999544 31 110 000 113467899999887777665 24
Q ss_pred EEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec---CCeEEEEecCCC--ee-
Q 003360 307 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD---QGYVYLLDTEGP--TV- 380 (826)
Q Consensus 307 V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~---dG~V~vwD~~~~--~~- 380 (826)
|.++++.++.... .. +-..........+.|||||++|+..+. ...|.++|+.++ ..
T Consensus 249 v~~~~lgt~~~~~--------------~l----v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~ 310 (751)
T 2xe4_A 249 VWRHVMGKLQSED--------------VC----LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT 310 (751)
T ss_dssp EEEEETTSCGGGC--------------EE----EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred EEEEECCCCchhc--------------EE----EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce
Confidence 6666665332110 00 111112234577899999999887663 346888998775 22
Q ss_pred -EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEEC-C----CcEEEEECCC
Q 003360 381 -LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK-D----SSVLVLDSDN 428 (826)
Q Consensus 381 -l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~-D----g~V~iwd~~t 428 (826)
. .+.........++.|.. +..|+..+. + ..|..+|..+
T Consensus 311 ~~---~l~~~~~~~~~s~~~~~-------g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 311 LE---IVRPREKGVRYDVQMHG-------TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EE---ESSCCCTTCCEEEEEET-------TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred eE---EeecCCCCceEEEeeee-------CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 1 11123344555555443 555554443 3 2677777764
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.22 E-value=0.81 Score=54.45 Aligned_cols=110 Identities=11% Similarity=0.078 Sum_probs=64.3
Q ss_pred CEEEEEEe-eCCCeEEEec--CC----cEEEeccCCC-ceeecccccCCccee--eCCCCCEEEEEECC-----CcEEEE
Q 003360 194 SITAMKLI-TGNSFILSSA--DE----DYSLLAKSVP-PLLDFETKLKDGSQS--HSKVKNLFITGHSD-----GAINFW 258 (826)
Q Consensus 194 ~Vt~~~fs-~~~~~l~~~~--d~----~i~~w~~~~~-~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~D-----GtVriW 258 (826)
.+...+|| |||+.++.+. ++ .|.+++.... ..... ...+.... |+|+++.|+....| ..|.+|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 57788999 9999988654 22 2666655443 32111 11111222 99999877776665 257777
Q ss_pred eCCCCce--eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEeCC
Q 003360 259 DVSCPLF--LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---SGMVRIFKLKY 314 (826)
Q Consensus 259 D~s~~~~--~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---dg~V~iwd~~~ 314 (826)
++.+... .+++.- ........+.|+||+++|+..+. ...|.++|+.+
T Consensus 253 ~lgt~~~~~~lv~~~---------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEE---------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp ETTSCGGGCEEEEEC---------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred ECCCCchhcEEEEec---------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 7744321 111111 11234567899999998886653 33577777764
No 284
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.20 E-value=3.7 Score=43.07 Aligned_cols=197 Identities=10% Similarity=0.032 Sum_probs=95.9
Q ss_pred CCCEEEEEEeeCCCeEEEecCCcEEEe-ccCCCceeec-ccccCCccee--eCCCCCEEEEEECCCcE-EEEeCCCCcee
Q 003360 192 DSSITAMKLITGNSFILSSADEDYSLL-AKSVPPLLDF-ETKLKDGSQS--HSKVKNLFITGHSDGAI-NFWDVSCPLFL 266 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~d~~i~~w-~~~~~~~~~~-~~~h~g~V~~--~s~~~~~l~Tgs~DGtV-riWD~s~~~~~ 266 (826)
...+..+.|.+ +...+.+..+.+..- +....+.... ...+.+.+.. +.+++.+++++ .+|.| +-+| .+....
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D-gG~tW~ 155 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD-SGKNWQ 155 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS-TTSSEE
T ss_pred CccEEEEEecC-CeEEEEECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC-CCCCCE
Confidence 34577888865 444343436543332 2222232211 1122334444 44556666555 45654 3233 233332
Q ss_pred eeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeecc
Q 003360 267 LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN 346 (826)
Q Consensus 267 ~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~ 346 (826)
.+ . ......+..+.+.|++.+++++...+..+-+|-. +.... .......
T Consensus 156 ~~---~-------~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g------------------G~tW~---~~~~~~~ 204 (327)
T 2xbg_A 156 AL---V-------QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG------------------QTAWE---PHNRTTS 204 (327)
T ss_dssp EE---E-------CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT------------------CSSCE---EEECCSS
T ss_pred Ee---e-------cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC------------------CCcee---ECCCCCC
Confidence 21 1 1223478899999998888777544333322210 11100 1111234
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc-cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEE
Q 003360 347 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA-SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 425 (826)
Q Consensus 347 ~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~-~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd 425 (826)
..+..+.+.+++.++ +++.+|.+++.+...+..-...... ......+.++.|.+ ++. +++++.++.| ++.
T Consensus 205 ~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~------~~~-~~~~g~~g~i-~~S 275 (327)
T 2xbg_A 205 RRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT------PNE-VWLAGGAGAL-LCS 275 (327)
T ss_dssp SCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS------SSC-EEEEESTTCE-EEE
T ss_pred CccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC------CCE-EEEEeCCCeE-EEe
Confidence 568889999998755 5556888777643223221111111 01223577888876 244 4555567766 444
Q ss_pred CCCCce
Q 003360 426 SDNGNM 431 (826)
Q Consensus 426 ~~tg~~ 431 (826)
...|+.
T Consensus 276 ~DgG~t 281 (327)
T 2xbg_A 276 QDGGQT 281 (327)
T ss_dssp SSTTSS
T ss_pred CCCCcc
Confidence 454543
No 285
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.09 E-value=3.7 Score=42.45 Aligned_cols=195 Identities=9% Similarity=0.013 Sum_probs=101.9
Q ss_pred CCEEEEEEeeCCCeEEEec--CC-cEEEeccCCCceeec-ccccCCccee---eCCCCCEEEEEECCCcEEEEeCCCCce
Q 003360 193 SSITAMKLITGNSFILSSA--DE-DYSLLAKSVPPLLDF-ETKLKDGSQS---HSKVKNLFITGHSDGAINFWDVSCPLF 265 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~-~i~~w~~~~~~~~~~-~~~h~g~V~~---~s~~~~~l~Tgs~DGtVriWD~s~~~~ 265 (826)
.....+++.++++.+++.. ++ .+..++.....+..+ ..+. ..... ..+.+.++++-..+|.|.++|......
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~ 150 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 150 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence 3578889999998665543 23 233333222222222 1111 11111 344555666666688888888754321
Q ss_pred eeeeeccccc-ccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCC-CCccccceEEEeecCCCCeEEEEEEEE
Q 003360 266 LLILSLKQQS-EKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYE-PHAIENSFLSFTGSKKGNSHIIHSVKV 342 (826)
Q Consensus 266 ~~i~~l~~~~-~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~-~~~~~~~~~~i~~s~~~~~~~~~~~~~ 342 (826)
.. ....... .......-.....| +|+++.|.++. ..+.|..|++... ... .... ...
T Consensus 151 ~v-~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~-------------~~~~----~~~ 210 (306)
T 2p4o_A 151 SI-WLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG-------------EPEI----FVE 210 (306)
T ss_dssp EE-EEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC-------------CCEE----EEE
T ss_pred eE-EEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC-------------ccEE----Eec
Confidence 11 1000000 00000011234555 78887666554 5678999998741 110 0000 100
Q ss_pred eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEe---ecccCCCCCcEEEEEECCC
Q 003360 343 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE---TCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 343 ~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~---~~~~~~~d~~~l~sgs~Dg 419 (826)
......|+++++|.+.++....+.|.++|.. ++........ .....+++++|. + |+..|++++..+
T Consensus 211 ---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-~~~~~p~~~a~~g~~~------d~~~LyVt~~~~ 279 (306)
T 2p4o_A 211 ---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-QGVIGSTAVAFGQTEG------DCTAIYVVTNGG 279 (306)
T ss_dssp ---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-GTCTTEEEEEECCSTT------TTTEEEEEECTT
T ss_pred ---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-cccCCceEEEEecccC------CCCEEEEECCCC
Confidence 1235668999999876666678899999985 5543212221 122457888887 5 567777776544
No 286
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.82 E-value=2.6 Score=48.41 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=25.8
Q ss_pred cCCC---EEEEEecCCeEEEEecCCCeeEEeeec
Q 003360 356 RNSQ---HLAVGSDQGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 356 ~~g~---~lasGs~dG~V~vwD~~~~~~l~~~~~ 386 (826)
.+|+ .|+.++.+|.++++|..+++++.....
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 4664 688899999999999999999976554
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.73 E-value=9.4 Score=45.37 Aligned_cols=204 Identities=9% Similarity=-0.030 Sum_probs=113.1
Q ss_pred CCCEEEEEEeeCCCeEEEe-c-CCcEEEeccCCC----ceeecccccCCccee--eCCC-CCEEEEEECCCcEEEEeCCC
Q 003360 192 DSSITAMKLITGNSFILSS-A-DEDYSLLAKSVP----PLLDFETKLKDGSQS--HSKV-KNLFITGHSDGAINFWDVSC 262 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~-~-d~~i~~w~~~~~----~~~~~~~~h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s~ 262 (826)
...+..++|.+....|+.+ . .+.|..+..... ............... +.+. ++++++-...+.|.+.++.+
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 3456788888855555443 3 566655543221 111110101111122 5444 46888888889999999966
Q ss_pred CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 263 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS--GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 263 ~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d--g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
.....+.. ........|++.|....|...... +.|...++..... .
T Consensus 503 ~~~~~l~~----------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~----------------------~ 550 (791)
T 3m0c_C 503 VKRKTLFR----------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----------------------Y 550 (791)
T ss_dssp SSEEEEEE----------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE----------------------E
T ss_pred CeEEEEEe----------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce----------------------E
Confidence 55322111 112357899999987777766543 5666666652211 1
Q ss_pred EEee-ccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC
Q 003360 341 KVMK-INGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 418 (826)
Q Consensus 341 ~~~~-~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D 418 (826)
.+.. .-.....|++++.+.+|..+. ..+.|..+|+.+......... ...-.....|++.. +.+.++-...
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-~~~l~~P~glav~~-------~~lYwtD~~~ 622 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVFE-------DKVFWTDIIN 622 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTTTSSEEEEEEET-------TEEEEEETTT
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC-CCccCCCCEEEEeC-------CEEEEEECCC
Confidence 1111 123578899998777776664 456899999866543321211 11112234455432 4455555566
Q ss_pred CcEEEEECCCCceEEee
Q 003360 419 SSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 419 g~V~iwd~~tg~~i~~~ 435 (826)
+.|...|..+|+.+..+
T Consensus 623 ~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TEEEEEETTTCCCCEEE
T ss_pred CEEEEEeCCCCcceEEe
Confidence 78999998888766654
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.62 E-value=0.24 Score=58.50 Aligned_cols=202 Identities=11% Similarity=-0.010 Sum_probs=107.0
Q ss_pred CEEEEEEeeCCCeEEEec--CCcEEEeccCC----Cceeec-ccc--cCCcceeeC-CCCCEEEEEECCCcEEEEeCCCC
Q 003360 194 SITAMKLITGNSFILSSA--DEDYSLLAKSV----PPLLDF-ETK--LKDGSQSHS-KVKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~----~~~~~~-~~~--h~g~V~~~s-~~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
.+..++|.+....|+.+. .+.|..++... .....+ ..+ ...++ ++. ..++++++-...+.|.++++.+.
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl-avD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL-AVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE-ECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE-EEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345677888766666554 55666654332 111111 000 01111 144 34567777677889999998655
Q ss_pred ceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE
Q 003360 264 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS--GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 341 (826)
Q Consensus 264 ~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d--g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 341 (826)
....+ +. ........|++.|.+..|+.+... +.|..+++..... . ..
T Consensus 486 ~~~~l--~~--------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~----------------~-----~l 534 (699)
T 1n7d_A 486 KRKTL--FR--------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----------------Y-----SL 534 (699)
T ss_dssp CEEEE--CC--------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC----------------C-----EE
T ss_pred ceEEE--Ee--------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe----------------e-----EE
Confidence 42221 11 011245678889876655554432 5666655542111 0 00
Q ss_pred EeeccCCeEEEEEccCCCEEEEE-ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCc
Q 003360 342 VMKINGSIISLNMNRNSQHLAVG-SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 420 (826)
Q Consensus 342 ~~~~~~~V~~l~~s~~g~~lasG-s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~ 420 (826)
....-.....|+|++++.+|..+ +..+.|.++|+.+......... .........|++.. +.++++....+.
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~-~~~~~~P~glavd~-------~~lywtd~~~~~ 606 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVFE-------DKVFWTDIINEA 606 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCC-SSSCSSCCCCEEET-------TEEEEECSTTTC
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEec-CCcCCCceEeEEEC-------CEEEEEeCCCCe
Confidence 00011235679999876655554 4567899999865432211111 01112223344432 455666666789
Q ss_pred EEEEECCCCceEEee
Q 003360 421 VLVLDSDNGNMLSTN 435 (826)
Q Consensus 421 V~iwd~~tg~~i~~~ 435 (826)
|..++..+|+.+..+
T Consensus 607 V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 607 IFSANRLTGSDVNLL 621 (699)
T ss_dssp EEEEETTTEEEEECC
T ss_pred EEEEEccCCCceEEe
Confidence 999999888877665
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=94.60 E-value=4.7 Score=42.72 Aligned_cols=163 Identities=12% Similarity=0.222 Sum_probs=98.9
Q ss_pred CCcEEEEeC--CCCceeeeeecccccccccccCC-CCeEEEEE--eCCCC--EEEEEeCCCcEEEEEeCCCCCccccceE
Q 003360 252 DGAINFWDV--SCPLFLLILSLKQQSEKDFSLSG-IPLTALYY--DGTSR--VLVSGDQSGMVRIFKLKYEPHAIENSFL 324 (826)
Q Consensus 252 DGtVriWD~--s~~~~~~i~~l~~~~~~~~~~h~-~~V~~l~f--sp~~~--~Lasgs~dg~V~iwd~~~~~~~~~~~~~ 324 (826)
+++|++|++ ....+ ..+... ...+ ... ..+..+++ +|.+. ++.+...+|.+..|++....
T Consensus 98 ~n~l~vf~iDp~~~~l---~~i~~~-~~pv-~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~-------- 164 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTL---QSMTDP-DHPI-ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADK-------- 164 (355)
T ss_dssp CCEEEEEEECTTTCCE---EECSCT-TSCE-ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT--------
T ss_pred CCeEEEEEECCCCCce---eecccc-ccCc-CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCC--------
Confidence 589999966 33332 222110 0000 011 45566777 77543 68888899999999996321
Q ss_pred EEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCCeEEEEecC-----CCeeEEeeecccCCCCCeeEEEE
Q 003360 325 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE-----GPTVLYQKHIASDISSGIVSLQF 399 (826)
Q Consensus 325 ~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~-----~~~~l~~~~~~~~~~~~V~sl~f 399 (826)
++. ..-.-++.....+.+-.+...+...+|.++-++.-|..+|.. +++++.... .......+..|..
T Consensus 165 ------~g~-~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai 236 (355)
T 3amr_A 165 ------NGY-ISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTI 236 (355)
T ss_dssp ------TSC-EEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEE
T ss_pred ------CCc-ccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEE
Confidence 110 000115555667789999999988899999999777666754 344552221 1122335777877
Q ss_pred eecccCCCCCc-EEEEEE-CCCcEEEEECC-CCceEEeeeccC
Q 003360 400 ETCSLQGFEKN-FLVIAT-KDSSVLVLDSD-NGNMLSTNLIHP 439 (826)
Q Consensus 400 ~~~~~~~~d~~-~l~sgs-~Dg~V~iwd~~-tg~~i~~~~~~~ 439 (826)
.+. .++. +|++.+ .+.++.+||.. +.+++..|.+..
T Consensus 237 ~~~----~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig~ 275 (355)
T 3amr_A 237 YYA----ADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRITD 275 (355)
T ss_dssp EEC----GGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECC
T ss_pred Eec----CCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEecC
Confidence 542 0233 677666 57799999997 778888875443
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.36 E-value=10 Score=45.14 Aligned_cols=151 Identities=8% Similarity=-0.074 Sum_probs=87.6
Q ss_pred eCC-CCCEEEEEECCCcEEEEeCCCCce--eeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCC
Q 003360 239 HSK-VKNLFITGHSDGAINFWDVSCPLF--LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKY 314 (826)
Q Consensus 239 ~s~-~~~~l~Tgs~DGtVriWD~s~~~~--~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~ 314 (826)
+++ .+.++++-...+.|+.+++.+... .....+. ........|++.+.++.|+.+ ...+.|.+.++..
T Consensus 431 ~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--------~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 431 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC--------CEEEEC--------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--------cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 655 456777777778888888854210 0000011 112356789999887655554 4567888888763
Q ss_pred CCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec--CCeEEEEecCCCeeEEeeecccCCCC
Q 003360 315 EPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD--QGYVYLLDTEGPTVLYQKHIASDISS 392 (826)
Q Consensus 315 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~--dG~V~vwD~~~~~~l~~~~~~~~~~~ 392 (826)
... . ......-.....|++.|.+.+|..... .+.|.+.++.+....... ...-.
T Consensus 503 ~~~-----------------~----~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv---~~~l~ 558 (791)
T 3m0c_C 503 VKR-----------------K----TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---TENIQ 558 (791)
T ss_dssp SSE-----------------E----EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE---CSSCS
T ss_pred CeE-----------------E----EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE---eCCCC
Confidence 211 0 111111234789999998667766653 268999998655433111 12234
Q ss_pred CeeEEEEeecccCCCCCcEEEEE-ECCCcEEEEECC
Q 003360 393 GIVSLQFETCSLQGFEKNFLVIA-TKDSSVLVLDSD 427 (826)
Q Consensus 393 ~V~sl~f~~~~~~~~d~~~l~sg-s~Dg~V~iwd~~ 427 (826)
....|++.+. ...|+.+ .....|..+++.
T Consensus 559 ~P~GLavD~~------~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 559 WPNGITLDLL------SGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp CEEEEEEETT------TTEEEEEETTTTEEEEEETT
T ss_pred CceEEEEecC------CCeEEEEeCCCCcEEEEecC
Confidence 6778888863 4444444 456688888886
No 291
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.12 E-value=0.6 Score=50.72 Aligned_cols=157 Identities=10% Similarity=0.070 Sum_probs=89.8
Q ss_pred CceEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecc--cCCCEEEEEEeeCCCeEEEecCCcEEEeccC-
Q 003360 145 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPF--LDSSITAMKLITGNSFILSSADEDYSLLAKS- 221 (826)
Q Consensus 145 ~~~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~- 221 (826)
+..+++..+..+|+++..+.+....... . ..+..+.++. ....|..+..+|+|.+|+..++..|.+-..-
T Consensus 23 ~R~~~~~~n~t~i~~a~~n~iR~~~i~~------~-~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~ 95 (452)
T 3pbp_A 23 PRYIFSSQNGTRIVFIQDNIIRWYNVLT------D-SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPW 95 (452)
T ss_dssp CEEEEEETTTTEEEEEETTEEEEEETTT------C-SSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCT
T ss_pred CcEEEEEcCCCEEEEEECCEEEEEECCC------C-CcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecC
Confidence 3445555566677777666543211110 1 2223344442 2235788999999999999887776664211
Q ss_pred -C--C---------ceeecccc-----cCCccee--eCCC---CCEEEEEECCCcEEEEeCCCCceeeeeeccccc-ccc
Q 003360 222 -V--P---------PLLDFETK-----LKDGSQS--HSKV---KNLFITGHSDGAINFWDVSCPLFLLILSLKQQS-EKD 278 (826)
Q Consensus 222 -~--~---------~~~~~~~~-----h~g~V~~--~s~~---~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~-~~~ 278 (826)
. . ....+..+ ....|.. |||. +..|++-..|++||+||++...-.+. .++... ...
T Consensus 96 ~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg 174 (452)
T 3pbp_A 96 GYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFG 174 (452)
T ss_dssp TCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEE
T ss_pred ccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccC
Confidence 0 0 01112111 1344555 8885 45899999999999999943222222 333110 111
Q ss_pred cccCCCCeEEEEEeCCCCEEEEEe--CCCcEEE
Q 003360 279 FSLSGIPLTALYYDGTSRVLVSGD--QSGMVRI 309 (826)
Q Consensus 279 ~~~h~~~V~~l~fsp~~~~Lasgs--~dg~V~i 309 (826)
+......|.+++|.+++-.|.+.+ +.|.|.-
T Consensus 175 ~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 175 LDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp SCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred CCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 222336899999999887777755 7787643
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=94.08 E-value=3.1 Score=43.72 Aligned_cols=158 Identities=14% Similarity=0.206 Sum_probs=98.4
Q ss_pred eCCCCCEEEEEE-CCCcEEEEeCCCCceeeeeecccccccccc--cCC-CCeEEEEE---eCCCCEEEEEeC--------
Q 003360 239 HSKVKNLFITGH-SDGAINFWDVSCPLFLLILSLKQQSEKDFS--LSG-IPLTALYY---DGTSRVLVSGDQ-------- 303 (826)
Q Consensus 239 ~s~~~~~l~Tgs-~DGtVriWD~s~~~~~~i~~l~~~~~~~~~--~h~-~~V~~l~f---sp~~~~Lasgs~-------- 303 (826)
|++.+..+..++ ..|+|..||..+.....+ .+. .+. +.. ..+..|.| .|+++++++...
T Consensus 20 wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~-----~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 20 YDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID-----GASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT-----TTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC-----CccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 666455555555 789999999964432121 121 111 111 24589999 688888876442
Q ss_pred -----CCcEEEEEeC---CCCCccccceEEEeecCCCCeEEEEEEEEee-----------ccCCeEEEEEccCCCEEEEE
Q 003360 304 -----SGMVRIFKLK---YEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-----------INGSIISLNMNRNSQHLAVG 364 (826)
Q Consensus 304 -----dg~V~iwd~~---~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-----------~~~~V~~l~~s~~g~~lasG 364 (826)
+..|..||+. ++... .. +.+.. .......++..++|+..+++
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~-----~~--------------~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~ 154 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPV-----WS--------------VNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF 154 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCS-----EE--------------EESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEE-----EE--------------ecCccccccccccccccccCCceeEECCCCCEEEeC
Confidence 5678889987 33221 00 11100 01237889999999998989
Q ss_pred ecC-CeEEEEecCCCeeE-Eeeecc-cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 365 SDQ-GYVYLLDTEGPTVL-YQKHIA-SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 365 s~d-G~V~vwD~~~~~~l-~~~~~~-~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
+.- +.|..+|....... +-.... .......+.|.+.| |+..|++....+.+..+|+.
T Consensus 155 s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p------dg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 155 ALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP------HSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET------TTTEEEEESSSSSEEEEECS
T ss_pred CCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC------CCCEEEEEcCCCeEEEEcCC
Confidence 988 98888888655332 111110 11223466889988 68888888779999999987
No 293
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=93.90 E-value=7.7 Score=41.08 Aligned_cols=149 Identities=9% Similarity=0.178 Sum_probs=87.2
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC----CC---EEEEEeC---CCcEEEEE
Q 003360 242 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT----SR---VLVSGDQ---SGMVRIFK 311 (826)
Q Consensus 242 ~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~----~~---~Lasgs~---dg~V~iwd 311 (826)
...++++....+-+.+||+.++.++. +. ...++.|..-|+ ++ ++++... +++|++|+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~---~~----------~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~ 105 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHS---YN----------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA 105 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEE---EC----------CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEE
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEE---cc----------CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEE
Confidence 34566666778899999998877433 22 135556665553 21 2333333 57899998
Q ss_pred eCCCCCccccceEEEeecCCCCeEEEEEEEEeecc-CCeEEEEE--ccC-CC-EEEEEecCCeEEEEecC-------CCe
Q 003360 312 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN-GSIISLNM--NRN-SQ-HLAVGSDQGYVYLLDTE-------GPT 379 (826)
Q Consensus 312 ~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~-~~V~~l~~--s~~-g~-~lasGs~dG~V~vwD~~-------~~~ 379 (826)
+..... .+..+.... .. + ... ..+..+|+ ++. +. ++++...+|.+..|++. +.+
T Consensus 106 iDp~~~----~l~~i~~~~--~p-----v---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~ 171 (355)
T 3amr_A 106 IDGKNG----TLQSMTDPD--HP-----I---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGK 171 (355)
T ss_dssp ECTTTC----CEEECSCTT--SC-----E---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEE
T ss_pred ECCCCC----ceeeccccc--cC-----c---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccce
Confidence 852211 111110000 00 0 001 34566677 664 43 57888889999999983 234
Q ss_pred eEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 380 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 380 ~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
++.++.. .+.+-.+...+ ....|+++-.+.-|..++.+
T Consensus 172 lVR~f~l----gsq~EgcvvDd------~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 172 KVRAFKM----NSQTEGMAADD------EYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEEEEC----SSCEEEEEEET------TTTEEEEEETTTEEEEEECS
T ss_pred EEEEecC----CCCcceEEEcC------CCCeEEEecccceEEEEeCC
Confidence 4444433 34566677766 47899999999778777855
No 294
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=93.85 E-value=0.0053 Score=59.78 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=17.9
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHH
Q 003360 782 SKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIA 819 (826)
Q Consensus 782 ~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~ 819 (826)
+++.||||||+.|.+||++|++.|+.|-..|+.|-++|
T Consensus 146 ~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~m 183 (189)
T 4b93_A 146 DLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAM 183 (189)
T ss_dssp CCBCTTSSBCCCCEETTCC-------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999998887
No 295
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=93.79 E-value=1.6 Score=48.03 Aligned_cols=148 Identities=11% Similarity=0.071 Sum_probs=86.2
Q ss_pred eCC--CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-C----cEEEEE
Q 003360 239 HSK--VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-G----MVRIFK 311 (826)
Q Consensus 239 ~s~--~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-g----~V~iwd 311 (826)
++| ++.++++ ...+.|+.+|..+..+.. +. ........|+|+++++.|.++... + .+.+++
T Consensus 144 vdp~~~g~Lyv~-d~~~~I~~id~~~~~v~~---~~--------~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 144 FDPKNHNHLYLV-GEQHPTRLIDFEKEYVST---VY--------SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp EETTEEEEEEEE-EBTEEEEEEETTTTEEEE---EE--------CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred ECCCCCCeEEEE-eCCCcEEEEECCCCEEEE---Ee--------cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 676 2444444 344889999986655322 11 122467899999999966666542 2 222233
Q ss_pred eCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCC
Q 003360 312 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI 390 (826)
Q Consensus 312 ~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~ 390 (826)
.. +... .... +. .-.....++++| +|.++++-..++.|..+|..++........ ..
T Consensus 212 ~~-g~~~--------------~~~~---l~---~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~--~~ 268 (430)
T 3tc9_A 212 RE-SGFK--------------VITE---LT---KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI--QD 268 (430)
T ss_dssp GG-GTSC--------------SEEE---EE---ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC--SS
T ss_pred CC-Ccee--------------eeee---ec---cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc--CC
Confidence 22 1110 0000 11 122356788999 676566666788999999987765211221 12
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEE-ECCCcEEEEECC
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIA-TKDSSVLVLDSD 427 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sg-s~Dg~V~iwd~~ 427 (826)
......++|++ ++++|+++ ...+.|..++..
T Consensus 269 ~~~P~gia~~p------dG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 269 SGWEFHIQFHP------SGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SSCCEEEEECT------TSSEEEEEETTTTEEEEEEEE
T ss_pred CCcceeEEEcC------CCCEEEEEECCCCEEEEEeCC
Confidence 24567899998 58855555 456788887765
No 296
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=93.29 E-value=0.016 Score=56.78 Aligned_cols=42 Identities=10% Similarity=0.152 Sum_probs=3.7
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHhhc
Q 003360 781 ESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHD 822 (826)
Q Consensus 781 ~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~ 822 (826)
-+++.||||||+.|.+||++|.+.|+.|-.-|+.|-++|==+
T Consensus 154 i~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~ 195 (196)
T 2nut_C 154 IEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYA 195 (196)
T ss_dssp HHHHC-------------------------------------
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 458999999999999999999999999999999998877433
No 297
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=93.28 E-value=8.3 Score=41.43 Aligned_cols=151 Identities=7% Similarity=-0.061 Sum_probs=87.3
Q ss_pred eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCCC
Q 003360 239 HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~~ 316 (826)
|++ .+.++++-...+.|..|+..+.....+ +. ........|++.+.+..|... ...+.|.++++....
T Consensus 123 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--~~--------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~ 192 (386)
T 3v65_B 123 FHHRRELVFWSDVTLDRILRANLNGSNVEEV--VS--------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH 192 (386)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCCEEEE--EC--------SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS
T ss_pred EecCCCeEEEEeCCCCcEEEEecCCCCcEEE--Ee--------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc
Confidence 665 556777777788999999865542111 11 011244678888866655544 445667776665221
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec-C-CeEEEEecCCCeeEEeeecccCCCCCe
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD-Q-GYVYLLDTEGPTVLYQKHIASDISSGI 394 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~-d-G~V~vwD~~~~~~l~~~~~~~~~~~~V 394 (826)
. . ......-.....|++.|.+..|..... . +.|..+++......... ...-...
T Consensus 193 ~----------------~-----~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~---~~~~~~P 248 (386)
T 3v65_B 193 R----------------K-----VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA---DTHLFWP 248 (386)
T ss_dssp C----------------E-----EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE---CSSCSCE
T ss_pred e----------------E-----EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE---ECCCCCe
Confidence 1 0 111111234688999987766665543 3 68888888654332111 1223346
Q ss_pred eEEEEeecccCCCCCcEEEEEECCCcEEEEECCC
Q 003360 395 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 428 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~t 428 (826)
..|+|++. ++.+.++-+..+.|..+|...
T Consensus 249 nGlavd~~-----~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 249 NGLTIDYA-----GRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEEEEEGG-----GTEEEEEETTTTEEEEECTTS
T ss_pred eeEEEeCC-----CCEEEEEECCCCEEEEEeCCC
Confidence 78999873 234444445567899999873
No 298
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=93.13 E-value=10 Score=40.10 Aligned_cols=150 Identities=9% Similarity=-0.039 Sum_probs=88.1
Q ss_pred eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEeCCCC
Q 003360 239 HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS-GDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las-gs~dg~V~iwd~~~~~ 316 (826)
|++ .+.++++-...+.|..++..+.....+ +. ........|++.+.+..|.. -...+.|.++++....
T Consensus 80 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--~~--------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 149 (349)
T 3v64_C 80 FHHRRELVFWSDVTLDRILRANLNGSNVEEV--VS--------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH 149 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEE--EC--------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EeccccEEEEEeccCCceEEEecCCCCceEE--Ee--------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc
Confidence 664 455667777788899999855432111 11 01124568899986655544 4456788888876321
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cC-CeEEEEecCCCeeEEeeecccCCCCCe
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQ-GYVYLLDTEGPTVLYQKHIASDISSGI 394 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~d-G~V~vwD~~~~~~l~~~~~~~~~~~~V 394 (826)
. . ......-.....|+++|.+..|.... .. +.|..+++.+.... .+....-...
T Consensus 150 ~----------------~-----~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---~~~~~~~~~P 205 (349)
T 3v64_C 150 R----------------K-----VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR---IIADTHLFWP 205 (349)
T ss_dssp C----------------E-----EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---ESCCSSCSCE
T ss_pred e----------------E-----EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE---EEEECCCCCc
Confidence 1 0 11111123468899998666665554 34 78888888654332 1111223356
Q ss_pred eEEEEeecccCCCCCcEEE-EEECCCcEEEEECCC
Q 003360 395 VSLQFETCSLQGFEKNFLV-IATKDSSVLVLDSDN 428 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~-sgs~Dg~V~iwd~~t 428 (826)
..|++++. +..|+ +-+..+.|..++...
T Consensus 206 nGla~d~~------~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 206 NGLTIDYA------GRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEEEETT------TTEEEEEETTTTEEEEEETTS
T ss_pred ceEEEeCC------CCEEEEEECCCCEEEEEeCCC
Confidence 78999873 44444 445567899999873
No 299
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=93.13 E-value=11 Score=40.63 Aligned_cols=153 Identities=8% Similarity=-0.074 Sum_probs=87.3
Q ss_pred eCC-CCCEEEEEECCCcEEEEeCCCCce-eeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCCC
Q 003360 239 HSK-VKNLFITGHSDGAINFWDVSCPLF-LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKYE 315 (826)
Q Consensus 239 ~s~-~~~~l~Tgs~DGtVriWD~s~~~~-~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~~ 315 (826)
|++ .+.++++-...+.|+.+++.+... .....+- .........|++.+.++.|... ...+.|.+.++...
T Consensus 119 ~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-------~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC------CCCEEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-------eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 665 455667767778898888854210 0000010 1112467889999865555544 45677877776532
Q ss_pred CCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec--CCeEEEEecCCCeeEEeeecccCCCCC
Q 003360 316 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD--QGYVYLLDTEGPTVLYQKHIASDISSG 393 (826)
Q Consensus 316 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~--dG~V~vwD~~~~~~l~~~~~~~~~~~~ 393 (826)
.. . ......-.....|++.|.+.+|..... .+.|...++.+....... ...-..
T Consensus 192 ~~----------------~-----~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~---~~~l~~ 247 (400)
T 3p5b_L 192 KR----------------K-----TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---TENIQW 247 (400)
T ss_dssp SE----------------E-----EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE---CSSCSC
T ss_pred ce----------------E-----EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE---ECCCCc
Confidence 11 0 111111234789999997767766653 378889988654332111 122345
Q ss_pred eeEEEEeecccCCCCCcEEEEE-ECCCcEEEEECCC
Q 003360 394 IVSLQFETCSLQGFEKNFLVIA-TKDSSVLVLDSDN 428 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sg-s~Dg~V~iwd~~t 428 (826)
...|++++. +..|+.+ +....|..+|...
T Consensus 248 P~glavd~~------~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 248 PNGITLDLL------SGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp EEEEEEETT------TTEEEEEETTTTEEEEEETTS
T ss_pred eEEEEEEeC------CCEEEEEECCCCEEEEEeCCC
Confidence 678999873 5555544 5567899999873
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=92.83 E-value=12 Score=43.22 Aligned_cols=230 Identities=11% Similarity=0.009 Sum_probs=119.6
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecccCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCCc
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA--DEDYSLLAKSVPP 224 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~ 224 (826)
-+++.++...|...|...-. ..+.. +...-.....++|.+.+..+..+. .+.|..+......
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~---------------~~~~~-~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~ 73 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGK---------------ENATI-VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE 73 (619)
T ss_dssp CCEEEECSSBEEEECCC-------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----
T ss_pred ceEEEeccccEEEEeCCCCc---------------ceEEE-EEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC
Confidence 35667778888887775410 00111 011123456788888666665544 5566655433221
Q ss_pred --eeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 225 --LLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 225 --~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
......+. ..... +.+ .++++++-...+.|.+.++.+.....+.. ..-.....|++.|....|.
T Consensus 74 ~~~~v~~~~~-~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~----------~~l~~P~~Iavdp~~g~ly 142 (619)
T 3s94_A 74 SVQNVVVSGL-LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW----------QELDQPRAIALDPSSGFMY 142 (619)
T ss_dssp -CEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------SSCSCCCCEEEETTTTEEE
T ss_pred ceEEEEeCCC-CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe----------CCCCCCceEEEecCCCeEE
Confidence 11111111 11222 555 56677887888999999996654322110 1113567899999877666
Q ss_pred EEeCC--CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecC
Q 003360 300 SGDQS--GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTE 376 (826)
Q Consensus 300 sgs~d--g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~ 376 (826)
..... +.|...++..... .. +. ...-.....|++++++..|..+. ..+.|..+|+.
T Consensus 143 ~tD~g~~~~I~r~~~dG~~~----------------~~----l~-~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 143 WTDWGEVPKIERAGMDGSSR----------------FI----II-NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp EEECSSSCEEEEEETTSCSC----------------EE----EE-CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred EeccCCCCEEEEEECCCCce----------------EE----EE-eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence 66543 4444444432111 00 10 01123468899998766666554 56789999987
Q ss_pred CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEe
Q 003360 377 GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 377 ~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~ 434 (826)
+....... .+.......|++.. +...++-...+.|...|..+|+....
T Consensus 202 G~~~~~~~---~~~~~~P~gi~~~~-------~~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 202 GTNRQAVV---KGSLPHPFALTLFE-------DILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp CCEEC------------CCCEEESS-------SEEEEECTTTCSEEEEESSSCCCCEE
T ss_pred CCccEEEE---eCCCCCceEEEEeC-------CEEEEecCCCCEEEEEECCCCcccEE
Confidence 64332111 11111122344432 44444545677899999988876544
No 301
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=92.75 E-value=10 Score=39.27 Aligned_cols=149 Identities=8% Similarity=-0.024 Sum_probs=86.8
Q ss_pred eCCC-CCEEEEEECCCcEEEEeCCC----CceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEe
Q 003360 239 HSKV-KNLFITGHSDGAINFWDVSC----PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKL 312 (826)
Q Consensus 239 ~s~~-~~~l~Tgs~DGtVriWD~s~----~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~ 312 (826)
|++. +.++++-..++.|..+|..+ .....+ +. ..-.....|++.+.++.|..+ ...+.|.++++
T Consensus 37 ~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~--~~--------~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~ 106 (316)
T 1ijq_A 37 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--IS--------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC--------CEEE--EC--------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE--Ee--------CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence 6664 55777777789999999854 221110 11 111345788999766555544 56778888887
Q ss_pred CCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecC--CeEEEEecCCCeeEEeeecccCC
Q 003360 313 KYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQ--GYVYLLDTEGPTVLYQKHIASDI 390 (826)
Q Consensus 313 ~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~d--G~V~vwD~~~~~~l~~~~~~~~~ 390 (826)
..... . ......-.....+++.|.+..|...... +.|..+++...... .. ....
T Consensus 107 ~g~~~-----------------~----~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~-~~--~~~~ 162 (316)
T 1ijq_A 107 KGVKR-----------------K----TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL--VTEN 162 (316)
T ss_dssp TSSSE-----------------E----EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EE--ECSS
T ss_pred CCCce-----------------E----EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE-EE--EECC
Confidence 63211 0 0001112346889999876666655543 68888888543322 11 1122
Q ss_pred CCCeeEEEEeecccCCCCCcEEE-EEECCCcEEEEECC
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLV-IATKDSSVLVLDSD 427 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~-sgs~Dg~V~iwd~~ 427 (826)
-.....+++++ ++..|+ +-+..+.|..+|..
T Consensus 163 ~~~P~gla~d~------~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 163 IQWPNGITLDL------LSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp CSCEEEEEEET------TTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEec------cCCEEEEEECCCCeEEEEecC
Confidence 34567888987 355554 44456789999987
No 302
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=92.70 E-value=9.3 Score=38.55 Aligned_cols=170 Identities=15% Similarity=0.205 Sum_probs=100.2
Q ss_pred Cccee--eCCCCC-EEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 003360 234 DGSQS--HSKVKN-LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIF 310 (826)
Q Consensus 234 g~V~~--~s~~~~-~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iw 310 (826)
+.+.. +.|++. ++++...++.|...|.++... ..+.. .+ ....-.|++.+++.++++.-.++.+.++
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~---~~i~l------~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLI---RTIPL------DF-VKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEE---EEEEC------SS-CSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEE---EEEec------CC-CCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 34444 777655 556677788898899885542 22221 01 1346678888888776766667889999
Q ss_pred EeCCCCCccccceEEEeecCCCCeEEEEEEEE----eeccCCeEEEEEccCCCEEEEEecCCeEEEEecCC------Cee
Q 003360 311 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV----MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG------PTV 380 (826)
Q Consensus 311 d~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~----~~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~------~~~ 380 (826)
++..... +. .+....+ ...+.....|+|+|.++.|.++.+.....||.+.. -++
T Consensus 97 ~v~~~~~-----i~-----------~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i 160 (255)
T 3qqz_A 97 SLTPNSE-----VK-----------ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHI 160 (255)
T ss_dssp EECTTCC-----EE-----------EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEE
T ss_pred EcCCCCe-----ee-----------eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceee
Confidence 8874321 00 0000111 11244579999999998888888766656666642 122
Q ss_pred EEeeec-ccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 381 LYQKHI-ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 381 l~~~~~-~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+..... .......+.+++|.|. .+.+++.......+.++|.. |+.+..+
T Consensus 161 ~~~~~~~~~~~~~d~S~l~~dp~-----tg~lliLS~~s~~L~~~d~~-g~~~~~~ 210 (255)
T 3qqz_A 161 SKDKALQRQFTLDDVSGAEFNQQ-----KNTLLVLSHESRALQEVTLV-GEVIGEM 210 (255)
T ss_dssp EECHHHHHTCCSSCCCEEEEETT-----TTEEEEEETTTTEEEEECTT-CCEEEEE
T ss_pred ecchhhccccccCCceeEEEcCC-----CCeEEEEECCCCeEEEEcCC-CCEEEEE
Confidence 110000 0112234678899985 35555555566788888876 7766554
No 303
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=92.59 E-value=14 Score=40.37 Aligned_cols=176 Identities=7% Similarity=-0.030 Sum_probs=88.5
Q ss_pred CCCEEEEEEeeCCCeEEEecCC----c-EEEeccCCCceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCC
Q 003360 192 DSSITAMKLITGNSFILSSADE----D-YSLLAKSVPPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCP 263 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~d~----~-i~~w~~~~~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~ 263 (826)
......+++.+++..+++...+ . +.................-..-.. +++ ++.++++-..++.|+.+|....
T Consensus 181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 3457899999999944443321 1 221221111110000000011111 777 7888888778889999998533
Q ss_pred ce-eeeeecccccccccccCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEeCCCCCccccceEEEeec--CCCCeEEEEE
Q 003360 264 LF-LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGD-QSGMVRIFKLKYEPHAIENSFLSFTGS--KKGNSHIIHS 339 (826)
Q Consensus 264 ~~-~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs-~dg~V~iwd~~~~~~~~~~~~~~i~~s--~~~~~~~~~~ 339 (826)
.. ..+.... ....-..|+|+|+++.|.++. ..+.|..+++....... .....+... ..+... +
T Consensus 261 ~~~~~~~~~~---------~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~-~~~~~~ag~~g~~g~~d---g 327 (433)
T 4hw6_A 261 TLTEEEVMMD---------TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL-AVPYIVCGQHSSPGWVD---G 327 (433)
T ss_dssp CEEEEEEECS---------CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB-CCCEEEEECTTCCCCBC---E
T ss_pred eEEEEEeccC---------CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc-CcEEEEEecCCCCccCC---C
Confidence 32 1111111 112234799999998655554 46788888876321100 011111111 111000 0
Q ss_pred EEEeeccCCeEEEEE---------ccCCCEEEEEecCCeEEEEecCCCeeE
Q 003360 340 VKVMKINGSIISLNM---------NRNSQHLAVGSDQGYVYLLDTEGPTVL 381 (826)
Q Consensus 340 ~~~~~~~~~V~~l~~---------s~~g~~lasGs~dG~V~vwD~~~~~~l 381 (826)
......-.....+++ .++|.+.++-...+.|+.+|. .+.+.
T Consensus 328 ~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~ 377 (433)
T 4hw6_A 328 MGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT 377 (433)
T ss_dssp EGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred cccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence 000000123577888 677766666667788999986 45444
No 304
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.54 E-value=2 Score=46.70 Aligned_cols=77 Identities=14% Similarity=0.267 Sum_probs=56.9
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEecCCCee------------EEeeeccc---CCCCCeeEEEEeecccCCCCCcEE
Q 003360 348 SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV------------LYQKHIAS---DISSGIVSLQFETCSLQGFEKNFL 412 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~------------l~~~~~~~---~~~~~V~sl~f~~~~~~~~d~~~l 412 (826)
.|..+..||+|.+||..+.. .|.|..+..+.. .+...+.. ....+|..+.|+|.. ..+.+|
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~---~~ds~L 142 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKS---YRDSCI 142 (452)
T ss_dssp TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTB---GGGCEE
T ss_pred ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEecccc---CCCCeE
Confidence 57889999999999988655 688988863210 11222211 135789999999953 347899
Q ss_pred EEEECCCcEEEEECCC
Q 003360 413 VIATKDSSVLVLDSDN 428 (826)
Q Consensus 413 ~sgs~Dg~V~iwd~~t 428 (826)
++-+.|+.|++||+..
T Consensus 143 VVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 143 VVLKEDDTITMFDILN 158 (452)
T ss_dssp EEEETTSCEEEEETTC
T ss_pred EEEecCCEEEEEEccc
Confidence 9999999999999986
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=92.44 E-value=19 Score=41.50 Aligned_cols=228 Identities=12% Similarity=0.017 Sum_probs=127.8
Q ss_pred eEEEeccCccEEEecchhHHHHHhhccCCCCCCCCccceeeecc-cCCCEEEEEEeeCCCeEEEec--CCcEEEeccCCC
Q 003360 147 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPF-LDSSITAMKLITGNSFILSSA--DEDYSLLAKSVP 223 (826)
Q Consensus 147 ~liv~~~~G~l~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~ 223 (826)
.+++.+....|...|...- . ....++. .-..+..++|.+....+..+. ++.|..++....
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~----------------~-~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~ 69 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETN----------------N-NNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS 69 (628)
T ss_dssp CEEEEEETTEEEEEESSCT----------------T-CEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cEEEEEeCCcEEEEECCCC----------------C-cceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC
Confidence 3556667788888777541 0 1111221 123567889998766665543 667766644332
Q ss_pred ceeec-ccccCCccee--eC-CCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEE
Q 003360 224 PLLDF-ETKLKDGSQS--HS-KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 299 (826)
Q Consensus 224 ~~~~~-~~~h~g~V~~--~s-~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~La 299 (826)
..... ..+. +.... +. ..++++++-...+.|.+.++.+.....+. . ..-.....|++.|....|.
T Consensus 70 ~~~~v~~~g~-~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~--~--------~~l~~P~~iavdp~~G~lY 138 (628)
T 4a0p_A 70 ALEHVVEFGL-DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV--W--------KDLDSPRALALDPAEGFMY 138 (628)
T ss_dssp SCEEEECSSC-SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE--C--------SSCCCEEEEEEETTTTEEE
T ss_pred CcEEEEeCCC-CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE--e--------CCCCCcccEEEccCCCeEE
Confidence 22222 1111 11112 44 34667788778889999998655422211 0 1113568999999776776
Q ss_pred EEeC--CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecC
Q 003360 300 SGDQ--SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTE 376 (826)
Q Consensus 300 sgs~--dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~ 376 (826)
.... .+.|...++..... . .....-.....|+++++++.|..+. ..+.|..+|+.
T Consensus 139 ~tD~g~~~~I~r~~~dG~~~----------------~------~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 139 WTEWGGKPKIDRAAMDGSER----------------T------TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp EEECSSSCEEEEEETTSCSC----------------E------EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EeCCCCCCEEEEEeCCCCce----------------E------EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 6654 34555555542211 1 1111223478899999877776665 46789999986
Q ss_pred CCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCceEEee
Q 003360 377 GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 435 (826)
Q Consensus 377 ~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~ 435 (826)
+..... .. ........+++.. +.+.++-...+.|...|..+|+....+
T Consensus 197 G~~~~v-~~---~~l~~P~glav~~-------~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 197 GLNREV-IA---DDLPHPFGLTQYQ-------DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp SCSCEE-EE---ECCSCEEEEEEET-------TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCceEE-ee---ccCCCceEEEEEC-------CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 643321 11 1122334566543 445555555789999998888755443
No 306
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=92.26 E-value=15 Score=40.01 Aligned_cols=113 Identities=4% Similarity=0.056 Sum_probs=66.1
Q ss_pred CCCEEEEEEeeCCCeEEEec--CCc---EEEe-ccCCCce--eec-ccccCCcceeeCC-CCCEEEEEECCCcEEEEeCC
Q 003360 192 DSSITAMKLITGNSFILSSA--DED---YSLL-AKSVPPL--LDF-ETKLKDGSQSHSK-VKNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 192 ~~~Vt~~~fs~~~~~l~~~~--d~~---i~~w-~~~~~~~--~~~-~~~h~g~V~~~s~-~~~~l~Tgs~DGtVriWD~s 261 (826)
......++|.++++.++.+. .+. ..+| ....... ..+ ...|..++. ++| ++.++++-..++.|..+|..
T Consensus 178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~gia-vdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAE-THPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEE-ECTTTCCEEEEETTTTEEEEEETT
T ss_pred CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEE-EeCCCCEEEEEECCCCEEEEEECC
Confidence 34577899999999666654 221 2222 2221111 111 111111111 778 78888888888999999996
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEeCC
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG-DQSGMVRIFKLKY 314 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg-s~dg~V~iwd~~~ 314 (826)
+.....+..+. .......|+|+|++++|.++ ...+.|..|+...
T Consensus 257 ~~~~~~~~~~~---------~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 257 TQETTPLFTIQ---------DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TTEEEEEEECS---------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCcEEEEEEcC---------CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 55531211111 11346789999999955554 4567888888763
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=91.81 E-value=5 Score=42.10 Aligned_cols=166 Identities=7% Similarity=0.028 Sum_probs=93.4
Q ss_pred EEEEEeeCCCeEEEec--CCcEEEeccCCCceeeccccc-----CCc--cee--e---CCCCCEEEEEEC----------
Q 003360 196 TAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETKL-----KDG--SQS--H---SKVKNLFITGHS---------- 251 (826)
Q Consensus 196 t~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~h-----~g~--V~~--~---s~~~~~l~Tgs~---------- 251 (826)
-+.+|.+....++.++ .+.|..|+...........+. .+. +.. + .++++++++...
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 3567877555555555 889999966532222221221 111 122 6 578778776442
Q ss_pred ---CCcEEEEeCC---CCceeeeeeccccccc--ccccCC-CCeEEEEEeCCCCEEEEEeCC-CcEEEEEeCCCCCcccc
Q 003360 252 ---DGAINFWDVS---CPLFLLILSLKQQSEK--DFSLSG-IPLTALYYDGTSRVLVSGDQS-GMVRIFKLKYEPHAIEN 321 (826)
Q Consensus 252 ---DGtVriWD~s---~~~~~~i~~l~~~~~~--~~~~h~-~~V~~l~fsp~~~~Lasgs~d-g~V~iwd~~~~~~~~~~ 321 (826)
+..|..+|+. .........|...... ...+.. .....|+..++|+..++++.- +. ||.+..
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~p------- 166 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSA------- 166 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECT-------
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeC-------
Confidence 6779999986 3332111122100000 000011 247899999999999988877 66 455542
Q ss_pred ceEEEeecCCCCeEEEEEEEEe--eccCCeEEEEEccCCCEEEEEecCCeEEEEecCCCe
Q 003360 322 SFLSFTGSKKGNSHIIHSVKVM--KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 379 (826)
Q Consensus 322 ~~~~i~~s~~~~~~~~~~~~~~--~~~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~ 379 (826)
++.....+.+... ......+.|+++|+|..|++....|.+..+|+..+.
T Consensus 167 ---------dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv 217 (334)
T 2p9w_A 167 ---------DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPY 217 (334)
T ss_dssp ---------TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSS
T ss_pred ---------CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCc
Confidence 2221110001010 001226789999999988888779999999998543
No 308
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=91.16 E-value=0.027 Score=55.05 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=32.8
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHH
Q 003360 781 ESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEV 815 (826)
Q Consensus 781 ~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~ 815 (826)
-+++.||||||+.|.+||++|++.|..|-.-|+.|
T Consensus 158 I~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~l 192 (199)
T 3kyq_A 158 MESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQ 192 (199)
T ss_dssp GGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999986
No 309
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=90.44 E-value=42 Score=41.66 Aligned_cols=124 Identities=18% Similarity=0.260 Sum_probs=68.0
Q ss_pred CCEEEEEe----------CCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE
Q 003360 295 SRVLVSGD----------QSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG 364 (826)
Q Consensus 295 ~~~Lasgs----------~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG 364 (826)
..+|++|. ..|.|.+|++..+ .... +.....+++|++|+--. | +|++|
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~-----------------kL~l---v~~~~v~g~v~al~~~~-g-~Lla~ 901 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG-----------------KLQT---VAEKEVKGAVYSMVEFN-G-KLLAS 901 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETT-----------------EEEE---EEEEEESSCEEEEEEET-T-EEEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECC-----------------EEEE---EEEEEcCCcCEEEeeeC-C-EEEEE
Confidence 46888886 3577888887511 0111 22334488899987553 4 56655
Q ss_pred ecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE--EECCCCceEEeeeccCCCC
Q 003360 365 SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV--LDSDNGNMLSTNLIHPKKP 442 (826)
Q Consensus 365 s~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i--wd~~tg~~i~~~~~~~~~~ 442 (826)
- ..+|++||+...+.+. ... .+-..|..+..... ++++++|..-..|.+ |+...+++... .....+
T Consensus 902 i-g~~l~vy~l~~~~~L~-~~~--~~~~~i~~~~l~~~------~~~I~vgD~~~Sv~~~~y~~~~~~L~~~--a~D~~~ 969 (1158)
T 3ei3_A 902 I-NSTVRLYEWTTEKELR-TEC--NHYNNIMALYLKTK------GDFILVGDLMRSVLLLAYKPMEGNFEEI--ARDFNP 969 (1158)
T ss_dssp E-TTEEEEEEECTTSCEE-EEE--EECCCSCEEEEEEE------TTEEEEEESSBCEEEEEEETTTTEEEEE--EECCSC
T ss_pred c-CCEEEEEECCCCceEE-EEe--eccccEEEEEEecc------CCEEEEEEhhheEEEEEEEcCCCeEEEE--Eeeccc
Confidence 4 4689999998765442 111 11111322222222 678888887766655 45544443322 233334
Q ss_pred CcceEEEEec
Q 003360 443 SRALFMQILN 452 (826)
Q Consensus 443 ~~~lsi~~l~ 452 (826)
..+.+..+++
T Consensus 970 ~~vta~~~ld 979 (1158)
T 3ei3_A 970 NWMSAVEILD 979 (1158)
T ss_dssp BCEEEEEEEE
T ss_pred ccEEEEEEEc
Confidence 4455666665
No 310
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=89.22 E-value=40 Score=39.57 Aligned_cols=201 Identities=11% Similarity=0.140 Sum_probs=103.4
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee-eCCCCCEEEEEECCCcEEEEeCCCCceeeeeec
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS-HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL 271 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~-~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l 271 (826)
..|.++....++ .|+.+.+.-+..|+.....+..........|.+ ...++ .|..|+.+ -+..+|............
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~ 139 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNGILVYNYRADRYEQPETDFPTDVRTMALQGD-TLWLGALN-GLYTYQLQSRKLTSFDTR 139 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTEEEEEETTTTEECCCSCCCCSCEEEEEEETT-EEEEEETT-EEEEEETTTCCEEEECHH
T ss_pred ceEEEEEEcCCC-cEEEEeCCCeEEEeCCCCEEECcccCCCceEEEEEecCC-cEEEEcCC-cceeEeCCCCeEEEeccC
Confidence 467877655554 567766333456654432222110111223444 33344 45556665 467788754443221000
Q ss_pred ccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEE
Q 003360 272 KQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIIS 351 (826)
Q Consensus 272 ~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~ 351 (826)
. . ......|.++....++.+.+ |+..| |..|+...... ..+...... ......|.+
T Consensus 140 ~----~--~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~------~~~~~~~~~----------~~~~~~i~~ 195 (758)
T 3ott_A 140 R----N--GLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKF------EGIPLPVHS----------SQSNLFVNS 195 (758)
T ss_dssp H----H--CCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEE------EEECCCCCT----------TCSSCCEEE
T ss_pred C----C--CcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCce------EEecCCCcc----------ccccceeEE
Confidence 0 0 11235788888888777655 55555 55666543211 100000000 001234888
Q ss_pred EEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEEECCCCce
Q 003360 352 LNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 431 (826)
Q Consensus 352 l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~tg~~ 431 (826)
+....++..|-+|+.. -+..+|..+++....... ....|.++.... ...|++|+.+ -+.+++..++.+
T Consensus 196 i~~d~~~~~lWigt~~-Gl~~~~~~~~~~~~~~~l---~~~~i~~i~~d~-------~g~lWigT~~-Gl~~~~~~~~~~ 263 (758)
T 3ott_A 196 LLEDTTRQCVWIGTEG-YLFQYFPSTGQIKQTEAF---HNNSIKSLALDG-------NGDLLAGTDN-GLYVYHNDTTPL 263 (758)
T ss_dssp EEEETTTTEEEEEEEE-EEEEEETTTTEEEEEEEE---EEEEEEEEEECT-------TCCEEEEETT-EEEEECCTTSCC
T ss_pred EEEECCCCEEEEEECC-CCeEEcCCCCeEEeccCC---CCCeEEEEEEcC-------CCCEEEEeCC-ceeEEecCCCcE
Confidence 8888777766667754 477889877664321111 122355555443 5567888854 588898876654
Q ss_pred E
Q 003360 432 L 432 (826)
Q Consensus 432 i 432 (826)
.
T Consensus 264 ~ 264 (758)
T 3ott_A 264 Q 264 (758)
T ss_dssp E
T ss_pred E
Confidence 3
No 311
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=89.15 E-value=7.2 Score=42.77 Aligned_cols=149 Identities=9% Similarity=0.066 Sum_probs=82.3
Q ss_pred eCCC---CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEe
Q 003360 239 HSKV---KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG---MVRIFKL 312 (826)
Q Consensus 239 ~s~~---~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg---~V~iwd~ 312 (826)
++++ ++++++-.. +.|+.+|........ +. ........|+|+++++ |.++...+ .-.++.+
T Consensus 146 vd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~---~~--------~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 146 FDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDI---KT--------TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp ECTTTTTCEEEEECBT-SCEEEEETTTTEEEE---EC--------CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred EccccCCCEEEEEeCC-CCEEEEECCCCEEEE---ee--------cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence 6763 556655444 899999985444211 11 1224688999999999 55444322 1112222
Q ss_pred CC-CCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc-CCCEEEEEecCCeEEEEecCCCeeEEeeecccCC
Q 003360 313 KY-EPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDI 390 (826)
Q Consensus 313 ~~-~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~ 390 (826)
.. .... . ... +. .-.....+++++ +|.+.++-..++.|+.+|..++.+...... .+.
T Consensus 213 ~~~~~~~-------------~-~~~---~~---~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~-~~~ 271 (433)
T 4hw6_A 213 TRASGFT-------------E-RLS---LC---NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM-MDT 271 (433)
T ss_dssp CGGGTTC-------------C-EEE---EE---ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE-CSC
T ss_pred ECCCCee-------------c-ccc---cc---ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec-cCC
Confidence 21 1000 0 000 11 123356688999 666555555678999999987766211111 111
Q ss_pred CCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECC
Q 003360 391 SSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSD 427 (826)
Q Consensus 391 ~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~ 427 (826)
...-..++|++ ++.+|+++. ..+.|+.++..
T Consensus 272 ~~~~~~ia~dp------dG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 272 KGSNFHIVWHP------TGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CSSCEEEEECT------TSSEEEEEETTTTEEEEEEBC
T ss_pred CCCcccEEEeC------CCCEEEEEeCCCCEEEEEeCC
Confidence 22234688888 577565554 56788887765
No 312
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=88.49 E-value=11 Score=42.08 Aligned_cols=157 Identities=11% Similarity=0.121 Sum_probs=88.1
Q ss_pred eCCC--CCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEE-------eCCCCEEEEEeCCC----
Q 003360 239 HSKV--KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY-------DGTSRVLVSGDQSG---- 305 (826)
Q Consensus 239 ~s~~--~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~f-------sp~~~~Lasgs~dg---- 305 (826)
++|. ++++++-...+.|++.|...+.+..+.... ...-.....|+| ++++..|+++...+
T Consensus 146 ~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-------~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 146 FDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN-------TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT-------TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred EccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC-------ccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 7773 556666555578899998766643322111 011136889999 99999777776654
Q ss_pred -c--EEEEEeCC-CCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccC-CCEEEEEecCCeEEEEecC----
Q 003360 306 -M--VRIFKLKY-EPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTE---- 376 (826)
Q Consensus 306 -~--V~iwd~~~-~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~lasGs~dG~V~vwD~~---- 376 (826)
. |.+++... +.... ..++ .. +... .....++++|+ +.++++-..++.|..+|+.
T Consensus 219 ~~~~V~~i~r~~~G~~~~---------~~~~--~~---v~~~---~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDD---------RSDI--QL---IAAY---KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp GEEEEEEEECCTTSCCST---------TSCE--EE---EEEE---SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHH
T ss_pred cCceEEEEecCCCCceee---------cccc--ee---eccC---CCceEEEEcCCCCeEEEEECCCCEEEEEecccccc
Confidence 2 44444221 01100 0000 01 2111 13457788994 5555566688899999997
Q ss_pred ---CCee-----------EEe-eecccCCCCCeeEEEEeecccCCCCCcEEEEE-ECCCcEEEEECC
Q 003360 377 ---GPTV-----------LYQ-KHIASDISSGIVSLQFETCSLQGFEKNFLVIA-TKDSSVLVLDSD 427 (826)
Q Consensus 377 ---~~~~-----------l~~-~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg-s~Dg~V~iwd~~ 427 (826)
++.+ .-. ... ........++|++ ++.+|+++ +....|+.++..
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~--~~~~~p~~ia~~p------~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTI--ADPSWEFQIFIHP------TGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEEC--SSSSCCEEEEECT------TSSEEEEEETTTTEEEEEEEE
T ss_pred cccCceeecccccccccccceeEec--CCCCCceEEEEcC------CCCEEEEEeCCCCEEEEEecC
Confidence 5554 101 111 2234567899998 58765555 456678885543
No 313
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=84.80 E-value=61 Score=37.16 Aligned_cols=204 Identities=9% Similarity=-0.025 Sum_probs=112.3
Q ss_pred CCEEEEEEeeCCCeEEEec--CCcEEEeccCCCceeecccc------cCCccee--eCCC-CCEEEEEECCCcEEEEeCC
Q 003360 193 SSITAMKLITGNSFILSSA--DEDYSLLAKSVPPLLDFETK------LKDGSQS--HSKV-KNLFITGHSDGAINFWDVS 261 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~--d~~i~~w~~~~~~~~~~~~~------h~g~V~~--~s~~-~~~l~Tgs~DGtVriWD~s 261 (826)
..+..+.|.+....+..+. .+.|..+.........+... ..+.... +... +++++|-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 4577889988766655543 56666664333222111011 0112222 5554 5577888888999999987
Q ss_pred CCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCc-EEEEEeCCCCCccccceEEEeecCCCCeEEEEEE
Q 003360 262 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM-VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 340 (826)
Q Consensus 262 ~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~-V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 340 (826)
+..... +- .......+.|++.|....|........ -+||.... +|.... .
T Consensus 420 G~~~~~---l~-------~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~----------------dG~~~~---~ 470 (628)
T 4a0p_A 420 GRSVGV---VL-------KGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAAL----------------DGTERE---V 470 (628)
T ss_dssp SCEEEE---EE-------ECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEET----------------TSCSCE---E
T ss_pred CCeEEE---EE-------eCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeC----------------CCCCcE---E
Confidence 665322 11 011246889999995555544433222 24554431 121100 0
Q ss_pred EEeeccCCeEEEEEccCCCEEEEEec-CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC
Q 003360 341 KVMKINGSIISLNMNRNSQHLAVGSD-QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS 419 (826)
Q Consensus 341 ~~~~~~~~V~~l~~s~~g~~lasGs~-dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg 419 (826)
.....-...+.|+++++...|..+.. .+.|..+|+.+.... .+. ........+++... +.+.++=....
T Consensus 471 l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~-~~~--~~~~~~P~glav~~-------~~ly~tD~~~~ 540 (628)
T 4a0p_A 471 LFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI-VLE--DSNILQPVGLTVFE-------NWLYWIDKQQQ 540 (628)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE--CSSCSCEEEEEEET-------TEEEEEETTTT
T ss_pred EEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceE-EEE--cCCCCCcEEEEEEC-------CEEEEEECCCC
Confidence 01111234689999998777776654 578999998654322 111 12223345565532 55555555667
Q ss_pred cEEEEECCCCceEEee
Q 003360 420 SVLVLDSDNGNMLSTN 435 (826)
Q Consensus 420 ~V~iwd~~tg~~i~~~ 435 (826)
.|...|..+|+....+
T Consensus 541 ~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 541 MIEKIDMTGREGRTKV 556 (628)
T ss_dssp EEEEEETTSSSCCEEE
T ss_pred eEEEEECcCCCCcEEE
Confidence 8999998888765554
No 314
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=84.75 E-value=4.7 Score=47.37 Aligned_cols=153 Identities=8% Similarity=-0.025 Sum_probs=78.9
Q ss_pred eCCCC-CEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEeCCCC
Q 003360 239 HSKVK-NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS-GDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~~~-~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las-gs~dg~V~iwd~~~~~ 316 (826)
|++.+ .++++-...+.|+.+++.+..... .. ...+.........|++.+.++.|+. -...+.|.++++....
T Consensus 413 ~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~--~~----~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 413 TEVASNRIYWSDLSQRMICSTQLDRAHGVS--SY----DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp EETTTTEEEECCTTTTSBEEEESCCCCC-C--CC----CCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred cccccCeEEEEecCCCeEEEEecCCCCCCc--ce----EEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 66544 455565667888888885411000 00 0000001123456788765544444 3456788888875321
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEee-ccCCeEEEEEccCCCEEEEEec--CCeEEEEecCCCeeEEeeecccCCCCC
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMK-INGSIISLNMNRNSQHLAVGSD--QGYVYLLDTEGPTVLYQKHIASDISSG 393 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~~~~V~~l~~s~~g~~lasGs~--dG~V~vwD~~~~~~l~~~~~~~~~~~~ 393 (826)
. ..... .-.....|+++|.+.+|..... .+.|.++++......... ...-..
T Consensus 487 ~----------------------~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~---~~~l~~ 541 (699)
T 1n7d_A 487 R----------------------KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---TENIQW 541 (699)
T ss_dssp E----------------------EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES---CSSCSS
T ss_pred e----------------------EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE---eCCCCC
Confidence 1 01111 1123567888887665555443 267888887543221101 111234
Q ss_pred eeEEEEeecccCCCCCcEEEEEECCCcEEEEECC
Q 003360 394 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 427 (826)
Q Consensus 394 V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iwd~~ 427 (826)
...|+|++. .+.+.++-+..+.|.+++..
T Consensus 542 PnGlavd~~-----~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 542 PNGITLDLL-----SGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp CCCEEECTT-----TCCEEEEETTTTEEEEECSS
T ss_pred ccEEEEecc-----CCEEEEEecCCCeEEEEccC
Confidence 556888873 24444555566789999886
No 315
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=84.33 E-value=45 Score=35.24 Aligned_cols=104 Identities=7% Similarity=0.133 Sum_probs=62.5
Q ss_pred EEEEEEC--CCcEEEEeC--CCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC---C------------C
Q 003360 245 LFITGHS--DGAINFWDV--SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ---S------------G 305 (826)
Q Consensus 245 ~l~Tgs~--DGtVriWD~--s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~---d------------g 305 (826)
++++-|. +.+|.+|++ .+....++..+... .-...+.+.+.+++++.++... | .
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~-------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT-------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccC-------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCC
Confidence 6666666 678889887 33443333333311 1157889999999987776541 1 1
Q ss_pred cEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe-cCCeEEEEecCC
Q 003360 306 MVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEG 377 (826)
Q Consensus 306 ~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~ 377 (826)
.=.||.+..+ .... + ...-..-+.|+|+||++.|.++. ..+.|..||+..
T Consensus 202 ~g~vyr~d~~-----------------~~~~---~--~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 202 WSFVTYYSPN-----------------DVRV---V--AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp CEEEEEECTT-----------------CCEE---E--EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ccEEEEEECC-----------------eEEE---e--ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 2344444421 1110 1 11123468899999998877665 578899999863
No 316
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=84.18 E-value=56 Score=36.23 Aligned_cols=167 Identities=9% Similarity=-0.026 Sum_probs=82.5
Q ss_pred CEEEEEEee-CCCeEEEecC--CcEEEeccCCCceeecccccCCc---cee--e-------CCCCCEEEEE-ECCCc---
Q 003360 194 SITAMKLIT-GNSFILSSAD--EDYSLLAKSVPPLLDFETKLKDG---SQS--H-------SKVKNLFITG-HSDGA--- 254 (826)
Q Consensus 194 ~Vt~~~fs~-~~~~l~~~~d--~~i~~w~~~~~~~~~~~~~h~g~---V~~--~-------s~~~~~l~Tg-s~DGt--- 254 (826)
....++|.| +...|+.+.+ ..|++.+.....+..+...-.++ ... | +++++.|+.+ ..++.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356788888 4555666552 34555555444444431111111 222 7 8999844444 44423
Q ss_pred ---EEEEeCCC-Ccee--e-eeecccccccccccCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEeC-------CCCCcc
Q 003360 255 ---INFWDVSC-PLFL--L-ILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLK-------YEPHAI 319 (826)
Q Consensus 255 ---VriWD~s~-~~~~--~-i~~l~~~~~~~~~~h~~~V~~l~fsp~~-~~Lasgs~dg~V~iwd~~-------~~~~~~ 319 (826)
|.+.+... .... . ...+. . ......++++|++ .++++-..++.|..||+. ++....
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-----~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-----A----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-----E----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CceEEEEecCCCCceeecccceeec-----c----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 55565422 1210 0 00010 0 1234577889954 555566677889999886 332200
Q ss_pred ccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEE-ecCCeEEEEecCC
Q 003360 320 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG-SDQGYVYLLDTEG 377 (826)
Q Consensus 320 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasG-s~dG~V~vwD~~~ 377 (826)
+.... ..+..-. +.........+.|+|+|+|..|.++ +....|+.+|...
T Consensus 291 p~~~~-----~~g~~~~---l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 291 PIVKN-----NPNTFKQ---LFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp CBGGG-----CTTTEEE---EEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccccc-----cccccce---eEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 00000 0000000 1111112346789999999965554 4677888877643
No 317
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=83.92 E-value=66 Score=36.82 Aligned_cols=197 Identities=10% Similarity=-0.010 Sum_probs=102.5
Q ss_pred CCEEEEEEeeCCCeEEEe-c-CCcEEEeccCCCceeecccccCCccee--eCC-CCCEEEEEECCCcEEEEeCCCCceee
Q 003360 193 SSITAMKLITGNSFILSS-A-DEDYSLLAKSVPPLLDFETKLKDGSQS--HSK-VKNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~-~-d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
..+..++|.+.+..+..+ . .+.|..+.........+....-+.... +.. .+++++|-+..+.|.+-++.+.....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 356788898855555443 3 566666644332222221111111222 443 56688887888899999986554222
Q ss_pred eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeec
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS--GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKI 345 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d--g~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~ 345 (826)
+-. ..-.....|++.|....|...... +.|...++..... .. +. ...
T Consensus 429 ---l~~-------~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~----------------~~----l~-~~~ 477 (619)
T 3s94_A 429 ---LIS-------EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR----------------VV----LV-NTS 477 (619)
T ss_dssp ---EEC-------TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----------------EE----EE-CSS
T ss_pred ---EEE-------CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc----------------EE----EE-eCC
Confidence 110 112467899999986666655442 3444444432111 10 11 111
Q ss_pred cCCeEEEEEccCCCEEEEEe-cCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 346 NGSIISLNMNRNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 346 ~~~V~~l~~s~~g~~lasGs-~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
-...+.|+++++...|..+. ..+.|..+|+.+........ ........++... +.+.++-...+.|...
T Consensus 478 l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~---~~l~~P~glav~~-------~~ly~tD~~~~~I~~~ 547 (619)
T 3s94_A 478 LGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE---DKIPHIFGFTLLG-------DYVYWTDWQRRSIERV 547 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEE---CCCCSSCCEEEET-------TEEEEECTTSSCEEEE
T ss_pred CCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEec---cCCCCcEEEEEEC-------CEEEEeecCCCeEEEE
Confidence 23467899998776776665 45778888886543221111 1111122343322 3333343445567777
Q ss_pred ECCCCc
Q 003360 425 DSDNGN 430 (826)
Q Consensus 425 d~~tg~ 430 (826)
|..+|.
T Consensus 548 ~k~~g~ 553 (619)
T 3s94_A 548 HKRSAE 553 (619)
T ss_dssp ESSSCC
T ss_pred EcCCCc
Confidence 777763
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=80.95 E-value=52 Score=33.53 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=34.7
Q ss_pred CCCEEEEEECC--------CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC-C-----CcE
Q 003360 242 VKNLFITGHSD--------GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ-S-----GMV 307 (826)
Q Consensus 242 ~~~~l~Tgs~D--------GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~-d-----g~V 307 (826)
++.+++.|+.+ ..+.+||........+..+.. ....-.++. -++.+++.|+. + ..+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--------~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 167 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--------VVYGHTVLS--HMDLVYVIGGKGSDRKCLNKM 167 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--------CCBSCEEEE--ETTEEEEECCBCTTSCBCCCE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--------cccceeEEE--ECCEEEEEeCCCCCCcccceE
Confidence 56777777743 458888886665433222211 111111222 35567777776 2 357
Q ss_pred EEEEeCCC
Q 003360 308 RIFKLKYE 315 (826)
Q Consensus 308 ~iwd~~~~ 315 (826)
.+||..++
T Consensus 168 ~~yd~~~~ 175 (315)
T 4asc_A 168 CVYDPKKF 175 (315)
T ss_dssp EEEETTTT
T ss_pred EEEeCCCC
Confidence 77887644
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=80.76 E-value=61 Score=34.22 Aligned_cols=143 Identities=15% Similarity=0.177 Sum_probs=75.3
Q ss_pred CCCcEEEEeCCC--CceeeeeecccccccccccCCCCeEEEEEeC--CCC-EEEEE-eC--CCcEEEEEeCCCCCccccc
Q 003360 251 SDGAINFWDVSC--PLFLLILSLKQQSEKDFSLSGIPLTALYYDG--TSR-VLVSG-DQ--SGMVRIFKLKYEPHAIENS 322 (826)
Q Consensus 251 ~DGtVriWD~s~--~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp--~~~-~Lasg-s~--dg~V~iwd~~~~~~~~~~~ 322 (826)
.+|.|.++|... .... .+..... .+.........|++.+ ++. .|.++ .. +.+|.+|++.....
T Consensus 81 ~~G~I~~~d~~~~~~~~~---~l~~~g~-~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~----- 151 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVS---ELEIIGN-TLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK----- 151 (355)
T ss_dssp -CCEEEEEETTSSSCCEE---ECEEECS-SCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT-----
T ss_pred CCCeEEEEecCCCCCceE---EEEccCC-CCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC-----
Confidence 689999999852 2221 2221100 0111123445666655 342 34333 33 45788888874311
Q ss_pred eEEEeecCCCCeEEEEEEEEee--ccCCeEEEEEccCCCEEEEEe-----------------cCCeEEEEecCCCeeEEe
Q 003360 323 FLSFTGSKKGNSHIIHSVKVMK--INGSIISLNMNRNSQHLAVGS-----------------DQGYVYLLDTEGPTVLYQ 383 (826)
Q Consensus 323 ~~~i~~s~~~~~~~~~~~~~~~--~~~~V~~l~~s~~g~~lasGs-----------------~dG~V~vwD~~~~~~l~~ 383 (826)
...+ +.... .-.....+.+.++|.+.++.. ..|.|.-+|...-+.+
T Consensus 152 -----------~~~~--~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~-- 216 (355)
T 3sre_A 152 -----------SLLH--LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV-- 216 (355)
T ss_dssp -----------EEEE--EEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEE--
T ss_pred -----------EEEE--EeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEe--
Confidence 1100 11111 123478899999998777654 1255655665322222
Q ss_pred eecccCCCCCeeEEEEeecccCCCCCcEEEEEE-CCCcEEEEECC
Q 003360 384 KHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSD 427 (826)
Q Consensus 384 ~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs-~Dg~V~iwd~~ 427 (826)
. ..-.....++|+| |+..|+++. ..+.|..|+..
T Consensus 217 ~----~~l~~pNGia~sp------Dg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 217 A----EGFDFANGINISP------DGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp E----EEESSEEEEEECT------TSSEEEEEEGGGTEEEEEEEC
T ss_pred e----cCCcccCcceECC------CCCEEEEEeCCCCeEEEEEEC
Confidence 1 1112356689998 687777665 56789999976
No 320
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=78.65 E-value=64 Score=33.27 Aligned_cols=150 Identities=9% Similarity=-0.054 Sum_probs=87.6
Q ss_pred eCC-CCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEeCCCC
Q 003360 239 HSK-VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS-GDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~-~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Las-gs~dg~V~iwd~~~~~ 316 (826)
|++ .+.++.+-...+.|..++..+..... ..+. ..-.....+++.+.++.|.. -...+.|.++++....
T Consensus 42 ~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-~~~~--------~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 42 FVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-NVVV--------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEGGGTEEEEEETTTTEEEEEETTSSSCCC-EEEE--------ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEeCCCEEEEEECCCCcEEEEEccCCCceE-EEEc--------CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence 665 45677777778889999884432100 0010 01134568899886555544 4456788888876321
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEec--CCeEEEEecCCCeeEEeeecccCCCCCe
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD--QGYVYLLDTEGPTVLYQKHIASDISSGI 394 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~--dG~V~vwD~~~~~~l~~~~~~~~~~~~V 394 (826)
. . ......-.....|++.|.+..|..... .+.|..+++......... ...-...
T Consensus 113 ~----------------~-----~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~---~~~l~~P 168 (318)
T 3sov_A 113 R----------------K-----VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII---NSEIYWP 168 (318)
T ss_dssp C----------------E-----EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE---CSSCSCE
T ss_pred E----------------E-----EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE---ECCCCCc
Confidence 1 0 111111234688999987666766653 578888888653322111 1122345
Q ss_pred eEEEEeecccCCCCCcEEE-EEECCCcEEEEECC
Q 003360 395 VSLQFETCSLQGFEKNFLV-IATKDSSVLVLDSD 427 (826)
Q Consensus 395 ~sl~f~~~~~~~~d~~~l~-sgs~Dg~V~iwd~~ 427 (826)
..|++++. +..|+ +=+..+.|..+|..
T Consensus 169 nglavd~~------~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 169 NGLTLDYE------EQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp EEEEEETT------TTEEEEEETTTTEEEEEETT
T ss_pred cEEEEecc------CCEEEEEECCCCEEEEEcCC
Confidence 77899873 44454 44556789999987
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=78.29 E-value=60 Score=32.67 Aligned_cols=65 Identities=9% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCCCEEEEEECC-----CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEE
Q 003360 241 KVKNLFITGHSD-----GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-----GMVRIF 310 (826)
Q Consensus 241 ~~~~~l~Tgs~D-----GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-----g~V~iw 310 (826)
.++.+++.|+.+ ..+.+||........+..+.. ....-.++.+ ++.+++.|+.+ ..|.+|
T Consensus 158 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--------~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~y 227 (301)
T 2vpj_A 158 ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT--------KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAY 227 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSS--------CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCc--------ccccceEEEE--CCEEEEEeCCCCCcccceEEEE
Confidence 367788888765 458888986666543322211 1111122222 56777788764 457888
Q ss_pred EeCCC
Q 003360 311 KLKYE 315 (826)
Q Consensus 311 d~~~~ 315 (826)
|+.++
T Consensus 228 d~~~~ 232 (301)
T 2vpj_A 228 NIRTD 232 (301)
T ss_dssp ETTTT
T ss_pred eCCCC
Confidence 88743
No 322
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=76.93 E-value=8.6 Score=40.60 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=45.3
Q ss_pred ecCCeEEEEecCCCeeEEeeecccC-CCCCeeEEEEeecccCC---CCCcEEEEEECCCcEEEEECCCCceEEeeec
Q 003360 365 SDQGYVYLLDTEGPTVLYQKHIASD-ISSGIVSLQFETCSLQG---FEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 437 (826)
Q Consensus 365 s~dG~V~vwD~~~~~~l~~~~~~~~-~~~~V~sl~f~~~~~~~---~d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~~ 437 (826)
+.||.|..+|..++...+....... ..+++.. .-.|..... .++..+++|+.+|++..+|..+|+.+..+..
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 6899999999988865544433211 1122221 111110000 0367889999999999999999999988743
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=74.70 E-value=74 Score=31.95 Aligned_cols=64 Identities=8% Similarity=0.183 Sum_probs=37.2
Q ss_pred CCCCEEEEEECC-----CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEE
Q 003360 241 KVKNLFITGHSD-----GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-----GMVRIF 310 (826)
Q Consensus 241 ~~~~~l~Tgs~D-----GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-----g~V~iw 310 (826)
-++.+++.|+.+ ..|.+||........+..+.. ......++.+ ++.+++.|+.+ ..|.+|
T Consensus 205 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--------~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~y 274 (301)
T 2vpj_A 205 LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT--------PRCYVGATVL--RGRLYAIAGYDGNSLLSSIECY 274 (301)
T ss_dssp ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS--------CCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEE
T ss_pred ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC--------cccceeEEEE--CCEEEEEcCcCCCcccccEEEE
Confidence 356788888775 468899997666544322221 1111122222 66777778765 356777
Q ss_pred EeCC
Q 003360 311 KLKY 314 (826)
Q Consensus 311 d~~~ 314 (826)
|..+
T Consensus 275 d~~~ 278 (301)
T 2vpj_A 275 DPII 278 (301)
T ss_dssp ETTT
T ss_pred cCCC
Confidence 7764
No 324
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=69.90 E-value=55 Score=33.02 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=36.1
Q ss_pred CCCEEEEEecC-----CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC-----cEEEEEC
Q 003360 357 NSQHLAVGSDQ-----GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS-----SVLVLDS 426 (826)
Q Consensus 357 ~g~~lasGs~d-----G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg-----~V~iwd~ 426 (826)
++.+++.|+.+ ..+.+||+.+.+-............ .++... ++.+++.|+.++ .|.+||.
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~--~~~~~~-------~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN--AGVCAV-------NGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS--CEEEEE-------TTEEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc--CeEEEE-------CCEEEEECCcCCCcccccEEEEcC
Confidence 56677777664 3688999887764422221111100 111111 366667776553 4788888
Q ss_pred CCCce
Q 003360 427 DNGNM 431 (826)
Q Consensus 427 ~tg~~ 431 (826)
.+.+-
T Consensus 275 ~~~~W 279 (302)
T 2xn4_A 275 TTDKW 279 (302)
T ss_dssp TTTEE
T ss_pred CCCeE
Confidence 76653
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=65.78 E-value=1.6e+02 Score=32.15 Aligned_cols=179 Identities=14% Similarity=0.246 Sum_probs=97.0
Q ss_pred EEEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceeeeeeccccc
Q 003360 198 MKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQS 275 (826)
Q Consensus 198 ~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~ 275 (826)
+-.+|..+.++.-...++.+++......... ......|.- |-.+. .|+-- .+..|.-|++.+.. .+.+.....
T Consensus 71 AIMnP~~~iiALrag~~lQiFnle~K~klks-~~~~e~VvfWkWis~~-~l~lV-T~taVyHWsi~~~s-~P~kvFdR~- 145 (494)
T 1bpo_A 71 AIMNPASKVIALKAGKTLQIFNIEMKSKMKA-HTMTDDVTFWKWISLN-TVALV-TDNAVYHWSMEGES-QPVKMFDRH- 145 (494)
T ss_dssp EEECSSSSCEEEEETTEEEEEETTTTEEEEE-EECSSCCCEEEEEETT-EEEEE-CSSEEEEEESSSSC-CCEEEEECC-
T ss_pred eeeCCCCcEEEEecCCeEEEEchHHhhhhcc-eecCCCceEEEecCCC-eEEEE-cCCeeEEecccCCC-Cchhheecc-
Confidence 3456777777665567788887654322211 011223322 33332 33332 24589999994422 121222110
Q ss_pred ccccccCCCCeEEEEEeCCCCEEEEEe-------CCCcEEEEEeCCCCC----ccc--------------cceEEEeec-
Q 003360 276 EKDFSLSGIPLTALYYDGTSRVLVSGD-------QSGMVRIFKLKYEPH----AIE--------------NSFLSFTGS- 329 (826)
Q Consensus 276 ~~~~~~h~~~V~~l~fsp~~~~Lasgs-------~dg~V~iwd~~~~~~----~~~--------------~~~~~i~~s- 329 (826)
-...+..|..-..+++.++++..+ -.|.+.+|..+++.. .|. ..+.++...
T Consensus 146 ---~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 146 ---SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp ---GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred ---hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEec
Confidence 012235677777788888876533 247888998876621 010 011111111
Q ss_pred CCCCeEEEEEEEEee------------------c---cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeec
Q 003360 330 KKGNSHIIHSVKVMK------------------I---NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 330 ~~~~~~~~~~~~~~~------------------~---~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~ 386 (826)
..|.. +|-+..+. . ..--.++..|+.+..+..-+.-|.|+++|+.+++++|..++
T Consensus 223 ~~g~k--Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 223 QAGGK--LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp TTCCE--EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCcE--EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc
Confidence 11111 11111110 0 22256788888888999999999999999999999987764
No 326
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=65.68 E-value=1.1e+02 Score=30.51 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=36.3
Q ss_pred CCCCEEEEEECC-------CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC-----cEE
Q 003360 241 KVKNLFITGHSD-------GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-----MVR 308 (826)
Q Consensus 241 ~~~~~l~Tgs~D-------GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg-----~V~ 308 (826)
-++.+++.|+.+ ..+.+||........+..+. .....-.++.+ ++.+++.|+.++ .|.
T Consensus 154 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p--------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 223 (302)
T 2xn4_A 154 VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS--------TRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVE 223 (302)
T ss_dssp ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS--------SCCBSCEEEEE--TTEEEEECCBSSSSBCCCEE
T ss_pred ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc--------cccccccEEEE--CCEEEEECCCCCCcccceEE
Confidence 356777777653 35788898666653322222 11111122222 567788887653 577
Q ss_pred EEEeCCC
Q 003360 309 IFKLKYE 315 (826)
Q Consensus 309 iwd~~~~ 315 (826)
+||+.++
T Consensus 224 ~yd~~~~ 230 (302)
T 2xn4_A 224 VYDPTTN 230 (302)
T ss_dssp EEETTTT
T ss_pred EEeCCCC
Confidence 8887643
No 327
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=65.05 E-value=1.4e+02 Score=31.25 Aligned_cols=177 Identities=15% Similarity=0.249 Sum_probs=95.4
Q ss_pred EEeeCCCeEEEecCCcEEEeccCCCceeecccccCCccee--eCCCCCEEEEEECCCcEEEEeCCCC-ceeeeeeccccc
Q 003360 199 KLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCP-LFLLILSLKQQS 275 (826)
Q Consensus 199 ~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~~~h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~-~~~~i~~l~~~~ 275 (826)
-.+|..+.++.-...++.+++......... ......|.- |-... .|+--+ +..|.-|++.+. ....++....
T Consensus 73 IMnP~~~ViALrag~~LQiFnletK~klks-~~~~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~-- 147 (365)
T 2xzh_A 73 IMNPASKVIALKAGKTLQIFNIEMKSKMKA-HTMTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS-- 147 (365)
T ss_dssp EECSSSSEEEEEETTEEEEEETTTTEEEEE-EECSSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCG--
T ss_pred eeCCCccEEEEecCCeEEEechHHhhhhcc-eecCCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecch--
Confidence 347777777665566788887654322211 111223322 43333 333332 358999999442 2111222211
Q ss_pred ccccccCCCCeEEEEEeCCCCEEEEEe-------CCCcEEEEEeCCCCC----cc--------------ccceEEEee-c
Q 003360 276 EKDFSLSGIPLTALYYDGTSRVLVSGD-------QSGMVRIFKLKYEPH----AI--------------ENSFLSFTG-S 329 (826)
Q Consensus 276 ~~~~~~h~~~V~~l~fsp~~~~Lasgs-------~dg~V~iwd~~~~~~----~~--------------~~~~~~i~~-s 329 (826)
...+..|..-..+++.++++..+ -.|.+.+|..+++.. .| +..+.++.. .
T Consensus 148 ----~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 148 ----SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp ----GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred ----hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEec
Confidence 12235677777788888776543 247788998876611 00 001111110 0
Q ss_pred CCCCeEEEEEEEEe------------------ec---cCCeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeec
Q 003360 330 KKGNSHIIHSVKVM------------------KI---NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 330 ~~~~~~~~~~~~~~------------------~~---~~~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~ 386 (826)
..+ .++|-+..+ +. ..---+|..|+-+..+..-+.-|.|+++|+.+++++|..++
T Consensus 224 ~~g--~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrI 299 (365)
T 2xzh_A 224 QAG--GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 299 (365)
T ss_dssp TTE--EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCC--cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEecc
Confidence 111 111111110 00 22256777888888999999999999999999999987765
No 328
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=63.61 E-value=63 Score=33.83 Aligned_cols=74 Identities=14% Similarity=0.216 Sum_probs=44.4
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE-EeeccCCeEEEEEccC---CCE
Q 003360 285 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK-VMKINGSIISLNMNRN---SQH 360 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~-~~~~~~~V~~l~~s~~---g~~ 360 (826)
..+.|+|.|++++++ +..+|.|.+++ . +.. ..+.. +. ..........|+|+|+ +..
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~-~-g~~------~~~~~-----------~~v~~~g~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR-E-GRL------STYAE-----------LSVYHRGESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE-T-TEE------EEEEE-----------CCCCCSTTCSEEEEEECTTTTTSCE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE-C-CCc------cEeec-----------ceEeecCCCCceeEEECCCCCCCCE
Confidence 567999999998554 56679888887 2 111 00000 00 0001234788999998 445
Q ss_pred EEEEec-C-----CeEEEEecCCC
Q 003360 361 LAVGSD-Q-----GYVYLLDTEGP 378 (826)
Q Consensus 361 lasGs~-d-----G~V~vwD~~~~ 378 (826)
|.++.. . +.|..|+....
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~~ 115 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLGE 115 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECSS
T ss_pred EEEEEecCCCCCccEEEEEEeCCC
Confidence 555443 2 67888887654
No 329
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=61.29 E-value=75 Score=33.32 Aligned_cols=75 Identities=9% Similarity=0.056 Sum_probs=43.9
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEE-EeeccCCeEEEEEccC---CC
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK-VMKINGSIISLNMNRN---SQ 359 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~-~~~~~~~V~~l~~s~~---g~ 359 (826)
...+.|+|.|+++ |.++..+|.|++++-. +. ..+.. +. ..........|+++|+ +.
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~-G~----~~~~~--------------~~v~~~g~~g~~gia~~pdf~~~g 88 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISPS-GK----KLVAS--------------FDVANVGEAGLLGLALHPEFPKKS 88 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECSS-CE----EEEEE--------------CCCCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeCC-Cc----eEeec--------------cceeecCCCceeeEEeCCCCCcCC
Confidence 3568999999997 4555667988888622 11 00000 00 0001234788999997 44
Q ss_pred EEEEEec----C----CeEEEEecCCC
Q 003360 360 HLAVGSD----Q----GYVYLLDTEGP 378 (826)
Q Consensus 360 ~lasGs~----d----G~V~vwD~~~~ 378 (826)
.|.+... + ..|..|+....
T Consensus 89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~ 115 (354)
T 3a9g_A 89 WVYLYASYFAEGGHIRNRVIRGRLDGS 115 (354)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECSS
T ss_pred EEEEEEeccCCCCCcceEEEEEEECCC
Confidence 5555443 3 56777877654
No 330
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=60.36 E-value=20 Score=35.24 Aligned_cols=113 Identities=15% Similarity=0.124 Sum_probs=58.6
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
..++.++|+|++.+.++ .+|. ||......... .... +.... +-....++ -.++.|.++|.+.++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~~~--~~W~------~s~t~---IG~~Gw~~-F~a~~fD~~G~LYav 104 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDK--IYKGTPPTHDN--DNWM------GRAKK---IGNGGWNQ-FQFLFFDPNGYLYAV 104 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTE--EEEESCCCSTT--CCHH------HHCEE---EECSCGGG-CSEEEECTTSCEEEE
T ss_pred ccceeEEECCCccEEEE--eCCe--EEEECCCCCCc--cccc------ccccE---eccccccc-ceEEEECCCCCEEEe
Confidence 36779999999987777 6664 67665332110 0000 00000 10001111 477899999987776
Q ss_pred EecCCeEEEEecCCCee---EEee-ecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEE
Q 003360 364 GSDQGYVYLLDTEGPTV---LYQK-HIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 422 (826)
Q Consensus 364 Gs~dG~V~vwD~~~~~~---l~~~-~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~ 422 (826)
.||.|+-++..+... +... .+...-=..+..|.|.| ...|++.+ |+.++
T Consensus 105 --~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-------~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 105 --SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-------NGYLYAVH-GQQFY 157 (236)
T ss_dssp --ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-------TSCEEEEE-TTEEE
T ss_pred --CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-------CceEEEEe-CCcEE
Confidence 669988777532110 0000 00001113467788887 34455555 77654
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=59.83 E-value=37 Score=33.37 Aligned_cols=107 Identities=12% Similarity=0.005 Sum_probs=53.9
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCC-CceeeeeecccccccccccCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCC
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSC-PLFLLILSLKQQSEKDFSLSG-IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 316 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~-~~~~~i~~l~~~~~~~~~~h~-~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~ 316 (826)
|+|++.++++ .+|.+.--+... ... . .-.. ...+-..+ ..-.++.|.|++.+.++ .||.|.-++--++.
T Consensus 48 f~P~G~LYaV--~~G~Ly~~~~~t~~~~-~---W~~s-~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 48 LSPGGELYGV--LNDKIYKGTPPTHDND-N---WMGR-AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD 118 (236)
T ss_dssp ECTTSCEEEE--ETTEEEEESCCCSTTC-C---HHHH-CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred ECCCccEEEE--eCCeEEEECCCCCCcc-c---cccc-ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence 8999998887 667654444421 110 0 0000 00000000 11368999999998888 55866444321111
Q ss_pred CccccceEEEeecCCCCeEEEEEEEEeec-cCCeEEEEEccCCCEEEEEecCCeEE
Q 003360 317 HAIENSFLSFTGSKKGNSHIIHSVKVMKI-NGSIISLNMNRNSQHLAVGSDQGYVY 371 (826)
Q Consensus 317 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-~~~V~~l~~s~~g~~lasGs~dG~V~ 371 (826)
.. .. -.+. .+.... =..+..|.|.|+|.+.|+. ||.++
T Consensus 119 ~~---~W-----l~~a-------~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 119 TD---NW-----IARA-------TEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp TC---CH-----HHHS-------EEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CC---ce-----eccc-------cEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 10 00 0000 111110 1347999999999877776 77743
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=58.21 E-value=1.7e+02 Score=30.04 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=18.3
Q ss_pred cCCCEEEEEecCC------eEEEEecCCCeeEEee
Q 003360 356 RNSQHLAVGSDQG------YVYLLDTEGPTVLYQK 384 (826)
Q Consensus 356 ~~g~~lasGs~dG------~V~vwD~~~~~~l~~~ 384 (826)
-++.+++.|+.++ .|.++++++++.+...
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 3567788888653 3556688888776433
No 333
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.86 E-value=63 Score=39.14 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=34.8
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 348 SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
.|.+++..++..++.+-+.|+++|||++.+++++.+..+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 4777888888889999999999999999999999876653
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=55.30 E-value=1.8e+02 Score=29.28 Aligned_cols=64 Identities=11% Similarity=0.136 Sum_probs=37.0
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEE
Q 003360 242 VKNLFITGHSD-----GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-----GMVRIFK 311 (826)
Q Consensus 242 ~~~~l~Tgs~D-----GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-----g~V~iwd 311 (826)
++.+++.|+.+ ..+.+||........+..+. .....-.++.+ ++.+++.|+.+ ..|.+||
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 237 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN--------TIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYD 237 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS--------SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC--------CccccceEEEE--CCEEEEEeCCCCCCccceEEEEe
Confidence 66788888765 45888888666643322111 11112223333 66777888765 4578888
Q ss_pred eCCC
Q 003360 312 LKYE 315 (826)
Q Consensus 312 ~~~~ 315 (826)
+.++
T Consensus 238 ~~~~ 241 (308)
T 1zgk_A 238 VETE 241 (308)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 7744
No 335
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=53.57 E-value=1.4e+02 Score=31.16 Aligned_cols=30 Identities=17% Similarity=0.003 Sum_probs=23.6
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeC
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~ 313 (826)
...+.|+|.|+++++++--..|.|++++..
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~ 61 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAK 61 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECC
Confidence 467899999999977766558988887654
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=52.42 E-value=4.6e+02 Score=33.23 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=32.2
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeec
Q 003360 349 IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHI 386 (826)
Q Consensus 349 V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~ 386 (826)
..++..|+....+..-+.-|.|.++|+.+++++|..++
T Consensus 261 pv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri 298 (1630)
T 1xi4_A 261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (1630)
T ss_pred ceEEEeccccCEEEEEecCceEEEEecccchhhhhccc
Confidence 45677788788899999999999999999999976654
No 337
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=50.09 E-value=2.1e+02 Score=28.57 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=33.4
Q ss_pred CCCEEEEEec---------CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC-----CcEE
Q 003360 357 NSQHLAVGSD---------QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD-----SSVL 422 (826)
Q Consensus 357 ~g~~lasGs~---------dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D-----g~V~ 422 (826)
++.+++.|+. -..+.+||+.+.+-........... . .++... ++.+++.|+.+ ..+.
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~-~~~~~~-------~~~i~v~GG~~~~~~~~~~~ 219 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK-N-HGLVFV-------KDKIFAVGGQNGLGGLDNVE 219 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB-S-CEEEEE-------TTEEEEECCEETTEEBCCEE
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh-c-ceEEEE-------CCEEEEEeCCCCCCCCceEE
Confidence 5556666653 3447889988775442211111100 0 111111 25566666543 3578
Q ss_pred EEECCCCce
Q 003360 423 VLDSDNGNM 431 (826)
Q Consensus 423 iwd~~tg~~ 431 (826)
+||..+.+-
T Consensus 220 ~yd~~~~~W 228 (306)
T 3ii7_A 220 YYDIKLNEW 228 (306)
T ss_dssp EEETTTTEE
T ss_pred EeeCCCCcE
Confidence 888876643
No 338
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=49.63 E-value=1.7e+02 Score=31.75 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=21.1
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeC
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLK 313 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~ 313 (826)
...+.|+|.|+++++++-...+.|++++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~ 56 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPE 56 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECC
Confidence 366899999999977765444467766543
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=49.03 E-value=1.7e+02 Score=33.74 Aligned_cols=112 Identities=13% Similarity=0.158 Sum_probs=60.0
Q ss_pred CCCEEEEEECCC------cEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEeC
Q 003360 242 VKNLFITGHSDG------AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG--MVRIFKLK 313 (826)
Q Consensus 242 ~~~~l~Tgs~DG------tVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg--~V~iwd~~ 313 (826)
++.+++.|+.++ .+.+||........+..+. .....- +++...++.+++.|+.++ .+.+||..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p--------~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~ 521 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS--------HTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVT 521 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS--------BCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC--------CCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECC
Confidence 778888887653 5778888666643322221 011111 222324788888888765 68888887
Q ss_pred CCCCccccceEEEeecCCCCeEEEEEEEEee-ccCCeEEEEEccC-CCEEEEEec--C-----CeEEEEecCCCe
Q 003360 314 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMK-INGSIISLNMNRN-SQHLAVGSD--Q-----GYVYLLDTEGPT 379 (826)
Q Consensus 314 ~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~~~~V~~l~~s~~-g~~lasGs~--d-----G~V~vwD~~~~~ 379 (826)
++.- ..+.. .+. .. ......++.+... +.+++.|+. + ..+.+||+.+.+
T Consensus 522 t~~W------~~~~~--~g~---------~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 522 EEIF------KDVTP--KDE---------FFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTEE------EECCC--SSG---------GGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCce------EEccC--CCC---------CCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 5421 10000 000 00 0111233444544 667777765 2 358889988776
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=47.06 E-value=2.4e+02 Score=28.85 Aligned_cols=55 Identities=11% Similarity=0.199 Sum_probs=29.8
Q ss_pred CCCCEEEEEEC-C---------CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC
Q 003360 241 KVKNLFITGHS-D---------GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 304 (826)
Q Consensus 241 ~~~~~l~Tgs~-D---------GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d 304 (826)
-++.+++.|+. + ..+.+||........+..+.. .....-.++. .++.+++.|+.+
T Consensus 64 ~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p-------~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 64 IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAP-------MGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp ETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCS-------SCCSSEEEEE--ETTEEEEEECCC
T ss_pred ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCC-------cccccceEEE--ECCEEEEEeCcC
Confidence 35678887776 2 468888886666433221110 0111222222 467788888865
No 341
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=46.52 E-value=2.3e+02 Score=28.16 Aligned_cols=64 Identities=13% Similarity=0.307 Sum_probs=37.3
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEE
Q 003360 242 VKNLFITGHSD-----GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-----GMVRIFK 311 (826)
Q Consensus 242 ~~~~l~Tgs~D-----GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~d-----g~V~iwd 311 (826)
++++++.|+.+ ..+.+||........+..+. .......++.+ ++.+++.|+.+ ..|.+||
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--------~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd 269 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP--------WKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYN 269 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS--------CCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEE
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC--------CCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEc
Confidence 66788887764 35788998666654322222 11122233333 67788888754 4577788
Q ss_pred eCCC
Q 003360 312 LKYE 315 (826)
Q Consensus 312 ~~~~ 315 (826)
..++
T Consensus 270 ~~~~ 273 (306)
T 3ii7_A 270 TETD 273 (306)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 7643
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=44.23 E-value=2.1e+02 Score=31.12 Aligned_cols=62 Identities=6% Similarity=0.034 Sum_probs=32.5
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC---CCEEEEEe
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT---SRVLVSGD 302 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~---~~~Lasgs 302 (826)
|.|+|+++++-...+.|++++........+..+... ............|+|+|+ +..|.++.
T Consensus 34 ~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~--~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 34 WGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEI--VNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp ECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC--CCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcc--ccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 677777776654444677777632332222222210 000001356789999996 55555543
No 343
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=44.17 E-value=2.6e+02 Score=27.97 Aligned_cols=66 Identities=17% Similarity=0.036 Sum_probs=35.1
Q ss_pred CCCEEEEEecC-----CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC-----CcEEEEEC
Q 003360 357 NSQHLAVGSDQ-----GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD-----SSVLVLDS 426 (826)
Q Consensus 357 ~g~~lasGs~d-----G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D-----g~V~iwd~ 426 (826)
++.+++.|+.+ ..+.+||+.+.+-.......... ... ++... ++.+++.|+.+ ..+.+||+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~-~~~~~-------~~~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR-SGA-GVCVL-------HNCIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC-BSC-EEEEE-------TTEEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcc-ccc-eEEEE-------CCEEEEEeCCCCCCccceEEEEeC
Confidence 56677777654 35788888776544221111110 011 11111 35666666654 45888888
Q ss_pred CCCce
Q 003360 427 DNGNM 431 (826)
Q Consensus 427 ~tg~~ 431 (826)
.+.+-
T Consensus 239 ~~~~W 243 (308)
T 1zgk_A 239 ETETW 243 (308)
T ss_dssp TTTEE
T ss_pred CCCcE
Confidence 76653
No 344
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=42.90 E-value=1.7e+02 Score=30.38 Aligned_cols=122 Identities=15% Similarity=0.019 Sum_probs=0.0
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEcc----CCC
Q 003360 284 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR----NSQ 359 (826)
Q Consensus 284 ~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~----~g~ 359 (826)
...+.|+|.|+++.|.++...|.|++++........-..+. -......+....|+++| ++.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~---------------~v~~~g~~g~~gia~~pdf~~~g~ 82 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVP---------------DVWAHGQGGLLDVVLAPDFAQSRR 82 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCC---------------CCCCSTTCSEEEEEECTTHHHHCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCc---------------ccccCCCCCceeEEECCCCCCCCE
Q ss_pred EEEEEec-------CCeEEEEecCCC--------eeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC------
Q 003360 360 HLAVGSD-------QGYVYLLDTEGP--------TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD------ 418 (826)
Q Consensus 360 ~lasGs~-------dG~V~vwD~~~~--------~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D------ 418 (826)
+.++-+. ...|..|++... .++...............+.|.+ |+ .|+++..|
T Consensus 83 lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p------dG-~Lyv~~Gd~~~~~~ 155 (353)
T 2g8s_A 83 IWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG------KG-YLFIALGENNQRPT 155 (353)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS------SS-EEEEEECCTTCGGG
T ss_pred EEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC------CC-cEEEEECCCCCCCc
Q ss_pred --------CcEEEEECC
Q 003360 419 --------SSVLVLDSD 427 (826)
Q Consensus 419 --------g~V~iwd~~ 427 (826)
|.|.-++..
T Consensus 156 ~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 156 AQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp GGCTTSCTTEEEEEETT
T ss_pred cCCCCCCCeEEEEECCC
No 345
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.16 E-value=1.2e+02 Score=36.72 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=26.2
Q ss_pred CCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 408 EKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 408 d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
+..++++.+.|+++|+|++.+|+++.+..
T Consensus 246 ~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 246 TYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 47799999999999999999999998854
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=40.77 E-value=51 Score=34.56 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=46.2
Q ss_pred CEEEEEecCCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEE-ECCCcEEEEECCCCceEEe
Q 003360 359 QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIA-TKDSSVLVLDSDNGNMLST 434 (826)
Q Consensus 359 ~~lasGs~dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sg-s~Dg~V~iwd~~tg~~i~~ 434 (826)
.+|++++.||.|.-+|..+|+.+++.... ...++....- +. ...++..++.. +.||.|+.++..+|.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~-~~--~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~ 82 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQE-PS--RLETYETLIIEPFGDGNIYYFNAHQGLQKLP 82 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCC-SC--TTTSSEEEEECCSTTTEEEEEETTTEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecC-Cc--cccCCcEEEEEECCCCEEEEEECCCCcEEee
Confidence 37999999999999999999999877643 2123322111 10 00123334343 6899999999998855433
No 347
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=38.46 E-value=97 Score=32.36 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=45.1
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEecCCCee--EEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECC------C
Q 003360 348 SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV--LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD------S 419 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~--l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~D------g 419 (826)
....|+|.|+|. |.++..+|.|++++ .++. +...............|+|+|.. . ++..|+++... .
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf--~-~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRF--P-QEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTT--T-TSCEEEEEEEECTTSSEE
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCC--C-CCCEEEEEEecCCCCCcc
Confidence 367899999997 55567779999998 3432 21111111223467889998810 0 14555554432 5
Q ss_pred cEEEEECCCC
Q 003360 420 SVLVLDSDNG 429 (826)
Q Consensus 420 ~V~iwd~~tg 429 (826)
.|..|+...+
T Consensus 106 ~v~r~~~~~~ 115 (352)
T 2ism_A 106 QVVRLRHLGE 115 (352)
T ss_dssp EEEEEEECSS
T ss_pred EEEEEEeCCC
Confidence 6777776643
No 348
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=38.23 E-value=3.2e+02 Score=27.35 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=34.8
Q ss_pred CCCEEEEEECC-------CcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeC------CCcEE
Q 003360 242 VKNLFITGHSD-------GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ------SGMVR 308 (826)
Q Consensus 242 ~~~~l~Tgs~D-------GtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~------dg~V~ 308 (826)
++.+++.|+.+ ..+.+||........+..+... ...| .++. .++.+++.|+. ...+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r~~~----~~~~--~~~~iyv~GG~~~~~~~~~~~~ 178 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK----VYGH----NVIS--HNGMIYCLGGKTDDKKCTNRVF 178 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC----EESC----EEEE--ETTEEEEECCEESSSCBCCCEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc----cccc----EEEE--ECCEEEEEcCCCCCCCccceEE
Confidence 56788888764 2477788866665432222211 0111 1222 35667777764 23577
Q ss_pred EEEeCCC
Q 003360 309 IFKLKYE 315 (826)
Q Consensus 309 iwd~~~~ 315 (826)
+||..++
T Consensus 179 ~yd~~~~ 185 (318)
T 2woz_A 179 IYNPKKG 185 (318)
T ss_dssp EEETTTT
T ss_pred EEcCCCC
Confidence 8887743
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=38.14 E-value=5.1e+02 Score=29.69 Aligned_cols=117 Identities=12% Similarity=0.105 Sum_probs=58.6
Q ss_pred CCCCEEEEEECC----CcEEEEeCCCCceeeee-ecccccccccccCCCCeEEEEEeC-CCCEEEEEeCCC------cEE
Q 003360 241 KVKNLFITGHSD----GAINFWDVSCPLFLLIL-SLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSG------MVR 308 (826)
Q Consensus 241 ~~~~~l~Tgs~D----GtVriWD~s~~~~~~i~-~l~~~~~~~~~~h~~~V~~l~fsp-~~~~Lasgs~dg------~V~ 308 (826)
.++.+++.|+.+ ..+.+||........+. .+... ........- +++..+ ++.+++.|+.++ .+.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~---~~p~~R~~h-s~~~~~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSS---EVPVARMCH-TFTTISRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCS---CCCCCCBSC-EEEEETTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCC---CCCccccce-EEEEEccCCEEEEEcCCCCCCCccccEE
Confidence 566788888764 45778888555543322 11000 000111112 333333 677788887543 466
Q ss_pred EEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEecCC--eEEEEecCCCeeE
Q 003360 309 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG--YVYLLDTEGPTVL 381 (826)
Q Consensus 309 iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs~dG--~V~vwD~~~~~~l 381 (826)
+||..++.-. .+ ........-.+++.-.++.+++.|+.++ .+.+||+.+.+-.
T Consensus 472 ~yd~~t~~W~------~~--------------~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~ 526 (695)
T 2zwa_A 472 IFDMKTREWS------MI--------------KSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK 526 (695)
T ss_dssp EEETTTTEEE------EC--------------CCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE
T ss_pred EEeCCCCcEE------EC--------------CCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE
Confidence 7777643210 00 0000000011222223677888887655 6889999887644
No 350
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=38.11 E-value=3.1e+02 Score=28.59 Aligned_cols=71 Identities=6% Similarity=-0.055 Sum_probs=40.5
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCC---CCEEEEE---eCCCcEEEEEe
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT---SRVLVSG---DQSGMVRIFKL 312 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~---~~~Lasg---s~dg~V~iwd~ 312 (826)
|.|+|+++++--..|.|++++........+..+.. .+.........|+|+|+ +..|.+. ..++.|.-|++
T Consensus 39 ~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~----v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~ 114 (347)
T 3das_A 39 PLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPG----VSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLY 114 (347)
T ss_dssp ECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTT----CCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEB
T ss_pred EcCCCcEEEEEecCCEEEEEECCCCcEeeecccCc----eeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEe
Confidence 77888888877668999999874333222222210 01112357789999996 4555443 23344444454
Q ss_pred C
Q 003360 313 K 313 (826)
Q Consensus 313 ~ 313 (826)
.
T Consensus 115 ~ 115 (347)
T 3das_A 115 D 115 (347)
T ss_dssp C
T ss_pred C
Confidence 4
No 351
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=36.89 E-value=74 Score=39.42 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=26.2
Q ss_pred CCcEEEEEECCCcEEEEECCCCceEEeee
Q 003360 408 EKNFLVIATKDSSVLVLDSDNGNMLSTNL 436 (826)
Q Consensus 408 d~~~l~sgs~Dg~V~iwd~~tg~~i~~~~ 436 (826)
+..++++.+.|+++|||++.+|+++.+..
T Consensus 248 ~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 248 TYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred CccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 46899999999999999999999998854
No 352
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=35.66 E-value=28 Score=30.28 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=40.6
Q ss_pred hHhHHHHHHHHHhhhhccccchhhHHHHhhhh--hHHHHHHHHHHHHhhcc
Q 003360 775 SVAKMAESKLHENSKKLQGINLKTTEMQDTAR--SFSSMAKEVLRIAEHDK 823 (826)
Q Consensus 775 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~--~f~~~a~~~~~~~~~~k 823 (826)
..|..|+.+|.+-.+....|++|-++|+..++ -|..--.+|+++|++-|
T Consensus 34 a~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 34 AQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 56677888899999889999999999988765 48888888888888754
No 353
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.92 E-value=96 Score=38.39 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=33.5
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc
Q 003360 348 SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA 387 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~ 387 (826)
.+.+++..++..++++-+.|+++||||+.+++|+.+..+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 3556667778889999999999999999999999876653
No 354
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=31.97 E-value=3.2e+02 Score=30.78 Aligned_cols=85 Identities=7% Similarity=0.041 Sum_probs=52.7
Q ss_pred CeEEEEEeCCCCEEEEEeC-CCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEE
Q 003360 285 PLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 363 (826)
Q Consensus 285 ~V~~l~fsp~~~~Lasgs~-dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~las 363 (826)
....+.++|||+++++++. +.+|.++++++-.......+. +-.... +......-.....+|.++|....+
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~------~~~~~~---~ae~e~GlGPlHt~Fd~~G~aYTt 394 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLA------DPRDVI---VGEPELGLGPLHTTFDGRGNAYTT 394 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCS------CGGGGE---EECCBCCSCEEEEEECSSSEEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcccc------Ccccce---EeeccCCCcccEEEECCCCceEee
Confidence 4457889999998877655 789999999853110000000 000000 111222334677899999965666
Q ss_pred EecCCeEEEEecCCC
Q 003360 364 GSDQGYVYLLDTEGP 378 (826)
Q Consensus 364 Gs~dG~V~vwD~~~~ 378 (826)
-.-|..|.-|++...
T Consensus 395 lfidSqvvkWni~~a 409 (638)
T 3sbq_A 395 LFIDSQVVKWNMEEA 409 (638)
T ss_dssp ETTTTEEEEEEHHHH
T ss_pred eeecceEEEEeccHH
Confidence 778999999999653
No 355
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=31.33 E-value=4e+02 Score=26.49 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=35.4
Q ss_pred CCCEEEEEec-C-----CeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC-----cEEEEE
Q 003360 357 NSQHLAVGSD-Q-----GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS-----SVLVLD 425 (826)
Q Consensus 357 ~g~~lasGs~-d-----G~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg-----~V~iwd 425 (826)
++.+++.|+. + ..+.+||+.+.+-........... . .++... ++.+++.|+.++ .+.+||
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~-~~~~~~-------~~~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS-L-FGATVH-------DGRIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB-S-CEEEEE-------TTEEEEEEEECSSSEEEEEEEEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh-c-eEEEEE-------CCEEEEEeccCCCCccceEEEEE
Confidence 4556777765 2 358889988765432111111100 0 111111 366677777654 478888
Q ss_pred CCCCceE
Q 003360 426 SDNGNML 432 (826)
Q Consensus 426 ~~tg~~i 432 (826)
..+.+-.
T Consensus 219 ~~~~~W~ 225 (315)
T 4asc_A 219 ITDNKWA 225 (315)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 8766433
No 356
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=30.89 E-value=4.8e+02 Score=27.22 Aligned_cols=238 Identities=10% Similarity=0.154 Sum_probs=119.2
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
.+|..++||-=. ..+++|+|+..+....-+.+ . ..|.-=.|-.+.. |+--+ +..|.-|++..+..
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~----------~-e~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s~- 138 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM----------T-DDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQ- 138 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC----------S-SCEEEEEECSSSE-EEEEE-SSEEEEEESSTTCC-
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceec----------C-CccEEEEecCCCe-EEEEc-CCcEEEEcccCCCC-
Confidence 788888887765 67999999966653111111 1 2444445544433 33332 23588899874211
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe---cC----CeEEEEecCCCeeEEeeecccCCC
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS---DQ----GYVYLLDTEGPTVLYQKHIASDIS 391 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs---~d----G~V~vwD~~~~~~l~~~~~~~~~~ 391 (826)
+.++..........+|..-..+++.++++..+ .+ |.+.+|....+..- ...+|.
T Consensus 139 ---------------P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ----~ieGha 199 (365)
T 2xzh_A 139 ---------------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----PIEGHA 199 (365)
T ss_dssp ---------------CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE----EECCSE
T ss_pred ---------------CceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc----eeeeee
Confidence 11100000000134577777788888766433 23 45566666544211 123433
Q ss_pred CCeeEEEEeecccCCCC--CcEEEEEEC---CCcEEEEECCCC---ce-----EEeeeccCC-CCCcceEEEEecCCCCc
Q 003360 392 SGIVSLQFETCSLQGFE--KNFLVIATK---DSSVLVLDSDNG---NM-----LSTNLIHPK-KPSRALFMQILNGQDGL 457 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d--~~~l~sgs~---Dg~V~iwd~~tg---~~-----i~~~~~~~~-~~~~~lsi~~l~~~~~~ 457 (826)
. +|......+.. ...+..+.. .+.++|.++... .. ...+...+. ...-+++|+..+
T Consensus 200 a-----~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~----- 269 (365)
T 2xzh_A 200 A-----SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE----- 269 (365)
T ss_dssp E-----EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-----
T ss_pred e-----eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc-----
Confidence 2 33332222211 223333332 257888887422 10 000000000 112233333322
Q ss_pred ccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEE
Q 003360 458 ARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLF 537 (826)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~ 537 (826)
.-+.+.++..-+.+++|++. +..+++..++.... .+.+.. .....|++++-
T Consensus 270 ----------------------kygviyviTK~G~ihlyDle-----Tgt~i~~nrIS~d~-iF~ta~-~~~~~Gi~~Vn 320 (365)
T 2xzh_A 270 ----------------------KHDVVFLITKYGYIHLYDLE-----TGTCIYMNRISGET-IFVTAP-HEATAGIIGVN 320 (365)
T ss_dssp ----------------------TTTEEEEEETTSEEEEEETT-----TCCEEEEEECCSSC-EEEEEE-EGGGTEEEEEE
T ss_pred ----------------------cCCEEEEEeCCcEEEEEEcc-----cCcEEEEeccCCCc-eEEecc-cCCCCcEEEEc
Confidence 11345566667899999998 67788877765322 222211 14567888888
Q ss_pred eeceEEEeccCC
Q 003360 538 TSGKFEIRSLPE 549 (826)
Q Consensus 538 ~~G~I~i~slP~ 549 (826)
..|.+---++.+
T Consensus 321 r~GqVl~v~v~~ 332 (365)
T 2xzh_A 321 RKGQVLSVCVEE 332 (365)
T ss_dssp TTCEEEEEEECT
T ss_pred CCCEEEEEEECc
Confidence 999876555443
No 357
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=23.60 E-value=1.2e+02 Score=27.15 Aligned_cols=55 Identities=29% Similarity=0.363 Sum_probs=31.1
Q ss_pred cchHHHHHhhCCCCCCcchHhHHHHH---------HHHHhhhhccccchhhHHHHhhhhhHHHHHHHHH-HHHhhcc
Q 003360 757 GAVDQIKKKYGFSHSGEPSVAKMAES---------KLHENSKKLQGINLKTTEMQDTARSFSSMAKEVL-RIAEHDK 823 (826)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~-~~~~~~k 823 (826)
-+.++|..|.. ||..|- +|.|+.|+-.++-++..| ...+|+.||.|-+ .|||.-|
T Consensus 43 ~SleEIqkKLe---------AAEERRks~Ea~~lk~laekrehe~EvlqKa~E---en~~F~k~aeEkL~~KME~~k 107 (143)
T 3ryc_E 43 PSLEEIQKKLE---------AAEERRKYQEAELLKHLAEKREHEREVIQKAIE---ENNNFIKMAKEKLAQKMESNK 107 (143)
T ss_dssp CCHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 46788888743 222222 344444444444444333 3568999998865 6776543
No 358
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=23.57 E-value=6.1e+02 Score=26.03 Aligned_cols=102 Identities=5% Similarity=0.066 Sum_probs=54.2
Q ss_pred CCEEEEEEeeCCCeEEEecCCcEEEeccCCC-ceeecc--cccCCccee--eCCC----CCEEEEEEC---C----CcEE
Q 003360 193 SSITAMKLITGNSFILSSADEDYSLLAKSVP-PLLDFE--TKLKDGSQS--HSKV----KNLFITGHS---D----GAIN 256 (826)
Q Consensus 193 ~~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~-~~~~~~--~~h~g~V~~--~s~~----~~~l~Tgs~---D----GtVr 256 (826)
..-..++|.++++.+++-.++.|.+++.... .+..+. ..-.++... ++|+ +.++++-+. + +.|.
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 3457889999998666655788877753322 111110 011233333 7776 556665543 3 5666
Q ss_pred EEeCCCC--ce---eeeee-cccccccccccCCCCeEEEEEeCCCCEEEEE
Q 003360 257 FWDVSCP--LF---LLILS-LKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 301 (826)
Q Consensus 257 iWD~s~~--~~---~~i~~-l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasg 301 (826)
.|+.... .+ ..+.. +. .-..| ....|.|.|++.+.++-
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~-----~~~~h--~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIP-----GAYIH--NGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEE-----CCSSC--CCCCEEECTTSCEEEEC
T ss_pred EEEECCCCcCcCccEEEEEcCC-----CCCCc--CCceEEECCCCcEEEEE
Confidence 7776443 11 11111 11 00123 23579999999866653
No 359
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=22.47 E-value=86 Score=25.82 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=42.5
Q ss_pred hHhHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHhhcc
Q 003360 775 SVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHDK 823 (826)
Q Consensus 775 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k 823 (826)
.+....++-+++|.+|+=+=.+|-++|.+-+++.+..|.+..+..++=|
T Consensus 12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~ 60 (91)
T 3hd7_A 12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLK 60 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566688899999999999999999999999999999999887766543
No 360
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=22.13 E-value=9.2e+02 Score=27.52 Aligned_cols=191 Identities=18% Similarity=0.192 Sum_probs=98.6
Q ss_pred CEEEEEEeeCCCeEEEecCCcEEEeccCCCceeecc---cc-cCCccee--eCCCCCEEEEEECCCcEEEEeCCCCceee
Q 003360 194 SITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFE---TK-LKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLL 267 (826)
Q Consensus 194 ~Vt~~~fs~~~~~l~~~~d~~i~~w~~~~~~~~~~~---~~-h~g~V~~--~s~~~~~l~Tgs~DGtVriWD~s~~~~~~ 267 (826)
.|.++.. .+ ..++.+..+-+..++.....+..+. .+ ....|.+ ...++.+.+ |+.+| +..+|........
T Consensus 104 ~i~~i~~-~~-g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~ 179 (758)
T 3ott_A 104 DVRTMAL-QG-DTLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEG 179 (758)
T ss_dssp CEEEEEE-ET-TEEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEE
T ss_pred eEEEEEe-cC-CcEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEE
Confidence 4666643 34 4677766334445554333333220 11 1234555 345666554 55554 6677875444221
Q ss_pred eeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCccccceEEEeecCCCCeEEEEEEEEeeccC
Q 003360 268 ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING 347 (826)
Q Consensus 268 i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~ 347 (826)
. .+.. . .......|.++...+++..|-+|... -|..|+..++.. .. ... ....
T Consensus 180 ~-~~~~--~--~~~~~~~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~~~~------~~--------------~~~-l~~~ 232 (758)
T 3ott_A 180 I-PLPV--H--SSQSNLFVNSLLEDTTRQCVWIGTEG-YLFQYFPSTGQI------KQ--------------TEA-FHNN 232 (758)
T ss_dssp E-CCCC--C--TTCSSCCEEEEEEETTTTEEEEEEEE-EEEEEETTTTEE------EE--------------EEE-EEEE
T ss_pred e-cCCC--c--cccccceeEEEEEECCCCEEEEEECC-CCeEEcCCCCeE------Ee--------------ccC-CCCC
Confidence 1 1110 0 01122458899888877766666644 466677653211 00 100 1123
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEecCCCeeEEeeecc----cCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEE
Q 003360 348 SIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA----SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 423 (826)
Q Consensus 348 ~V~~l~~s~~g~~lasGs~dG~V~vwD~~~~~~l~~~~~~----~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~i 423 (826)
.|.++....+|. |.+|+.+| +.++|..+.......... .-....|.++.... ...|++|+..| +.+
T Consensus 233 ~i~~i~~d~~g~-lWigT~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-------~g~lWiGT~~G-l~~ 302 (758)
T 3ott_A 233 SIKSLALDGNGD-LLAGTDNG-LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ-------EHNIWLGTDYG-ISL 302 (758)
T ss_dssp EEEEEEECTTCC-EEEEETTE-EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT-------TCCEEEEESSS-EEE
T ss_pred eEEEEEEcCCCC-EEEEeCCc-eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC-------CCCEEEEeCCc-ccc
Confidence 488888888886 55667655 678888776543211110 11234577776554 45688898777 555
Q ss_pred EE
Q 003360 424 LD 425 (826)
Q Consensus 424 wd 425 (826)
+.
T Consensus 303 ~~ 304 (758)
T 3ott_A 303 SR 304 (758)
T ss_dssp EC
T ss_pred cc
Confidence 44
No 361
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=21.99 E-value=7e+02 Score=26.07 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred EEEccCCCEEEEEecCCeEEEEec-------CCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCCcEEEE
Q 003360 352 LNMNRNSQHLAVGSDQGYVYLLDT-------EGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 424 (826)
Q Consensus 352 l~~s~~g~~lasGs~dG~V~vwD~-------~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg~V~iw 424 (826)
+.+-++...+++.+.+|.|+=-.+ +.+.-+ ....-.....+..+..... ...|+..++.|.++-+
T Consensus 1 ~dlI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~--~~~~lke~D~l~~~~~~~t------~d~ll~fT~~G~~~~~ 72 (370)
T 3l6v_A 1 MDLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGR--SAASTKEEDFIDQLWLVNT------HDTLLTFTSSGKVFWL 72 (370)
T ss_dssp CCCCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCS--EEEECSCCCCEEEEEEECT------TCEEEEEETTSEEEEE
T ss_pred CCcccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCc--eecccCCCCEEEEEEEecC------CCEEEEEeCCCeEEEE
Q ss_pred E---------CCCCceEEeeeccCCCCCcceEEEEecCCCCcccCccccccccccCCCCCCCCCCCCCEEEEeecCcEEE
Q 003360 425 D---------SDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACA 495 (826)
Q Consensus 425 d---------~~tg~~i~~~~~~~~~~~~~lsi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv 495 (826)
. ...|..+..+ +.......++.+..++ .+.....+++++..+.++-
T Consensus 73 ~~~eip~~~r~a~G~~i~~l-l~L~~~e~Iv~~~~~~------------------------~~~~~~~ll~~T~~G~vKr 127 (370)
T 3l6v_A 73 PVHQLPEAGSNARGRPIINW-IPLESGERVQAVLPVR------------------------EYADNRYVFMATRNGTVKK 127 (370)
T ss_dssp EGGGSCBCCTTSCCEEGGGS-CCCCTTCCEEEEEEES------------------------CCCTTCEEEEEETTSEEEE
T ss_pred EHHHCcCCCcccCCcCHhhc-cCCCCCCEEEEEEEec------------------------cCCCCcEEEEEeCCCeEEE
Q ss_pred EeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEeeceEEEeccCCccccccccccceeecCCCCCCCcccc
Q 003360 496 YSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTL 575 (826)
Q Consensus 496 ~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~G~I~i~slP~L~~l~~~sl~~~~~~~~~~~~~~~~~ 575 (826)
..+........+.+.-.++. ..-....+.......-++++..+|.+-.++..+++++.. ...+.+.
T Consensus 128 t~l~e~~~~~~~G~~ai~L~-~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR-------------~a~GV~~ 193 (370)
T 3l6v_A 128 TPLSEFAFRLARGKIAINLD-EGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR-------------TATGVRG 193 (370)
T ss_dssp EEGGGGCSCCTTCEESSCCC-TTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCT-------------TCCCEEC
T ss_pred eEHHHhhcccCCceEEEEeC-CCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCC-------------CCCCeee
Q ss_pred eeccCCCcEEEEc
Q 003360 576 MCSSWDGELIMVN 588 (826)
Q Consensus 576 ~~~s~~G~i~~~~ 588 (826)
+....+..++...
T Consensus 194 i~L~~~d~Vv~~~ 206 (370)
T 3l6v_A 194 IRLAKGEEVVSLI 206 (370)
T ss_dssp CCCCTTCCEEEEE
T ss_pred EEeCCCCEEEEEE
No 362
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=21.98 E-value=83 Score=27.25 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=36.7
Q ss_pred hHhHHHHHHHHHhhhhccccchhhHHHHhhhh--hHHHHHHHHHHHHhhc
Q 003360 775 SVAKMAESKLHENSKKLQGINLKTTEMQDTAR--SFSSMAKEVLRIAEHD 822 (826)
Q Consensus 775 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~--~f~~~a~~~~~~~~~~ 822 (826)
..|..|...|.++.+.-..|++|-++|+..++ -|..-=++|+++|++=
T Consensus 34 a~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~ 83 (119)
T 2avr_X 34 AQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDA 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 56777888999997777788888888877664 3777777888887753
No 363
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=21.74 E-value=6e+02 Score=25.20 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=34.6
Q ss_pred CCCEEEEEec------CCeEEEEecCCCeeEEeeecccCCCCCeeEEEEeecccCCCCCcEEEEEECCC-----cEEEEE
Q 003360 357 NSQHLAVGSD------QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS-----SVLVLD 425 (826)
Q Consensus 357 ~g~~lasGs~------dG~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f~~~~~~~~d~~~l~sgs~Dg-----~V~iwd 425 (826)
++.+++.|+. -..+.++|+.+.+-........... . .++... ++.+++.|+.++ .+.+||
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~-~~~~~~-------~~~iyv~GG~~~~~~~~~~~~yd 228 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS-M-FGVAIH-------KGKIVIAGGVTEDGLSASVEAFD 228 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB-S-CEEEEE-------TTEEEEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc-c-ceEEEE-------CCEEEEEcCcCCCCccceEEEEE
Confidence 5666677754 2358899988776442221111110 1 111111 356666666432 467888
Q ss_pred CCCCceE
Q 003360 426 SDNGNML 432 (826)
Q Consensus 426 ~~tg~~i 432 (826)
..+.+-.
T Consensus 229 ~~~~~W~ 235 (318)
T 2woz_A 229 LKTNKWE 235 (318)
T ss_dssp TTTCCEE
T ss_pred CCCCeEE
Confidence 8766543
No 364
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.24 E-value=8.2e+02 Score=26.60 Aligned_cols=239 Identities=10% Similarity=0.150 Sum_probs=116.4
Q ss_pred eCCCCCEEEEEECCCcEEEEeCCCCceeeeeecccccccccccCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEeCCCCCc
Q 003360 239 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 318 (826)
Q Consensus 239 ~s~~~~~l~Tgs~DGtVriWD~s~~~~~~i~~l~~~~~~~~~~h~~~V~~l~fsp~~~~Lasgs~dg~V~iwd~~~~~~~ 318 (826)
.+|..++||-=. ..+++|+|+..+....-+. ... .|.-=.|-.+. .|+-- .+..|.-|++..+..
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~----------~~e-~VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~- 137 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHT----------MTD-DVTFWKWISLN-TVALV-TDNAVYHWSMEGESQ- 137 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE----------CSS-CCCEEEEEETT-EEEEE-CSSEEEEEESSSSCC-
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhccee----------cCC-CceEEEecCCC-eEEEE-cCCeeEEecccCCCC-
Confidence 788888777665 6799999996665311111 122 33333443332 33333 234688999874211
Q ss_pred cccceEEEeecCCCCeEEEEEEEEeeccCCeEEEEEccCCCEEEEEe---cC----CeEEEEecCCCeeEEeeecccCCC
Q 003360 319 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS---DQ----GYVYLLDTEGPTVLYQKHIASDIS 391 (826)
Q Consensus 319 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~lasGs---~d----G~V~vwD~~~~~~l~~~~~~~~~~ 391 (826)
+.++...........|..-..+++.++++..+ .+ |.+.+|....+.. +...+|.
T Consensus 138 ---------------P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s----Q~ieGha 198 (494)
T 1bpo_A 138 ---------------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----QPIEGHA 198 (494)
T ss_dssp ---------------CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE----EEECCSE
T ss_pred ---------------chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc----chheeee
Confidence 11100000000134577777888888776433 23 4556666544321 1123443
Q ss_pred CCeeEEEEeecccCCCCCcEEEEEECC---CcEEEEECCCC---c--e---EEeeeccCC-CCCcceEEEEecCCCCccc
Q 003360 392 SGIVSLQFETCSLQGFEKNFLVIATKD---SSVLVLDSDNG---N--M---LSTNLIHPK-KPSRALFMQILNGQDGLAR 459 (826)
Q Consensus 392 ~~V~sl~f~~~~~~~~d~~~l~sgs~D---g~V~iwd~~tg---~--~---i~~~~~~~~-~~~~~lsi~~l~~~~~~~~ 459 (826)
....++..... ......+..+... +.++|.++... . + .......+. ...-.++|+..+
T Consensus 199 a~F~~~~~~g~---~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~------- 268 (494)
T 1bpo_A 199 ASFAQFKMEGN---AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE------- 268 (494)
T ss_dssp EEEEEEECTTC---SSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-------
T ss_pred eeeEEEecCCC---CCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-------
Confidence 33322222110 0012333334432 67888877432 1 0 000000010 112233333322
Q ss_pred CccccccccccCCCCCCCCCCCCCEEEEeecCcEEEEeccccccccceeeeeeecCCCCceeeEeeeeCCceEEEEEEee
Q 003360 460 GANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTS 539 (826)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~se~~irv~sl~~~~~g~~k~~~k~~~~~~~c~~~~~~~~~~~~~lv~~~~~ 539 (826)
.-+.+.++..-+.+++|++. +..+++..++.. .-.+.+.. .....|++++-..
T Consensus 269 --------------------kygviyviTK~G~i~lyDle-----Tgt~i~~nrIs~-~~iF~t~~-~~~~~Gi~~Vnr~ 321 (494)
T 1bpo_A 269 --------------------KHDVVFLITKYGYIHLYDLE-----TGTCIYMNRISG-ETIFVTAP-HEATAGIIGVNRK 321 (494)
T ss_dssp --------------------TTTEEEEEETTSEEEEEETT-----TCCEEEEEECCS-SCEEEEEE-ETTTTEEEEEETT
T ss_pred --------------------cCCEEEEEecCceEEEEecc-----cceeeeeecccC-CceEEecc-cCCCCcEEEEccC
Confidence 11335566666789999998 667777766652 22222211 1456688888888
Q ss_pred ceEEEeccC
Q 003360 540 GKFEIRSLP 548 (826)
Q Consensus 540 G~I~i~slP 548 (826)
|.+---++-
T Consensus 322 GqVl~v~v~ 330 (494)
T 1bpo_A 322 GQVLSVCVE 330 (494)
T ss_dssp CEEEEEEEC
T ss_pred ceEEEEEEc
Confidence 987544443
Done!