BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003363
(826 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 14/212 (6%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++HGGP G+ +++ NYRGS G+GEE + G ++
Sbjct: 341 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 400
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 401 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 447
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ DW + +F E + S+SPI+H+ ++K P + D R
Sbjct: 448 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSR 506
Query: 773 VPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
P+ L+ L +G + + P+ H I
Sbjct: 507 TPLKPLLRLMGELLARGKTFEAHIIPDAGHAI 538
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 14/212 (6%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++HGGP G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ DW + +F E + S+SPI+H+ ++K P + D R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSR 526
Query: 773 VPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
P+ L+ L +G + + P+ H I
Sbjct: 527 TPLKPLLRLMGELLARGKTFEAHIIPDAGHAI 558
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 14/212 (6%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++HGGP G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA S++ ++G ++GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYAYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ DW + +F E + S+SPI+H+ ++K P + D R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSR 526
Query: 773 VPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
P+ L+ L +G + + P+ H I
Sbjct: 527 TPLKPLLRLMGELLARGKTFEAHIIPDAGHAI 558
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 14/212 (6%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++HGGP G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ DW + +F E + S+SPI+H+ ++K P + + R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNNSR 526
Query: 773 VPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
P+ L+ L +G + + P+ H I
Sbjct: 527 TPLKPLLRLMGELLARGKTFEAHIIPDAGHAI 558
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 14/212 (6%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++HGGP G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ DW + +F E + S+SPI+H+ ++K P + R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNASR 526
Query: 773 VPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
P+ L+ L +G + + P+ H I
Sbjct: 527 TPLKPLLRLMGELLARGKTFEAHIIPDAGHAI 558
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 9/222 (4%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V HGGP G + VNY GS G+G + L G+ G DV
Sbjct: 425 PYVVXAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDV 484
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
D + + G A+ +++ V GGS GG+ + + D + P+ +L +
Sbjct: 485 EDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSL-VSTDVYACGTVLYPVLDL---L 540
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
G D + Y SF E P R+ ++P++ +V+ P + L G +D
Sbjct: 541 GWADGGTHDFESRYLDFLIGSFEEFPE-----RYRDRAPLTRADRVRVPFLLLQGLEDPV 595
Query: 773 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 814
P ++ A+ GV + F + HG R ++ +
Sbjct: 596 CPPEQCDRFLEAVAGCGVPHAYLSFEGEGHGFRRKETXVRAL 637
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 14/212 (6%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++ GGP G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVAGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ DW + +F E + S+SPI+H+ ++K P + D R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSR 526
Query: 773 VPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
P+ L+ L +G + + P+ H I
Sbjct: 527 TPLKPLLRLMGELLARGKTFEAHIIPDAGHAI 558
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 85/184 (46%), Gaps = 16/184 (8%)
Query: 621 GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSH 680
GY + ++ RG+ G + +L GK G+ +V D L + + +P+++ V G S+
Sbjct: 552 GYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSN 611
Query: 681 GGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSV 740
GG++T L+ +A D + A P+ + L Y S + + + P+
Sbjct: 612 GGYMTLMLLAKASDSYACGVAGAPVTDWGL---------------YDSHYTERYMDLPAR 656
Query: 741 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 800
D + ++HI +++P + + G D V +N AL+++G +++ +P
Sbjct: 657 ND-AGYREARVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGA 715
Query: 801 VHGI 804
HG+
Sbjct: 716 KHGL 719
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 127/336 (37%), Gaps = 44/336 (13%)
Query: 478 GELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSP 537
G+ +TP ES + L+ DG II + SP +V V KG+ + L
Sbjct: 392 GKTKDLTP-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVT----VTNIGKGSHTLLE---- 442
Query: 538 ISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVV 597
++ P+ ++ R +IM Q P H P+IV
Sbjct: 443 -AKNPDTGYAMPEIRTGTIM-----------AADGQTPLYYKLTMPLHFDPAKKYPVIVY 490
Query: 598 LHGGPHXXXXXXXXXXXXXXXXV-----GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
++GGPH + GY++ V+ RGS G Q + ++G ++
Sbjct: 491 VYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEM 550
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
D + +D + + ++ V G S+GGF+TT+L+ D F A P+
Sbjct: 551 ADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVI------ 604
Query: 713 GTTDIPDWC-YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
DW Y YG + D+ E+P D + + + +K + + GA D
Sbjct: 605 ------DWNRYAIMYGERYFDAPQENPEGYD-----AANLLKRAGDLKGRLMLIHGAIDP 653
Query: 772 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 807
V + L + A + V+P+ H + P
Sbjct: 654 VVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVMGP 689
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 127/336 (37%), Gaps = 44/336 (13%)
Query: 478 GELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSP 537
G+ +TP ES + L+ DG II + SP +V V KG+ + L
Sbjct: 392 GKTKDLTP-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVT----VTNIGKGSHTLLE---- 442
Query: 538 ISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVV 597
++ P+ ++ R +IM Q P H P+IV
Sbjct: 443 -AKNPDTGYAMPEIRTGTIM-----------AADGQTPLYYKLTMPLHFDPAKKYPVIVY 490
Query: 598 LHGGPHXXXXXXXXXXXXXXXXV-----GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
++GGPH + GY++ V+ RGS G Q + ++G ++
Sbjct: 491 VYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEM 550
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
D + +D + + ++ V G S+GGF+TT+L+ D F A P+
Sbjct: 551 ADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVI------ 604
Query: 713 GTTDIPDWCYVE-SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
DW E YG + D+ E+P D + + + +K + + GA D
Sbjct: 605 ------DWNRYEIMYGERYFDAPQENPEGYD-----AANLLKRAGDLKGRLMLIHGAIDP 653
Query: 772 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 807
V + L + A + V+P+ H + P
Sbjct: 654 VVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVMGP 689
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/336 (22%), Positives = 127/336 (37%), Gaps = 44/336 (13%)
Query: 478 GELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSP 537
G+ +TP ES + L+ DG II + SP +V V KG+ + L
Sbjct: 392 GKTKDLTP-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVT----VTNIGKGSHTLLE---- 442
Query: 538 ISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVV 597
++ P+ ++ R +IM Q P H P+IV
Sbjct: 443 -AKNPDTGYAMPEIRTGTIM-----------AADGQTPLYYKLTMPLHFDPAKKYPVIVY 490
Query: 598 LHGGPHXXXXXXXXXXXXXXXXV-----GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
++GGPH + GY++ V+ RGS G Q + ++G ++
Sbjct: 491 VYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEM 550
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
D + +D + + ++ V G ++GGF+TT+L+ D F A P+
Sbjct: 551 ADQMCGVDFLKSQSWVDADRIGVHGWAYGGFMTTNLMLTHGDVFKVGVAGGPVI------ 604
Query: 713 GTTDIPDWCYVE-SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
DW E YG + D+ E+P D + + + +K + + GA D
Sbjct: 605 ------DWNRYEIMYGERYFDAPQENPEGYD-----AANLLKRAGDLKGRLMLIHGAIDP 653
Query: 772 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 807
V + L + A + V+P+ H + P
Sbjct: 654 VVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVMGP 689
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A + MG + +V + G S+GG++T+ ++
Sbjct: 545 RGSGYQGDKIMHAINKRLGTLEVEDQIEAARQFLKMGFVDSKRVAIWGWSYGGYVTSMVL 604
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 605 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 649
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 650 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDAGVDFQAMWYTDEDHGI 706
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 91/217 (41%), Gaps = 20/217 (9%)
Query: 593 PLIVVLHGGPHXXXXXXXXXX---XXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649
PL++ ++GGP G + +V+ RG+ G++ L ++ K+G
Sbjct: 497 PLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGV 556
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+V D +TA+ I+MG + ++ + G S+GG++++ + F A P
Sbjct: 557 YEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAP----- 611
Query: 710 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL--G 767
+ W E Y S + F P+ +D + S + ++ +LL G
Sbjct: 612 -------VSSW---EYYASVYTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHG 661
Query: 768 AQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
D V N Q A+AL V+ + + + + HG+
Sbjct: 662 TADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL 698
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEATRQFSKMGFVDDKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GAGSGVFKCGIAVAP------------VSKW---EYYDSVYTERYMGLPTPEDNLDYYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQLSKALVDAGVDFQTMWYTDEDHGI 704
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 704
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 704
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 545 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 604
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 605 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 649
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 650 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 706
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 704
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 549 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 608
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 609 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 653
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 654 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 710
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 551 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 610
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 611 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 655
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 656 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 712
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 704
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 704
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 704
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 553 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 612
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 613 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 657
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 658 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 714
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 543 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 602
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 603 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 647
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 648 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 704
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 555 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 614
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 615 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 659
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 660 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 716
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 544 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 603
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 604 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 648
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 649 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 705
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 546 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 605
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 606 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 650
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 651 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 707
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 551 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 610
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 611 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 655
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 656 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 712
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 554 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 613
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 614 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 658
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 659 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 715
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 551 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 610
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 611 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 655
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 656 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 712
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 546 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 605
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 606 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 650
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 651 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 707
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 581 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 640
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 641 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 685
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 686 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 742
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
RGS G++ + ++ ++G+ +V D + A MG + ++ + G S+GG++T+ ++
Sbjct: 548 RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL 607
Query: 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHS 748
G F A P + W E Y S + + P+ ED L + +
Sbjct: 608 GSGSGVFKCGIAVAP------------VSRW---EYYDSVYTERYMGLPTPEDNLDHYRN 652
Query: 749 KSPISHISKVKTPTIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804
+ +S K L+ G D V Q ++AL + GV+ + + + ++ HGI
Sbjct: 653 STVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGI 709
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 87/218 (39%), Gaps = 11/218 (5%)
Query: 593 PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V+ HGGP G + VNY GS G+G + L G+ G DV
Sbjct: 425 PYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDV 484
Query: 653 NDVLTAIDHVIDMGLANPSKVTV-VGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
D + + G A+ +++ V G + G + L+ D + P+ +L
Sbjct: 485 EDCAAVATALAEEGTADRARLAVRGGAAGGWTAASSLVST--DVYACGTVLYPVLDL--- 539
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
+G D + Y SF E P R+ ++P++ +V+ P + L G +D
Sbjct: 540 LGWADGGTHDFESRYLDFLIGSFEEFPE-----RYRDRAPLTRADRVRVPFLLLQGLEDP 594
Query: 772 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 809
P ++ A+ GV + F + HG R ++
Sbjct: 595 VCPPEQCDRFLEAVAGCGVPHAYLSFEGEGHGFRRKET 632
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 25/212 (11%)
Query: 585 HKKDCSCD---PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQ 641
H+KD D P ++ +GG + G + N RG +G+ A
Sbjct: 436 HRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGK-AWH 494
Query: 642 SLPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA 700
Q+V +D A ++++ P ++ + GGS+GG L + Q P+ + A
Sbjct: 495 DAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVV 554
Query: 701 ARNPLCNLA----LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS 756
PL ++ G T IP+ YG+ E P ED H+ SP H+
Sbjct: 555 CAVPLLDMVRYHLFGSGRTWIPE------YGT------AEKP--EDFKTLHAYSPYHHVR 600
Query: 757 -KVKTPTIFLLGA-QDLRVPVSNGLQYARALR 786
V+ P + ++ A D RV + ++ A++
Sbjct: 601 PDVRYPALLMMAADHDDRVDPMHARKFVAAVQ 632
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 625 LIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFL 684
++ N RG FG E +S G ND + +I + +P + + GGS+GG L
Sbjct: 512 VLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLL 571
Query: 685 TTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 744
+ + Q P+ F A A P+ ++ W V YG E P+ DL
Sbjct: 572 VSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSW--VTEYGD------PEIPN--DLL 621
Query: 745 RFHSKSPISHISKV-KTPTIFL 765
+P+ ++S K PT+ +
Sbjct: 622 HIKKYAPLENLSLTQKYPTVLI 643
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGXSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQYARALR 786
+ SP+ ++ ++ P++ LL A D RV + L++ L+
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQ 657
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGCSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQYARALR 786
+ SP+ ++ ++ P++ LL A D RV + L++ L+
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQ 657
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGCSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQYARALR 786
+ SP+ ++ ++ P++ LL A D RV + L++ L+
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQ 657
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGCSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQYARALR 786
+ SP+ ++ ++ P++ LL A D RV + L++ L+
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQ 657
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGCSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQYARALR 786
+ SP+ ++ ++ P++ LL A D RV + L++ L+
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQ 657
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGCSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQYARALR 786
+ SP+ ++ ++ P++ LL A D RV + L++ L+
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQ 657
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 494 MGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 553
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 554 NGGLLVAACANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGCSDS 603
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQYARALR 786
+ SP+ ++ ++ P++ LL A D RV + L++ L+
Sbjct: 604 KQHFEWLVKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQ 656
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTCDYGCSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQYARALR 786
+ SP+ ++ ++ P++ LL A D RV + L++ L+
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQ 657
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GG+
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGA 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
+GG L Q PD F A+ VG D+ + + + G + S S
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ---------VGVMDMLKF-HKYTIGHAWTTDYGCSDS 604
Query: 740 VEDLTRFHSKSPISHI-----SKVKTPTIFLLGA-QDLRVPVSNGLQYARALR 786
+ SP+ ++ ++ P++ LL A D RV + L++ L+
Sbjct: 605 KQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQ 657
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAAR 702
+GG L Q PD F A+
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ 577
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 620 VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
+G L + N RG +GE + +D A +++I G +P ++T+ GGS
Sbjct: 495 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 554
Query: 680 HGGFLTTHLIGQAPDKFVAAAAR 702
+GG L Q PD F A+
Sbjct: 555 NGGLLVATCANQRPDLFGCVIAQ 577
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
+D + A + +++ L PS++ G S GG L ++ PD F A A P ++ +
Sbjct: 571 SDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTM 630
Query: 713 GTTDIP----DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL-LG 767
IP +W E +G+ + + + S SP+ ++ + P I + G
Sbjct: 631 CDPSIPLTTGEW---EEWGNPNEYKYYDY--------MLSYSPMDNVRAQEYPNIMVQCG 679
Query: 768 AQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 801
D RV ++ LRE + I+ D+
Sbjct: 680 LHDPRVAYWEPAKWVSKLRECKTDNNEILLNIDM 713
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 26/209 (12%)
Query: 621 GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGS 679
G + + N RG +G+ A + Q+V +D + A + +I G+ + + GGS
Sbjct: 517 GGAFALANLRGGGEYGD-AWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGS 575
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY-VESYGSKGKDSFTESP 738
+GG L + Q PD F AA +P + M+ Y V+ YG K++
Sbjct: 576 NGGLLIGAVTNQRPDLFAAA---SPAVGVMDMLRFDQFTAGRYWVDDYGYPEKEA----- 627
Query: 739 SVEDLTRFHSKSPISHI-SKVKTPTIFLLGAQ-DLRVPVSNGLQYARALREKGVETK--- 793
D SP ++ S V P I + A D RV + +Y AL+ + K
Sbjct: 628 ---DWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPHL 684
Query: 794 VIVFPNDVHGIERP-------QSDFESFL 815
+ + HG +P +D ++FL
Sbjct: 685 IRIETRAGHGSGKPIDKQIEETADVQAFL 713
>pdb|3VKF|A Chain A, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|B Chain B, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 585
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 1/127 (0%)
Query: 557 MKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHXXXXXXXXXXXXX 616
+ +P + V + A+KP + I + P++V +HGG +
Sbjct: 114 IYVPTEDVKRISKECARKPGKKICRKGDIRDSGGPKPVMVYIHGGSYMEGTGNLYDGSVL 173
Query: 617 XXXVGYSLLIVNYR-GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTV 675
++ VNYR G LGF Q+ G G D+ L I +P ++TV
Sbjct: 174 ASYGNVIVITVNYRLGVLGFLSTGDQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITV 233
Query: 676 VGGSHGG 682
G GG
Sbjct: 234 FGSGAGG 240
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase
From Clostridium Difficile
Length = 208
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 16/196 (8%)
Query: 34 HTRFTVAKPAYFSYKRLSVFLAMDASKAAPAKQVSSVLDA--TAEEEYA-----SLSKLL 86
+ +F V KP ++Y L ++ + K K + +D A E+Y SL +LL
Sbjct: 3 NNKFKV-KPLPYAYDALEPYIDKETMKLHHDKHYQAYVDKLNAALEKYPELYNYSLCELL 61
Query: 87 QDFTNISSIDKAWTF--NSGNGNGTQAMFSISQP-NLLANKRKKFMLSTVISKENENSVT 143
Q+ ++ D A T N+G + F I P + ++ K + +
Sbjct: 62 QNLDSLPK-DIATTVRNNAGGAYNHKFFFDIMTPEKTIPSESLKEAIDRDFGSFEKFKQE 120
Query: 144 FQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL---EKEFHVPQTV 200
FQ + V +G + +V + G KL ++ P +SP+ L L E +++
Sbjct: 121 FQKSALDVFGSGWAWLVATKDG-KLSIMTTPNQDSPVSKNLTPIIGLDVWEHAYYLKYQN 179
Query: 201 HGSVYADGWFEGISWN 216
+ Y D WF ++WN
Sbjct: 180 RRNEYIDNWFNVVNWN 195
>pdb|3BE8|A Chain A, Crystal Structure Of The Synaptic Protein Neuroligin 4
pdb|3BE8|B Chain B, Crystal Structure Of The Synaptic Protein Neuroligin 4
pdb|2WQZ|A Chain A, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|B Chain B, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|A Chain A, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|B Chain B, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 588
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 590 SCDPLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYR-GSLGFGEEALQSLPGKVG 648
S P++V +HGG + ++ +NYR G LGF Q+ G G
Sbjct: 133 SKKPVMVYIHGGSYMEGTGNMIDGSILASYGNVIVITINYRLGILGFLSTGDQAAKGNYG 192
Query: 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682
D L I+ + +P +VT+ G G
Sbjct: 193 LLDQIQALRWIEENVGAFGGDPKRVTIFGSGAGA 226
>pdb|3KSR|A Chain A, Crystal Structure Of A Putative Serine Hydrolase (Xcc3885)
From Xanthomonas Campestris Pv. Campestris At 2.69 A
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708
+Q+++D+ A D + + + + VVG S+GG+L+ L + P +++ A R+P
Sbjct: 79 AQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERPVEWL--ALRSPA--- 133
Query: 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP-----ISHISKVKTPTI 763
Y +++ + K S P + D R + +P ++ ++ K +
Sbjct: 134 ------------LYKDAHWDQPKVSLNADPDLXDYRR-RALAPGDNLALAACAQYKGDVL 180
Query: 764 FLLGAQDLRVPVSNGLQYARAL-REKGVETKVIVFPNDVHGIERPQSDFESFL 815
+ D+ VP YA A + + ++VI + ++ Q ++ L
Sbjct: 181 LVEAENDVIVPHPVXRNYADAFTNARSLTSRVIAGADHALSVKEHQQEYTRAL 233
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 16/209 (7%)
Query: 584 SHKKDCSCD---PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEAL 640
S++K D P I+ +GG +G + N RG +G+ A
Sbjct: 443 SYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQ-AW 501
Query: 641 QSLPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 699
+ Q+V +D + A +++ G ++ + GGS+GG L ++ Q PD A
Sbjct: 502 HLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVA 561
Query: 700 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS-KV 758
+ ++ T W Y YG+ +S ++ D + + SP+ ++ V
Sbjct: 562 LPAVGVLDMLRYHTFTAGTGWAY--DYGTS-----ADSEAMFDYLKGY--SPLHNVRPGV 612
Query: 759 KTPTIFLLGA-QDLRVPVSNGLQYARALR 786
P+ + A D RV ++ ++A L+
Sbjct: 613 SYPSTMVTTADHDDRVVPAHSFKFAATLQ 641
>pdb|1LZL|A Chain A, Bacterial Heroin Esterase
Length = 323
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 20/167 (11%)
Query: 652 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL-- 705
VND A+ H ++G+ +PS++ V G S GG L + +A D+ V A L
Sbjct: 130 VNDCYAALLYIHAHAEELGI-DPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEI 188
Query: 706 ------CNLALMVGTTDIPDWCY---VESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS 756
M D P W + S+ +S++ P D++ + + S + ++
Sbjct: 189 PELDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYS-GPEDPDVSIYAAPSRATDLT 247
Query: 757 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803
+ + + LR G++YA L + GV ++ FP HG
Sbjct: 248 GLPPTYLSTMELDPLR---DEGIEYALRLLQAGVSVELHSFPGTFHG 291
>pdb|2BCE|A Chain A, Cholesterol Esterase From Bos Taurus
Length = 579
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 624 LLIVNYR-GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682
++ NYR G LGF +LPG G D + + + I+ +P ++T+ G S GG
Sbjct: 138 VVTFNYRVGPLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGG 197
>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
Length = 475
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 638 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN--PSKVTVVGGSHGGFLTTHLIGQAPDK 695
E L + K + +++ + +D VID LA KV +VG S G F + +P++
Sbjct: 93 ETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPER 152
>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
Length = 479
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 638 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN--PSKVTVVGGSHGGFLTTHLIGQAPDK 695
E L + K + +++ + +D VID LA KV +VG S G F + +P++
Sbjct: 93 ETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPER 152
>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
Length = 484
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 638 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN--PSKVTVVGGSHGGFLTTHLIGQAPDK 695
E L + K + +++ + +D VID LA KV +VG S G F + +P++
Sbjct: 93 ETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPER 152
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 633 LGFGE-EALQSLPGKVGS---QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 688
+GFG+ E ++ PG + S V +L ++H G+ K +VG S GG +T L
Sbjct: 67 IGFGQSEYPETYPGHIMSWVGMRVEQILGLMNH---FGI---EKSHIVGNSMGGAVTLQL 120
Query: 689 IGQAPDKF 696
+ +AP++F
Sbjct: 121 VVEAPERF 128
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Query: 584 SHKKDCSCD---PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEAL 640
S++K D P I+ +GG +G + N RG +G+ A
Sbjct: 443 SYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQ-AW 501
Query: 641 QSLPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694
+ Q+V +D + A +++ G ++ + GGS+GG L ++ Q PD
Sbjct: 502 HLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPD 556
>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
Length = 522
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 624 LLIVNYR-GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682
++ NYR G LGF +LPG G +D + + + I +P+ +T+ G S GG
Sbjct: 138 VVTFNYRVGPLGFLSTGDANLPGNYGLRDQHMAIAWVKRNIAAFGGDPNNITLFGESAGG 197
>pdb|1AQL|A Chain A, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
pdb|1AQL|B Chain B, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
Length = 532
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 624 LLIVNYR-GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682
++ NYR G LGF +LPG G D + + + I+ +P +T+ G S GG
Sbjct: 138 VVTFNYRVGPLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDNITLFGESAGG 197
>pdb|1AKN|A Chain A, Structure Of Bile-salt Activated Lipase
Length = 579
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 624 LLIVNYR-GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682
++ NYR G LGF +LPG G D + + + I+ +P +T+ G S GG
Sbjct: 138 VVTFNYRVGPLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDNITLFGESAGG 197
>pdb|1F6W|A Chain A, Structure Of The Catalytic Domain Of Human Bile Salt
Activated Lipase
Length = 533
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 624 LLIVNYR-GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682
++ NYR G LGF +LPG G +D + + + I +P +T+ G S GG
Sbjct: 138 VVTFNYRVGPLGFLSTGDANLPGNYGLRDQHMAIAWVKRNIAAFGGDPDNITLFGESAGG 197
>pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima
Length = 344
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 764 FLLGAQDLRVP-VSNGLQYARAL-REKGVETKVIVFPND 800
F++G L +P V NG+ +A+ RE GV TKV V ND
Sbjct: 203 FVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASND 241
>pdb|1L2F|A Chain A, Crystal Structure Of Nusa From Thermotoga Maritima: A
Structure-Based Role Of The N-Terminal Domain
Length = 369
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 764 FLLGAQDLRVP-VSNGLQYARAL-REKGVETKVIVFPND 800
F++G L +P V NG+ +A+ RE GV TKV V ND
Sbjct: 228 FVIGLXKLEIPEVENGIVEIKAIAREPGVRTKVAVASND 266
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 724 ESYGSKGKDSFTESPSVEDLTRFH-SKSPISHISKVKTPTIFLLGAQDLRVPV 775
E YG +G DS +E++ R S S I ++K+ T + L G+++L+ V
Sbjct: 71 EEYGGQGADSVATCIVIEEVARVDCSASLIPAVNKLGTMGLILRGSEELKKQV 123
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 5/115 (4%)
Query: 584 SHKKDCSCD---PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEAL 640
S++K D P I+ +GG +G + N RG +G+ A
Sbjct: 443 SYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQ-AW 501
Query: 641 QSLPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694
+ Q+V +D + A +++ G ++ + GGS+GG L + Q PD
Sbjct: 502 HLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPD 556
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 5/115 (4%)
Query: 584 SHKKDCSCD---PLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEAL 640
S++K D P I+ +GG +G + N RG +G+ A
Sbjct: 443 SYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQ-AW 501
Query: 641 QSLPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694
+ Q+V +D + A +++ G ++ + GGS+GG L + Q PD
Sbjct: 502 HLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPD 556
>pdb|2XLB|A Chain A, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|B Chain B, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|C Chain C, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|D Chain D, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|E Chain E, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|F Chain F, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|G Chain G, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|H Chain H, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|I Chain I, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|J Chain J, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|K Chain K, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|L Chain L, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
Length = 320
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 3/124 (2%)
Query: 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713
D + A++ + + ++ V+GGS GG L + V A L N V
Sbjct: 156 DAVRALEVIQSFPEVDEHRIGVIGGSQGGALAIAAAALSDIPKVVVADYPYLSNFERAVD 215
Query: 714 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV 773
+ + SY + D E + E L+ F I+ VK PT+ +G D
Sbjct: 216 VALEQPYLEINSYFRRNSDPEVEEKAFETLSYF---DLINLAGWVKQPTLMAIGLIDQVT 272
Query: 774 PVSN 777
P S
Sbjct: 273 PPST 276
>pdb|3FVR|A Chain A, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|B Chain B, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|C Chain C, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|D Chain D, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|E Chain E, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|F Chain F, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|G Chain G, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|H Chain H, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|I Chain I, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|L Chain L, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|M Chain M, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|N Chain N, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVT|A Chain A, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|B Chain B, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|C Chain C, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|D Chain D, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|E Chain E, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|F Chain F, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|G Chain G, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|H Chain H, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|I Chain I, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|L Chain L, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|M Chain M, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|N Chain N, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FYU|C Chain C, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|E Chain E, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|F Chain F, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|G Chain G, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|L Chain L, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|M Chain M, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|N Chain N, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
Length = 320
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 3/124 (2%)
Query: 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713
D + A++ + + ++ V+GGS GG L + V A L N V
Sbjct: 156 DAVRALEVIQSFPEVDEHRIGVIGGSQGGALAIAAAALSDIPKVVVADYPYLSNFERAVD 215
Query: 714 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV 773
+ + SY + D E + E L+ F I+ VK PT+ +G D
Sbjct: 216 VALEQPYLEINSYFRRNSDPKVEEKAFETLSYF---DLINLAGWVKQPTLMAIGLIDKIT 272
Query: 774 PVSN 777
P S
Sbjct: 273 PPST 276
>pdb|2XLC|A Chain A, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|B Chain B, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|C Chain C, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|D Chain D, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|E Chain E, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|F Chain F, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
Length = 320
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 3/124 (2%)
Query: 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713
D + A++ + + ++ V+GGS GG L + V A L N V
Sbjct: 156 DAVRALEVIQSFPEVDEHRIGVIGGSQGGALAIAAAALSDIPKVVVADYPYLSNFERAVD 215
Query: 714 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV 773
+ + SY + D E + E L+ F I+ VK PT+ +G D
Sbjct: 216 VALEQPYLEINSYFRRNSDPEVEEKAFETLSYF---DLINLAGWVKQPTLXAIGLIDQVT 272
Query: 774 PVSN 777
P S
Sbjct: 273 PPST 276
>pdb|3DFZ|A Chain A, Sirc, Precorrin-2 Dehydrogenase
pdb|3DFZ|B Chain B, Sirc, Precorrin-2 Dehydrogenase
Length = 223
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 9 VIATSDWCANQLLPRISPSFLSRHRHTRFT---VAKPAYFSYKRLSVFLAMDASKAAPAK 65
V+AT+D N+ + + + + + F+ + PA FS RLS+ ++ D + K
Sbjct: 96 VVATNDQAVNKFVKQHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTK 155
Query: 66 QVSSVLDATAEEEYASLSKLLQD 88
++ L + +E Y ++ L +
Sbjct: 156 RIKEDLSSNYDESYTQYTQFLYE 178
>pdb|3F67|A Chain A, Crystal Structure Of Putative Dienelactone Hydrolase From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 241
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 749 KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803
K P+ + P + L GA+D +P +ALR +++V+P H
Sbjct: 159 KHPVDIAVDLNAPVLGLYGAKDASIPQDTVETXRQALRAANATAEIVVYPEADHA 213
>pdb|2OKX|A Chain A, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus
Sp. Gl1 At 1.9 A
pdb|2OKX|B Chain B, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus
Sp. Gl1 At 1.9 A
Length = 956
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 147 APFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSV 204
AP P ++T A VVP P G + V + ++ + + +E +P+ + G V
Sbjct: 892 APQPCDLTWAEGVVPLPQGGHIAVSWEFVSAGKLKLRIEAPEDIEVNVTLPEGIEGEV 949
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,074,521
Number of Sequences: 62578
Number of extensions: 1004300
Number of successful extensions: 2543
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2443
Number of HSP's gapped (non-prelim): 91
length of query: 826
length of database: 14,973,337
effective HSP length: 107
effective length of query: 719
effective length of database: 8,277,491
effective search space: 5951516029
effective search space used: 5951516029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)