Query 003362
Match_columns 826
No_of_seqs 244 out of 308
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 22:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2769 Putative u4/u6 small n 100.0 3E-126 6E-131 1036.6 33.9 422 338-824 96-521 (522)
2 PF08572 PRP3: pre-mRNA proces 100.0 5.5E-70 1.2E-74 558.4 20.6 221 440-671 1-223 (223)
3 PF06544 DUF1115: Protein of u 100.0 1.1E-40 2.4E-45 315.4 11.1 128 693-820 1-128 (128)
4 TIGR01642 U2AF_lg U2 snRNP aux 97.4 9.2E-05 2E-09 83.8 3.2 16 333-348 226-241 (509)
5 KOG4676 Splicing factor, argin 97.3 7.6E-05 1.6E-09 82.8 1.2 8 74-81 334-341 (479)
6 TIGR01642 U2AF_lg U2 snRNP aux 97.0 0.00044 9.6E-09 78.4 3.1 25 619-646 406-430 (509)
7 KOG2888 Putative RNA binding p 94.9 0.022 4.7E-07 62.8 3.8 13 74-86 327-339 (453)
8 PF06495 Transformer: Fruit fl 94.9 0.013 2.9E-07 59.4 1.9 12 1-12 1-12 (182)
9 PF04940 BLUF: Sensors of blue 94.8 0.068 1.5E-06 49.1 6.0 66 711-795 27-92 (93)
10 TIGR01622 SF-CC1 splicing fact 94.6 0.016 3.5E-07 65.1 1.7 18 792-809 412-429 (457)
11 KOG0670 U4/U6-associated splic 93.9 0.03 6.5E-07 65.3 2.1 17 627-643 719-735 (752)
12 KOG1847 mRNA splicing factor [ 92.7 0.054 1.2E-06 64.0 1.7 11 184-194 843-853 (878)
13 KOG0147 Transcriptional coacti 91.5 0.12 2.7E-06 60.2 2.8 12 620-631 441-452 (549)
14 KOG0147 Transcriptional coacti 91.4 0.11 2.3E-06 60.6 2.2 16 333-348 323-338 (549)
15 KOG0670 U4/U6-associated splic 90.1 0.2 4.4E-06 58.8 2.9 13 88-100 186-198 (752)
16 KOG0415 Predicted peptidyl pro 89.0 0.29 6.2E-06 54.9 2.9 19 112-130 449-467 (479)
17 KOG0415 Predicted peptidyl pro 82.9 0.55 1.2E-05 52.8 1.2 8 43-50 390-397 (479)
18 PRK14432 acylphosphatase; Prov 80.1 3.6 7.8E-05 38.1 5.3 45 706-750 17-63 (93)
19 KOG4246 Predicted DNA-binding 79.8 1.3 2.8E-05 54.2 2.9 48 627-676 906-959 (1194)
20 KOG2548 SWAP mRNA splicing reg 78.6 0.93 2E-05 53.1 1.2 10 215-224 508-517 (653)
21 KOG4246 Predicted DNA-binding 77.6 1.3 2.7E-05 54.3 1.9 9 438-446 702-710 (1194)
22 KOG0120 Splicing factor U2AF, 74.9 1.8 3.9E-05 50.9 2.2 7 443-449 338-344 (500)
23 KOG1049 Polyadenylation factor 74.0 2.2 4.8E-05 50.2 2.7 31 90-120 465-495 (538)
24 PRK14421 acylphosphatase; Prov 69.2 5 0.00011 37.7 3.3 45 706-750 19-64 (99)
25 PRK14420 acylphosphatase; Prov 68.3 5.4 0.00012 36.4 3.3 45 706-750 17-62 (91)
26 PRK14436 acylphosphatase; Prov 68.0 5.3 0.00012 36.8 3.2 46 705-750 18-64 (91)
27 PRK14452 acylphosphatase; Prov 67.6 5.4 0.00012 38.0 3.3 47 704-750 33-80 (107)
28 PRK14424 acylphosphatase; Prov 67.1 5.7 0.00012 37.0 3.2 45 705-749 21-66 (94)
29 PRK14441 acylphosphatase; Prov 66.4 6.3 0.00014 36.4 3.3 44 706-749 20-64 (93)
30 PRK14430 acylphosphatase; Prov 66.1 6.1 0.00013 36.5 3.2 43 706-748 19-62 (92)
31 PF00708 Acylphosphatase: Acyl 65.9 6.1 0.00013 35.7 3.1 49 703-751 16-65 (91)
32 PRK14427 acylphosphatase; Prov 65.1 6.7 0.00014 36.3 3.3 46 705-750 20-66 (94)
33 PRK14445 acylphosphatase; Prov 64.8 7.5 0.00016 35.7 3.5 44 706-749 19-63 (91)
34 PRK14449 acylphosphatase; Prov 64.1 7 0.00015 35.8 3.2 45 706-750 18-63 (90)
35 PRK14435 acylphosphatase; Prov 63.4 7 0.00015 35.9 3.1 45 706-750 17-62 (90)
36 PRK14429 acylphosphatase; Prov 63.3 7.5 0.00016 35.6 3.2 46 706-751 17-63 (90)
37 PRK14440 acylphosphatase; Prov 62.6 7.9 0.00017 35.6 3.2 44 706-749 18-62 (90)
38 PRK14448 acylphosphatase; Prov 62.5 7.5 0.00016 35.7 3.1 44 706-749 17-61 (90)
39 PRK14426 acylphosphatase; Prov 62.2 7.7 0.00017 35.7 3.1 46 705-750 18-64 (92)
40 PRK14437 acylphosphatase; Prov 61.7 7.7 0.00017 37.1 3.1 48 702-749 34-82 (109)
41 KOG0334 RNA helicase [RNA proc 61.0 4.3 9.3E-05 51.1 1.6 6 470-475 599-604 (997)
42 PRK14433 acylphosphatase; Prov 60.8 9 0.0002 35.0 3.3 45 706-750 16-61 (87)
43 PRK14442 acylphosphatase; Prov 60.3 9.7 0.00021 35.0 3.4 44 706-749 19-63 (91)
44 PRK14422 acylphosphatase; Prov 59.3 10 0.00022 35.1 3.4 46 705-750 20-66 (93)
45 PRK14423 acylphosphatase; Prov 58.6 10 0.00022 35.0 3.2 47 706-752 20-67 (92)
46 PRK14438 acylphosphatase; Prov 58.5 10 0.00022 34.9 3.2 44 706-749 18-62 (91)
47 PRK14451 acylphosphatase; Prov 57.3 11 0.00024 34.6 3.2 45 706-750 18-63 (89)
48 KOG1874 KEKE-like motif-contai 56.9 24 0.00052 45.7 6.9 18 234-251 1344-1361(1477)
49 PRK14443 acylphosphatase; Prov 56.9 12 0.00026 34.9 3.4 45 706-750 19-64 (93)
50 PRK14446 acylphosphatase; Prov 55.0 14 0.00029 34.1 3.4 44 707-750 18-62 (88)
51 PRK10363 cpxP periplasmic repr 53.9 60 0.0013 33.6 8.0 76 584-675 46-130 (166)
52 PRK14425 acylphosphatase; Prov 53.1 14 0.0003 34.3 3.2 45 705-749 20-65 (94)
53 PRK14450 acylphosphatase; Prov 52.9 14 0.0003 33.9 3.2 44 706-749 17-62 (91)
54 PRK14444 acylphosphatase; Prov 51.6 16 0.00035 33.7 3.4 45 706-750 19-64 (92)
55 PRK14439 acylphosphatase; Prov 50.5 16 0.00034 37.6 3.4 46 705-750 89-135 (163)
56 PRK14431 acylphosphatase; Prov 50.4 21 0.00046 32.8 3.9 44 707-750 18-61 (89)
57 PRK14434 acylphosphatase; Prov 49.4 17 0.00036 33.6 3.1 45 706-750 17-64 (92)
58 PRK14428 acylphosphatase; Prov 49.1 18 0.00038 34.0 3.2 45 705-749 22-67 (97)
59 COG1254 AcyP Acylphosphatases 48.7 18 0.0004 33.7 3.2 49 701-749 14-63 (92)
60 KOG0132 RNA polymerase II C-te 48.0 8.2 0.00018 47.5 1.1 9 384-392 710-718 (894)
61 PRK14447 acylphosphatase; Prov 47.8 22 0.00048 32.9 3.7 44 706-749 19-64 (95)
62 KOG2812 Uncharacterized conser 47.6 12 0.00027 42.4 2.3 13 143-155 140-152 (426)
63 PRK10455 periplasmic protein; 46.7 91 0.002 31.8 8.1 22 585-606 53-74 (161)
64 PF06495 Transformer: Fruit fl 45.4 10 0.00022 39.3 1.1 6 149-154 118-123 (182)
65 KOG1882 Transcriptional regula 43.4 17 0.00037 39.6 2.4 10 228-237 150-159 (293)
66 PRK12751 cpxP periplasmic stre 42.5 1.2E+02 0.0027 31.1 8.3 79 584-675 52-136 (162)
67 KOG2217 U4/U6.U5 snRNP associa 39.0 13 0.00027 45.3 0.8 15 462-476 280-294 (705)
68 PF13801 Metal_resist: Heavy-m 35.8 2.3E+02 0.0051 25.4 8.4 79 586-675 39-124 (125)
69 KOG3360 Acylphosphatase [Energ 30.3 71 0.0015 30.5 4.0 68 712-794 29-97 (98)
70 PF08690 GET2: GET complex sub 29.8 41 0.0009 37.5 2.9 26 589-614 2-32 (302)
71 COG5154 BRX1 RNA-binding prote 23.4 69 0.0015 34.5 2.9 39 634-672 231-269 (283)
72 PRK05320 rhodanese superfamily 22.2 1E+02 0.0023 33.4 4.1 59 691-750 4-64 (257)
73 PRK01415 hypothetical protein; 20.8 1.1E+02 0.0024 33.3 3.9 59 691-750 6-66 (247)
74 PRK12750 cpxP periplasmic repr 20.8 3.8E+02 0.0082 27.6 7.6 17 585-601 49-65 (170)
No 1
>KOG2769 consensus Putative u4/u6 small nuclear ribonucleoprotein [RNA processing and modification]
Probab=100.00 E-value=2.7e-126 Score=1036.58 Aligned_cols=422 Identities=51% Similarity=0.766 Sum_probs=370.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCccccCCCCCCCCCCCC--CCCCCCCCceEecCCC--CcccCCCCeeeccCCCccc
Q 003362 338 TNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAV--PQKPTKAPVLRVDALG--REIDEHGNVVNRTKPSNLS 413 (826)
Q Consensus 338 ~~~ea~~r~~~laa~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~k~~~L~LD~~G--R~ID~~GkvI~~~kp~~~s 413 (826)
..+++++|++.|+..+ ++++.+...++ ...|++++.|+.|+.| |.||+.|++|. ++|...+
T Consensus 96 ~~~~~~~r~~~L~~~~--------------~~~~~t~~~~~~~a~~~tkg~~l~~~~le~~r~i~e~~~~i~-t~~~~~~ 160 (522)
T KOG2769|consen 96 QILEAVKRPQELAQNI--------------QNSIRTPDMPISKAIKQTKGAVLRQDALEKKRKIDELGNVID-TKPSNLS 160 (522)
T ss_pred HHHHHHhhhhhhcccc--------------ccccCCcccchhhhhcccccceeehhhhhhhhhHhhhcchhh-ccccccc
Confidence 4468999999986652 23334444333 5688889999999999 99999999999 7887777
Q ss_pred chhhhhhhhhhhHHHhcCCCccCCCCCCCCCCCCCCCCcccccCCCccceeeccCChhHHHHHHHHHHhhhhhHhHHHHH
Q 003362 414 TLKVNINKQKKDAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQ 493 (826)
Q Consensus 414 TLKaNir~~k~e~f~~~k~~~~~~~~~npyfD~r~~~~~~k~~r~kR~~f~F~ekGk~~kqAe~lR~k~ql~e~~~~~lk 493 (826)
+|..|+ |++ ... ...| .+++|+||++|+|++.|++.|.++++ +.|+
T Consensus 161 ~li~n~-------------------------d~~-~~~--~~~r-~rr~f~f~e~gkf~~~an~~r~~a~l-----e~Lq 206 (522)
T KOG2769|consen 161 GLIPNL-------------------------DPR-TKK--PRKR-GRRTFLFHESGKFIKLANRHRYKAQL-----ERLQ 206 (522)
T ss_pred cccccc-------------------------Chh-hcc--chhc-cccceeecccchHHHHHHHHHHHHHH-----HHHH
Confidence 766554 443 122 2234 55699999999999999999987665 7899
Q ss_pred HHHHHHHHhcCCCCCCcchhHHHhhhhccCCCCCCCCccccccccccCCCCCCCCCcccchhhhhccccccceeeCCCCC
Q 003362 494 AKQAQLAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRPI 573 (826)
Q Consensus 494 ~~~a~~aka~~~~~~~~~l~e~~~~~~~k~~~~~~iP~VEWWD~~iL~~~~y~~i~~~~~~~~~i~~~~It~yVEHPvpi 573 (826)
.+|++++++ +||++ ++.++..++ .++||+|||||.+||+.+.|.+ + +...|....||+|||||+||
T Consensus 207 ~eis~~a~k---~gI~~-~~~la~~~p-----~~~iP~iEwwD~~il~~~d~~d--E---n~~~i~~~~it~~IeHP~~~ 272 (522)
T KOG2769|consen 207 NEISQAARK---TGIST-ATKLALIAP-----KDDIPAIEWWDSNILTNDDTID--E---NHLKIDQSIITNLIEHPIPM 272 (522)
T ss_pred HHHHHHHHh---cCCch-hhhhhhccC-----CCCCchhhhhcccccccCCccc--c---cchhhhHHHHHHHhcCCccc
Confidence 999998874 45766 677777665 3899999999999998873332 2 12234356799999999999
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhhhhhhccccCCCChHHHHHHHHHH
Q 003362 574 EPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAA 653 (826)
Q Consensus 574 ~pp~e~~~p~~~plyLTKKEqKKlRRqrR~e~~KEkQdKIRLGL~PPPpPKVKLSNLMrVLg~eAV~DPTkvEa~VR~Qm 653 (826)
.||.++..|+++|||||||||||||||+|.|++||+|+||||||+|||+|||||||||+|||+|||||||+||++||.||
T Consensus 273 ~PP~e~~~p~~l~vyLTKKErKKLRRQ~R~ea~KEkqekIrLGL~~ppePKVKiSNLMrVLgsEAiqDPTK~E~~VR~Q~ 352 (522)
T KOG2769|consen 273 LPPAENLTPVSLPVYLTKKERKKLRRQRRKEARKEKQEKIRLGLEPPPEPKVKLSNLMRVLGSEAIQDPTKLEAEVRDQM 352 (522)
T ss_pred CCCcccCCCCccceeecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHhhhccccCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHhhhcCCCCCCceEEEEEEEccCCCCccccccccccccccceeEEEEcCCceEEE
Q 003362 654 AEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVV 733 (826)
Q Consensus 654 aeR~~~He~~N~eRKLT~EqRreKk~~Kl~eD~~s~gv~~aVyrI~~Lsnp~hrFKV~~NAqQl~LTG~~li~~~~nlVV 733 (826)
|+|+++||++|++||||++||++|+.+|+.+|+ +.||||+||+|++|+||++||||++||+||+|||||||+.+|||||
T Consensus 353 aeR~kaHe~~N~aRKLT~~qkreKk~rKl~ED~-st~v~~~V~r~K~l~~p~~rFKve~NAkql~ltG~~vl~~d~~vvV 431 (522)
T KOG2769|consen 353 AERQKAHEDENAARKLTPEQKREKKERKLFEDP-STGVHCSVYRIKNLQNPKKRFKVEMNAKQLQLTGVCVLHRDMNVVV 431 (522)
T ss_pred HHHHHHhhhhhhhhcCCHHHHHHHHHhhhccCC-CceEEEEEEEEecccCCccceeeeechhhhceeeeEEEecCCcEEE
Confidence 999999999999999999999999999999998 6899999999999999999999999999999999999999999999
Q ss_pred EecchHHHHHHHHHHhhhccCCccccCCCccccccCCCCCCeeEEEEeeecCCCCCCCceeEecCCHHHHHHHHHhcCch
Q 003362 734 VEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVA 813 (826)
Q Consensus 734 VEGG~KsiKkYkkLMl~RIkW~E~~~~~~d~~de~~d~~~N~C~LVWEG~vk~r~F~~w~~k~c~te~~Are~L~~~~~e 813 (826)
||||+||||||++|||+||||+|.+.-. .++|++.+..+|+|+|||||++.+++|+.|+|++|+|+.+|++||++|||+
T Consensus 432 vEGg~Ka~KkykrLMl~RIkW~e~~~~k-~d~~~e~~~~~N~C~lvWEG~~~rr~F~~~~~k~c~~e~~Ar~~f~k~gve 510 (522)
T KOG2769|consen 432 VEGGPKAQKKYKRLMLKRIKWEEDFELK-KDEDEEAVNGGNKCVLVWEGTVQRRSFREFKFKECPTEKMAREFFEKHGVE 510 (522)
T ss_pred EecCHHHHHHHHHHHHhhcCchhhhhhc-ccchhhccCCCceEEEEeeccccCCcccceeEEecCcHHHHHHHHHHcchH
Confidence 9999999999999999999999996311 245566778999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcccC
Q 003362 814 HYWDLAVNFND 824 (826)
Q Consensus 814 hYWdlA~~~~~ 824 (826)
||||||++|+.
T Consensus 511 HyWdLa~s~s~ 521 (522)
T KOG2769|consen 511 HYWDLAYSYSV 521 (522)
T ss_pred HHHHHHhhccC
Confidence 99999999986
No 2
>PF08572 PRP3: pre-mRNA processing factor 3 (PRP3); InterPro: IPR013881 Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor. The human PRP3 has been implicated in autosomal retinitis pigmentosa [].
Probab=100.00 E-value=5.5e-70 Score=558.39 Aligned_cols=221 Identities=49% Similarity=0.806 Sum_probs=183.2
Q ss_pred CCCCCCCCCCCCcccccCCCccceeeccCChhHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHhhh
Q 003362 440 VNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQAKQAQLAKAKGGTDINPNLIEVAERV 519 (826)
Q Consensus 440 ~npyfD~r~~~~~~k~~r~kR~~f~F~ekGk~~kqAe~lR~k~ql~e~~~~~lk~~~a~~aka~~~~~~~~~l~e~~~~~ 519 (826)
+||||||++... +..++++++|+||++|+|+++|+++|.+++++ +++.++++.++. .++... ..+.+..
T Consensus 1 ~npy~d~~~~~~--~~~~r~~r~l~F~e~Gk~~~~a~~~R~~~~~e-----~~~~~~~~~~~~---~g~~~~-~~~~~~~ 69 (223)
T PF08572_consen 1 ENPYFDPRLKKS--KPKKRKRRALKFHEKGKFIKQAEQLRRKAQLE-----ELKKEIAEEARK---AGIQSA-EKLAEKI 69 (223)
T ss_pred CCCCcCCccccc--ccccCCCCCceecCcchHHHHHHHHHHHHHHH-----HHHHHHHHHHHH---cCCchh-hHHHHhh
Confidence 599999999821 23455567999999999999999999987764 455566555543 233332 2344444
Q ss_pred hccCCCCCCCCccccccccccCCCCCCCCCcccchhhhhccccccceeeCCCCCCCCCCCCCCCC--CCCCCCHHHHHHH
Q 003362 520 ITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRPIEPPAEPAPPPP--QPLKLTKKEQKKL 597 (826)
Q Consensus 520 ~~k~~~~~~iP~VEWWD~~iL~~~~y~~i~~~~~~~~~i~~~~It~yVEHPvpi~pp~e~~~p~~--~plyLTKKEqKKl 597 (826)
+..+...++||+|||||.+||++++|++++++........+..||+||||||||++|.+...+.+ +||||||||||||
T Consensus 70 ~~~~~~~~~iPdiEWWD~~~l~~~~y~~~~~~~~~~~~~~~~~It~~VeHPv~i~~p~~~~~~~~~~~~~~LTkkErKKl 149 (223)
T PF08572_consen 70 PKRELPEDEIPDIEWWDRPILPDPSYDDLNDESDLEIDEEESSITNYVEHPVPIKPPYEKNKPPPVVPPVYLTKKERKKL 149 (223)
T ss_pred cccccccccCCCccccchhhcCCCCccccccccchhcccchhhhhhhhhCCCCCCCccccccccccccCcccChHHHHHH
Confidence 54444568999999999999999999988664211111245789999999999999999665554 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccchhhhhhhhhccccCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCH
Q 003362 598 RTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTP 671 (826)
Q Consensus 598 RRqrR~e~~KEkQdKIRLGL~PPPpPKVKLSNLMrVLg~eAV~DPTkvEa~VR~QmaeR~~~He~~N~eRKLT~ 671 (826)
|||+|+++++|+||||||||+|||+|||||||||+|||++||+|||+||++||+||++|+++|+++|++|||||
T Consensus 150 Rr~rR~e~~kEkq~kIrlGL~ppP~PKVKlSNLMrVL~~eAV~DPT~vE~~Vr~Q~eeR~~~He~~N~~RkLt~ 223 (223)
T PF08572_consen 150 RRQRRQEKQKEKQDKIRLGLEPPPPPKVKLSNLMRVLGNEAVQDPTKVEAKVRKQMEERQQKHEERNEERKLTP 223 (223)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHhhcchhcCcHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996
No 3
>PF06544 DUF1115: Protein of unknown function (DUF1115); InterPro: IPR010541 This entry represents the C terminus of several eukaryotic RWD domain-containing proteins of unknown function.
Probab=100.00 E-value=1.1e-40 Score=315.42 Aligned_cols=128 Identities=44% Similarity=0.755 Sum_probs=116.8
Q ss_pred EEEEEEccCCCCccccccccccccccceeEEEEcCCceEEEEecchHHHHHHHHHHhhhccCCccccCCCccccccCCCC
Q 003362 693 VSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKP 772 (826)
Q Consensus 693 ~aVyrI~~Lsnp~hrFKV~~NAqQl~LTG~~li~~~~nlVVVEGG~KsiKkYkkLMl~RIkW~E~~~~~~d~~de~~d~~ 772 (826)
|+||+|.+|+||+|||||+.||+||+|||||++++.+||||||||++||++|++|||+||+|+|+.......++......
T Consensus 1 ~~~~~I~~L~~p~~R~kI~~nA~ql~LtG~~~~g~~pgiIvvEG~~k~i~~y~~lmlrri~W~e~~~~~~~~~e~~~~~~ 80 (128)
T PF06544_consen 1 CYVHHIKSLSNPKKRFKIDKNAKQLHLTGFCLPGPKPGIIVVEGGEKSIKEYKKLMLRRIKWNEPKKITVREEEDEEDDS 80 (128)
T ss_pred CEEEEeCcccCHHHHHHHHHHHHHhCCeEEEEEcCCcEEEEEECCHHHHHHHHHHHhceecccccccccccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999887654332332223337
Q ss_pred CCeeEEEEeeecCCCCCCCceeEecCCHHHHHHHHHhcCchhHHHHHh
Q 003362 773 VNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAV 820 (826)
Q Consensus 773 ~N~C~LVWEG~vk~r~F~~w~~k~c~te~~Are~L~~~~~ehYWdlA~ 820 (826)
+|+|.|||||++..++|.+|+++.|.|+.+|+++|.++|++|||++|+
T Consensus 81 ~n~c~~vweg~~~~r~F~~~~~~~~~~~~~~~~~L~~~~~~~~~~~a~ 128 (128)
T PF06544_consen 81 DNSCSLVWEGTVKKRAFKGFREKECEDESEARKFLREHGLEHYFDLAL 128 (128)
T ss_pred CCceeEEEeccccccCCCCceEEeCCCHHHHHHHHHHCCCHHHHHhhC
Confidence 999999999999999999999999999999999999999999999985
No 4
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.40 E-value=9.2e-05 Score=83.83 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=11.4
Q ss_pred CccccccHHHHHHHHH
Q 003362 333 GLANITNIEAVKRAQE 348 (826)
Q Consensus 333 ~~~~~~~~ea~~r~~~ 348 (826)
+|....+.+.+..|-+
T Consensus 226 afVeF~~~e~A~~Al~ 241 (509)
T TIGR01642 226 AFLEFRTVEEATFAMA 241 (509)
T ss_pred EEEEeCCHHHHhhhhc
Confidence 4667777888877754
No 5
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.31 E-value=7.6e-05 Score=82.84 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=3.1
Q ss_pred hhhhhhhh
Q 003362 74 DRERDRDF 81 (826)
Q Consensus 74 ~R~rdRdr 81 (826)
+|.+++.|
T Consensus 334 SRt~~rs~ 341 (479)
T KOG4676|consen 334 SRTPPRSY 341 (479)
T ss_pred ccCCCccc
Confidence 33334433
No 6
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=96.98 E-value=0.00044 Score=78.39 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=14.3
Q ss_pred CCCCccchhhhhhhhhccccCCCChHHH
Q 003362 619 EPPKPKVKMSNLMKVLGSEATQDPTRLE 646 (826)
Q Consensus 619 PPPpPKVKLSNLMrVLg~eAV~DPTkvE 646 (826)
.+|...|.|.||. ..+.+.|...++
T Consensus 406 ~~~s~v~~l~N~~---~~~~l~~d~~~~ 430 (509)
T TIGR01642 406 GKPTKVVQLTNLV---TGDDLMDDEEYE 430 (509)
T ss_pred CCCceEEEeccCC---chhHhcCcchHH
Confidence 3466677888884 323344555554
No 7
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=94.94 E-value=0.022 Score=62.85 Aligned_cols=13 Identities=46% Similarity=1.048 Sum_probs=6.0
Q ss_pred hhhhhhhhhhccc
Q 003362 74 DRERDRDFKREKS 86 (826)
Q Consensus 74 ~R~rdRdr~Rer~ 86 (826)
.|.|++|++++|.
T Consensus 327 ~r~r~~Dy~~erg 339 (453)
T KOG2888|consen 327 GREREKDYERERG 339 (453)
T ss_pred cccccccCCcccC
Confidence 3444445555543
No 8
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=94.89 E-value=0.013 Score=59.44 Aligned_cols=12 Identities=50% Similarity=0.706 Sum_probs=7.9
Q ss_pred CCcCcCCccccC
Q 003362 1 MDKDKSSKRSHD 12 (826)
Q Consensus 1 ~d~~~ss~r~~~ 12 (826)
||-|+|+..-.+
T Consensus 1 mdadss~~~~rd 12 (182)
T PF06495_consen 1 MDADSSSRSHRD 12 (182)
T ss_pred CCcccccCCccc
Confidence 899988544333
No 9
>PF04940 BLUF: Sensors of blue-light using FAD; InterPro: IPR007024 An FAD-binding domain, BLUF, exemplified by the N terminus of the AppA protein, (Q53119 from SWISSPROT), from Rhodobacter sphaeroides, is present in various proteins, primarily from Bacteria. The BLUF domain is involved in sensing blue-light (and possibly redox) using FAD and is similar to the flavin-binding PAS domains and cryptochromes. The predicted secondary structure reveals that the BLUF domain is a novel FAD-binding fold [].; PDB: 2IYG_A 2IYI_B 1X0P_A 2HFN_G 3MZI_A 2HFO_E 3GFZ_A 3GG1_B 2KB2_A 3GFY_A ....
Probab=94.78 E-value=0.068 Score=49.11 Aligned_cols=66 Identities=20% Similarity=0.342 Sum_probs=52.8
Q ss_pred ccccccccceeEEEEcCCceEEEEecchHHHHHHHHHHhhhccCCccccCCCccccccCCCCCCeeEEEEeeecCCCCCC
Q 003362 711 DVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFN 790 (826)
Q Consensus 711 ~~NAqQl~LTG~~li~~~~nlVVVEGG~KsiKkYkkLMl~RIkW~E~~~~~~d~~de~~d~~~N~C~LVWEG~vk~r~F~ 790 (826)
..|-.++++||+.+++.+.-+=|+||.+.++... +.||.= |..-..|..+-.|++..|.|.
T Consensus 27 ~~~N~~~~iTG~Ll~~~~~F~Q~LEG~~~~v~~l----~~rI~~---------------D~RH~~v~~l~~~~i~~R~F~ 87 (93)
T PF04940_consen 27 RRNNRRHGITGFLLYDGGHFFQVLEGPEEAVDAL----FERIKQ---------------DPRHSNVVVLFRGPIEERRFP 87 (93)
T ss_dssp HHHHHHHTEEEEEEEETTEEEEEEEEEHHHHHHH----HHHHHT----------------TTEEEEEEEEEEEESS-SST
T ss_pred HHhhhhcCCEEEEEEeCCEEEEEEECCHHHHHHH----HHHHhc---------------CCCcCCeEEEEeeecCCccCC
Confidence 3466789999999999999999999999999873 344532 233457999999999999999
Q ss_pred CceeE
Q 003362 791 RFFVH 795 (826)
Q Consensus 791 ~w~~k 795 (826)
.|.|.
T Consensus 88 ~W~M~ 92 (93)
T PF04940_consen 88 DWSMG 92 (93)
T ss_dssp SCSSE
T ss_pred CCcCC
Confidence 99986
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=94.56 E-value=0.016 Score=65.08 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=9.2
Q ss_pred ceeEecCCHHHHHHHHHh
Q 003362 792 FFVHECMTEAAAKKVFAD 809 (826)
Q Consensus 792 w~~k~c~te~~Are~L~~ 809 (826)
+-|..|.+...|...++.
T Consensus 412 ~~fV~F~~~e~A~~A~~~ 429 (457)
T TIGR01622 412 KIYLKFSSVDAALAAFQA 429 (457)
T ss_pred eEEEEECCHHHHHHHHHH
Confidence 344455555555555544
No 11
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=93.92 E-value=0.03 Score=65.34 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=8.6
Q ss_pred hhhhhhhhccccCCCCh
Q 003362 627 MSNLMKVLGSEATQDPT 643 (826)
Q Consensus 627 LSNLMrVLg~eAV~DPT 643 (826)
+.-||.+|..=-+.||.
T Consensus 719 ~~~~rdLLdkml~LdP~ 735 (752)
T KOG0670|consen 719 VQQLRDLLDKMLILDPE 735 (752)
T ss_pred HHHHHHHHHHHhccChh
Confidence 34455555544555553
No 12
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.69 E-value=0.054 Score=63.95 Aligned_cols=11 Identities=9% Similarity=-0.164 Sum_probs=5.2
Q ss_pred CCCCCCCCCCC
Q 003362 184 TNAGGSANSNG 194 (826)
Q Consensus 184 ~~~~~~~~~n~ 194 (826)
.-.+.++++|.
T Consensus 843 ~~~~~~~~q~~ 853 (878)
T KOG1847|consen 843 PGDNIPYLQNE 853 (878)
T ss_pred cccCccccccc
Confidence 33444455555
No 13
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=91.50 E-value=0.12 Score=60.16 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=9.3
Q ss_pred CCCccchhhhhh
Q 003362 620 PPKPKVKMSNLM 631 (826)
Q Consensus 620 PPpPKVKLSNLM 631 (826)
+|.+-+.||||-
T Consensus 441 i~t~C~lL~nMF 452 (549)
T KOG0147|consen 441 IPTQCLLLSNMF 452 (549)
T ss_pred CccHHHHHhhcC
Confidence 577788888885
No 14
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=91.40 E-value=0.11 Score=60.63 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=7.6
Q ss_pred CccccccHHHHHHHHH
Q 003362 333 GLANITNIEAVKRAQE 348 (826)
Q Consensus 333 ~~~~~~~~ea~~r~~~ 348 (826)
||-.+.|.+.+++|.+
T Consensus 323 Gfi~f~~~~~ar~a~e 338 (549)
T KOG0147|consen 323 GFITFVNKEDARKALE 338 (549)
T ss_pred ceEEEecHHHHHHHHH
Confidence 3444445555555543
No 15
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=90.12 E-value=0.2 Score=58.77 Aligned_cols=13 Identities=46% Similarity=0.805 Sum_probs=5.0
Q ss_pred hhhhhhccccchh
Q 003362 88 EERDSRRDRDRSR 100 (826)
Q Consensus 88 R~rdr~r~r~r~r 100 (826)
++|||+++...++
T Consensus 186 rdrdrrrd~~~~~ 198 (752)
T KOG0670|consen 186 RDRDRRRDSQPDR 198 (752)
T ss_pred cChhhccccCCch
Confidence 3344443333333
No 16
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.04 E-value=0.29 Score=54.91 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=9.4
Q ss_pred CchhhHhhhhhccchhhhh
Q 003362 112 DVASEVKKKRKARDESEER 130 (826)
Q Consensus 112 d~~~~~~~~rk~r~~~~dr 130 (826)
|.||+.+.+.++|-...+|
T Consensus 449 d~hyS~~~~~e~rr~~~dR 467 (479)
T KOG0415|consen 449 DDHYSHRDKSEERRERYDR 467 (479)
T ss_pred cccchhcccchhhcccchh
Confidence 3445555555555444444
No 17
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.87 E-value=0.55 Score=52.76 Aligned_cols=8 Identities=38% Similarity=0.709 Sum_probs=3.1
Q ss_pred CCCCCchh
Q 003362 43 HKSSRRDE 50 (826)
Q Consensus 43 ~~~~r~~~ 50 (826)
|+++-+++
T Consensus 390 q~~~erdd 397 (479)
T KOG0415|consen 390 QHSDERDD 397 (479)
T ss_pred ccchhhhh
Confidence 33333444
No 18
>PRK14432 acylphosphatase; Provisional
Probab=80.05 E-value=3.6 Score=38.06 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=35.7
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEe-cchHHHHHHHHHHhh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVE-GGSKSIKRYGKLMLR 750 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVE-GG~KsiKkYkkLMl~ 750 (826)
-|+-|..-|++++|+|.|. +.++-=.|+|+ |.+.++..|..++..
T Consensus 17 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~~~v~~f~~~l~~ 63 (93)
T PRK14432 17 FRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTKEQMKKFEKLLKN 63 (93)
T ss_pred ehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHh
Confidence 3666778899999999885 55664467777 999999999887765
No 19
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=79.77 E-value=1.3 Score=54.17 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=23.5
Q ss_pred hhhhhhhhccccCCCChHHH----HHHHHHHHHHHHHH--HHHHHhccCCHHHHHH
Q 003362 627 MSNLMKVLGSEATQDPTRLE----KEIRSAAAEREQAH--IDRNIARKLTPAERRE 676 (826)
Q Consensus 627 LSNLMrVLg~eAV~DPTkvE----a~VR~QmaeR~~~H--e~~N~eRKLT~EqRre 676 (826)
++||.-.+..+++- .-.| +.-+.||.+++.+- -+.--.||++.++...
T Consensus 906 d~nl~~Y~~~~~~E--~~~e~~~f~~s~~em~k~~~k~~I~r~~n~R~~~d~e~~~ 959 (1194)
T KOG4246|consen 906 DDNLLDYTDKDLDE--SSFEISLFAESLYEMLKYQMKVKIVRQRNQRKRHDEELSV 959 (1194)
T ss_pred cccccccCchhhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhh
Confidence 56666555544321 1111 22345666655422 2223368888887643
No 20
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=78.56 E-value=0.93 Score=53.07 Aligned_cols=10 Identities=30% Similarity=0.218 Sum_probs=6.1
Q ss_pred CCCCCCcccc
Q 003362 215 GDPPFPTKVS 224 (826)
Q Consensus 215 ~~~~~p~kvs 224 (826)
++|+||-|+.
T Consensus 508 h~~~Pplkry 517 (653)
T KOG2548|consen 508 HGPGPPLKRY 517 (653)
T ss_pred CCCCCCcccc
Confidence 4456666665
No 21
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=77.60 E-value=1.3 Score=54.31 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=4.9
Q ss_pred CCCCCCCCC
Q 003362 438 PNVNPHFDP 446 (826)
Q Consensus 438 ~~~npyfD~ 446 (826)
.+.|+-.||
T Consensus 702 ~E~~~t~~~ 710 (1194)
T KOG4246|consen 702 AETGDTSDP 710 (1194)
T ss_pred cccCCCccc
Confidence 345555555
No 22
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=74.88 E-value=1.8 Score=50.89 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=3.8
Q ss_pred CCCCCCC
Q 003362 443 HFDPRMG 449 (826)
Q Consensus 443 yfD~r~~ 449 (826)
|.||.++
T Consensus 338 y~dpsvt 344 (500)
T KOG0120|consen 338 YCDPSVT 344 (500)
T ss_pred eeCCcch
Confidence 4466554
No 23
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=74.05 E-value=2.2 Score=50.23 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=16.2
Q ss_pred hhhhccccchhhhhhhcccCCCCchhhHhhh
Q 003362 90 RDSRRDRDRSREVKREEFDDGDDVASEVKKK 120 (826)
Q Consensus 90 rdr~r~r~r~r~~~rd~~dr~~d~~~~~~~~ 120 (826)
...++..+++||+++.+..+..+++.+..+.
T Consensus 465 ~~~rk~~d~~REr~~rr~~~~~~~d~~~~~r 495 (538)
T KOG1049|consen 465 ETSRKKVDRDREREHRRKESSVDKDRHREHR 495 (538)
T ss_pred cccccccchhhHHHHHHhhhccchhhcchhh
Confidence 3444455555666555555555555553333
No 24
>PRK14421 acylphosphatase; Provisional
Probab=69.22 E-value=5 Score=37.74 Aligned_cols=45 Identities=18% Similarity=0.083 Sum_probs=37.0
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
-|+=|...|.+|+|+|.|. +.++-=.|+|+|.+.++..|...+.+
T Consensus 19 FR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (99)
T PRK14421 19 YRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCRR 64 (99)
T ss_pred chHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHHh
Confidence 5677888999999999885 55564578899999999999887753
No 25
>PRK14420 acylphosphatase; Provisional
Probab=68.34 E-value=5.4 Score=36.41 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=37.5
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
-|+-|-..|.+++|+|.|- +.++-=.|+++|.+.++..|...+..
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (91)
T PRK14420 17 FRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEK 62 (91)
T ss_pred ChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 4677788899999999985 45554689999999999999988876
No 26
>PRK14436 acylphosphatase; Provisional
Probab=68.01 E-value=5.3 Score=36.76 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=37.8
Q ss_pred ccccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 705 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 705 ~hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
-.|+-|..-|.+++|+|.|. +.++-=-|+++|.+.++..|..++..
T Consensus 18 GFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14436 18 GFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQ 64 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHhh
Confidence 35777888999999999885 56664578889999999999998764
No 27
>PRK14452 acylphosphatase; Provisional
Probab=67.62 E-value=5.4 Score=38.03 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=38.7
Q ss_pred CccccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 704 PKTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 704 p~hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
=--||-|...|.+|+|+|-|. +.++-=.|+++|.+.++..|..|+.+
T Consensus 33 VGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l~~ 80 (107)
T PRK14452 33 VGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWCER 80 (107)
T ss_pred cChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhc
Confidence 446888999999999999885 55564578889999999999777765
No 28
>PRK14424 acylphosphatase; Provisional
Probab=67.11 E-value=5.7 Score=36.96 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=38.2
Q ss_pred ccccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHh
Q 003362 705 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 749 (826)
Q Consensus 705 ~hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl 749 (826)
-.|+-|...|.+++|+|.|- +.++-=.|+|+|.+.++..|...+.
T Consensus 21 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~ 66 (94)
T PRK14424 21 GFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLR 66 (94)
T ss_pred chHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 46788889999999999885 5556568999999999999998884
No 29
>PRK14441 acylphosphatase; Provisional
Probab=66.35 E-value=6.3 Score=36.41 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=36.2
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 749 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl 749 (826)
-|+-|...|.+|+|+|.|- +.++-=.|+++|.+.++..|..++.
T Consensus 20 FR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 64 (93)
T PRK14441 20 FRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCH 64 (93)
T ss_pred chHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 4677888999999999875 5556457889999999999888874
No 30
>PRK14430 acylphosphatase; Provisional
Probab=66.08 E-value=6.1 Score=36.49 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=36.7
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHH
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLM 748 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLM 748 (826)
.|+-+...|++|+|+|.|. +.++-=-|+++|.+.++..|..++
T Consensus 19 FR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 19 YRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred eHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 5788889999999999885 556656799999999999988877
No 31
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=65.90 E-value=6.1 Score=35.74 Aligned_cols=49 Identities=20% Similarity=0.178 Sum_probs=38.9
Q ss_pred CCccccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhhh
Q 003362 703 HPKTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLRR 751 (826)
Q Consensus 703 np~hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~R 751 (826)
-=-.|+-|..-|.+|+|+|.|- +.++--.|+|+|.+..+..|...|..-
T Consensus 16 GVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~g 65 (91)
T PF00708_consen 16 GVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKKG 65 (91)
T ss_dssp SSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHHS
T ss_pred cCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHhC
Confidence 3345777888899999999885 566657899999999999999988873
No 32
>PRK14427 acylphosphatase; Provisional
Probab=65.11 E-value=6.7 Score=36.33 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=38.0
Q ss_pred ccccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 705 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 705 ~hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
-.||=|...|.+|+|+|.|. +.++-=.|+|+|.+.++..|...+..
T Consensus 20 GFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~ 66 (94)
T PRK14427 20 GFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNS 66 (94)
T ss_pred CChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhh
Confidence 35778888999999999885 55564578899999999999888875
No 33
>PRK14445 acylphosphatase; Provisional
Probab=64.85 E-value=7.5 Score=35.67 Aligned_cols=44 Identities=25% Similarity=0.237 Sum_probs=36.7
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 749 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl 749 (826)
.|+-|..-|.+++|+|.|- +.++-=.|+++|.+.++..|...+.
T Consensus 19 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~ 63 (91)
T PRK14445 19 FRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAE 63 (91)
T ss_pred ChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 5777888999999999885 5566457889999999999988884
No 34
>PRK14449 acylphosphatase; Provisional
Probab=64.13 E-value=7 Score=35.78 Aligned_cols=45 Identities=29% Similarity=0.359 Sum_probs=37.8
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
-|+-|...|.+|+|+|.|- +.++-=.|+++|.+.++..|.+.+..
T Consensus 18 FR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14449 18 LRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKT 63 (90)
T ss_pred hHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 4677888999999999875 55665689999999999999988865
No 35
>PRK14435 acylphosphatase; Provisional
Probab=63.42 E-value=7 Score=35.88 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=36.9
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
-|+-|...|.+++|+|.|- +.++-=-|+|+|.+..+..|.+.+.+
T Consensus 17 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 62 (90)
T PRK14435 17 FRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVAK 62 (90)
T ss_pred ChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 4777888999999999886 44554678899999999999888743
No 36
>PRK14429 acylphosphatase; Provisional
Probab=63.30 E-value=7.5 Score=35.58 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=37.7
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhhh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLRR 751 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~R 751 (826)
-|+-|..-|++|+|+|.|. +.++-=.|+++|.+.++..|...+..-
T Consensus 17 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~g 63 (90)
T PRK14429 17 CRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEVG 63 (90)
T ss_pred eHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhhC
Confidence 3667778899999999885 555645789999999999999988753
No 37
>PRK14440 acylphosphatase; Provisional
Probab=62.59 E-value=7.9 Score=35.60 Aligned_cols=44 Identities=23% Similarity=0.230 Sum_probs=35.7
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 749 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl 749 (826)
-|+-|...|.+++|+|.|- +.++-=-|+++|.+.++..|...+.
T Consensus 18 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 62 (90)
T PRK14440 18 FRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIK 62 (90)
T ss_pred chHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 5777888999999999874 5555457889999999999887765
No 38
>PRK14448 acylphosphatase; Provisional
Probab=62.51 E-value=7.5 Score=35.69 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=36.8
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 749 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl 749 (826)
.|+-|...|.+|+|+|.|. +.++-=.|+++|.+.++..|...+.
T Consensus 17 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 61 (90)
T PRK14448 17 FRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQ 61 (90)
T ss_pred hHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 4677888999999999885 5555457899999999999988884
No 39
>PRK14426 acylphosphatase; Provisional
Probab=62.18 E-value=7.7 Score=35.70 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=37.6
Q ss_pred ccccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 705 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 705 ~hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
-.|+-|..-|.+++|+|.|. +.++-=-|+++|.+..+..|.+.+..
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (92)
T PRK14426 18 GFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKE 64 (92)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhc
Confidence 45778888999999999885 45554578899999999999988843
No 40
>PRK14437 acylphosphatase; Provisional
Probab=61.75 E-value=7.7 Score=37.09 Aligned_cols=48 Identities=25% Similarity=0.171 Sum_probs=38.9
Q ss_pred CCCccccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHh
Q 003362 702 SHPKTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 749 (826)
Q Consensus 702 snp~hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl 749 (826)
.-=-.|+=|...|++++|+|.|. +.++-=.|+|+|.+.++..|..++.
T Consensus 34 QGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~ 82 (109)
T PRK14437 34 QGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 82 (109)
T ss_pred CCcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 33456888899999999999885 5666468888999999999888773
No 41
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=61.02 E-value=4.3 Score=51.10 Aligned_cols=6 Identities=33% Similarity=0.218 Sum_probs=2.6
Q ss_pred hhHHHH
Q 003362 470 KWSKEA 475 (826)
Q Consensus 470 k~~kqA 475 (826)
||.+.-
T Consensus 599 Kf~kL~ 604 (997)
T KOG0334|consen 599 KFLKLL 604 (997)
T ss_pred HHHHHH
Confidence 444433
No 42
>PRK14433 acylphosphatase; Provisional
Probab=60.75 E-value=9 Score=35.00 Aligned_cols=45 Identities=31% Similarity=0.360 Sum_probs=36.3
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
.|+=|-..|.+++|+|.|. +.++-=-|+|+|.+.++..|...+.+
T Consensus 16 FR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 61 (87)
T PRK14433 16 YRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLRR 61 (87)
T ss_pred chHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 4666778899999999874 55664578899999999999888843
No 43
>PRK14442 acylphosphatase; Provisional
Probab=60.31 E-value=9.7 Score=35.04 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=36.6
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 749 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl 749 (826)
-|+=+..-|.+|+|+|-|- +.++-=.|+++|.+.++..|..++.
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (91)
T PRK14442 19 FRQATREEADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLG 63 (91)
T ss_pred ccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 4667778899999999874 6666457888999999999988884
No 44
>PRK14422 acylphosphatase; Provisional
Probab=59.28 E-value=10 Score=35.09 Aligned_cols=46 Identities=28% Similarity=0.304 Sum_probs=38.2
Q ss_pred ccccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 705 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 705 ~hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
-.|+=|..-|.+|+|+|.|- +.++-=-|+|+|.+.++..|...+..
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 20 GFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 45777888999999999884 66664578899999999999988865
No 45
>PRK14423 acylphosphatase; Provisional
Probab=58.62 E-value=10 Score=34.98 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=37.4
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhhhc
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLRRI 752 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~RI 752 (826)
.|+=|...|++|+|+|.|- +.++-=.|+++|.+.++..|..++...-
T Consensus 20 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~gp 67 (92)
T PRK14423 20 YRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCHEGS 67 (92)
T ss_pred ehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHhCC
Confidence 4667788899999999885 5566447889999999999888876533
No 46
>PRK14438 acylphosphatase; Provisional
Probab=58.55 E-value=10 Score=34.91 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=35.4
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 749 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl 749 (826)
-|+=+...|.+++|+|.|- +.++-=.|+++|.+.++..|...+.
T Consensus 18 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (91)
T PRK14438 18 FRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCH 62 (91)
T ss_pred ccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 4566778899999999885 5556457899999999999877773
No 47
>PRK14451 acylphosphatase; Provisional
Probab=57.33 E-value=11 Score=34.62 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=37.4
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
.|+-+...|.+++|+|-|- +.++-=-|+++|.+.++..|..++.+
T Consensus 18 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (89)
T PRK14451 18 FRASAKKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQK 63 (89)
T ss_pred chHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 5777888999999999885 66665578889999999999888864
No 48
>KOG1874 consensus KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4 [Transcription]
Probab=56.92 E-value=24 Score=45.69 Aligned_cols=18 Identities=33% Similarity=0.267 Sum_probs=10.6
Q ss_pred cceeeccccccCCCCCCC
Q 003362 234 GVSITRSHEVHGKSSTDG 251 (826)
Q Consensus 234 g~~~~r~~~~~g~~~~d~ 251 (826)
|-.+-|+.+.++++-.|+
T Consensus 1344 ~k~r~rs~E~~s~d~~D~ 1361 (1477)
T KOG1874|consen 1344 GKGRERSLEPISKDELDE 1361 (1477)
T ss_pred ccchhhcccCCCccchhh
Confidence 445556666666665554
No 49
>PRK14443 acylphosphatase; Provisional
Probab=56.87 E-value=12 Score=34.86 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=37.7
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
-|+-+...|.+++|+|.|. +.++-=.|+++|.+..+..|...|..
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (93)
T PRK14443 19 FRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK 64 (93)
T ss_pred CcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 4677888999999999875 66775678889999999999988855
No 50
>PRK14446 acylphosphatase; Provisional
Probab=55.01 E-value=14 Score=34.11 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=35.6
Q ss_pred ccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 707 RFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 707 rFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
|+=|-..|++|+|||-|. ..++-=.|+++|.+.++..|-.++.+
T Consensus 18 R~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~~ 62 (88)
T PRK14446 18 RASTRERAVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLWQ 62 (88)
T ss_pred hHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHhh
Confidence 566777899999999885 56664688899999999988887754
No 51
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=53.87 E-value=60 Score=33.61 Aligned_cols=76 Identities=21% Similarity=0.351 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhhhhhhccccCCCChHHHHHHHHHHHHHHHHHHHH
Q 003362 584 PQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDR 663 (826)
Q Consensus 584 ~~plyLTKKEqKKlRRqrR~e~~KEkQdKIRLGL~PPPpPKVKLSNLMrVLg~eAV~DPTkvEa~VR~QmaeR~~~He~~ 663 (826)
...|-||...|..||-..+..+.. .| +..---..-|-.++..+.+ =|+.||.|+++-.+++.++
T Consensus 46 F~gLdLTdaQRqQmRdLm~~~r~~----------~~-~~~~~er~amh~LI~ad~F-----DEaavra~a~kma~~~~e~ 109 (166)
T PRK10363 46 FDGISLTEHQRQQMRDLMQQARHE----------QP-PVNVSEMETMHRLVTAENF-----DENAVRAQAEKMAQEQVAR 109 (166)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhc----------cc-ccCHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHHH
Confidence 467999988888888766444421 11 1121123334455555544 3666676666666666665
Q ss_pred HHhc---------cCCHHHHH
Q 003362 664 NIAR---------KLTPAERR 675 (826)
Q Consensus 664 N~eR---------KLT~EqRr 675 (826)
-.++ =|||||+.
T Consensus 110 ~Vem~k~~nqmy~lLTPEQKa 130 (166)
T PRK10363 110 QVEMAKVRNQMYRLLTPEQQA 130 (166)
T ss_pred HHHHHHHHHHHHHhCCHHHHH
Confidence 5544 49999994
No 52
>PRK14425 acylphosphatase; Provisional
Probab=53.12 E-value=14 Score=34.30 Aligned_cols=45 Identities=18% Similarity=0.092 Sum_probs=37.1
Q ss_pred ccccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHh
Q 003362 705 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 749 (826)
Q Consensus 705 ~hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl 749 (826)
--||-|...|++++|+|.|. +.++-=-|+++|.+.++..|...+.
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~ 65 (94)
T PRK14425 20 GFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFR 65 (94)
T ss_pred cchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 35778888999999999885 6666557889999999998888774
No 53
>PRK14450 acylphosphatase; Provisional
Probab=52.87 E-value=14 Score=33.86 Aligned_cols=44 Identities=27% Similarity=0.264 Sum_probs=35.0
Q ss_pred cccccccccccccceeEEE-EcCCc-eEEEEecchHHHHHHHHHHh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGI-NVVVVEGGSKSIKRYGKLML 749 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~-nlVVVEGG~KsiKkYkkLMl 749 (826)
.|+-|...|.+++|+|.|. +.++- =-|+++|.+.++..|...+.
T Consensus 17 FR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~ 62 (91)
T PRK14450 17 FRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR 62 (91)
T ss_pred cHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 4677788899999999874 55662 35679999999999888773
No 54
>PRK14444 acylphosphatase; Provisional
Probab=51.58 E-value=16 Score=33.66 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=37.0
Q ss_pred cccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
.|+=|..-|++|+|+|-|- +.++-=-|+++|.+..+..|...+.+
T Consensus 19 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14444 19 FRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCYS 64 (92)
T ss_pred cHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 4666778899999999874 66665589999999999999988664
No 55
>PRK14439 acylphosphatase; Provisional
Probab=50.53 E-value=16 Score=37.57 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=38.5
Q ss_pred ccccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHhh
Q 003362 705 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 705 ~hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
-.|+-|...|.|++|+|.|- +.++-=.|+++|.+.+|..|...+..
T Consensus 89 GFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~ 135 (163)
T PRK14439 89 GFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKS 135 (163)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 35777888999999999874 66664578899999999999998875
No 56
>PRK14431 acylphosphatase; Provisional
Probab=50.36 E-value=21 Score=32.82 Aligned_cols=44 Identities=11% Similarity=0.218 Sum_probs=35.2
Q ss_pred ccccccccccccceeEEEEcCCceEEEEecchHHHHHHHHHHhh
Q 003362 707 RFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 707 rFKV~~NAqQl~LTG~~li~~~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
||=+..-|++++|+|-|.=.++-=.|+++|.+.++..|...+.+
T Consensus 18 R~~~~~~A~~~gl~G~V~N~~dgVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 18 RYFTQRIAMNYNIVGTVQNVDDYVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred hHHHHHHHhhcCCEEEEEECCCcEEEEEEcCHHHHHHHHHHHhc
Confidence 56667789999999988533433578999999999999888865
No 57
>PRK14434 acylphosphatase; Provisional
Probab=49.45 E-value=17 Score=33.65 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=35.2
Q ss_pred ccccccccccccc-ceeEEE-EcCCceEEEEecch-HHHHHHHHHHhh
Q 003362 706 TRFKVDVNAHENR-LTGCAV-ICEGINVVVVEGGS-KSIKRYGKLMLR 750 (826)
Q Consensus 706 hrFKV~~NAqQl~-LTG~~l-i~~~~nlVVVEGG~-KsiKkYkkLMl~ 750 (826)
-|+-|-..|++|+ |+|.|. +.++-=.|+++|.+ .++..|-..+..
T Consensus 17 FR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 17 FRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred EhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 3667778899999 999885 55564578889987 699988887754
No 58
>PRK14428 acylphosphatase; Provisional
Probab=49.13 E-value=18 Score=34.02 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=36.8
Q ss_pred ccccccccccccccceeEEE-EcCCceEEEEecchHHHHHHHHHHh
Q 003362 705 KTRFKVDVNAHENRLTGCAV-ICEGINVVVVEGGSKSIKRYGKLML 749 (826)
Q Consensus 705 ~hrFKV~~NAqQl~LTG~~l-i~~~~nlVVVEGG~KsiKkYkkLMl 749 (826)
=-|+-|-.-|++|+|+|.|. +.++-=.|+|+|.+.++..|-..+.
T Consensus 22 GFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~ 67 (97)
T PRK14428 22 GFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLA 67 (97)
T ss_pred cchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHh
Confidence 45777888899999999885 5566568889999999998877775
No 59
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=48.66 E-value=18 Score=33.70 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=39.9
Q ss_pred CCCCccccccccccccccceeEEEEcC-CceEEEEecchHHHHHHHHHHh
Q 003362 701 LSHPKTRFKVDVNAHENRLTGCAVICE-GINVVVVEGGSKSIKRYGKLML 749 (826)
Q Consensus 701 Lsnp~hrFKV~~NAqQl~LTG~~li~~-~~nlVVVEGG~KsiKkYkkLMl 749 (826)
.+-=-.||-+..=|..|+|+|.+--.+ +-=-||++|-..++.+|..++-
T Consensus 14 VQGVGFR~~~~~~A~~lgl~G~V~N~~DGsVeiva~G~~~~v~~~~~~l~ 63 (92)
T COG1254 14 VQGVGFRYFTRSEALRLGLTGWVKNLDDGSVEIVAEGPDEAVEKFIEWLR 63 (92)
T ss_pred eccccHHHHHHHHHHHCCCEEEEEECCCCeEEEEEEcCHHHHHHHHHHHH
Confidence 344456788888899999999996554 5567999999999999988887
No 60
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=48.04 E-value=8.2 Score=47.48 Aligned_cols=9 Identities=22% Similarity=0.102 Sum_probs=4.4
Q ss_pred CCCceEecC
Q 003362 384 KAPVLRVDA 392 (826)
Q Consensus 384 k~~~L~LD~ 392 (826)
-|||=+||-
T Consensus 710 ~PPPP~~~~ 718 (894)
T KOG0132|consen 710 IPPPPFFDR 718 (894)
T ss_pred CCCCccccC
Confidence 345444554
No 61
>PRK14447 acylphosphatase; Provisional
Probab=47.81 E-value=22 Score=32.94 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=35.4
Q ss_pred cccccccccccccceeEEE-EcCC-ceEEEEecchHHHHHHHHHHh
Q 003362 706 TRFKVDVNAHENRLTGCAV-ICEG-INVVVVEGGSKSIKRYGKLML 749 (826)
Q Consensus 706 hrFKV~~NAqQl~LTG~~l-i~~~-~nlVVVEGG~KsiKkYkkLMl 749 (826)
.|+=+...|++|+|+|.|- +.++ -=-|+++|.+.++..|-.++.
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~ 64 (95)
T PRK14447 19 FRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWAR 64 (95)
T ss_pred chHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 4677788899999999885 5555 246778999999999988765
No 62
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.63 E-value=12 Score=42.41 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=7.7
Q ss_pred hhhhhcccCcccc
Q 003362 143 REKKRKFEDNFVK 155 (826)
Q Consensus 143 ~~~~r~f~d~~~~ 155 (826)
.+.||+|.-+.+.
T Consensus 140 ~R~rRr~qr~rig 152 (426)
T KOG2812|consen 140 RRQRRRSQRVRIG 152 (426)
T ss_pred HHHHHHHHHhhhh
Confidence 4466777666553
No 63
>PRK10455 periplasmic protein; Reviewed
Probab=46.74 E-value=91 Score=31.81 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 003362 585 QPLKLTKKEQKKLRTQRRLARE 606 (826)
Q Consensus 585 ~plyLTKKEqKKlRRqrR~e~~ 606 (826)
..|-||...+.+||...+....
T Consensus 53 ~~L~LT~~Qrqqir~im~~~r~ 74 (161)
T PRK10455 53 KGLNLTDAQKQQIRDIMKAQRD 74 (161)
T ss_pred hhCCCCHHHHHHHHHHHHHHHH
Confidence 4589999999999976655443
No 64
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=45.36 E-value=10 Score=39.30 Aligned_cols=6 Identities=17% Similarity=0.008 Sum_probs=3.5
Q ss_pred ccCccc
Q 003362 149 FEDNFV 154 (826)
Q Consensus 149 f~d~~~ 154 (826)
++|+-.
T Consensus 118 yv~VPp 123 (182)
T PF06495_consen 118 YVDVPP 123 (182)
T ss_pred eccCCC
Confidence 666555
No 65
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=43.36 E-value=17 Score=39.62 Aligned_cols=10 Identities=40% Similarity=0.614 Sum_probs=5.2
Q ss_pred ccccCCccee
Q 003362 228 TTNENKGVSI 237 (826)
Q Consensus 228 ~t~en~g~~~ 237 (826)
.||--.||.|
T Consensus 150 ~tn~~~gv~v 159 (293)
T KOG1882|consen 150 DTNRFRGVVV 159 (293)
T ss_pred hhcceeeEEE
Confidence 3454555555
No 66
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=42.47 E-value=1.2e+02 Score=31.08 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccc-hhhhhhhhhccccCCCChHHHHHHHHHHHHHHHHH--
Q 003362 584 PQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKV-KMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAH-- 660 (826)
Q Consensus 584 ~~plyLTKKEqKKlRRqrR~e~~KEkQdKIRLGL~PPPpPKV-KLSNLMrVLg~eAV~DPTkvEa~VR~QmaeR~~~H-- 660 (826)
...+-||...|..||...+...... | .+-+ -..-|-.+|..+. =||.+|.+.+.++.+.....+
T Consensus 52 f~~l~LTd~QR~qmr~im~~~r~~~----------~--~~~~~~~~~m~~Li~Ad~-FDeaAvra~~~kma~~~~e~~v~ 118 (162)
T PRK12751 52 FDGINLTEQQRQQMRDLMRQSHQSQ----------P--RLDLEDREAMHKLITADK-FDEAAVRAQAEKMSQNQIERHVE 118 (162)
T ss_pred hccCCCCHHHHHHHHHHHHHhhhcc----------c--chhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999998776655431 1 1111 1222345555555 599999988776655554332
Q ss_pred --HHHHHh-ccCCHHHHH
Q 003362 661 --IDRNIA-RKLTPAERR 675 (826)
Q Consensus 661 --e~~N~e-RKLT~EqRr 675 (826)
+..|+- .-||||||.
T Consensus 119 ~~~~~~qmy~lLTPEQra 136 (162)
T PRK12751 119 MAKVRNQMYNLLTPEQKE 136 (162)
T ss_pred HHHHHHHHHHcCCHHHHH
Confidence 333432 359999994
No 67
>KOG2217 consensus U4/U6.U5 snRNP associated protein [RNA processing and modification]
Probab=39.01 E-value=13 Score=45.28 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=11.0
Q ss_pred ceeeccCChhHHHHH
Q 003362 462 TFQFVEEGKWSKEAE 476 (826)
Q Consensus 462 ~f~F~ekGk~~kqAe 476 (826)
.|.|...|.|...++
T Consensus 280 ~~~l~~~g~id~e~e 294 (705)
T KOG2217|consen 280 QFRLTTHGTIDGERE 294 (705)
T ss_pred ceeeecccccchhhH
Confidence 577888888777655
No 68
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=35.83 E-value=2.3e+02 Score=25.36 Aligned_cols=79 Identities=24% Similarity=0.283 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH--HHHHHcCCCCCCCccchhhhhhhhhccccCCCChHHHHHHHHHHHHH----HHH
Q 003362 586 PLKLTKKEQKKLRTQRRLAREKDR--QEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAER----EQA 659 (826)
Q Consensus 586 plyLTKKEqKKlRRqrR~e~~KEk--QdKIRLGL~PPPpPKVKLSNLMrVLg~eAV~DPTkvEa~VR~QmaeR----~~~ 659 (826)
.+-||...+.+++........+-. +..|+ .+..-|..+|..+ --||-+|++.+.+-.+.+ ...
T Consensus 39 ~l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~----------~~r~~l~~ll~~~-~~D~~~i~a~~~~~~~~~~~l~~~~ 107 (125)
T PF13801_consen 39 MLNLTPEQQAKLRALMDEFRQEMRALRQELR----------AARQELRALLAAP-PPDEAAIEALLEEIREAQAELRQER 107 (125)
T ss_dssp HS-TTHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHCCS-SS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999976554433222 22222 2333455555544 457778877665543332 223
Q ss_pred HHHHHHhc-cCCHHHHH
Q 003362 660 HIDRNIAR-KLTPAERR 675 (826)
Q Consensus 660 He~~N~eR-KLT~EqRr 675 (826)
+....+.+ -||||||.
T Consensus 108 ~~~~~~~~~~LtpeQR~ 124 (125)
T PF13801_consen 108 LEHLLEIRAVLTPEQRA 124 (125)
T ss_dssp HHHHHHHHHTT-GGGHH
T ss_pred HHHHHHHHHcCCHHHhC
Confidence 33334444 49999985
No 69
>KOG3360 consensus Acylphosphatase [Energy production and conversion]
Probab=30.28 E-value=71 Score=30.49 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=47.3
Q ss_pred cccccccceeEEEEcC-CceEEEEecchHHHHHHHHHHhhhccCCccccCCCccccccCCCCCCeeEEEEeeecCCCCCC
Q 003362 712 VNAHENRLTGCAVICE-GINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFN 790 (826)
Q Consensus 712 ~NAqQl~LTG~~li~~-~~nlVVVEGG~KsiKkYkkLMl~RIkW~E~~~~~~d~~de~~d~~~N~C~LVWEG~vk~r~F~ 790 (826)
.+|++|+|+|-|.=.. +---=-+||-+..+..++.|++.+=.=.. .-..|+.-=++++.+-.|.
T Consensus 29 ~~a~~lGlrGWv~Nt~~GtvkG~leGp~~~vd~mk~wl~~~gsP~s---------------~I~~~ef~n~kei~~~~y~ 93 (98)
T KOG3360|consen 29 DEAKKLGLRGWVMNTSEGTVKGQLEGPPEKVDEMKEWLLTRGSPVS---------------AIDRAEFSNQKEISRYTYK 93 (98)
T ss_pred HHHHhhcceEEEEecCCceEEEEEeCCHHHHHHHHHHHHhcCChhH---------------heeeeeecccceecccccc
Confidence 4899999999996544 44445689999999999999997422211 1224555555667777777
Q ss_pred Ccee
Q 003362 791 RFFV 794 (826)
Q Consensus 791 ~w~~ 794 (826)
.|.+
T Consensus 94 ~F~I 97 (98)
T KOG3360|consen 94 DFSI 97 (98)
T ss_pred eeee
Confidence 7754
No 70
>PF08690 GET2: GET complex subunit GET2; InterPro: IPR014802 This family corresponds to the GET complex subunit GET2. The GET complex is involved in the retrieval of ER resident proteins from the Golgi []. ; PDB: 3SJD_D 3ZS9_C.
Probab=29.83 E-value=41 Score=37.53 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHHHHH-----HHHHHHH
Q 003362 589 LTKKEQKKLRTQRRLAREK-----DRQEMIR 614 (826)
Q Consensus 589 LTKKEqKKlRRqrR~e~~K-----EkQdKIR 614 (826)
||..||++|||.||++|-+ .+=+||-
T Consensus 2 ls~aEkrRLrRERReAKi~~GgaSaRLnKIT 32 (302)
T PF08690_consen 2 LSEAEKRRLRRERREAKIKAGGASARLNKIT 32 (302)
T ss_dssp --HHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCcHHHHHHHh
Confidence 7899999999999999986 3556664
No 71
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=23.41 E-value=69 Score=34.46 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=34.2
Q ss_pred hccccCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Q 003362 634 LGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPA 672 (826)
Q Consensus 634 Lg~eAV~DPTkvEa~VR~QmaeR~~~He~~N~eRKLT~E 672 (826)
+.++..--||-|-+.+|.|.+|+..+..+.|.+|+.-+.
T Consensus 231 Ykn~~~vs~~~vra~ir~qaae~~~~R~es~~er~vr~~ 269 (283)
T COG5154 231 YKNETFVSSTMVRAAIRNQAAENLFARKESNLERQVRAQ 269 (283)
T ss_pred eecccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 457778889999999999999999999999999987543
No 72
>PRK05320 rhodanese superfamily protein; Provisional
Probab=22.20 E-value=1e+02 Score=33.38 Aligned_cols=59 Identities=22% Similarity=0.359 Sum_probs=48.7
Q ss_pred eEEEEEEEccCCCCc-cccccccccccccceeEEEEcC-CceEEEEecchHHHHHHHHHHhh
Q 003362 691 TIVSVYKINDLSHPK-TRFKVDVNAHENRLTGCAVICE-GINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 691 v~~aVyrI~~Lsnp~-hrFKV~~NAqQl~LTG~~li~~-~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
+.++.|++-.|.||. .+-.+....+.++|+|-++|.+ |+|--| -|....|..|-.+|..
T Consensus 4 ~~~~~Y~f~~i~~~~~~~~~~~~~~~~~~~~G~i~ia~eGiN~t~-~g~~~~id~~~~~l~~ 64 (257)
T PRK05320 4 VNIAAYKFVSLDDPETLRPLVLARCEALGLKGTILLAPEGINLFL-AGTREAIDAFYAWLRA 64 (257)
T ss_pred EEEEEEceeecCCHHHHHHHHHHHHHHCCCeEEEEEcCCCceEEE-EeeHHHHHHHHHHHhh
Confidence 468999999999974 4556777889999999998875 898776 6888889999888765
No 73
>PRK01415 hypothetical protein; Validated
Probab=20.82 E-value=1.1e+02 Score=33.34 Aligned_cols=59 Identities=15% Similarity=0.293 Sum_probs=47.6
Q ss_pred eEEEEEEEccCCCCc-cccccccccccccceeEEEEcC-CceEEEEecchHHHHHHHHHHhh
Q 003362 691 TIVSVYKINDLSHPK-TRFKVDVNAHENRLTGCAVICE-GINVVVVEGGSKSIKRYGKLMLR 750 (826)
Q Consensus 691 v~~aVyrI~~Lsnp~-hrFKV~~NAqQl~LTG~~li~~-~~nlVVVEGG~KsiKkYkkLMl~ 750 (826)
+.++.|++-.|.||. .+-.+...+++++|+|-++|.+ |+|--| -|...+|..|-..|..
T Consensus 6 ~v~~fY~f~~i~~~~~~~~~l~~~~~~~~~~G~i~la~EGIN~ti-sg~~~~~~~~~~~l~~ 66 (247)
T PRK01415 6 AILSAYSFVNIEEPANLIPKLLLIGKRKYVRGTILLANEGFNGSF-SGSYENVNLVLEELIK 66 (247)
T ss_pred EEEEEEccccCCCHHHHHHHHHHHHHHcCCeeEEEEccCccceEe-eCCHHHHHHHHHHHHh
Confidence 568999999999974 4666777899999999998875 888654 5777889999877754
No 74
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=20.82 E-value=3.8e+02 Score=27.64 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=12.6
Q ss_pred CCCCCCHHHHHHHHHHH
Q 003362 585 QPLKLTKKEQKKLRTQR 601 (826)
Q Consensus 585 ~plyLTKKEqKKlRRqr 601 (826)
.-|-||...+.+|+..+
T Consensus 49 ~~L~LTdeQk~qik~i~ 65 (170)
T PRK12750 49 RQLDLTDAQKEQLKEMR 65 (170)
T ss_pred hhCCCCHHHHHHHHHHH
Confidence 45889988888876544
Done!