Query 003361
Match_columns 826
No_of_seqs 504 out of 2854
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 22:39:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v53_A RNA-binding protein 25; 100.0 5.9E-38 2E-42 288.9 10.0 106 716-821 13-118 (119)
2 1mp1_A Ser/Arg-related nuclear 99.9 2.2E-22 7.5E-27 184.0 8.0 92 726-822 5-98 (111)
3 3pgw_S U1-70K; protein-RNA com 99.8 4.6E-19 1.6E-23 201.3 15.4 84 125-208 99-182 (437)
4 1x4q_A U4/U6 small nuclear rib 99.8 2E-19 6.8E-24 160.2 7.4 68 746-813 14-81 (92)
5 4fxv_A ELAV-like protein 1; RN 99.7 9E-18 3.1E-22 152.2 10.6 82 126-207 17-98 (99)
6 3s8s_A Histone-lysine N-methyl 99.7 7E-17 2.4E-21 149.2 12.5 84 127-210 5-88 (110)
7 3n9u_C Cleavage and polyadenyl 99.7 1E-16 3.4E-21 157.4 12.2 82 127-208 54-137 (156)
8 2khc_A Testis-specific RNP-typ 99.7 2.9E-16 9.8E-21 145.8 14.4 81 125-205 37-117 (118)
9 2lxi_A RNA-binding protein 10; 99.7 1.9E-17 6.7E-22 147.5 3.6 81 128-208 1-83 (91)
10 3ns6_A Eukaryotic translation 99.7 7.1E-17 2.4E-21 146.2 7.3 87 126-212 4-97 (100)
11 2e5h_A Zinc finger CCHC-type a 99.6 9.6E-16 3.3E-20 136.2 13.0 80 127-206 15-94 (94)
12 2lkz_A RNA-binding protein 5; 99.6 2.2E-16 7.5E-21 142.2 8.8 82 126-207 7-94 (95)
13 3bs9_A Nucleolysin TIA-1 isofo 99.6 5E-16 1.7E-20 135.9 10.7 81 127-207 5-85 (87)
14 3mdf_A Peptidyl-prolyl CIS-tra 99.6 5E-16 1.7E-20 135.3 10.4 81 126-206 5-85 (85)
15 2la6_A RNA-binding protein FUS 99.6 4.9E-16 1.7E-20 139.9 10.5 80 127-206 12-99 (99)
16 3md1_A Nuclear and cytoplasmic 99.6 4.7E-16 1.6E-20 134.8 9.9 81 128-208 1-81 (83)
17 2cq4_A RNA binding motif prote 99.6 5.2E-16 1.8E-20 143.3 10.6 82 126-208 23-104 (114)
18 2x1f_A MRNA 3'-END-processing 99.6 7.1E-16 2.4E-20 138.0 11.1 84 127-210 1-84 (96)
19 2cpz_A CUG triplet repeat RNA- 99.6 1.1E-15 3.6E-20 141.4 12.3 83 126-208 23-105 (115)
20 2cqc_A Arginine/serine-rich sp 99.6 1.1E-15 3.7E-20 136.0 11.4 82 126-207 13-94 (95)
21 1x5u_A Splicing factor 3B subu 99.6 9.3E-16 3.2E-20 139.3 11.1 83 126-208 13-95 (105)
22 2dgs_A DAZ-associated protein 99.6 1.1E-15 3.6E-20 137.5 11.1 82 126-208 8-89 (99)
23 2dnz_A Probable RNA-binding pr 99.6 8.9E-16 3.1E-20 136.7 10.4 81 127-207 4-84 (95)
24 1u6f_A Tcubp1, RNA-binding pro 99.6 2.6E-15 8.8E-20 143.4 14.0 83 125-207 39-121 (139)
25 1oo0_B CG8781-PA, drosophila Y 99.6 1.2E-15 4E-20 139.9 11.0 82 126-207 24-105 (110)
26 1whw_A Hypothetical protein ri 99.6 1.4E-15 4.9E-20 136.5 11.4 83 126-208 6-88 (99)
27 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1E-15 3.5E-20 138.2 10.4 83 126-208 10-92 (102)
28 2dnm_A SRP46 splicing factor; 99.6 8.3E-16 2.8E-20 139.2 9.6 82 126-207 11-92 (103)
29 2jrs_A RNA-binding protein 39; 99.6 8.2E-16 2.8E-20 141.3 9.7 84 125-208 23-106 (108)
30 1p27_B RNA-binding protein 8A; 99.6 9.1E-16 3.1E-20 139.6 9.7 82 126-207 21-102 (106)
31 3p5t_L Cleavage and polyadenyl 99.6 2.5E-16 8.5E-21 139.5 5.7 80 129-208 2-83 (90)
32 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.1E-16 1.1E-20 141.7 6.4 81 126-208 17-98 (100)
33 2cq0_A Eukaryotic translation 99.6 1.7E-15 5.7E-20 137.2 11.1 83 126-208 13-95 (103)
34 4f25_A Polyadenylate-binding p 99.6 9.5E-16 3.2E-20 142.3 9.7 79 128-208 5-83 (115)
35 1x5t_A Splicing factor 3B subu 99.6 9.5E-16 3.3E-20 136.8 9.2 82 127-208 4-86 (96)
36 2dgo_A Cytotoxic granule-assoc 99.6 2.3E-15 7.7E-20 139.1 11.9 83 125-207 12-94 (115)
37 1x4h_A RNA-binding protein 28; 99.6 2E-15 6.9E-20 138.3 11.2 83 126-208 13-101 (111)
38 3ulh_A THO complex subunit 4; 99.6 2.1E-15 7.2E-20 137.4 11.2 80 126-206 27-106 (107)
39 1x5s_A Cold-inducible RNA-bind 99.6 1.7E-15 5.7E-20 136.8 10.0 83 126-208 10-92 (102)
40 2dgp_A Bruno-like 4, RNA bindi 99.6 1.5E-15 5.3E-20 138.0 9.9 83 126-208 11-96 (106)
41 2cph_A RNA binding motif prote 99.6 2.2E-15 7.7E-20 137.1 10.9 84 125-208 12-97 (107)
42 2do4_A Squamous cell carcinoma 99.6 2.9E-15 9.9E-20 134.9 11.5 82 126-208 15-96 (100)
43 2ywk_A Putative RNA-binding pr 99.6 1.6E-15 5.4E-20 135.1 9.6 80 126-206 14-93 (95)
44 3s7r_A Heterogeneous nuclear r 99.6 2.7E-15 9.1E-20 131.5 10.6 80 125-205 8-87 (87)
45 2nlw_A Eukaryotic translation 99.6 9.8E-16 3.4E-20 139.8 7.7 84 126-211 13-103 (105)
46 2dnh_A Bruno-like 5, RNA bindi 99.6 3.1E-15 1.1E-19 135.8 10.9 82 126-208 13-97 (105)
47 2div_A TRNA selenocysteine ass 99.6 1.8E-15 6E-20 136.0 9.1 82 126-207 7-93 (99)
48 2cpe_A RNA-binding protein EWS 99.6 2.5E-15 8.7E-20 138.3 10.4 83 125-207 12-102 (113)
49 3ex7_B RNA-binding protein 8A; 99.6 2.2E-15 7.5E-20 141.4 9.9 83 126-208 20-102 (126)
50 2cqi_A Nucleolysin TIAR; RNA r 99.6 6.9E-15 2.3E-19 133.2 12.8 82 125-208 12-93 (103)
51 2cpf_A RNA binding motif prote 99.6 1.7E-15 5.7E-20 135.8 8.6 83 126-208 3-88 (98)
52 1s79_A Lupus LA protein; RRM, 99.6 1.3E-15 4.6E-20 139.0 8.1 80 126-207 9-88 (103)
53 2kt5_A RNA and export factor-b 99.6 1.5E-14 5.1E-19 135.6 15.4 82 126-208 33-114 (124)
54 2dng_A Eukaryotic translation 99.6 3.4E-15 1.2E-19 135.3 10.7 81 126-208 13-93 (103)
55 4a8x_A RNA-binding protein wit 99.6 2.4E-15 8.1E-20 131.7 9.3 81 127-207 3-84 (88)
56 1wi8_A EIF-4B, eukaryotic tran 99.6 3.9E-15 1.3E-19 135.1 10.9 80 127-208 14-94 (104)
57 2m2b_A RNA-binding protein 10; 99.6 1.1E-15 3.7E-20 145.1 7.2 82 126-208 21-108 (131)
58 2rs2_A Musashi-1, RNA-binding 99.6 3.4E-15 1.2E-19 137.3 10.2 83 125-208 22-104 (109)
59 3ucg_A Polyadenylate-binding p 99.6 3.4E-15 1.2E-19 131.1 9.8 79 128-207 6-84 (89)
60 2err_A Ataxin-2-binding protei 99.6 3.1E-15 1.1E-19 137.5 9.9 81 125-207 26-106 (109)
61 2kxn_B Transformer-2 protein h 99.6 2.2E-15 7.7E-20 143.0 9.1 83 126-208 44-126 (129)
62 1x4e_A RNA binding motif, sing 99.6 7.5E-16 2.6E-20 134.5 5.3 80 126-205 3-82 (85)
63 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 7.4E-15 2.5E-19 139.8 12.5 80 126-205 61-140 (140)
64 2fy1_A RNA-binding motif prote 99.6 3.9E-15 1.3E-19 138.5 10.1 81 126-207 5-85 (116)
65 2cqp_A RNA-binding protein 12; 99.6 3E-15 1E-19 134.2 8.9 82 126-207 13-94 (98)
66 2cqd_A RNA-binding region cont 99.6 8.3E-15 2.8E-19 135.6 12.0 82 125-207 14-95 (116)
67 1x4b_A Heterogeneous nuclear r 99.6 4E-15 1.4E-19 137.7 9.8 82 126-208 25-106 (116)
68 2dgx_A KIAA0430 protein; RRM d 99.6 7.6E-15 2.6E-19 131.6 11.2 78 127-207 8-89 (96)
69 2d9p_A Polyadenylate-binding p 99.6 5.3E-15 1.8E-19 133.9 10.3 81 126-208 13-93 (103)
70 2cq3_A RNA-binding protein 9; 99.6 1.4E-14 4.8E-19 131.1 13.0 82 125-208 12-93 (103)
71 2dgv_A HnRNP M, heterogeneous 99.6 4.1E-15 1.4E-19 131.6 9.2 81 126-208 6-86 (92)
72 2do0_A HnRNP M, heterogeneous 99.6 8.1E-15 2.8E-19 135.0 11.5 81 126-207 13-93 (114)
73 2mss_A Protein (musashi1); RNA 99.6 1.9E-15 6.4E-20 128.7 6.6 75 130-205 1-75 (75)
74 1p1t_A Cleavage stimulation fa 99.6 2.4E-15 8E-20 136.2 7.6 82 127-208 7-88 (104)
75 2ek1_A RNA-binding protein 12; 99.6 2.3E-15 7.9E-20 134.0 7.2 80 127-206 14-93 (95)
76 2a3j_A U1 small nuclear ribonu 99.6 5.2E-15 1.8E-19 140.3 10.1 84 126-212 27-114 (127)
77 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.4E-15 2.2E-19 145.3 11.0 83 126-208 70-152 (165)
78 2dhg_A TRNA selenocysteine ass 99.6 3.1E-15 1E-19 135.6 7.7 81 126-207 7-89 (104)
79 2cqg_A TDP-43, TAR DNA-binding 99.6 1.4E-14 4.9E-19 131.1 12.0 82 125-208 12-93 (103)
80 2dgw_A Probable RNA-binding pr 99.6 1.2E-14 4.2E-19 128.5 11.2 80 126-208 8-87 (91)
81 2cpy_A RNA-binding protein 12; 99.6 8.3E-15 2.8E-19 135.6 10.5 81 126-208 13-94 (114)
82 2wbr_A GW182, gawky, LD47780P; 99.6 1.1E-14 3.8E-19 128.6 10.6 74 127-206 6-79 (89)
83 2dh8_A DAZ-associated protein 99.6 6.2E-15 2.1E-19 133.9 9.3 83 125-208 13-95 (105)
84 2jwn_A Embryonic polyadenylate 99.6 8.2E-15 2.8E-19 137.1 10.3 80 127-207 35-114 (124)
85 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.5E-15 8.6E-20 128.4 6.3 76 129-205 1-76 (77)
86 2kn4_A Immunoglobulin G-bindin 99.6 1.1E-14 3.6E-19 142.0 11.5 82 127-208 69-150 (158)
87 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.2E-14 4.2E-19 141.6 11.5 82 126-207 37-118 (156)
88 2ki2_A SS-DNA binding protein 99.6 1.6E-15 5.6E-20 133.8 4.5 79 129-208 2-80 (90)
89 1wel_A RNA-binding protein 12; 99.6 7.7E-15 2.6E-19 137.8 9.3 82 126-208 23-104 (124)
90 1x4a_A Splicing factor, argini 99.5 3.1E-14 1E-18 130.3 13.0 79 126-207 20-98 (109)
91 2db1_A Heterogeneous nuclear r 99.5 1.1E-14 3.8E-19 135.9 10.1 80 126-207 15-97 (118)
92 2dis_A Unnamed protein product 99.5 8.1E-15 2.8E-19 133.9 8.7 82 127-208 7-92 (109)
93 1x5o_A RNA binding motif, sing 99.5 2.9E-14 1E-18 131.4 12.3 82 125-207 22-111 (114)
94 1fj7_A Nucleolin RBD1, protein 99.5 2.1E-15 7E-20 136.1 4.3 80 126-207 15-94 (101)
95 2cpi_A CCR4-NOT transcription 99.5 1.1E-14 3.9E-19 134.1 9.1 82 127-208 14-101 (111)
96 1nu4_A U1A RNA binding domain; 99.5 8.4E-15 2.9E-19 130.8 7.9 83 126-211 6-92 (97)
97 3pgw_A U1-A; protein-RNA compl 99.5 1.4E-13 4.7E-18 146.2 18.6 77 125-206 204-281 (282)
98 3lqv_A PRE-mRNA branch site pr 99.5 2.2E-14 7.4E-19 132.5 10.5 80 127-209 7-86 (115)
99 2krb_A Eukaryotic translation 99.5 4.7E-15 1.6E-19 128.5 5.7 73 128-202 1-80 (81)
100 2j8a_A Histone-lysine N-methyl 99.5 2.3E-14 7.7E-19 134.9 10.6 90 128-217 2-107 (136)
101 1sjq_A Polypyrimidine tract-bi 99.5 1.3E-14 4.5E-19 132.9 8.7 75 127-207 15-91 (105)
102 2lea_A Serine/arginine-rich sp 99.5 6.4E-15 2.2E-19 140.9 6.9 83 126-208 45-127 (135)
103 3q2s_C Cleavage and polyadenyl 99.5 8.4E-15 2.9E-19 152.5 7.7 82 127-208 67-150 (229)
104 2cq1_A PTB-like protein L; RRM 99.5 5.4E-14 1.8E-18 128.0 11.9 77 125-207 12-90 (101)
105 2xnq_A Nuclear polyadenylated 99.5 3.9E-14 1.3E-18 127.4 10.9 74 126-207 20-94 (97)
106 2fc9_A NCL protein; structure 99.5 4.4E-14 1.5E-18 127.3 11.2 80 125-208 12-91 (101)
107 3r27_A HnRNP L, heterogeneous 99.5 3E-14 1E-18 129.3 10.0 77 126-208 19-97 (100)
108 1x4d_A Matrin 3; structural ge 99.5 1.8E-14 6.1E-19 131.5 8.5 77 126-208 13-92 (102)
109 1iqt_A AUF1, heterogeneous nuc 99.5 6.6E-15 2.3E-19 125.2 5.3 75 130-205 1-75 (75)
110 1wg5_A Heterogeneous nuclear r 99.5 3.1E-14 1E-18 129.6 10.0 80 126-207 13-93 (104)
111 2lmi_A GRSF-1, G-rich sequence 99.5 1E-14 3.5E-19 133.5 6.6 81 125-207 8-91 (107)
112 2cpx_A Hypothetical protein FL 99.5 1.4E-14 4.7E-19 133.7 7.4 83 126-208 23-105 (115)
113 4f02_A Polyadenylate-binding p 99.5 4.1E-14 1.4E-18 144.9 11.3 82 127-208 14-95 (213)
114 1x4c_A Splicing factor, argini 99.5 5.6E-14 1.9E-18 128.7 11.1 74 127-207 14-92 (108)
115 1wez_A HnRNP H', FTP-3, hetero 99.5 1.8E-14 6.2E-19 131.1 7.7 78 127-207 14-91 (102)
116 2fc8_A NCL protein; structure 99.5 4.9E-14 1.7E-18 127.1 10.4 80 126-208 13-92 (102)
117 2jvo_A Nucleolar protein 3; nu 99.5 3.6E-14 1.2E-18 130.4 9.6 76 125-208 28-103 (108)
118 2f3j_A RNA and export factor b 99.5 1E-13 3.4E-18 138.8 13.5 82 126-208 86-167 (177)
119 2ytc_A PRE-mRNA-splicing facto 99.5 5.7E-14 1.9E-18 122.3 10.2 74 126-205 10-84 (85)
120 2hgl_A HNRPF protein, heteroge 99.5 2.6E-14 8.8E-19 137.1 8.4 79 127-207 43-124 (136)
121 2dnn_A RNA-binding protein 12; 99.5 6.1E-14 2.1E-18 129.4 10.5 78 127-207 15-92 (109)
122 2la4_A Nuclear and cytoplasmic 99.5 4.2E-14 1.4E-18 127.5 8.8 75 127-207 26-100 (101)
123 2jvr_A Nucleolar protein 3; RN 99.5 6.1E-14 2.1E-18 129.9 10.0 78 127-208 27-105 (111)
124 2dnq_A RNA-binding protein 4B; 99.5 7.6E-14 2.6E-18 123.2 9.6 75 126-208 6-80 (90)
125 1x4g_A Nucleolysin TIAR; struc 99.5 7.7E-14 2.6E-18 127.8 9.8 77 126-208 23-99 (109)
126 2xs2_A Deleted in azoospermia- 99.5 2E-14 6.7E-19 129.9 5.7 79 127-208 8-86 (102)
127 3egn_A RNA-binding protein 40; 99.5 1.4E-14 4.9E-19 139.1 4.9 83 126-208 43-130 (143)
128 1fjc_A Nucleolin RBD2, protein 99.5 3.4E-14 1.2E-18 126.7 7.0 78 125-207 13-90 (96)
129 2e5j_A Methenyltetrahydrofolat 99.5 9.4E-14 3.2E-18 124.5 9.9 77 127-208 18-94 (97)
130 2ad9_A Polypyrimidine tract-bi 99.5 5.7E-14 2E-18 131.6 8.7 75 127-207 30-106 (119)
131 2dgt_A RNA-binding protein 30; 99.5 1.8E-13 6.1E-18 121.4 11.4 76 125-208 7-82 (92)
132 3md3_A Nuclear and cytoplasmic 99.5 1.8E-13 6.1E-18 132.5 12.1 80 127-206 86-165 (166)
133 1why_A Hypothetical protein ri 99.5 1.8E-13 6E-18 122.6 11.1 76 127-208 16-93 (97)
134 1x4f_A Matrin 3; structural ge 99.5 8.8E-14 3E-18 129.0 9.3 78 125-208 22-102 (112)
135 2cpj_A Non-POU domain-containi 99.5 1.1E-13 3.6E-18 124.5 9.3 76 126-207 13-88 (99)
136 2dgu_A Heterogeneous nuclear r 99.5 2E-13 6.7E-18 123.7 11.0 75 126-208 9-83 (103)
137 2lcw_A RNA-binding protein FUS 99.2 4.4E-15 1.5E-19 137.6 0.0 83 126-208 5-95 (116)
138 1wex_A Hypothetical protein (r 99.5 1.3E-13 4.4E-18 126.2 9.6 76 126-207 13-90 (104)
139 1wf1_A RNA-binding protein RAL 99.5 2.9E-13 9.9E-18 124.1 11.7 74 126-207 25-99 (110)
140 2i2y_A Fusion protein consists 99.5 1.3E-13 4.5E-18 133.4 9.9 77 127-208 72-148 (150)
141 2hvz_A Splicing factor, argini 99.5 5.9E-14 2E-18 126.5 6.8 75 129-208 1-75 (101)
142 1whx_A Hypothetical protein ri 99.5 1.1E-13 3.7E-18 127.7 8.7 75 127-207 9-83 (111)
143 2dnp_A RNA-binding protein 14; 99.5 2.4E-13 8.1E-18 120.0 10.3 75 126-208 7-81 (90)
144 1fxl_A Paraneoplastic encephal 99.5 2.1E-13 7E-18 132.1 10.7 81 128-208 2-82 (167)
145 2cpd_A Apobec-1 stimulating pr 99.4 5E-13 1.7E-17 120.1 12.2 75 126-208 13-89 (99)
146 1b7f_A Protein (SXL-lethal pro 99.4 1.9E-13 6.3E-18 133.0 9.8 81 127-207 2-82 (168)
147 2e44_A Insulin-like growth fac 99.4 1.8E-13 6.2E-18 122.0 8.8 78 127-208 14-92 (96)
148 2g4b_A Splicing factor U2AF 65 99.4 2.6E-13 8.8E-18 132.7 10.5 79 127-205 93-171 (172)
149 2kvi_A Nuclear polyadenylated 99.4 1.5E-13 5E-18 123.1 7.9 75 126-208 8-83 (96)
150 1wg1_A KIAA1579 protein, homol 99.4 3.5E-13 1.2E-17 118.6 8.8 74 127-207 4-77 (88)
151 2e5g_A U6 snRNA-specific termi 99.4 3E-13 1E-17 120.5 8.3 75 127-207 7-81 (94)
152 1l3k_A Heterogeneous nuclear r 99.4 4.2E-13 1.4E-17 134.0 10.1 82 126-208 11-92 (196)
153 2cqh_A IGF-II mRNA-binding pro 99.4 3.5E-13 1.2E-17 119.6 8.4 74 127-207 7-82 (93)
154 2dha_A FLJ20171 protein; RRM d 99.4 2E-13 6.8E-18 128.7 7.1 80 126-207 21-104 (123)
155 2hgm_A HNRPF protein, heteroge 99.4 2.8E-13 9.4E-18 128.3 7.5 78 127-207 41-120 (126)
156 2qfj_A FBP-interacting repress 99.4 4.8E-13 1.6E-17 135.6 9.8 82 127-208 124-205 (216)
157 2hgn_A Heterogeneous nuclear r 99.4 9.9E-14 3.4E-18 133.5 4.4 78 127-207 45-122 (139)
158 4f02_A Polyadenylate-binding p 99.4 7E-13 2.4E-17 135.7 11.0 80 127-208 102-181 (213)
159 3d2w_A TAR DNA-binding protein 99.4 7E-13 2.4E-17 117.5 9.5 74 126-208 9-84 (89)
160 2dnl_A Cytoplasmic polyadenyla 99.4 4.2E-13 1.4E-17 124.1 8.3 77 126-205 6-85 (114)
161 1x5p_A Negative elongation fac 99.4 1.4E-12 4.8E-17 116.8 11.5 74 127-208 14-87 (97)
162 2yh0_A Splicing factor U2AF 65 99.4 1.2E-12 4E-17 130.9 12.2 83 126-208 112-194 (198)
163 2cq2_A Hypothetical protein LO 99.4 5.8E-13 2E-17 123.7 9.0 76 127-208 24-106 (114)
164 2cjk_A Nuclear polyadenylated 99.4 3.1E-13 1.1E-17 131.4 7.6 80 127-207 86-165 (167)
165 3beg_B Splicing factor, argini 99.4 4.1E-13 1.4E-17 124.5 7.7 73 127-206 15-92 (115)
166 2diu_A KIAA0430 protein; struc 99.4 3.2E-13 1.1E-17 120.5 6.5 72 128-209 8-85 (96)
167 1b7f_A Protein (SXL-lethal pro 99.4 1.3E-12 4.4E-17 127.0 10.6 79 127-205 88-168 (168)
168 1l3k_A Heterogeneous nuclear r 99.4 1.1E-12 3.6E-17 131.0 10.1 81 127-208 103-183 (196)
169 3md3_A Nuclear and cytoplasmic 99.4 1E-12 3.6E-17 127.0 9.5 78 129-207 1-78 (166)
170 3tyt_A Heterogeneous nuclear r 99.4 1.5E-12 5.1E-17 133.1 10.5 76 127-207 3-79 (205)
171 2hzc_A Splicing factor U2AF 65 99.4 1.3E-12 4.5E-17 114.0 8.7 71 126-203 4-85 (87)
172 2qfj_A FBP-interacting repress 99.4 1.1E-12 3.8E-17 132.9 9.3 82 127-208 27-108 (216)
173 1sjr_A Polypyrimidine tract-bi 99.4 1.6E-12 5.3E-17 128.1 9.8 78 127-208 45-124 (164)
174 1fxl_A Paraneoplastic encephal 99.4 1.6E-12 5.6E-17 125.7 9.7 79 127-205 87-167 (167)
175 2pe8_A Splicing factor 45; RRM 99.4 3.2E-12 1.1E-16 117.1 11.0 81 127-207 7-93 (105)
176 3nmr_A Cugbp ELAV-like family 99.3 1.4E-12 4.9E-17 127.3 9.0 79 127-206 94-175 (175)
177 3zzy_A Polypyrimidine tract-bi 99.3 2.9E-12 9.9E-17 121.7 10.4 77 127-208 27-106 (130)
178 2cjk_A Nuclear polyadenylated 99.3 1.9E-12 6.6E-17 125.8 8.9 80 127-208 2-81 (167)
179 2e5i_A Heterogeneous nuclear r 99.3 8.5E-12 2.9E-16 117.7 12.6 75 128-208 25-102 (124)
180 3pgw_A U1-A; protein-RNA compl 99.3 4.5E-12 1.5E-16 134.5 11.4 83 125-210 6-92 (282)
181 2bz2_A Negative elongation fac 99.3 3E-12 1E-16 120.0 8.7 74 127-208 38-111 (121)
182 2voo_A Lupus LA protein; RNA-b 99.3 3.4E-12 1.2E-16 129.3 9.7 79 127-207 108-186 (193)
183 3nmr_A Cugbp ELAV-like family 99.3 3.3E-12 1.1E-16 124.8 9.2 81 127-207 2-87 (175)
184 1fje_B Nucleolin RBD12, protei 99.3 6.6E-12 2.3E-16 123.3 10.3 76 127-207 98-173 (175)
185 1wf0_A TDP-43, TAR DNA-binding 99.3 2.4E-12 8.1E-17 113.1 6.3 74 127-207 4-77 (88)
186 2ghp_A U4/U6 snRNA-associated 99.3 7E-12 2.4E-16 133.7 10.0 82 125-207 207-290 (292)
187 2adc_A Polypyrimidine tract-bi 99.3 6.1E-12 2.1E-16 130.1 8.6 77 127-208 33-110 (229)
188 3smz_A Protein raver-1, ribonu 99.3 1.4E-11 4.8E-16 130.8 11.4 81 127-207 94-174 (284)
189 3u1l_A PRE-mRNA-splicing facto 99.2 7.4E-12 2.5E-16 130.8 7.7 78 125-208 131-229 (240)
190 3tyt_A Heterogeneous nuclear r 99.2 1.1E-11 3.7E-16 126.7 8.7 78 126-205 121-204 (205)
191 3smz_A Protein raver-1, ribonu 99.2 1.7E-11 5.8E-16 130.2 10.2 83 126-209 182-265 (284)
192 1fje_B Nucleolin RBD12, protei 99.2 3.7E-12 1.3E-16 125.0 4.3 81 126-208 11-91 (175)
193 2dit_A HIV TAT specific factor 99.2 2.9E-11 9.8E-16 111.5 8.9 78 127-208 14-102 (112)
194 3v4m_A Splicing factor U2AF 65 99.2 4.8E-11 1.6E-15 109.2 9.9 83 126-208 3-97 (105)
195 3sde_A Paraspeckle component 1 99.2 4.8E-11 1.7E-15 125.9 11.2 76 126-207 20-95 (261)
196 1qm9_A Polypyrimidine tract-bi 99.2 1.9E-11 6.4E-16 122.7 7.3 76 128-208 3-79 (198)
197 1qm9_A Polypyrimidine tract-bi 99.2 6.2E-11 2.1E-15 118.9 9.9 77 126-207 118-196 (198)
198 1jmt_A Splicing factor U2AF 35 99.2 1.8E-11 6.3E-16 111.7 5.0 73 132-205 19-103 (104)
199 2ghp_A U4/U6 snRNA-associated 99.1 5.9E-11 2E-15 126.5 9.3 81 127-208 116-197 (292)
200 3sde_A Paraspeckle component 1 99.1 7.3E-11 2.5E-15 124.5 9.6 80 127-207 95-178 (261)
201 3ue2_A Poly(U)-binding-splicin 99.1 1.2E-10 4.2E-15 108.8 8.7 81 127-207 19-108 (118)
202 2adc_A Polypyrimidine tract-bi 99.1 1.3E-10 4.4E-15 120.1 9.5 77 126-207 149-227 (229)
203 2g4b_A Splicing factor U2AF 65 99.1 1.8E-10 6.3E-15 112.3 8.8 73 127-206 3-86 (172)
204 2yh0_A Splicing factor U2AF 65 99.1 2.4E-10 8.1E-15 114.1 8.8 74 127-207 3-87 (198)
205 3tht_A Alkylated DNA repair pr 99.0 8.1E-10 2.8E-14 121.2 9.0 77 125-207 15-98 (345)
206 2d9o_A DNAJ (HSP40) homolog, s 98.9 3.8E-09 1.3E-13 95.8 9.8 64 138-208 27-90 (100)
207 3s6e_A RNA-binding protein 39; 98.9 5.4E-09 1.9E-13 97.0 11.0 83 127-214 6-98 (114)
208 1owx_A Lupus LA protein, SS-B, 98.8 1.7E-08 5.8E-13 94.4 10.5 88 125-218 15-108 (121)
209 2dnr_A Synaptojanin-1; RRM dom 98.8 1.8E-08 6.1E-13 89.1 8.6 73 126-207 5-85 (91)
210 1ufw_A Synaptojanin 2; RNP dom 98.6 1E-07 3.5E-12 84.8 7.3 71 126-205 13-92 (95)
211 3dxb_A Thioredoxin N-terminall 98.4 4.9E-07 1.7E-11 92.7 7.7 68 140-207 141-212 (222)
212 2l9w_A U4/U6 snRNA-associated- 98.0 1.7E-05 5.9E-10 72.0 9.6 72 127-204 20-96 (117)
213 1wey_A Calcipressin 1; structu 97.1 0.0011 3.6E-08 60.0 7.2 76 127-208 4-84 (104)
214 1uw4_A UPF3X; nonsense mediate 95.3 0.057 1.9E-06 47.7 8.1 68 129-196 2-71 (91)
215 1whv_A Poly(A)-specific ribonu 94.8 0.11 3.7E-06 46.4 8.5 54 128-190 16-69 (100)
216 1wwh_A Nucleoporin 35, nucleop 94.4 0.11 3.9E-06 47.9 8.1 71 127-205 23-94 (119)
217 2dhx_A Poly (ADP-ribose) polym 94.4 0.11 3.9E-06 46.7 7.7 68 127-203 7-79 (104)
218 3ctr_A Poly(A)-specific ribonu 93.6 0.073 2.5E-06 47.6 4.9 53 131-191 8-60 (101)
219 3p3d_A Nucleoporin 53; structu 91.9 0.2 6.8E-06 47.0 5.6 88 128-219 7-108 (132)
220 2kn4_A Immunoglobulin G-bindin 91.6 0.13 4.3E-06 49.1 4.1 37 157-195 2-38 (158)
221 2i2y_A Fusion protein consists 90.9 0.11 3.8E-06 49.2 2.8 46 158-206 3-49 (150)
222 2l08_A Regulator of nonsense t 88.9 0.55 1.9E-05 41.8 5.4 69 128-196 9-79 (97)
223 3pq1_A Poly(A) RNA polymerase; 86.9 0.33 1.1E-05 55.0 3.6 64 128-198 53-116 (464)
224 3m91_B Prokaryotic ubiquitin-l 66.2 2.1 7.2E-05 32.1 1.2 24 782-805 15-38 (44)
225 3d45_A Poly(A)-specific ribonu 66.2 10 0.00035 43.4 7.7 55 128-191 440-494 (507)
226 2v75_A Nuclear polyadenylated 55.3 31 0.0011 30.3 6.8 61 746-806 6-72 (104)
227 3qks_C DNA double-strand break 41.3 12 0.00043 26.2 1.7 25 754-778 7-31 (34)
228 3m9d_G Prokaryotic ubiquitin-l 36.4 5.4 0.00019 32.6 -0.8 24 782-805 39-62 (68)
229 2g0c_A ATP-dependent RNA helic 26.4 1.2E+02 0.004 24.7 5.8 67 130-205 2-74 (76)
No 1
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=100.00 E-value=5.9e-38 Score=288.94 Aligned_cols=106 Identities=44% Similarity=0.889 Sum_probs=101.3
Q ss_pred HHHHhhhcCCCCccchhceeccccccchhhHhhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhh
Q 003361 716 DAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILD 795 (826)
Q Consensus 716 ~~~~l~~~ip~~k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld 795 (826)
++++||++||++|++||+|+|+|++||.++|.++|||||++||+||||++|++||+||+++|.+|.+|+.|+++|++|||
T Consensus 13 ~~k~li~~IP~~Ke~Lf~~~i~W~~vd~~~i~~~lkPWI~kKI~E~LG~eEd~LVdfI~~~L~~~~~pk~l~~~L~~~LD 92 (119)
T 3v53_A 13 HIKSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLD 92 (119)
T ss_dssp SSHHHHHHSCSSHHHHHHSCCCTTTSCHHHHHHTHHHHHHHHHHHHTC---CHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHhcccCChhhhhHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Q 003361 796 DEAEMFVLKMWRMLIFEIKKVETGLA 821 (826)
Q Consensus 796 e~a~~fv~klWr~li~e~~~~~~g~~ 821 (826)
++|+.||.+||||||||+++++.||+
T Consensus 93 eeA~~FV~kLWrlLIfe~ea~~~Gl~ 118 (119)
T 3v53_A 93 EEAEVFIVKMWRLLIYETEAKKIGLV 118 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999999996
No 2
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=99.86 E-value=2.2e-22 Score=183.98 Aligned_cols=92 Identities=21% Similarity=0.433 Sum_probs=84.0
Q ss_pred CCccchhceeccccccchhhHhhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhc-cCCHHHHHHHHHHhhh-HHHHHHHH
Q 003361 726 KTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD-HVKASQMLELLQTILD-DEAEMFVL 803 (826)
Q Consensus 726 ~~k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~-~~~p~~l~~~l~~~ld-e~a~~fv~ 803 (826)
+.++.+|+++|||..|+-. .|||||++||++|||++|++|||||+++|.. +.+|+.|+++|++||| ++|+.||.
T Consensus 5 ~kfp~~f~~kVD~~kV~l~----~ikpWI~kki~e~LG~EDdvlid~i~~~L~~~~~dpk~lqi~L~gFL~~e~a~~Fv~ 80 (111)
T 1mp1_A 5 LKFAECLEKKVDMSKVNLE----VIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMG 80 (111)
T ss_dssp CCCCSGGGGCCCTTTSCSG----GGHHHHHHHHHHHHSSCCSHHHHHHHHHTTSSSCCHHHHHHHHTTTSCSHHHHHHHH
T ss_pred ccCCHHHhccccHHHhhHH----HHHHHHHHHHHHHcCCccHHHHHHHHHHhhccCCCHHHHHHHHHHHhCcccHHHHHH
Confidence 3467899999999999865 4699999999999999999999999999987 6899999999999999 99999999
Q ss_pred HHHHHHHHHHHhhhhcccc
Q 003361 804 KMWRMLIFEIKKVETGLAL 822 (826)
Q Consensus 804 klWr~li~e~~~~~~g~~~ 822 (826)
+||+|||| ..+...||..
T Consensus 81 eLW~LLi~-aq~~~~GIP~ 98 (111)
T 1mp1_A 81 ELWPLLLS-AQENIAGIPS 98 (111)
T ss_dssp HHHHHHHH-HTTSSSSCCH
T ss_pred HHHHHHHH-hhcCCcCcCH
Confidence 99999996 4888888864
No 3
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=4.6e-19 Score=201.28 Aligned_cols=84 Identities=18% Similarity=0.393 Sum_probs=79.4
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.||+.+|..+|+.||.|..|.|+.++.+|+++|||||+|.+.++|..||..|||+.|+|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 8653
No 4
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=160.21 Aligned_cols=68 Identities=24% Similarity=0.390 Sum_probs=64.6
Q ss_pred HhhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 003361 746 LHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEI 813 (826)
Q Consensus 746 ~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~klWr~li~e~ 813 (826)
-.+.|||||++||++|||++|++||+||+++|..|.+|+.|+++|++|||++|+.||.+||+|||+-.
T Consensus 14 ~l~~lkpWI~kkv~e~LG~eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~a~~Fv~eLW~lL~~aq 81 (92)
T 1x4q_A 14 ELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEGR 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGGGTHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999654
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=9e-18 Score=152.19 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
..+++|||+|||+.+|+++|+.+|+.||.|.+|+++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 65
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=7e-17 Score=149.21 Aligned_cols=84 Identities=15% Similarity=0.253 Sum_probs=80.0
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|++||.|.+|.|+.++.||+++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hhHH
Q 003361 207 ATRE 210 (826)
Q Consensus 207 ~~kk 210 (826)
....
T Consensus 85 ~~~~ 88 (110)
T 3s8s_A 85 KGQQ 88 (110)
T ss_dssp TTHH
T ss_pred CCcH
Confidence 6543
No 7
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=157.38 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=77.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCC--ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G--~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..++|||||||+.+++++|+.+|+.|| .|.+|+|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8654
No 8
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=2.9e-16 Score=145.83 Aligned_cols=81 Identities=17% Similarity=0.273 Sum_probs=77.6
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34689999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred e
Q 003361 205 D 205 (826)
Q Consensus 205 a 205 (826)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 9
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-17 Score=147.50 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=75.9
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCC-ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEEe
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVD 205 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L-ng~~i~Gr~L~V~~a 205 (826)
+++|||+|||+.+|+++|+.+|+.|| .|.+|+|+.++.+|.++|||||+|.+.++|.+||..| |+..|+|+.|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999877 567899999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
.+.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 764
No 10
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.66 E-value=7.1e-17 Score=146.19 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=81.6
Q ss_pred CCCceEEEcCCCC------CCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC-e
Q 003361 126 KPQTKVYVGKIAP------TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-Q 198 (826)
Q Consensus 126 ~~~~tlfVgnLp~------~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G-r 198 (826)
...++|||+|||+ .+++++|+.+|+.||.|.+|.|+.++.||+++|||||+|.+.++|..||..|||..|+| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3478999999999 99999999999999999999999999889999999999999999999999999999999 9
Q ss_pred EEEEEEechhHHHH
Q 003361 199 ELMLKVDQATREYL 212 (826)
Q Consensus 199 ~L~V~~a~~~kk~l 212 (826)
.|.|.++....+|.
T Consensus 84 ~l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 84 RLFLYTMKDVERYN 97 (100)
T ss_dssp BCEEEESHHHHHHH
T ss_pred EEEEEECchhhhhh
Confidence 99999998775553
No 11
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=9.6e-16 Score=136.22 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 57899999999999999999999999999999999998889999999999999999999999999999999999999873
No 12
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=142.23 Aligned_cols=82 Identities=20% Similarity=0.373 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCc--eeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCc----eeCCeE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGT--VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQE 199 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~--I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~----~i~Gr~ 199 (826)
..-.||||+|||+.+|+++|+.+|++||. |.+|++++|+.+|.++|||||+|.+.++|..||..|||. .|+|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34689999999999999999999999995 679999999999999999999999999999999999996 599999
Q ss_pred EEEEEech
Q 003361 200 LMLKVDQA 207 (826)
Q Consensus 200 L~V~~a~~ 207 (826)
|.|.|+.+
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 13
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=5e-16 Score=135.91 Aligned_cols=81 Identities=16% Similarity=0.328 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||..+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 5
No 14
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=5e-16 Score=135.31 Aligned_cols=81 Identities=21% Similarity=0.362 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 36899999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred c
Q 003361 206 Q 206 (826)
Q Consensus 206 ~ 206 (826)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=4.9e-16 Score=139.87 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=76.9
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeE--------EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 198 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~--------~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr 198 (826)
+.++|||+|||+.+++++|+.+|+.||.|.. +.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 5799999999999999999999999999999 99999988999999999999999999999999999999999
Q ss_pred EEEEEEec
Q 003361 199 ELMLKVDQ 206 (826)
Q Consensus 199 ~L~V~~a~ 206 (826)
.|.|.++.
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99999873
No 16
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.64 E-value=4.7e-16 Score=134.85 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=77.4
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEech
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 207 (826)
.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999865
Q ss_pred h
Q 003361 208 T 208 (826)
Q Consensus 208 ~ 208 (826)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 17
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.2e-16 Score=143.32 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 35789999999999999999999999999999999999888999999999999999999999 89999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 654
No 18
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=7.1e-16 Score=137.99 Aligned_cols=84 Identities=26% Similarity=0.405 Sum_probs=79.6
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred hhHH
Q 003361 207 ATRE 210 (826)
Q Consensus 207 ~~kk 210 (826)
....
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 6543
No 19
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=1.1e-15 Score=141.45 Aligned_cols=83 Identities=17% Similarity=0.278 Sum_probs=78.7
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 20
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=135.97 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 35889999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.3e-16 Score=139.26 Aligned_cols=83 Identities=20% Similarity=0.398 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
No 22
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=137.51 Aligned_cols=82 Identities=23% Similarity=0.383 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 357899999999999999999999999999999999998899999999999999999999999 9999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 23
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.9e-16 Score=136.68 Aligned_cols=81 Identities=23% Similarity=0.436 Sum_probs=78.0
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
++++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999985
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 84 ~ 84 (95)
T 2dnz_A 84 E 84 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 24
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-15 Score=143.40 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
....++|||+|||+.+++++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34689999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 119 a~~ 121 (139)
T 1u6f_A 119 AAS 121 (139)
T ss_dssp SSC
T ss_pred CCC
Confidence 865
No 25
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=1.2e-15 Score=139.91 Aligned_cols=82 Identities=22% Similarity=0.237 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 35799999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 26
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=136.53 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35899999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 27
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=138.21 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35899999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 28
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.3e-16 Score=139.23 Aligned_cols=82 Identities=21% Similarity=0.337 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 35789999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 91 ~~ 92 (103)
T 2dnm_A 91 RY 92 (103)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 29
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=8.2e-16 Score=141.30 Aligned_cols=84 Identities=23% Similarity=0.426 Sum_probs=79.2
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34579999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8653
No 30
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.1e-16 Score=139.56 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 65
No 31
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.62 E-value=2.5e-16 Score=139.54 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=72.6
Q ss_pred ceEEEcCCCCCCChHHHHHHhhcCC--ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~~G--~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
.+|||||||+.+++++|+.+|+.|| .|.++.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999998899999999999999999999999999999999999999886
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 32
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.62 E-value=3.1e-16 Score=141.74 Aligned_cols=81 Identities=20% Similarity=0.421 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccC-CCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~-~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
...++|||+|||+.+++++|+.+|+.|| |.+|.|+.++ .+|+++|||||+|.+.++|..|| .|||..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3589999999999999999999999999 9999999987 58999999999999999999999 8999999999999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8653
No 33
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=137.23 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 45899999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 93 ~~~ 95 (103)
T 2cq0_A 93 KPS 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.62 E-value=9.5e-16 Score=142.30 Aligned_cols=79 Identities=18% Similarity=0.372 Sum_probs=73.9
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEech
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 207 (826)
.++|||||||+.+++++|+.+|+.||.|.+|+|+.+. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5789999999999999999999999999999999984 55899999999999999999999999999999999998765
Q ss_pred h
Q 003361 208 T 208 (826)
Q Consensus 208 ~ 208 (826)
.
T Consensus 83 ~ 83 (115)
T 4f25_A 83 R 83 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.5e-16 Score=136.76 Aligned_cols=82 Identities=17% Similarity=0.370 Sum_probs=78.3
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEE-EEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~-ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
+.++|||+|||+.+++++|+.+|+.||.|..+ .|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 57899999999999999999999999999999 99999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 84 ~~~ 86 (96)
T 1x5t_A 84 FKK 86 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 553
No 36
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.61 E-value=2.3e-15 Score=139.10 Aligned_cols=83 Identities=16% Similarity=0.315 Sum_probs=78.9
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34689999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 92 a~~ 94 (115)
T 2dgo_A 92 ATR 94 (115)
T ss_dssp SSC
T ss_pred ccC
Confidence 855
No 37
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=138.26 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=78.8
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC------CceeCCeE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN------KFNIDGQE 199 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln------g~~i~Gr~ 199 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|| |..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 357899999999999999999999999999999999998899999999999999999999999999 99999999
Q ss_pred EEEEEechh
Q 003361 200 LMLKVDQAT 208 (826)
Q Consensus 200 L~V~~a~~~ 208 (826)
|.|.|+...
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999998653
No 38
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=2.1e-15 Score=137.39 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=76.9
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 358999999999999999999999999999999999997 9999999999999999999999999999999999999987
Q ss_pred c
Q 003361 206 Q 206 (826)
Q Consensus 206 ~ 206 (826)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 39
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=136.85 Aligned_cols=83 Identities=18% Similarity=0.362 Sum_probs=78.8
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 653
No 40
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.61 E-value=1.5e-15 Score=138.02 Aligned_cols=83 Identities=17% Similarity=0.270 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee---CCeEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQELML 202 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i---~Gr~L~V 202 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..+ +|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4589999999999999999999999999999999999988999999999999999999999999999998 8999999
Q ss_pred EEechh
Q 003361 203 KVDQAT 208 (826)
Q Consensus 203 ~~a~~~ 208 (826)
.++...
T Consensus 91 ~~a~~~ 96 (106)
T 2dgp_A 91 KPADSE 96 (106)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 998653
No 41
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=137.06 Aligned_cols=84 Identities=20% Similarity=0.411 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEecc-CCCCCCcceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-PSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELML 202 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d-~~tGk~kGfgFVeF~~~e~A~~Al~~L-ng~~i~Gr~L~V 202 (826)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +.+|.++|||||+|.+.++|..||..| ||..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 346899999999999999999999999999999999998 679999999999999999999999999 999999999999
Q ss_pred EEechh
Q 003361 203 KVDQAT 208 (826)
Q Consensus 203 ~~a~~~ 208 (826)
.|+...
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 998653
No 42
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.9e-15 Score=134.90 Aligned_cols=82 Identities=17% Similarity=0.353 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 357899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 43
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=135.05 Aligned_cols=80 Identities=23% Similarity=0.435 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 357999999999999999999999999999999999996 5999999999999999999999999999999999999987
Q ss_pred c
Q 003361 206 Q 206 (826)
Q Consensus 206 ~ 206 (826)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 44
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.60 E-value=2.7e-15 Score=131.54 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+. ++|..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3468899999999999999999999999999999999998899999999999999999999997 588999999999987
Q ss_pred e
Q 003361 205 D 205 (826)
Q Consensus 205 a 205 (826)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 45
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=9.8e-16 Score=139.80 Aligned_cols=84 Identities=14% Similarity=0.293 Sum_probs=76.4
Q ss_pred CCCceEEEcCCCCCC------ChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-
Q 003361 126 KPQTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ- 198 (826)
Q Consensus 126 ~~~~tlfVgnLp~~v------te~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr- 198 (826)
...++|||||||+.+ ++++|+.+|+.||.|.+|.|+. .+|.++|||||+|.+.++|..||..|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 357899999999999 6799999999999999999983 5899999999999999999999999999999998
Q ss_pred EEEEEEechhHHH
Q 003361 199 ELMLKVDQATREY 211 (826)
Q Consensus 199 ~L~V~~a~~~kk~ 211 (826)
.|.|.++....+|
T Consensus 91 ~l~V~~a~~~~k~ 103 (105)
T 2nlw_A 91 TFRVNLFTDFDKY 103 (105)
T ss_dssp EEEEECSCCCCCC
T ss_pred eEEEEEcchHhhh
Confidence 9999998765443
No 46
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.60 E-value=3.1e-15 Score=135.78 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC---eEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG---QELML 202 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G---r~L~V 202 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 458999999999999999999999999999999999996 89999999999999999999999999999998 99999
Q ss_pred EEechh
Q 003361 203 KVDQAT 208 (826)
Q Consensus 203 ~~a~~~ 208 (826)
.|+...
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 998653
No 47
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=135.95 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCcee-EEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE----E
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE----L 200 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~-~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~----L 200 (826)
.+.++|||+|||+.+++++|+.+|+.||.|. .|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3589999999999999999999999999999 9999999889999999999999999999999999999999999 9
Q ss_pred EEEEech
Q 003361 201 MLKVDQA 207 (826)
Q Consensus 201 ~V~~a~~ 207 (826)
.|.|+..
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9998754
No 48
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=138.31 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCcee--------EEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~--------~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 196 (826)
..+.++|||+|||+.+++++|+.+|+.||.|. .|.|+.++.+|.++|||||+|.+.++|..||..|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34689999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeEEEEEEech
Q 003361 197 GQELMLKVDQA 207 (826)
Q Consensus 197 Gr~L~V~~a~~ 207 (826)
|+.|.|.++..
T Consensus 92 g~~l~V~~a~~ 102 (113)
T 2cpe_A 92 GSKLKVSLARK 102 (113)
T ss_dssp TEECEEECSSC
T ss_pred CCEEEEEECCC
Confidence 99999998855
No 49
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=2.2e-15 Score=141.44 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=78.7
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 643
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.9e-15 Score=133.16 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3468999999999999999999999999999999999984 34789999999999999999999999999999999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8653
No 51
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=135.84 Aligned_cols=83 Identities=19% Similarity=0.402 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCC---CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~---tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 202 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++. +|.++|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999998865 5689999999999999999999999999999999999
Q ss_pred EEechh
Q 003361 203 KVDQAT 208 (826)
Q Consensus 203 ~~a~~~ 208 (826)
.++...
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 988553
No 52
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-15 Score=138.99 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
...++|||||||+.+|+++|+.+|+.||.|.+|.|+.++. |.++|||||+|.+.++|..||. +||..|+|+.|.|.|+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3578999999999999999999999999999999999975 9999999999999999999999 8999999999999976
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 53
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=1.5e-14 Score=135.63 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 457999999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 654
No 54
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=3.4e-15 Score=135.27 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.|| |..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3579999999999999999999999997 999999999889999999999999999999999 89999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 55
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=131.71 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=76.2
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCC-CcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT-PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk-~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+++|||+|||+.+++++|+.+|+.||.|..+.++.+..++. ++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999876665 8999999999999999999999999999999999998
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 56
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.9e-15 Score=135.12 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=75.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCC-CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~t-Gk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
+.++|||+|||+.+++++|+.+|+.|| |..|.|+.++.+ |.++|||||+|.+.++|..|| .|||..|+|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 579999999999999999999999999 999999999877 999999999999999999999 89999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 92 ~~~ 94 (104)
T 1wi8_A 92 DQA 94 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 57
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=145.09 Aligned_cols=82 Identities=16% Similarity=0.359 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeE--EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCc----eeCCeE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQE 199 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~--~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~----~i~Gr~ 199 (826)
.+.++|||+|||+.+++++|+.+|+.||.|.. |+|+.++.+|.++|||||+|.+. +|..||..|||. .|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999977 99999988999999999999999 999999999999 999999
Q ss_pred EEEEEechh
Q 003361 200 LMLKVDQAT 208 (826)
Q Consensus 200 L~V~~a~~~ 208 (826)
|.|.++...
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999998653
No 58
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.59 E-value=3.4e-15 Score=137.29 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||..+ |..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 446899999999999999999999999999999999999889999999999999999999999975 5999999999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8653
No 59
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.59 E-value=3.4e-15 Score=131.15 Aligned_cols=79 Identities=24% Similarity=0.417 Sum_probs=75.9
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEech
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 207 (826)
.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+ .|||..|+|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 8999999999999998754
No 60
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.1e-15 Score=137.51 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
....++|||+|||..+++++|+.+|+.||.|..|.++.++ +.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3468899999999999999999999999999999999884 45899999999999999999999999999999999999
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 104 a~~ 106 (109)
T 2err_A 104 ATA 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 61
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=2.2e-15 Score=142.99 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=78.8
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 653
No 62
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.5e-16 Score=134.47 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999988765
No 63
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=7.4e-15 Score=139.80 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999875
No 64
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=138.54 Aligned_cols=81 Identities=15% Similarity=0.322 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.+. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 357899999999999999999999999999999999996 9999999999999999999999999999999999999998
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 84 ~~ 85 (116)
T 2fy1_A 84 KK 85 (116)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 65
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3e-15 Score=134.20 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
...++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35789999999999999999999999999998888888889999999999999999999999999999999999999987
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 66
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.3e-15 Score=135.60 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=77.6
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..||+ .|+|+.|.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44689999999999999999999999999999999999988999999999999999999999999998 89999999999
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 93 a~~ 95 (116)
T 2cqd_A 93 AYL 95 (116)
T ss_dssp STT
T ss_pred ccc
Confidence 854
No 67
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4e-15 Score=137.75 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||.. ||..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3478999999999999999999999999999999999988999999999999999999999997 999999999999988
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 104 ~~~ 106 (116)
T 1x4b_A 104 VAR 106 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 68
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.6e-15 Score=131.61 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCChHHHH----HHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~----~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 202 (826)
..++|||+|||+.+++++|+ .+|+.||.|.+|.|+.++.+ +|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 57899999999999999999 99999999999999998644 899999999999999999999999999999999
Q ss_pred EEech
Q 003361 203 KVDQA 207 (826)
Q Consensus 203 ~~a~~ 207 (826)
.++..
T Consensus 85 ~~a~~ 89 (96)
T 2dgx_A 85 SLATG 89 (96)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99864
No 69
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.3e-15 Score=133.92 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=76.9
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.+ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 46889999999999999999999999999999999987 8999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 91 ~~~ 93 (103)
T 2d9p_A 91 QRK 93 (103)
T ss_dssp SSC
T ss_pred ccc
Confidence 653
No 70
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-14 Score=131.08 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457999999999999999999999999999999999884 34899999999999999999999999999999999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 90 a~~~ 93 (103)
T 2cq3_A 90 ATAR 93 (103)
T ss_dssp CCSS
T ss_pred cccC
Confidence 8653
No 71
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.57 E-value=4.1e-15 Score=131.57 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999874 8999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 72
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.1e-15 Score=135.00 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 357899999999999999999999999999999999996 7999999999999999999999999999999999999987
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 73
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.57 E-value=1.9e-15 Score=128.75 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 130 tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
+|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+. |||..|+|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 8999999999999875
No 74
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.4e-15 Score=136.20 Aligned_cols=82 Identities=29% Similarity=0.532 Sum_probs=78.6
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 87 ~~ 88 (104)
T 1p1t_A 87 SE 88 (104)
T ss_dssp CT
T ss_pred Cc
Confidence 65
No 75
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.57 E-value=2.3e-15 Score=134.01 Aligned_cols=80 Identities=21% Similarity=0.217 Sum_probs=75.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999999998888899999999999999999999999999999999999999875
No 76
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=5.2e-15 Score=140.30 Aligned_cols=84 Identities=12% Similarity=0.262 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCChHHHH----HHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~----~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 201 (826)
.+.++|||||||+.+++++|+ .+|+.||.|.+|.+.. +|+++|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 357899999999999998865 7999999999988743 789999999999999999999999999999999999
Q ss_pred EEEechhHHHH
Q 003361 202 LKVDQATREYL 212 (826)
Q Consensus 202 V~~a~~~kk~l 212 (826)
|.|+......+
T Consensus 104 V~~a~~~~~~~ 114 (127)
T 2a3j_A 104 ITFSETPQSQV 114 (127)
T ss_dssp EEECCCCCHHH
T ss_pred EEEccCcchhc
Confidence 99997764443
No 77
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=6.4e-15 Score=145.27 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++.+|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 150 ~~~ 152 (165)
T 1rk8_A 150 FVK 152 (165)
T ss_dssp EEC
T ss_pred cCC
Confidence 654
No 78
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-15 Score=135.59 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhc-CCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-IDGQELMLK 203 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~-~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~-i~Gr~L~V~ 203 (826)
.+.++|||+|||+.+++++|+.+|+. ||.|.+|.|+.++ +|.++|||||+|.+.++|..||..|||.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 35789999999999999999999999 9999999999997 99999999999999999999999999999 999999999
Q ss_pred Eech
Q 003361 204 VDQA 207 (826)
Q Consensus 204 ~a~~ 207 (826)
++..
T Consensus 86 ~a~~ 89 (104)
T 2dhg_A 86 VAIP 89 (104)
T ss_dssp BCCC
T ss_pred EccC
Confidence 8754
No 79
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=131.05 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||. ++..|+|+.|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3457899999999999999999999999999999999998899999999999999999999998 58899999999998
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 8653
No 80
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=128.46 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
...++|||+|||+.+++++|+.+|+.| .|..+.|+.+ .+|.++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 357899999999999999999999999 9999999999 799999999999999999999999 9999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 653
No 81
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.3e-15 Score=135.62 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCce-eEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I-~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
.+.++|||+|||+.+++++|+.+|+.||.| ..|.|+.++ +|.++|||||+|.+.++|..||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 357899999999999999999999999999 899999997 999999999999999999999997 99999999999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8653
No 82
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.56 E-value=1.1e-14 Score=128.56 Aligned_cols=74 Identities=12% Similarity=0.235 Sum_probs=70.0
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
....||||||++.+++++|+.+|.+||+|.+++++. ++|||||+|.+.++|..|+..|||..|+|+.|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999966 57999999999999999999999999999999999983
No 83
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.2e-15 Score=133.93 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=78.0
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34689999999999999999999999999999999999988999999999999999999999998 99999999999998
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 7543
No 84
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.56 E-value=8.2e-15 Score=137.15 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=76.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4789999999999999999999999999999999999889999999999999999999999 799999999999999875
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 85
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.5e-15 Score=128.36 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=73.4
Q ss_pred ceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|| ..|+|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999998899999999999999999999999999 9999999999986
No 86
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.56 E-value=1.1e-14 Score=142.03 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=78.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 149 ~~ 150 (158)
T 2kn4_A 149 YG 150 (158)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 87
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.56 E-value=1.2e-14 Score=141.62 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=78.7
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 88
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.55 E-value=1.6e-15 Score=133.76 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=74.2
Q ss_pred ceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEechh
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~~ 208 (826)
++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.+ |..|+..|||..|+|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999888999999999999999 99999999999999999999998664
No 89
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.7e-15 Score=137.79 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
...++|||+|||+.+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 357899999999999999999999999999986666666799999999999999999999999 9999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 654
No 90
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.1e-14 Score=130.31 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|.. ++.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3578999999999999999999999999999999955 4668999999999999999999999999999999999998
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 97 ~~ 98 (109)
T 1x4a_A 97 RS 98 (109)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 91
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.55 E-value=1.1e-14 Score=135.88 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCc---eeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~---I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 202 (826)
...++|||+|||+.+++++|+.+|+.||. |..|.|+.++ .|+++|||||+|.+.++|..||. |||..|+|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR-EGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS-SSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC-CCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 35789999999999999999999999999 8999999996 49999999999999999999999 8999999999999
Q ss_pred EEech
Q 003361 203 KVDQA 207 (826)
Q Consensus 203 ~~a~~ 207 (826)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98854
No 92
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.1e-15 Score=133.91 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=76.6
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCc-eeEEEEe-ccCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRA-QYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELML 202 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~-I~~~ki~-~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln--g~~i~Gr~L~V 202 (826)
+.++|||+|||+.+++++|+.+|+.||. |..+.++ .+..+|.++|||||+|.+.++|..|+..|| ++.|+|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5789999999999999999999999998 9999998 787889999999999999999999999996 59999999999
Q ss_pred EEechh
Q 003361 203 KVDQAT 208 (826)
Q Consensus 203 ~~a~~~ 208 (826)
.|+...
T Consensus 87 ~~a~~~ 92 (109)
T 2dis_A 87 DWAEPE 92 (109)
T ss_dssp EESCSS
T ss_pred EEcCCC
Confidence 998653
No 93
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.9e-14 Score=131.36 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee--------C
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--------D 196 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i--------~ 196 (826)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3457899999999999999999999999999999999997 999999999999999999999999999999 5
Q ss_pred CeEEEEEEech
Q 003361 197 GQELMLKVDQA 207 (826)
Q Consensus 197 Gr~L~V~~a~~ 207 (826)
|++|.|.|+..
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999864
No 94
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-15 Score=136.12 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|.. .++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999988 667777789999999999999999999999 9999999999999988
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 95
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=134.07 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=75.3
Q ss_pred CCceEEEcCCCCCCChHHHH---HHhhcCCceeEEEEeccCCCC---CCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003361 127 PQTKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPSNG---TPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~---~lF~~~G~I~~~ki~~d~~tG---k~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L 200 (826)
..++|||+|||+.+++++|+ .+|+.||.|..|.|+.+..+| .++|||||+|.+.++|..||..|||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 47899999999999999999 999999999999999886544 566999999999999999999999999999999
Q ss_pred EEEEechh
Q 003361 201 MLKVDQAT 208 (826)
Q Consensus 201 ~V~~a~~~ 208 (826)
.|.|+...
T Consensus 94 ~V~~a~~k 101 (111)
T 2cpi_A 94 KASLGTTK 101 (111)
T ss_dssp EEESCCCC
T ss_pred EEEecccc
Confidence 99998653
No 96
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.54 E-value=8.4e-15 Score=130.85 Aligned_cols=83 Identities=13% Similarity=0.304 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCChHHHH----HHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~----~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 201 (826)
.+.++|||+|||+.+++++|+ .+|+.||.|..|.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 358899999999999999999 9999999999999874 578889999999999999999999999999999999
Q ss_pred EEEechhHHH
Q 003361 202 LKVDQATREY 211 (826)
Q Consensus 202 V~~a~~~kk~ 211 (826)
|.|+......
T Consensus 83 v~~a~~~~~~ 92 (97)
T 1nu4_A 83 IQYAKTDSDI 92 (97)
T ss_dssp EEECSSCCTH
T ss_pred EEEccCCCcc
Confidence 9998765433
No 97
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.54 E-value=1.4e-13 Score=146.24 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=71.7
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 203 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~-Gr~L~V~ 203 (826)
..+.++|||+|||+.+++++|+.+|+.||.|.+|.++.+. +|||||+|.+.++|..|+..|||..|+ |+.|.|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 4468899999999999999999999999999999998653 589999999999999999999999999 9999999
Q ss_pred Eec
Q 003361 204 VDQ 206 (826)
Q Consensus 204 ~a~ 206 (826)
|+.
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 974
No 98
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.53 E-value=2.2e-14 Score=132.49 Aligned_cols=80 Identities=14% Similarity=0.269 Sum_probs=74.6
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|+.||.|.+|.++.+ +.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 5789999999999999999999999999999999865 5668999999999999999999999999999999999997
Q ss_pred hhH
Q 003361 207 ATR 209 (826)
Q Consensus 207 ~~k 209 (826)
...
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 653
No 99
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.53 E-value=4.7e-15 Score=128.53 Aligned_cols=73 Identities=15% Similarity=0.334 Sum_probs=68.2
Q ss_pred CceEEEcCCCCCC------ChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 003361 128 QTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 200 (826)
Q Consensus 128 ~~tlfVgnLp~~v------te~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr-~L 200 (826)
.++|||+|||+.+ ++++|+.+|+.||.|.++.++. .+|.++|||||+|.+.++|..|+..|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 6799999999999999999873 5899999999999999999999999999999999 88
Q ss_pred EE
Q 003361 201 ML 202 (826)
Q Consensus 201 ~V 202 (826)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 77
No 100
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.3e-14 Score=134.85 Aligned_cols=90 Identities=12% Similarity=0.220 Sum_probs=77.6
Q ss_pred CceEEEcCC----CCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCC----HHH----HHHHHH--HhCCc
Q 003361 128 QTKVYVGKI----APTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES----AEG----VLRALR--LLNKF 193 (826)
Q Consensus 128 ~~tlfVgnL----p~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~----~e~----A~~Al~--~Lng~ 193 (826)
++.|||||| |+.+++..|+.+|+.||.|.+|.++.|+.||.++|||||+|.+ +.+ |..|+. .|||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 378999999 9999999999999999999999999999999999999999996 433 788888 78999
Q ss_pred eeCCeEEEEEEechh--HHHHHHHHH
Q 003361 194 NIDGQELMLKVDQAT--REYLERYVD 217 (826)
Q Consensus 194 ~i~Gr~L~V~~a~~~--kk~le~~k~ 217 (826)
.|+|+.|+|.++... .+.++....
T Consensus 82 ~I~Gr~irV~ln~~g~~~~~~~~~i~ 107 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSILNNIISKFVE 107 (136)
T ss_dssp EETTEEEEEEECCTTHHHHHHHHHHH
T ss_pred eecCcEEEEEECcccHHHHHHHHHHH
Confidence 999999999998654 344544443
No 101
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-14 Score=132.94 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=69.7
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln--g~~i~Gr~L~V~~ 204 (826)
+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..||..|+ |..|+|+.|.|.|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 5789999999999999999999999999999999875 5999999999999999999886 4799999999998
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 89 A~~ 91 (105)
T 1sjq_A 89 SNH 91 (105)
T ss_dssp CSS
T ss_pred cCC
Confidence 854
No 102
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.53 E-value=6.4e-15 Score=140.85 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 103
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.52 E-value=8.4e-15 Score=152.47 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=77.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCC--ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G--~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..++|||+||++.+++++|+.+|+.|| .|.+|+|+.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999989999999999999999999999999999999999999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 104
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.4e-14 Score=128.03 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHh--CCceeCCeEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELML 202 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L--ng~~i~Gr~L~V 202 (826)
..+.++|||+|||+.+++++|+.+|+.||.|..|.++.+ +|||||+|.+.++|..|+..| ++..|+|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346789999999999999999999999999999998765 599999999999999999977 578899999999
Q ss_pred EEech
Q 003361 203 KVDQA 207 (826)
Q Consensus 203 ~~a~~ 207 (826)
.|+..
T Consensus 86 ~~a~~ 90 (101)
T 2cq1_A 86 QYSNH 90 (101)
T ss_dssp EECSC
T ss_pred EEcCc
Confidence 99864
No 105
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=3.9e-14 Score=127.44 Aligned_cols=74 Identities=16% Similarity=0.390 Sum_probs=69.5
Q ss_pred CCCceEEEcCCCC-CCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 126 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 126 ~~~~tlfVgnLp~-~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
.+.++|||||||+ .+++++|+.+|+.||.|..+.+. +|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3589999999999 99999999999999999999983 58999999999999999999999999999999999
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 92 a~~ 94 (97)
T 2xnq_A 92 SSS 94 (97)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 106
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.4e-14 Score=127.32 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.+++++|+.+|+.||.| .++.+ .+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3468999999999999999999999999987 56666 6899999999999999999999999999999999999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8653
No 107
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=129.34 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELMLK 203 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~--i~Gr~L~V~ 203 (826)
++.++|||+|||+.+++++|+.+|++||.|.++.++.+ +|||||+|.+.++|..|+..|||.. |+|+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 46889999999999999999999999999999999764 5999999999999999999999875 889999999
Q ss_pred Eechh
Q 003361 204 VDQAT 208 (826)
Q Consensus 204 ~a~~~ 208 (826)
|+...
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 98653
No 108
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=131.48 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCC-CCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEE
Q 003361 126 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELML 202 (826)
Q Consensus 126 ~~~~tlfVgnLp~-~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng--~~i~Gr~L~V 202 (826)
.+.++|||+|||+ .+++++|+.+|+.||.|.+|.|+.++ |||||+|.+.++|..||..||| ..|+|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3688999999999 99999999999999999999998763 8999999999999999999886 4599999999
Q ss_pred EEechh
Q 003361 203 KVDQAT 208 (826)
Q Consensus 203 ~~a~~~ 208 (826)
.|+...
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998753
No 109
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=6.6e-15 Score=125.21 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=71.8
Q ss_pred eEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 130 tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
+|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+.. +|..|+|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999988999999999999999999999995 999999999999875
No 110
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.1e-14 Score=129.63 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeE-EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~-~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
...++|||+|||+.+++++|+.+|..||.|.. |.|+.+ .+|+++|||||+|.+.++|..||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 35789999999999999999999999999987 888888 7999999999999999999999997 99999999999987
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 91 ~~~ 93 (104)
T 1wg5_A 91 SSR 93 (104)
T ss_dssp ECT
T ss_pred CCH
Confidence 643
No 111
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=133.52 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCc---eeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~---I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 201 (826)
....++|||+|||+.+++++|+.+|+.||. |..|.|+.++. |+++|||||+|.+.++|..||. |||..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346889999999999999999999999998 89999999975 9999999999999999999999 999999999999
Q ss_pred EEEech
Q 003361 202 LKVDQA 207 (826)
Q Consensus 202 V~~a~~ 207 (826)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998765
No 112
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.4e-14 Score=133.68 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..+.+..+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35789999999999999999999999999943322222237899999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 113
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.51 E-value=4.1e-14 Score=144.86 Aligned_cols=82 Identities=20% Similarity=0.349 Sum_probs=78.0
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.+||||||||+.+++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.+.++|..||..|||..+.|+.|.|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 114
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.6e-14 Score=128.67 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=70.6
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC-----eEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-----QELM 201 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G-----r~L~ 201 (826)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.+ |||||+|.+.++|..||..|||..|+| +.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 4789999999999999999999999999999999876 899999999999999999999999999 9999
Q ss_pred EEEech
Q 003361 202 LKVDQA 207 (826)
Q Consensus 202 V~~a~~ 207 (826)
|.++..
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 999865
No 115
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-14 Score=131.08 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=72.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+|||+.+++++|+.+|+.|| ++.|.|+.++ +|+++|||||+|.+.++|..||. +|+..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 578999999999999999999999999 5599999997 99999999999999999999995 79999999999998765
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 91 ~ 91 (102)
T 1wez_A 91 T 91 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 116
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.9e-14 Score=127.13 Aligned_cols=80 Identities=20% Similarity=0.355 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.|+ .+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3589999999999999999999999874 6777888789999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 90 ~~~ 92 (102)
T 2fc8_A 90 KPK 92 (102)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 117
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.51 E-value=3.6e-14 Score=130.39 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.+++++|+.+|+.||.|..+.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3468999999999999999999999999999999997 58999999999999999999999999999999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 8654
No 118
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.51 E-value=1e-13 Score=138.77 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=78.3
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457999999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 654
No 119
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.7e-14 Score=122.34 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKV 204 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L-ng~~i~Gr~L~V~~ 204 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..| ||..|+|+.|.|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45789999999999999999999999999999999875 599999999999999999988 99999999999998
Q ss_pred e
Q 003361 205 D 205 (826)
Q Consensus 205 a 205 (826)
+
T Consensus 84 a 84 (85)
T 2ytc_A 84 G 84 (85)
T ss_dssp C
T ss_pred c
Confidence 7
No 120
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.50 E-value=2.6e-14 Score=137.11 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=74.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCc---eeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~---I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
..++|||+|||+.+|+++|+.+|+.||. |..|.|+.++. |+++|||||+|.+.++|..||. |||..|+|+.|.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 5789999999999999999999999999 89999999975 9999999999999999999999 99999999999999
Q ss_pred Eech
Q 003361 204 VDQA 207 (826)
Q Consensus 204 ~a~~ 207 (826)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 8754
No 121
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.1e-14 Score=129.40 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=72.9
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+|||+.+++++|+.+|+.| .|..|.|+.++ +|+++|||||+|.+.++|..|| .|||..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999 89999999996 5999999999999999999999 589999999999998775
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 122
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.2e-14 Score=127.46 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+|||+.+++++|+.+|+.||.|.++.++. ++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 478999999999999999999999999999999973 46999999999999999999999999999999999875
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 123
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=6.1e-14 Score=129.88 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCC-ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
..++|||+|||+.+++++|+.+|+.|| .|..+.++. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 478999999999999999999999999 899998854 357899999999999999999999999999999999988
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 643
No 124
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=7.6e-14 Score=123.24 Aligned_cols=75 Identities=19% Similarity=0.395 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 358999999999999999999999999999999997 489999999999999999999999999999999988
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 78 ~~~ 80 (90)
T 2dnq_A 78 KNK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 553
No 125
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.7e-14 Score=127.77 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
...++|||+|||+.+++++|+.+|+.||.|..|.++.+ +|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35789999999999999999999999999999999876 599999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 126
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.48 E-value=2e-14 Score=129.91 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=75.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+|||+.+++++|+.+|+.||.|.+|.++.++ +|.++|||||+|.+.++|..|+. ||..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 57899999999999999999999999999999999997 99999999999999999999999 9999999999999987
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 65
No 127
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.48 E-value=1.4e-14 Score=139.12 Aligned_cols=83 Identities=16% Similarity=0.259 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEE--Eec---cCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK--RAQ---YPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~k--i~~---d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L 200 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..+. ++. ...+|.++|||||+|.+.++|..||..|||..|+|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3578999999999999999999999999998751 111 12479999999999999999999999999999999999
Q ss_pred EEEEechh
Q 003361 201 MLKVDQAT 208 (826)
Q Consensus 201 ~V~~a~~~ 208 (826)
.|.|+...
T Consensus 123 ~V~~a~~~ 130 (143)
T 3egn_A 123 VVQFARSA 130 (143)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999654
No 128
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=3.4e-14 Score=126.72 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.+++++|+.+|+.||.|..+ . .+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----S-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----E-ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----C-CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3468999999999999999999999999988766 2 4789999999999999999999999999999999999999
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 854
No 129
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=9.4e-14 Score=124.48 Aligned_cols=77 Identities=17% Similarity=0.287 Sum_probs=70.4
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+|||+.+++++|+.+|+.||.|. +.++. +.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 478999999999999999999999999997 66654 4678999999999999999999999999999999999986
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 130
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.7e-14 Score=131.59 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln--g~~i~Gr~L~V~~ 204 (826)
+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..|+..|+ +..|+|+.|.|.|
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 5789999999999999999999999999999999876 5999999999999999999887 4689999999999
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 104 a~~ 106 (119)
T 2ad9_A 104 SNH 106 (119)
T ss_dssp CSS
T ss_pred ccC
Confidence 854
No 131
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.8e-13 Score=121.35 Aligned_cols=76 Identities=24% Similarity=0.419 Sum_probs=70.4
Q ss_pred CCCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..+.++|||+|||+.+++++|+.+|+.||.|..|.++. +||||+|.+.++|..|+..|||..|+|+.|.|.|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34689999999999999999999999999999999974 4999999999999999999999999999999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 79 a~~~ 82 (92)
T 2dgt_A 79 STSR 82 (92)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 8653
No 132
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.8e-13 Score=132.45 Aligned_cols=80 Identities=18% Similarity=0.324 Sum_probs=77.3
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999975
No 133
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.8e-13 Score=122.57 Aligned_cols=76 Identities=16% Similarity=0.387 Sum_probs=70.9
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~--Gr~L~V~~ 204 (826)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..|||..|+ |+.|.|.|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 5789999999999999999999999999999998764 589999999999999999999999999 99999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 134
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=8.8e-14 Score=128.97 Aligned_cols=78 Identities=13% Similarity=0.217 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCCC-CChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 003361 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 201 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~-vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln--g~~i~Gr~L~ 201 (826)
..+.++|||+|||+. +++++|+.+|+.||.|.+|.|+.. +|||||+|.+.++|..||..|| +..|+|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 346889999999997 999999999999999999999753 5999999999999999999885 4669999999
Q ss_pred EEEechh
Q 003361 202 LKVDQAT 208 (826)
Q Consensus 202 V~~a~~~ 208 (826)
|.|+...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9998654
No 135
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=124.50 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.+ +|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 35789999999999999999999999999999999865 599999999999999999999999999999999998
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 87 ~~ 88 (99)
T 2cpj_A 87 CH 88 (99)
T ss_dssp SC
T ss_pred CC
Confidence 55
No 136
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.47 E-value=2e-13 Score=123.73 Aligned_cols=75 Identities=15% Similarity=0.399 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++. |||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3578999999999999999999999999999999863 59999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 137
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=4.4e-15 Score=137.60 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeE--------EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~--------~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G 197 (826)
.+.++|||+|||+.+++++|+.+|+.||.|.. |.|+.++.+|.++|||||+|.+.++|..||..|||..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35789999999999999999999999999999 8999998899999999999999999999999999999999
Q ss_pred eEEEEEEechh
Q 003361 198 QELMLKVDQAT 208 (826)
Q Consensus 198 r~L~V~~a~~~ 208 (826)
+.|.|.++...
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999987653
No 138
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=126.17 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELMLK 203 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng--~~i~Gr~L~V~ 203 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..||| ..|+|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 35789999999999999999999999999999998764 59999999999999999998865 45999999999
Q ss_pred Eech
Q 003361 204 VDQA 207 (826)
Q Consensus 204 ~a~~ 207 (826)
|+..
T Consensus 87 ~a~~ 90 (104)
T 1wex_A 87 YSTS 90 (104)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9854
No 139
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.46 E-value=2.9e-13 Score=124.09 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCCC-CChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 126 KPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 126 ~~~~tlfVgnLp~~-vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
.+.++|||+|||+. +++++|+.+|+.||.|..|.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34689999999999 999999999999999999998 358999999999999999999999999999999999
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 854
No 140
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.46 E-value=1.3e-13 Score=133.45 Aligned_cols=77 Identities=25% Similarity=0.402 Sum_probs=72.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||||||+.+++++|+.+|+.||.|.+|.++.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 5789999999999999999999999999999999876 57999999999999999999999999999999999986
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 147 ~~ 148 (150)
T 2i2y_A 147 GE 148 (150)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 141
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=5.9e-14 Score=126.52 Aligned_cols=75 Identities=27% Similarity=0.400 Sum_probs=70.8
Q ss_pred ceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEechh
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~~ 208 (826)
++|||+|||+.+++++|+.+|+.||.|..|.++.+ ++|||||+|.+.++|..|+..|||..|+|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 6799999999999999999999999999999999998653
No 142
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=127.71 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+|||+.+++++|+.+|+.||.|..|.|+. ++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999864 45899999999999999999999999999999999986
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 5
No 143
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=120.02 Aligned_cols=75 Identities=17% Similarity=0.316 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++. +||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3588999999999999999999999999999999974 49999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 144
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.45 E-value=2.1e-13 Score=132.14 Aligned_cols=81 Identities=16% Similarity=0.322 Sum_probs=77.5
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEech
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 207 (826)
.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999998864
Q ss_pred h
Q 003361 208 T 208 (826)
Q Consensus 208 ~ 208 (826)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 145
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5e-13 Score=120.07 Aligned_cols=75 Identities=17% Similarity=0.383 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcC--CceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~--G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
.+.++|||+|||+.+++++|+.+|+.| |.|..|.++ +|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 357899999999999999999999999 999999875 3799999999999999999999999999999999
Q ss_pred Eechh
Q 003361 204 VDQAT 208 (826)
Q Consensus 204 ~a~~~ 208 (826)
|+...
T Consensus 85 ~a~~~ 89 (99)
T 2cpd_A 85 LAKPV 89 (99)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 88653
No 146
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.44 E-value=1.9e-13 Score=132.98 Aligned_cols=81 Identities=16% Similarity=0.343 Sum_probs=77.7
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999886
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 147
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=122.02 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=70.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEE-EEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~-ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
..++|||+|||+.+++++|+.+|+.||.|..| .++.++.+| +|||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 47899999999999999999999999999999 587775443 4999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
No 148
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=2.6e-13 Score=132.65 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=76.3
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
..++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3789999999999999999999999999999999999889999999999999999999999999999999999999987
No 149
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.5e-13 Score=123.10 Aligned_cols=75 Identities=17% Similarity=0.421 Sum_probs=69.7
Q ss_pred CCCceEEEcCCCC-CCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 126 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 126 ~~~~tlfVgnLp~-~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
.+.++|||+|||+ .+++++|+.+|+.||.|..+.+. +|||||+|.+.++|..|+..|||..|+|+.|.|.|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4689999999999 99999999999999999999984 48999999999999999999999999999999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 8653
No 150
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=3.5e-13 Score=118.64 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=69.1
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+|||+.+++++|+.+|+.| .|..+.+. .++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 47899999999999999999999999 99999884 567999999999999999999999999999999999975
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 151
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3e-13 Score=120.47 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=67.7
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+|||+.+++++|+.+|+.||.|..| +.++.+|. ||||+|.+.++|..||. |||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46799999999999999999999999999987 45555665 99999999999999999 99999999999998664
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 81 ~ 81 (94)
T 2e5g_A 81 Q 81 (94)
T ss_dssp C
T ss_pred c
Confidence 3
No 152
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.41 E-value=4.2e-13 Score=133.99 Aligned_cols=82 Identities=20% Similarity=0.355 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
...++|||+|||+.+++++|+.+|+.||.|.+|.++.++.+|.++|||||+|.+.++|..||.. +|..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4589999999999999999999999999999999999988999999999999999999999986 999999999999988
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 653
No 153
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.5e-13 Score=119.59 Aligned_cols=74 Identities=15% Similarity=0.336 Sum_probs=67.1
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCc-eeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK-FNIDGQELMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~-I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng-~~i~Gr~L~V~~ 204 (826)
+.++|||+|||+.+++++|+.+|+.||. |..+.+. ++|||||+|.+.++|..|+..||| ..|+|+.|.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 5789999999999999999999999999 5655552 358999999999999999999999 999999999999
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 80 a~~ 82 (93)
T 2cqh_A 80 SVS 82 (93)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 154
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=2e-13 Score=128.71 Aligned_cols=80 Identities=23% Similarity=0.219 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCce----eEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV----KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I----~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 201 (826)
...++|||+|||+.+++++|+.+|+.||.| ..|.|+.+ .+|+++|||||+|.+.++|..||.. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 357899999999999999999999999975 68999998 5999999999999999999999996 99999999999
Q ss_pred EEEech
Q 003361 202 LKVDQA 207 (826)
Q Consensus 202 V~~a~~ 207 (826)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 987643
No 155
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.40 E-value=2.8e-13 Score=128.26 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCcee--EEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVK--SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~--~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
..++|||+|||+.+++++|+.+|+.| .|. .|.|+.++. |+++|||||+|.+.++|..||.. ++..|+|+.|.|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 46889999999999999999999999 566 999999975 99999999999999999999985 88999999999987
Q ss_pred ech
Q 003361 205 DQA 207 (826)
Q Consensus 205 a~~ 207 (826)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 743
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.40 E-value=4.8e-13 Score=135.61 Aligned_cols=82 Identities=29% Similarity=0.487 Sum_probs=78.2
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 204 ~~ 205 (216)
T 2qfj_A 204 TP 205 (216)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 157
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.40 E-value=9.9e-14 Score=133.53 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=72.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+|||+.+++++|+.+|+.|| |..|.|+.++ +|+++|||||+|.+.++|..|| .||+..|+|+.|.|.++.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 578999999999999999999999999 7799999996 5999999999999999999999 689999999999998775
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 122 ~ 122 (139)
T 2hgn_A 122 T 122 (139)
T ss_dssp C
T ss_pred C
Confidence 4
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.40 E-value=7e-13 Score=135.66 Aligned_cols=80 Identities=18% Similarity=0.360 Sum_probs=74.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.+ .+.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d--~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE--TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc--CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 3578999999999999999999999999999999998 35579999999999999999999999999999999999997
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 64
No 159
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=7e-13 Score=117.45 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=62.9
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELMLK 203 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~--i~Gr~L~V~ 203 (826)
.+.++|||||||+.+++++|+.+|++||.|.+|.|+.+ ++|||||+|.+.++|.. |+|.. +.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 35889999999999999999999999999999999874 78999999999999983 46654 559999999
Q ss_pred Eechh
Q 003361 204 VDQAT 208 (826)
Q Consensus 204 ~a~~~ 208 (826)
++...
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 98764
No 160
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.2e-13 Score=124.14 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCC---CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~t---Gk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 202 (826)
...++|||+|||+.+++++|+.+|+.||.|. +.++.+..+ |.++|||||+|.+.++|..||..|+ .++|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3578999999999999999999999999999 888888766 8999999999999999999999985 478888888
Q ss_pred EEe
Q 003361 203 KVD 205 (826)
Q Consensus 203 ~~a 205 (826)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 644
No 161
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.4e-12 Score=116.78 Aligned_cols=74 Identities=15% Similarity=0.272 Sum_probs=68.1
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|| .+++++|+.+|+.||.|..|.|. .++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 5789999996 89999999999999999999984 456999999999999999999999999999999999986
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 86 ~~ 87 (97)
T 1x5p_A 86 KQ 87 (97)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 162
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.40 E-value=1.2e-12 Score=130.92 Aligned_cols=83 Identities=20% Similarity=0.433 Sum_probs=78.8
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35799999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 163
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.8e-13 Score=123.75 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=69.0
Q ss_pred CCceEEE--cCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee-----CCeE
Q 003361 127 PQTKVYV--GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI-----DGQE 199 (826)
Q Consensus 127 ~~~tlfV--gnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i-----~Gr~ 199 (826)
+.++||| |||++.+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|..|+..|||..| .|++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4788999 889999999999999999999999988643 58999999999999999999999998 7999
Q ss_pred EEEEEechh
Q 003361 200 LMLKVDQAT 208 (826)
Q Consensus 200 L~V~~a~~~ 208 (826)
|.|.++...
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999988643
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.39 E-value=3.1e-13 Score=131.43 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+. |||..|+|+.|.|.|+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 36799999999999999999999999999999999998899999999999999999999998 89999999999999986
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 165
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.39 E-value=4.1e-13 Score=124.51 Aligned_cols=73 Identities=23% Similarity=0.314 Sum_probs=65.9
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE-----EE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE-----LM 201 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~-----L~ 201 (826)
..++|||+|||+.+++++|+.+|..||.|..|.|+.+ |||||+|.+.++|..||..|||..|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4789999999999999999999999999999999875 89999999999999999999999999998 66
Q ss_pred EEEec
Q 003361 202 LKVDQ 206 (826)
Q Consensus 202 V~~a~ 206 (826)
|..+.
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 65443
No 166
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.2e-13 Score=120.47 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=64.6
Q ss_pred Cce-EEEcCCCCCCChHH----HHHHhhcC-CceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003361 128 QTK-VYVGKIAPTADSDF----VLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (826)
Q Consensus 128 ~~t-lfVgnLp~~vte~~----L~~lF~~~-G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 201 (826)
..| |||+|||+.++.+. |+.+|+.| |.|.+| +| |||||.|.+.++|.+|+..|||..|.|++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 455 99999999999987 55899999 599987 34 9999999999999999999999999999999
Q ss_pred EEEechhH
Q 003361 202 LKVDQATR 209 (826)
Q Consensus 202 V~~a~~~k 209 (826)
|.++....
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99987653
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.37 E-value=1.3e-12 Score=127.01 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=75.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G--r~L~V~~ 204 (826)
+.++|||+|||..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|+| ++|.|.|
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 46899999999999999999999999999999999998799999999999999999999999999999988 9999988
Q ss_pred e
Q 003361 205 D 205 (826)
Q Consensus 205 a 205 (826)
|
T Consensus 168 A 168 (168)
T 1b7f_A 168 A 168 (168)
T ss_dssp C
T ss_pred C
Confidence 5
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.37 E-value=1.1e-12 Score=131.05 Aligned_cols=81 Identities=15% Similarity=0.343 Sum_probs=75.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.|+.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999999988999999999999999999999986 8999999999999987
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 182 ~k 183 (196)
T 1l3k_A 182 SK 183 (196)
T ss_dssp --
T ss_pred Ch
Confidence 65
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1e-12 Score=127.00 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=73.3
Q ss_pred ceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEech
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 207 (826)
++|||+|||+.+++++|+.+|+.||.|.++.++.++ +|+++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999985 788999999999999999999999999999999999998754
No 170
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.36 E-value=1.5e-12 Score=133.14 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=71.2
Q ss_pred CCceEEEcCCC-CCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIA-PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp-~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
+.++|||+||| +.+++++|+.+|+.||.|.+|+++.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999875 3699999999999999999999999999999999987
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.36 E-value=1.3e-12 Score=113.98 Aligned_cols=71 Identities=24% Similarity=0.418 Sum_probs=66.4
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcC----C-------ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCce
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 194 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~----G-------~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~ 194 (826)
.+.++|||+|||+.+++++|+.+|+.| | .|.++.+..+ +|||||+|.+.++|..|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357899999999999999999999999 8 8999998765 599999999999999999 999999
Q ss_pred eCCeEEEEE
Q 003361 195 IDGQELMLK 203 (826)
Q Consensus 195 i~Gr~L~V~ 203 (826)
|+|+.|.|.
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999999996
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.36 E-value=1.1e-12 Score=132.95 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=75.1
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999998876
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 173
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.35 E-value=1.6e-12 Score=128.12 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=70.3
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G--r~L~V~~ 204 (826)
...+|||+||++.+++++|+.+|++||.|.+|.|... .++|||||+|.+.++|..|+..|||..|.| +.|+|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4678999999999999999999999999999998653 257899999999999999999999999965 9999999
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8553
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.35 E-value=1.6e-12 Score=125.74 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=74.2
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE--EEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE--LMLKV 204 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~--L~V~~ 204 (826)
..++|||+|||..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|+|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4678999999999999999999999999999999999889999999999999999999999999999999975 78877
Q ss_pred e
Q 003361 205 D 205 (826)
Q Consensus 205 a 205 (826)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.35 E-value=3.2e-12 Score=117.09 Aligned_cols=81 Identities=17% Similarity=0.096 Sum_probs=72.5
Q ss_pred CCceEEEcCCCC-----CCChHHHHHHhhcCCceeEEEEeccCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003361 127 PQTKVYVGKIAP-----TADSDFVLSVLKVCGTVKSWKRAQYPS-NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (826)
Q Consensus 127 ~~~tlfVgnLp~-----~vte~~L~~lF~~~G~I~~~ki~~d~~-tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L 200 (826)
+.++|+|.||.. .-++++|+.+|++||.|.+|.|+.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 578999999973 236789999999999999999998864 47899999999999999999999999999999999
Q ss_pred EEEEech
Q 003361 201 MLKVDQA 207 (826)
Q Consensus 201 ~V~~a~~ 207 (826)
.|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999865
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.35 E-value=1.4e-12 Score=127.34 Aligned_cols=79 Identities=14% Similarity=0.344 Sum_probs=74.0
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 203 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~---Gr~L~V~ 203 (826)
..++|||+|||+.+++++|+.+|+.||.|.++.++.++ +|.++|||||+|.+.++|..|+..|||..+. |++|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 47899999999999999999999999999999999985 7999999999999999999999999998777 4999999
Q ss_pred Eec
Q 003361 204 VDQ 206 (826)
Q Consensus 204 ~a~ 206 (826)
|++
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 177
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.34 E-value=2.9e-12 Score=121.70 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=69.9
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcce-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMLK 203 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGf-gFVeF~~~e~A~~Al~~Lng~~i~G--r~L~V~ 203 (826)
....|||+||++.+|+++|+.+|+.||.|.+|.++.. .+|| |||+|.+.++|..|+..|||..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4677899999999999999999999999999988764 2578 9999999999999999999999988 899999
Q ss_pred Eechh
Q 003361 204 VDQAT 208 (826)
Q Consensus 204 ~a~~~ 208 (826)
|+...
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 98654
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.33 E-value=1.9e-12 Score=125.81 Aligned_cols=80 Identities=24% Similarity=0.402 Sum_probs=74.7
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+. ++..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 47899999999999999999999999999999999998899999999999999999999998 4679999999999876
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 179
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=8.5e-12 Score=117.68 Aligned_cols=75 Identities=21% Similarity=0.186 Sum_probs=66.9
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcce-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGf-gFVeF~~~e~A~~Al~~Lng~~i~G--r~L~V~~ 204 (826)
...|||+||++.+++++|+.+|+.||.|.+|.|+.. + || |||+|.+.++|..|+..|||..|.| +.|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~----Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--N----GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--S----SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--C----CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 445789999999999999999999999999998652 2 76 9999999999999999999999987 6899998
Q ss_pred echh
Q 003361 205 DQAT 208 (826)
Q Consensus 205 a~~~ 208 (826)
+...
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 8654
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.32 E-value=4.5e-12 Score=134.52 Aligned_cols=83 Identities=13% Similarity=0.308 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCChHHHH----HHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003361 125 EKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~vte~~L~----~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L 200 (826)
..+.++|||+|||+.+++++|+ .+|+.||.|..|.++. +|+++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3468999999999999999966 8999999999999875 78899999999999999999999999999999999
Q ss_pred EEEEechhHH
Q 003361 201 MLKVDQATRE 210 (826)
Q Consensus 201 ~V~~a~~~kk 210 (826)
.|.|+.....
T Consensus 83 ~v~~a~~~~~ 92 (282)
T 3pgw_A 83 RIQYAKTDSD 92 (282)
T ss_pred EEEEeccCcc
Confidence 9999866543
No 181
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.31 E-value=3e-12 Score=120.05 Aligned_cols=74 Identities=15% Similarity=0.272 Sum_probs=68.3
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|| .+++++|+.+|+.||.|.+|.++ .++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 5789999996 69999999999999999999985 456999999999999999999999999999999999986
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 110 ~~ 111 (121)
T 2bz2_A 110 KQ 111 (121)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.31 E-value=3.4e-12 Score=129.34 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=72.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+|||+.+++++|+.+|+.||.|.+|.|+.+. +|.++|||||+|.+.++|..||..+ +..|+|+.|.|.|..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 36899999999999999999999999999999999985 7999999999999999999999865 459999999999864
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 3
No 183
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.31 E-value=3.3e-12 Score=124.79 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCC--CCcceEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 201 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tG--k~kGfgFVeF~~~e~A~~Al~~Lng~~i~---Gr~L~ 201 (826)
..++|||+|||+.+++++|+.+|+.||.|.++.++.++.+| .++|||||+|.+.++|..|+..|||..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 47899999999999999999999999999999999998776 89999999999999999999999998876 67778
Q ss_pred EEEech
Q 003361 202 LKVDQA 207 (826)
Q Consensus 202 V~~a~~ 207 (826)
|.++..
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 776643
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.29 E-value=6.6e-12 Score=123.28 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=71.1
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|+.||.|..+ ..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 57899999999999999999999999988766 3589999999999999999999999999999999999999986
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 173 ~ 173 (175)
T 1fje_B 173 E 173 (175)
T ss_dssp S
T ss_pred C
Confidence 4
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.4e-12 Score=113.10 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=63.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
+.++|||+|||+.+++++|+.+|+.||.|..|.++.+ ++|||||+|.+.++|..|+. .++.+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 5789999999999999999999999999999999764 67999999999999975432 2345689999998875
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 77 ~ 77 (88)
T 1wf0_A 77 P 77 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.27 E-value=7e-12 Score=133.68 Aligned_cols=82 Identities=12% Similarity=0.235 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCC-CChHHHHHHhhcCCceeEEEEeccCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003361 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPS-NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~-vte~~L~~lF~~~G~I~~~ki~~d~~-tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V 202 (826)
..+.++|||+|||+. +++++|+.+|+.||.|..|.++.+.. ||.++|||||+|.+.++|..|+ .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 345789999999999 99999999999999999999999864 5999999999999999999999 99999999999999
Q ss_pred EEech
Q 003361 203 KVDQA 207 (826)
Q Consensus 203 ~~a~~ 207 (826)
.|+..
T Consensus 286 ~~a~~ 290 (292)
T 2ghp_A 286 SLADK 290 (292)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99865
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.26 E-value=6.1e-12 Score=130.07 Aligned_cols=77 Identities=14% Similarity=0.243 Sum_probs=72.2
Q ss_pred CCceEEEcCCCC-CCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~-~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
+.++|||+|||+ .+++++|+.+|+.||.|.+|.++.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 578999999999 99999999999999999999998874 689999999999999999999999999999999988
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 108 ~~~ 110 (229)
T 2adc_A 108 KHQ 110 (229)
T ss_dssp SCC
T ss_pred cCc
Confidence 643
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.26 E-value=1.4e-11 Score=130.79 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=77.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
..++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003361 207 A 207 (826)
Q Consensus 207 ~ 207 (826)
.
T Consensus 174 ~ 174 (284)
T 3smz_A 174 A 174 (284)
T ss_dssp G
T ss_pred C
Confidence 5
No 189
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.24 E-value=7.4e-12 Score=130.81 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=71.0
Q ss_pred CCCCceEEEcCCCCCC---------ChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 003361 125 EKPQTKVYVGKIAPTA---------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~v---------te~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i 195 (826)
....++||||||+..+ ++++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..|+..|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4468999999999998 79999999999999999999865 59999999999999999999999999
Q ss_pred ------------CCeEEEEEEechh
Q 003361 196 ------------DGQELMLKVDQAT 208 (826)
Q Consensus 196 ------------~Gr~L~V~~a~~~ 208 (826)
.|+.|.|.|+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999654
No 190
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.24 E-value=1.1e-11 Score=126.73 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCce--eEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe----E
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV--KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ----E 199 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I--~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr----~ 199 (826)
.+.++|||+|||+.+++++|+.+|+.||.| .+++++.+. |.++|||||+|.+.++|..||..|||..|+|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 357899999999999999999999999999 899998873 66679999999999999999999999999987 5
Q ss_pred EEEEEe
Q 003361 200 LMLKVD 205 (826)
Q Consensus 200 L~V~~a 205 (826)
+.|+|+
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 888775
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.23 E-value=1.7e-11 Score=130.20 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCC-ChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 003361 126 KPQTKVYVGKIAPTA-DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (826)
Q Consensus 126 ~~~~tlfVgnLp~~v-te~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~ 204 (826)
.+.++|||+|||+.+ ++++|+.+|+.||.|.++.|+.+. +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 457899999999995 899999999999999999999985 899999999999999999999999999999999999999
Q ss_pred echhH
Q 003361 205 DQATR 209 (826)
Q Consensus 205 a~~~k 209 (826)
+....
T Consensus 261 a~~~~ 265 (284)
T 3smz_A 261 CAPGP 265 (284)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 97653
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.22 E-value=3.7e-12 Score=125.04 Aligned_cols=81 Identities=21% Similarity=0.358 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+++++|+.+|..||.|.. .++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 46899999999999999999999999998877 344455689999999999999999999995 9999999999999988
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 89 ~~~ 91 (175)
T 1fje_B 89 KGR 91 (175)
T ss_dssp CCS
T ss_pred CCc
Confidence 653
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=2.9e-11 Score=111.46 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=67.9
Q ss_pred CCceEEEcCCCCCCC-----------hHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 003361 127 PQTKVYVGKIAPTAD-----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (826)
Q Consensus 127 ~~~tlfVgnLp~~vt-----------e~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i 195 (826)
+.++|+|.||..... +++|+.+|++||.|..|.| .++ .++|||||+|.+.++|..|+..|||..|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 588999999954432 4799999999999999966 443 3789999999999999999999999999
Q ss_pred CCeEEEEEEechh
Q 003361 196 DGQELMLKVDQAT 208 (826)
Q Consensus 196 ~Gr~L~V~~a~~~ 208 (826)
+|+.|.|.++...
T Consensus 90 ~gr~l~v~~a~~~ 102 (112)
T 2dit_A 90 GGRQITAQAWDGT 102 (112)
T ss_dssp TTEECEEEECCSC
T ss_pred CCcEEEEEEeCCC
Confidence 9999999998654
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.20 E-value=4.8e-11 Score=109.20 Aligned_cols=83 Identities=17% Similarity=0.077 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCC--CCC--------hHHHHHHhhcCCceeEEEEeccCCC--CCCcceEEEEeCCHHHHHHHHHHhCCc
Q 003361 126 KPQTKVYVGKIAP--TAD--------SDFVLSVLKVCGTVKSWKRAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKF 193 (826)
Q Consensus 126 ~~~~tlfVgnLp~--~vt--------e~~L~~lF~~~G~I~~~ki~~d~~t--Gk~kGfgFVeF~~~e~A~~Al~~Lng~ 193 (826)
.|.+.|+|.|+-. .+. .++|+..|++||.|.++.|+.++.+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3578899999832 333 2589999999999999999988644 468999999999999999999999999
Q ss_pred eeCCeEEEEEEechh
Q 003361 194 NIDGQELMLKVDQAT 208 (826)
Q Consensus 194 ~i~Gr~L~V~~a~~~ 208 (826)
.|+|+.|.|.+....
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999987653
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.19 E-value=4.8e-11 Score=125.86 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
.+.++|||+|||+.+|+++|+.+|+.||.|..|.+..+ +|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 35789999999999999999999999999999999654 599999999999999999999999999999999988
Q ss_pred ch
Q 003361 206 QA 207 (826)
Q Consensus 206 ~~ 207 (826)
..
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.18 E-value=1.9e-11 Score=122.73 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=71.4
Q ss_pred CceEEEcCCCC-CCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 003361 128 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (826)
Q Consensus 128 ~~tlfVgnLp~-~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~ 206 (826)
.++|||+|||+ .+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 68999999999 99999999999999999999998874 6899999999999999999999999999999999986
Q ss_pred hh
Q 003361 207 AT 208 (826)
Q Consensus 207 ~~ 208 (826)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.16 E-value=6.2e-11 Score=118.95 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCC-ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 203 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~-Gr~L~V~ 203 (826)
++.++|||+|||..+++++|+.+|+.|| .|..+.++.+ .+|||||+|.+.++|..|+..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4589999999999999999999999999 9999999764 2689999999999999999999999999 9999999
Q ss_pred Eech
Q 003361 204 VDQA 207 (826)
Q Consensus 204 ~a~~ 207 (826)
|+.+
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9865
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.16 E-value=1.8e-11 Score=111.74 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=64.8
Q ss_pred EEcCCCCCCChHHHHHHh------------hcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 003361 132 YVGKIAPTADSDFVLSVL------------KVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 199 (826)
Q Consensus 132 fVgnLp~~vte~~L~~lF------------~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~ 199 (826)
+++||++.+++++|..+| ++||.|.+|.|+.+. +|.++|||||+|.+.++|..|+..|||..|+|+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 367788888887777666 999999999999885 6899999999999999999999999999999999
Q ss_pred EEEEEe
Q 003361 200 LMLKVD 205 (826)
Q Consensus 200 L~V~~a 205 (826)
|.|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999886
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.15 E-value=5.9e-11 Score=126.50 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=71.0
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCC-ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a 205 (826)
..++|||+|||+.+++++|+.+|+.|| .|..|.++.++ .|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 99999999985 5899999999999999999999999999999999999998
Q ss_pred chh
Q 003361 206 QAT 208 (826)
Q Consensus 206 ~~~ 208 (826)
...
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.14 E-value=7.3e-11 Score=124.46 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=73.2
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHh-CCceeC---CeEEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNID---GQELML 202 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L-ng~~i~---Gr~L~V 202 (826)
+.++|||+|||+.+++++|+.+|+.||.|.+|.++.+ .+|.++|||||+|.+.++|..||..| +|..+. |++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999999 59999999999999999999999999 455555 999999
Q ss_pred EEech
Q 003361 203 KVDQA 207 (826)
Q Consensus 203 ~~a~~ 207 (826)
.++..
T Consensus 174 ~~~~~ 178 (261)
T 3sde_A 174 EPMEQ 178 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98754
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.12 E-value=1.2e-10 Score=108.82 Aligned_cols=81 Identities=17% Similarity=0.078 Sum_probs=70.7
Q ss_pred CCceEEEcCCCCC--C---ChHHHHHHhhcCCceeEEEEeccCC----CCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003361 127 PQTKVYVGKIAPT--A---DSDFVLSVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (826)
Q Consensus 127 ~~~tlfVgnLp~~--v---te~~L~~lF~~~G~I~~~ki~~d~~----tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G 197 (826)
+.++|+|.|+-.. + .+++|+..|++||.|.+|.|+.++. ++.++|||||+|.+.++|..|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5789999998432 2 2469999999999999999998853 45678999999999999999999999999999
Q ss_pred eEEEEEEech
Q 003361 198 QELMLKVDQA 207 (826)
Q Consensus 198 r~L~V~~a~~ 207 (826)
+.|.|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 202
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.11 E-value=1.3e-10 Score=120.14 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCChHHHHHHhhcCC-ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 003361 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 203 (826)
Q Consensus 126 ~~~~tlfVgnLp~~vte~~L~~lF~~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~-Gr~L~V~ 203 (826)
.+.++|||+|||+.+++++|+.+|+.|| .|..+.++.+ .+|||||+|.+.++|..|+..|||..|+ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999999653 2589999999999999999999999999 9999999
Q ss_pred Eech
Q 003361 204 VDQA 207 (826)
Q Consensus 204 ~a~~ 207 (826)
|+.+
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9865
No 203
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.08 E-value=1.8e-10 Score=112.26 Aligned_cols=73 Identities=23% Similarity=0.414 Sum_probs=65.3
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcC----C-------ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~----G-------~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i 195 (826)
+.++|||+|||+.+++++|+.+|+.| | .|..+.+.. ++|||||+|.+.++|..|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 47899999999999999999999999 6 667766644 4699999999999999999 8999999
Q ss_pred CCeEEEEEEec
Q 003361 196 DGQELMLKVDQ 206 (826)
Q Consensus 196 ~Gr~L~V~~a~ 206 (826)
+|+.|.|.++.
T Consensus 76 ~g~~i~v~~~~ 86 (172)
T 2g4b_A 76 QGQSLKIRRPH 86 (172)
T ss_dssp TTEECEEECCS
T ss_pred cCceeeecCCc
Confidence 99999998754
No 204
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.06 E-value=2.4e-10 Score=114.10 Aligned_cols=74 Identities=20% Similarity=0.340 Sum_probs=64.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCC-----------ceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-----------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G-----------~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i 195 (826)
..++|||+|||+.+++++|+.+|+.|| .|..+.+ +.++|||||+|.+.++|..|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 478999999999999999999999994 4555544 455799999999999999999 7999999
Q ss_pred CCeEEEEEEech
Q 003361 196 DGQELMLKVDQA 207 (826)
Q Consensus 196 ~Gr~L~V~~a~~ 207 (826)
+|+.|.|.++..
T Consensus 76 ~g~~i~v~~~~~ 87 (198)
T 2yh0_A 76 QGQSLKIRRPHD 87 (198)
T ss_dssp TTEEEEEECCCC
T ss_pred cCceEEEeCCCC
Confidence 999999988754
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.97 E-value=8.1e-10 Score=121.21 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=66.1
Q ss_pred CCCCceEEEcC--CCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC---Ce-
Q 003361 125 EKPQTKVYVGK--IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQ- 198 (826)
Q Consensus 125 ~~~~~tlfVgn--Lp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~---Gr- 198 (826)
..+..+||||| |++.+++++|+++|++||.|.++.+.. ++|||||+|.+.++|..|+..|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 44688999999 688999999999999999999987754 3599999999999999999999999883 45
Q ss_pred -EEEEEEech
Q 003361 199 -ELMLKVDQA 207 (826)
Q Consensus 199 -~L~V~~a~~ 207 (826)
.|.|.+...
T Consensus 89 ~~ly~~~~~~ 98 (345)
T 3tht_A 89 ITLYLNFVEK 98 (345)
T ss_dssp EECEEEECSS
T ss_pred eEEEEEEeec
Confidence 577777643
No 206
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=3.8e-09 Score=95.77 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=56.6
Q ss_pred CCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEechh
Q 003361 138 PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (826)
Q Consensus 138 ~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~~ 208 (826)
..+++++|+.+|++||.|..|.|+ +.++|||||+|.+.++|..||..++| +.|+.|.|.|+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 468999999999999999999987 46789999999999999999997555 67999999997543
No 207
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.91 E-value=5.4e-09 Score=97.02 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=67.7
Q ss_pred CCceEEEcCCCCCCC----------hHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003361 127 PQTKVYVGKIAPTAD----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (826)
Q Consensus 127 ~~~tlfVgnLp~~vt----------e~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 196 (826)
+.++|.+.|+-..-. .++|+..|++||.|.++.|..+. ++|||||+|.+.++|..|+..|||..|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467888888744222 24789999999999999997652 5899999999999999999999999999
Q ss_pred CeEEEEEEechhHHHHHH
Q 003361 197 GQELMLKVDQATREYLER 214 (826)
Q Consensus 197 Gr~L~V~~a~~~kk~le~ 214 (826)
|+.|.|.+... ..|...
T Consensus 82 GR~i~v~~~~~-~~y~~~ 98 (114)
T 3s6e_A 82 GKMITAAYVPL-PTYHNL 98 (114)
T ss_dssp TEECEEEEECH-HHHHHH
T ss_pred CEEEEEEEEcH-HHHHHh
Confidence 99999999854 344433
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=1.7e-08 Score=94.45 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCC-CChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCC-HHHHHHHHHHh--CCceeCCeEE
Q 003361 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES-AEGVLRALRLL--NKFNIDGQEL 200 (826)
Q Consensus 125 ~~~~~tlfVgnLp~~-vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~-~e~A~~Al~~L--ng~~i~Gr~L 200 (826)
-++++.|||+||++. ++.++|+.+|+.||.|.+|.++.+. .+|||.|.+ ..+|..|+..| +|+.|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 346899999999999 9999999999999999999998875 369999999 89999999999 4889999998
Q ss_pred EEEEec--hhHHHHHHHHHh
Q 003361 201 MLKVDQ--ATREYLERYVDK 218 (826)
Q Consensus 201 ~V~~a~--~~kk~le~~k~k 218 (826)
.+.+-. .-+.|+....+.
T Consensus 89 ~~evL~GeeE~~yw~Ki~ed 108 (121)
T 1owx_A 89 TWEVLEGEVEKEALKKIIED 108 (121)
T ss_dssp EEEECCHHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHH
Confidence 888754 446677766653
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=1.8e-08 Score=89.15 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=62.3
Q ss_pred CCCceEEEcCCCC----CCCh----HHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003361 126 KPQTKVYVGKIAP----TADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (826)
Q Consensus 126 ~~~~tlfVgnLp~----~vte----~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G 197 (826)
+|..||+|...+. ...+ .+|...|+.||.|..++++.+ .+||+|.+.++|.+||. |||+.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 3577899888772 3334 579999999999999999886 38999999999999999 99999999
Q ss_pred eEEEEEEech
Q 003361 198 QELMLKVDQA 207 (826)
Q Consensus 198 r~L~V~~a~~ 207 (826)
+.|+|.++..
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999987643
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=1e-07 Score=84.77 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=61.4
Q ss_pred CCCceEEEcCCCCC------CCh---HHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003361 126 KPQTKVYVGKIAPT------ADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (826)
Q Consensus 126 ~~~~tlfVgnLp~~------vte---~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 196 (826)
+|..||+|..++.. ..+ .+|.+.|..||.|..++++.+. +||+|.+.++|.+||. |||+.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 35789999988743 332 4688999999999999999883 9999999999999999 9999999
Q ss_pred CeEEEEEEe
Q 003361 197 GQELMLKVD 205 (826)
Q Consensus 197 Gr~L~V~~a 205 (826)
|+.|+|.+-
T Consensus 84 Gr~L~V~~k 92 (95)
T 1ufw_A 84 GRAVKISGP 92 (95)
T ss_dssp TEEEEEECC
T ss_pred CeEEEEecc
Confidence 999999753
No 211
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.37 E-value=4.9e-07 Score=92.69 Aligned_cols=68 Identities=19% Similarity=0.073 Sum_probs=60.7
Q ss_pred CChHHHHHHhhcCCceeEEEEeccC----CCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEech
Q 003361 140 ADSDFVLSVLKVCGTVKSWKRAQYP----SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (826)
Q Consensus 140 vte~~L~~lF~~~G~I~~~ki~~d~----~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~~a~~ 207 (826)
-.+++|...|++||.|.++.|+.+. .+|.++||+||+|.+.++|.+|+..|||..++||.|.|.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3456899999999999999998553 3458999999999999999999999999999999999999764
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.7e-05 Score=71.97 Aligned_cols=72 Identities=10% Similarity=0.070 Sum_probs=67.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcC-----CceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVC-----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~-----G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 201 (826)
..++|-+-|||.++++..|+.|+..+ |.|+.+.++.|. +-|+|+|.+...|.+|.-.|||..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47899999999999999999999999 999999999885 6799999999999999999999999999999
Q ss_pred EEE
Q 003361 202 LKV 204 (826)
Q Consensus 202 V~~ 204 (826)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 964
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.07 E-value=0.0011 Score=59.99 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=64.4
Q ss_pred CCceEEEcCCCCCC-Ch----HHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003361 127 PQTKVYVGKIAPTA-DS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (826)
Q Consensus 127 ~~~tlfVgnLp~~v-te----~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 201 (826)
.+++|+|.||+..+ .. ..++.+|..|+.+.++.....= .-..|.|.++++|.+|-..|||..++|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 46899999998855 32 4678999999999999876642 3568999999999999999999999999999
Q ss_pred EEEechh
Q 003361 202 LKVDQAT 208 (826)
Q Consensus 202 V~~a~~~ 208 (826)
|-+++.+
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998743
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.27 E-value=0.057 Score=47.71 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=56.6
Q ss_pred ceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCC--CcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003361 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID 196 (826)
Q Consensus 129 ~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk--~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 196 (826)
++|.|.+||+++|++++.+.++.++.+..+..+.+..+.+ .-+-|||.|.+.+++..-...++|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999999877776666554433 2356999999999999999999998764
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.79 E-value=0.11 Score=46.37 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=44.6
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L 190 (826)
.+.++| +.|..+...+|..+|+.||.| .|..+-| .-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 344555 999999999999999999844 3555566 48999999999999999876
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.40 E-value=0.11 Score=47.94 Aligned_cols=71 Identities=13% Similarity=0.074 Sum_probs=56.5
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEEe
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QELMLKVD 205 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~G-r~L~V~~a 205 (826)
..+.|.|-+.|+.. -..|...|.+||.|....... ...+-.|.|.+..+|.+||.. ||..|+| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 46788888888774 567778899999999887621 236999999999999999995 9999985 55666553
No 217
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.36 E-value=0.11 Score=46.68 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=56.8
Q ss_pred CCceEEEcCCCCCCChHHHHHHhhc-----CCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003361 127 PQTKVYVGKIAPTADSDFVLSVLKV-----CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (826)
Q Consensus 127 ~~~tlfVgnLp~~vte~~L~~lF~~-----~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~ 201 (826)
-..+|.|.|||+.+.++.|.-+|.+ =|.|.+|.... +-|+|+|.+...|.+.|.. ..+.|+|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4789999999999999999999986 25788887643 4689999999999998873 47788888888
Q ss_pred EE
Q 003361 202 LK 203 (826)
Q Consensus 202 V~ 203 (826)
|.
T Consensus 78 V~ 79 (104)
T 2dhx_A 78 LR 79 (104)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 218
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.58 E-value=0.073 Score=47.56 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=44.5
Q ss_pred EEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 003361 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (826)
Q Consensus 131 lfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln 191 (826)
||+-+.|..+.-.+|..+|+.|| -..|..+-| .-|||.|.+++.|..|+..++
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 44449999999999999999999 445666666 489999999999999998764
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.92 E-value=0.2 Score=47.03 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=55.9
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCC---------CCC-----CcceEEEEeCCHHHHHHHHHHhCCc
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---------NGT-----PKGFGFCEFESAEGVLRALRLLNKF 193 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~---------tGk-----~kGfgFVeF~~~e~A~~Al~~Lng~ 193 (826)
...|.|-+.|... ...+...|++||.|..-.-+.... +.+ ...+-.|.|.+..+|.+||.. ||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 3456666665544 446677899999997732111100 011 236779999999999999995 999
Q ss_pred eeCCeEEEEEEechhHHHHHHHHHhh
Q 003361 194 NIDGQELMLKVDQATREYLERYVDKK 219 (826)
Q Consensus 194 ~i~Gr~L~V~~a~~~kk~le~~k~kk 219 (826)
.|+|..|-|... .+..++++...+
T Consensus 85 ii~G~mIGV~Py--~~~~ve~l~~~~ 108 (132)
T 3p3d_A 85 VFNGVLLGVIPY--TKDAVERLQKRK 108 (132)
T ss_dssp EETTEECEEEEC--CHHHHHHHC---
T ss_pred EeCcEEEEEEEC--CHHHHHHHhcCC
Confidence 999986666554 455565554444
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=91.65 E-value=0.13 Score=49.05 Aligned_cols=37 Identities=19% Similarity=0.010 Sum_probs=30.4
Q ss_pred EEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 003361 157 SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (826)
Q Consensus 157 ~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i 195 (826)
+++|+.+. +.++|||||+|.+.++|.+|+..+++...
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~ 38 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNG 38 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCC
Confidence 56777763 47899999999999999999988876443
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.86 E-value=0.11 Score=49.17 Aligned_cols=46 Identities=22% Similarity=0.168 Sum_probs=38.8
Q ss_pred EEEeccCCCCCCcceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEEec
Q 003361 158 WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVDQ 206 (826)
Q Consensus 158 ~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L-ng~~i~Gr~L~V~~a~ 206 (826)
+.+..+ ....+|+++|+|.+.++|.+|+..| ||..|+| .|.|+++.
T Consensus 3 ~al~l~--g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 3 YKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp EEEEEC--CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred eEeeec--cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 344443 4678999999999999999999999 9999999 99987654
No 222
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=88.85 E-value=0.55 Score=41.83 Aligned_cols=69 Identities=7% Similarity=0.048 Sum_probs=50.8
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCC--CcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID 196 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk--~kGfgFVeF~~~e~A~~Al~~Lng~~i~ 196 (826)
.-.|.|..||+++|++++.+.++.+-.+.....+....+-+ .-.-|||.|.+.+++..-...++|+.+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 56899999999999999988888765543222222222222 1246899999999999999999998764
No 223
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=86.94 E-value=0.33 Score=54.96 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=45.7
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 198 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr 198 (826)
.++|||. .|..++..+|..+|++||.|.++.+-.+ .| .|+.|+|.+.+++..++.. .+..+.+.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~~-~~~p~~~~ 116 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQKESIGSLQNG-THTPXXXX 116 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC---CCHHHHSS-CCCCCCBC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCCHHHHHHHHhc-cCCCcccc
Confidence 5789997 7999999999999999999999988654 23 7999999999999877653 34444333
No 224
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=66.23 E-value=2.1 Score=32.10 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 003361 782 KASQMLELLQTILDDEAEMFVLKM 805 (826)
Q Consensus 782 ~p~~l~~~l~~~lde~a~~fv~kl 805 (826)
+-..||+++..||+.+|+.||...
T Consensus 15 ~~D~lLDeId~vLE~NAeeFV~~f 38 (44)
T 3m91_B 15 ETDDLLDEIDDVLEENAEDFVRAY 38 (44)
T ss_dssp HHHHHHHHHHHHHHHTC-------
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345899999999999999999753
No 225
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=66.18 E-value=10 Score=43.36 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=45.5
Q ss_pred CceEEEcCCCCCCChHHHHHHhhcCCceeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 003361 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (826)
Q Consensus 128 ~~tlfVgnLp~~vte~~L~~lF~~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln 191 (826)
...++|+ +|..+...+|..+|+.||. .+|.++.+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3456665 8888999999999999994 56666665 479999999999999999884
No 226
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=55.31 E-value=31 Score=30.35 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=47.6
Q ss_pred HhhhhhhhHHHHHHhhcCcchh--HHHHHHHHhhhccCCHHHHHHHHHHhhhHH-HH---HHHHHHH
Q 003361 746 LHERMRPWISKKITEFLGEEET--TLVDYIVSSTQDHVKASQMLELLQTILDDE-AE---MFVLKMW 806 (826)
Q Consensus 746 ~~~~~~pwi~kki~e~lG~ee~--~lv~~i~~~l~~~~~p~~l~~~l~~~lde~-a~---~fv~klW 806 (826)
+-+.||--|.+|...+=-+-|+ .+-+||+=.+....++..++.+|...+|.= .+ .||.-.+
T Consensus 6 i~~nLK~ivaekL~~~~NF~EDv~YVAEyIvlLisNg~s~~sivqELssLFd~v~~~a~~~vVqt~F 72 (104)
T 2v75_A 6 YTENLKVIVAEKLAGIPNFNEDIKYVAEYIVLLIVNGGTVESVVDELASLFDSVSRDTLANVVQTAF 72 (104)
T ss_dssp CHHHHHHHHHHHHTTSTTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCChHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 3456788899998888555444 488999999999999999999999999953 33 5665544
No 227
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=41.26 E-value=12 Score=26.23 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=16.3
Q ss_pred HHHHHHhhcCcchhHHHHHHHHhhh
Q 003361 754 ISKKITEFLGEEETTLVDYIVSSTQ 778 (826)
Q Consensus 754 i~kki~e~lG~ee~~lv~~i~~~l~ 778 (826)
+..||+++||+.+=.=+|+|++.+.
T Consensus 7 ~ElKiI~l~Gek~~e~~d~vi~l~~ 31 (34)
T 3qks_C 7 FELKIIDILGEKDFDDFDYIIKLIT 31 (34)
T ss_dssp HHHHHHHHC------CHHHHHHHTT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHH
Confidence 4689999999988888899998875
No 228
>3m9d_G Prokaryotic ubiquitin-like protein PUP; alpha helix coil COIL, 5 beta-strand barrel, ATP-binding, CH nucleotide-binding, proteasome; 4.50A {Mycobacterium tuberculosis}
Probab=36.42 E-value=5.4 Score=32.64 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 003361 782 KASQMLELLQTILDDEAEMFVLKM 805 (826)
Q Consensus 782 ~p~~l~~~l~~~lde~a~~fv~kl 805 (826)
+-..||++|..||+.+|+.||...
T Consensus 39 ~~D~lLDeId~vLe~NAeefV~~f 62 (68)
T 3m9d_G 39 ETDDLLDEIDDVLEENAEDFVRAY 62 (68)
T ss_dssp TTTTHHHHHTTTSSSCC-------
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445899999999999999999753
No 229
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=26.40 E-value=1.2e+02 Score=24.72 Aligned_cols=67 Identities=9% Similarity=0.120 Sum_probs=39.8
Q ss_pred eEEEcC-CCCCCChHHHHHHhhcCCc-----eeEEEEeccCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003361 130 KVYVGK-IAPTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (826)
Q Consensus 130 tlfVgn-Lp~~vte~~L~~lF~~~G~-----I~~~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~i~Gr~L~V~ 203 (826)
+|||.. --..+...+|..++..-+. |-.+.+ .+ .|.||+-... .+..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i-~d-------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITI-MD-------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEE-CS-------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEE-eC-------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 456532 1235566677777765443 445555 33 4888887754 4667888899999999999887
Q ss_pred Ee
Q 003361 204 VD 205 (826)
Q Consensus 204 ~a 205 (826)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 54
Done!