Query 003361
Match_columns 826
No_of_seqs 504 out of 2854
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 22:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2253 U1 snRNP complex, subu 100.0 1.2E-66 2.6E-71 583.2 30.6 593 127-821 39-668 (668)
2 PF01480 PWI: PWI domain; Int 99.7 1.2E-18 2.7E-23 152.1 6.1 68 748-815 2-74 (77)
3 smart00311 PWI PWI, domain in 99.7 1.3E-17 2.9E-22 144.5 8.1 71 744-814 3-73 (74)
4 KOG4661 Hsp27-ERE-TATA-binding 99.7 2.8E-16 6E-21 173.7 16.2 82 125-206 402-483 (940)
5 KOG2146 Splicing coactivator S 99.6 7.1E-17 1.5E-21 166.4 2.7 89 730-822 29-120 (354)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 3E-14 6.5E-19 158.3 16.8 83 126-208 267-349 (352)
7 PLN03134 glycine-rich RNA-bind 99.5 2.5E-14 5.5E-19 139.9 11.2 82 126-207 32-113 (144)
8 KOG0121 Nuclear cap-binding pr 99.5 3.4E-14 7.3E-19 131.9 7.0 83 126-208 34-116 (153)
9 KOG0146 RNA-binding protein ET 99.5 5.8E-14 1.3E-18 144.1 8.6 87 118-204 275-361 (371)
10 TIGR01659 sex-lethal sex-letha 99.5 1.3E-12 2.8E-17 145.1 17.8 83 125-207 104-186 (346)
11 KOG0125 Ataxin 2-binding prote 99.4 1E-12 2.2E-17 138.9 13.7 82 125-208 93-174 (376)
12 PF00076 RRM_1: RNA recognitio 99.4 9E-13 2E-17 111.0 9.2 70 131-201 1-70 (70)
13 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 8.3E-13 1.8E-17 146.7 10.9 81 127-207 2-82 (352)
14 KOG0113 U1 small nuclear ribon 99.4 1.4E-12 3.1E-17 136.3 10.2 82 125-206 98-179 (335)
15 KOG0122 Translation initiation 99.4 5E-12 1.1E-16 129.2 12.9 81 127-207 188-268 (270)
16 KOG0145 RNA-binding protein EL 99.3 1E-11 2.2E-16 127.4 12.2 81 127-207 277-357 (360)
17 KOG0126 Predicted RNA-binding 99.3 3.3E-13 7.1E-18 132.2 0.5 79 126-204 33-111 (219)
18 TIGR01645 half-pint poly-U bin 99.3 8.7E-12 1.9E-16 145.9 10.9 81 127-207 203-283 (612)
19 TIGR01645 half-pint poly-U bin 99.3 7.7E-12 1.7E-16 146.3 9.9 80 126-205 105-184 (612)
20 PLN03213 repressor of silencin 99.3 1.5E-11 3.3E-16 135.1 11.2 89 126-220 8-98 (759)
21 PF14259 RRM_6: RNA recognitio 99.3 2E-11 4.4E-16 103.7 9.2 70 131-201 1-70 (70)
22 KOG0149 Predicted RNA-binding 99.3 6E-12 1.3E-16 128.3 6.9 80 125-205 9-88 (247)
23 PLN03120 nucleic acid binding 99.3 1.8E-11 3.9E-16 128.7 10.2 76 128-207 4-79 (260)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.2 5.1E-11 1.1E-15 139.1 14.1 82 126-207 293-374 (509)
25 TIGR01659 sex-lethal sex-letha 99.2 3.1E-11 6.7E-16 134.2 10.4 81 127-207 192-274 (346)
26 KOG4207 Predicted splicing fac 99.2 1.6E-11 3.4E-16 122.6 7.0 81 127-207 12-92 (256)
27 KOG0108 mRNA cleavage and poly 99.2 1.7E-11 3.7E-16 138.4 8.1 82 129-210 19-100 (435)
28 KOG0415 Predicted peptidyl pro 99.2 4.7E-11 1E-15 127.0 10.5 86 125-210 236-321 (479)
29 KOG0127 Nucleolar protein fibr 99.2 4.1E-11 8.8E-16 133.6 10.1 87 126-213 115-201 (678)
30 KOG0117 Heterogeneous nuclear 99.2 5.1E-11 1.1E-15 130.4 10.6 89 126-214 81-171 (506)
31 TIGR01622 SF-CC1 splicing fact 99.2 5.1E-11 1.1E-15 137.3 11.1 80 128-207 186-265 (457)
32 smart00362 RRM_2 RNA recogniti 99.2 9E-11 1.9E-15 97.6 9.6 72 130-203 1-72 (72)
33 KOG0107 Alternative splicing f 99.2 3.5E-11 7.6E-16 117.7 7.7 76 127-207 9-84 (195)
34 KOG0145 RNA-binding protein EL 99.2 1.2E-10 2.7E-15 119.5 11.0 88 125-212 38-125 (360)
35 TIGR01628 PABP-1234 polyadenyl 99.2 1.2E-10 2.5E-15 138.0 12.2 87 126-213 283-369 (562)
36 KOG0148 Apoptosis-promoting RN 99.2 6.1E-11 1.3E-15 122.7 7.9 83 127-209 61-143 (321)
37 KOG0124 Polypyrimidine tract-b 99.2 2.2E-11 4.8E-16 129.7 4.6 79 128-206 113-191 (544)
38 KOG0131 Splicing factor 3b, su 99.1 4.4E-11 9.6E-16 117.6 5.9 79 127-205 8-86 (203)
39 TIGR01628 PABP-1234 polyadenyl 99.1 1.2E-10 2.5E-15 138.1 10.6 77 130-206 2-78 (562)
40 PLN03121 nucleic acid binding 99.1 1.7E-10 3.6E-15 119.7 10.0 75 127-205 4-78 (243)
41 COG0724 RNA-binding proteins ( 99.1 1.6E-10 3.5E-15 120.3 10.0 80 128-207 115-194 (306)
42 KOG0130 RNA-binding protein RB 99.1 8.2E-11 1.8E-15 110.4 6.9 81 126-206 70-150 (170)
43 smart00360 RRM RNA recognition 99.1 2.1E-10 4.5E-15 94.9 8.7 70 133-202 1-70 (71)
44 TIGR01648 hnRNP-R-Q heterogene 99.1 1.5E-10 3.2E-15 135.5 10.5 79 127-206 57-136 (578)
45 TIGR01622 SF-CC1 splicing fact 99.1 2.3E-10 5.1E-15 131.9 11.2 81 125-206 86-166 (457)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.2E-09 2.6E-14 127.1 16.7 78 125-207 272-350 (481)
47 KOG0111 Cyclophilin-type pepti 99.1 4.7E-11 1E-15 120.0 3.8 82 127-208 9-90 (298)
48 KOG0148 Apoptosis-promoting RN 99.0 5.4E-10 1.2E-14 115.8 9.1 77 125-207 161-237 (321)
49 KOG0114 Predicted RNA-binding 99.0 2.1E-09 4.4E-14 97.0 11.5 81 127-210 17-97 (124)
50 cd00590 RRM RRM (RNA recogniti 99.0 1.5E-09 3.2E-14 90.7 9.9 74 130-204 1-74 (74)
51 KOG0144 RNA-binding protein CU 99.0 9.9E-10 2.1E-14 120.0 10.7 81 125-205 421-501 (510)
52 KOG0144 RNA-binding protein CU 99.0 9.1E-10 2E-14 120.3 10.1 88 125-212 31-121 (510)
53 KOG0226 RNA-binding proteins [ 98.9 8.2E-09 1.8E-13 106.4 12.8 90 125-214 187-276 (290)
54 KOG0147 Transcriptional coacti 98.9 1.2E-09 2.7E-14 122.8 6.9 79 127-205 277-355 (549)
55 KOG0127 Nucleolar protein fibr 98.9 3.7E-09 8.1E-14 118.3 10.5 84 127-210 291-380 (678)
56 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.9 3.2E-09 7E-14 123.5 10.3 75 127-207 1-77 (481)
57 TIGR01642 U2AF_lg U2 snRNP aux 98.9 6.1E-09 1.3E-13 121.7 12.1 75 123-204 170-256 (509)
58 TIGR01648 hnRNP-R-Q heterogene 98.9 5.6E-09 1.2E-13 122.4 10.2 74 127-208 232-307 (578)
59 smart00361 RRM_1 RNA recogniti 98.9 7.6E-09 1.6E-13 88.7 8.3 61 142-202 2-69 (70)
60 PF13893 RRM_5: RNA recognitio 98.9 1.2E-08 2.5E-13 83.3 8.8 56 145-205 1-56 (56)
61 KOG0124 Polypyrimidine tract-b 98.9 3.1E-09 6.8E-14 113.6 6.7 95 112-206 187-288 (544)
62 KOG0105 Alternative splicing f 98.8 4.3E-09 9.4E-14 103.7 6.7 79 127-208 5-83 (241)
63 KOG0109 RNA-binding protein LA 98.8 3.1E-09 6.8E-14 111.2 5.6 71 129-207 3-73 (346)
64 KOG4208 Nucleolar RNA-binding 98.8 1.6E-08 3.5E-13 101.8 8.1 84 125-208 46-130 (214)
65 KOG0117 Heterogeneous nuclear 98.7 1.6E-08 3.5E-13 111.2 7.6 74 127-208 258-331 (506)
66 KOG0131 Splicing factor 3b, su 98.7 1.8E-08 3.9E-13 99.5 5.9 80 127-206 95-175 (203)
67 KOG0109 RNA-binding protein LA 98.7 2.1E-08 4.4E-13 105.2 5.2 78 123-208 73-150 (346)
68 KOG4206 Spliceosomal protein s 98.6 5E-08 1.1E-12 99.7 7.4 84 128-214 9-96 (221)
69 KOG4212 RNA-binding protein hn 98.6 8.2E-08 1.8E-12 105.1 8.9 78 127-205 43-121 (608)
70 KOG0123 Polyadenylate-binding 98.6 1.2E-07 2.7E-12 106.3 8.8 75 131-208 79-153 (369)
71 KOG1457 RNA binding protein (c 98.6 4.4E-07 9.5E-12 92.2 11.4 83 126-208 32-118 (284)
72 KOG0110 RNA-binding protein (R 98.6 9.4E-08 2E-12 110.5 7.1 93 125-218 610-702 (725)
73 KOG0146 RNA-binding protein ET 98.5 1.7E-07 3.7E-12 97.2 7.3 83 127-210 18-103 (371)
74 KOG0132 RNA polymerase II C-te 98.5 2E-07 4.4E-12 108.3 7.6 75 128-208 421-495 (894)
75 KOG0151 Predicted splicing reg 98.5 4E-07 8.7E-12 104.9 9.2 85 124-208 170-257 (877)
76 KOG0110 RNA-binding protein (R 98.4 4.2E-07 9.1E-12 105.3 8.2 78 128-206 515-596 (725)
77 KOG0153 Predicted RNA-binding 98.4 4.9E-07 1.1E-11 97.2 8.1 79 123-207 223-302 (377)
78 KOG1548 Transcription elongati 98.4 8.6E-07 1.9E-11 95.3 9.0 82 125-207 131-220 (382)
79 KOG0123 Polyadenylate-binding 98.4 6.8E-07 1.5E-11 100.4 7.8 77 129-211 2-78 (369)
80 KOG4205 RNA-binding protein mu 98.3 3.1E-07 6.7E-12 100.2 4.3 81 127-208 5-85 (311)
81 KOG0533 RRM motif-containing p 98.3 2E-06 4.3E-11 90.6 8.7 82 125-207 80-161 (243)
82 KOG4212 RNA-binding protein hn 98.3 1.5E-06 3.2E-11 95.5 7.2 76 125-205 533-608 (608)
83 KOG0116 RasGAP SH3 binding pro 98.3 3.7E-06 7.9E-11 95.1 10.4 76 127-203 287-362 (419)
84 KOG4454 RNA binding protein (R 98.2 6.4E-07 1.4E-11 90.9 2.6 80 127-208 8-87 (267)
85 KOG4209 Splicing factor RNPS1, 98.2 2.1E-06 4.5E-11 90.5 6.2 80 125-205 98-177 (231)
86 KOG1924 RhoA GTPase effector D 98.2 8.2E-06 1.8E-10 95.1 10.5 19 199-217 722-740 (1102)
87 KOG0120 Splicing factor U2AF, 98.1 2.2E-06 4.7E-11 98.1 5.6 83 125-207 286-368 (500)
88 KOG1924 RhoA GTPase effector D 98.0 1.5E-05 3.2E-10 93.1 9.7 7 100-106 589-595 (1102)
89 KOG4205 RNA-binding protein mu 98.0 6.4E-06 1.4E-10 90.0 5.6 81 127-208 96-176 (311)
90 KOG4849 mRNA cleavage factor I 98.0 9.4E-05 2E-09 79.6 13.9 77 131-219 348-425 (498)
91 KOG4676 Splicing factor, argin 98.0 1.9E-06 4.2E-11 93.6 0.7 65 127-196 150-214 (479)
92 KOG4660 Protein Mei2, essentia 97.9 1.1E-05 2.4E-10 91.8 5.7 72 125-201 72-143 (549)
93 PF04059 RRM_2: RNA recognitio 97.9 6.6E-05 1.4E-09 68.6 9.6 77 129-205 2-84 (97)
94 KOG0106 Alternative splicing f 97.9 8E-06 1.7E-10 84.4 4.1 71 129-207 2-72 (216)
95 KOG1190 Polypyrimidine tract-b 97.7 0.00038 8.2E-09 76.7 12.0 76 128-208 297-373 (492)
96 KOG2416 Acinus (induces apopto 97.7 0.00011 2.4E-09 84.0 8.0 78 124-207 440-521 (718)
97 KOG1457 RNA binding protein (c 97.6 0.00021 4.5E-09 73.2 8.1 67 125-195 207-273 (284)
98 KOG1995 Conserved Zn-finger pr 97.5 0.00019 4E-09 78.4 7.3 83 126-208 64-154 (351)
99 KOG1029 Endocytic adaptor prot 97.5 0.028 6.1E-07 66.5 24.4 12 293-304 257-268 (1118)
100 KOG0147 Transcriptional coacti 97.5 7.2E-05 1.6E-09 85.1 3.3 83 125-208 176-258 (549)
101 KOG2253 U1 snRNP complex, subu 97.4 0.0061 1.3E-07 71.3 18.3 34 584-618 514-547 (668)
102 KOG4307 RNA binding protein RB 97.4 0.007 1.5E-07 70.7 18.3 77 127-204 866-943 (944)
103 PF11608 Limkain-b1: Limkain b 97.3 0.00059 1.3E-08 60.2 6.7 70 129-208 3-77 (90)
104 KOG1456 Heterogeneous nuclear 97.1 0.011 2.4E-07 64.8 15.0 76 125-205 284-360 (494)
105 KOG2314 Translation initiation 97.1 0.0017 3.6E-08 74.2 9.0 79 126-205 56-141 (698)
106 KOG4210 Nuclear localization s 97.0 0.00031 6.7E-09 76.5 2.5 81 127-208 183-264 (285)
107 KOG4849 mRNA cleavage factor I 97.0 0.0019 4E-08 69.9 8.2 78 126-203 78-157 (498)
108 KOG4211 Splicing factor hnRNP- 97.0 0.0014 3E-08 74.2 7.3 75 127-205 9-83 (510)
109 KOG4206 Spliceosomal protein s 97.0 0.0028 6.1E-08 65.5 9.0 77 125-206 143-220 (221)
110 PF08777 RRM_3: RNA binding mo 97.0 0.0037 8.1E-08 58.1 8.5 86 128-219 1-93 (105)
111 KOG4307 RNA binding protein RB 96.9 0.012 2.6E-07 68.8 14.0 77 127-204 433-510 (944)
112 KOG3152 TBP-binding protein, a 96.9 0.00058 1.3E-08 71.4 3.0 89 127-215 73-174 (278)
113 COG5175 MOT2 Transcriptional r 96.7 0.0037 7.9E-08 67.5 7.0 88 128-217 114-210 (480)
114 KOG0106 Alternative splicing f 96.5 0.0023 5.1E-08 66.4 4.4 70 125-202 96-165 (216)
115 KOG1855 Predicted RNA-binding 96.3 0.0037 8E-08 69.6 4.3 78 118-195 221-311 (484)
116 KOG4211 Splicing factor hnRNP- 96.1 0.017 3.6E-07 65.6 8.2 75 127-203 102-177 (510)
117 KOG0129 Predicted RNA-binding 96.0 0.013 2.7E-07 67.0 7.0 64 126-189 368-432 (520)
118 KOG1548 Transcription elongati 95.9 0.019 4.2E-07 62.6 7.3 80 126-209 263-353 (382)
119 PF05172 Nup35_RRM: Nup53/35/4 95.7 0.028 6.1E-07 51.8 6.5 79 128-208 6-92 (100)
120 KOG1190 Polypyrimidine tract-b 95.6 0.023 4.9E-07 63.2 6.5 80 125-208 411-491 (492)
121 PF08952 DUF1866: Domain of un 95.5 0.056 1.2E-06 52.9 8.2 70 127-205 26-104 (146)
122 KOG1365 RNA-binding protein Fu 95.4 0.034 7.4E-07 61.2 6.8 76 127-203 279-357 (508)
123 KOG0128 RNA-binding protein SA 95.0 0.0096 2.1E-07 71.3 1.3 79 128-207 736-814 (881)
124 KOG0120 Splicing factor U2AF, 95.0 0.062 1.3E-06 62.3 7.7 64 144-207 425-491 (500)
125 KOG4676 Splicing factor, argin 94.7 0.05 1.1E-06 60.2 5.9 82 128-209 7-91 (479)
126 KOG0112 Large RNA-binding prot 94.5 0.074 1.6E-06 64.3 7.0 81 125-211 452-534 (975)
127 KOG0128 RNA-binding protein SA 94.3 0.006 1.3E-07 73.0 -2.4 70 127-196 666-735 (881)
128 PF14605 Nup35_RRM_2: Nup53/35 94.2 0.095 2.1E-06 42.6 5.1 52 129-187 2-53 (53)
129 KOG0129 Predicted RNA-binding 94.1 0.87 1.9E-05 52.6 14.0 77 127-206 258-339 (520)
130 KOG1996 mRNA splicing factor [ 93.4 0.19 4.2E-06 53.8 6.8 63 143-205 301-364 (378)
131 KOG0115 RNA-binding protein p5 93.2 0.08 1.7E-06 55.9 3.7 63 128-191 31-93 (275)
132 KOG1456 Heterogeneous nuclear 93.2 0.24 5.1E-06 54.8 7.3 73 133-210 127-201 (494)
133 KOG2193 IGF-II mRNA-binding pr 93.2 0.11 2.5E-06 57.9 5.0 76 129-211 2-79 (584)
134 KOG0105 Alternative splicing f 93.0 0.43 9.3E-06 48.2 8.3 63 127-196 114-176 (241)
135 KOG4285 Mitotic phosphoprotein 92.8 2.7 5.8E-05 45.7 14.3 67 129-203 198-265 (350)
136 KOG1029 Endocytic adaptor prot 92.5 2.3 5E-05 51.2 14.5 7 501-507 413-419 (1118)
137 KOG1365 RNA-binding protein Fu 92.1 0.25 5.4E-06 54.7 5.8 79 128-220 161-243 (508)
138 KOG1923 Rac1 GTPase effector F 91.8 0.56 1.2E-05 56.3 8.6 6 145-150 406-411 (830)
139 PTZ00266 NIMA-related protein 91.8 0.83 1.8E-05 57.9 10.6 19 724-742 874-892 (1021)
140 KOG4574 RNA-binding protein (c 90.8 0.55 1.2E-05 56.8 7.3 75 128-208 298-374 (1007)
141 KOG0112 Large RNA-binding prot 90.8 0.061 1.3E-06 65.0 -0.5 79 126-205 370-448 (975)
142 KOG2068 MOT2 transcription fac 90.3 0.13 2.8E-06 56.3 1.5 87 128-217 77-170 (327)
143 PF15023 DUF4523: Protein of u 88.8 1.4 3E-05 43.0 7.0 75 125-207 83-161 (166)
144 KOG2591 c-Mpl binding protein, 86.9 5.6 0.00012 46.5 11.5 70 126-202 173-246 (684)
145 KOG4661 Hsp27-ERE-TATA-binding 86.6 6.4 0.00014 46.0 11.7 32 301-332 548-579 (940)
146 PF08675 RNA_bind: RNA binding 86.3 2.2 4.7E-05 38.1 6.2 56 128-191 8-63 (87)
147 KOG4660 Protein Mei2, essentia 85.9 1.4 3.1E-05 51.2 6.3 66 152-217 413-484 (549)
148 PF04847 Calcipressin: Calcipr 85.7 1.8 4E-05 44.3 6.3 61 142-208 9-71 (184)
149 PF10309 DUF2414: Protein of u 84.6 3.6 7.7E-05 34.8 6.4 55 128-190 5-62 (62)
150 KOG2202 U2 snRNP splicing fact 82.9 0.71 1.5E-05 49.0 2.0 63 145-208 85-148 (260)
151 PF03467 Smg4_UPF3: Smg-4/UPF3 82.7 1.8 3.9E-05 44.1 4.8 81 127-207 6-97 (176)
152 KOG2135 Proteins containing th 82.5 0.71 1.5E-05 52.7 1.9 74 128-208 372-446 (526)
153 TIGR03687 pupylate_cterm ubiqu 80.8 2.3 4.9E-05 30.9 3.3 24 782-805 4-27 (33)
154 PF03880 DbpA: DbpA RNA bindin 79.1 8 0.00017 33.5 6.9 59 138-205 11-74 (74)
155 KOG4210 Nuclear localization s 75.8 2.1 4.6E-05 46.9 3.0 82 127-208 87-168 (285)
156 PF07576 BRAP2: BRCA1-associat 75.0 21 0.00045 33.6 8.9 67 128-196 13-80 (110)
157 KOG4364 Chromatin assembly fac 71.9 1.1E+02 0.0024 37.1 15.5 9 179-187 81-89 (811)
158 PF11517 Nab2: Nuclear abundan 70.9 22 0.00047 32.7 7.5 74 746-819 8-83 (107)
159 KOG1925 Rac1 GTPase effector F 69.8 11 0.00025 43.5 6.8 27 125-151 303-329 (817)
160 KOG0226 RNA-binding proteins [ 66.8 19 0.00041 38.6 7.3 71 130-201 98-171 (290)
161 KOG2318 Uncharacterized conser 65.5 21 0.00046 42.2 8.1 77 125-201 171-299 (650)
162 COG5178 PRP8 U5 snRNP spliceos 64.8 6.5 0.00014 49.4 4.0 32 127-158 71-102 (2365)
163 KOG0804 Cytoplasmic Zn-finger 63.0 19 0.0004 41.5 6.8 67 128-196 74-141 (493)
164 PF03276 Gag_spuma: Spumavirus 61.9 22 0.00048 41.8 7.4 12 176-187 326-337 (582)
165 KOG2375 Protein interacting wi 61.7 32 0.0007 42.3 9.0 14 6-19 544-557 (756)
166 PF11767 SET_assoc: Histone ly 61.2 27 0.00059 29.9 6.0 55 139-202 11-65 (66)
167 KOG1984 Vesicle coat complex C 58.6 52 0.0011 41.0 9.9 25 751-776 970-998 (1007)
168 PF11600 CAF-1_p150: Chromatin 57.3 2.5E+02 0.0055 29.4 15.9 10 502-511 163-172 (216)
169 KOG0162 Myosin class I heavy c 55.3 74 0.0016 38.9 10.2 9 150-158 1070-1078(1106)
170 KOG3671 Actin regulatory prote 55.0 1.2E+02 0.0027 35.6 11.6 30 129-158 482-511 (569)
171 PHA03378 EBNA-3B; Provisional 54.5 1.1E+02 0.0023 37.3 11.2 9 141-149 821-829 (991)
172 PF05639 Pup: Pup-like protein 52.7 5.4 0.00012 34.3 0.4 24 781-804 39-62 (69)
173 KOG3702 Nuclear polyadenylated 52.3 16 0.00035 43.7 4.3 63 748-810 22-84 (681)
174 KOG2888 Putative RNA binding p 51.9 9.7 0.00021 41.9 2.2 20 199-218 162-181 (453)
175 KOG1984 Vesicle coat complex C 50.6 77 0.0017 39.6 9.6 11 197-207 358-368 (1007)
176 KOG0307 Vesicle coat complex C 49.2 1.2E+02 0.0026 38.8 11.2 12 142-153 952-963 (1049)
177 KOG1985 Vesicle coat complex C 44.0 1E+02 0.0022 38.3 9.2 7 174-180 231-237 (887)
178 KOG0151 Predicted splicing reg 42.6 7.5 0.00016 46.7 -0.3 7 210-216 546-552 (877)
179 KOG4019 Calcineurin-mediated s 41.9 21 0.00045 36.5 2.7 76 127-208 9-90 (193)
180 COG5180 PBP1 Protein interacti 41.1 86 0.0019 36.4 7.6 7 132-138 604-610 (654)
181 cd07354 HN_L-delphilin-R1_like 40.1 55 0.0012 29.1 4.6 49 755-804 9-60 (80)
182 KOG4454 RNA binding protein (R 40.1 7.6 0.00017 40.6 -0.7 77 125-202 77-157 (267)
183 KOG4246 Predicted DNA-binding 38.0 12 0.00026 45.7 0.4 10 127-136 144-153 (1194)
184 KOG2295 C2H2 Zn-finger protein 37.4 6.3 0.00014 46.1 -1.9 70 128-197 231-300 (648)
185 PHA03378 EBNA-3B; Provisional 36.6 2.1E+02 0.0046 34.9 10.1 7 8-14 668-674 (991)
186 KOG3938 RGS-GAIP interacting p 35.2 45 0.00098 36.0 4.0 57 753-809 263-322 (334)
187 KOG2891 Surface glycoprotein [ 34.6 6.5E+02 0.014 27.5 13.5 8 172-179 77-84 (445)
188 KOG4246 Predicted DNA-binding 33.6 18 0.0004 44.2 1.0 8 169-176 157-164 (1194)
189 KOG2135 Proteins containing th 33.2 47 0.001 38.5 4.0 62 748-809 7-72 (526)
190 KOG4410 5-formyltetrahydrofola 33.1 1.3E+02 0.0028 32.9 7.0 50 127-182 329-379 (396)
191 PRK14950 DNA polymerase III su 32.0 1.7E+02 0.0036 35.6 8.8 13 193-205 496-508 (585)
192 PF09707 Cas_Cas2CT1978: CRISP 29.4 74 0.0016 28.7 3.9 48 128-178 25-72 (86)
193 KOG4592 Uncharacterized conser 29.2 85 0.0018 37.7 5.3 15 24-38 122-136 (728)
194 COG0724 RNA-binding proteins ( 28.9 72 0.0016 32.6 4.4 65 125-189 222-286 (306)
195 PF13797 Post_transc_reg: Post 28.4 1.4E+02 0.003 27.0 5.5 58 746-803 5-67 (87)
196 PF15236 CCDC66: Coiled-coil d 28.2 6.3E+02 0.014 25.5 10.6 80 428-520 47-135 (157)
197 KOG0917 Uncharacterized conser 28.1 6E+02 0.013 27.8 10.9 10 15-24 151-160 (338)
198 PF02607 B12-binding_2: B12 bi 27.2 1.6E+02 0.0035 25.1 5.7 51 752-807 3-54 (79)
199 KOG4008 rRNA processing protei 26.6 1.7E+02 0.0036 31.4 6.3 34 125-158 37-70 (261)
200 TIGR01795 CM_mono_cladeE monof 26.2 2.1E+02 0.0045 26.1 6.3 39 784-822 51-91 (94)
201 COG5178 PRP8 U5 snRNP spliceos 25.8 61 0.0013 41.4 3.5 11 766-776 1030-1040(2365)
202 PF15473 PCNP: PEST, proteolyt 25.7 26 0.00056 34.6 0.3 18 585-602 88-105 (150)
203 PF11671 Apis_Csd: Complementa 24.9 52 0.0011 31.7 2.2 8 442-449 38-45 (146)
204 PRK11558 putative ssRNA endonu 24.9 85 0.0019 29.0 3.5 50 128-180 27-76 (97)
205 KOG3161 Predicted E3 ubiquitin 24.5 3.1E+02 0.0068 33.4 8.7 10 126-135 596-605 (861)
206 KOG1985 Vesicle coat complex C 24.1 3.7E+02 0.0081 33.7 9.5 10 420-429 529-538 (887)
207 KOG2193 IGF-II mRNA-binding pr 24.0 5.9 0.00013 44.9 -4.9 76 127-205 79-154 (584)
208 PF08926 DUF1908: Domain of un 22.3 1.8E+02 0.0038 31.8 5.8 28 784-811 190-224 (282)
209 KOG1881 Anion exchanger adapto 22.1 4.3E+02 0.0093 32.8 9.4 47 131-178 179-225 (793)
210 KOG2891 Surface glycoprotein [ 21.8 1.1E+03 0.023 25.9 14.4 34 128-161 149-194 (445)
211 KOG0670 U4/U6-associated splic 21.6 23 0.0005 41.8 -0.9 23 482-504 270-292 (752)
212 KOG1925 Rac1 GTPase effector F 21.5 2.1E+02 0.0045 33.7 6.4 11 611-621 752-762 (817)
213 cd07347 harmonin_N_like N-term 21.3 3.1E+02 0.0068 24.3 6.2 60 751-810 5-64 (78)
214 PF15208 Rab15_effector: Rab15 20.5 87 0.0019 32.7 2.9 25 738-768 21-45 (236)
215 KOG4483 Uncharacterized conser 20.1 2.2E+02 0.0048 32.6 6.1 56 127-189 390-446 (528)
No 1
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-66 Score=583.20 Aligned_cols=593 Identities=32% Similarity=0.485 Sum_probs=352.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+..+||||||...+....+..++..||.|.+|+++. ||||.|..+....+|+..|+-..++|..|.++++.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 578999999999999999999999999999998754 99999999999999999999999999999998772
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhcccCCcccccccccccCCCCCCCC---------ccccCcCCCCCCCCCCcCCCcch
Q 003361 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE---------NLKDNETGNKESHDPTNFGVVTE 277 (826)
Q Consensus 207 ~~kk~le~~k~kk~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e---------~~~dgd~~~~~~~ev~~~~~~~e 277 (826)
.+...-+.++... ......|.++.+ ....++-..++++.+.+...++.
T Consensus 110 q~~~n~~k~~~~~-----------------------~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~ 166 (668)
T KOG2253|consen 110 QTIENADKEKSIA-----------------------NKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAASRR 166 (668)
T ss_pred hhhcCccccccch-----------------------hhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhhhh
Confidence 2211111100000 001111111110 00111111222333333333333
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccccccchhhhcccccccccccccc
Q 003361 278 EDRKADQEALEKLTCMVEERLKTNPLPPPPPQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASD 357 (826)
Q Consensus 278 ed~~~d~~~~ek~e~~~eer~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~re 357 (826)
....+|...++.+...+++.... +..+.+..+ +.....++....+.++ + +.+
T Consensus 167 ~~~e~d~h~~e~~~~~~~s~~~~----~~~~~~~~~-~~e~~~~s~~~~s~td---------s----------~~~---- 218 (668)
T KOG2253|consen 167 QIAEADDHCLELEKTETESNSAL----SKEAESKKS-PFEDTKDSKRSFSSTD---------S----------GSE---- 218 (668)
T ss_pred hhHHHHHHHHHHHHhhccccccc----CcccccccC-chhhhchhhhhhcccC---------c----------ccc----
Confidence 34444444444444433332221 111111000 0000000000000000 0 000
Q ss_pred CCCCCCCCCCCccccc-ccccchhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 003361 358 HDRPETSSPDRSRVHD-RRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREK 436 (826)
Q Consensus 358 ~~r~~~~~~~rsr~r~-rr~r~r~r~r~r~~~re~~r~~r~reRer~r~~r~~~~r~~e~E~~y~er~r~we~rER~r~~ 436 (826)
. +.... +|.++. .+++.+.+.+.|...+.+.+.+.....+..+++|....+..++|++|+.|++.|+.||+.+++
T Consensus 219 -~--d~~~~-~s~~~n~~rd~sr~~~r~R~~~r~Re~~e~~ed~~~~re~r~~~~~~~~~E~Ayq~rl~~we~Rer~~~K 294 (668)
T KOG2253|consen 219 -S--DSAEV-NSSSLNYCRDRSRFDRRSRNDRRIRERLEKNEDSDEYREDRAATIKSVDPEKAYQTRLVFWEIREQTKEK 294 (668)
T ss_pred -c--hhhhh-cccccccchhhccchhhhHHHHHHHHHhhhccchHHHHHhhhhhhhccChhHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 011111 112222222222222222222222233556677888899999999999999999999999965
Q ss_pred HHHHHHHHhHHHH------HHHHHHhhhhccchhhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003361 437 ERQYEKEKEKERE------RKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADEVREEEEIAVAKRRAEE 510 (826)
Q Consensus 437 ~re~ekerere~e------r~r~~e~~~d~dddr~d~rk~~r~~~~~~R~~~r~rE~e~d~~dR~rE~eE~~e~~rr~~e 510 (826)
.+++|+.+|..+. .+++++|++||||++++ .+||++++|..|++++.+|+|+|.+||.+|++|++|+||+..+
T Consensus 295 e~eke~~ke~~r~~~~~ke~kr~k~~~ed~DD~rdd-~~y~r~s~l~~r~r~~~re~Ead~~dR~qeqee~~E~Kr~~~~ 373 (668)
T KOG2253|consen 295 EREKERLKEKSRQYKREKEAKRLKEFLEDYDDERDD-PKYYRGSALQERLRDREREAEADRRDRHQEQEELEEIKRRHSE 373 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcchhhhh-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 5555444444432 45888999999999976 6999999999999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCc---------ccccccccCCCCCCCCCCCCCCCC----C----cccccccccCCCccc
Q 003361 511 EQLQQQQRDALKLLSDNAVNGSL---------AEESAVESKGDPSSQNGNGDESTN----V----PIAASDMRQSGNVPA 573 (826)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~ 573 (826)
+..+.....+...+......... .++....+....-+...+...++- . ..-+...-.-..+|.
T Consensus 374 ~~~~~~~~e~~r~~~~~~~~~~~~~~~a~~ke~e~~~~~~~~q~~~e~a~~~~~~~eee~~s~r~~~~~d~~~~i~~~ps 453 (668)
T KOG2253|consen 374 EEAEDPSAEEERNMEEEEALDEEEDDEAVRKEPEERDLEESHQRLGESANQEHSNDEEEIKSQRDDYKPDENDHISHAPS 453 (668)
T ss_pred hcccccchHHHHHHhhhhhhcchhhHHHHhhCcccccCccccchHHhhhhhccccchhhcccchhhhhhhhhhhhhcCch
Confidence 64322211111111111000000 000000000000000000000000 0 000001112334677
Q ss_pred ccccccccCCCCccccCccCCCCCCcchhhhccCCCcccccCChHHHhhhcCCCCCCCCCchHHHHHHHHHhcccCccch
Q 003361 574 RKLGFGLVGSGKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEE 653 (826)
Q Consensus 574 ~k~~~~~~~~~kr~~v~~vf~~~dde~~~~~~~kr~lvpi~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee 653 (826)
..+++|+++++.+..++.+|-.-+...++....+..++||.|+.....+. |+..+.+..++. -+..+
T Consensus 454 ~~~~s~~~~~n~~~~~~~~~~~~~e~~~~es~n~~~n~p~~~~~~~q~~~-----g~sa~~~~i~~k---k~~~~----- 520 (668)
T KOG2253|consen 454 ASLASGLVDANDRDSSPRGFKERHEREDDESLNKKINRPILASIQNQDEI-----GPSASPIPIAKK---KLPET----- 520 (668)
T ss_pred hhhhhhccCCCCCCcccccccccccCcchhhhcccccccccccccccccc-----cCCCCccccccc---cCCCc-----
Confidence 77888988888899999998876665556677788999999987543332 222211111110 00011
Q ss_pred hchHHHhhhhhccccccccccccCccccchhhhhhhhhhcccccc----cccccccccCchhhhhhHHHHhhhcCCCCcc
Q 003361 654 KSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRD----REHGLDKVKTPDNKKLLDAKQLIDMIPKTKE 729 (826)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~ip~~k~ 729 (826)
+-...+. ++|.+-+.++ ++.+.+.+ +.|+. .+.+ -|.+++++||.+||++|+
T Consensus 521 ----------------~v~~~~~-d~Dk~v~~~k---k~vp~dyd~n~~~~~~~---~~nd-eK~~~~ksLI~tIP~~ke 576 (668)
T KOG2253|consen 521 ----------------GVFREDD-DEDKNVHEKK---KLVPLDYDRNQARAHSG---ESND-EKRKRIKSLIETIPTEKE 576 (668)
T ss_pred ----------------ccccccC-Ccccccchhh---hcccccCChhhcccccC---Ccch-hHHHHHHhhcccCCcchH
Confidence 0000011 1121112221 23333332 22222 2223 133479999999999999
Q ss_pred chhceeccccccchhhHhhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 003361 730 ELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRML 809 (826)
Q Consensus 730 ~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~klWr~l 809 (826)
+||+|+|+|+.||..+|+++|+|||+|||+||||++|++||||||++|+.|.+|++||++|.+||||||++||+||||||
T Consensus 577 eLf~~pidw~~ld~~lm~~rirpwV~KKIiEflGeeE~tLVdFI~s~i~~h~~~q~iL~dl~~ilDEdAE~FV~KmWRlL 656 (668)
T KOG2253|consen 577 ELFAYPIDWDELDSILMNERIRPWVNKKIIEFLGEEEDTLVDFICSNIRQHSSPQQILDDLAMILDEDAEVFVVKMWRLL 656 (668)
T ss_pred HHhhCcccHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccc
Q 003361 810 IFEIKKVETGLA 821 (826)
Q Consensus 810 i~e~~~~~~g~~ 821 (826)
|||+.+++.||+
T Consensus 657 iyel~ar~~g~~ 668 (668)
T KOG2253|consen 657 IYELGARKLGLT 668 (668)
T ss_pred HHHhhhhhccCC
Confidence 999999999985
No 2
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=99.75 E-value=1.2e-18 Score=152.11 Aligned_cols=68 Identities=46% Similarity=0.808 Sum_probs=60.9
Q ss_pred hhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccC-----CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 003361 748 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV-----KASQMLELLQTILDDEAEMFVLKMWRMLIFEIKK 815 (826)
Q Consensus 748 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~-----~p~~l~~~l~~~lde~a~~fv~klWr~li~e~~~ 815 (826)
++|||||.+||+||||.+|++||+||+++|..+. +|+.|+++|++||+++|..||.+||++||+.+..
T Consensus 2 ~~lk~WI~~kl~e~lG~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv~~Lw~~l~~~q~~ 74 (77)
T PF01480_consen 2 EKLKPWISKKLEEILGFEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFVDELWRLLISAQSS 74 (77)
T ss_dssp HHHHHHHHHHHHHHHSS--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999887 9999999999999999999999999999987643
No 3
>smart00311 PWI PWI, domain in splicing factors.
Probab=99.72 E-value=1.3e-17 Score=144.46 Aligned_cols=71 Identities=42% Similarity=0.718 Sum_probs=67.7
Q ss_pred hhHhhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003361 744 HELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 814 (826)
Q Consensus 744 ~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~klWr~li~e~~ 814 (826)
.+..++|+|||+++|++|||++|++||+||+++|++|.+|+.++.+|..+++++|+.||.+||+||||++.
T Consensus 3 kv~~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~~f~da~~Fv~~Lw~~l~~~~~ 73 (74)
T smart00311 3 KLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQHKGPQAKLLQINLTGFEDAEEFVDKLWRLLIFELK 73 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCChHHHHHHHHhhcchhHHHHHHHHHHHHHHhhc
Confidence 45668899999999999999999999999999999999999999999999999999999999999999875
No 4
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.69 E-value=2.8e-16 Score=173.68 Aligned_cols=82 Identities=11% Similarity=0.253 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..-+++|||.+|+..+...+|+.||++||+|+..+|+++..+...+|||||++.+..+|.+||..||-.+|+|+.|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34578999999999999999999999999999999999988888899999999999999999999999999999999975
Q ss_pred ec
Q 003361 205 DQ 206 (826)
Q Consensus 205 a~ 206 (826)
+.
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 43
No 5
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=99.63 E-value=7.1e-17 Score=166.45 Aligned_cols=89 Identities=21% Similarity=0.502 Sum_probs=76.1
Q ss_pred chhceeccccccchhhHhhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhc--cCCHHHHHHHHHHhhh-HHHHHHHHHHH
Q 003361 730 ELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD--HVKASQMLELLQTILD-DEAEMFVLKMW 806 (826)
Q Consensus 730 ~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~--~~~p~~l~~~l~~~ld-e~a~~fv~klW 806 (826)
+-+.-.||...| -.+.|+|||+++|+|+||+||++||+||+++|.+ ..+|+.|+++|++||. .+|..||-.||
T Consensus 29 ~~lekkVDmsKv----nleVlkPWItkrvneilgfEDdVViefvynqLee~k~ldpkkmQiNlTGFLngrnAreFmgeLW 104 (354)
T KOG2146|consen 29 ACLEKKVDMSKV----NLEVLKPWITKRVNEILGFEDDVVIEFVYNQLEEAKNLDPKKMQINLTGFLNGRNAREFMGELW 104 (354)
T ss_pred HHHhhhcchhhc----chhhhhHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCchheeeeeehhcccccHHHHHHHHH
Confidence 444445555555 4567899999999999999999999999999975 7799999999999999 89999999999
Q ss_pred HHHHHHHHhhhhcccc
Q 003361 807 RMLIFEIKKVETGLAL 822 (826)
Q Consensus 807 r~li~e~~~~~~g~~~ 822 (826)
-|||-+.-+..+||..
T Consensus 105 ~LliS~a~~s~~giP~ 120 (354)
T KOG2146|consen 105 SLLISEASQSQYGIPA 120 (354)
T ss_pred HHHHhhccccccCCch
Confidence 9999877777777753
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.58 E-value=3e-14 Score=158.27 Aligned_cols=83 Identities=17% Similarity=0.306 Sum_probs=78.7
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
..+.+|||+|||+.+++++|+.+|++||.|.+++|++++.||.++|||||+|.+.++|..||..|||..|+|+.|.|.|.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 44678999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 347 ~~~ 349 (352)
T TIGR01661 347 TNK 349 (352)
T ss_pred cCC
Confidence 653
No 7
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.55 E-value=2.5e-14 Score=139.85 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
...++|||+|||+.+++++|+.+|.+||.|.+|.|+.++.+|+++|||||+|.+.++|..||..|||..|+|+.|+|+|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 54
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=3.4e-14 Score=131.86 Aligned_cols=83 Identities=22% Similarity=0.391 Sum_probs=79.4
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
..++|||||||++.++++.|.+||++||.|..|.+-.|+.+-.++|||||+|.+.++|..||+.|||+.|+.++|.|+|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 35899999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
..-
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 764
No 9
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=5.8e-14 Score=144.14 Aligned_cols=87 Identities=17% Similarity=0.294 Sum_probs=80.5
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003361 118 LPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (826)
Q Consensus 118 ~p~~~~~~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G 197 (826)
.+...-..+.+|+|||-.||...++.+|..+|-.||.|++.++..|+.|+.++|||||.|.++.++..||..|||+.|+-
T Consensus 275 ~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 275 LPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred hhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 34444456789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEE
Q 003361 198 QELMLKV 204 (826)
Q Consensus 198 r~L~V~~ 204 (826)
+.|+|.+
T Consensus 355 KRLKVQL 361 (371)
T KOG0146|consen 355 KRLKVQL 361 (371)
T ss_pred hhhhhhh
Confidence 9999864
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.46 E-value=1.3e-12 Score=145.07 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
....++|||+|||+.+++++|+.+|..||.|++|+|+.++.+|+++|||||+|.+.++|..||..|||..|.++.|.|.|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 44689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 754
No 11
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1e-12 Score=138.87 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
...+.+|+|.||||...+.+|+.+|.+||+|.+|.||.+ ...++|||||+|+++++|.+|-..|||..|.||+|.|+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 345789999999999999999999999999999999997 567899999999999999999999999999999999998
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8665
No 12
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.41 E-value=9e-13 Score=111.04 Aligned_cols=70 Identities=33% Similarity=0.571 Sum_probs=67.7
Q ss_pred EEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003361 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (826)
Q Consensus 131 lfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 201 (826)
|||+|||..+++.+|+.+|+.||.|..+.+..+ .+|.++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6899999999999999999999999999999999985
No 13
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.40 E-value=8.3e-13 Score=146.73 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=77.7
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 14
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.4e-12 Score=136.29 Aligned_cols=82 Identities=18% Similarity=0.409 Sum_probs=78.9
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..|.+||||+-|++.+++..|+..|..||.|+.|.||++..||+++|||||+|++..+...|....+|..|+|+.|.|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ec
Q 003361 205 DQ 206 (826)
Q Consensus 205 a~ 206 (826)
.-
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 63
No 15
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=5e-12 Score=129.23 Aligned_cols=81 Identities=23% Similarity=0.342 Sum_probs=78.6
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|-|.|||..+++++|.+||.+||.|.++.|++|+.||.++|||||.|.+.++|.+||..|||+.++.-.|.|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
+
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 5
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=1e-11 Score=127.42 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=77.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
.+.+|||-||.+.+.+.-|.++|+.||.|..++|++|..|.+++|||||.+.+.++|..||..|||+.++++.|.|.|-.
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 357 n 357 (360)
T KOG0145|consen 357 N 357 (360)
T ss_pred C
Confidence 3
No 17
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=3.3e-13 Score=132.17 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.-|||||||+..|+.+|..+|+.||.|+.|.+++|..||+++||||+.|++..+..-||..|||..|.||.|+|+-
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999999974
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.29 E-value=8.7e-12 Score=145.90 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=77.7
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+||++.+++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.+.++|..||..|||+.|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999876
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.28 E-value=7.7e-12 Score=146.34 Aligned_cols=80 Identities=28% Similarity=0.414 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
...++|||||||+.+++++|+.+|..||.|.+|.|+.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999743
No 20
>PLN03213 repressor of silencing 3; Provisional
Probab=99.28 E-value=1.5e-11 Score=135.13 Aligned_cols=89 Identities=19% Similarity=0.350 Sum_probs=79.1
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA--EGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~--e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
....+||||||++.+++++|..+|+.||.|.+|.|++ .+| +|||||+|.+. .++..||..|||..++|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3468999999999999999999999999999999994 477 89999999987 78999999999999999999997
Q ss_pred EechhHHHHHHHHHhhh
Q 003361 204 VDQATREYLERYVDKKT 220 (826)
Q Consensus 204 ~a~~~kk~le~~k~kk~ 220 (826)
-+ ...||+.++..+.
T Consensus 84 KA--KP~YLeRLkrERe 98 (759)
T PLN03213 84 KA--KEHYLARLKREWE 98 (759)
T ss_pred ec--cHHHHHHHHHHHH
Confidence 66 5568888776554
No 21
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.27 E-value=2e-11 Score=103.69 Aligned_cols=70 Identities=33% Similarity=0.575 Sum_probs=65.0
Q ss_pred EEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003361 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (826)
Q Consensus 131 lfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 201 (826)
|||+|||+.++.++|..+|+.||.|..+.+..++. |.++|+|||+|.+.++|.+|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999865 99999999999999999999999999999999884
No 22
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=6e-12 Score=128.30 Aligned_cols=80 Identities=24% Similarity=0.349 Sum_probs=73.5
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
+..-++||||+|+|.+..+.|+.+|.+||.|+.+.|+.|+.+|+++|||||+|.+.++|.+|+.- -.-.|+||+..+++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34578899999999999999999999999999999999999999999999999999999999986 44678999988876
Q ss_pred e
Q 003361 205 D 205 (826)
Q Consensus 205 a 205 (826)
+
T Consensus 88 A 88 (247)
T KOG0149|consen 88 A 88 (247)
T ss_pred h
Confidence 5
No 23
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.26 E-value=1.8e-11 Score=128.70 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=70.0
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEech
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 207 (826)
.++|||||||+.+++.+|+.+|+.||.|.+|.|+.+. .++|||||+|.+..+|..||. |||..|+|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999998874 356999999999999999995 899999999999987643
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.24 E-value=5.1e-11 Score=139.13 Aligned_cols=82 Identities=20% Similarity=0.399 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
...++|||||||+.+++++|+.+|..||.|..+.|+.+..+|.++|||||+|.+...|..||..|||..|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 53
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.22 E-value=3.1e-11 Score=134.17 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G--r~L~V~~ 204 (826)
..++|||+|||+.+++++|+++|++||.|..|+|+.+..+|+++|||||+|.+.++|..||..||+..|.| +.|.|.|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998899999999999999999999999999999876 6889988
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 272 a~~ 274 (346)
T TIGR01659 272 AEE 274 (346)
T ss_pred CCc
Confidence 765
No 26
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.22 E-value=1.6e-11 Score=122.61 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=77.4
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|-|-||.+.++.++|+.+|.+||.|..|.|++|+.|+.++|||||-|.+..+|+.|+.+|+|..|+|+.|.|.+|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 27
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.22 E-value=1.7e-11 Score=138.35 Aligned_cols=82 Identities=33% Similarity=0.594 Sum_probs=79.1
Q ss_pred ceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEechh
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~~ 208 (826)
+.|||||||+.++++.|..+|+..|.|.+++++.|+.||+++|||||+|.+.+.|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HH
Q 003361 209 RE 210 (826)
Q Consensus 209 kk 210 (826)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 33
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4.7e-11 Score=127.05 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=82.7
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
.+|-+.|||+.|++.+++++|.-||+.||+|.+|.|++|..||.+..||||+|++.+++.+|.-.|+++-|+.+.|+|+|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHH
Q 003361 205 DQATRE 210 (826)
Q Consensus 205 a~~~kk 210 (826)
+++..+
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 999866
No 29
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=4.1e-11 Score=133.63 Aligned_cols=87 Identities=18% Similarity=0.310 Sum_probs=80.3
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+-..|+|.||||.|...+|..+|+.||.|..+.|++. ..|+.||||||.|....+|..||..|||..|+||+|.|+||
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 34678999999999999999999999999999999977 47888899999999999999999999999999999999999
Q ss_pred chhHHHHH
Q 003361 206 QATREYLE 213 (826)
Q Consensus 206 ~~~kk~le 213 (826)
.....|-.
T Consensus 194 V~Kd~ye~ 201 (678)
T KOG0127|consen 194 VDKDTYED 201 (678)
T ss_pred cccccccc
Confidence 88766654
No 30
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=5.1e-11 Score=130.44 Aligned_cols=89 Identities=25% Similarity=0.417 Sum_probs=81.0
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKV 204 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~-Gr~L~V~~ 204 (826)
+.+|-||||.||..+.+++|.-||.+.|.|-.++|+.|+.+|.++|||||+|++.+.|..||+.||+++|. |+.|.|++
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999997 99999998
Q ss_pred ech-hHHHHHH
Q 003361 205 DQA-TREYLER 214 (826)
Q Consensus 205 a~~-~kk~le~ 214 (826)
+.. ++-||-.
T Consensus 161 Svan~RLFiG~ 171 (506)
T KOG0117|consen 161 SVANCRLFIGN 171 (506)
T ss_pred eeecceeEecc
Confidence 753 3444433
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.20 E-value=5.1e-11 Score=137.32 Aligned_cols=80 Identities=26% Similarity=0.489 Sum_probs=77.1
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEech
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 207 (826)
.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||+.|.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999988899999999999999999999999999999999999999763
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=99.20 E-value=9e-11 Score=97.61 Aligned_cols=72 Identities=29% Similarity=0.537 Sum_probs=67.9
Q ss_pred eEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 130 tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
+|||+|||..++..+|+.+|..||.|..+.+..++ |.+.|||||+|.+..+|..|+..|+|..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 8899999999999999999999999999999999873
No 33
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=3.5e-11 Score=117.69 Aligned_cols=76 Identities=29% Similarity=0.455 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..+.||||||+..++..+|..+|..||.|.+|-|... +.|||||+|+++.+|..|+..|+|..|.|..|.|.+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4789999999999999999999999999999988765 45999999999999999999999999999999998764
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 4
No 34
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=1.2e-10 Score=119.53 Aligned_cols=88 Identities=16% Similarity=0.346 Sum_probs=83.1
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
....++|.|.-||..+|.++|+.||+..|.|.+|++++|+.+|.+.|||||.|.++.+|++||..|||+.|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHHHH
Q 003361 205 DQATREYL 212 (826)
Q Consensus 205 a~~~kk~l 212 (826)
+.+....|
T Consensus 118 ARPSs~~I 125 (360)
T KOG0145|consen 118 ARPSSDSI 125 (360)
T ss_pred ccCChhhh
Confidence 98876555
No 35
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.17 E-value=1.2e-10 Score=138.04 Aligned_cols=87 Identities=22% Similarity=0.377 Sum_probs=80.4
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
...++|||+||++.+++++|+.+|+.||.|.+|+++.+ .+|.++|||||.|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34678999999999999999999999999999999999 69999999999999999999999999999999999999999
Q ss_pred chhHHHHH
Q 003361 206 QATREYLE 213 (826)
Q Consensus 206 ~~~kk~le 213 (826)
........
T Consensus 362 ~~k~~~~~ 369 (562)
T TIGR01628 362 QRKEQRRA 369 (562)
T ss_pred cCcHHHHH
Confidence 87654433
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=6.1e-11 Score=122.73 Aligned_cols=83 Identities=20% Similarity=0.347 Sum_probs=79.2
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
...-||||.|...++.+.|++.|.+||.|..++|++|..|++++|||||.|-+.++|++||..|||.-|++|.|+.+|+.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 36779999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hhH
Q 003361 207 ATR 209 (826)
Q Consensus 207 ~~k 209 (826)
.+.
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 653
No 37
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=2.2e-11 Score=129.72 Aligned_cols=79 Identities=28% Similarity=0.432 Sum_probs=76.3
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
-|.||||.|++.+.++.|+..|..||+|+++.+.+|+.||+++||+||+|+-++.|+-|++.|||..++||.|+|....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998543
No 38
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.14 E-value=4.4e-11 Score=117.65 Aligned_cols=79 Identities=19% Similarity=0.421 Sum_probs=76.1
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
...|||||||+..+++..|.+||-++|+|+.+++++|+.+..++|||||+|.+.++|.-|+..||.+.|.|++|+|.-+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999754
No 39
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.14 E-value=1.2e-10 Score=138.07 Aligned_cols=77 Identities=22% Similarity=0.408 Sum_probs=74.8
Q ss_pred eEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 130 tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+|||||||+.+|+++|+.+|+.||.|.+|+|+++..|++++|||||+|.+.++|.+||..||+..|.|+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 79999999999999999999999999999999998899999999999999999999999999999999999999874
No 40
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.13 E-value=1.7e-10 Score=119.73 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=68.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.||||+||++.+|+.+|++||+.||.|..|.|+.+ +...|||||+|.++.++..|+. |||..|.++.|.|.-.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 4689999999999999999999999999999999987 4556899999999999999995 8999999999998654
No 41
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.13 E-value=1.6e-10 Score=120.34 Aligned_cols=80 Identities=26% Similarity=0.457 Sum_probs=77.1
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEech
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 207 (826)
.++|||||||+.+++++|..+|..||.|..+.++.++.+|.++|||||.|.+.++|..|+..|+|..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999998654
No 42
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=8.2e-11 Score=110.38 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
..+..|||.+|...+++++|...|+.||.|+.+.+..|+.||-.+||++|+|++...|+.|+..|||..|.|.+|.|+|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 003361 206 Q 206 (826)
Q Consensus 206 ~ 206 (826)
=
T Consensus 150 F 150 (170)
T KOG0130|consen 150 F 150 (170)
T ss_pred E
Confidence 3
No 43
>smart00360 RRM RNA recognition motif.
Probab=99.13 E-value=2.1e-10 Score=94.92 Aligned_cols=70 Identities=31% Similarity=0.539 Sum_probs=66.8
Q ss_pred EcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003361 133 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (826)
Q Consensus 133 VgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 202 (826)
|+|||..++.++|+.+|..||.|..+.+..++.++.++|||||+|.+.++|..|+..|+|..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999988778999999999999999999999999999999999987
No 44
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.13 E-value=1.5e-10 Score=135.50 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=73.7
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~-Gr~L~V~~a 205 (826)
..++|||+|||+.+++++|..+|+.||.|..++|+.| .+|+++|||||+|.+.++|..||..|||..|. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4689999999999999999999999999999999999 79999999999999999999999999999985 788877765
Q ss_pred c
Q 003361 206 Q 206 (826)
Q Consensus 206 ~ 206 (826)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 3
No 45
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.11 E-value=2.3e-10 Score=131.87 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
....++|||+|||+.+++.+|+.+|+.||.|..|.|+.++.+|+++|||||+|.+.++|..||. |||..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4457899999999999999999999999999999999999999999999999999999999997 899999999999986
Q ss_pred ec
Q 003361 205 DQ 206 (826)
Q Consensus 205 a~ 206 (826)
..
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 54
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.10 E-value=1.2e-09 Score=127.08 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCC-CCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 125 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 125 ~~~~~tlfVgnLp~-~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
.+++++|||+||++ .+++++|+.+|+.||.|.+|+++.++ +|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999998862 5899999999999999999999999999999999
Q ss_pred Eech
Q 003361 204 VDQA 207 (826)
Q Consensus 204 ~a~~ 207 (826)
++..
T Consensus 347 ~s~~ 350 (481)
T TIGR01649 347 PSKQ 350 (481)
T ss_pred Eccc
Confidence 8644
No 47
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.7e-11 Score=120.05 Aligned_cols=82 Identities=22% Similarity=0.390 Sum_probs=79.0
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..+|||||+|...|++.-|...|-+||.|+.+.++.|-.+++++|||||+|.-.++|..||..||+.+|.|+.|+|+++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
+.
T Consensus 89 P~ 90 (298)
T KOG0111|consen 89 PE 90 (298)
T ss_pred Cc
Confidence 65
No 48
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=5.4e-10 Score=115.84 Aligned_cols=77 Identities=25% Similarity=0.397 Sum_probs=72.5
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
.+..|+||||||+..++++.|+..|+.||.|..|++..+. ||+||.|++.++|..||..|||..|+|+.+++.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 4568999999999999999999999999999999999885 9999999999999999999999999999999998
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
-..
T Consensus 235 GKe 237 (321)
T KOG0148|consen 235 GKE 237 (321)
T ss_pred ccc
Confidence 744
No 49
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=2.1e-09 Score=96.95 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=73.2
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
-.+.|||.|||+.+|.+++..||++||.|..++|-.. ...+|-|||.|++..+|.+|+..|+|+.+.++.|.|-+-+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4678999999999999999999999999999998654 4567999999999999999999999999999999998876
Q ss_pred hhHH
Q 003361 207 ATRE 210 (826)
Q Consensus 207 ~~kk 210 (826)
....
T Consensus 94 ~~~~ 97 (124)
T KOG0114|consen 94 PEDA 97 (124)
T ss_pred HHHH
Confidence 6543
No 50
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.03 E-value=1.5e-09 Score=90.70 Aligned_cols=74 Identities=27% Similarity=0.486 Sum_probs=68.9
Q ss_pred eEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 130 tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
+|||+|||..++.++|+.+|..||.|..+.+..++ .+.+.|+|||+|.+.++|..|+..++|..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999998875 447889999999999999999999999999999999864
No 51
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=9.9e-10 Score=119.99 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
.+.+.+|||++||-...+.+|...|..||.|++.++..|+.||.+++||||.|++..+|..||..|||+.|++++|+|.+
T Consensus 421 GpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 421 GPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred CCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred e
Q 003361 205 D 205 (826)
Q Consensus 205 a 205 (826)
.
T Consensus 501 k 501 (510)
T KOG0144|consen 501 K 501 (510)
T ss_pred e
Confidence 4
No 52
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=9.1e-10 Score=120.27 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=78.5
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCce-eC--CeEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-ID--GQELM 201 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~-i~--Gr~L~ 201 (826)
+...-.+|||.||..+++.+|+.+|.+||.|.+|.|++|+.||.++|||||.|.+.++|..|+.+||... |- ..+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4557789999999999999999999999999999999999999999999999999999999999998753 43 46788
Q ss_pred EEEechhHHHH
Q 003361 202 LKVDQATREYL 212 (826)
Q Consensus 202 V~~a~~~kk~l 212 (826)
|++++..+..+
T Consensus 111 vk~Ad~E~er~ 121 (510)
T KOG0144|consen 111 VKYADGERERI 121 (510)
T ss_pred ecccchhhhcc
Confidence 99888765554
No 53
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.94 E-value=8.2e-09 Score=106.44 Aligned_cols=90 Identities=18% Similarity=0.375 Sum_probs=79.6
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
......||+|.|...++++.|-..|.+|-.....+++++..||+++|||||.|.++.++.+|+..|||..++.+.|++.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred echhHHHHHH
Q 003361 205 DQATREYLER 214 (826)
Q Consensus 205 a~~~kk~le~ 214 (826)
.......++.
T Consensus 267 S~wkeRn~dv 276 (290)
T KOG0226|consen 267 SEWKERNLDV 276 (290)
T ss_pred hhHHhhhhHH
Confidence 4444433333
No 54
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.93 E-value=1.2e-09 Score=122.75 Aligned_cols=79 Identities=27% Similarity=0.524 Sum_probs=74.4
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
+...||||||++++++++|+.+|..||.|..|.+..|..||.++|||||+|.+.+.|..|+..|||++|-|+.|+|.+-
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 4444999999999999999999999999999999999779999999999999999999999999999999999999754
No 55
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=3.7e-09 Score=118.26 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHh-----CC-ceeCCeEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-----NK-FNIDGQEL 200 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L-----ng-~~i~Gr~L 200 (826)
...||||.||||.+|++.|...|++||.|.++.|+.++.||.++|+|||.|.+...|..||... .| +.|+||.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 3689999999999999999999999999999999999999999999999999999999999765 34 78999999
Q ss_pred EEEEechhHH
Q 003361 201 MLKVDQATRE 210 (826)
Q Consensus 201 ~V~~a~~~kk 210 (826)
.|..+...+.
T Consensus 371 kv~~Av~Rke 380 (678)
T KOG0127|consen 371 KVTLAVTRKE 380 (678)
T ss_pred eeeeccchHH
Confidence 9998876543
No 56
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.92 E-value=3.2e-09 Score=123.55 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=68.9
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L--ng~~i~Gr~L~V~~ 204 (826)
|.++|||+|||+.+++++|+.+|+.||.|.+|.++.+ +|||||+|.+.++|..||..| |+..|+|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999999864 389999999999999999864 78999999999999
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 75 s~~ 77 (481)
T TIGR01649 75 STS 77 (481)
T ss_pred cCC
Confidence 864
No 57
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.91 E-value=6.1e-09 Score=121.74 Aligned_cols=75 Identities=24% Similarity=0.332 Sum_probs=62.3
Q ss_pred CCCCCCceEEEcCCCCCCChHHHHHHhhcC------------CceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 003361 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVC------------GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190 (826)
Q Consensus 123 ~~~~~~~tlfVgnLp~~vte~~L~~lF~~~------------G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L 190 (826)
......++|||||||+.+++.+|..+|..| +.|..+.+ ++.+|||||+|.+.++|..||. |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-C
Confidence 345568999999999999999999999975 23333333 3456999999999999999995 9
Q ss_pred CCceeCCeEEEEEE
Q 003361 191 NKFNIDGQELMLKV 204 (826)
Q Consensus 191 ng~~i~Gr~L~V~~ 204 (826)
||+.|.|+.|.|..
T Consensus 243 ~g~~~~g~~l~v~r 256 (509)
T TIGR01642 243 DSIIYSNVFLKIRR 256 (509)
T ss_pred CCeEeeCceeEecC
Confidence 99999999999964
No 58
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.88 E-value=5.6e-09 Score=122.38 Aligned_cols=74 Identities=20% Similarity=0.416 Sum_probs=68.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcC--CceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~--G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..++|||+||++.+++++|+.+|+.| |.|.+|.++. +||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999998764 5999999999999999999999999999999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+.+.
T Consensus 304 Akp~ 307 (578)
T TIGR01648 304 AKPV 307 (578)
T ss_pred ccCC
Confidence 9653
No 59
>smart00361 RRM_1 RNA recognition motif.
Probab=98.87 E-value=7.6e-09 Score=88.65 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=54.7
Q ss_pred hHHHHHHhh----cCCceeEEE-EeccCCC--CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003361 142 SDFVLSVLK----VCGTVKSWK-RAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (826)
Q Consensus 142 e~~L~~lF~----~~G~I~~~k-i~~d~~t--Gk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 202 (826)
+++|+.+|+ .||.|.++. ++.++.+ |.++|||||.|.+.++|..|+..|||..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888888 999999995 6666556 999999999999999999999999999999999986
No 60
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.86 E-value=1.2e-08 Score=83.30 Aligned_cols=56 Identities=29% Similarity=0.452 Sum_probs=50.9
Q ss_pred HHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 145 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 145 L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
|..+|++||.|..+.+.... .++|||+|.+.++|..|+..|||..|+|++|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997652 589999999999999999999999999999999986
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=3.1e-09 Score=113.55 Aligned_cols=95 Identities=26% Similarity=0.464 Sum_probs=85.5
Q ss_pred CCCCCCCCCCCCC-------CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHH
Q 003361 112 VVRPVPLPTVTPA-------EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL 184 (826)
Q Consensus 112 ~~~P~~~p~~~~~-------~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~ 184 (826)
+++|+++|+..+. ...-+.|||..+.+..++++|+.+|..||.|++|.+.+++..+.++||||++|.+..+..
T Consensus 187 VgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 187 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred ccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 4567777766653 445789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEEec
Q 003361 185 RALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 185 ~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
.||..||-+.|+|..|+|.-+.
T Consensus 267 eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 267 EAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HHhhhcchhhcccceEeccccc
Confidence 9999999999999999997553
No 62
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=4.3e-09 Score=103.71 Aligned_cols=79 Identities=18% Similarity=0.331 Sum_probs=70.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||||||..+.+.+|..||.+||.|..|.+-.- ..+.+||||+|+++.+|.-||..-+|+.++|..|+|.|+-
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 5789999999999999999999999999999987432 3456899999999999999999999999999999999875
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 43
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.83 E-value=3.1e-09 Score=111.20 Aligned_cols=71 Identities=18% Similarity=0.407 Sum_probs=66.8
Q ss_pred ceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEech
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 207 (826)
..|||||||..++..+|+.||.+||+|..|.|+.+ ||||..++...+.-||+.|||+.|+|..|.|.-+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 47999999999999999999999999999999986 999999999999999999999999999999975544
No 64
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.77 E-value=1.6e-08 Score=101.83 Aligned_cols=84 Identities=25% Similarity=0.334 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcC-CceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~-G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
.....-+||+.||..+.+..|..+|..| |.|..+++.+++.||.++|||||+|++.+-|.-|...||++-|+|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456779999999999999999999988 778888888999999999999999999999999999999999999999999
Q ss_pred Eechh
Q 003361 204 VDQAT 208 (826)
Q Consensus 204 ~a~~~ 208 (826)
|=..-
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 86554
No 65
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=1.6e-08 Score=111.19 Aligned_cols=74 Identities=16% Similarity=0.363 Sum_probs=70.4
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
....|||.||+..+|++.|+.+|+.||.|.+|+.++| ||||.|.+.++|.+||..|||++|+|..|-|.++.
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3678999999999999999999999999999998876 99999999999999999999999999999999998
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
+.
T Consensus 330 P~ 331 (506)
T KOG0117|consen 330 PV 331 (506)
T ss_pred Ch
Confidence 76
No 66
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.70 E-value=1.8e-08 Score=99.47 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=74.4
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEE-EEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~-ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.+||||||.+.+++..|..+|+.||.|.+. ++++++.||.++|||||.|.+.+.+.+|+..|||..++.++|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 35899999999999999999999999998763 68888889999999999999999999999999999999999999987
Q ss_pred c
Q 003361 206 Q 206 (826)
Q Consensus 206 ~ 206 (826)
-
T Consensus 175 ~ 175 (203)
T KOG0131|consen 175 F 175 (203)
T ss_pred E
Confidence 3
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.66 E-value=2.1e-08 Score=105.20 Aligned_cols=78 Identities=23% Similarity=0.421 Sum_probs=72.5
Q ss_pred CCCCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003361 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (826)
Q Consensus 123 ~~~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 202 (826)
.-....++||||||.+.|+..+|+..|.+||.|..|.|+.| |+||.|.-.++|..|++.|||.+|.|+.++|
T Consensus 73 sKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 73 SKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHV 144 (346)
T ss_pred ccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeee
Confidence 33557899999999999999999999999999999999885 9999999999999999999999999999999
Q ss_pred EEechh
Q 003361 203 KVDQAT 208 (826)
Q Consensus 203 ~~a~~~ 208 (826)
.++.+.
T Consensus 145 q~stsr 150 (346)
T KOG0109|consen 145 QLSTSR 150 (346)
T ss_pred eeeccc
Confidence 987654
No 68
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.65 E-value=5e-08 Score=99.74 Aligned_cols=84 Identities=15% Similarity=0.319 Sum_probs=76.2
Q ss_pred CceEEEcCCCCCCChHHHHH----HhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 128 QTKVYVGKIAPTADSDFVLS----VLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~----lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
..||||.||+..+.-++|+. ||+.||.|..|.... +.+.+|-|||.|.+...|..|++.|+|+.+-|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999998887 999999999987753 78999999999999999999999999999999999999
Q ss_pred EechhHHHHHH
Q 003361 204 VDQATREYLER 214 (826)
Q Consensus 204 ~a~~~kk~le~ 214 (826)
++.+..+.+..
T Consensus 86 yA~s~sdii~~ 96 (221)
T KOG4206|consen 86 YAKSDSDIIAQ 96 (221)
T ss_pred cccCccchhhc
Confidence 99887766644
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.63 E-value=8.2e-08 Score=105.07 Aligned_cols=78 Identities=26% Similarity=0.417 Sum_probs=73.4
Q ss_pred CCceEEEcCCCCCCChHHHHHHhh-cCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~-~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
..+.+||.|||+.+...+|+.||. +.|.|..|.+..| .+|+++|||.|+|.+++.+++|++.||.+.+.|+.|.|+-+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 456799999999999999999996 8899999999999 69999999999999999999999999999999999999744
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.2e-07 Score=106.29 Aligned_cols=75 Identities=25% Similarity=0.472 Sum_probs=70.7
Q ss_pred EEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEechh
Q 003361 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (826)
Q Consensus 131 lfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~~ 208 (826)
|||.||++.++...|..+|+.||.|++|++..+ ..| ++|| ||.|++.++|..|+..|||..+.|+.|.|......
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATD-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 999999999999999999999999999999998 466 9999 99999999999999999999999999999876553
No 71
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.57 E-value=4.4e-07 Score=92.19 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEec-cCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQ-YPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 201 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~-d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~---Gr~L~ 201 (826)
...+||||.+||..+..-+|..||..|-....+.+-. ++....++-+|||+|.+...|..|+..|||+.|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 4589999999999999999999999998777766533 3222335589999999999999999999999998 88999
Q ss_pred EEEechh
Q 003361 202 LKVDQAT 208 (826)
Q Consensus 202 V~~a~~~ 208 (826)
+.++.+.
T Consensus 112 iElAKSN 118 (284)
T KOG1457|consen 112 IELAKSN 118 (284)
T ss_pred eeehhcC
Confidence 9998765
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=9.4e-08 Score=110.52 Aligned_cols=93 Identities=24% Similarity=0.379 Sum_probs=81.2
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
...++.|+|.|||+.++-.+++.||+.||.|++|+|+.-...+.++|||||+|-++.+|.+|+.+|.++.|-||.|.+.|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 34478999999999999999999999999999999987645677899999999999999999999999999999999999
Q ss_pred echhHHHHHHHHHh
Q 003361 205 DQATREYLERYVDK 218 (826)
Q Consensus 205 a~~~kk~le~~k~k 218 (826)
+..--. ++....+
T Consensus 690 A~~d~~-~e~~r~r 702 (725)
T KOG0110|consen 690 AKSDNT-MEALRER 702 (725)
T ss_pred hccchH-HHHHHHH
Confidence 876533 5444443
No 73
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.52 E-value=1.7e-07 Score=97.16 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=74.9
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 203 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~---Gr~L~V~ 203 (826)
..++||||-|...-.+++++.+|..||.|.+|.+.+.+ .|.++||+||.|.+..+|..||..|||.... ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 57899999999999999999999999999999999985 9999999999999999999999999997543 4669999
Q ss_pred EechhHH
Q 003361 204 VDQATRE 210 (826)
Q Consensus 204 ~a~~~kk 210 (826)
+++..++
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9876543
No 74
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.49 E-value=2e-07 Score=108.35 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=70.9
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEech
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 207 (826)
.+|||||+|+..+++.+|..+|..||.|.+|.++..+ |||||.+....+|.+||..|+.+.|.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 6899999999999999999999999999999998764 9999999999999999999999999999999999864
Q ss_pred h
Q 003361 208 T 208 (826)
Q Consensus 208 ~ 208 (826)
.
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 4
No 75
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.47 E-value=4e-07 Score=104.86 Aligned_cols=85 Identities=25% Similarity=0.371 Sum_probs=75.7
Q ss_pred CCCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccC---CCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003361 124 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (826)
Q Consensus 124 ~~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~---~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L 200 (826)
.++..++||||||++.+++++|...|+.||+|.+++|++-+ .......||||.|-+..+|.+|+..|+|..|.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 35668899999999999999999999999999999998865 224556799999999999999999999999999999
Q ss_pred EEEEechh
Q 003361 201 MLKVDQAT 208 (826)
Q Consensus 201 ~V~~a~~~ 208 (826)
++.|....
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 99998443
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.43 E-value=4.2e-07 Score=105.27 Aligned_cols=78 Identities=28% Similarity=0.420 Sum_probs=70.4
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCC----CCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG----TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tG----k~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
.++|||.||++.++...|..+|...|.|+++.|...+ .+ .+.|||||+|.++++|..|++.|+|+.|+|+.|.|.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3449999999999999999999999999999887754 33 245999999999999999999999999999999999
Q ss_pred Eec
Q 003361 204 VDQ 206 (826)
Q Consensus 204 ~a~ 206 (826)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 886
No 77
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.43 E-value=4.9e-07 Score=97.16 Aligned_cols=79 Identities=20% Similarity=0.349 Sum_probs=71.0
Q ss_pred CCCCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHH-HHhCCceeCCeEEE
Q 003361 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL-RLLNKFNIDGQELM 201 (826)
Q Consensus 123 ~~~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al-~~Lng~~i~Gr~L~ 201 (826)
+.+....|||||+|...+++.+|+..|.+||.|.++.++... +||||+|.+..+|..|. +.+|-+.|+|..|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 446668999999999999999999999999999999998764 79999999999999766 66688899999999
Q ss_pred EEEech
Q 003361 202 LKVDQA 207 (826)
Q Consensus 202 V~~a~~ 207 (826)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999876
No 78
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.40 E-value=8.6e-07 Score=95.26 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeE--------EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~--------~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 196 (826)
...++.|||.|||..+|.+++..+|++||.|.+ |++..+ ..|+.+|-|.|.|.-.+++.-|+.+|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 334677999999999999999999999998874 788888 57999999999999999999999999999999
Q ss_pred CeEEEEEEech
Q 003361 197 GQELMLKVDQA 207 (826)
Q Consensus 197 Gr~L~V~~a~~ 207 (826)
|+.|+|..|.-
T Consensus 210 g~~~rVerAkf 220 (382)
T KOG1548|consen 210 GKKLRVERAKF 220 (382)
T ss_pred CcEEEEehhhh
Confidence 99999987743
No 79
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=6.8e-07 Score=100.40 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=70.6
Q ss_pred ceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEechh
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~~ 208 (826)
..|||| +.+|+..|..+|+.+|+|.++++++|. | +.|||||.|.++.+|.+||..||...|.|++|+|.|.+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999995 4 9999999999999999999999999999999999998654
Q ss_pred HHH
Q 003361 209 REY 211 (826)
Q Consensus 209 kk~ 211 (826)
..+
T Consensus 76 ~~~ 78 (369)
T KOG0123|consen 76 PSL 78 (369)
T ss_pred Cce
Confidence 333
No 80
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.35 E-value=3.1e-07 Score=100.18 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=73.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++||||+|++.++++.|+..|.+||.|..|.++.++.+|.++||+||+|.++..+..+|.. .-+.|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 578999999999999999999999999999999999999999999999999999999988864 5677889998887766
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
+.
T Consensus 84 ~r 85 (311)
T KOG4205|consen 84 SR 85 (311)
T ss_pred Cc
Confidence 54
No 81
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.29 E-value=2e-06 Score=90.64 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
....++|+|.||++.|++.+|++||..||.+..+-+.+++ +|.+.|.|-|.|....+|.+||..|||+.|+|+.|.+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3346889999999999999999999999999999999985 999999999999999999999999999999999998876
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
...
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 543
No 82
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.27 E-value=1.5e-06 Score=95.47 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
....|+|||.|||+++|...|+.-|..||.|.++.|+ ..|+++| .|.|.+++.|++|+..|||..|+|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4568999999999999999999999999999999984 3688887 8999999999999999999999999999986
Q ss_pred e
Q 003361 205 D 205 (826)
Q Consensus 205 a 205 (826)
+
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 4
No 83
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.26 E-value=3.7e-06 Score=95.13 Aligned_cols=76 Identities=26% Similarity=0.418 Sum_probs=66.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
...+|||+|||++++...|.++|..||.|+...|..-...++..+||||+|.+..++..||.+ +-..|+|++|.|.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 356699999999999999999999999999888755322456569999999999999999997 7899999999994
No 84
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.21 E-value=6.4e-07 Score=90.87 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..+||||+|+...|+++.|.++|-..|+|..+.|..+ ..++.+ ||||.|.+..++.-|+.+|||..+.+..|.|.+--
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 4789999999999999999999999999999999887 477777 99999999999999999999999999999998754
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
.+
T Consensus 86 G~ 87 (267)
T KOG4454|consen 86 GN 87 (267)
T ss_pred CC
Confidence 43
No 85
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.19 E-value=2.1e-06 Score=90.46 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=74.6
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
......+||||+.+.++...+...|..||.|..+.+..+..+|.++||+||+|.+...+..|+. |||..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3457899999999999999999999999999999999998888999999999999999999999 899999999999964
Q ss_pred e
Q 003361 205 D 205 (826)
Q Consensus 205 a 205 (826)
-
T Consensus 177 ~ 177 (231)
T KOG4209|consen 177 K 177 (231)
T ss_pred e
Confidence 3
No 86
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.16 E-value=8.2e-06 Score=95.12 Aligned_cols=19 Identities=11% Similarity=0.218 Sum_probs=8.3
Q ss_pred EEEEEEechhHHHHHHHHH
Q 003361 199 ELMLKVDQATREYLERYVD 217 (826)
Q Consensus 199 ~L~V~~a~~~kk~le~~k~ 217 (826)
.|.|+-+.-+..+|+++..
T Consensus 722 ILevne~vLse~~iqnLik 740 (1102)
T KOG1924|consen 722 ILEVNEDVLSESMIQNLIK 740 (1102)
T ss_pred HhhccHHHHHHHHHHHHHH
Confidence 3444434344444544443
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=2.2e-06 Score=98.10 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=77.6
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
....+.+|||+||..++++.+.+++..||.+....++.+..+|.++||||++|.++.-...|+..|||..+++++|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34578899999999999999999999999999999999998999999999999999999999999999999999999986
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+-.
T Consensus 366 A~~ 368 (500)
T KOG0120|consen 366 AIV 368 (500)
T ss_pred hhc
Confidence 643
No 88
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.05 E-value=1.5e-05 Score=93.12 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 003361 100 PGIPGVR 106 (826)
Q Consensus 100 p~~pg~~ 106 (826)
.|.+|.+
T Consensus 589 ~g~~Gg~ 595 (1102)
T KOG1924|consen 589 GGFLGGP 595 (1102)
T ss_pred CCCCCCC
Confidence 3333333
No 89
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.00 E-value=6.4e-06 Score=90.00 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=75.0
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
....||||+||..+++.+|+.+|.+||.|..+.++.|..+..++|||||.|.+.+++..++. .+-+.|.|+.+.|+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 46689999999999999999999999999999999999999999999999999999999887 48889999999998776
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
+.
T Consensus 175 pk 176 (311)
T KOG4205|consen 175 PK 176 (311)
T ss_pred ch
Confidence 64
No 90
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.99 E-value=9.4e-05 Score=79.59 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=52.9
Q ss_pred EEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHH-HHHHHhCCceeCCeEEEEEEechhH
Q 003361 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL-RALRLLNKFNIDGQELMLKVDQATR 209 (826)
Q Consensus 131 lfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~-~Al~~Lng~~i~Gr~L~V~~a~~~k 209 (826)
+.|+--.+.+++.++..++.+.-.|.+.-|.+. .++.+.| .|.+..+.. .||.++. .-+|.-++.|+
T Consensus 348 r~~~p~~~plSeAEFEdiM~RNraiSSSAIsrA-vsdASaG----Dy~~AiETllTAI~lIK-------qSrv~~DdRCr 415 (498)
T KOG4849|consen 348 RHVNPQMFPLSEAEFEDIMTRNRAISSSAISRA-VSDASAG----DYKGAIETLLTAIQLIK-------QSRVGHDDRCR 415 (498)
T ss_pred ccCCCCCccchHHHHHHHHhhcchhhHHHHHHH-hcccccc----cchhHHHHHHHHHHHHH-------hhccccchHHH
Confidence 556666667899999999999888888777655 5666666 666665544 6777653 34455667777
Q ss_pred HHHHHHHHhh
Q 003361 210 EYLERYVDKK 219 (826)
Q Consensus 210 k~le~~k~kk 219 (826)
.+|..++.+-
T Consensus 416 vLissL~dcL 425 (498)
T KOG4849|consen 416 VLISSLEDCL 425 (498)
T ss_pred HHHHHHHHHH
Confidence 7776655444
No 91
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.97 E-value=1.9e-06 Score=93.63 Aligned_cols=65 Identities=12% Similarity=-0.039 Sum_probs=55.0
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 196 (826)
..+||+|++|+..+...++..+|..+|.|.+..+ ..|-...||.++|....+...|+.. +|..+.
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~----ask~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEVSYAHT----ASKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhh----hccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 3589999999999999999999999999988766 3455567888999999999999984 776664
No 92
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=1.1e-05 Score=91.76 Aligned_cols=72 Identities=22% Similarity=0.399 Sum_probs=64.8
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 201 (826)
..+..+|+|-|||..|+.++|+.+|+.||.|+.++. +-...|..||+|.|...|.+|++.||+..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 446789999999999999999999999999999654 344568999999999999999999999999998887
No 93
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.92 E-value=6.6e-05 Score=68.60 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=67.1
Q ss_pred ceEEEcCCCCCCChHHHHHHhhc--CCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKV--CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELML 202 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~--~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~----Gr~L~V 202 (826)
+||-|.|||...+..+|..++.. .|..--+.++.|..++.+.|||||.|.++..|..-...+||..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999998864 356666788888889999999999999999999999999999876 556677
Q ss_pred EEe
Q 003361 203 KVD 205 (826)
Q Consensus 203 ~~a 205 (826)
.||
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 776
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.92 E-value=8e-06 Score=84.41 Aligned_cols=71 Identities=25% Similarity=0.421 Sum_probs=65.0
Q ss_pred ceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEech
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 207 (826)
..||||+||+.+.+.+|..||..||.|..+.+.. |||||+|.+.-+|.-|+.-|||..|.|-.+.|.|+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 4689999999999999999999999999988743 7999999999999999999999999999988887754
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.66 E-value=0.00038 Score=76.68 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=68.0
Q ss_pred CceEEEcCCCC-CCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 128 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 128 ~~tlfVgnLp~-~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
.+.|.|.||.. .+|.+.|..+|+.||.|.+|+|..++. --|.|.|.+...|.-|+..|+|..|.|++|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 67888999876 689999999999999999999988742 469999999999999999999999999999998775
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
-+
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 43
No 96
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.65 E-value=0.00011 Score=83.98 Aligned_cols=78 Identities=13% Similarity=0.194 Sum_probs=64.0
Q ss_pred CCCCCceEEEcCCCCCCChHHHHHHhh-cCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 003361 124 AEKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQE 199 (826)
Q Consensus 124 ~~~~~~tlfVgnLp~~vte~~L~~lF~-~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i---~Gr~ 199 (826)
.....+.|||.||-.-+|.-.|+.|++ .||.|... + .| +.+..|||.|.+.++|...+.+|||+.+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-W-mD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-W-MD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-H-HH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 355688999999999999999999999 66666665 2 33 3457899999999999999999999875 4777
Q ss_pred EEEEEech
Q 003361 200 LMLKVDQA 207 (826)
Q Consensus 200 L~V~~a~~ 207 (826)
|.|.|+..
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 88887644
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.58 E-value=0.00021 Score=73.18 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=56.7
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i 195 (826)
..-+.||||.||...|++++|+.+|+.|-....++|... .| .+.+||+|++.+.|..||..|.|..|
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 344789999999999999999999999988777776321 33 36899999999999999999998776
No 98
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.52 E-value=0.00019 Score=78.36 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeE--------EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~--------~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G 197 (826)
....+|||-+||..++.++|..+|.+||.|.. +.|.+++.|++++|=|.|+|+++..|+.||..+++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 35779999999999999999999999998864 5677888999999999999999999999999999999999
Q ss_pred eEEEEEEechh
Q 003361 198 QELMLKVDQAT 208 (826)
Q Consensus 198 r~L~V~~a~~~ 208 (826)
..|+|.++...
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 99998766443
No 99
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.028 Score=66.53 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=4.7
Q ss_pred HHHHhhhCCCCC
Q 003361 293 MVEERLKTNPLP 304 (826)
Q Consensus 293 ~~eer~~~~~~~ 304 (826)
+|+--..+-++|
T Consensus 257 liema~sGq~lP 268 (1118)
T KOG1029|consen 257 LIEMAKSGQPLP 268 (1118)
T ss_pred HHHHHhcCCCCC
Confidence 343333344433
No 100
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.46 E-value=7.2e-05 Score=85.11 Aligned_cols=83 Identities=18% Similarity=0.296 Sum_probs=77.0
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
....+|||+..|+..++.-+|..||+.+|+|..|.+|.|..++.++|.|||+|.+..++..||. |.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 4457899999999999999999999999999999999999999999999999999999999995 799999999999986
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
.++.
T Consensus 255 sEae 258 (549)
T KOG0147|consen 255 SEAE 258 (549)
T ss_pred cHHH
Confidence 6554
No 101
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.43 E-value=0.0061 Score=71.30 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=27.3
Q ss_pred CCccccCccCCCCCCcchhhhccCCCcccccCChH
Q 003361 584 GKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTE 618 (826)
Q Consensus 584 ~kr~~v~~vf~~~dde~~~~~~~kr~lvpi~y~~~ 618 (826)
.+.+.|.+||+.++|+|.+.-.++ +||||+|+..
T Consensus 514 ~kk~~~~~v~~~~~d~Dk~v~~~k-k~vp~dyd~n 547 (668)
T KOG2253|consen 514 KKKLPETGVFREDDDEDKNVHEKK-KLVPLDYDRN 547 (668)
T ss_pred cccCCCcccccccCCcccccchhh-hcccccCChh
Confidence 356789999999998885555555 9999999985
No 102
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.40 E-value=0.007 Score=70.70 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=66.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeE-EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~-~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
.++.|-|.|+|++++-++|.+||..|-.+-. |.+-++ ..|++.|-|.|.|++.++|.+|..-|++..|..+.+.|.+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3457889999999999999999999987644 444344 7899999999999999999999999999999999998864
No 103
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.34 E-value=0.00059 Score=60.15 Aligned_cols=70 Identities=19% Similarity=0.294 Sum_probs=49.2
Q ss_pred ceEEEcCCCCCCChH----HHHHHhhcCC-ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 129 TKVYVGKIAPTADSD----FVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 129 ~tlfVgnLp~~vte~----~L~~lF~~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
..|||.|||...+.. -|+.|+..|| +|.++ + .+.|+|-|.+.+.|.+|..-|+|-.+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999988875 5677888997 56554 1 2789999999999999999999999999999999
Q ss_pred Eechh
Q 003361 204 VDQAT 208 (826)
Q Consensus 204 ~a~~~ 208 (826)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87544
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.11 E-value=0.011 Score=64.76 Aligned_cols=76 Identities=22% Similarity=0.257 Sum_probs=67.8
Q ss_pred CCCCceEEEcCCCC-CCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 125 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 125 ~~~~~tlfVgnLp~-~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
..+++.+.|-+|.. .++.+.|..||..||.|..+++++.+ + |-|.|++.+....++||..||+..+.|.+|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-P----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-c----ceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 45688999999987 56778999999999999999998863 3 689999999999999999999999999999998
Q ss_pred Ee
Q 003361 204 VD 205 (826)
Q Consensus 204 ~a 205 (826)
++
T Consensus 359 ~S 360 (494)
T KOG1456|consen 359 VS 360 (494)
T ss_pred ec
Confidence 76
No 105
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0017 Score=74.24 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=65.2
Q ss_pred CCCceEEEcCCCCCCCh------HHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-Ce
Q 003361 126 KPQTKVYVGKIAPTADS------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQ 198 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte------~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~-Gr 198 (826)
.-...|+|.|+|-.-.. ..|..+|+++|+|....++.+. .|+++||.|++|.+..+|..|+..|||+.|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34678999999863322 3567899999999999999885 5669999999999999999999999999998 56
Q ss_pred EEEEEEe
Q 003361 199 ELMLKVD 205 (826)
Q Consensus 199 ~L~V~~a 205 (826)
.+.|..-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 6777543
No 106
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.04 E-value=0.00031 Score=76.49 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=73.1
Q ss_pred CCceEE-EcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVY-VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlf-VgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
+..++| |+|+++.++.++|+..|..||.|..+++..++.+|.+.|||||.|.....+..|+.. +...++|+.+.|..+
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 445555 999999999999999999999999999999999999999999999999999999887 888999999999766
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 262 ~~~ 264 (285)
T KOG4210|consen 262 EPR 264 (285)
T ss_pred CCC
Confidence 543
No 107
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.04 E-value=0.0019 Score=69.93 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCC--ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G--~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
....++|||||-|.+|+.+|.+.+...| .|..+++.-++.+|.++|||+|...+..+....+.+|--..|+|+.-.|-
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3467899999999999999999888777 56778888888999999999999999999999999999999999876653
No 108
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.01 E-value=0.0014 Score=74.16 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=64.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
...-|-+.+|||.||+.+|..||+.|+ |..+.+.+ .+|+..|=|||+|.+.+++..|++. +-..++.+-|.|--+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTA 83 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEcc
Confidence 355677889999999999999999997 77766655 4899999999999999999999985 778888888988644
No 109
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.01 E-value=0.0028 Score=65.46 Aligned_cols=77 Identities=17% Similarity=0.307 Sum_probs=68.5
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 203 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~-Gr~L~V~ 203 (826)
.++..++|+.|||..++.+.|..+|..|+....++++... .+.+||+|.+...+..|...|.|..|- ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 5578999999999999999999999999999999987753 379999999999999999999999887 7778887
Q ss_pred Eec
Q 003361 204 VDQ 206 (826)
Q Consensus 204 ~a~ 206 (826)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 653
No 110
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.96 E-value=0.0037 Score=58.13 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=53.4
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC-----CceeCCeEEEE
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-----KFNIDGQELML 202 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln-----g~~i~Gr~L~V 202 (826)
++.|+|.+++..++-.+|+.+|+.||.|..|.+..+- .-|||-|.+++.|..|+..+. +..|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3678999999999999999999999999999886642 579999999999999997663 45777777777
Q ss_pred EEe--chhHHHHHHHHHhh
Q 003361 203 KVD--QATREYLERYVDKK 219 (826)
Q Consensus 203 ~~a--~~~kk~le~~k~kk 219 (826)
.+- ..-..|+....+.+
T Consensus 75 ~vLeGeeE~~Yw~ki~e~~ 93 (105)
T PF08777_consen 75 EVLEGEEEEEYWKKIIEDR 93 (105)
T ss_dssp E---HHHHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHH
Confidence 663 34466776666544
No 111
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.92 E-value=0.012 Score=68.80 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=67.0
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeE-EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~-~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
-+.+|||-.||..++...+..+|...-.|.. |.|.+.+ +++..+-|||.|....++..|+..-+.+.++.+.|+|.-
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 3678999999999999999999998777766 7777765 889999999999999999999887788888889999964
No 112
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.91 E-value=0.00058 Score=71.41 Aligned_cols=89 Identities=26% Similarity=0.303 Sum_probs=69.7
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCC--------CCCcce----EEEEeCCHHHHHHHHHHhCCce
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN--------GTPKGF----GFCEFESAEGVLRALRLLNKFN 194 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~t--------Gk~kGf----gFVeF~~~e~A~~Al~~Lng~~ 194 (826)
....||+++||+.+...-|++||+.||.|-+|.+.....+ |.+.++ |.|+|.+...|.++...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3567999999999999999999999999999988664333 333332 7799999999999999999999
Q ss_pred eCCeEE-EEEEechhHHHHHHH
Q 003361 195 IDGQEL-MLKVDQATREYLERY 215 (826)
Q Consensus 195 i~Gr~L-~V~~a~~~kk~le~~ 215 (826)
|+|++- .+..+-...+||-.|
T Consensus 153 Iggkk~S~~~~dlWNmKYLprF 174 (278)
T KOG3152|consen 153 IGGKKKSPFRDDLWNMKYLPRF 174 (278)
T ss_pred cCCCCCCchHHhhhhhhhccCc
Confidence 998763 444444555666443
No 113
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.68 E-value=0.0037 Score=67.47 Aligned_cols=88 Identities=18% Similarity=0.267 Sum_probs=67.0
Q ss_pred CceEEEcCCCCCCChHH------HHHHhhcCCceeEEEEeccC-CCCCCcceE--EEEeCCHHHHHHHHHHhCCceeCCe
Q 003361 128 QTKVYVGKIAPTADSDF------VLSVLKVCGTVKSWKRAQYP-SNGTPKGFG--FCEFESAEGVLRALRLLNKFNIDGQ 198 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~------L~~lF~~~G~I~~~ki~~d~-~tGk~kGfg--FVeF~~~e~A~~Al~~Lng~~i~Gr 198 (826)
..-+||-+||+.+..++ -.++|++||.|..+.|-+.. ......+.+ ||+|.+.++|.+||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999887765 24799999999998875532 111222323 9999999999999999999999999
Q ss_pred EEEEEEechhHHHHHHHHH
Q 003361 199 ELMLKVDQATREYLERYVD 217 (826)
Q Consensus 199 ~L~V~~a~~~kk~le~~k~ 217 (826)
.|+..+. +.+|-..|..
T Consensus 194 ~lkatYG--TTKYCtsYLR 210 (480)
T COG5175 194 VLKATYG--TTKYCTSYLR 210 (480)
T ss_pred eEeeecC--chHHHHHHHc
Confidence 9998764 4456666654
No 114
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.55 E-value=0.0023 Score=66.44 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=62.3
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 202 (826)
....+.++|-|++..+...+|...|+++|.+....+ ..+|+||.|+...++..|+..|+|..|.|+.|.|
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 345788999999999999999999999999844333 3379999999999999999999999999999999
No 115
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.30 E-value=0.0037 Score=69.59 Aligned_cols=78 Identities=23% Similarity=0.367 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEecc---CC--CCCC--------cceEEEEeCCHHHHH
Q 003361 118 LPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY---PS--NGTP--------KGFGFCEFESAEGVL 184 (826)
Q Consensus 118 ~p~~~~~~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d---~~--tGk~--------kGfgFVeF~~~e~A~ 184 (826)
+|......-+.+||.+.|||..-.-+-|..||+.||.|+.|+|+.- +. .|.+ +-||||+|...+.|.
T Consensus 221 lp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~ 300 (484)
T KOG1855|consen 221 LPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAAR 300 (484)
T ss_pred CCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHH
Confidence 3444444557999999999999888999999999999999998764 22 2322 457999999999999
Q ss_pred HHHHHhCCcee
Q 003361 185 RALRLLNKFNI 195 (826)
Q Consensus 185 ~Al~~Lng~~i 195 (826)
.|...||....
T Consensus 301 KA~e~~~~e~~ 311 (484)
T KOG1855|consen 301 KARELLNPEQN 311 (484)
T ss_pred HHHHhhchhhh
Confidence 99998865443
No 116
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.09 E-value=0.017 Score=65.63 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=62.7
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeE-EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~-~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
+...|-+.+||+.|++.+|.+||+..-.|.. +.++.+ ..|++.|=|||.|++.+.|+.||.. |-..|+.+-|.|.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF 177 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVF 177 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEee
Confidence 4667889999999999999999997655444 445566 4788999999999999999999985 7788888888874
No 117
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.013 Score=67.01 Aligned_cols=64 Identities=20% Similarity=0.362 Sum_probs=60.0
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhh-cCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHH
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~-~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~ 189 (826)
.+.+|||||+||.-++..+|-.||. -||.|..+-|=+|+.-+-++|-|-|+|.+..+..+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4689999999999999999999998 899999999999987889999999999999999999974
No 118
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.90 E-value=0.019 Score=62.60 Aligned_cols=80 Identities=13% Similarity=0.185 Sum_probs=63.9
Q ss_pred CCCceEEEcCCCC----CCCh-------HHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCce
Q 003361 126 KPQTKVYVGKIAP----TADS-------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 194 (826)
Q Consensus 126 ~~~~tlfVgnLp~----~vte-------~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~ 194 (826)
...+||.|.||-. ..+. ++|.+-+.+||.|.+|.|.- ..+.|.+-|.|.+.++|..||..|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3478899999843 2232 35566688999999998843 3466999999999999999999999999
Q ss_pred eCCeEEEEEEechhH
Q 003361 195 IDGQELMLKVDQATR 209 (826)
Q Consensus 195 i~Gr~L~V~~a~~~k 209 (826)
|+||.|........-
T Consensus 339 fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 339 FDGRQLTASIWDGKT 353 (382)
T ss_pred ecceEEEEEEeCCcc
Confidence 999999988766553
No 119
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.69 E-value=0.028 Score=51.80 Aligned_cols=79 Identities=20% Similarity=0.146 Sum_probs=52.4
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCC-------CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE-
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS-------NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE- 199 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~-------tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~- 199 (826)
.+.|.|-+.|+. .-..+...|++||.|.+..-+.... ......+-.|.|.++.+|.+||.. ||..|+|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 456777788777 4567788899999998875111100 112236889999999999999995 999999865
Q ss_pred EEEEEechh
Q 003361 200 LMLKVDQAT 208 (826)
Q Consensus 200 L~V~~a~~~ 208 (826)
+-|.+.+..
T Consensus 84 vGV~~~~~~ 92 (100)
T PF05172_consen 84 VGVKPCDPA 92 (100)
T ss_dssp EEEEE-HHH
T ss_pred EEEEEcHHh
Confidence 457766443
No 120
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.61 E-value=0.023 Score=63.15 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=68.1
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELMLK 203 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr-~L~V~ 203 (826)
-+++.+|...|||..+++++|+.+|...|..++..... ++.+.++++.+++.++|..|+..||.+.+++. .|+|.
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 45678999999999999999999999999876655432 34557999999999999999999999999855 89999
Q ss_pred Eechh
Q 003361 204 VDQAT 208 (826)
Q Consensus 204 ~a~~~ 208 (826)
|++++
T Consensus 487 FSks~ 491 (492)
T KOG1190|consen 487 FSKST 491 (492)
T ss_pred eeccc
Confidence 98754
No 121
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.54 E-value=0.056 Score=52.92 Aligned_cols=70 Identities=23% Similarity=0.360 Sum_probs=52.2
Q ss_pred CCceEEEcCCCC------CCCh---HHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003361 127 PQTKVYVGKIAP------TADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (826)
Q Consensus 127 ~~~tlfVgnLp~------~vte---~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G 197 (826)
+..||.|.-+.+ .+.+ ..|.+.|..||.|.-++++.+ .-+|+|.+-.+|++|+. |+|..|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 456777766651 2333 267788899999988877653 57999999999999999 69999999
Q ss_pred eEEEEEEe
Q 003361 198 QELMLKVD 205 (826)
Q Consensus 198 r~L~V~~a 205 (826)
+.|.|..-
T Consensus 97 ~~l~i~LK 104 (146)
T PF08952_consen 97 RTLKIRLK 104 (146)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEeC
Confidence 99999753
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.37 E-value=0.034 Score=61.24 Aligned_cols=76 Identities=17% Similarity=0.174 Sum_probs=64.9
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCc-ee--EEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT-VK--SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~-I~--~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
...+|-+.+||+.++.++|..||..|-. |. .|.++.+ ..|.+.|-|||+|.+.+.|..|....|.....++.|.|-
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 3678999999999999999999998873 33 3788887 589999999999999999999998877777667877774
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.98 E-value=0.0096 Score=71.34 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=71.3
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEech
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 207 (826)
...|||.|+|+..|.++|+.+|..+|.+.+..++.. ..|+++|.+||.|.+..++.+++..+++..+.-..+.|.+...
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 567999999999999999999999999999999888 5999999999999999999999988888888777777776554
No 124
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.96 E-value=0.062 Score=62.33 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=52.5
Q ss_pred HHHHHhhcCCceeEEEEecc-C--CCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEech
Q 003361 144 FVLSVLKVCGTVKSWKRAQY-P--SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (826)
Q Consensus 144 ~L~~lF~~~G~I~~~ki~~d-~--~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 207 (826)
+++.=|++||.|.+|.+.+. . ...-..|.-||+|.+.+++.+|+..|+|..|.|+.+...|-..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 45556778999999998876 2 3344567889999999999999999999999999998876543
No 125
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.73 E-value=0.05 Score=60.20 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=61.6
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccC---CCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~---~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
...|.|.||.+.++.+.+..||+..|.|-.+.|+.+. .-......|||.|.|..++..|..+-|-+.|+--.|.+-+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 3489999999999999999999999999999987643 1233456899999999999988775454445444444545
Q ss_pred echhH
Q 003361 205 DQATR 209 (826)
Q Consensus 205 a~~~k 209 (826)
.+...
T Consensus 87 ~~~~~ 91 (479)
T KOG4676|consen 87 GDEVI 91 (479)
T ss_pred CCCCC
Confidence 54443
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.49 E-value=0.074 Score=64.35 Aligned_cols=81 Identities=12% Similarity=0.235 Sum_probs=69.2
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELML 202 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G--r~L~V 202 (826)
..+.+.+|||+|..++....|...|..||.|..|.+-. ..-|++|.|++...++.|+..|-|..|+| +.|.|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 44678899999999999999999999999999876532 23699999999999999999999999995 66999
Q ss_pred EEechhHHH
Q 003361 203 KVDQATREY 211 (826)
Q Consensus 203 ~~a~~~kk~ 211 (826)
.|+...-.+
T Consensus 526 dla~~~~~~ 534 (975)
T KOG0112|consen 526 DLASPPGAT 534 (975)
T ss_pred ccccCCCCC
Confidence 988655333
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.34 E-value=0.006 Score=73.03 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=61.2
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 196 (826)
..+++||.||+..+...+|...|+.+|.+..+.+......|..+|+||++|..+..+.+||....+..++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3578999999999999999999999999888887756678999999999999999999999865555554
No 128
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.21 E-value=0.095 Score=42.61 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=40.9
Q ss_pred ceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHH
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 187 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al 187 (826)
+.|-|.+.+....+.. ...|..||.|..+.+.. ...+.||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEV-LEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHH-HHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 5678888887666554 45788899999988752 2368999999999999985
No 129
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.08 E-value=0.87 Score=52.55 Aligned_cols=77 Identities=22% Similarity=0.329 Sum_probs=52.4
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCce-eEEEEeccCCC-CCCcc---eEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSN-GTPKG---FGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I-~~~ki~~d~~t-Gk~kG---fgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 201 (826)
-.+.||||+||+.++++.|...|..||.+ +.|-.-..... --++| |.|+.|++..++..-|... ..+...+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SEGEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH---hhcccceE
Confidence 37889999999999999999999999986 44532011001 12345 9999999998887665443 23444555
Q ss_pred EEEec
Q 003361 202 LKVDQ 206 (826)
Q Consensus 202 V~~a~ 206 (826)
+++..
T Consensus 335 f~vss 339 (520)
T KOG0129|consen 335 FKVSS 339 (520)
T ss_pred EEEec
Confidence 54443
No 130
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.37 E-value=0.19 Score=53.83 Aligned_cols=63 Identities=22% Similarity=0.134 Sum_probs=50.8
Q ss_pred HHHHHHhhcCCceeEEEEeccCCCCC-CcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 143 DFVLSVLKVCGTVKSWKRAQYPSNGT-PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 143 ~~L~~lF~~~G~I~~~ki~~d~~tGk-~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
+++..-+.+||.|..|.|.-.+..-. -.---||+|+..++|..|+--|||..|+|+.+...|-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 46778889999999998876642211 1234799999999999999999999999999887764
No 131
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.20 E-value=0.08 Score=55.88 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=58.0
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln 191 (826)
...|||.||+..++.+.|..-|+.||.|....++.| ..|++.+=|+|.|.....+..|++.++
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 378999999999999999999999999998888777 689999999999999999999998874
No 132
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=93.20 E-value=0.24 Score=54.76 Aligned_cols=73 Identities=23% Similarity=0.167 Sum_probs=60.9
Q ss_pred EcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEEechhHH
Q 003361 133 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKVDQATRE 210 (826)
Q Consensus 133 VgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~--Gr~L~V~~a~~~kk 210 (826)
|-|--+.+|.+.|..|+..+|+|.++.|.+. +| --|.|+|++.+.|.+|...|||..|- =..|+|.++..++-
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 3455568999999999999999999988764 54 46899999999999999999999886 35688888877643
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.17 E-value=0.11 Score=57.87 Aligned_cols=76 Identities=14% Similarity=0.254 Sum_probs=59.5
Q ss_pred ceEEEcCCCCCCChHHHHHHhhcCCc-eeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEEec
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF-NIDGQELMLKVDQ 206 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~~G~-I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~-~i~Gr~L~V~~a~ 206 (826)
..+|+|||++.++..+|..+|...-. ...-.++.. ||+||.+.+..-|.+|+..|+|. ++.|+.+.|....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999985421 111223333 89999999999999999999985 7889999997765
Q ss_pred hhHHH
Q 003361 207 ATREY 211 (826)
Q Consensus 207 ~~kk~ 211 (826)
..+..
T Consensus 75 ~kkqr 79 (584)
T KOG2193|consen 75 PKKQR 79 (584)
T ss_pred hHHHH
Confidence 54433
No 134
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=93.01 E-value=0.43 Score=48.22 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=57.6
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 196 (826)
....|.|.+||...+..+|+..+...|.|....+.+| |+|.|+|...++..-||+.|+...+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 4678999999999999999999999999999999888 79999999999999999999876554
No 135
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.80 E-value=2.7 Score=45.71 Aligned_cols=67 Identities=25% Similarity=0.298 Sum_probs=49.8
Q ss_pred ceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE-EEE
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL-MLK 203 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L-~V~ 203 (826)
.-|-|-+.|+.. ...|..+|.+||.|+..... ....|-+|-|.+...|.+||.. ||..|+|..+ -|+
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVk 265 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVK 265 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeee
Confidence 345555666544 34677889999999876543 3336999999999999999996 9999998654 443
No 136
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.52 E-value=2.3 Score=51.20 Aligned_cols=7 Identities=29% Similarity=0.359 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 003361 501 IAVAKRR 507 (826)
Q Consensus 501 ~~e~~rr 507 (826)
|+.+|++
T Consensus 413 wErar~q 419 (1118)
T KOG1029|consen 413 WERARRQ 419 (1118)
T ss_pred HHHHHHH
Confidence 3444333
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=92.12 E-value=0.25 Score=54.71 Aligned_cols=79 Identities=23% Similarity=0.257 Sum_probs=60.2
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcC----CceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVC----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~----G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
.-.|-+.+||+.++..++..||..- |.+..+-+++. .+|+..|-|||.|...+.|..||.. |...|+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iG------- 231 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIG------- 231 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHh-------
Confidence 4467788999999999999999732 23445666665 4899999999999999999999975 433332
Q ss_pred EechhHHHHHHHHHhhh
Q 003361 204 VDQATREYLERYVDKKT 220 (826)
Q Consensus 204 ~a~~~kk~le~~k~kk~ 220 (826)
+.||+-|+..+.
T Consensus 232 -----qRYIElFRSTaa 243 (508)
T KOG1365|consen 232 -----QRYIELFRSTAA 243 (508)
T ss_pred -----HHHHHHHHHhHH
Confidence 457777776553
No 138
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=91.81 E-value=0.56 Score=56.30 Aligned_cols=6 Identities=17% Similarity=0.069 Sum_probs=2.5
Q ss_pred HHHHhh
Q 003361 145 VLSVLK 150 (826)
Q Consensus 145 L~~lF~ 150 (826)
+.+.|.
T Consensus 406 ~ee~Fk 411 (830)
T KOG1923|consen 406 FEEQFK 411 (830)
T ss_pred HHHHHH
Confidence 334443
No 139
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=91.75 E-value=0.83 Score=57.90 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=8.4
Q ss_pred CCCCccchhceeccccccc
Q 003361 724 IPKTKEELFSYEINWAVYD 742 (826)
Q Consensus 724 ip~~k~~lf~~~i~w~~~~ 742 (826)
|..-|..++.-.++=..|.
T Consensus 874 ~~~~~~~~~~~~~~~~~~~ 892 (1021)
T PTZ00266 874 INAKKASIYNNTCDEGTLS 892 (1021)
T ss_pred hhhhhhhhhhhcccccccc
Confidence 3334444554444444443
No 140
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.83 E-value=0.55 Score=56.79 Aligned_cols=75 Identities=19% Similarity=0.157 Sum_probs=61.5
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEEe
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKVD 205 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~--Gr~L~V~~a 205 (826)
..+.++-|.+-..+-..|-.+|+.||.|.++...++- ..+.|+|...++|..|+.+|+|..+- |-+.+|.++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 4456666777778888999999999999998776663 57999999999999999999998654 777888877
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 544
No 141
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=90.82 E-value=0.061 Score=65.05 Aligned_cols=79 Identities=9% Similarity=0.086 Sum_probs=66.4
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
....|||+|||...+++.+|+..|..+|.|.+|.|-+- .-+....||||.|.+...+..|...+.|..|+.-.+.+.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 34789999999999999999999999999999987443 34566689999999999999999889888877555555554
No 142
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.27 E-value=0.13 Score=56.34 Aligned_cols=87 Identities=22% Similarity=0.326 Sum_probs=64.7
Q ss_pred CceEEEcCCCCCCChHHHH---HHhhcCCceeEEEEeccCC----CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003361 128 QTKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~---~lF~~~G~I~~~ki~~d~~----tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L 200 (826)
.+-+||-+|+..+-+..+. ..|++||.|.++.+..++. .|.+ .-++|+|...++|..||...+|+.++|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 4568999999877665433 6899999999998877652 2222 338999999999999999999999999986
Q ss_pred EEEEechhHHHHHHHHH
Q 003361 201 MLKVDQATREYLERYVD 217 (826)
Q Consensus 201 ~V~~a~~~kk~le~~k~ 217 (826)
+..+ .+.+|-..|..
T Consensus 156 ka~~--gttkycs~~l~ 170 (327)
T KOG2068|consen 156 KASL--GTTKYCSFYLR 170 (327)
T ss_pred HHhh--CCCcchhHHhh
Confidence 5543 34445555543
No 143
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.82 E-value=1.4 Score=43.04 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=56.7
Q ss_pred CCCCceEEEcCCCCCCCh----HHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003361 125 EKPQTKVYVGKIAPTADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte----~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L 200 (826)
+++-.||.|.=|..++.. ..+...++.||+|.++.+.- +.-|.|.|.+..+|-.|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 456778888876655433 35556678999999987632 25799999999999999999876 6668888
Q ss_pred EEEEech
Q 003361 201 MLKVDQA 207 (826)
Q Consensus 201 ~V~~a~~ 207 (826)
...|.+.
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 8887643
No 144
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=86.93 E-value=5.6 Score=46.48 Aligned_cols=70 Identities=23% Similarity=0.299 Sum_probs=57.2
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhh--cCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLK--VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELM 201 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~--~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng--~~i~Gr~L~ 201 (826)
...|.|.+.-||..+..++++.||. .|-++++|.+..+- -=||+|++..+|+.|...|.. ..|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3467889999999999999999997 59999999987652 359999999999999987743 456677665
Q ss_pred E
Q 003361 202 L 202 (826)
Q Consensus 202 V 202 (826)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 4
No 145
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=86.60 E-value=6.4 Score=45.98 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCCCCCc
Q 003361 301 NPLPPPPPQTTADGSGISNSELPAKARDGDSD 332 (826)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 332 (826)
+|.|+..+..+..|+.+....+.+....+++.
T Consensus 548 kpGpsnRsR~tksgsRG~ertvvmDkskg~pv 579 (940)
T KOG4661|consen 548 KPGPSNRSRSTKSGSRGKERTVVMDKSKGDPV 579 (940)
T ss_pred CCCccccccccccCCCccceeeeeccCCCCce
Confidence 34444444444445444444444444444443
No 146
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=86.33 E-value=2.2 Score=38.11 Aligned_cols=56 Identities=7% Similarity=0.093 Sum_probs=41.3
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln 191 (826)
..-||--..|......+|.+||+.||.|. |..+-+ .-|||...+.+.|..|+..++
T Consensus 8 RdHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE--TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 33455555999999999999999999874 444455 479999999999999998875
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=85.91 E-value=1.4 Score=51.22 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=47.3
Q ss_pred CCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee---C-CeEEEEEEe--chhHHHHHHHHH
Q 003361 152 CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---D-GQELMLKVD--QATREYLERYVD 217 (826)
Q Consensus 152 ~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i---~-Gr~L~V~~a--~~~kk~le~~k~ 217 (826)
.|.---+.++.|=.+....|||||.|.+++.+..+.+++||+.. + .+.+.+.|| +.+..+++.++.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqn 484 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQN 484 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhc
Confidence 44444556777766777889999999999999999999999854 3 344566665 344456666554
No 148
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.65 E-value=1.8 Score=44.35 Aligned_cols=61 Identities=20% Similarity=0.141 Sum_probs=46.4
Q ss_pred hHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEEechh
Q 003361 142 SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKVDQAT 208 (826)
Q Consensus 142 e~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln--g~~i~Gr~L~V~~a~~~ 208 (826)
...|+.+|..|+.+..|..... -+-..|.|.+.+.|..|...|+ +..+.|..|+|.+++.+
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3689999999999999987664 2567899999999999999999 99999999999888544
No 149
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=84.61 E-value=3.6 Score=34.75 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=44.4
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcC---CceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVC---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~---G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L 190 (826)
+..|+|.++. .++.++|+.+|..| .....+.++-| .-|=|.|.+...|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-------CcEEEEECCHHHHHHHHHcC
Confidence 4679999985 68888999999988 23557777777 35778999999999999764
No 150
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=82.93 E-value=0.71 Score=49.02 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=51.4
Q ss_pred HHHHhh-cCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEechh
Q 003361 145 VLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (826)
Q Consensus 145 L~~lF~-~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~~ 208 (826)
|...|. +||.|..++|..+ ..-...|=.||.|...++|.+|+..|||..+.|++|...+..-+
T Consensus 85 ~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 333344 9999999977665 34456788999999999999999999999999999998876543
No 151
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=82.71 E-value=1.8 Score=44.12 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=51.1
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhc-CCceeEEEEec---cCCCC--CCcceEEEEeCCHHHHHHHHHHhCCceeC---C
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQ---YPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID---G 197 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~-~G~I~~~ki~~---d~~tG--k~kGfgFVeF~~~e~A~~Al~~Lng~~i~---G 197 (826)
....|.|.+||+++|++++...++. +|....|..+. ...+- ....-|||.|.+.+.+..-+..++|+.|. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4679999999999999999998886 77664444332 11111 12356899999999999999999998764 2
Q ss_pred --eEEEEEEech
Q 003361 198 --QELMLKVDQA 207 (826)
Q Consensus 198 --r~L~V~~a~~ 207 (826)
....|.++..
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2345666665
No 152
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=82.53 E-value=0.71 Score=52.66 Aligned_cols=74 Identities=7% Similarity=0.004 Sum_probs=60.9
Q ss_pred CceEEEcCCCCCCCh-HHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 128 QTKVYVGKIAPTADS-DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 128 ~~tlfVgnLp~~vte-~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
.+.|-+-.++++.+. .+|...|..||.|..|.+-.. .-.|.|+|.+..+|-.|.. .+|..|+++.|+|.|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 556666677777655 599999999999999987543 2568999999999988887 49999999999999976
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 445 ps 446 (526)
T KOG2135|consen 445 PS 446 (526)
T ss_pred CC
Confidence 54
No 153
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=80.83 E-value=2.3 Score=30.91 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 003361 782 KASQMLELLQTILDDEAEMFVLKM 805 (826)
Q Consensus 782 ~p~~l~~~l~~~lde~a~~fv~kl 805 (826)
+-..|++++..+|+.+|+.||...
T Consensus 4 ~~D~lLDeId~vLe~NAe~FV~~f 27 (33)
T TIGR03687 4 GVDDLLDEIDGVLESNAEEFVRGF 27 (33)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346899999999999999999764
No 154
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.11 E-value=8 Score=33.47 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=34.6
Q ss_pred CCCChHHHHHHhhcCC-----ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 138 PTADSDFVLSVLKVCG-----TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 138 ~~vte~~L~~lF~~~G-----~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
..++..+|..+|...+ .|-.+.|.. .|.||+-... .+..++..|++..+.|+.|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4677778888887664 445666643 4899987755 778899999999999999999754
No 155
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=75.76 E-value=2.1 Score=46.90 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=67.7
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..+++|+|++.+.+.+..+..+|..+|.+..+.+........++||+++.|...+.+..|+.....+.+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47899999999999999999999999988888877766788999999999999999999998644356667666665554
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 44
No 156
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=75.01 E-value=21 Score=33.65 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=48.1
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCC-ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 196 (826)
...+.+..+|+.++.++|..+.+.+- .|..++|+++. .-++-...+.|.+...|..-...+||..+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34445555555666667776666655 45667777762 235667899999999999999999999765
No 157
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=71.91 E-value=1.1e+02 Score=37.15 Aligned_cols=9 Identities=22% Similarity=-0.064 Sum_probs=3.6
Q ss_pred CHHHHHHHH
Q 003361 179 SAEGVLRAL 187 (826)
Q Consensus 179 ~~e~A~~Al 187 (826)
+.-.++.|+
T Consensus 81 n~~~~L~ae 89 (811)
T KOG4364|consen 81 NSMVALLAE 89 (811)
T ss_pred ccccchhhh
Confidence 333344444
No 158
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=70.93 E-value=22 Score=32.70 Aligned_cols=74 Identities=14% Similarity=0.303 Sum_probs=54.8
Q ss_pred HhhhhhhhHHHHHHhhcCcchh--HHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 003361 746 LHERMRPWISKKITEFLGEEET--TLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETG 819 (826)
Q Consensus 746 ~~~~~~pwi~kki~e~lG~ee~--~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~klWr~li~e~~~~~~g 819 (826)
+.+.||-.|.+|...+=-+-|+ .+-+||+=.+....++..++.+|...+|.=...++...-.-..|...+...|
T Consensus 8 ~~~nLK~iVaEkL~~l~NFnEDv~YVAEyIvlLisNggs~esivqELssLFD~vs~~~l~~VVQtaF~ale~Lq~G 83 (107)
T PF11517_consen 8 ITENLKVIVAEKLKTLPNFNEDVNYVAEYIVLLISNGGSVESIVQELSSLFDSVSTEALTDVVQTAFFALEALQQG 83 (107)
T ss_dssp HHHHHHHHHHHHHTTSTT--SSHHHHHHHHHHHHHTT--HHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999998887555554 4889999999999999999999999999766666666666777777776665
No 159
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=69.76 E-value=11 Score=43.50 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=17.5
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhc
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKV 151 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~ 151 (826)
..++.++|-.-=+-.++...|..+|..
T Consensus 303 ~r~~~t~W~s~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 303 SRPCATLWASLDPVSVDTARLEHLFES 329 (817)
T ss_pred ccccchhhhccCcceecHHHHHHHHHH
Confidence 344556665544455777789999973
No 160
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=66.81 E-value=19 Score=38.58 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=47.4
Q ss_pred eEEEcCCCCCCChHH---HHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003361 130 KVYVGKIAPTADSDF---VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (826)
Q Consensus 130 tlfVgnLp~~vte~~---L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 201 (826)
..|++++-..+...- +...|+-|-.+...+++.+ ..+...+++|+.|........+-..-++..|+-..++
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR 171 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVR 171 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCccee
Confidence 344555444444332 2567777777888888887 4788899999999887777766665566666555533
No 161
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.52 E-value=21 Score=42.17 Aligned_cols=77 Identities=10% Similarity=0.089 Sum_probs=57.5
Q ss_pred CCCCceEEEcCCCC-CCChHHHHHHhhcC----CceeEEEEeccC----------CCCC---------------------
Q 003361 125 EKPQTKVYVGKIAP-TADSDFVLSVLKVC----GTVKSWKRAQYP----------SNGT--------------------- 168 (826)
Q Consensus 125 ~~~~~tlfVgnLp~-~vte~~L~~lF~~~----G~I~~~ki~~d~----------~tGk--------------------- 168 (826)
..+.++|-|.|+.| .+...+|.-+|+.| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 44578999999999 46677999888865 589999765311 1222
Q ss_pred ----------------CcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003361 169 ----------------PKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (826)
Q Consensus 169 ----------------~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 201 (826)
..-||.|+|.+...|......++|+++...-..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~ 299 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANK 299 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccce
Confidence 124788999999999999999999998844333
No 162
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=64.84 E-value=6.5 Score=49.37 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=22.4
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW 158 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ 158 (826)
...+++|-.+-..+..+.|+.+.+.||...++
T Consensus 71 kak~~~v~t~ka~~PpeHLrki~~~~sdm~s~ 102 (2365)
T COG5178 71 KAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSV 102 (2365)
T ss_pred hhhheeeeccCCCCCHHHHHhhhCccccchhh
Confidence 35667777777777777888887777755544
No 163
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.96 E-value=19 Score=41.46 Aligned_cols=67 Identities=7% Similarity=-0.006 Sum_probs=56.9
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCC-ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 196 (826)
++.|+|-.+|..++--+|..|+..|- .|..+++++|.. -.+-...|.|.+..+|..-...+||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 88999999999999999999998664 678899998632 23345789999999999999999999876
No 164
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=61.94 E-value=22 Score=41.78 Aligned_cols=12 Identities=33% Similarity=0.243 Sum_probs=5.6
Q ss_pred EeCCHHHHHHHH
Q 003361 176 EFESAEGVLRAL 187 (826)
Q Consensus 176 eF~~~e~A~~Al 187 (826)
+.-+-.+|..||
T Consensus 326 ec~sW~~avaaL 337 (582)
T PF03276_consen 326 ECGSWASAVAAL 337 (582)
T ss_pred ccccHHHHHHHH
Confidence 333444555554
No 165
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=61.73 E-value=32 Score=42.27 Aligned_cols=14 Identities=7% Similarity=-0.183 Sum_probs=7.8
Q ss_pred cccccccccccCCC
Q 003361 6 VRKVGRLQILHKRT 19 (826)
Q Consensus 6 ~~~~~~~~~l~~~~ 19 (826)
...+.++|-++-+.
T Consensus 544 ~s~~~~~P~~ap~s 557 (756)
T KOG2375|consen 544 SSPSIFLPRVAPAS 557 (756)
T ss_pred ccCCCCCCCcCccc
Confidence 34556666666333
No 166
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=61.19 E-value=27 Score=29.87 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=42.4
Q ss_pred CCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003361 139 TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (826)
Q Consensus 139 ~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 202 (826)
.++-.+|+..|..|+- .. |..+ .| || ||.|.+..+|.+|....||..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d-~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDD-RT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEec-CC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5677899999999972 22 2233 23 43 89999999999999999999998877664
No 167
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.64 E-value=52 Score=40.98 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=12.0
Q ss_pred hhhHHHHHHhhcCc----chhHHHHHHHHh
Q 003361 751 RPWISKKITEFLGE----EETTLVDYIVSS 776 (826)
Q Consensus 751 ~pwi~kki~e~lG~----ee~~lv~~i~~~ 776 (826)
-+|- .-+.+||.+ ....-|||+|..
T Consensus 970 ~~~~-~~~~~~lved~~~~~~sY~dyL~~~ 998 (1007)
T KOG1984|consen 970 DGSE-VEFSEYLVEDRGRNISSYVDYLCEL 998 (1007)
T ss_pred Cchh-hhhhhhhhcccccCccccchHHHHH
Confidence 4443 344444443 233456666654
No 168
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=57.30 E-value=2.5e+02 Score=29.44 Aligned_cols=10 Identities=50% Similarity=0.637 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 003361 502 AVAKRRAEEE 511 (826)
Q Consensus 502 ~e~~rr~~e~ 511 (826)
++.+++.+++
T Consensus 163 eeekr~~eE~ 172 (216)
T PF11600_consen 163 EEEKRKKEEE 172 (216)
T ss_pred HHHHHhhHHH
Confidence 3334444444
No 169
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=55.26 E-value=74 Score=38.93 Aligned_cols=9 Identities=11% Similarity=-0.064 Sum_probs=5.4
Q ss_pred hcCCceeEE
Q 003361 150 KVCGTVKSW 158 (826)
Q Consensus 150 ~~~G~I~~~ 158 (826)
-+.|.|..+
T Consensus 1070 ~~~~diIei 1078 (1106)
T KOG0162|consen 1070 FKKGDIIEI 1078 (1106)
T ss_pred ccCCCEEEE
Confidence 355666665
No 170
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=54.97 E-value=1.2e+02 Score=35.56 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=13.8
Q ss_pred ceEEEcCCCCCCChHHHHHHhhcCCceeEE
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSW 158 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ 158 (826)
..+-+..|+..-..+.|..-...-|.++.+
T Consensus 482 ~~ve~t~~~~~dgR~~LmaqIRqG~~Lk~v 511 (569)
T KOG3671|consen 482 KKVETTALSSGDGRDALMAQIRQGGQLKKV 511 (569)
T ss_pred cceeeccCcCcccHHHHHHHHHhccccccc
Confidence 345555666444444444433333444433
No 171
>PHA03378 EBNA-3B; Provisional
Probab=54.51 E-value=1.1e+02 Score=37.33 Aligned_cols=9 Identities=11% Similarity=0.283 Sum_probs=4.8
Q ss_pred ChHHHHHHh
Q 003361 141 DSDFVLSVL 149 (826)
Q Consensus 141 te~~L~~lF 149 (826)
+..-|+.|+
T Consensus 821 ~k~ilrqll 829 (991)
T PHA03378 821 TKQILRQLL 829 (991)
T ss_pred HHHHHHHHh
Confidence 344566655
No 172
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=52.69 E-value=5.4 Score=34.27 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHH
Q 003361 781 VKASQMLELLQTILDDEAEMFVLK 804 (826)
Q Consensus 781 ~~p~~l~~~l~~~lde~a~~fv~k 804 (826)
.+-..||++|..||+.+|+.||..
T Consensus 39 ~~vD~lLDeID~vLE~NAeeFVr~ 62 (69)
T PF05639_consen 39 DDVDDLLDEIDSVLETNAEEFVRS 62 (69)
T ss_dssp CCHHHHHHHHTTTSSSC-------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999975
No 173
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=52.28 E-value=16 Score=43.73 Aligned_cols=63 Identities=14% Similarity=0.359 Sum_probs=51.5
Q ss_pred hhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003361 748 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 810 (826)
Q Consensus 748 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~klWr~li 810 (826)
.+++--+.....+|||-.-+.++..|+..|........=+.+|..||.++.+.||..||-.|-
T Consensus 22 ~k~k~~~kddl~~~~g~~t~~~~~~~f~~~~r~~~~~~ea~e~~~~~ed~~~~~~a~~~~~~~ 84 (681)
T KOG3702|consen 22 AKLKEMVKDDLKEYMGDYTDDILVEYFIVLLRNGRRKEEANELKIFLEDDSDSFVAWLWDHLA 84 (681)
T ss_pred hhhhhhhhhhHHhhcCCchhhhhhHHHHHHHhccccccchhhhhhhhhhhhhhhhhhhhhhHH
Confidence 578888999999999998666666666666655555555559999999999999999999887
No 174
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=51.85 E-value=9.7 Score=41.90 Aligned_cols=20 Identities=10% Similarity=0.199 Sum_probs=12.9
Q ss_pred EEEEEEechhHHHHHHHHHh
Q 003361 199 ELMLKVDQATREYLERYVDK 218 (826)
Q Consensus 199 ~L~V~~a~~~kk~le~~k~k 218 (826)
.+.+.+-++...+...|..-
T Consensus 162 FmYiRYtqpp~dLw~WyEpy 181 (453)
T KOG2888|consen 162 FMYIRYTQPPADLWDWYEPY 181 (453)
T ss_pred eeEEeecCChhHHHHHhhhh
Confidence 45677777777776666543
No 175
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.60 E-value=77 Score=39.55 Aligned_cols=11 Identities=9% Similarity=0.307 Sum_probs=5.3
Q ss_pred CeEEEEEEech
Q 003361 197 GQELMLKVDQA 207 (826)
Q Consensus 197 Gr~L~V~~a~~ 207 (826)
|++....++-.
T Consensus 358 gr~f~Cn~C~~ 368 (1007)
T KOG1984|consen 358 GRKFICNFCGS 368 (1007)
T ss_pred CceEEecCCCc
Confidence 44555554433
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.17 E-value=1.2e+02 Score=38.75 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=6.3
Q ss_pred hHHHHHHhhcCC
Q 003361 142 SDFVLSVLKVCG 153 (826)
Q Consensus 142 e~~L~~lF~~~G 153 (826)
...+..+...|+
T Consensus 952 ~~~~e~~~~r~~ 963 (1049)
T KOG0307|consen 952 ETFLEELLQRCS 963 (1049)
T ss_pred HHHHHHHHHHhh
Confidence 344555555665
No 177
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.96 E-value=1e+02 Score=38.33 Aligned_cols=7 Identities=43% Similarity=0.724 Sum_probs=4.1
Q ss_pred EEEeCCH
Q 003361 174 FCEFESA 180 (826)
Q Consensus 174 FVeF~~~ 180 (826)
||+|-+.
T Consensus 231 FV~fid~ 237 (887)
T KOG1985|consen 231 FVEFIDQ 237 (887)
T ss_pred eEEecCC
Confidence 5666554
No 178
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=42.63 E-value=7.5 Score=46.71 Aligned_cols=7 Identities=0% Similarity=0.169 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 003361 210 EYLERYV 216 (826)
Q Consensus 210 k~le~~k 216 (826)
+.|..|.
T Consensus 546 kVirvWe 552 (877)
T KOG0151|consen 546 KVIRVWE 552 (877)
T ss_pred HHHHHHH
Confidence 3333333
No 179
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=41.94 E-value=21 Score=36.47 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=54.4
Q ss_pred CCceEEEcCCCCCCChH-----HHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 003361 127 PQTKVYVGKIAPTADSD-----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 200 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~-----~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr-~L 200 (826)
-.+++++++|+..+..+ ....+|..|-...-..+++. .++--|.|.++..|..|...+++..|.|. .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 46778999998765443 34556666655544444432 25566899999999999999999999988 77
Q ss_pred EEEEechh
Q 003361 201 MLKVDQAT 208 (826)
Q Consensus 201 ~V~~a~~~ 208 (826)
..-+++..
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 77776543
No 180
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=41.10 E-value=86 Score=36.40 Aligned_cols=7 Identities=43% Similarity=0.572 Sum_probs=3.1
Q ss_pred EEcCCCC
Q 003361 132 YVGKIAP 138 (826)
Q Consensus 132 fVgnLp~ 138 (826)
|-|+|++
T Consensus 604 ~PGGi~~ 610 (654)
T COG5180 604 YPGGIPF 610 (654)
T ss_pred CCCcccc
Confidence 3355543
No 181
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=40.14 E-value=55 Score=29.07 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=39.6
Q ss_pred HHHHHhhcCcchhHHHHHHHHhhhccC---CHHHHHHHHHHhhhHHHHHHHHH
Q 003361 755 SKKITEFLGEEETTLVDYIVSSTQDHV---KASQMLELLQTILDDEAEMFVLK 804 (826)
Q Consensus 755 ~kki~e~lG~ee~~lv~~i~~~l~~~~---~p~~l~~~l~~~lde~a~~fv~k 804 (826)
..||..+|| .|++.-++++..|+... +-..|+..|.++|..++..=...
T Consensus 9 ~~Kvd~iL~-~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~e~~~~Lld 60 (80)
T cd07354 9 SRKVDAILG-DDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQTEAHKKLLD 60 (80)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCcHHHHHHHH
Confidence 578999999 68889999999997543 66789999999999887654433
No 182
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=40.06 E-value=7.6 Score=40.60 Aligned_cols=77 Identities=16% Similarity=0.356 Sum_probs=64.5
Q ss_pred CCCCceEEEcC----CCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003361 125 EKPQTKVYVGK----IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (826)
Q Consensus 125 ~~~~~tlfVgn----Lp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L 200 (826)
.....+++.|+ |...++.+.+...|+..|.+..+++.++ .+|.++.|+|+.|--....-.++....+..+--+++
T Consensus 77 ~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~-~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 77 DEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTD-NDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred chhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccc-ccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 33467888898 7788999999999999999999999888 479999999999998888888988888776655555
Q ss_pred EE
Q 003361 201 ML 202 (826)
Q Consensus 201 ~V 202 (826)
.+
T Consensus 156 ~~ 157 (267)
T KOG4454|consen 156 TI 157 (267)
T ss_pred cc
Confidence 44
No 183
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=38.02 E-value=12 Score=45.70 Aligned_cols=10 Identities=10% Similarity=0.441 Sum_probs=6.0
Q ss_pred CCceEEEcCC
Q 003361 127 PQTKVYVGKI 136 (826)
Q Consensus 127 ~~~tlfVgnL 136 (826)
.+..+|+|++
T Consensus 144 ~~qR~f~gvv 153 (1194)
T KOG4246|consen 144 EPQRRFAGVV 153 (1194)
T ss_pred Ccceeeehhh
Confidence 4556677654
No 184
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=37.41 E-value=6.3 Score=46.09 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=56.3
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G 197 (826)
.|+|||.||+++++-.+|..+|..+-.+..+.+...-......-++.|+|.--....-|+-+||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 5789999999999999999999998877777665443344556789999998888888888888876543
No 185
>PHA03378 EBNA-3B; Provisional
Probab=36.63 E-value=2.1e+02 Score=34.88 Aligned_cols=7 Identities=14% Similarity=0.653 Sum_probs=2.7
Q ss_pred ccccccc
Q 003361 8 KVGRLQI 14 (826)
Q Consensus 8 ~~~~~~~ 14 (826)
+.+.+++
T Consensus 668 ~~~hi~~ 674 (991)
T PHA03378 668 QIGHIPY 674 (991)
T ss_pred ccCCcCC
Confidence 3343443
No 186
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.19 E-value=45 Score=36.02 Aligned_cols=57 Identities=21% Similarity=0.429 Sum_probs=45.6
Q ss_pred hHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHh-hhHH--HHHHHHHHHHHH
Q 003361 753 WISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTI-LDDE--AEMFVLKMWRML 809 (826)
Q Consensus 753 wi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~-lde~--a~~fv~klWr~l 809 (826)
-|+.....|||+.|+.|..-|.+.-++..+|.++.+.|... |.+= ...||..||-.+
T Consensus 263 kindllesymGirD~eLA~~i~e~~~~~~n~~efaeaideseL~~F~FpDefVfdvWg~I 322 (334)
T KOG3938|consen 263 KINDLLESYMGIRDTELASTIWETGKDKENPDEFAEAIDESELGDFAFPDEFVFDVWGAI 322 (334)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHhccccCCHHHHHHHhhhcccccccCCcceeeehhhhh
Confidence 56777788999999999999999999988988888777665 4432 467999999654
No 187
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=34.61 E-value=6.5e+02 Score=27.55 Aligned_cols=8 Identities=38% Similarity=0.667 Sum_probs=4.0
Q ss_pred eEEEEeCC
Q 003361 172 FGFCEFES 179 (826)
Q Consensus 172 fgFVeF~~ 179 (826)
.-||.|+-
T Consensus 77 id~iifea 84 (445)
T KOG2891|consen 77 IDFIIFEA 84 (445)
T ss_pred cceEEeeH
Confidence 44555543
No 188
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=33.65 E-value=18 Score=44.21 Aligned_cols=8 Identities=25% Similarity=0.870 Sum_probs=5.5
Q ss_pred CcceEEEE
Q 003361 169 PKGFGFCE 176 (826)
Q Consensus 169 ~kGfgFVe 176 (826)
.--||||.
T Consensus 157 ~DtygfVD 164 (1194)
T KOG4246|consen 157 TDTYGFVD 164 (1194)
T ss_pred cccccccc
Confidence 33689985
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=33.24 E-value=47 Score=38.55 Aligned_cols=62 Identities=19% Similarity=0.418 Sum_probs=43.8
Q ss_pred hhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccC----CHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 003361 748 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV----KASQMLELLQTILDDEAEMFVLKMWRML 809 (826)
Q Consensus 748 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~----~p~~l~~~l~~~lde~a~~fv~klWr~l 809 (826)
+.|+-|...-..=+--..-..|-.||+-.|++.+ =+..+++.|..||-+++..||.||+..|
T Consensus 7 d~Lk~wlsd~lePi~Dadpsala~yvlal~kkdkse~elk~~~~~ql~vfl~~et~pfv~K~fda~ 72 (526)
T KOG2135|consen 7 DALKDWLSDALEPICDADPSALAKYVLALLKKDKSEKELKALCIEQLDVFLRQETIPFVDKLFDAL 72 (526)
T ss_pred HHHHHHHhhhccCcccCChHHHHHHHHHHhhcCCCchhhhhhhHHhcchhhhcccchHHHHHHHhh
Confidence 3456666543332222233448899999998654 3466789999999999999999998654
No 190
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=33.14 E-value=1.3e+02 Score=32.94 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=36.6
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCce-eEEEEeccCCCCCCcceEEEEeCCHHH
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEG 182 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I-~~~ki~~d~~tGk~kGfgFVeF~~~e~ 182 (826)
-.+-|||+|||..+...+|+.-+...|.+ .++.+ ..+.|-||..|-+...
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRKG 379 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCccC
Confidence 35669999999999999999999887754 22222 1234678999977644
No 191
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.98 E-value=1.7e+02 Score=35.60 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=8.1
Q ss_pred ceeCCeEEEEEEe
Q 003361 193 FNIDGQELMLKVD 205 (826)
Q Consensus 193 ~~i~Gr~L~V~~a 205 (826)
+.+.|..|.+.+.
T Consensus 496 ~~~~~~~l~l~~~ 508 (585)
T PRK14950 496 VSVEKNTLTLSFK 508 (585)
T ss_pred eeecCCEEEEecC
Confidence 5566666666654
No 192
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=29.36 E-value=74 Score=28.72 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=33.4
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeC
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFE 178 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~ 178 (826)
..-|||||++..+-+.-...+...++.-. +.++.. ..+ ..||+|-++-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~-a~m~~~-~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGS-AVMVWS-DNN-EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCcc-EEEEEc-cCC-CCCEEEEEeC
Confidence 45699999999998887777777655433 334443 233 8899998873
No 193
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.15 E-value=85 Score=37.69 Aligned_cols=15 Identities=27% Similarity=0.149 Sum_probs=5.9
Q ss_pred cccchhhhhcccccc
Q 003361 24 PFLQQTMLATECSLA 38 (826)
Q Consensus 24 pq~QQq~~~q~~~~a 38 (826)
||+++.+..+|..++
T Consensus 122 pq~~~~pa~~Pqqma 136 (728)
T KOG4592|consen 122 PQQQQHPAHQPQQMA 136 (728)
T ss_pred cccccCCCCCCcccC
Confidence 444443333343333
No 194
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=28.92 E-value=72 Score=32.60 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=47.1
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHH
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~ 189 (826)
......+++++++..++...+..+|..+|.+....+...........+.|+.+.....+..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhcc
Confidence 44578899999999999999999999999997777766543344555555555555555544443
No 195
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=28.40 E-value=1.4e+02 Score=27.01 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=47.1
Q ss_pred HhhhhhhhHHHHHHhh--cCc---chhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHH
Q 003361 746 LHERMRPWISKKITEF--LGE---EETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVL 803 (826)
Q Consensus 746 ~~~~~~pwi~kki~e~--lG~---ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~ 803 (826)
..+.|+|||..|+.|| ||. ..+.|=+|+++..-++..|..|-+-+..||-=.+-.||.
T Consensus 5 ~~~~v~p~l~sK~eEf~~lGY~~vt~~dlw~yl~~~~WK~~~~~~l~e~V~DIlsl~~~~~m~ 67 (87)
T PF13797_consen 5 WREQVEPALQSKAEEFHLLGYESVTEEDLWSYLTEKKWKKKKPPRLHELVNDILSLKPNDYMN 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHhccCCCcCHHHHHHHHHcCCHHHHHH
Confidence 3467899999999986 565 478899999999988888888888888888766766664
No 196
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=28.20 E-value=6.3e+02 Score=25.46 Aligned_cols=80 Identities=33% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH---------HHHHhHHHHHHHHHHhhhhccchhhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHHH
Q 003361 428 EYREREREKERQY---------EKEKEKERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADEVREE 498 (826)
Q Consensus 428 e~rER~r~~~re~---------ekerere~er~r~~e~~~d~dddr~d~rk~~r~~~~~~R~~~r~rE~e~d~~dR~rE~ 498 (826)
+.|+++|.++.++ ||.+.+..++.+.+ ..+..+...- .|.+......-+.+..+.+++
T Consensus 47 eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~---~EE~~EE~Rl----------~rere~~q~~~E~E~~~~~~K 113 (157)
T PF15236_consen 47 EERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRR---REEEEEEERL----------AREREELQRQFEEEQRKQREK 113 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003361 499 EEIAVAKRRAEEEQLQQQQRDA 520 (826)
Q Consensus 499 eE~~e~~rr~~e~~~~~~~~~~ 520 (826)
+|....+....-+.+++++..|
T Consensus 114 Ee~~~~k~~~l~e~~q~Aqe~A 135 (157)
T PF15236_consen 114 EEEQTRKTQELYEAMQRAQEEA 135 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 197
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.05 E-value=6e+02 Score=27.85 Aligned_cols=10 Identities=20% Similarity=0.262 Sum_probs=4.8
Q ss_pred ccCCCCCCCc
Q 003361 15 LHKRTTSTTP 24 (826)
Q Consensus 15 l~~~~~~~~p 24 (826)
-+|.++.+++
T Consensus 151 k~G~~p~Pg~ 160 (338)
T KOG0917|consen 151 KNGETPQPGP 160 (338)
T ss_pred hCCCCCCCCC
Confidence 3455554444
No 198
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=27.22 E-value=1.6e+02 Score=25.09 Aligned_cols=51 Identities=12% Similarity=0.319 Sum_probs=40.5
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHH-HHHhhhHHHHHHHHHHHH
Q 003361 752 PWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLEL-LQTILDDEAEMFVLKMWR 807 (826)
Q Consensus 752 pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~-l~~~lde~a~~fv~klWr 807 (826)
+++..-+.-++....+.+..++-..+....++..++.+ |.++|.+ |-.+|.
T Consensus 3 ~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~-----iG~~w~ 54 (79)
T PF02607_consen 3 ELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE-----IGELWE 54 (79)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHHHHh
Confidence 56677777778888888999999999888899999988 8998886 556665
No 199
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=26.59 E-value=1.7e+02 Score=31.37 Aligned_cols=34 Identities=6% Similarity=0.181 Sum_probs=29.5
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW 158 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ 158 (826)
.....++|+-|||..+++..|..+.+.||.+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3457899999999999999999999999976654
No 200
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=26.22 E-value=2.1e+02 Score=26.14 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhhhhcccc
Q 003361 784 SQMLELLQTILDDE--AEMFVLKMWRMLIFEIKKVETGLAL 822 (826)
Q Consensus 784 ~~l~~~l~~~lde~--a~~fv~klWr~li~e~~~~~~g~~~ 822 (826)
++++..+.....+. -..|+..||++||=|+.+.+..++.
T Consensus 51 ~~vl~~~~~~a~~~gl~p~~~e~i~~~i~~esir~q~~~~~ 91 (94)
T TIGR01795 51 DYQIARLRRLAIDAGLDPEFAEKFLNFIVTEVIKHHERIAD 91 (94)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455554444433 4679999999999999998877654
No 201
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=25.83 E-value=61 Score=41.43 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=5.3
Q ss_pred hhHHHHHHHHh
Q 003361 766 ETTLVDYIVSS 776 (826)
Q Consensus 766 e~~lv~~i~~~ 776 (826)
|+-|.|||+.+
T Consensus 1030 DpnlAdYi~ak 1040 (2365)
T COG5178 1030 DPNLADYIIAK 1040 (2365)
T ss_pred CchHHHHHhhc
Confidence 44455555443
No 202
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=25.74 E-value=26 Score=34.57 Aligned_cols=18 Identities=33% Similarity=0.713 Sum_probs=14.0
Q ss_pred CccccCccCCCCCCcchh
Q 003361 585 KRTAVPSVFHVEDDDDAD 602 (826)
Q Consensus 585 kr~~v~~vf~~~dde~~~ 602 (826)
+.++|+.|||.+||+|..
T Consensus 88 ~~~~va~~Fn~d~d~e~e 105 (150)
T PF15473_consen 88 KKLSVAAVFNEDDDSEPE 105 (150)
T ss_pred CcchhhhhhccccccChh
Confidence 466899999998777644
No 203
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=24.94 E-value=52 Score=31.71 Aligned_cols=8 Identities=50% Similarity=0.991 Sum_probs=3.0
Q ss_pred HHHhHHHH
Q 003361 442 KEKEKERE 449 (826)
Q Consensus 442 kerere~e 449 (826)
+|||+.+|
T Consensus 38 rEReRsRE 45 (146)
T PF11671_consen 38 RERERSRE 45 (146)
T ss_pred hhhhhhcc
Confidence 33333333
No 204
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=24.90 E-value=85 Score=28.99 Aligned_cols=50 Identities=22% Similarity=0.279 Sum_probs=34.1
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCH
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA 180 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~ 180 (826)
..-||||+++..+.+.--..+...||. -++.++.. +....||+|.++-+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~--~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWA--TNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEc--CCCCCCcEEEecCCC
Confidence 456999999998888766666666654 33444442 334559999987654
No 205
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.54 E-value=3.1e+02 Score=33.37 Aligned_cols=10 Identities=10% Similarity=0.395 Sum_probs=3.8
Q ss_pred CCCceEEEcC
Q 003361 126 KPQTKVYVGK 135 (826)
Q Consensus 126 ~~~~tlfVgn 135 (826)
.++.-+|.-|
T Consensus 596 ~pP~p~Fsvn 605 (861)
T KOG3161|consen 596 TPPSPLFSVN 605 (861)
T ss_pred CCCCceeeee
Confidence 3333344333
No 206
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.14 E-value=3.7e+02 Score=33.70 Aligned_cols=10 Identities=20% Similarity=0.119 Sum_probs=4.8
Q ss_pred HHHHHhHHHH
Q 003361 420 YERCLKDWEY 429 (826)
Q Consensus 420 y~er~r~we~ 429 (826)
|.-|.=.||.
T Consensus 529 ~Ltr~~~fea 538 (887)
T KOG1985|consen 529 YLTRKIGFEA 538 (887)
T ss_pred Hhhhhhhhhe
Confidence 4444455553
No 207
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=24.04 E-value=5.9 Score=44.85 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=61.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
-.+.+-|.|||+....+.|..|+..||.|..|..+. +..-...--|+|...+.+..||..|||..|....+.|.|-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvn---t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN---TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc---cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 356799999999999999999999999999886532 1112233457899999999999999999999988888754
No 208
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=22.35 E-value=1.8e+02 Score=31.83 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhH-------HHHHHHHHHHHHHHH
Q 003361 784 SQMLELLQTILDD-------EAEMFVLKMWRMLIF 811 (826)
Q Consensus 784 ~~l~~~l~~~lde-------~a~~fv~klWr~li~ 811 (826)
-+|.++|+..|.+ ++..||.+|||.|+.
T Consensus 190 ~ElsEnLekLl~ea~erS~~~~~~~~~~lvrklL~ 224 (282)
T PF08926_consen 190 YELSENLEKLLQEAHERSESEEVAFVTQLVRKLLI 224 (282)
T ss_dssp HHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHH
Confidence 4788899888873 457799999998873
No 209
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=22.11 E-value=4.3e+02 Score=32.77 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=25.6
Q ss_pred EEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeC
Q 003361 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFE 178 (826)
Q Consensus 131 lfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~ 178 (826)
..+|+|+ .|....+.--.++||.|..++----.....+.|-||..|.
T Consensus 179 ~~fgr~~-~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~d 225 (793)
T KOG1881|consen 179 CLFGRLG-GCDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYD 225 (793)
T ss_pred EEecccC-CCccccccCcccccceeeeccCCCCCccccCCCCceEEee
Confidence 4466776 5555555555678887776643111011233566676663
No 210
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=21.80 E-value=1.1e+03 Score=25.91 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=26.5
Q ss_pred CceEEEcCCCCC------------CChHHHHHHhhcCCceeEEEEe
Q 003361 128 QTKVYVGKIAPT------------ADSDFVLSVLKVCGTVKSWKRA 161 (826)
Q Consensus 128 ~~tlfVgnLp~~------------vte~~L~~lF~~~G~I~~~ki~ 161 (826)
+.|||+.+||-. -+++-|+..|..||.|..|.|+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 567777777742 4567899999999999988764
No 211
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=21.64 E-value=23 Score=41.77 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=14.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHH
Q 003361 482 KRIREKEEDLADEVREEEEIAVA 504 (826)
Q Consensus 482 ~r~rE~e~d~~dR~rE~eE~~e~ 504 (826)
+.+-+.+..+.|++++.+++.+.
T Consensus 270 e~~~~~~~ieed~~~~~~~il~k 292 (752)
T KOG0670|consen 270 EEEAESEIIEEDRRKREEEILEK 292 (752)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHH
Confidence 44556666677776666665555
No 212
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=21.48 E-value=2.1e+02 Score=33.70 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=4.9
Q ss_pred ccccCChHHHh
Q 003361 611 VPIDYSTEELQ 621 (826)
Q Consensus 611 vpi~y~~~~~~ 621 (826)
||-|-.||-+.
T Consensus 752 ~~~d~~DEImd 762 (817)
T KOG1925|consen 752 LPSDTSDEIMD 762 (817)
T ss_pred CCCChHHHHHH
Confidence 33344555444
No 213
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=21.32 E-value=3.1e+02 Score=24.33 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=44.2
Q ss_pred hhhHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003361 751 RPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 810 (826)
Q Consensus 751 ~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~klWr~li 810 (826)
.+=+..++..+|-..|-.-+-+.++....+.+-..|+-.|..+||.-|.--+...=|.||
T Consensus 5 ~r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lI 64 (78)
T cd07347 5 AREFSQQVDHLLTDAEREQVTRALERYHQERNVDDLVRDLYLVLDTPAKLPLLQFLRQVI 64 (78)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCcHhHHHHHHHHHHHc
Confidence 455677888899666655555555666667799999999999999999855555555555
No 214
>PF15208 Rab15_effector: Rab15 effector
Probab=20.50 E-value=87 Score=32.71 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=19.6
Q ss_pred ccccchhhHhhhhhhhHHHHHHhhcCcchhH
Q 003361 738 WAVYDKHELHERMRPWISKKITEFLGEEETT 768 (826)
Q Consensus 738 w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~ 768 (826)
+++|...++ ..+.|..||||++|+.
T Consensus 21 cev~S~avv------hAsqklkEYLgFedP~ 45 (236)
T PF15208_consen 21 CEVVSQAVV------HASQKLKEYLGFEDPL 45 (236)
T ss_pred HHHHHHHHH------HHHHHHHHHhCccCcH
Confidence 667766666 4578899999999984
No 215
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.05 E-value=2.2e+02 Score=32.59 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=46.3
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCc-eeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHH
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~-I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~ 189 (826)
-.+.|=|.++|...-.++|..+|+.||. --.|+++-+ ..+|..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 4678889999999888999999999974 345666666 4899999999999999874
Done!