Query 003363
Match_columns 826
No_of_seqs 639 out of 4383
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 22:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 100.0 2.3E-49 5.1E-54 455.8 55.4 600 102-826 18-618 (620)
2 PRK10115 protease 2; Provision 100.0 3.9E-42 8.5E-47 397.4 59.1 529 156-825 129-676 (686)
3 KOG2100 Dipeptidyl aminopeptid 100.0 2.6E-37 5.5E-42 357.3 53.3 613 103-825 103-748 (755)
4 KOG2281 Dipeptidyl aminopeptid 100.0 6.1E-34 1.3E-38 298.9 35.4 340 455-823 515-866 (867)
5 PF00326 Peptidase_S9: Prolyl 100.0 1.3E-30 2.8E-35 262.4 14.9 206 609-826 2-211 (213)
6 PRK01029 tolB translocation pr 100.0 3.3E-27 7.1E-32 260.4 30.9 285 83-498 132-425 (428)
7 COG1770 PtrB Protease II [Amin 100.0 6.3E-24 1.4E-28 228.2 51.4 323 455-805 327-658 (682)
8 COG1505 Serine proteases of th 100.0 8.5E-25 1.8E-29 231.5 40.6 344 448-826 301-648 (648)
9 PRK03629 tolB translocation pr 99.9 1.4E-25 2.9E-30 248.8 32.4 279 82-497 148-427 (429)
10 PRK05137 tolB translocation pr 99.9 2.6E-24 5.6E-29 240.2 32.5 278 83-497 151-432 (435)
11 PRK04792 tolB translocation pr 99.9 5.1E-24 1.1E-28 237.0 32.3 278 83-497 168-446 (448)
12 KOG2237 Predicted serine prote 99.9 1.8E-22 3.9E-27 214.8 42.2 322 477-825 371-706 (712)
13 PRK04922 tolB translocation pr 99.9 8.2E-24 1.8E-28 235.8 31.8 280 82-497 152-432 (433)
14 PRK02889 tolB translocation pr 99.9 8.3E-24 1.8E-28 234.9 31.6 260 109-497 164-424 (427)
15 PRK04043 tolB translocation pr 99.9 1.2E-23 2.6E-28 230.3 30.2 256 109-488 155-412 (419)
16 PRK00178 tolB translocation pr 99.9 3.5E-23 7.5E-28 231.7 32.2 280 82-497 147-427 (430)
17 PRK05137 tolB translocation pr 99.9 4.2E-22 9.1E-27 222.4 28.0 245 164-523 164-414 (435)
18 PRK01742 tolB translocation pr 99.9 2.2E-21 4.7E-26 215.9 30.9 272 82-497 153-425 (429)
19 PRK01029 tolB translocation pr 99.9 9.2E-22 2E-26 217.2 27.3 248 165-524 146-406 (428)
20 PRK04043 tolB translocation pr 99.9 1.2E-21 2.6E-26 214.6 27.9 239 166-523 155-402 (419)
21 PF00930 DPPIV_N: Dipeptidyl p 99.9 4.3E-22 9.4E-27 215.5 21.4 331 105-513 1-353 (353)
22 PRK03629 tolB translocation pr 99.9 4.6E-21 1E-25 212.6 28.3 242 166-523 164-408 (429)
23 PRK02889 tolB translocation pr 99.9 6.2E-21 1.3E-25 211.9 28.1 240 166-522 164-404 (427)
24 PRK04792 tolB translocation pr 99.9 1.7E-20 3.6E-25 208.9 28.8 241 166-522 183-426 (448)
25 PRK10566 esterase; Provisional 99.9 5.9E-21 1.3E-25 197.5 22.0 231 576-825 12-249 (249)
26 PRK04922 tolB translocation pr 99.9 2.5E-20 5.4E-25 207.8 27.8 242 165-522 167-412 (433)
27 PRK13604 luxD acyl transferase 99.9 1.4E-20 2.9E-25 192.0 22.8 223 569-805 15-246 (307)
28 PRK00178 tolB translocation pr 99.9 3.8E-20 8.2E-25 207.1 28.5 243 164-522 161-407 (430)
29 TIGR02800 propeller_TolB tol-p 99.9 2.1E-19 4.5E-24 201.0 31.8 254 108-488 155-409 (417)
30 PLN02298 hydrolase, alpha/beta 99.9 7.2E-20 1.6E-24 197.6 24.1 246 568-825 37-318 (330)
31 COG0823 TolB Periplasmic compo 99.9 9.1E-20 2E-24 197.7 24.6 240 123-484 169-410 (425)
32 KOG1455 Lysophospholipase [Lip 99.9 3E-20 6.5E-25 183.0 18.6 250 567-824 31-312 (313)
33 PHA02857 monoglyceride lipase; 99.8 1.1E-19 2.3E-24 191.2 23.9 243 568-825 5-274 (276)
34 PLN02385 hydrolase; alpha/beta 99.8 1E-19 2.2E-24 197.6 23.6 249 568-825 66-346 (349)
35 PLN02442 S-formylglutathione h 99.8 1.7E-19 3.8E-24 188.5 21.1 233 572-826 28-282 (283)
36 PRK01742 tolB translocation pr 99.8 1.1E-18 2.5E-23 194.1 26.2 233 165-520 168-403 (429)
37 PRK05077 frsA fermentation/res 99.8 6.1E-19 1.3E-23 193.4 23.2 232 571-826 176-414 (414)
38 PRK10749 lysophospholipase L2; 99.8 6.3E-19 1.4E-23 189.6 21.9 248 567-824 34-329 (330)
39 PF01738 DLH: Dienelactone hyd 99.8 2.4E-19 5.2E-24 181.0 16.9 204 576-825 1-218 (218)
40 TIGR02800 propeller_TolB tol-p 99.8 5.4E-18 1.2E-22 189.6 28.2 244 162-521 152-397 (417)
41 TIGR02821 fghA_ester_D S-formy 99.8 2.9E-18 6.3E-23 179.1 22.3 233 572-825 23-275 (275)
42 COG1647 Esterase/lipase [Gener 99.8 7.6E-19 1.7E-23 164.2 14.3 210 593-822 16-242 (243)
43 PLN02652 hydrolase; alpha/beta 99.8 6.1E-18 1.3E-22 183.9 23.3 246 568-826 115-389 (395)
44 PRK10162 acetyl esterase; Prov 99.8 2.3E-17 5.1E-22 175.6 25.1 221 575-826 68-317 (318)
45 COG0823 TolB Periplasmic compo 99.8 1.4E-17 3.1E-22 180.7 22.8 206 211-521 196-402 (425)
46 COG0412 Dienelactone hydrolase 99.8 2.8E-17 6E-22 165.5 21.4 207 573-826 11-235 (236)
47 PF05448 AXE1: Acetyl xylan es 99.8 2.6E-17 5.5E-22 172.8 19.7 241 567-824 60-320 (320)
48 COG2267 PldB Lysophospholipase 99.8 6.7E-17 1.5E-21 169.0 21.3 245 567-825 13-295 (298)
49 PRK11460 putative hydrolase; P 99.7 1.8E-16 3.9E-21 160.6 21.9 186 589-825 13-209 (232)
50 KOG1552 Predicted alpha/beta h 99.7 7.3E-17 1.6E-21 156.3 17.2 209 569-823 41-251 (258)
51 PRK05371 x-prolyl-dipeptidyl a 99.7 5.2E-16 1.1E-20 181.2 25.7 208 613-826 271-521 (767)
52 TIGR01840 esterase_phb esteras 99.7 1.5E-16 3.3E-21 159.6 17.5 191 579-788 2-197 (212)
53 PRK00870 haloalkane dehalogena 99.7 4.5E-16 9.8E-21 165.8 22.1 221 591-824 45-301 (302)
54 PRK10985 putative hydrolase; P 99.7 5.7E-16 1.2E-20 166.1 21.3 225 589-825 55-321 (324)
55 KOG4391 Predicted alpha/beta h 99.7 1.1E-16 2.4E-21 148.0 12.4 225 567-824 58-282 (300)
56 TIGR03343 biphenyl_bphD 2-hydr 99.7 4.9E-16 1.1E-20 164.0 19.3 215 592-822 30-281 (282)
57 PLN02511 hydrolase 99.7 5.9E-16 1.3E-20 169.4 20.4 243 570-825 78-366 (388)
58 COG3458 Acetyl esterase (deace 99.7 2.9E-16 6.3E-21 150.9 14.5 241 565-823 58-316 (321)
59 COG0657 Aes Esterase/lipase [L 99.7 3.8E-16 8.3E-21 166.8 17.2 232 574-825 62-311 (312)
60 PLN02824 hydrolase, alpha/beta 99.7 5.7E-16 1.2E-20 164.4 17.8 221 593-824 30-294 (294)
61 TIGR01607 PST-A Plasmodium sub 99.7 2.5E-15 5.4E-20 161.1 21.4 244 569-822 3-331 (332)
62 TIGR03611 RutD pyrimidine util 99.7 9.9E-16 2.1E-20 158.9 17.9 216 590-822 11-256 (257)
63 KOG4178 Soluble epoxide hydrol 99.7 4.6E-15 1E-19 149.3 21.2 224 588-825 40-321 (322)
64 TIGR02240 PHA_depoly_arom poly 99.7 3.5E-15 7.5E-20 156.8 20.6 229 572-824 10-266 (276)
65 PLN02965 Probable pheophorbida 99.7 3.8E-15 8.2E-20 154.5 20.5 214 594-823 5-252 (255)
66 KOG1515 Arylacetamide deacetyl 99.7 3.3E-15 7.1E-20 155.6 19.3 232 574-824 72-335 (336)
67 TIGR02427 protocat_pcaD 3-oxoa 99.7 1.3E-15 2.9E-20 157.0 16.1 213 591-821 12-250 (251)
68 PRK10673 acyl-CoA esterase; Pr 99.7 3.6E-15 7.9E-20 154.8 19.3 217 588-823 12-254 (255)
69 PF12695 Abhydrolase_5: Alpha/ 99.7 2.8E-15 6.2E-20 140.8 16.7 145 594-803 1-145 (145)
70 PRK03592 haloalkane dehalogena 99.7 1.2E-14 2.6E-19 154.3 23.3 216 592-824 27-289 (295)
71 TIGR00976 /NonD putative hydro 99.7 4.2E-15 9.1E-20 170.6 21.2 130 571-709 4-135 (550)
72 TIGR03056 bchO_mg_che_rel puta 99.6 7.4E-15 1.6E-19 154.5 19.7 215 591-822 27-278 (278)
73 PF07859 Abhydrolase_3: alpha/ 99.6 1E-15 2.2E-20 153.9 11.9 190 595-805 1-210 (211)
74 PLN02679 hydrolase, alpha/beta 99.6 1.4E-14 3.1E-19 157.4 21.6 219 592-823 88-356 (360)
75 PLN03087 BODYGUARD 1 domain co 99.6 1.1E-14 2.3E-19 160.4 20.5 236 570-823 182-478 (481)
76 PF02129 Peptidase_S15: X-Pro 99.6 1.6E-15 3.4E-20 158.4 12.7 223 572-803 1-271 (272)
77 TIGR01250 pro_imino_pep_2 prol 99.6 2.1E-14 4.5E-19 151.6 19.2 218 591-822 24-288 (288)
78 TIGR03100 hydr1_PEP hydrolase, 99.6 4.9E-15 1.1E-19 154.7 14.0 238 571-823 9-274 (274)
79 PF02230 Abhydrolase_2: Phosph 99.6 2E-14 4.3E-19 144.6 16.9 191 588-825 10-216 (216)
80 PF00930 DPPIV_N: Dipeptidyl p 99.6 7.4E-14 1.6E-18 151.3 22.6 262 162-521 1-315 (353)
81 PRK11071 esterase YqiA; Provis 99.6 3.2E-14 7E-19 139.1 17.8 183 593-822 2-189 (190)
82 TIGR03695 menH_SHCHC 2-succiny 99.6 2.7E-14 5.8E-19 147.0 18.1 212 593-821 2-250 (251)
83 COG0429 Predicted hydrolase of 99.6 8.3E-14 1.8E-18 139.7 20.5 227 588-825 71-341 (345)
84 TIGR01738 bioH putative pimelo 99.6 8.1E-15 1.8E-19 150.6 13.8 206 593-821 5-245 (245)
85 PLN02894 hydrolase, alpha/beta 99.6 4.9E-14 1.1E-18 154.9 19.3 222 590-826 103-387 (402)
86 PRK03204 haloalkane dehalogena 99.6 4.6E-14 1E-18 148.7 18.0 210 592-821 34-285 (286)
87 PRK10349 carboxylesterase BioH 99.6 3.2E-14 6.9E-19 147.8 16.4 206 593-821 14-253 (256)
88 COG4946 Uncharacterized protei 99.6 9.9E-13 2.1E-17 134.8 26.4 344 91-513 73-514 (668)
89 PF06500 DUF1100: Alpha/beta h 99.6 4.2E-14 9.2E-19 148.9 16.8 227 573-825 174-410 (411)
90 PLN02872 triacylglycerol lipas 99.6 3.3E-14 7.2E-19 153.9 15.7 248 570-825 51-390 (395)
91 KOG0271 Notchless-like WD40 re 99.6 1.2E-13 2.6E-18 137.9 18.0 326 94-503 113-467 (480)
92 TIGR01836 PHA_synth_III_C poly 99.6 8.9E-14 1.9E-18 151.0 18.8 236 576-824 48-350 (350)
93 PF12697 Abhydrolase_6: Alpha/ 99.6 4.3E-15 9.3E-20 150.5 8.0 196 595-805 1-218 (228)
94 PRK07581 hypothetical protein; 99.6 3.9E-14 8.5E-19 153.4 15.8 224 591-825 40-337 (339)
95 PRK14875 acetoin dehydrogenase 99.6 8.1E-14 1.8E-18 153.4 17.5 212 590-823 129-370 (371)
96 COG4099 Predicted peptidase [G 99.6 3.3E-14 7.2E-19 138.2 12.3 176 571-798 169-354 (387)
97 TIGR01249 pro_imino_pep_1 prol 99.6 2.5E-13 5.4E-18 144.8 20.4 215 592-825 27-306 (306)
98 COG2945 Predicted hydrolase of 99.5 1.8E-13 3.9E-18 125.6 16.0 197 569-825 9-209 (210)
99 PLN02578 hydrolase 99.5 1.9E-13 4E-18 148.6 19.4 210 593-822 87-353 (354)
100 PRK06489 hypothetical protein; 99.5 7.7E-14 1.7E-18 152.1 16.4 221 592-825 69-358 (360)
101 PLN00021 chlorophyllase 99.5 4.4E-13 9.6E-18 140.8 21.4 182 574-804 37-241 (313)
102 TIGR01392 homoserO_Ac_trn homo 99.5 1.7E-13 3.6E-18 149.0 18.1 244 573-822 15-351 (351)
103 PRK00175 metX homoserine O-ace 99.5 2.8E-13 6E-18 148.4 18.7 231 591-824 47-374 (379)
104 KOG4409 Predicted hydrolase/ac 99.5 3.9E-13 8.5E-18 135.6 18.0 221 590-823 88-363 (365)
105 PF10503 Esterase_phd: Esteras 99.5 1.8E-13 3.9E-18 134.5 15.2 191 577-787 2-197 (220)
106 KOG4667 Predicted esterase [Li 99.5 2.9E-13 6.2E-18 125.8 15.5 208 589-810 30-246 (269)
107 PRK11126 2-succinyl-6-hydroxy- 99.5 3.4E-13 7.4E-18 138.8 17.9 205 593-823 3-241 (242)
108 TIGR03101 hydr2_PEP hydrolase, 99.5 3.5E-12 7.6E-17 130.2 23.9 220 570-800 6-243 (266)
109 PLN03084 alpha/beta hydrolase 99.5 9.7E-13 2.1E-17 142.4 21.0 218 591-823 126-383 (383)
110 PF14583 Pectate_lyase22: Olig 99.5 2E-12 4.4E-17 134.3 21.8 313 102-521 41-383 (386)
111 PLN02211 methyl indole-3-aceta 99.5 1.5E-12 3.2E-17 135.9 19.9 214 590-820 16-266 (273)
112 COG0400 Predicted esterase [Ge 99.5 2.1E-12 4.5E-17 125.6 18.4 188 588-825 14-206 (207)
113 PF08840 BAAT_C: BAAT / Acyl-C 99.5 1.9E-13 4.1E-18 136.0 11.3 174 652-826 3-212 (213)
114 KOG1838 Alpha/beta hydrolase [ 99.4 1.1E-11 2.4E-16 129.5 22.0 242 572-824 102-388 (409)
115 PRK08775 homoserine O-acetyltr 99.4 2.2E-12 4.9E-17 139.7 16.5 198 610-823 85-338 (343)
116 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.1E-10 2.3E-15 124.2 29.2 246 156-523 33-281 (300)
117 PF12715 Abhydrolase_7: Abhydr 99.4 8.1E-13 1.8E-17 136.5 10.4 217 567-800 92-344 (390)
118 KOG3043 Predicted hydrolase re 99.4 5E-12 1.1E-16 119.2 14.6 171 610-826 56-242 (242)
119 KOG0271 Notchless-like WD40 re 99.4 3.1E-11 6.7E-16 120.9 20.9 143 154-317 116-264 (480)
120 KOG1454 Predicted hydrolase/ac 99.4 3E-12 6.5E-17 135.4 14.6 221 590-825 56-325 (326)
121 COG3509 LpqC Poly(3-hydroxybut 99.4 2E-11 4.4E-16 120.4 18.5 225 572-824 43-307 (312)
122 PLN02980 2-oxoglutarate decarb 99.3 1.7E-11 3.7E-16 155.7 19.2 227 591-824 1370-1639(1655)
123 PRK06765 homoserine O-acetyltr 99.3 1.9E-11 4.1E-16 132.7 16.6 243 575-823 42-387 (389)
124 PF14583 Pectate_lyase22: Olig 99.3 1E-10 2.2E-15 121.8 21.1 271 137-507 19-302 (386)
125 TIGR01838 PHA_synth_I poly(R)- 99.3 5.6E-11 1.2E-15 132.4 19.7 227 562-805 163-457 (532)
126 KOG0315 G-protein beta subunit 99.3 1.6E-10 3.5E-15 109.6 18.4 251 154-485 41-297 (311)
127 PRK05855 short chain dehydroge 99.3 4.6E-11 1E-15 140.0 17.5 232 570-823 9-291 (582)
128 KOG0318 WD40 repeat stress pro 99.3 4.3E-09 9.3E-14 110.1 29.0 353 85-521 6-392 (603)
129 KOG0293 WD40 repeat-containing 99.3 2.7E-10 5.9E-15 115.3 19.4 277 154-508 225-503 (519)
130 PRK10439 enterobactin/ferric e 99.3 2.1E-10 4.6E-15 125.1 20.2 195 573-805 191-393 (411)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 2.1E-09 4.6E-14 114.1 27.2 239 104-484 38-288 (300)
132 PF12740 Chlorophyllase2: Chlo 99.2 3.4E-10 7.3E-15 112.6 17.1 177 578-803 6-205 (259)
133 COG4946 Uncharacterized protei 99.2 2.5E-09 5.5E-14 110.2 23.6 149 154-393 360-510 (668)
134 KOG0279 G protein beta subunit 99.2 1.6E-09 3.6E-14 104.7 20.5 238 105-473 72-312 (315)
135 KOG2984 Predicted hydrolase [G 99.2 1.3E-11 2.8E-16 113.5 5.4 213 594-823 44-275 (277)
136 KOG4627 Kynurenine formamidase 99.2 9.6E-11 2.1E-15 108.2 9.7 182 589-804 64-248 (270)
137 COG2706 3-carboxymuconate cycl 99.2 1.8E-08 3.8E-13 101.9 26.7 268 104-485 47-332 (346)
138 COG2936 Predicted acyl esteras 99.2 4.2E-10 9E-15 123.0 16.4 218 571-804 27-292 (563)
139 PRK11028 6-phosphogluconolacto 99.2 1.2E-08 2.6E-13 110.1 27.7 256 103-483 41-313 (330)
140 PF03583 LIP: Secretory lipase 99.2 8.8E-10 1.9E-14 115.0 18.1 200 613-825 18-282 (290)
141 PF05728 UPF0227: Uncharacteri 99.2 1.8E-09 3.8E-14 104.0 18.6 183 594-821 1-186 (187)
142 KOG0265 U5 snRNP-specific prot 99.2 3.4E-09 7.3E-14 103.6 20.3 285 154-519 48-336 (338)
143 PF00756 Esterase: Putative es 99.2 2.3E-11 5E-16 125.8 5.8 204 573-804 5-237 (251)
144 PF10282 Lactonase: Lactonase, 99.2 1.8E-08 4E-13 108.9 27.9 269 105-484 45-332 (345)
145 PRK11028 6-phosphogluconolacto 99.2 5.7E-08 1.2E-12 104.8 31.5 255 155-520 36-303 (330)
146 PRK07868 acyl-CoA synthetase; 99.1 8.7E-10 1.9E-14 135.6 19.0 234 576-824 49-361 (994)
147 PF02897 Peptidase_S9_N: Proly 99.1 2.7E-08 5.9E-13 111.0 29.1 273 156-524 126-407 (414)
148 KOG3101 Esterase D [General fu 99.1 3.2E-10 7E-15 105.1 10.8 212 575-806 27-264 (283)
149 KOG0272 U4/U6 small nuclear ri 99.1 1.9E-09 4.2E-14 109.8 17.3 268 155-506 177-449 (459)
150 PF08538 DUF1749: Protein of u 99.1 6.8E-10 1.5E-14 112.5 13.8 224 591-822 32-303 (303)
151 cd00200 WD40 WD40 domain, foun 99.1 1.1E-08 2.4E-13 106.7 23.6 266 154-506 10-280 (289)
152 PF00561 Abhydrolase_1: alpha/ 99.1 3.9E-11 8.4E-16 122.1 4.2 174 622-805 1-217 (230)
153 KOG0286 G-protein beta subunit 99.1 1.8E-08 3.9E-13 98.2 21.6 263 154-500 56-328 (343)
154 KOG0266 WD40 repeat-containing 99.1 4.2E-09 9.1E-14 118.0 20.1 283 154-516 160-451 (456)
155 KOG0279 G protein beta subunit 99.1 2.4E-08 5.2E-13 96.8 22.1 222 125-479 36-265 (315)
156 KOG0272 U4/U6 small nuclear ri 99.1 1.9E-09 4E-14 109.9 15.3 234 154-472 218-458 (459)
157 TIGR02658 TTQ_MADH_Hv methylam 99.1 2.1E-07 4.5E-12 98.2 29.4 125 375-523 197-332 (352)
158 PF10282 Lactonase: Lactonase, 99.1 1.7E-07 3.8E-12 101.3 29.6 285 127-521 13-322 (345)
159 KOG0273 Beta-transducin family 99.0 1.6E-08 3.4E-13 104.7 19.8 268 154-508 236-514 (524)
160 COG4757 Predicted alpha/beta h 99.0 2.5E-09 5.3E-14 101.2 12.7 239 571-821 13-280 (281)
161 cd00312 Esterase_lipase Estera 99.0 4.5E-10 9.8E-15 128.3 9.6 128 576-707 79-214 (493)
162 KOG0318 WD40 repeat stress pro 99.0 1.2E-07 2.5E-12 99.6 26.1 205 154-392 104-341 (603)
163 PF03403 PAF-AH_p_II: Platelet 99.0 1.5E-09 3.4E-14 117.1 12.7 190 590-826 98-360 (379)
164 KOG0291 WD40-repeat-containing 99.0 2.6E-08 5.6E-13 108.6 21.5 246 155-481 352-617 (893)
165 cd00200 WD40 WD40 domain, foun 99.0 2.5E-08 5.5E-13 104.0 21.4 269 103-471 16-288 (289)
166 PRK13616 lipoprotein LpqB; Pro 99.0 1.3E-08 2.8E-13 115.7 19.5 104 101-226 354-466 (591)
167 KOG0266 WD40 repeat-containing 99.0 3.2E-08 6.8E-13 111.0 22.1 203 154-418 204-415 (456)
168 PF08662 eIF2A: Eukaryotic tra 99.0 9.4E-09 2E-13 100.7 15.4 154 212-463 10-163 (194)
169 KOG2564 Predicted acetyltransf 99.0 9.5E-09 2.1E-13 100.1 14.7 106 574-691 60-166 (343)
170 PF06342 DUF1057: Alpha/beta h 98.9 1.7E-08 3.8E-13 99.8 14.7 106 588-705 31-136 (297)
171 KOG0645 WD40 repeat protein [G 98.9 5.7E-07 1.2E-11 87.1 24.3 227 154-473 62-310 (312)
172 TIGR01839 PHA_synth_II poly(R) 98.9 3.7E-08 7.9E-13 108.6 18.5 222 563-803 191-481 (560)
173 COG3571 Predicted hydrolase of 98.9 4.5E-08 9.8E-13 87.0 15.0 186 591-823 13-210 (213)
174 COG2706 3-carboxymuconate cycl 98.9 2.8E-06 6.1E-11 86.2 29.8 286 126-519 15-321 (346)
175 KOG1407 WD40 repeat protein [F 98.9 3.9E-07 8.5E-12 87.7 21.7 268 111-511 26-296 (313)
176 PF08662 eIF2A: Eukaryotic tra 98.9 1.3E-07 2.9E-12 92.6 19.4 150 103-317 12-162 (194)
177 PTZ00421 coronin; Provisional 98.9 6.6E-07 1.4E-11 100.2 27.3 211 154-483 76-297 (493)
178 KOG1446 Histone H3 (Lys4) meth 98.9 6.8E-07 1.5E-11 88.6 23.7 252 154-486 15-272 (311)
179 KOG2382 Predicted alpha/beta h 98.9 4.9E-08 1.1E-12 99.2 16.0 224 588-825 48-314 (315)
180 PTZ00421 coronin; Provisional 98.9 3.5E-07 7.5E-12 102.4 24.3 199 211-522 79-291 (493)
181 KOG0293 WD40 repeat-containing 98.9 3E-08 6.5E-13 100.8 14.1 280 100-474 228-513 (519)
182 COG2272 PnbA Carboxylesterase 98.9 5E-09 1.1E-13 111.5 8.8 128 576-707 80-218 (491)
183 KOG0275 Conserved WD40 repeat- 98.9 2.7E-08 5.9E-13 97.7 13.0 245 155-523 215-469 (508)
184 PRK13616 lipoprotein LpqB; Pro 98.8 1.3E-07 2.9E-12 107.5 19.8 178 211-482 353-533 (591)
185 KOG2055 WD40 repeat protein [G 98.8 1.2E-07 2.7E-12 97.9 17.4 246 105-474 266-512 (514)
186 KOG2624 Triglyceride lipase-ch 98.8 4.9E-08 1.1E-12 104.3 15.1 230 590-824 71-398 (403)
187 PF10340 DUF2424: Protein of u 98.8 6.6E-08 1.4E-12 101.4 15.5 207 578-804 108-350 (374)
188 KOG0973 Histone transcription 98.8 1.3E-07 2.8E-12 107.8 18.9 148 154-392 70-240 (942)
189 COG4188 Predicted dienelactone 98.8 1.7E-08 3.7E-13 104.2 10.8 120 573-694 49-182 (365)
190 PF09752 DUF2048: Uncharacteri 98.8 1.4E-07 3E-12 97.3 17.4 235 576-822 77-347 (348)
191 KOG0973 Histone transcription 98.8 3.1E-07 6.6E-12 104.8 21.4 120 83-229 59-193 (942)
192 KOG0263 Transcription initiati 98.8 1.4E-07 2.9E-12 104.1 17.5 197 154-413 452-650 (707)
193 PF00135 COesterase: Carboxyle 98.8 7.6E-09 1.7E-13 119.9 8.6 129 576-705 109-244 (535)
194 PF02897 Peptidase_S9_N: Proly 98.8 7.9E-07 1.7E-11 99.2 24.3 221 211-521 127-357 (414)
195 KOG0291 WD40-repeat-containing 98.8 2.1E-06 4.6E-11 94.1 25.8 231 155-508 309-541 (893)
196 PF06821 Ser_hydrolase: Serine 98.8 1.5E-07 3.2E-12 89.8 15.0 168 595-822 1-170 (171)
197 KOG2139 WD40 repeat protein [G 98.8 5.4E-07 1.2E-11 90.5 19.3 269 84-463 85-365 (445)
198 COG2382 Fes Enterochelin ester 98.8 4.2E-08 9.1E-13 98.3 11.5 208 575-824 81-295 (299)
199 PF07224 Chlorophyllase: Chlor 98.8 3.4E-08 7.3E-13 95.7 10.4 117 575-707 32-158 (307)
200 COG0596 MhpC Predicted hydrola 98.8 1.9E-07 4.2E-12 96.3 17.0 100 592-706 21-123 (282)
201 COG0627 Predicted esterase [Ge 98.8 3.5E-08 7.7E-13 102.7 11.2 227 588-825 50-312 (316)
202 PTZ00420 coronin; Provisional 98.8 2.2E-06 4.9E-11 96.6 26.1 243 161-520 34-292 (568)
203 KOG2112 Lysophospholipase [Lip 98.8 1.8E-07 3.9E-12 88.5 14.4 115 667-823 89-203 (206)
204 KOG0772 Uncharacterized conser 98.8 6.2E-07 1.3E-11 94.0 19.6 277 119-508 181-478 (641)
205 PTZ00420 coronin; Provisional 98.8 4E-06 8.6E-11 94.6 27.2 160 154-413 75-249 (568)
206 COG3208 GrsT Predicted thioest 98.7 1.9E-07 4.2E-12 90.8 14.1 206 589-821 5-233 (244)
207 KOG2055 WD40 repeat protein [G 98.7 3.3E-07 7.2E-12 94.8 16.3 249 154-524 214-470 (514)
208 KOG0315 G-protein beta subunit 98.7 2E-06 4.4E-11 82.2 20.3 259 180-516 20-285 (311)
209 PF02239 Cytochrom_D1: Cytochr 98.7 2.7E-06 5.8E-11 92.1 24.3 262 157-522 40-348 (369)
210 KOG3847 Phospholipase A2 (plat 98.7 2.4E-07 5.3E-12 91.7 14.5 169 588-803 114-328 (399)
211 KOG0284 Polyadenylation factor 98.7 1.2E-07 2.5E-12 96.6 12.3 238 155-474 98-337 (464)
212 cd00707 Pancreat_lipase_like P 98.7 5.6E-08 1.2E-12 101.0 9.8 112 590-706 34-147 (275)
213 PF02273 Acyl_transf_2: Acyl t 98.7 3.7E-07 8E-12 87.6 14.2 222 570-805 9-239 (294)
214 KOG0286 G-protein beta subunit 98.7 1.3E-06 2.8E-11 85.5 17.6 274 104-471 63-342 (343)
215 COG2021 MET2 Homoserine acetyl 98.7 8.4E-07 1.8E-11 91.5 16.8 227 590-822 49-366 (368)
216 TIGR03230 lipo_lipase lipoprot 98.7 1.7E-07 3.7E-12 101.7 12.3 112 591-706 40-154 (442)
217 TIGR01849 PHB_depoly_PhaZ poly 98.7 5.9E-07 1.3E-11 96.4 16.2 202 611-824 120-406 (406)
218 COG2819 Predicted hydrolase of 98.6 3.2E-06 6.9E-11 83.9 19.8 211 572-822 19-259 (264)
219 KOG0305 Anaphase promoting com 98.6 2E-06 4.3E-11 93.3 18.8 253 138-473 206-460 (484)
220 PRK10115 protease 2; Provision 98.6 9.7E-06 2.1E-10 95.1 25.5 208 210-521 129-346 (686)
221 KOG0282 mRNA splicing factor [ 98.6 1E-06 2.3E-11 91.8 15.1 235 125-471 235-502 (503)
222 PF08450 SGL: SMP-30/Gluconola 98.6 1.5E-05 3.2E-10 82.1 23.9 236 158-507 4-245 (246)
223 KOG0305 Anaphase promoting com 98.6 2.9E-06 6.3E-11 92.0 18.7 267 156-508 180-452 (484)
224 TIGR02658 TTQ_MADH_Hv methylam 98.6 1.4E-05 3.1E-10 84.5 23.5 262 104-416 53-334 (352)
225 TIGR03502 lipase_Pla1_cef extr 98.6 2.4E-06 5.2E-11 98.7 19.1 100 590-691 447-575 (792)
226 KOG2314 Translation initiation 98.6 1.5E-05 3.3E-10 84.6 23.0 242 156-508 213-466 (698)
227 PLN00181 protein SPA1-RELATED; 98.6 1.2E-05 2.5E-10 97.5 26.0 196 154-413 484-691 (793)
228 KOG0263 Transcription initiati 98.6 4.9E-07 1.1E-11 99.8 12.6 192 211-475 455-648 (707)
229 KOG4497 Uncharacterized conser 98.6 2.3E-05 5.1E-10 78.0 22.9 293 154-511 92-426 (447)
230 KOG0273 Beta-transducin family 98.6 3.7E-06 8.1E-11 87.5 18.0 228 99-392 238-514 (524)
231 KOG0282 mRNA splicing factor [ 98.5 1.3E-06 2.7E-11 91.2 14.4 240 154-500 215-487 (503)
232 KOG0296 Angio-associated migra 98.5 1.4E-05 3.1E-10 80.7 20.0 159 154-416 65-224 (399)
233 KOG4497 Uncharacterized conser 98.5 1.7E-05 3.6E-10 79.0 20.0 139 102-317 14-152 (447)
234 KOG0296 Angio-associated migra 98.5 5.2E-05 1.1E-09 76.7 23.2 286 125-506 86-387 (399)
235 KOG2096 WD40 repeat protein [G 98.5 1.9E-05 4.2E-10 78.3 19.5 180 273-507 209-393 (420)
236 KOG0275 Conserved WD40 repeat- 98.5 1.8E-06 3.9E-11 85.2 12.2 203 154-416 264-471 (508)
237 PF03959 FSH1: Serine hydrolas 98.5 6.4E-07 1.4E-11 89.4 9.3 168 591-805 3-203 (212)
238 COG1073 Hydrolases of the alph 98.4 3E-06 6.6E-11 89.7 15.0 248 574-826 31-299 (299)
239 KOG0645 WD40 repeat protein [G 98.4 5.7E-05 1.2E-09 73.6 21.6 201 154-472 15-223 (312)
240 KOG1407 WD40 repeat protein [F 98.4 1.4E-05 3.1E-10 77.1 17.4 227 154-505 21-249 (313)
241 PRK04940 hypothetical protein; 98.4 6.1E-06 1.3E-10 77.7 14.8 119 671-822 60-178 (180)
242 KOG2314 Translation initiation 98.4 0.00015 3.2E-09 77.4 25.7 297 103-509 256-559 (698)
243 KOG0643 Translation initiation 98.4 6.3E-05 1.4E-09 73.1 21.0 234 156-505 13-249 (327)
244 KOG1009 Chromatin assembly com 98.4 1.1E-05 2.5E-10 82.5 17.0 164 154-388 66-247 (434)
245 KOG0284 Polyadenylation factor 98.4 4.1E-06 9E-11 85.6 12.6 241 155-475 140-381 (464)
246 PF11144 DUF2920: Protein of u 98.3 3.8E-05 8.2E-10 81.0 19.2 153 647-799 158-333 (403)
247 PF10230 DUF2305: Uncharacteri 98.3 1.3E-05 2.8E-10 82.8 15.4 111 592-706 2-122 (266)
248 KOG1553 Predicted alpha/beta h 98.3 1.8E-06 3.8E-11 86.6 8.5 130 569-710 220-349 (517)
249 KOG1274 WD40 repeat protein [G 98.3 7.6E-05 1.7E-09 84.1 21.5 174 271-506 74-251 (933)
250 PLN00181 protein SPA1-RELATED; 98.3 9.4E-05 2E-09 89.6 24.6 209 154-472 576-791 (793)
251 KOG2096 WD40 repeat protein [G 98.3 0.00012 2.5E-09 72.9 20.2 101 333-475 207-309 (420)
252 COG3243 PhaC Poly(3-hydroxyalk 98.3 1.5E-05 3.3E-10 83.5 14.6 214 576-803 93-370 (445)
253 PF07433 DUF1513: Protein of u 98.2 0.00095 2.1E-08 68.3 26.4 185 156-417 53-252 (305)
254 KOG2551 Phospholipase/carboxyh 98.2 5.6E-05 1.2E-09 72.3 15.9 122 655-825 92-221 (230)
255 KOG1274 WD40 repeat protein [G 98.2 9.2E-05 2E-09 83.5 19.9 154 156-413 99-263 (933)
256 PF02239 Cytochrom_D1: Cytochr 98.2 6.2E-05 1.4E-09 81.5 18.5 196 167-484 6-210 (369)
257 KOG1446 Histone H3 (Lys4) meth 98.2 0.00028 6.1E-09 70.5 20.8 237 104-417 22-267 (311)
258 KOG0283 WD40 repeat-containing 98.2 1.7E-05 3.8E-10 88.5 13.8 98 210-317 372-470 (712)
259 KOG1273 WD40 repeat protein [G 98.2 0.00017 3.6E-09 71.8 18.8 247 105-488 32-292 (405)
260 KOG2315 Predicted translation 98.2 0.00028 6E-09 75.7 21.8 240 101-463 130-374 (566)
261 KOG0278 Serine/threonine kinas 98.2 5.6E-05 1.2E-09 72.6 14.9 176 109-387 104-283 (334)
262 KOG1516 Carboxylesterase and r 98.2 2.5E-06 5.4E-11 98.8 7.2 127 576-706 97-232 (545)
263 COG3386 Gluconolactonase [Carb 98.2 0.00082 1.8E-08 70.3 24.7 188 275-512 87-280 (307)
264 PF12146 Hydrolase_4: Putative 98.1 5.4E-06 1.2E-10 67.6 6.2 57 573-635 1-57 (79)
265 COG5354 Uncharacterized protei 98.1 0.00044 9.5E-09 73.3 20.4 208 156-412 35-263 (561)
266 KOG0771 Prolactin regulatory e 98.1 5.2E-05 1.1E-09 78.3 13.3 208 155-475 146-355 (398)
267 KOG1445 Tumor-specific antigen 98.1 7.2E-05 1.6E-09 80.6 14.6 140 272-475 699-843 (1012)
268 PF11339 DUF3141: Protein of u 98.1 0.00024 5.3E-09 76.3 18.5 105 589-706 66-176 (581)
269 KOG0772 Uncharacterized conser 98.1 7.1E-05 1.5E-09 78.9 14.0 169 154-413 269-446 (641)
270 PF06028 DUF915: Alpha/beta hy 98.1 0.00011 2.4E-09 74.5 15.2 209 593-821 12-252 (255)
271 PF07433 DUF1513: Protein of u 98.0 0.0016 3.4E-08 66.8 23.1 237 155-486 6-257 (305)
272 KOG0288 WD40 repeat protein Ti 98.0 3.7E-05 8.1E-10 79.0 11.1 269 112-471 182-458 (459)
273 COG3545 Predicted esterase of 98.0 0.00054 1.2E-08 63.3 17.2 139 647-823 38-178 (181)
274 PF06433 Me-amine-dh_H: Methyl 98.0 0.0096 2.1E-07 61.8 28.1 264 156-524 38-323 (342)
275 KOG0639 Transducin-like enhanc 98.0 0.00015 3.3E-09 76.1 14.9 230 156-506 422-652 (705)
276 PF10647 Gmad1: Lipoprotein Lp 98.0 0.0005 1.1E-08 70.5 18.9 176 211-486 27-207 (253)
277 KOG3253 Predicted alpha/beta h 98.0 9E-05 1.9E-09 80.2 12.9 169 591-807 175-349 (784)
278 PLN02919 haloacid dehalogenase 97.9 0.019 4.1E-07 71.0 34.7 131 374-523 742-890 (1057)
279 KOG1524 WD40 repeat-containing 97.9 7.6E-05 1.7E-09 79.0 11.6 135 154-386 105-242 (737)
280 KOG0265 U5 snRNP-specific prot 97.9 0.00086 1.9E-08 66.5 17.2 233 104-413 55-297 (338)
281 KOG2315 Predicted translation 97.9 0.0016 3.5E-08 70.0 20.6 151 299-509 222-376 (566)
282 PF06057 VirJ: Bacterial virul 97.9 0.0005 1.1E-08 65.1 14.6 180 594-822 4-190 (192)
283 KOG0278 Serine/threonine kinas 97.8 0.00025 5.4E-09 68.3 12.5 195 156-476 103-299 (334)
284 COG3150 Predicted esterase [Ge 97.8 0.00037 8.1E-09 63.3 12.8 143 652-822 42-187 (191)
285 KOG0306 WD40-repeat-containing 97.8 0.00087 1.9E-08 74.2 18.1 236 155-503 414-650 (888)
286 KOG0639 Transducin-like enhanc 97.8 0.00058 1.3E-08 72.0 15.8 209 126-392 439-654 (705)
287 KOG0319 WD40-repeat-containing 97.8 0.00064 1.4E-08 75.1 16.8 155 154-342 63-221 (775)
288 PF10142 PhoPQ_related: PhoPQ- 97.8 0.00015 3.2E-09 77.0 11.4 151 665-825 166-321 (367)
289 KOG2931 Differentiation-relate 97.8 0.0015 3.2E-08 65.3 17.4 231 575-821 33-303 (326)
290 KOG0643 Translation initiation 97.8 0.0041 8.9E-08 60.8 19.9 148 154-393 53-212 (327)
291 KOG2139 WD40 repeat protein [G 97.8 0.00073 1.6E-08 68.6 15.3 190 273-522 120-312 (445)
292 KOG0640 mRNA cleavage stimulat 97.8 0.00057 1.2E-08 67.8 14.2 279 155-500 114-409 (430)
293 PF10647 Gmad1: Lipoprotein Lp 97.8 0.0029 6.3E-08 64.9 19.9 108 98-229 25-133 (253)
294 KOG0288 WD40 repeat protein Ti 97.8 0.00041 9E-09 71.5 13.3 269 154-505 176-449 (459)
295 COG5354 Uncharacterized protei 97.8 0.0037 7.9E-08 66.6 20.5 170 154-413 174-349 (561)
296 COG3391 Uncharacterized conser 97.7 0.011 2.5E-07 64.6 25.4 186 273-522 96-284 (381)
297 KOG0313 Microtubule binding pr 97.7 0.0033 7.1E-08 64.4 18.9 266 121-487 119-389 (423)
298 PF12048 DUF3530: Protein of u 97.7 0.0014 3.1E-08 69.0 17.4 207 573-824 71-309 (310)
299 PF07819 PGAP1: PGAP1-like pro 97.7 0.00028 6E-09 70.8 11.2 102 593-703 5-120 (225)
300 TIGR02171 Fb_sc_TIGR02171 Fibr 97.7 0.0029 6.4E-08 73.2 20.5 97 166-319 319-420 (912)
301 PF08450 SGL: SMP-30/Gluconola 97.7 0.0028 6E-08 65.1 18.8 137 272-476 21-164 (246)
302 KOG2048 WD40 repeat protein [G 97.7 0.0051 1.1E-07 67.7 20.8 157 154-416 26-188 (691)
303 KOG2106 Uncharacterized conser 97.7 0.016 3.5E-07 61.7 23.6 93 360-485 436-528 (626)
304 PF03096 Ndr: Ndr family; Int 97.7 0.00054 1.2E-08 69.4 12.5 231 575-822 10-277 (283)
305 KOG0641 WD40 repeat protein [G 97.7 0.024 5.3E-07 53.9 22.3 130 333-507 161-293 (350)
306 COG1770 PtrB Protease II [Amin 97.7 0.017 3.8E-07 64.3 24.8 214 211-523 132-350 (682)
307 PF00975 Thioesterase: Thioest 97.7 0.00027 5.9E-09 71.7 10.5 98 593-704 1-102 (229)
308 KOG0295 WD40 repeat-containing 97.6 0.00049 1.1E-08 69.9 11.6 211 154-416 151-368 (406)
309 PF05577 Peptidase_S28: Serine 97.6 0.00022 4.8E-09 79.9 10.3 112 592-707 29-149 (434)
310 KOG4840 Predicted hydrolases o 97.6 0.0024 5.3E-08 60.7 15.0 108 592-709 36-147 (299)
311 PF05705 DUF829: Eukaryotic pr 97.6 0.00092 2E-08 68.3 13.6 65 757-821 176-240 (240)
312 KOG2106 Uncharacterized conser 97.6 0.011 2.3E-07 62.9 20.9 83 272-390 427-510 (626)
313 COG4814 Uncharacterized protei 97.6 0.0041 8.9E-08 60.8 16.6 210 591-822 45-285 (288)
314 KOG0319 WD40-repeat-containing 97.6 0.0095 2.1E-07 66.2 21.3 322 123-519 167-535 (775)
315 PTZ00472 serine carboxypeptida 97.6 0.00081 1.7E-08 75.2 13.7 131 573-708 60-218 (462)
316 KOG0303 Actin-binding protein 97.6 0.005 1.1E-07 63.4 17.5 225 163-508 42-284 (472)
317 KOG0771 Prolactin regulatory e 97.6 0.0011 2.5E-08 68.7 13.2 170 273-506 166-343 (398)
318 PF05677 DUF818: Chlamydia CHL 97.6 0.00082 1.8E-08 68.9 12.0 111 572-692 120-236 (365)
319 KOG0283 WD40 repeat-containing 97.5 0.0021 4.6E-08 72.3 15.9 97 258-392 376-472 (712)
320 KOG1273 WD40 repeat protein [G 97.5 0.0042 9E-08 62.1 16.0 187 211-508 27-217 (405)
321 KOG1539 WD repeat protein [Gen 97.5 0.0028 6.1E-08 71.2 16.6 93 271-410 554-646 (910)
322 PF00151 Lipase: Lipase; Inte 97.5 0.0001 2.2E-09 78.2 5.3 114 589-706 68-187 (331)
323 KOG0647 mRNA export protein (c 97.5 0.027 5.9E-07 56.3 21.4 110 155-321 29-138 (347)
324 KOG0289 mRNA splicing factor [ 97.5 0.037 7.9E-07 58.0 22.8 208 154-485 262-471 (506)
325 KOG0264 Nucleosome remodeling 97.5 0.011 2.5E-07 62.0 19.4 152 273-474 250-404 (422)
326 PF01674 Lipase_2: Lipase (cla 97.5 0.00034 7.5E-09 69.1 8.1 89 595-691 4-95 (219)
327 KOG2394 WD40 protein DMR-N9 [G 97.5 0.0052 1.1E-07 65.8 16.8 74 370-474 289-362 (636)
328 KOG0310 Conserved WD40 repeat- 97.5 0.0063 1.4E-07 64.4 17.1 230 154-510 69-302 (487)
329 KOG2048 WD40 repeat protein [G 97.4 0.012 2.6E-07 64.9 19.6 157 103-342 389-547 (691)
330 KOG0268 Sof1-like rRNA process 97.4 0.0005 1.1E-08 69.7 8.3 138 271-475 208-346 (433)
331 PF06433 Me-amine-dh_H: Methyl 97.4 0.06 1.3E-06 56.1 23.3 133 296-488 185-332 (342)
332 PF07676 PD40: WD40-like Beta 97.4 0.00022 4.9E-09 49.3 4.0 38 365-408 2-39 (39)
333 KOG0299 U3 snoRNP-associated p 97.4 0.017 3.6E-07 60.9 19.1 97 402-506 346-444 (479)
334 KOG2919 Guanine nucleotide-bin 97.4 0.0062 1.3E-07 61.2 15.1 207 158-413 54-282 (406)
335 KOG0306 WD40-repeat-containing 97.4 0.0023 5E-08 71.0 13.2 193 154-392 455-655 (888)
336 COG4947 Uncharacterized protei 97.3 0.00027 5.9E-09 64.1 4.9 181 588-804 23-216 (227)
337 PF04762 IKI3: IKI3 family; I 97.3 0.13 2.9E-06 62.5 29.1 64 155-227 211-276 (928)
338 PLN02733 phosphatidylcholine-s 97.3 0.00047 1E-08 75.8 7.6 90 607-705 107-200 (440)
339 KOG0295 WD40 repeat-containing 97.3 0.0038 8.1E-08 63.7 13.2 251 211-523 112-366 (406)
340 KOG0277 Peroxisomal targeting 97.3 0.0042 9.1E-08 60.3 12.9 245 156-474 11-265 (311)
341 PF07519 Tannase: Tannase and 97.3 0.01 2.2E-07 66.5 18.0 127 575-708 16-152 (474)
342 KOG2919 Guanine nucleotide-bin 97.3 0.0045 9.8E-08 62.1 13.2 199 211-476 53-281 (406)
343 KOG0640 mRNA cleavage stimulat 97.3 0.0088 1.9E-07 59.7 14.8 208 104-418 171-389 (430)
344 PRK02888 nitrous-oxide reducta 97.3 0.028 6.2E-07 63.2 20.4 34 372-415 321-354 (635)
345 PF04762 IKI3: IKI3 family; I 97.3 0.074 1.6E-06 64.6 25.8 112 373-509 211-326 (928)
346 KOG0307 Vesicle coat complex C 97.3 0.0019 4.1E-08 75.2 11.6 248 156-474 67-327 (1049)
347 KOG2110 Uncharacterized conser 97.2 0.0025 5.5E-08 65.1 11.1 144 273-477 106-251 (391)
348 TIGR02171 Fb_sc_TIGR02171 Fibr 97.2 0.012 2.7E-07 68.2 17.8 92 273-394 329-422 (912)
349 COG1506 DAP2 Dipeptidyl aminop 97.2 0.044 9.5E-07 64.2 23.1 164 99-321 62-238 (620)
350 KOG3975 Uncharacterized conser 97.2 0.027 5.9E-07 55.0 16.8 62 756-821 239-300 (301)
351 KOG1332 Vesicle coat complex C 97.2 0.059 1.3E-06 52.4 18.6 230 164-506 22-275 (299)
352 KOG1524 WD40 repeat-containing 97.2 0.007 1.5E-07 64.7 13.6 95 211-387 108-202 (737)
353 KOG0289 mRNA splicing factor [ 97.2 0.014 3.1E-07 60.9 15.5 186 155-392 305-497 (506)
354 PLN02919 haloacid dehalogenase 97.2 0.076 1.7E-06 65.8 24.9 85 375-480 807-892 (1057)
355 KOG1063 RNA polymerase II elon 97.1 0.022 4.7E-07 63.1 17.5 112 209-392 527-639 (764)
356 KOG0316 Conserved WD40 repeat- 97.1 0.061 1.3E-06 51.9 18.3 198 154-419 18-220 (307)
357 COG3386 Gluconolactonase [Carb 97.1 0.012 2.5E-07 61.7 15.1 77 375-476 114-193 (307)
358 PF07676 PD40: WD40-like Beta 97.1 0.00079 1.7E-08 46.6 4.4 22 154-175 9-30 (39)
359 KOG0303 Actin-binding protein 97.1 0.029 6.3E-07 58.0 17.1 217 91-412 27-249 (472)
360 KOG0310 Conserved WD40 repeat- 97.1 0.025 5.5E-07 60.1 17.2 210 125-462 88-298 (487)
361 KOG0316 Conserved WD40 repeat- 97.1 0.028 6.2E-07 54.1 15.5 202 211-486 21-223 (307)
362 KOG4389 Acetylcholinesterase/B 97.1 0.00091 2E-08 71.1 5.9 126 576-707 121-256 (601)
363 PF05990 DUF900: Alpha/beta hy 97.0 0.0038 8.2E-08 63.1 10.1 112 590-707 16-138 (233)
364 KOG1007 WD repeat protein TSSC 97.0 0.049 1.1E-06 54.1 16.7 239 105-392 21-279 (370)
365 KOG2565 Predicted hydrolases o 97.0 0.0035 7.7E-08 64.4 9.3 117 572-699 132-257 (469)
366 KOG0650 WD40 repeat nucleolar 97.0 0.03 6.5E-07 60.9 16.6 266 154-517 401-678 (733)
367 KOG0294 WD40 repeat-containing 97.0 0.14 3.1E-06 51.7 20.0 142 108-317 44-187 (362)
368 KOG1523 Actin-related protein 97.0 0.037 8.1E-07 55.8 16.0 222 155-414 12-238 (361)
369 KOG1963 WD40 repeat protein [G 97.0 0.15 3.3E-06 58.3 22.5 67 141-228 244-313 (792)
370 KOG2394 WD40 protein DMR-N9 [G 97.0 0.00047 1E-08 73.4 2.9 92 154-261 291-384 (636)
371 COG3391 Uncharacterized conser 96.9 0.24 5.3E-06 54.3 24.0 209 156-483 76-290 (381)
372 KOG1538 Uncharacterized conser 96.9 0.075 1.6E-06 58.5 18.9 92 105-226 21-112 (1081)
373 COG3490 Uncharacterized protei 96.9 0.17 3.7E-06 50.6 19.6 42 271-317 138-180 (366)
374 PF00450 Peptidase_S10: Serine 96.9 0.0077 1.7E-07 67.2 11.9 134 572-708 22-183 (415)
375 KOG1063 RNA polymerase II elon 96.9 0.037 7.9E-07 61.3 16.1 109 101-229 530-640 (764)
376 KOG0277 Peroxisomal targeting 96.8 0.047 1E-06 53.3 15.0 175 271-508 36-211 (311)
377 KOG0308 Conserved WD40 repeat- 96.8 0.012 2.5E-07 64.6 12.2 157 209-413 75-244 (735)
378 KOG4378 Nuclear protein COP1 [ 96.8 0.098 2.1E-06 55.8 18.4 241 155-478 36-282 (673)
379 KOG1009 Chromatin assembly com 96.8 0.026 5.6E-07 58.6 13.9 62 296-393 125-187 (434)
380 PF15492 Nbas_N: Neuroblastoma 96.7 0.34 7.3E-06 48.7 20.5 56 159-226 3-62 (282)
381 KOG0285 Pleiotropic regulator 96.7 0.19 4.1E-06 51.6 18.8 199 154-417 152-353 (460)
382 KOG1445 Tumor-specific antigen 96.7 0.058 1.3E-06 59.0 16.1 75 294-414 128-202 (1012)
383 KOG1332 Vesicle coat complex C 96.7 0.15 3.3E-06 49.6 17.2 223 156-485 59-296 (299)
384 KOG0307 Vesicle coat complex C 96.7 0.012 2.5E-07 68.9 11.6 243 207-517 64-325 (1049)
385 KOG3967 Uncharacterized conser 96.7 0.026 5.6E-07 53.5 11.8 101 589-694 98-213 (297)
386 KOG2110 Uncharacterized conser 96.7 0.029 6.4E-07 57.6 12.9 107 154-318 130-238 (391)
387 COG3490 Uncharacterized protei 96.7 0.087 1.9E-06 52.5 15.6 185 157-417 117-315 (366)
388 KOG0641 WD40 repeat protein [G 96.6 0.59 1.3E-05 44.8 20.4 141 272-474 203-349 (350)
389 KOG0302 Ribosome Assembly prot 96.6 0.057 1.2E-06 55.6 14.7 152 265-475 226-379 (440)
390 KOG1539 WD repeat protein [Gen 96.6 0.03 6.6E-07 63.3 13.8 81 335-463 556-637 (910)
391 PF06977 SdiA-regulated: SdiA- 96.6 0.12 2.5E-06 52.5 16.7 171 154-413 22-202 (248)
392 KOG0269 WD40 repeat-containing 96.5 0.02 4.3E-07 64.2 11.6 146 121-342 150-295 (839)
393 KOG0269 WD40 repeat-containing 96.5 0.038 8.2E-07 62.0 13.7 144 271-477 154-297 (839)
394 KOG4328 WD40 protein [Function 96.5 0.33 7.2E-06 51.5 19.6 205 154-411 187-398 (498)
395 PF07082 DUF1350: Protein of u 96.5 0.085 1.8E-06 52.4 14.2 192 578-803 8-204 (250)
396 KOG0264 Nucleosome remodeling 96.4 0.16 3.5E-06 53.7 16.8 149 266-475 193-348 (422)
397 KOG0313 Microtubule binding pr 96.4 0.29 6.2E-06 50.8 18.0 99 271-415 279-379 (423)
398 KOG2182 Hydrolytic enzymes of 96.4 0.02 4.3E-07 61.8 10.0 127 576-706 71-207 (514)
399 PRK10252 entF enterobactin syn 96.3 0.03 6.5E-07 72.5 13.6 99 592-704 1068-1169(1296)
400 KOG0292 Vesicle coat complex C 96.2 0.27 5.8E-06 56.4 18.2 143 154-317 10-154 (1202)
401 KOG2183 Prolylcarboxypeptidase 96.2 0.021 4.6E-07 59.9 9.1 89 618-706 108-203 (492)
402 PF06977 SdiA-regulated: SdiA- 96.2 0.55 1.2E-05 47.6 19.1 176 211-481 25-205 (248)
403 KOG4378 Nuclear protein COP1 [ 96.2 0.077 1.7E-06 56.5 13.1 178 111-382 127-304 (673)
404 KOG2111 Uncharacterized conser 96.2 1.3 2.9E-05 45.0 21.1 100 335-476 159-258 (346)
405 COG4782 Uncharacterized protei 96.2 0.017 3.6E-07 60.0 8.1 113 590-708 114-236 (377)
406 PF08386 Abhydrolase_4: TAP-li 96.2 0.011 2.5E-07 51.1 5.9 59 759-822 34-92 (103)
407 KOG0299 U3 snoRNP-associated p 96.1 0.18 3.9E-06 53.4 15.1 61 155-229 204-266 (479)
408 PRK02888 nitrous-oxide reducta 96.1 0.41 8.8E-06 54.2 18.8 105 273-413 296-405 (635)
409 KOG1920 IkappaB kinase complex 96.1 3.1 6.8E-05 50.0 26.3 88 273-392 222-310 (1265)
410 KOG0646 WD40 repeat protein [G 96.1 0.054 1.2E-06 57.4 11.1 219 154-416 82-311 (476)
411 KOG0292 Vesicle coat complex C 96.1 0.48 1E-05 54.5 19.0 204 154-415 52-283 (1202)
412 COG3204 Uncharacterized protei 96.0 1.2 2.5E-05 45.2 19.7 173 211-484 89-271 (316)
413 KOG1007 WD repeat protein TSSC 96.0 0.56 1.2E-05 46.9 17.0 147 296-508 125-279 (370)
414 KOG0647 mRNA export protein (c 95.9 2.2 4.8E-05 43.1 21.3 164 122-317 45-217 (347)
415 KOG1920 IkappaB kinase complex 95.9 0.4 8.8E-06 57.1 18.1 61 156-230 71-132 (1265)
416 KOG4328 WD40 protein [Function 95.9 0.17 3.7E-06 53.6 13.7 172 272-507 209-389 (498)
417 KOG4283 Transcription-coupled 95.9 1.3 2.8E-05 44.5 18.9 110 271-416 166-280 (397)
418 PLN03016 sinapoylglucose-malat 95.8 0.083 1.8E-06 58.5 11.9 132 572-708 48-212 (433)
419 KOG0285 Pleiotropic regulator 95.8 0.26 5.7E-06 50.5 14.1 224 120-416 166-393 (460)
420 KOG1538 Uncharacterized conser 95.8 0.12 2.6E-06 57.0 12.5 60 155-228 14-74 (1081)
421 COG3319 Thioesterase domains o 95.7 0.042 9.1E-07 55.7 8.5 100 593-707 1-104 (257)
422 PF13360 PQQ_2: PQQ-like domai 95.7 2.7 5.8E-05 42.5 22.2 182 272-524 45-233 (238)
423 PLN02209 serine carboxypeptida 95.7 0.11 2.4E-06 57.6 12.2 133 572-708 50-214 (437)
424 TIGR03712 acc_sec_asp2 accesso 95.6 0.51 1.1E-05 51.3 16.5 124 571-714 273-398 (511)
425 KOG2321 WD40 repeat protein [G 95.6 1 2.3E-05 49.3 18.6 113 295-474 229-343 (703)
426 PF04053 Coatomer_WDAD: Coatom 95.6 0.74 1.6E-05 51.1 18.3 47 156-220 35-81 (443)
427 KOG1282 Serine carboxypeptidas 95.6 0.12 2.6E-06 56.8 11.9 135 571-708 54-215 (454)
428 COG1075 LipA Predicted acetylt 95.6 0.043 9.3E-07 58.8 8.4 99 594-706 61-164 (336)
429 KOG0302 Ribosome Assembly prot 95.6 0.36 7.8E-06 50.0 14.2 117 211-413 261-379 (440)
430 KOG4388 Hormone-sensitive lipa 95.5 0.035 7.7E-07 60.4 7.5 91 589-690 393-488 (880)
431 COG3204 Uncharacterized protei 95.5 2.3 5.1E-05 43.2 19.5 59 154-223 86-144 (316)
432 KOG1036 Mitotic spindle checkp 95.5 3.4 7.3E-05 42.0 20.3 104 154-321 14-117 (323)
433 KOG1408 WD40 repeat protein [F 95.4 0.12 2.5E-06 57.6 11.0 45 271-321 100-145 (1080)
434 KOG3724 Negative regulator of 95.1 0.068 1.5E-06 60.6 8.2 46 651-697 155-207 (973)
435 KOG0267 Microtubule severing p 95.1 0.076 1.7E-06 59.2 8.4 179 109-308 74-252 (825)
436 PF05057 DUF676: Putative seri 95.0 0.045 9.8E-07 54.7 6.0 21 670-690 77-97 (217)
437 COG2319 FOG: WD40 repeat [Gene 94.9 4.4 9.5E-05 44.1 22.7 143 273-484 178-322 (466)
438 PRK13614 lipoprotein LpqB; Pro 94.9 2.6 5.6E-05 48.2 20.1 89 373-484 435-526 (573)
439 PF11187 DUF2974: Protein of u 94.9 0.042 9.1E-07 54.9 5.4 49 656-704 69-121 (224)
440 KOG1523 Actin-related protein 94.8 0.89 1.9E-05 46.3 14.2 67 291-392 52-121 (361)
441 KOG0270 WD40 repeat-containing 94.8 3.6 7.9E-05 43.8 19.0 145 271-479 264-409 (463)
442 KOG4547 WD40 repeat-containing 94.4 2 4.4E-05 47.3 17.0 100 269-417 76-177 (541)
443 KOG0650 WD40 repeat nucleolar 94.4 3.5 7.6E-05 45.7 18.5 96 272-415 545-640 (733)
444 KOG2321 WD40 repeat protein [G 94.4 2.5 5.4E-05 46.5 17.2 116 373-521 230-346 (703)
445 KOG0294 WD40 repeat-containing 94.3 7 0.00015 40.0 22.9 83 272-392 106-189 (362)
446 KOG0274 Cdc4 and related F-box 94.1 2.2 4.8E-05 48.6 17.5 149 211-414 253-402 (537)
447 KOG1963 WD40 repeat protein [G 94.1 1 2.2E-05 51.9 14.5 94 156-308 208-306 (792)
448 PF02450 LCAT: Lecithin:choles 94.1 0.18 4E-06 55.3 8.7 82 609-705 66-159 (389)
449 KOG0321 WD40 repeat-containing 94.0 1.9 4E-05 48.0 15.7 37 272-308 121-158 (720)
450 KOG0267 Microtubule severing p 94.0 0.22 4.7E-06 55.8 8.8 96 273-416 92-188 (825)
451 KOG1408 WD40 repeat protein [F 93.9 2.2 4.8E-05 48.1 16.0 96 271-413 616-714 (1080)
452 KOG3621 WD40 repeat-containing 93.8 2.8 6E-05 47.4 16.7 89 124-225 52-142 (726)
453 COG2319 FOG: WD40 repeat [Gene 93.6 12 0.00027 40.4 24.0 77 273-386 134-213 (466)
454 KOG4283 Transcription-coupled 93.6 1.3 2.8E-05 44.5 12.3 156 268-487 61-232 (397)
455 PF11768 DUF3312: Protein of u 93.5 10 0.00022 42.4 20.2 95 273-415 236-332 (545)
456 KOG0268 Sof1-like rRNA process 93.5 0.64 1.4E-05 48.0 10.4 144 155-318 189-335 (433)
457 TIGR02604 Piru_Ver_Nterm putat 93.5 3 6.4E-05 45.5 16.7 68 296-385 125-197 (367)
458 KOG1551 Uncharacterized conser 93.2 0.35 7.6E-06 47.7 7.7 57 762-823 309-365 (371)
459 COG2939 Carboxypeptidase C (ca 93.2 0.37 8E-06 52.7 8.7 112 576-691 87-218 (498)
460 PRK13613 lipoprotein LpqB; Pro 93.1 6.1 0.00013 45.7 18.9 105 101-229 367-476 (599)
461 KOG0290 Conserved WD40 repeat- 93.0 8 0.00017 39.1 16.7 120 364-510 189-310 (364)
462 KOG1034 Transcriptional repres 92.9 0.83 1.8E-05 46.6 10.1 147 271-479 64-214 (385)
463 KOG0308 Conserved WD40 repeat- 92.8 0.58 1.2E-05 52.0 9.6 186 120-325 133-324 (735)
464 PRK13615 lipoprotein LpqB; Pro 92.7 7 0.00015 44.6 18.4 64 155-229 374-438 (557)
465 PRK13613 lipoprotein LpqB; Pro 92.7 4.9 0.00011 46.4 17.5 87 373-481 456-544 (599)
466 PF13449 Phytase-like: Esteras 92.7 8.8 0.00019 41.0 18.6 98 371-477 146-252 (326)
467 KOG1034 Transcriptional repres 92.6 3.6 7.8E-05 42.2 14.1 96 271-414 113-213 (385)
468 KOG2521 Uncharacterized conser 92.5 4 8.7E-05 43.3 15.0 225 589-824 36-290 (350)
469 KOG3914 WD repeat protein WDR4 92.4 3.3 7.1E-05 43.6 13.9 94 275-417 134-228 (390)
470 KOG0276 Vesicle coat complex C 92.4 11 0.00025 42.1 18.5 203 155-417 15-220 (794)
471 KOG0646 WD40 repeat protein [G 92.3 3.6 7.8E-05 44.1 14.2 39 273-317 103-142 (476)
472 KOG0321 WD40 repeat-containing 92.3 19 0.00042 40.4 20.1 60 154-225 101-162 (720)
473 TIGR02604 Piru_Ver_Nterm putat 92.3 10 0.00023 41.3 18.9 58 446-505 126-200 (367)
474 COG4257 Vgb Streptogramin lyas 92.3 6.5 0.00014 39.6 15.0 174 267-519 77-260 (353)
475 KOG4532 WD40-like repeat conta 92.2 12 0.00026 37.5 16.6 38 369-416 248-286 (344)
476 PF13360 PQQ_2: PQQ-like domai 92.1 1.6 3.4E-05 44.2 11.6 140 273-481 3-145 (238)
477 KOG2111 Uncharacterized conser 91.9 17 0.00036 37.4 20.4 85 271-392 157-247 (346)
478 PF01764 Lipase_3: Lipase (cla 91.9 0.36 7.8E-06 44.3 6.0 53 652-706 47-106 (140)
479 KOG2100 Dipeptidyl aminopeptid 91.7 32 0.00069 41.4 23.2 66 159-229 102-169 (755)
480 cd00741 Lipase Lipase. Lipase 91.6 0.4 8.6E-06 44.9 6.0 40 653-694 12-51 (153)
481 smart00824 PKS_TE Thioesterase 91.5 1.1 2.4E-05 43.9 9.6 84 608-704 13-100 (212)
482 TIGR03606 non_repeat_PQQ dehyd 91.0 21 0.00046 39.7 19.2 18 447-465 149-166 (454)
483 PLN02606 palmitoyl-protein thi 90.9 2.5 5.4E-05 43.7 11.2 103 590-704 25-130 (306)
484 PF11288 DUF3089: Protein of u 90.3 0.39 8.4E-06 46.8 4.6 70 622-692 46-116 (207)
485 PF02089 Palm_thioest: Palmito 90.2 1 2.2E-05 46.1 7.6 107 589-704 3-114 (279)
486 PF07995 GSDH: Glucose / Sorbo 90.1 5.7 0.00012 42.6 13.8 72 447-519 117-212 (331)
487 PF11768 DUF3312: Protein of u 90.1 6.3 0.00014 43.9 14.0 152 271-484 182-339 (545)
488 PRK13614 lipoprotein LpqB; Pro 90.0 15 0.00032 42.2 17.5 56 155-225 344-399 (573)
489 KOG0290 Conserved WD40 repeat- 89.9 23 0.00051 35.9 16.3 34 273-308 173-210 (364)
490 PF03088 Str_synth: Strictosid 89.9 1.2 2.6E-05 37.1 6.4 84 299-413 2-88 (89)
491 KOG0276 Vesicle coat complex C 89.8 39 0.00085 38.1 22.8 160 124-307 74-240 (794)
492 KOG0974 WD-repeat protein WDR6 89.6 10 0.00022 45.0 15.7 44 362-416 166-209 (967)
493 PF03283 PAE: Pectinacetyleste 89.6 0.22 4.7E-06 53.7 2.5 39 652-690 137-175 (361)
494 KOG3914 WD repeat protein WDR4 89.6 3.3 7.3E-05 43.6 10.9 73 211-285 155-227 (390)
495 KOG0274 Cdc4 and related F-box 89.0 25 0.00054 40.3 18.4 87 265-392 263-350 (537)
496 PLN02517 phosphatidylcholine-s 88.6 0.86 1.9E-05 51.2 6.2 75 609-690 157-232 (642)
497 TIGR03300 assembly_YfgL outer 88.6 41 0.0009 36.7 23.5 59 455-523 241-299 (377)
498 KOG0649 WD40 repeat protein [G 88.3 15 0.00033 36.2 13.5 172 301-524 17-189 (325)
499 COG4287 PqaA PhoPQ-activated p 88.3 0.94 2E-05 47.1 5.8 144 652-805 214-372 (507)
500 KOG0300 WD40 repeat-containing 87.9 15 0.00032 37.5 13.6 143 273-485 294-437 (481)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-49 Score=455.81 Aligned_cols=600 Identities=22% Similarity=0.313 Sum_probs=422.6
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
+..+|+|..++|..+..+...+.....+|+.+... ...++.. ..+..+.|||||+.++|.++.++...++
T Consensus 18 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~------~~~~~~~~spdg~~~~~~~~~~~~~~~l 87 (620)
T COG1506 18 PRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFG------GGVSELRWSPDGSVLAFVSTDGGRVAQL 87 (620)
T ss_pred cccCCCCceeEEeeccccccccccccceEEEeccc----ccccccC------CcccccccCCCCCEEEEEeccCCCcceE
Confidence 34468899999998887777788888999855321 2233333 4688999999999999998555456777
Q ss_pred EEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeec
Q 003363 182 FELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (826)
Q Consensus 182 ~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (826)
+.+..++ .......++ ..+.|+|+|+.+++.......... +. +......-..|..
T Consensus 88 ~l~~~~g---~~~~~~~~v----------~~~~~~~~g~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~ 142 (620)
T COG1506 88 YLVDVGG---LITKTAFGV----------SDARWSPDGDRIAFLTAEGASKRD---------GG---DHLFVDRLPVWFD 142 (620)
T ss_pred EEEecCC---ceeeeeccc----------ccceeCCCCCeEEEEecccccccC---------Cc---eeeeecccceeec
Confidence 7777444 222223333 688999999999994433221110 00 0000011111111
Q ss_pred CCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEE
Q 003363 262 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341 (826)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d 341 (826)
.-| ....+++++|.++ ....+ ......+..+.|.+|++. ++........ . ..-...+...
T Consensus 143 ~~g-----~~~~~l~~~d~~~-~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~-------~~~~~~~~~~ 202 (620)
T COG1506 143 GRG-----GERSDLYVVDIES-KLIKL--GLGNLDVVSFATDGDGRL----VASIRLDDDA-D-------PWVTNLYVLI 202 (620)
T ss_pred CCC-----CcccceEEEccCc-ccccc--cCCCCceeeeeeCCCCce----eEEeeecccc-C-------CceEeeEEEe
Confidence 111 2468899999877 44444 455556666666666775 5555432220 0 0111233333
Q ss_pred cccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccc
Q 003363 342 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 421 (826)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~ 421 (826)
. .++....++........+.|.+||+.+++....... | ......+++++...+....
T Consensus 203 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~d~--- 259 (620)
T COG1506 203 E-----------------GNGELESLTPGEGSISKLAFDADGKSIALLGTESDR--G-LAEGDFILLLDGELGEVDG--- 259 (620)
T ss_pred c-----------------CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCcc--C-ccccceEEEEeccccccce---
Confidence 2 467788888888889999999999999998887631 1 1233456666622222111
Q ss_pred ceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe-CCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCC
Q 003363 422 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD 500 (826)
Q Consensus 422 ~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~-~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~ 500 (826)
...... . .. +.....+.-++..++|.+.. .+...++.++..++....+..+.+ ....|+.+++
T Consensus 260 ----~~~~~~----~-~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~--~v~~f~~~~~ 323 (620)
T COG1506 260 ----DLSSGD----D-TR-----GAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDG--GVPGFDVDGR 323 (620)
T ss_pred ----eeccCC----c-cc-----CcHHhccccCCCcEEEEEecCCCceEEEEEeccCCceeeecCCCc--eEEEEeeCCC
Confidence 000000 0 00 00111122345556666665 677788888765555555544434 4456777999
Q ss_pred EEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhcccccceeeeeecccCceeeeccCCCeeEEEEE
Q 003363 501 NIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIF 580 (826)
Q Consensus 501 ~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 580 (826)
.+++..+++..|+++++.+.. .. ..+. ..+. ..+....+ . +...+.+...+|.++++|+
T Consensus 324 ~~~~~~s~~~~p~~i~~~~~~-~~--~~~~---------~~~~---~~~~~~~~-----~-~~e~~~~~~~dG~~i~~~l 382 (620)
T COG1506 324 KLALAYSSPTEPPEIYLYDRG-EE--AKLT---------SSNN---SGLKKVKL-----A-EPEPVTYKSNDGETIHGWL 382 (620)
T ss_pred EEEEEecCCCCccceEEEcCC-Cc--eEEe---------eccc---cccccccc-----C-CceEEEEEcCCCCEEEEEE
Confidence 999999999999999998862 11 1110 0011 11111111 1 1112245566889999999
Q ss_pred EecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHH
Q 003363 581 VSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID 660 (826)
Q Consensus 581 ~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~ 660 (826)
+.|.++++.+++|+||++||||.......+....+.|+++||+|+.+||||+.|||++|.+....+++..+.+|+.++++
T Consensus 383 ~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~ 462 (620)
T COG1506 383 YKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVD 462 (620)
T ss_pred ecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHH
Confidence 99999988888999999999998887778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCCh
Q 003363 661 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSV 740 (826)
Q Consensus 661 ~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (826)
++.+.+.+|++||+|+|+|+||+|+++++++.| .|+++++..+.+++..+........+........ .+.+
T Consensus 463 ~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 533 (620)
T COG1506 463 ALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGG--------GPPE 533 (620)
T ss_pred HHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhCC--------Cccc
Confidence 999999999999999999999999999999877 8999999999888887776665544433322221 1212
Q ss_pred hhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 003363 741 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 820 (826)
Q Consensus 741 ~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w 820 (826)
+.+.+...||+.++.++++|+|||||+.|.+||.+|+++++++|+.+|+++++++||+++|++..+++....++.+++|
T Consensus 534 -~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~ 612 (620)
T COG1506 534 -DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDW 612 (620)
T ss_pred -ChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcC
Q 003363 821 FKKYCK 826 (826)
Q Consensus 821 ~~~~l~ 826 (826)
|++|++
T Consensus 613 ~~~~~~ 618 (620)
T COG1506 613 FKRHLK 618 (620)
T ss_pred HHHHhc
Confidence 999985
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=3.9e-42 Score=397.39 Aligned_cols=529 Identities=15% Similarity=0.135 Sum_probs=359.6
Q ss_pred cEEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~-~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.....|||||++|||..+..+ +..+++.+. .+|... ...+.... ..+.|++||+.|+|...+....
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~~~----------~~~~w~~D~~~~~y~~~~~~~~- 196 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDNVE----------PSFVWANDSWTFYYVRKHPVTL- 196 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccCcc----------eEEEEeeCCCEEEEEEecCCCC-
Confidence 556789999999999977653 334566666 344311 01111111 3589999999999987743100
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCC--ceEeccCCCCCCccceEEEee-CCCCCc
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPKSLSVGQVVWAP-LNEGLH 310 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g--~~~~l~~~~~~~~~~~~~wSP-Dg~~~~ 310 (826)
...+||++++.++ +-+.|.. ..+....-..|.+ |++.
T Consensus 197 -------------------------------------~~~~v~~h~lgt~~~~d~lv~~-e~~~~~~~~~~~s~d~~~-- 236 (686)
T PRK10115 197 -------------------------------------LPYQVWRHTIGTPASQDELVYE-EKDDTFYVSLHKTTSKHY-- 236 (686)
T ss_pred -------------------------------------CCCEEEEEECCCChhHCeEEEe-eCCCCEEEEEEEcCCCCE--
Confidence 2368999999988 4444421 1111112133545 8887
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC-CccccCceecCCCCEEEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~-~~~~~~p~~SpDG~~l~f~ 389 (826)
++..+.. +..+.+++++++. ..++.+.+... ...... +...|..|++.
T Consensus 237 --l~i~~~~------------~~~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~--~~~~~~~ly~~ 285 (686)
T PRK10115 237 --VVIHLAS------------ATTSEVLLLDAEL---------------ADAEPFVFLPRRKDHEYS--LDHYQHRFYLR 285 (686)
T ss_pred --EEEEEEC------------CccccEEEEECcC---------------CCCCceEEEECCCCCEEE--EEeCCCEEEEE
Confidence 7654422 2234677777421 22333333222 222222 22335667666
Q ss_pred eccCCCCCCCCcccceEEEEeCCC-CCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeE
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (826)
++.+ .....|..+++.. +..+ .+++ ...+. .+..+.|+ ++.|++....++..
T Consensus 286 tn~~-------~~~~~l~~~~~~~~~~~~-------~l~~---~~~~~--------~i~~~~~~--~~~l~~~~~~~g~~ 338 (686)
T PRK10115 286 SNRH-------GKNFGLYRTRVRDEQQWE-------ELIP---PRENI--------MLEGFTLF--TDWLVVEERQRGLT 338 (686)
T ss_pred EcCC-------CCCceEEEecCCCcccCe-------EEEC---CCCCC--------EEEEEEEE--CCEEEEEEEeCCEE
Confidence 6653 2346788887753 1111 1111 10010 12234455 55799998889999
Q ss_pred EEEEEECCCCcEEEec-CCCCCeeeEEEe--ecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhh
Q 003363 469 VIISVNVSSGELLRIT-PAESNFSWSLLT--LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKV 545 (826)
Q Consensus 469 ~l~~vdl~tg~~~~lt-~~~~~~~~~~~s--~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (826)
.++.+++.++++..|. ..........++ ++++.+++..+++.+|+++|.++..+++ ...+ . ..+.
T Consensus 339 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~-~~~l--~-------~~~~-- 406 (686)
T PRK10115 339 SLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE-RRVL--K-------QTEV-- 406 (686)
T ss_pred EEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc-EEEE--E-------ecCC--
Confidence 9999998878888877 333222322334 5567899999999999999999976543 1111 1 1110
Q ss_pred hhcccccceeeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEE
Q 003363 546 KSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLL 625 (826)
Q Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl 625 (826)
..+....+..+.+ .++..||.+++++++.+++....++.|+||++|||++......|....+.|+++||+|+
T Consensus 407 -~~~~~~~~~~e~v-------~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~ 478 (686)
T PRK10115 407 -PGFDAANYRSEHL-------WITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYA 478 (686)
T ss_pred -CCcCccccEEEEE-------EEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEE
Confidence 0111122223332 45677889999977765543345677999999999998877889988999999999999
Q ss_pred EECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc
Q 003363 626 IVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (826)
Q Consensus 626 ~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 705 (826)
.+|+||++|+|+.|++.....++..+++|+++++++|++++++|++|++++|.|+||+++.+++.++|++|+|+|+..|+
T Consensus 479 ~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~ 558 (686)
T PRK10115 479 IVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPF 558 (686)
T ss_pred EEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCc
Confidence 99999999999999998777777889999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCC-CchhhhhccCcCCccCCCCCC-hhhHHHHhhcCcccccCCCCCc-EEEEEeCCCCCCCcHHHHHHH
Q 003363 706 CNLALMVGTTDIP-DWCYVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTP-TIFLLGAQDLRVPVSNGLQYA 782 (826)
Q Consensus 706 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P-vLii~G~~D~~vp~~~~~~~~ 782 (826)
+|+..+.....++ .+...+.+|. |. .+..+.+.+.||+.++.+++.| +||+||.+|.+||+.++.+++
T Consensus 559 ~D~~~~~~~~~~p~~~~~~~e~G~---------p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~ 629 (686)
T PRK10115 559 VDVVTTMLDESIPLTTGEFEEWGN---------PQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWV 629 (686)
T ss_pred hhHhhhcccCCCCCChhHHHHhCC---------CCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHHHH
Confidence 9998765443333 3333344443 33 3445666789999999999999 677799999999999999999
Q ss_pred HHHHhCCCCEEEEEe---CCCCCCCCCCCCHHHHHHH---HHHHHHHHc
Q 003363 783 RALREKGVETKVIVF---PNDVHGIERPQSDFESFLN---IGLWFKKYC 825 (826)
Q Consensus 783 ~~l~~~g~~~~~~~~---p~~~H~~~~~~~~~~~~~~---i~~w~~~~l 825 (826)
++|++++++++++++ +++||+. ..+..+.+++ ...|+-..+
T Consensus 630 a~Lr~~~~~~~~vl~~~~~~~GHg~--~~~r~~~~~~~A~~~aFl~~~~ 676 (686)
T PRK10115 630 AKLRELKTDDHLLLLCTDMDSGHGG--KSGRFKSYEGVAMEYAFLIALA 676 (686)
T ss_pred HHHHhcCCCCceEEEEecCCCCCCC--CcCHHHHHHHHHHHHHHHHHHh
Confidence 999999999888888 9999984 3444444443 455665544
No 3
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-37 Score=357.27 Aligned_cols=613 Identities=18% Similarity=0.232 Sum_probs=395.2
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
..|||.+.+.+..+....-.........++.+..+. .+... ..+........|||.|++++|+.+++ ++
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~wsp~~~~l~yv~~~n-----iy 171 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGE----KLHPP--EYEGSKIQYASWSPLGNDLAYVLHNN-----IY 171 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCC----cccCc--ccCCCeeEEEEEcCCCCEEEEEEecc-----cc
Confidence 557898888877654433444444555555554332 11111 11113357899999999999998765 21
Q ss_pred EEe-cCCceeEEEe------cCCCccccccCCCcc---cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCC
Q 003363 183 ELW-SQSQLEKEFH------VPQTVHGSVYADGWF---EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 252 (826)
Q Consensus 183 ~i~-~~~~~~~~~~------~~~~~~g~v~~~~~~---~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (826)
.-. ......+++. .-.+..+++|.++.+ ..+.|||||..++|...............+... ...+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~dt~V~~~~~~~~~~~-~~yp~~~~ 250 (755)
T KOG2100|consen 172 YQSSEEDEDVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFNDTKVETINLPGYTDD-DQYPKSTN 250 (755)
T ss_pred cccCcCCCceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEecccccceEEecccccc-ccCcccce
Confidence 111 1111111111 123566778886644 467799999999998876543211100111111 01110001
Q ss_pred CCCcceeecCCCccCCCccCceEEEEEccCCceEecc----CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeee
Q 003363 253 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 328 (826)
Q Consensus 253 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~----~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~ 328 (826)
..|... |. ......|+++|........+. .......+..+.|.-+.+ +.++..
T Consensus 251 ----~~ypk~-g~---~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-----~~~~~~---------- 307 (755)
T KOG2100|consen 251 ----FHYPKA-GA---PNPAVSLFVVDLHDPPRLGIPPPTNQRSGEYYVTNVKWDTTEK-----VLVVWT---------- 307 (755)
T ss_pred ----eecCCC-CC---CCCeEEEEEEeCCCceeeccCCccccccCceEEEEEEEecCcc-----EEEEEE----------
Confidence 111111 11 113467888885544333211 011223455677887755 444321
Q ss_pred eeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc----eecCCC-Ccc--ccCceecCCCCEEEEEeccCCCCCCCCc
Q 003363 329 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV----VNLTES-ISS--AFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (826)
Q Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~Lt~~-~~~--~~~p~~SpDG~~l~f~s~~~~~~~g~~~ 401 (826)
+|...+-...+... . +.+ +....+ ... ...|.++.|+....+...... +
T Consensus 308 ---~r~~~~~~~~~cd~--------------~-~~~~~~~~~~~~~~W~~~~~~~~~~~~d~~~~~~~~~~~~---~--- 363 (755)
T KOG2100|consen 308 ---NREQNISVETLCDT--------------P-GICRVVYEESSDGGWVEHQNVEPVFSSDGSSYLKVDSVSD---G--- 363 (755)
T ss_pred ---ccCCCeeeeEEecC--------------c-ccceeeEeccccccccccccccceEeecCCceeEEEeecc---C---
Confidence 12222222222110 1 111 011111 111 235889999865555544431 1
Q ss_pred ccceEEEEeCCCC-CCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe--CCeEEEEEEECCCC
Q 003363 402 ATDSLHRIDWPTN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSG 478 (826)
Q Consensus 402 ~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~--~~~~~l~~vdl~tg 478 (826)
...++..+.+..+ ..+.++.+...+..+ +.|+.|++.++|.+.. .+..+||.+++.++
T Consensus 364 ~~~hi~~~~~~~~~~~~~lt~g~w~v~~i-------------------~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~ 424 (755)
T KOG2100|consen 364 GYNHIAYLKLSNGSEPRMLTSGNWEVTSI-------------------LGYDKDSNRIYFDAYEEDPSERHLYSISLGSG 424 (755)
T ss_pred CEEEEEEEEcCCCCccccccccceEEEEe-------------------ccccCCCceEEEEecCCCCCceEEEEEEcccc
Confidence 1467777776665 445566666655432 2355788899999887 47789999999998
Q ss_pred cEEEecCCCC----CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhcccccce
Q 003363 479 ELLRITPAES----NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQF 554 (826)
Q Consensus 479 ~~~~lt~~~~----~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 554 (826)
....++.... .+....++...+.++..+..|..|.. .+.......... +.. .+.|..+++.+....+
T Consensus 425 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~-~~~~~~~~~~~~---~~~-----Le~n~~~~~~~~~~~~ 495 (755)
T KOG2100|consen 425 TVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDG-QLTRHSSKNSKT---IVV-----LETNEELKKTIENVAL 495 (755)
T ss_pred ccccccccCCCCcceEEEEecCCcccEEEEEccCCCCCcc-eeeccccccceE---EEE-----eccChhhHHHhhcccC
Confidence 8888776554 23334555566788888888888864 222222221111 111 2345555555543322
Q ss_pred eeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc---cchHHHHHHHHCCcEEEEECCCC
Q 003363 555 SIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRG 631 (826)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~---~~~~~~~~la~~G~~Vl~~d~rG 631 (826)
|..++. ....+|...+..++.|+++++.+++|++|.+||||.++... ........+...|++|+.+|+||
T Consensus 496 -----p~~~~~--~i~~~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RG 568 (755)
T KOG2100|consen 496 -----PIVEFG--KIEIDGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRG 568 (755)
T ss_pred -----CcceeE--EEEeccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCC
Confidence 222211 11227788999999999999999999999999999754332 22334456789999999999999
Q ss_pred CCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCC-CceeEEEecCCccchhh
Q 003363 632 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP-DKFVAAAARNPLCNLAL 710 (826)
Q Consensus 632 ~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p-~~~~a~v~~~p~~~~~~ 710 (826)
++++|..++..+++++|..+++|+..+++++++++++|.+||+|+|+|+||+++++++.+.+ +.|+|+++++|++|+.
T Consensus 569 s~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~- 647 (755)
T KOG2100|consen 569 SGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL- 647 (755)
T ss_pred cCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-
Confidence 99999999999999999999999999999999999999999999999999999999999987 7899999999999987
Q ss_pred hccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcE-EEEEeCCCCCCCcHHHHHHHHHHHhCC
Q 003363 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT-IFLLGAQDLRVPVSNGLQYARALREKG 789 (826)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~Pv-Lii~G~~D~~vp~~~~~~~~~~l~~~g 789 (826)
++...... ++++.+. ++...|.+.++...+..++.|. |++||+.|..|+++|+.+++++|+.+|
T Consensus 648 ~yds~~te--------------rymg~p~-~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~g 712 (755)
T KOG2100|consen 648 YYDSTYTE--------------RYMGLPS-ENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAG 712 (755)
T ss_pred eecccccH--------------hhcCCCc-cccchhhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCC
Confidence 44333222 2333443 2223378888999999988775 999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 790 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 790 ~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+++++++||+++|++...+.....+..+..||...+
T Consensus 713 v~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 713 VPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred CceEEEEeCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 999999999999999988887899999999998654
No 4
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-34 Score=298.94 Aligned_cols=340 Identities=19% Similarity=0.262 Sum_probs=262.9
Q ss_pred CCEEEEEEEeCC--eEEEEEEECC-CCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeee
Q 003363 455 GCTMLLSSIWGS--SQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 531 (826)
Q Consensus 455 g~~l~~~~~~~~--~~~l~~vdl~-tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~ 531 (826)
.+.+||....++ ..+||.+... .|++.+||.....+.. .++.+=+.++...++-..|+.+.++.+...+..
T Consensus 515 ~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~-~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~----- 588 (867)
T KOG2281|consen 515 RKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHSC-ELDQQCDHFVSYYSSVGSPPCVSLYSLSWPEND----- 588 (867)
T ss_pred ceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccch-hhhhhhhhHhhhhhcCCCCceEEEEeccCCccC-----
Confidence 356777766554 4589999887 8999999987654432 355555567888899999999999988765411
Q ss_pred eccCCCCCCCchhhhhcccccceeeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cc
Q 003363 532 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY 610 (826)
Q Consensus 532 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~ 610 (826)
|+........-+++...-...-.|. .-+.+....|..+.|.+|+|.++++++++|+|++++|||..+... .|
T Consensus 589 -----~l~~q~~~~~~l~~~~~~~Pdy~p~--eif~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsf 661 (867)
T KOG2281|consen 589 -----PLPKQVSFWAILVSGAPPPPDYVPP--EIFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSF 661 (867)
T ss_pred -----cccchhhHHHHHHhcCCCCCccCCh--hheeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccc
Confidence 1111111111111111111111111 112345567889999999999999999999999999999876432 23
Q ss_pred h----HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC-CCCCCcEEEEEecchHHHH
Q 003363 611 S----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLT 685 (826)
Q Consensus 611 ~----~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-~~d~~rv~l~G~S~GG~~a 685 (826)
. .....|+++||.|+.+|.||+.-.|..|...+..++|..+++|...++++|.++. ++|.+||+|.|||+|||++
T Consensus 662 kgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLS 741 (867)
T KOG2281|consen 662 KGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLS 741 (867)
T ss_pred cceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHH
Confidence 2 2355789999999999999999999999999999999999999999999999974 8999999999999999999
Q ss_pred HHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCC---CcE
Q 003363 686 THLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK---TPT 762 (826)
Q Consensus 686 ~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~---~Pv 762 (826)
+++++++|+.|+++|+.+|+.+|..+ .....++|++.|. .+...|...|...++.++. -.+
T Consensus 742 lm~L~~~P~IfrvAIAGapVT~W~~Y---------------DTgYTERYMg~P~-~nE~gY~agSV~~~VeklpdepnRL 805 (867)
T KOG2281|consen 742 LMGLAQYPNIFRVAIAGAPVTDWRLY---------------DTGYTERYMGYPD-NNEHGYGAGSVAGHVEKLPDEPNRL 805 (867)
T ss_pred HHHhhcCcceeeEEeccCcceeeeee---------------cccchhhhcCCCc-cchhcccchhHHHHHhhCCCCCceE
Confidence 99999999999999999999986543 2223456777774 2335666667767777663 459
Q ss_pred EEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 763 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 763 Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
|++||--|+.|.+.+.-.+..+|.++|++.++.+||++.|++..++.....-.+++.|+.+
T Consensus 806 lLvHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 806 LLVHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred EEEecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988888889999876
No 5
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.97 E-value=1.3e-30 Score=262.39 Aligned_cols=206 Identities=34% Similarity=0.583 Sum_probs=176.0
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHH
Q 003363 609 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 688 (826)
Q Consensus 609 ~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~ 688 (826)
.|+...++|+++||+|+.+||||++++|..+.......++..+++|+.++++++++++.+|++||+|+|+|+||++++.+
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeEEEecCCccchhhhccCCCCCCchh--hhhccCcCCccCCCCCChhhHHHHhhcCcccccCC--CCCcEEE
Q 003363 689 IGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK--VKTPTIF 764 (826)
Q Consensus 689 a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--i~~PvLi 764 (826)
+.++|++|+++|+.+|+.++..+....+. +.. ...++. ..+..+.+...+|+..+.+ +++|+||
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~~~~~~~~P~li 149 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSYYGTTDI--YTKAEYLEYGD----------PWDNPEFYRELSPISPADNVQIKPPVLI 149 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCSBHHTCC--HHHGHHHHHSS----------TTTSHHHHHHHHHGGGGGGCGGGSEEEE
T ss_pred hcccceeeeeeeccceecchhcccccccc--cccccccccCc----------cchhhhhhhhhccccccccccCCCCEEE
Confidence 99999999999999999998766554433 111 111111 1234566777888888888 8999999
Q ss_pred EEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 765 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 765 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+||++|.+||+.++.+++++|+++|+++++++||+++|++..++...+++.++++||+++|+
T Consensus 150 ~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 150 IHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp EEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred EccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998888888999999999999986
No 6
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.96 E-value=3.3e-27 Score=260.38 Aligned_cols=285 Identities=16% Similarity=0.200 Sum_probs=212.8
Q ss_pred HHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeC
Q 003363 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPS 162 (826)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~S 162 (826)
-.++++++..+.+. +++|+|+....+...+++++.||+++. +|++.++||... .....|+||
T Consensus 132 D~~~~~~tg~~g~~-----------~~~iayv~~~~~~~~~~~~~~l~~~d~--dG~~~~~lt~~~-----~~~~sP~wS 193 (428)
T PRK01029 132 DTIHYALTGVPGIS-----------SGKIIFSLSTTNSDTELKQGELWSVDY--DGQNLRPLTQEH-----SLSITPTWM 193 (428)
T ss_pred HHHHHHHcCCCccc-----------cCEEEEEEeeCCcccccccceEEEEcC--CCCCceEcccCC-----CCcccceEc
Confidence 34566666666555 477889988877676677889999875 456778888765 447889999
Q ss_pred CCCCe--EEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 003363 163 PSGSK--LLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (826)
Q Consensus 163 PdG~~--la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~ 239 (826)
|||++ ++|++..+ +..++|.++ .+++.++++...... ..++|||||++|||++...
T Consensus 194 PDG~~~~~~y~S~~~-g~~~I~~~~l~~g~~~~lt~~~g~~----------~~p~wSPDG~~Laf~s~~~---------- 252 (428)
T PRK01029 194 HIGSGFPYLYVSYKL-GVPKIFLGSLENPAGKKILALQGNQ----------LMPTFSPRKKLLAFISDRY---------- 252 (428)
T ss_pred cCCCceEEEEEEccC-CCceEEEEECCCCCceEeecCCCCc----------cceEECCCCCEEEEEECCC----------
Confidence 99998 55687765 678999999 778888888766554 6799999999999987542
Q ss_pred CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEE--EEccC---CceEeccCCCCC-CccceEEEeeCCCCCccEE
Q 003363 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV--ININS---GEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v--~d~~~---g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~l 313 (826)
+..+||+ +++++ ++.+++ +... .....++|||||+. |
T Consensus 253 -------------------------------g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~----L 295 (428)
T PRK01029 253 -------------------------------GNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR----L 295 (428)
T ss_pred -------------------------------CCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE----E
Confidence 2245666 45553 566777 3333 23467899999999 9
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
+|+++.. ...+||.++++. .++..++|+........|.|||||++|+|.+.+.
T Consensus 296 af~s~~~------------g~~~ly~~~~~~---------------~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 296 VFVSNKD------------GRPRIYIMQIDP---------------EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred EEEECCC------------CCceEEEEECcc---------------cccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence 9998432 223799998731 2355778887766778999999999999998764
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
+..+|+++|+.+++.+.++.... ....+.|+|||+.|+|.+...+...||.+
T Consensus 349 --------g~~~I~v~dl~~g~~~~Lt~~~~--------------------~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 349 --------GVRQICVYDLATGRDYQLTTSPE--------------------NKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred --------CCcEEEEEECCCCCeEEccCCCC--------------------CccceEECCCCCEEEEEECCCCCceEEEE
Confidence 24689999999887765553210 12367899999999998887788899999
Q ss_pred ECCCCcEEEecCCCCCeeeEEEeec
Q 003363 474 NVSSGELLRITPAESNFSWSLLTLD 498 (826)
Q Consensus 474 dl~tg~~~~lt~~~~~~~~~~~s~d 498 (826)
|+++++.++|+...+....+.|+|-
T Consensus 401 dl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 401 SLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ECCCCCEEEeecCCCcccCceecCC
Confidence 9999999999876665556677764
No 7
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.96 E-value=6.3e-24 Score=228.15 Aligned_cols=323 Identities=17% Similarity=0.167 Sum_probs=244.0
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCee-eEEE--eecCCEEEEEEeCCCCCCeEEEEeecccCCCceeee
Q 003363 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFS-WSLL--TLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 531 (826)
Q Consensus 455 g~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~-~~~~--s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~ 531 (826)
.++|++.-...+...++..+..+++..-|..++..+. +... ..+...|.+..+++++|.+++-+|+.+++ .+.+.-
T Consensus 327 ~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~e-r~~Lkq 405 (682)
T COG1770 327 ADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGE-RTLLKQ 405 (682)
T ss_pred ccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCc-EEEEEe
Confidence 4568777777888899999999999888876655222 1122 33677899999999999999999998765 111111
Q ss_pred eccCCCCCC-CchhhhhcccccceeeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc
Q 003363 532 LNVSSPISR-CPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY 610 (826)
Q Consensus 532 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~ 610 (826)
. ++.. +++ .......+. .+..+|..+...++.-++.+-.++.|++|+.+|..+......|
T Consensus 406 q----eV~~g~dp--------~~Y~s~riw-------a~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~F 466 (682)
T COG1770 406 Q----EVPGGFDP--------EDYVSRRIW-------ATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSF 466 (682)
T ss_pred c----cCCCCCCh--------hHeEEEEEE-------EEcCCCcEeeEEEEEecccCCCCCCcEEEEEeccccccCCcCc
Confidence 1 1211 222 122222221 1235777787778877776678899999999998887777788
Q ss_pred hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHH
Q 003363 611 SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 690 (826)
Q Consensus 611 ~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~ 690 (826)
+...-.|..+||+..+...||.+.-|+.|.++.......+.+.|++++.++|+++++.++++|+++|.|+||.++..++.
T Consensus 467 s~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N 546 (682)
T COG1770 467 SIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVAN 546 (682)
T ss_pred ccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHh
Confidence 87667788999999999999999999999988777777788999999999999999999999999999999999999999
Q ss_pred hCCCceeEEEecCCccchhhhccCCCCCC-chhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCC-CcEEEEEeC
Q 003363 691 QAPDKFVAAAARNPLCNLALMVGTTDIPD-WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGA 768 (826)
Q Consensus 691 ~~p~~~~a~v~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~PvLii~G~ 768 (826)
..|++|+++|+..|++|...-.....+|- -.-..++|. ....+..+.+...||+.++..-. +|+|++.|.
T Consensus 547 ~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGN--------P~d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl 618 (682)
T COG1770 547 MAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGN--------PLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGL 618 (682)
T ss_pred hChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCC--------cCCHHHHHHHhhcCchhccccCCCCceEEEccc
Confidence 99999999999999999753322222221 001122232 23456677788899999988754 679999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCC---CEEEEEeCCCCCCCC
Q 003363 769 QDLRVPVSNGLQYARALREKGV---ETKVIVFPNDVHGIE 805 (826)
Q Consensus 769 ~D~~vp~~~~~~~~~~l~~~g~---~~~~~~~p~~~H~~~ 805 (826)
.|++|.+.+..++.++|+..+. ++-+..--++||+-.
T Consensus 619 ~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~ 658 (682)
T COG1770 619 NDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGA 658 (682)
T ss_pred cCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCC
Confidence 9999999999999999998754 455555568999754
No 8
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.95 E-value=8.5e-25 Score=231.54 Aligned_cols=344 Identities=17% Similarity=0.222 Sum_probs=261.5
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC-CCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccCCC
Q 003363 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANK 526 (826)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~~~ 526 (826)
.+.+..| .|+...-.+-..++...+..+-+.+.|.... +.......+.+|+.+++..++.++|++++..++.+.+ .
T Consensus 301 ~v~tt~~--~~va~~l~nv~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e-L 377 (648)
T COG1505 301 QVVTTKD--KLVAGTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGE-L 377 (648)
T ss_pred eeEEEcC--eEEeeeehhccceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCce-e
Confidence 4445544 2544444343335666666554444554332 2233223445788899999999999999999987664 1
Q ss_pred ceeeeeccCCCCCCCchhhhhcccccceeeeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC
Q 003363 527 GTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS 606 (826)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~ 606 (826)
..+ -++..+ .....+++.+. ..++.||..++++++. ++.+.+ +.|++|+-+||.....
T Consensus 378 e~i-----k~~p~~--------FDa~~~~veQ~-------~atSkDGT~IPYFiv~-K~~~~d-~~pTll~aYGGF~vsl 435 (648)
T COG1505 378 EVI-----REQPVQ--------FDADNYEVEQF-------FATSKDGTRIPYFIVR-KGAKKD-ENPTLLYAYGGFNISL 435 (648)
T ss_pred hhh-----hhccCC--------cCccCceEEEE-------EEEcCCCccccEEEEe-cCCcCC-CCceEEEecccccccc
Confidence 111 000001 11222232222 3455677889989998 765555 8999999999998887
Q ss_pred CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHH
Q 003363 607 LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 686 (826)
Q Consensus 607 ~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~ 686 (826)
...|......+.++|...+..|.||.++||..|+++.......+.++|+.++++.|+++++..+++++|.|.|-||.++.
T Consensus 436 tP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg 515 (648)
T COG1505 436 TPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVG 515 (648)
T ss_pred CCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEE
Confidence 88898888888999999999999999999999998887777777899999999999999999999999999999999999
Q ss_pred HHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCC--CCcEEE
Q 003363 687 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIF 764 (826)
Q Consensus 687 ~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~PvLi 764 (826)
.+++++|++|.|+|+..|+.||..+........| +.+||. ...+++...+.+.||+.+++.- -+|+||
T Consensus 516 ~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW--~~EYG~--------Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LI 585 (648)
T COG1505 516 AALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSW--IAEYGN--------PDDPEDRAFLLAYSPYHNLKPGQKYPPTLI 585 (648)
T ss_pred eeeccChhhhCceeeccchhhhhhhcccccchhh--HhhcCC--------CCCHHHHHHHHhcCchhcCCccccCCCeEE
Confidence 9999999999999999999999877655444344 455554 3346778888999999998763 378999
Q ss_pred EEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHHHHcC
Q 003363 765 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD-FESFLNIGLWFKKYCK 826 (826)
Q Consensus 765 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~-~~~~~~i~~w~~~~l~ 826 (826)
..+..|.+|+|.++++++.+|++.+.++-+.+--++||+-..+... ......+..||.+.|+
T Consensus 586 TTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 586 TTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred EcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999998888999987766554 3455678889988874
No 9
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.95 E-value=1.4e-25 Score=248.77 Aligned_cols=279 Identities=16% Similarity=0.205 Sum_probs=207.9
Q ss_pred HHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEe
Q 003363 82 LSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVP 161 (826)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~ 161 (826)
...+|+.++..+.... ++|+|.....+ +++++.||+++.+ +.+.+++|..+ ..+..|+|
T Consensus 148 ~d~i~~~ltg~~g~f~-----------~riayv~~~~~---~~~~~~l~~~d~d--g~~~~~lt~~~-----~~~~~p~w 206 (429)
T PRK03629 148 SDEVFEKLTGIKGAFR-----------TRIAYVVQTNG---GQFPYELRVSDYD--GYNQFVVHRSP-----QPLMSPAW 206 (429)
T ss_pred HHHHHHHhcCCCCccC-----------CeEEEEEeeCC---CCcceeEEEEcCC--CCCCEEeecCC-----CceeeeEE
Confidence 3457777777666554 56778876443 3567899998864 44567777665 45889999
Q ss_pred CCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCC
Q 003363 162 SPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 240 (826)
Q Consensus 162 SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~ 240 (826)
||||++|||++... +..+++..+ .+++.++++...... ..+.|||||++|+|+....
T Consensus 207 SPDG~~la~~s~~~-g~~~i~i~dl~~G~~~~l~~~~~~~----------~~~~~SPDG~~La~~~~~~----------- 264 (429)
T PRK03629 207 SPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT----------- 264 (429)
T ss_pred cCCCCEEEEEEecC-CCcEEEEEECCCCCeEEccCCCCCc----------CCeEECCCCCEEEEEEcCC-----------
Confidence 99999999998654 556777777 566666666554433 5799999999999985432
Q ss_pred CCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003363 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
+..+||++|+++++.+++ +........+.|||||+. |+|++.+.
T Consensus 265 ------------------------------g~~~I~~~d~~tg~~~~l--t~~~~~~~~~~wSPDG~~----I~f~s~~~ 308 (429)
T PRK03629 265 ------------------------------GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAYTSDQA 308 (429)
T ss_pred ------------------------------CCcEEEEEECCCCCEEEc--cCCCCCcCceEECCCCCE----EEEEeCCC
Confidence 235799999999999999 455556778999999999 99998432
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCC
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 400 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~ 400 (826)
...+||.+|+ ++++.++|+........|.|||||++|+|.+.+.
T Consensus 309 ------------g~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~------- 352 (429)
T PRK03629 309 ------------GRPQVYKVNI-----------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG------- 352 (429)
T ss_pred ------------CCceEEEEEC-----------------CCCCeEEeecCCCCccCEEECCCCCEEEEEEccC-------
Confidence 1237999998 7778888887666667899999999999998764
Q ss_pred cccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003363 401 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (826)
Q Consensus 401 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~ 480 (826)
+..+|+++|+.++..+.++... ....+.|+|||+.|++.+..++...|+.++++++..
T Consensus 353 -g~~~I~~~dl~~g~~~~Lt~~~---------------------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 353 -GQQHIAKQDLATGGVQVLTDTF---------------------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred -CCceEEEEECCCCCeEEeCCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence 2467999999887655444211 113678999999999998877788899999988888
Q ss_pred EEecCCCCCeeeEEEee
Q 003363 481 LRITPAESNFSWSLLTL 497 (826)
Q Consensus 481 ~~lt~~~~~~~~~~~s~ 497 (826)
++|+...+....+.|+|
T Consensus 411 ~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 411 ARLPATDGQVKFPAWSP 427 (429)
T ss_pred EECccCCCCcCCcccCC
Confidence 88876555444455554
No 10
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=2.6e-24 Score=240.19 Aligned_cols=278 Identities=13% Similarity=0.122 Sum_probs=202.8
Q ss_pred HHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeC
Q 003363 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPS 162 (826)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~S 162 (826)
..+++.++..+.+.. .+|+|...... .+...+.||+++. .+...+++|... ..+..|+||
T Consensus 151 d~i~~~ltg~~g~f~-----------~~iafv~~~~~--~~~~~~~l~~~d~--dg~~~~~lt~~~-----~~v~~p~wS 210 (435)
T PRK05137 151 DAIYERLTGEKGYFD-----------TRIVYVAESGP--KNKRIKRLAIMDQ--DGANVRYLTDGS-----SLVLTPRFS 210 (435)
T ss_pred HHHHHHHhCCCCcCC-----------CeEEEEEeeCC--CCCcceEEEEECC--CCCCcEEEecCC-----CCeEeeEEC
Confidence 457778877664432 46778765321 1234678999875 455667787665 458899999
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCC
Q 003363 163 PSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (826)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~ 241 (826)
|||++|+|++..+ +..+++.++ .+++.++++...... ..++|||||++|+|.....
T Consensus 211 pDG~~lay~s~~~-g~~~i~~~dl~~g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~------------ 267 (435)
T PRK05137 211 PNRQEITYMSYAN-GRPRVYLLDLETGQRELVGNFPGMT----------FAPRFSPDGRKVVMSLSQG------------ 267 (435)
T ss_pred CCCCEEEEEEecC-CCCEEEEEECCCCcEEEeecCCCcc----------cCcEECCCCCEEEEEEecC------------
Confidence 9999999998764 557788777 566666666544333 6889999999999986532
Q ss_pred CCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCc
Q 003363 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (826)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~ 321 (826)
+..+||++|+++++++++ +........+.|||||++ |+|++.+.
T Consensus 268 -----------------------------g~~~Iy~~d~~~~~~~~L--t~~~~~~~~~~~spDG~~----i~f~s~~~- 311 (435)
T PRK05137 268 -----------------------------GNTDIYTMDLRSGTTTRL--TDSPAIDTSPSYSPDGSQ----IVFESDRS- 311 (435)
T ss_pred -----------------------------CCceEEEEECCCCceEEc--cCCCCccCceeEcCCCCE----EEEEECCC-
Confidence 347899999999999999 444444567999999999 99988432
Q ss_pred ceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCc
Q 003363 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (826)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~ 401 (826)
...+||++|+ ++++.++|+...+....|.|||||++|+|.+...
T Consensus 312 -----------g~~~Iy~~d~-----------------~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~-------- 355 (435)
T PRK05137 312 -----------GSPQLYVMNA-----------------DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG-------- 355 (435)
T ss_pred -----------CCCeEEEEEC-----------------CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCC--------
Confidence 2237999998 7888889987766677899999999999988653
Q ss_pred ccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCe---EEEEEEECCCC
Q 003363 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS---QVIISVNVSSG 478 (826)
Q Consensus 402 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~---~~l~~vdl~tg 478 (826)
+..+|+++|+.++..+.++.+. ....+.|+|||+.|+|.+...+. ..||.+|++++
T Consensus 356 ~~~~i~~~d~~~~~~~~lt~~~---------------------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 356 GQFSIGVMKPDGSGERILTSGF---------------------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CceEEEEEECCCCceEeccCCC---------------------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 2468999998765544333211 12467899999999998876554 68999999988
Q ss_pred cEEEecCCCCCeeeEEEee
Q 003363 479 ELLRITPAESNFSWSLLTL 497 (826)
Q Consensus 479 ~~~~lt~~~~~~~~~~~s~ 497 (826)
+.++|+. .+....+.|++
T Consensus 415 ~~~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 415 NEREVPT-PGDASDPAWSP 432 (435)
T ss_pred ceEEccC-CCCccCcccCC
Confidence 8888764 33344445554
No 11
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=5.1e-24 Score=237.04 Aligned_cols=278 Identities=15% Similarity=0.174 Sum_probs=202.4
Q ss_pred HHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeC
Q 003363 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPS 162 (826)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~S 162 (826)
-.+|+.++..+..... +++|...... ++....|++++. ++.+.++++..+ ..+..|+||
T Consensus 168 d~i~~~ltG~~g~f~~-----------riayv~~~~~---~~~~~~l~i~d~--dG~~~~~l~~~~-----~~~~~p~wS 226 (448)
T PRK04792 168 DIVYEKLTGERGAFLT-----------RIAYVVVNDK---DKYPYQLMIADY--DGYNEQMLLRSP-----EPLMSPAWS 226 (448)
T ss_pred HHHHHHhcCCCccccC-----------EEEEEEeeCC---CCCceEEEEEeC--CCCCceEeecCC-----CcccCceEC
Confidence 4577777777666554 4457654432 234567888764 444556777665 457889999
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCC
Q 003363 163 PSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (826)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~ 241 (826)
|||++|+|++..+ +..++|.++ .+++.++++...... ..++|||||++|+|.....
T Consensus 227 PDG~~La~~s~~~-g~~~L~~~dl~tg~~~~lt~~~g~~----------~~~~wSPDG~~La~~~~~~------------ 283 (448)
T PRK04792 227 PDGRKLAYVSFEN-RKAEIFVQDIYTQVREKVTSFPGIN----------GAPRFSPDGKKLALVLSKD------------ 283 (448)
T ss_pred CCCCEEEEEEecC-CCcEEEEEECCCCCeEEecCCCCCc----------CCeeECCCCCEEEEEEeCC------------
Confidence 9999999998754 567888888 566666666543332 5789999999999986532
Q ss_pred CCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCc
Q 003363 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (826)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~ 321 (826)
+..+||++|+++++++++ +........++|||||+. |+|++...
T Consensus 284 -----------------------------g~~~Iy~~dl~tg~~~~l--t~~~~~~~~p~wSpDG~~----I~f~s~~~- 327 (448)
T PRK04792 284 -----------------------------GQPEIYVVDIATKALTRI--TRHRAIDTEPSWHPDGKS----LIFTSERG- 327 (448)
T ss_pred -----------------------------CCeEEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEECCC-
Confidence 346899999999999998 444445668999999999 99987432
Q ss_pred ceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCc
Q 003363 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (826)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~ 401 (826)
...+||.+|+ ++++.++|+........|.|||||++|+|.+...
T Consensus 328 -----------g~~~Iy~~dl-----------------~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~-------- 371 (448)
T PRK04792 328 -----------GKPQIYRVNL-----------------ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTN-------- 371 (448)
T ss_pred -----------CCceEEEEEC-----------------CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecC--------
Confidence 2238999998 7788888875544456799999999999987653
Q ss_pred ccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 402 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
+..+|+++|+.++....++... ....+.|+|||+.|+|++..++...||.++++++..+
T Consensus 372 g~~~I~~~dl~~g~~~~lt~~~---------------------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~ 430 (448)
T PRK04792 372 GKFNIARQDLETGAMQVLTSTR---------------------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKA 430 (448)
T ss_pred CceEEEEEECCCCCeEEccCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceE
Confidence 3468999999887654443221 1125689999999999998888889999999877777
Q ss_pred EecCCCCCeeeEEEee
Q 003363 482 RITPAESNFSWSLLTL 497 (826)
Q Consensus 482 ~lt~~~~~~~~~~~s~ 497 (826)
+++...+....+.|+|
T Consensus 431 ~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 431 RLPAGQGEVKSPAWSP 446 (448)
T ss_pred ECcCCCCCcCCCccCC
Confidence 7766555444455554
No 12
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.8e-22 Score=214.76 Aligned_cols=322 Identities=19% Similarity=0.216 Sum_probs=232.1
Q ss_pred CCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC-CCceeeeeccCCCCCCCchhhhhccccccee
Q 003363 477 SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA-NKGTWSWLNVSSPISRCPEKVKSLLSSRQFS 555 (826)
Q Consensus 477 tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 555 (826)
+...+.+..+.+......-..+...+.|..+++.+|+.||-+|+..+. ..+.+ .+++.-+.- .....+.
T Consensus 371 g~~~~~fpLpv~sv~~~~g~~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf--~e~~~~lpg--------~~~s~y~ 440 (712)
T KOG2237|consen 371 GSLLRSFPLPVGSVSGTSGDFKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVF--REITVVLPG--------FDASDYV 440 (712)
T ss_pred CceeeeecCCCCcccccccCCCCceEEEEEeccCCCCeEEEeeccCCCCCCcce--eeeccccCc--------ccccceE
Confidence 444444444444222111134567899999999999999999998664 11212 222210111 1111222
Q ss_pred eeeecccCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCC
Q 003363 556 IMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF 635 (826)
Q Consensus 556 ~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~ 635 (826)
++.+ ...+.||..+...++..+..+..++.|++|+.||+.+......|......|..+|++....|.||.|++
T Consensus 441 ~~r~-------~~~SkDGt~VPM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~ 513 (712)
T KOG2237|consen 441 VERI-------EVSSKDGTKVPMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEY 513 (712)
T ss_pred EEEE-------EEecCCCCccceEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCccc
Confidence 2222 234456666666777766656677999999999998877667777666667789999999999999999
Q ss_pred chhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCC
Q 003363 636 GEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 715 (826)
Q Consensus 636 G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~ 715 (826)
|..|++........+.++|+++++++|+++++..++++++.|.|.||.++..++-++||+|.|+|+..|+.|+......+
T Consensus 514 G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~t 593 (712)
T KOG2237|consen 514 GEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDT 593 (712)
T ss_pred ccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccC
Confidence 99999988887788899999999999999999999999999999999999999999999999999999999998776666
Q ss_pred CCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCC-----CcEEEEEeCCCCCCCcHHHHHHHHHHHhC--
Q 003363 716 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-----TPTIFLLGAQDLRVPVSNGLQYARALREK-- 788 (826)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-----~PvLii~G~~D~~vp~~~~~~~~~~l~~~-- 788 (826)
..+-|. ..++. .-.+++.+.+...+|+..+++++ +-+|+..+.+|.+|++.++.++.++|+..
T Consensus 594 ilplt~--sd~ee--------~g~p~~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~ 663 (712)
T KOG2237|consen 594 ILPLTT--SDYEE--------WGNPEDFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATC 663 (712)
T ss_pred ccccch--hhhcc--------cCChhhhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhh
Confidence 666664 22222 11234556666667766666553 34899999999999999999999999864
Q ss_pred -----CCCEEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHHHHc
Q 003363 789 -----GVETKVIVFPNDVHGIERPQSD-FESFLNIGLWFKKYC 825 (826)
Q Consensus 789 -----g~~~~~~~~p~~~H~~~~~~~~-~~~~~~i~~w~~~~l 825 (826)
..++-+.+..++||+.-.+... .+-..-..+|+.+.+
T Consensus 664 ~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaFl~K~~ 706 (712)
T KOG2237|consen 664 DSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAFLAKML 706 (712)
T ss_pred cchhcCCCEEEEEecCCccccCCchHHHHHHHHHHHHHHHHHh
Confidence 2468888999999987544322 122234566776654
No 13
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=8.2e-24 Score=235.80 Aligned_cols=280 Identities=15% Similarity=0.122 Sum_probs=202.2
Q ss_pred HHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEe
Q 003363 82 LSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVP 161 (826)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~ 161 (826)
...+++.++..+.... .+|+|+.... ..++.+..||+++. .+.+.++++... ..+..|+|
T Consensus 152 ~d~i~~~~tg~~g~f~-----------~~ia~v~~~~--~~~~~~~~l~i~D~--~g~~~~~lt~~~-----~~v~~p~w 211 (433)
T PRK04922 152 ADAIYEKITGVPGAFW-----------TRIAYVTVSG--AGGAMRYALQVADS--DGYNPQTILRSA-----EPILSPAW 211 (433)
T ss_pred HHHHHHHHcCCCCccc-----------ceEEEEEEeC--CCCCceEEEEEECC--CCCCceEeecCC-----CccccccC
Confidence 3456777775554432 4566775543 22345678888775 455667777655 45789999
Q ss_pred CCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCC
Q 003363 162 SPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 240 (826)
Q Consensus 162 SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~ 240 (826)
||||++|+|++..+ +..+++.++ .+++.++++...... ..++|||||++|+|.....
T Consensus 212 SpDg~~la~~s~~~-~~~~l~~~dl~~g~~~~l~~~~g~~----------~~~~~SpDG~~l~~~~s~~----------- 269 (433)
T PRK04922 212 SPDGKKLAYVSFER-GRSAIYVQDLATGQRELVASFRGIN----------GAPSFSPDGRRLALTLSRD----------- 269 (433)
T ss_pred CCCCCEEEEEecCC-CCcEEEEEECCCCCEEEeccCCCCc----------cCceECCCCCEEEEEEeCC-----------
Confidence 99999999998754 567788777 556666665443322 5789999999999986432
Q ss_pred CCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003363 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
+..+||++|+++++.+++ +........++|||||++ |+|++++.
T Consensus 270 ------------------------------g~~~Iy~~d~~~g~~~~l--t~~~~~~~~~~~spDG~~----l~f~sd~~ 313 (433)
T PRK04922 270 ------------------------------GNPEIYVMDLGSRQLTRL--TNHFGIDTEPTWAPDGKS----IYFTSDRG 313 (433)
T ss_pred ------------------------------CCceEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEECCC
Confidence 336899999999999988 444334567899999999 99997432
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCC
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 400 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~ 400 (826)
. ..+||.+|+ .+++.++++........|.|||||++|+|.+...
T Consensus 314 g------------~~~iy~~dl-----------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~------- 357 (433)
T PRK04922 314 G------------RPQIYRVAA-----------------SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSG------- 357 (433)
T ss_pred C------------CceEEEEEC-----------------CCCCeEEeecCCCCccCEEECCCCCEEEEEECCC-------
Confidence 1 237999998 7778888886555566899999999999987642
Q ss_pred cccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003363 401 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (826)
Q Consensus 401 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~ 480 (826)
+..+|+++|+.+++.+.++.+. ....+.|+|||+.|+|.+...+...||.++++++..
T Consensus 358 -~~~~I~v~d~~~g~~~~Lt~~~---------------------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~ 415 (433)
T PRK04922 358 -GQYRIAVMDLSTGSVRTLTPGS---------------------LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR 415 (433)
T ss_pred -CceeEEEEECCCCCeEECCCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 3458999999887665444321 112568999999999998888888999999988888
Q ss_pred EEecCCCCCeeeEEEee
Q 003363 481 LRITPAESNFSWSLLTL 497 (826)
Q Consensus 481 ~~lt~~~~~~~~~~~s~ 497 (826)
++++...+....+.|+|
T Consensus 416 ~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 416 QRLVSADGEVREPAWSP 432 (433)
T ss_pred EEcccCCCCCCCCccCC
Confidence 88876544444444543
No 14
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=8.3e-24 Score=234.88 Aligned_cols=260 Identities=15% Similarity=0.175 Sum_probs=189.7
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC
Q 003363 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ 187 (826)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~ 187 (826)
.+++|.... ..+..||+++. ++...++++... ..+..|+|||||++|+|++..+ +..+++..+ .+
T Consensus 164 ~~iayv~~~------~~~~~L~~~D~--dG~~~~~l~~~~-----~~v~~p~wSPDG~~la~~s~~~-~~~~I~~~dl~~ 229 (427)
T PRK02889 164 TRIAYVIKT------GNRYQLQISDA--DGQNAQSALSSP-----EPIISPAWSPDGTKLAYVSFES-KKPVVYVHDLAT 229 (427)
T ss_pred cEEEEEEcc------CCccEEEEECC--CCCCceEeccCC-----CCcccceEcCCCCEEEEEEccC-CCcEEEEEECCC
Confidence 457787532 23567888775 444556666554 4578899999999999998754 566788777 56
Q ss_pred CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccC
Q 003363 188 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (826)
Q Consensus 188 ~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (826)
++..+++...... ..++|||||++|+|.....
T Consensus 230 g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~-------------------------------------- 261 (427)
T PRK02889 230 GRRRVVANFKGSN----------SAPAWSPDGRTLAVALSRD-------------------------------------- 261 (427)
T ss_pred CCEEEeecCCCCc----------cceEECCCCCEEEEEEccC--------------------------------------
Confidence 6666665444332 6899999999999976432
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccc
Q 003363 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (826)
+..+||++|+++++.+++ +........+.|||||+. |+|++++. ...+||.+++
T Consensus 262 ---g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----l~f~s~~~------------g~~~Iy~~~~----- 315 (427)
T PRK02889 262 ---GNSQIYTVNADGSGLRRL--TQSSGIDTEPFFSPDGRS----IYFTSDRG------------GAPQIYRMPA----- 315 (427)
T ss_pred ---CCceEEEEECCCCCcEEC--CCCCCCCcCeEEcCCCCE----EEEEecCC------------CCcEEEEEEC-----
Confidence 347899999999998888 444445567899999999 99987432 1237999998
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeee
Q 003363 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 427 (826)
.++..++++........|.|||||++|+|.+... +..+|+++|+.+++.+.++...
T Consensus 316 ------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~--------g~~~I~v~d~~~g~~~~lt~~~---- 371 (427)
T PRK02889 316 ------------SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG--------GAFKLYVQDLATGQVTALTDTT---- 371 (427)
T ss_pred ------------CCCceEEEecCCCCcCceEECCCCCEEEEEEccC--------CcEEEEEEECCCCCeEEccCCC----
Confidence 6777777775555566899999999999998753 2358999999887765544221
Q ss_pred eeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEee
Q 003363 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 497 (826)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~ 497 (826)
....+.|+|||+.|+|.+...+...|+.++++++..+++....+....+.|+|
T Consensus 372 -----------------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 372 -----------------RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred -----------------CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCC
Confidence 11367899999999999988888899999997666666765445444455554
No 15
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=1.2e-23 Score=230.27 Aligned_cols=256 Identities=9% Similarity=-0.000 Sum_probs=186.4
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCe-EEEEecCCCCCCeEEEEe-c
Q 003363 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK-LLVVRNPENESPIQFELW-S 186 (826)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~-la~~~~~~~~~~~~~~i~-~ 186 (826)
.+++|...... .+++.||+.+.+ +.+.++++... ....|.|||||++ ++|++..+ +.+++|.++ .
T Consensus 155 ~r~~~v~~~~~----~~~~~l~~~d~d--g~~~~~~~~~~------~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~ 221 (419)
T PRK04043 155 KRKVVFSKYTG----PKKSNIVLADYT--LTYQKVIVKGG------LNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLY 221 (419)
T ss_pred eeEEEEEEccC----CCcceEEEECCC--CCceeEEccCC------CeEeEEECCCCCcEEEEEEccC-CCCEEEEEECC
Confidence 34556544211 246789998864 44555566543 3678999999997 66666543 567899988 6
Q ss_pred CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCcc
Q 003363 187 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 266 (826)
Q Consensus 187 ~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 266 (826)
+++.++++...... ..+.|||||++|+|.....
T Consensus 222 tg~~~~lt~~~g~~----------~~~~~SPDG~~la~~~~~~------------------------------------- 254 (419)
T PRK04043 222 TGKKEKIASSQGML----------VVSDVSKDGSKLLLTMAPK------------------------------------- 254 (419)
T ss_pred CCcEEEEecCCCcE----------EeeEECCCCCEEEEEEccC-------------------------------------
Confidence 77788887643333 5688999999999986532
Q ss_pred CCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccccc
Q 003363 267 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (826)
Q Consensus 267 ~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (826)
++.+||++|+++++.++| +........+.|||||++ |+|++++. ...+||.+|+
T Consensus 255 ----g~~~Iy~~dl~~g~~~~L--T~~~~~d~~p~~SPDG~~----I~F~Sdr~------------g~~~Iy~~dl---- 308 (419)
T PRK04043 255 ----GQPDIYLYDTNTKTLTQI--TNYPGIDVNGNFVEDDKR----IVFVSDRL------------GYPNIFMKKL---- 308 (419)
T ss_pred ----CCcEEEEEECCCCcEEEc--ccCCCccCccEECCCCCE----EEEEECCC------------CCceEEEEEC----
Confidence 347899999999999999 444434556799999999 99998542 2248999999
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeee
Q 003363 347 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (826)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 426 (826)
++++.++++.... ..+.|||||++|+|.+....... ..+..+|+++|+++++.+.++...
T Consensus 309 -------------~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~--~~~~~~I~v~d~~~g~~~~LT~~~--- 368 (419)
T PRK04043 309 -------------NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEF--GKNTFNLYLISTNSDYIRRLTANG--- 368 (419)
T ss_pred -------------CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCccc--CCCCcEEEEEECCCCCeEECCCCC---
Confidence 8888888886533 24699999999999987642111 112368999999998776666431
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~ 488 (826)
....+.|+|||+.|+|.+..++...|+.+++++....+|....+
T Consensus 369 ------------------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 369 ------------------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred ------------------CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCC
Confidence 11257899999999999888888899999998877777765444
No 16
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=3.5e-23 Score=231.66 Aligned_cols=280 Identities=15% Similarity=0.169 Sum_probs=200.0
Q ss_pred HHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEe
Q 003363 82 LSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVP 161 (826)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~ 161 (826)
...+|+.++..+.... .+++|.....+.. ..+..|++.+. .+.+.++++... ..+..|+|
T Consensus 147 ~d~i~~~ltg~~g~f~-----------~~ia~v~~~~~~~--~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p~w 206 (430)
T PRK00178 147 SDQSFEKLTGIKGAFS-----------TRILYVTAERFSV--NTRYTLQRSDY--DGARAVTLLQSR-----EPILSPRW 206 (430)
T ss_pred HHHHHHHHhCCCccce-----------eeEEEEEeeCCCC--CcceEEEEECC--CCCCceEEecCC-----CceeeeeE
Confidence 3457777765554322 4577876544321 23456777665 344566666554 34789999
Q ss_pred CCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCC
Q 003363 162 SPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 240 (826)
Q Consensus 162 SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~ 240 (826)
||||++|+|++..+ +..+++.++ .+++.++++...... ..++|||||++|+|.....
T Consensus 207 SpDG~~la~~s~~~-~~~~l~~~~l~~g~~~~l~~~~g~~----------~~~~~SpDG~~la~~~~~~----------- 264 (430)
T PRK00178 207 SPDGKRIAYVSFEQ-KRPRIFVQNLDTGRREQITNFEGLN----------GAPAWSPDGSKLAFVLSKD----------- 264 (430)
T ss_pred CCCCCEEEEEEcCC-CCCEEEEEECCCCCEEEccCCCCCc----------CCeEECCCCCEEEEEEccC-----------
Confidence 99999999998764 566788877 556666665443222 5799999999999976432
Q ss_pred CCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003363 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
+..+||++|+++++.+++ +........+.|||||+. |+|.+.+.
T Consensus 265 ------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~~spDg~~----i~f~s~~~ 308 (430)
T PRK00178 265 ------------------------------GNPEIYVMDLASRQLSRV--TNHPAIDTEPFWGKDGRT----LYFTSDRG 308 (430)
T ss_pred ------------------------------CCceEEEEECCCCCeEEc--ccCCCCcCCeEECCCCCE----EEEEECCC
Confidence 236899999999999988 444445667899999999 99987432
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCC
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 400 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~ 400 (826)
...+||.+++ .+++.++++........|.|||||++|+|.+...
T Consensus 309 ------------g~~~iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~------- 352 (430)
T PRK00178 309 ------------GKPQIYKVNV-----------------NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD------- 352 (430)
T ss_pred ------------CCceEEEEEC-----------------CCCCEEEeecCCCCccceEECCCCCEEEEEEccC-------
Confidence 2237999998 7778888876555567899999999999998653
Q ss_pred cccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003363 401 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (826)
Q Consensus 401 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~ 480 (826)
+..+|+++|+.+++.+.++... ....+.|+|||+.|+|++...+...|+.++++++..
T Consensus 353 -~~~~l~~~dl~tg~~~~lt~~~---------------------~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 353 -GNFHVAAQDLQRGSVRILTDTS---------------------LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred -CceEEEEEECCCCCEEEccCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 2457999999987765554321 112568999999999998888888999999987777
Q ss_pred EEecCCCCCeeeEEEee
Q 003363 481 LRITPAESNFSWSLLTL 497 (826)
Q Consensus 481 ~~lt~~~~~~~~~~~s~ 497 (826)
+++....+....+.|++
T Consensus 411 ~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 411 LPLPTAQGEVREPSWSP 427 (430)
T ss_pred EECcCCCCCcCCCccCC
Confidence 67765444444444543
No 17
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=4.2e-22 Score=222.42 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=185.2
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 003363 164 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (826)
Q Consensus 164 dG~~la~~~~~~~~---~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~ 239 (826)
-..+|||+++..+. ..+++.++ ++...++++...... ..++|||||++|+|++...
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v----------~~p~wSpDG~~lay~s~~~---------- 223 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLV----------LTPRFSPNRQEITYMSYAN---------- 223 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCe----------EeeEECCCCCEEEEEEecC----------
Confidence 35689999875432 45677666 455666666543333 7899999999999987543
Q ss_pred CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003363 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (826)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~ 319 (826)
+..+||++|+.+|+.++++ ........+.|||||+. |+|+...
T Consensus 224 -------------------------------g~~~i~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~~----la~~~~~ 266 (435)
T PRK05137 224 -------------------------------GRPRVYLLDLETGQRELVG--NFPGMTFAPRFSPDGRK----VVMSLSQ 266 (435)
T ss_pred -------------------------------CCCEEEEEECCCCcEEEee--cCCCcccCcEECCCCCE----EEEEEec
Confidence 3478999999999988883 33334567899999999 9998632
Q ss_pred CcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCC
Q 003363 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (826)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~ 399 (826)
+...+||.+|+ ++++.++|+.+.+....|.|||||++|+|.+.+.
T Consensus 267 ------------~g~~~Iy~~d~-----------------~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~------ 311 (435)
T PRK05137 267 ------------GGNTDIYTMDL-----------------RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS------ 311 (435)
T ss_pred ------------CCCceEEEEEC-----------------CCCceEEccCCCCccCceeEcCCCCEEEEEECCC------
Confidence 23358999998 7888999998877778899999999999998764
Q ss_pred CcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003363 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (826)
Q Consensus 400 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~ 479 (826)
+..+||++|+.++..++++... .....+.|||||+.|++.....+...|+.+|++++.
T Consensus 312 --g~~~Iy~~d~~g~~~~~lt~~~--------------------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 312 --GSPQLYVMNADGSNPRRISFGG--------------------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred --CCCeEEEEECCCCCeEEeecCC--------------------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 3468999998876655443211 012357899999999998876677899999998888
Q ss_pred EEEecCCCCCeeeEEEeecCCEEEEEEeCCCCC--CeEEEEeeccc
Q 003363 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV--PQVKYGYFVDK 523 (826)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p--~~l~~~~~~~~ 523 (826)
.+.++... ......|++||+.|++........ ..|+++++.++
T Consensus 370 ~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 370 ERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred eEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 88777653 345578999999999988766553 57999987654
No 18
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=2.2e-21 Score=215.91 Aligned_cols=272 Identities=14% Similarity=0.152 Sum_probs=188.9
Q ss_pred HHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEe
Q 003363 82 LSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVP 161 (826)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~ 161 (826)
...+++.++..+.... ++|+|+....+ +.+...||+++.+ +...+.++... ..+..|+|
T Consensus 153 ~d~i~~~ltg~~g~f~-----------~ria~v~~~~~---~~~~~~i~i~d~d--g~~~~~lt~~~-----~~v~~p~w 211 (429)
T PRK01742 153 SDEVFEKLTAIRGAFR-----------TRIAYVVQKNG---GSQPYEVRVADYD--GFNQFIVNRSS-----QPLMSPAW 211 (429)
T ss_pred HHHHHHHHcCCCCccC-----------CEEEEEEEEcC---CCceEEEEEECCC--CCCceEeccCC-----CccccceE
Confidence 3457777776665544 56678766543 2345788888764 33455566544 34789999
Q ss_pred CCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCC
Q 003363 162 SPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 240 (826)
Q Consensus 162 SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~ 240 (826)
||||++|||++..+ +..+++..+ .+++.+++....... ..++|||||++|+|.+...
T Consensus 212 SPDG~~la~~s~~~-~~~~i~i~dl~tg~~~~l~~~~g~~----------~~~~wSPDG~~La~~~~~~----------- 269 (429)
T PRK01742 212 SPDGSKLAYVSFEN-KKSQLVVHDLRSGARKVVASFRGHN----------GAPAFSPDGSRLAFASSKD----------- 269 (429)
T ss_pred cCCCCEEEEEEecC-CCcEEEEEeCCCCceEEEecCCCcc----------CceeECCCCCEEEEEEecC-----------
Confidence 99999999998654 456677666 455555555443322 5789999999999976432
Q ss_pred CCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003363 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
+..+||++|+++++.+++ +........+.|||||+. |+|++.+.
T Consensus 270 ------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----i~f~s~~~ 313 (429)
T PRK01742 270 ------------------------------GVLNIYVMGANGGTPSQL--TSGAGNNTEPSWSPDGQS----ILFTSDRS 313 (429)
T ss_pred ------------------------------CcEEEEEEECCCCCeEee--ccCCCCcCCEEECCCCCE----EEEEECCC
Confidence 235799999999999998 445556778999999999 99987432
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCC
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 400 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~ 400 (826)
...+||.++. .++..+.++. .+ ..+.|||||++|+|.+.
T Consensus 314 ------------g~~~I~~~~~-----------------~~~~~~~l~~-~~--~~~~~SpDG~~ia~~~~--------- 352 (429)
T PRK01742 314 ------------GSPQVYRMSA-----------------SGGGASLVGG-RG--YSAQISADGKTLVMING--------- 352 (429)
T ss_pred ------------CCceEEEEEC-----------------CCCCeEEecC-CC--CCccCCCCCCEEEEEcC---------
Confidence 2237999987 5565666642 22 46899999999998764
Q ss_pred cccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003363 401 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (826)
Q Consensus 401 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~ 480 (826)
..++++|+.++....++... ....+.|+|||+.|++++..++...++.++.+++..
T Consensus 353 ---~~i~~~Dl~~g~~~~lt~~~---------------------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~ 408 (429)
T PRK01742 353 ---DNVVKQDLTSGSTEVLSSTF---------------------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK 408 (429)
T ss_pred ---CCEEEEECCCCCeEEecCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 23788998886644332211 113578999999999888766666777888877778
Q ss_pred EEecCCCCCeeeEEEee
Q 003363 481 LRITPAESNFSWSLLTL 497 (826)
Q Consensus 481 ~~lt~~~~~~~~~~~s~ 497 (826)
++|+...+....+.|+|
T Consensus 409 ~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 409 ARLPGSDGQVKFPAWSP 425 (429)
T ss_pred EEccCCCCCCCCcccCC
Confidence 88875555444455665
No 19
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=9.2e-22 Score=217.16 Aligned_cols=248 Identities=15% Similarity=0.152 Sum_probs=178.9
Q ss_pred CCeEEEEecCCC-----CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCe--EEEEeecCCCCCCCc
Q 003363 165 GSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL--IAYVAEEPSPSKPTF 236 (826)
Q Consensus 165 G~~la~~~~~~~-----~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~--ia~~~~~~~~~~~~~ 236 (826)
|++|||+....+ ....+|+++ ++++.++++...... ..|+|||||++ ++|++.+.
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~----------~sP~wSPDG~~~~~~y~S~~~------- 208 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLS----------ITPTWMHIGSGFPYLYVSYKL------- 208 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCc----------ccceEccCCCceEEEEEEccC-------
Confidence 899999986532 145788888 667778887643333 68999999998 55576543
Q ss_pred cCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEE
Q 003363 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFV 316 (826)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~ 316 (826)
+.++||++++++|+.++++ ........+.|||||++ |+|+
T Consensus 209 ----------------------------------g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPDG~~----Laf~ 248 (428)
T PRK01029 209 ----------------------------------GVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPRKKL----LAFI 248 (428)
T ss_pred ----------------------------------CCceEEEEECCCCCceEee--cCCCCccceEECCCCCE----EEEE
Confidence 3479999999999999883 43344567999999999 9998
Q ss_pred eecCcceeeeeeeeccCCCceEEE--EcccccchhhhhhhhcCCCCCCcceecCCCC-ccccCceecCCCCEEEEEeccC
Q 003363 317 GWSSETRKLGIKYCYNRPCALYAV--RVSLYKSEASELELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~l~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~-~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
+...+ ..++|.. +++.+ .++..++|+... .....|.|||||++|+|.+.+.
T Consensus 249 s~~~g------------~~di~~~~~~~~~g--------------~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~ 302 (428)
T PRK01029 249 SDRYG------------NPDLFIQSFSLETG--------------AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKD 302 (428)
T ss_pred ECCCC------------CcceeEEEeecccC--------------CCCcceEeecCCCCCcCCeEECCCCCEEEEEECCC
Confidence 84321 2256664 44110 235677888653 4457899999999999998764
Q ss_pred CCCCCCCcccceEEEEeCCCCC--CCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
+..+||++++++++ .+.++... .....+.|||||+.|+|.....+..+|+
T Consensus 303 --------g~~~ly~~~~~~~g~~~~~lt~~~--------------------~~~~~p~wSPDG~~Laf~~~~~g~~~I~ 354 (428)
T PRK01029 303 --------GRPRIYIMQIDPEGQSPRLLTKKY--------------------RNSSCPAWSPDGKKIAFCSVIKGVRQIC 354 (428)
T ss_pred --------CCceEEEEECcccccceEEeccCC--------------------CCccceeECCCCCEEEEEEcCCCCcEEE
Confidence 34579999886432 22222111 0224678999999999988777778999
Q ss_pred EEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 472 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 472 ~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
.+|+++|+.++|+..........|++||+.|++..... ....||+.++.+++
T Consensus 355 v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl~~g~ 406 (428)
T PRK01029 355 VYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNS-NESELYLISLITKK 406 (428)
T ss_pred EEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCC
Confidence 99999999999987655456678999999999887653 34679988876543
No 20
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.2e-21 Score=214.55 Aligned_cols=239 Identities=11% Similarity=0.044 Sum_probs=178.0
Q ss_pred CeEEEEec-CCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCe-EEEEeecCCCCCCCccCCCCC
Q 003363 166 SKLLVVRN-PENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSKPTFSLGSTK 242 (826)
Q Consensus 166 ~~la~~~~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~-ia~~~~~~~~~~~~~~~~~~~ 242 (826)
.++||+.. ......+++..+ ++...+.++.. ... ..+.|||||++ ++|.+.+.
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~-~~~----------~~p~wSpDG~~~i~y~s~~~------------- 210 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKG-GLN----------IFPKWANKEQTAFYYTSYGE------------- 210 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccC-CCe----------EeEEECCCCCcEEEEEEccC-------------
Confidence 46667665 332356788877 44455545543 222 68999999997 66665432
Q ss_pred CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcc
Q 003363 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (826)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~ 322 (826)
+.++||++|+.+|+.+++ +........+.|||||++ |+|+....
T Consensus 211 ----------------------------~~~~Iyv~dl~tg~~~~l--t~~~g~~~~~~~SPDG~~----la~~~~~~-- 254 (419)
T PRK04043 211 ----------------------------RKPTLYKYNLYTGKKEKI--ASSQGMLVVSDVSKDGSK----LLLTMAPK-- 254 (419)
T ss_pred ----------------------------CCCEEEEEECCCCcEEEE--ecCCCcEEeeEECCCCCE----EEEEEccC--
Confidence 347999999999999999 443334556889999999 99987421
Q ss_pred eeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcc
Q 003363 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (826)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~ 402 (826)
...+||.+|+ ++++.++||...+....|.|||||++|+|.+.+. +
T Consensus 255 ----------g~~~Iy~~dl-----------------~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~--------g 299 (419)
T PRK04043 255 ----------GQPDIYLYDT-----------------NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL--------G 299 (419)
T ss_pred ----------CCcEEEEEEC-----------------CCCcEEEcccCCCccCccEECCCCCEEEEEECCC--------C
Confidence 2358999998 7888999998876677899999999999999874 3
Q ss_pred cceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC------CeEEEEEEECC
Q 003363 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG------SSQVIISVNVS 476 (826)
Q Consensus 403 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~------~~~~l~~vdl~ 476 (826)
..+||++|+++++.++++... .....|||||+.|++..... +..+||.+|++
T Consensus 300 ~~~Iy~~dl~~g~~~rlt~~g----------------------~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 300 YPNIFMKKLNSGSVEQVVFHG----------------------KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred CceEEEEECCCCCeEeCccCC----------------------CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 468999999987765554211 01347999999999988654 33689999999
Q ss_pred CCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 477 SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 477 tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
+|+.++|+.... ...+.|+|||+.|+|.... ..-..|+..++.+.
T Consensus 358 ~g~~~~LT~~~~-~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 358 SDYIRRLTANGV-NQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCCeEECCCCCC-cCCeEECCCCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 999999998643 3357899999999998765 44456888887654
No 21
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.89 E-value=4.3e-22 Score=215.51 Aligned_cols=331 Identities=16% Similarity=0.166 Sum_probs=217.1
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (826)
||||+.+.+..+....-..+....++++++.+ ++.++++... .....+.|||||++|||+++.+ +|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~--~~~~~l~~~~-----~~~~~~~~sP~g~~~~~v~~~n-----ly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET--GEITPLTPPP-----PKLQDAKWSPDGKYIAFVRDNN-----LYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT--TEEEESS-EE-----TTBSEEEE-SSSTEEEEEETTE-----EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC--CceEECcCCc-----cccccceeecCCCeeEEEecCc-----eEEE
Confidence 79999999988776666666778889988744 3455554432 4588999999999999998875 7777
Q ss_pred e-cCCceeEEEecC-----CCccccccCCC---cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCC
Q 003363 185 W-SQSQLEKEFHVP-----QTVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (826)
Q Consensus 185 ~-~~~~~~~~~~~~-----~~~~g~v~~~~---~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (826)
. .++..+++|... .+..++||.+| ....+.|||||++|||...+...........+.......+...
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~---- 144 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVE---- 144 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEE----
T ss_pred ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccc----
Confidence 6 466777777532 23445566655 3468899999999999987765433211111111100000000
Q ss_pred cceeecCCCccCCCccCceEEEEEccCCceEeccC----CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeec
Q 003363 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCY 331 (826)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~----~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~ 331 (826)
...| |.-|... ....|+++|+++++...+.. .+.+.....+.|++|++. |++.--....
T Consensus 145 ~~~Y-Pk~G~~n---p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~----l~~~~~nR~q--------- 207 (353)
T PF00930_consen 145 SIRY-PKAGDPN---PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR----LWVQWLNRDQ--------- 207 (353)
T ss_dssp EEE---BTTS------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE----EEEEEEETTS---------
T ss_pred cccc-CCCCCcC---CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE----EEEEEcccCC---------
Confidence 0111 1112211 34679999999998766531 123456778999999996 6665422111
Q ss_pred cCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC----CCc-cccCceec-CCCCEEEEEeccCCCCCCCCcccce
Q 003363 332 NRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE----SIS-SAFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDS 405 (826)
Q Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~----~~~-~~~~p~~S-pDG~~l~f~s~~~~~~~g~~~~~~~ 405 (826)
....|+.+|+ .++..+.+.. ... ....+.|. +||..++|.+.++ +..+
T Consensus 208 -~~~~l~~~d~-----------------~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~--------G~~h 261 (353)
T PF00930_consen 208 -NRLDLVLCDA-----------------STGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD--------GYRH 261 (353)
T ss_dssp -TEEEEEEEEE-----------------CTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT--------SSEE
T ss_pred -CEEEEEEEEC-----------------CCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC--------CCcE
Confidence 2236778887 5555443321 111 12345555 9999999999964 4689
Q ss_pred EEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC--CeEEEEEEECC-CCcEEE
Q 003363 406 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG--SSQVIISVNVS-SGELLR 482 (826)
Q Consensus 406 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~--~~~~l~~vdl~-tg~~~~ 482 (826)
|++++..++..+.+|.+..++.. -+.|+++++.|||.+... ...+||+++++ +|+.++
T Consensus 262 ly~~~~~~~~~~~lT~G~~~V~~-------------------i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~ 322 (353)
T PF00930_consen 262 LYLYDLDGGKPRQLTSGDWEVTS-------------------ILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC 322 (353)
T ss_dssp EEEEETTSSEEEESS-SSS-EEE-------------------EEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE
T ss_pred EEEEcccccceeccccCceeecc-------------------cceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe
Confidence 99999999888888887766544 236888999999998863 57899999999 999999
Q ss_pred ecCCCCCeeeEEEeecCCEEEEEEeCCCCCC
Q 003363 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 513 (826)
Q Consensus 483 lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~ 513 (826)
||...+......||++++.++..+++++.|+
T Consensus 323 LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 323 LTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp SSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred ccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 9998886656799999999999999999985
No 22
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=4.6e-21 Score=212.61 Aligned_cols=242 Identities=17% Similarity=0.160 Sum_probs=179.4
Q ss_pred CeEEEEecCCCC--CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCC
Q 003363 166 SKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 242 (826)
Q Consensus 166 ~~la~~~~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~ 242 (826)
++|||+....++ ..+++.++ ++.+.++++...... ..++|||||++|||++...
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~----------~~p~wSPDG~~la~~s~~~------------- 220 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES------------- 220 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCce----------eeeEEcCCCCEEEEEEecC-------------
Confidence 789999865322 34566666 455666666543333 6899999999999986432
Q ss_pred CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcc
Q 003363 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (826)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~ 322 (826)
+..+||++|+.+|+.+.++ ........+.|||||+. |+|+....
T Consensus 221 ----------------------------g~~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPDG~~----La~~~~~~-- 264 (429)
T PRK03629 221 ----------------------------GRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPDGSK----LAFALSKT-- 264 (429)
T ss_pred ----------------------------CCcEEEEEECCCCCeEEcc--CCCCCcCCeEECCCCCE----EEEEEcCC--
Confidence 3478999999999988883 33334567999999999 99986321
Q ss_pred eeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcc
Q 003363 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (826)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~ 402 (826)
...+||++|+ ++++.++++.+......|.|||||++|+|.+.+. +
T Consensus 265 ----------g~~~I~~~d~-----------------~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~--------g 309 (429)
T PRK03629 265 ----------GSLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA--------G 309 (429)
T ss_pred ----------CCcEEEEEEC-----------------CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC--------C
Confidence 2237999998 7888899998877788999999999999999764 2
Q ss_pred cceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003363 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (826)
Q Consensus 403 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~ 482 (826)
..+||++|+.++..++++... .....+.|+|||+.|++.....+...|+.+|+++++.+.
T Consensus 310 ~~~Iy~~d~~~g~~~~lt~~~--------------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 310 RPQVYKVNINGGAPQRITWEG--------------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred CceEEEEECCCCCeEEeecCC--------------------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 468999999886554332110 012357899999999998877777899999999999999
Q ss_pred ecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 483 lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
|+.... ...+.|++||+.|++...... ...+++.++.+.
T Consensus 370 Lt~~~~-~~~p~~SpDG~~i~~~s~~~~-~~~l~~~~~~G~ 408 (429)
T PRK03629 370 LTDTFL-DETPSIAPNGTMVIYSSSQGM-GSVLNLVSTDGR 408 (429)
T ss_pred eCCCCC-CCCceECCCCCEEEEEEcCCC-ceEEEEEECCCC
Confidence 986532 235689999999998887543 345777776543
No 23
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=6.2e-21 Score=211.91 Aligned_cols=240 Identities=17% Similarity=0.181 Sum_probs=178.0
Q ss_pred CeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCC
Q 003363 166 SKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 244 (826)
Q Consensus 166 ~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~ 244 (826)
.+|||+.... +..+++..+. +...++++...... ..++|||||++|||.+...
T Consensus 164 ~~iayv~~~~-~~~~L~~~D~dG~~~~~l~~~~~~v----------~~p~wSPDG~~la~~s~~~--------------- 217 (427)
T PRK02889 164 TRIAYVIKTG-NRYQLQISDADGQNAQSALSSPEPI----------ISPAWSPDGTKLAYVSFES--------------- 217 (427)
T ss_pred cEEEEEEccC-CccEEEEECCCCCCceEeccCCCCc----------ccceEcCCCCEEEEEEccC---------------
Confidence 5799998543 4556776664 44455655433333 7899999999999987542
Q ss_pred CCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCccee
Q 003363 245 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 324 (826)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~ 324 (826)
+.++||++|+.+|+.+++. ........+.|||||+. |+|....
T Consensus 218 --------------------------~~~~I~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~~----la~~~~~----- 260 (427)
T PRK02889 218 --------------------------KKPVVYVHDLATGRRRVVA--NFKGSNSAPAWSPDGRT----LAVALSR----- 260 (427)
T ss_pred --------------------------CCcEEEEEECCCCCEEEee--cCCCCccceEECCCCCE----EEEEEcc-----
Confidence 3478999999999988883 33334567899999999 9997632
Q ss_pred eeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccc
Q 003363 325 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (826)
Q Consensus 325 ~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~ 404 (826)
+...+||.+|+ .++..++|+.+.+....|.|||||++|+|.+.+. +..
T Consensus 261 -------~g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~--------g~~ 308 (427)
T PRK02889 261 -------DGNSQIYTVNA-----------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRG--------GAP 308 (427)
T ss_pred -------CCCceEEEEEC-----------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCC--------CCc
Confidence 23358999998 7778889988776678899999999999988763 346
Q ss_pred eEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 405 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 405 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
+||.+++.++..++++... . ....+.|||||+.|++.+...+...|+.+|+.+++.++++
T Consensus 309 ~Iy~~~~~~g~~~~lt~~g-----------------~---~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 309 QIYRMPASGGAAQRVTFTG-----------------S---YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEEEECCCCceEEEecCC-----------------C---CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 8999998775543332110 0 1125689999999999887777789999999999999998
Q ss_pred CCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 485 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 485 ~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
.... ...+.|++||+.|++....... ..+++.++.+
T Consensus 369 ~~~~-~~~p~~spdg~~l~~~~~~~g~-~~l~~~~~~g 404 (427)
T PRK02889 369 DTTR-DESPSFAPNGRYILYATQQGGR-SVLAAVSSDG 404 (427)
T ss_pred CCCC-ccCceECCCCCEEEEEEecCCC-EEEEEEECCC
Confidence 6543 3456899999999998876554 5688877643
No 24
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=1.7e-20 Score=208.91 Aligned_cols=241 Identities=16% Similarity=0.180 Sum_probs=177.2
Q ss_pred CeEEEEecCCCC--CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCC
Q 003363 166 SKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 242 (826)
Q Consensus 166 ~~la~~~~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~ 242 (826)
.++||+....+. ..+++.++ ++.+.+.++...... ..+.|||||++|+|++.+.
T Consensus 183 ~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~----------~~p~wSPDG~~La~~s~~~------------- 239 (448)
T PRK04792 183 TRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPL----------MSPAWSPDGRKLAYVSFEN------------- 239 (448)
T ss_pred CEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcc----------cCceECCCCCEEEEEEecC-------------
Confidence 578888765422 23555555 444556666544333 6899999999999987543
Q ss_pred CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcc
Q 003363 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (826)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~ 322 (826)
+..+||++|+.+|+.+.++ ........+.|||||+. |+|+....
T Consensus 240 ----------------------------g~~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPDG~~----La~~~~~~-- 283 (448)
T PRK04792 240 ----------------------------RKAEIFVQDIYTQVREKVT--SFPGINGAPRFSPDGKK----LALVLSKD-- 283 (448)
T ss_pred ----------------------------CCcEEEEEECCCCCeEEec--CCCCCcCCeeECCCCCE----EEEEEeCC--
Confidence 3478999999999988883 32333457899999999 99986332
Q ss_pred eeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcc
Q 003363 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (826)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~ 402 (826)
...+||++|+ ++++.++|+.+......|.|||||++|+|.+.+. +
T Consensus 284 ----------g~~~Iy~~dl-----------------~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~--------g 328 (448)
T PRK04792 284 ----------GQPEIYVVDI-----------------ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG--------G 328 (448)
T ss_pred ----------CCeEEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC--------C
Confidence 2347999998 7888899998766778899999999999998764 3
Q ss_pred cceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003363 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (826)
Q Consensus 403 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~ 482 (826)
..+||++|+.+++.+.++... .+ ...+.|+|||+.|+|.....+..+||.+|+++++.+.
T Consensus 329 ~~~Iy~~dl~~g~~~~Lt~~g-----------------~~---~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 329 KPQIYRVNLASGKVSRLTFEG-----------------EQ---NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred CceEEEEECCCCCEEEEecCC-----------------CC---CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 468999999886654443110 01 1246899999999998877777899999999999998
Q ss_pred ecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 483 lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
|+....+ ..+.|++||+.|++...... -..|++.+..+
T Consensus 389 lt~~~~d-~~ps~spdG~~I~~~~~~~g-~~~l~~~~~~G 426 (448)
T PRK04792 389 LTSTRLD-ESPSVAPNGTMVIYSTTYQG-KQVLAAVSIDG 426 (448)
T ss_pred ccCCCCC-CCceECCCCCEEEEEEecCC-ceEEEEEECCC
Confidence 8865332 23579999999988876543 35688877643
No 25
>PRK10566 esterase; Provisional
Probab=99.87 E-value=5.9e-21 Score=197.48 Aligned_cols=231 Identities=16% Similarity=0.158 Sum_probs=152.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCC-chhhhhcCCCCC--CcchH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF-GEEALQSLPGKV--GSQDV 652 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~-G~~~~~~~~~~~--~~~~~ 652 (826)
+..+.|.|.+ ..+++.|+||++||.+.. ...+...++.|+++||.|+++|+||.+.. +..........+ .....
T Consensus 12 ~~~~~~~p~~-~~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~ 88 (249)
T PRK10566 12 IEVLHAFPAG-QRDTPLPTVFFYHGFTSS--KLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNM 88 (249)
T ss_pred cceEEEcCCC-CCCCCCCEEEEeCCCCcc--cchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHH
Confidence 3345667763 134568999999997654 34577788899999999999999995431 110000000000 11246
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEec-CCccchhhhccCCCCCCchhhhhccCcCC
Q 003363 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (826)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (826)
+|+.++++++.+++.+|.++|+++|||+||++++.++.++|+...++++. ++... ........+.. .. ..
T Consensus 89 ~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~-~~ 159 (249)
T PRK10566 89 QEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFT--SLARTLFPPLI------PE-TA 159 (249)
T ss_pred HHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHH--HHHHHhccccc------cc-cc
Confidence 78888899998887789999999999999999999999888754443332 22211 10000000000 00 00
Q ss_pred ccCCCCCChhhHHHHhhcCcccccCCC-CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCC--EEEEEeCCCCCCCCCCC
Q 003363 732 DSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVE--TKVIVFPNDVHGIERPQ 808 (826)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~--~~~~~~p~~~H~~~~~~ 808 (826)
... ....+....+...++...+.++ ++|+|++||++|..+|+.++++++++++.+|.+ ++++++++++|.+.
T Consensus 160 ~~~--~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~--- 234 (249)
T PRK10566 160 AQQ--AEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT--- 234 (249)
T ss_pred ccH--HHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC---
Confidence 000 0000111222334455556666 699999999999999999999999999998864 78999999999875
Q ss_pred CHHHHHHHHHHHHHHHc
Q 003363 809 SDFESFLNIGLWFKKYC 825 (826)
Q Consensus 809 ~~~~~~~~i~~w~~~~l 825 (826)
.+.+..+.+||+++|
T Consensus 235 --~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 235 --PEALDAGVAFFRQHL 249 (249)
T ss_pred --HHHHHHHHHHHHhhC
Confidence 357899999999886
No 26
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=2.5e-20 Score=207.84 Aligned_cols=242 Identities=14% Similarity=0.143 Sum_probs=177.5
Q ss_pred CCeEEEEecCCCC---CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCC
Q 003363 165 GSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 240 (826)
Q Consensus 165 G~~la~~~~~~~~---~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~ 240 (826)
+.+|||++...++ ..+++.++ ++...++++...... ..++|||||++|+|++...
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v----------~~p~wSpDg~~la~~s~~~----------- 225 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPI----------LSPAWSPDGKKLAYVSFER----------- 225 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCcc----------ccccCCCCCCEEEEEecCC-----------
Confidence 5678998764322 22444444 344566666543333 6899999999999986532
Q ss_pred CCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003363 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
+..+||++|+.+|+.+.+. ........+.|||||+. |+|.....
T Consensus 226 ------------------------------~~~~l~~~dl~~g~~~~l~--~~~g~~~~~~~SpDG~~----l~~~~s~~ 269 (433)
T PRK04922 226 ------------------------------GRSAIYVQDLATGQRELVA--SFRGINGAPSFSPDGRR----LALTLSRD 269 (433)
T ss_pred ------------------------------CCcEEEEEECCCCCEEEec--cCCCCccCceECCCCCE----EEEEEeCC
Confidence 3478999999999988884 22334457899999999 99986322
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCC
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 400 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~ 400 (826)
...+||++|+ .+++.++++.+......|.|||||++|+|.+.+.
T Consensus 270 ------------g~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~------- 313 (433)
T PRK04922 270 ------------GNPEIYVMDL-----------------GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG------- 313 (433)
T ss_pred ------------CCceEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC-------
Confidence 2348999998 7888899988766677899999999999998764
Q ss_pred cccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003363 401 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (826)
Q Consensus 401 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~ 480 (826)
+..+||++|+.+++.++++... .+ ...+.|||||+.|++.+...+...|+.+|+.+++.
T Consensus 314 -g~~~iy~~dl~~g~~~~lt~~g-----------------~~---~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 314 -GRPQIYRVAASGGSAERLTFQG-----------------NY---NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred -CCceEEEEECCCCCeEEeecCC-----------------CC---ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 2368999999886654443211 01 12578999999999987766677999999999999
Q ss_pred EEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 481 LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 481 ~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
+.|+.... .....|++||+.+++..... .-..|++.++.+
T Consensus 373 ~~Lt~~~~-~~~p~~spdG~~i~~~s~~~-g~~~L~~~~~~g 412 (433)
T PRK04922 373 RTLTPGSL-DESPSFAPNGSMVLYATREG-GRGVLAAVSTDG 412 (433)
T ss_pred EECCCCCC-CCCceECCCCCEEEEEEecC-CceEEEEEECCC
Confidence 99986543 23468999999999988763 335688888754
No 27
>PRK13604 luxD acyl transferase; Provisional
Probab=99.87 E-value=1.4e-20 Score=192.01 Aligned_cols=223 Identities=13% Similarity=0.085 Sum_probs=152.0
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCC-CCCchhhhhcCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKV 647 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~-~g~G~~~~~~~~~~~ 647 (826)
...+|..+.||+..|++. ...+.++||++||-... ...+...+.+|+++||+|+.+|+||+ |+++.++.+..
T Consensus 15 ~~~dG~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~--~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t---- 87 (307)
T PRK13604 15 CLENGQSIRVWETLPKEN-SPKKNNTILIASGFARR--MDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFT---- 87 (307)
T ss_pred EcCCCCEEEEEEEcCccc-CCCCCCEEEEeCCCCCC--hHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCc----
Confidence 445789999999999742 35678999999995543 23477889999999999999999875 55544432111
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhcc
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 727 (826)
......|+.++++|+.++. .++|+|+||||||.++..+|... .++++|+.+|+.++.......-...+.......
T Consensus 88 ~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~d~l~~~~~~~~~~~p~~~ 162 (307)
T PRK13604 88 MSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLRDTLERALGYDYLSLPIDE 162 (307)
T ss_pred ccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHHHHHHHhhhcccccCcccc
Confidence 1123789999999998863 46899999999999986666532 489999999999865332210000000000000
Q ss_pred CcCCccCCCCCC--hhhHHHH------hhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 728 SKGKDSFTESPS--VEDLTRF------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 728 ~~~~~~~~~~~~--~~~~~~~------~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
......+.+... ....... ...+|+..+.+++.|+|+|||+.|..||++.+++++++++. .+.+++++||
T Consensus 163 lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~kkl~~i~G 240 (307)
T PRK13604 163 LPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQCKLYSLIG 240 (307)
T ss_pred cccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCcEEEEeCC
Confidence 000000111111 0111111 12455677888899999999999999999999999998764 3589999999
Q ss_pred CCCCCC
Q 003363 800 DVHGIE 805 (826)
Q Consensus 800 ~~H~~~ 805 (826)
+.|.+.
T Consensus 241 a~H~l~ 246 (307)
T PRK13604 241 SSHDLG 246 (307)
T ss_pred CccccC
Confidence 999886
No 28
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=3.8e-20 Score=207.15 Aligned_cols=243 Identities=14% Similarity=0.163 Sum_probs=177.8
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 003363 164 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (826)
Q Consensus 164 dG~~la~~~~~~~~---~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~ 239 (826)
-..+|||++..... ..+++.++ +++..++++...... ..++|||||++|+|++.+.
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~wSpDG~~la~~s~~~---------- 220 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPI----------LSPRWSPDGKRIAYVSFEQ---------- 220 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCce----------eeeeECCCCCEEEEEEcCC----------
Confidence 45679998754322 23455555 444555555433332 6899999999999987543
Q ss_pred CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003363 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (826)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~ 319 (826)
+..+||++|+++|+.+.++ ........+.|||||+. |+|....
T Consensus 221 -------------------------------~~~~l~~~~l~~g~~~~l~--~~~g~~~~~~~SpDG~~----la~~~~~ 263 (430)
T PRK00178 221 -------------------------------KRPRIFVQNLDTGRREQIT--NFEGLNGAPAWSPDGSK----LAFVLSK 263 (430)
T ss_pred -------------------------------CCCEEEEEECCCCCEEEcc--CCCCCcCCeEECCCCCE----EEEEEcc
Confidence 3478999999999998884 33334457899999999 9998743
Q ss_pred CcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCC
Q 003363 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (826)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~ 399 (826)
. ...+||++|+ ++++.++|+........|.|||||++|+|.+.+.
T Consensus 264 ~------------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~------ 308 (430)
T PRK00178 264 D------------GNPEIYVMDL-----------------ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG------ 308 (430)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC------
Confidence 2 2348999998 7888889998777778899999999999998764
Q ss_pred CcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003363 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (826)
Q Consensus 400 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~ 479 (826)
+..+||++|+.+++..+++... . ....+.|+|||+.|++.....+...|+.+|+.+++
T Consensus 309 --g~~~iy~~d~~~g~~~~lt~~~-------------~-------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 309 --GKPQIYKVNVNGGRAERVTFVG-------------N-------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred --CCceEEEEECCCCCEEEeecCC-------------C-------CccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 3468999999887654433110 0 11256899999999998876677789999999999
Q ss_pred EEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003363 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (826)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 522 (826)
.+.|+....+ ....|++||+.+++....... ..|++.++.+
T Consensus 367 ~~~lt~~~~~-~~p~~spdg~~i~~~~~~~g~-~~l~~~~~~g 407 (430)
T PRK00178 367 VRILTDTSLD-ESPSVAPNGTMLIYATRQQGR-GVLMLVSING 407 (430)
T ss_pred EEEccCCCCC-CCceECCCCCEEEEEEecCCc-eEEEEEECCC
Confidence 9999875443 346899999999888765443 4588877653
No 29
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.86 E-value=2.1e-19 Score=201.04 Aligned_cols=254 Identities=16% Similarity=0.195 Sum_probs=182.3
Q ss_pred cceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-c
Q 003363 108 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-S 186 (826)
Q Consensus 108 g~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~ 186 (826)
+.+++|..... +.....||+++. .+...++++... ..+..|+|||||++|||+...+ +..+++.+. .
T Consensus 155 ~~~~~~~~~~~----~~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~ 222 (417)
T TIGR02800 155 STRIAYVSKSG----KSRRYELQVADY--DGANPQTITRSR-----EPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLA 222 (417)
T ss_pred CCEEEEEEEeC----CCCcceEEEEcC--CCCCCEEeecCC-----CceecccCCCCCCEEEEEEcCC-CCcEEEEEECC
Confidence 45666765443 235667888775 344566676554 3478899999999999997654 456677666 4
Q ss_pred CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCcc
Q 003363 187 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 266 (826)
Q Consensus 187 ~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 266 (826)
+++...+....... ..++|||||++|+|.....
T Consensus 223 ~g~~~~~~~~~~~~----------~~~~~spDg~~l~~~~~~~------------------------------------- 255 (417)
T TIGR02800 223 TGQREKVASFPGMN----------GAPAFSPDGSKLAVSLSKD------------------------------------- 255 (417)
T ss_pred CCCEEEeecCCCCc----------cceEECCCCCEEEEEECCC-------------------------------------
Confidence 55555554433222 5789999999999975432
Q ss_pred CCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccccc
Q 003363 267 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (826)
Q Consensus 267 ~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (826)
+..+||++|+.+++.+.+ +........+.|+|||++ |+|++.+.. ..+||.+|+
T Consensus 256 ----~~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~s~dg~~----l~~~s~~~g------------~~~iy~~d~---- 309 (417)
T TIGR02800 256 ----GNPDIYVMDLDGKQLTRL--TNGPGIDTEPSWSPDGKS----IAFTSDRGG------------SPQIYMMDA---- 309 (417)
T ss_pred ----CCccEEEEECCCCCEEEC--CCCCCCCCCEEECCCCCE----EEEEECCCC------------CceEEEEEC----
Confidence 346899999999998888 333334457899999999 999874321 237999998
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeee
Q 003363 347 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (826)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 426 (826)
.+++.++++........|.|||||++|+|..... +..+|+++|+.++..+.++...
T Consensus 310 -------------~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~--------~~~~i~~~d~~~~~~~~l~~~~--- 365 (417)
T TIGR02800 310 -------------DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG--------GGFNIAVMDLDGGGERVLTDTG--- 365 (417)
T ss_pred -------------CCCCEEEeecCCCCccCeEECCCCCEEEEEEccC--------CceEEEEEeCCCCCeEEccCCC---
Confidence 6777788887766778899999999999988653 3468999999875543332211
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~ 488 (826)
....+.|+|||+.|++.+...+...++.++.+++..+.++...+
T Consensus 366 ------------------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g 409 (417)
T TIGR02800 366 ------------------LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLGNG 409 (417)
T ss_pred ------------------CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCCCC
Confidence 12356899999999999888888889988887767777765543
No 30
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.85 E-value=7.2e-20 Score=197.57 Aligned_cols=246 Identities=15% Similarity=0.208 Sum_probs=159.1
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
+...+|..+++..+.|.+ .....++||++||.+... ...+...+..|+++||.|+++|+||.|. +.........
T Consensus 37 ~~~~dg~~l~~~~~~~~~--~~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rGhG~---S~~~~~~~~~ 110 (330)
T PLN02298 37 FTSPRGLSLFTRSWLPSS--SSPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEGHGR---SEGLRAYVPN 110 (330)
T ss_pred EEcCCCCEEEEEEEecCC--CCCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCCCCC---CCCccccCCC
Confidence 344578899998887753 224678999999975432 2245556778899999999999999543 3211000011
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCch------
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC------ 721 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~------ 721 (826)
.....+|+.++++++......+..+++|+||||||.+++.++.++|++++++|+.+|......... +.|.
T Consensus 111 ~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~----~~~~~~~~~~ 186 (330)
T PLN02298 111 VDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIR----PPWPIPQILT 186 (330)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccC----CchHHHHHHH
Confidence 122368899999998875434456899999999999999999999999999999998754321100 0010
Q ss_pred hhhhccCc-----C--------------------CccCCCCCChhhHHHHhh-c-CcccccCCCCCcEEEEEeCCCCCCC
Q 003363 722 YVESYGSK-----G--------------------KDSFTESPSVEDLTRFHS-K-SPISHISKVKTPTIFLLGAQDLRVP 774 (826)
Q Consensus 722 ~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~~-~-sp~~~~~~i~~PvLii~G~~D~~vp 774 (826)
....+... . ...+...+.......... . .....+.++++|+||+||++|.++|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~ivp 266 (330)
T PLN02298 187 FVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHGSADVVTD 266 (330)
T ss_pred HHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEecCCCCCCC
Confidence 00000000 0 000000000000000000 0 0123456789999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCC---HHHHHHHHHHHHHHHc
Q 003363 775 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQS---DFESFLNIGLWFKKYC 825 (826)
Q Consensus 775 ~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~---~~~~~~~i~~w~~~~l 825 (826)
++.++.+++++... ..+++++++++|.+...+. ...+...+.+|+.+++
T Consensus 267 ~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~ 318 (330)
T PLN02298 267 PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERC 318 (330)
T ss_pred HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999998887642 3688899999999764332 2457788999999876
No 31
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.85 E-value=9.1e-20 Score=197.70 Aligned_cols=240 Identities=17% Similarity=0.176 Sum_probs=179.8
Q ss_pred ccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCcc
Q 003363 123 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVH 201 (826)
Q Consensus 123 ~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~ 201 (826)
+.....++..+-+ +.....++... .....|.|||||++++|+.-..++.++++.+. ..+...++.......
T Consensus 169 ~~~~~~l~~~D~d--g~~~~~l~~~~-----~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~- 240 (425)
T COG0823 169 GPLPYELALGDYD--GYNQQKLTDSG-----SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN- 240 (425)
T ss_pred CCCCceEEEEccC--CcceeEecccC-----cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc-
Confidence 3456677776643 44455555554 34778999999999999987664547788777 666666666644333
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc
Q 003363 202 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 281 (826)
Q Consensus 202 g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 281 (826)
..++|||||++|+|...+. +..+||++|+.
T Consensus 241 ---------~~P~fspDG~~l~f~~~rd-----------------------------------------g~~~iy~~dl~ 270 (425)
T COG0823 241 ---------GAPAFSPDGSKLAFSSSRD-----------------------------------------GSPDIYLMDLD 270 (425)
T ss_pred ---------CCccCCCCCCEEEEEECCC-----------------------------------------CCccEEEEcCC
Confidence 6899999999999997765 45899999999
Q ss_pred CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC
Q 003363 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (826)
Q Consensus 282 ~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (826)
+++.++| +........+.|||||++ |||++++.+ ..+||++++ ++
T Consensus 271 ~~~~~~L--t~~~gi~~~Ps~spdG~~----ivf~Sdr~G------------~p~I~~~~~-----------------~g 315 (425)
T COG0823 271 GKNLPRL--TNGFGINTSPSWSPDGSK----IVFTSDRGG------------RPQIYLYDL-----------------EG 315 (425)
T ss_pred CCcceec--ccCCccccCccCCCCCCE----EEEEeCCCC------------CcceEEECC-----------------CC
Confidence 9998888 455445558999999999 999985433 238999998 88
Q ss_pred CcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC-CCcccceeeeeeeeeccCCCCCcc
Q 003363 362 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPG 440 (826)
Q Consensus 362 ~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~g 440 (826)
+..+++|...+....|.|||||++|+|.+... +...+...|+.++.. +.++...
T Consensus 316 ~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~--------g~~~i~~~~~~~~~~~~~lt~~~----------------- 370 (425)
T COG0823 316 SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG--------GQWDIDKNDLASGGKIRILTSTY----------------- 370 (425)
T ss_pred CceeEeeccCCCCcCccCCCCCCEEEEEeccC--------CceeeEEeccCCCCcEEEccccc-----------------
Confidence 88899999888878999999999999999442 226788888877663 2222221
Q ss_pred cccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 441 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 441 ~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
....+.|++||+.+++.+...+...++.++..+.....+.
T Consensus 371 ----~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 371 ----LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred ----cCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEe
Confidence 2246789999999999988888889999887544333443
No 32
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.85 E-value=3e-20 Score=182.97 Aligned_cols=250 Identities=15% Similarity=0.178 Sum_probs=174.3
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
-+++.+|..+....+.|.. ..+++.+|+++||.+... ...|...+..|+..||.|+++|++|.|. +......-.
T Consensus 31 ~~~n~rG~~lft~~W~p~~--~~~pr~lv~~~HG~g~~~-s~~~~~~a~~l~~~g~~v~a~D~~GhG~---SdGl~~yi~ 104 (313)
T KOG1455|consen 31 FFTNPRGAKLFTQSWLPLS--GTEPRGLVFLCHGYGEHS-SWRYQSTAKRLAKSGFAVYAIDYEGHGR---SDGLHAYVP 104 (313)
T ss_pred eEEcCCCCEeEEEecccCC--CCCCceEEEEEcCCcccc-hhhHHHHHHHHHhCCCeEEEeeccCCCc---CCCCcccCC
Confidence 4566788899999999974 347888999999965432 3567778899999999999999999544 332111112
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc------------cC
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------------GT 714 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~------------~~ 714 (826)
-...-++|+...++.++.+.....-+.+++||||||.+++.++.++|+.+.++|+.+|.+-+..-. -.
T Consensus 105 ~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~l~ 184 (313)
T KOG1455|consen 105 SFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTLLS 184 (313)
T ss_pred cHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHHHH
Confidence 223347888888888777654455679999999999999999999999999999999977542111 01
Q ss_pred CCCCCchhhhhcc---------------CcCCccCCCCCChhhH-HHHh-hcCcccccCCCCCcEEEEEeCCCCCCCcHH
Q 003363 715 TDIPDWCYVESYG---------------SKGKDSFTESPSVEDL-TRFH-SKSPISHISKVKTPTIFLLGAQDLRVPVSN 777 (826)
Q Consensus 715 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~-~~~~-~~sp~~~~~~i~~PvLii~G~~D~~vp~~~ 777 (826)
.-+|.|.....-. ......+.+.|..... +.++ .......+.+++.|+||+||+.|.++.+..
T Consensus 185 ~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~dD~VTDp~~ 264 (313)
T KOG1455|consen 185 KLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTDDKVTDPKV 264 (313)
T ss_pred HhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEecCCCcccCcHH
Confidence 1233443111100 0011122222222111 1111 112235678899999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCCCCC---CCCCHHHHHHHHHHHHHHH
Q 003363 778 GLQYARALREKGVETKVIVFPNDVHGIE---RPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 778 ~~~~~~~l~~~g~~~~~~~~p~~~H~~~---~~~~~~~~~~~i~~w~~~~ 824 (826)
++++|+..... +.++.+|||.-|.+. .+++...++..|++|++++
T Consensus 265 Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 265 SKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred HHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 99999998775 456779999999987 3566677899999999876
No 33
>PHA02857 monoglyceride lipase; Provisional
Probab=99.85 E-value=1.1e-19 Score=191.20 Aligned_cols=243 Identities=15% Similarity=0.147 Sum_probs=159.9
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
+.+.+|..+.+.+|.|. ..+.|+|+++||.+.. ...|...+..|+++||.|+++|+||.| .+.........
T Consensus 5 ~~~~~g~~l~~~~~~~~----~~~~~~v~llHG~~~~--~~~~~~~~~~l~~~g~~via~D~~G~G---~S~~~~~~~~~ 75 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPI----TYPKALVFISHGAGEH--SGRYEELAENISSLGILVFSHDHIGHG---RSNGEKMMIDD 75 (276)
T ss_pred eecCCCCEEEEEeccCC----CCCCEEEEEeCCCccc--cchHHHHHHHHHhCCCEEEEccCCCCC---CCCCccCCcCC
Confidence 45568889999999884 3456899999996544 567888899999999999999999954 33211110011
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh-------------ccC
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------------VGT 714 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-------------~~~ 714 (826)
....++|+...++++.+. ....++.|+|||+||.+++.++.++|++++++|+.+|..+.... ...
T Consensus 76 ~~~~~~d~~~~l~~~~~~--~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 76 FGVYVRDVVQHVVTIKST--YPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 112367777777776654 23467999999999999999999999999999999997542110 000
Q ss_pred CC-CC----Cchhh---h--hccCcCCccCCCCCChhhHHHHhh--cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHH
Q 003363 715 TD-IP----DWCYV---E--SYGSKGKDSFTESPSVEDLTRFHS--KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 782 (826)
Q Consensus 715 ~~-~~----~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~--~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~ 782 (826)
.. .. .+... + .+..... ................ ......+.++++|+|+++|++|.++|+..+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~ 232 (276)
T PHA02857 154 NKIVGKLCPESVSRDMDEVYKYQYDPL-VNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFM 232 (276)
T ss_pred CCccCCCCHhhccCCHHHHHHHhcCCC-ccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHH
Confidence 00 00 00000 0 0000000 0000000000000000 0112356788999999999999999999999998
Q ss_pred HHHHhCCCCEEEEEeCCCCCCCCCCCC--HHHHHHHHHHHHHHHc
Q 003363 783 RALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 825 (826)
Q Consensus 783 ~~l~~~g~~~~~~~~p~~~H~~~~~~~--~~~~~~~i~~w~~~~l 825 (826)
+.+.. .+++.++++++|.+..+.. ..++++.+.+||+++.
T Consensus 233 ~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 233 QHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred HHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 87743 4789999999999876644 6789999999999864
No 34
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.85 E-value=1e-19 Score=197.64 Aligned_cols=249 Identities=14% Similarity=0.154 Sum_probs=158.2
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
..+.+|..+.+..+.|. ...+.|+||++||.+... ...|...+..|+++||.|+++|+||.| .+.........
T Consensus 66 ~~~~~g~~l~~~~~~p~---~~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G~G---~S~~~~~~~~~ 138 (349)
T PLN02385 66 EVNSRGVEIFSKSWLPE---NSRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPGFG---LSEGLHGYIPS 138 (349)
T ss_pred EEcCCCCEEEEEEEecC---CCCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCCCC---CCCCCCCCcCC
Confidence 44567889999898886 235679999999965432 123456778899999999999999954 33211000001
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC------------C
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT------------T 715 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~------------~ 715 (826)
....++|+.+.++.+......+..++.|+||||||.+++.++.++|++++++|+.+|.......... .
T Consensus 139 ~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T PLN02385 139 FDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVLQILILLAN 218 (349)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHHHHHHHHHH
Confidence 1123567777777765543345568999999999999999999999999999999986542110000 0
Q ss_pred CCCCchh------hhh-ccCc--------CCccCCCCCChh-hHHHHhh-cCcccccCCCCCcEEEEEeCCCCCCCcHHH
Q 003363 716 DIPDWCY------VES-YGSK--------GKDSFTESPSVE-DLTRFHS-KSPISHISKVKTPTIFLLGAQDLRVPVSNG 778 (826)
Q Consensus 716 ~~~~~~~------~~~-~~~~--------~~~~~~~~~~~~-~~~~~~~-~sp~~~~~~i~~PvLii~G~~D~~vp~~~~ 778 (826)
..+.+.. ... +... ....+...+... ..+.+.. ......+.++++|+|++||++|.++|+..+
T Consensus 219 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~D~vv~~~~~ 298 (349)
T PLN02385 219 LLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEADKVTDPSVS 298 (349)
T ss_pred HCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCCCCccChHHH
Confidence 0000000 000 0000 000000000000 0111111 111234678899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCH---HHHHHHHHHHHHHHc
Q 003363 779 LQYARALREKGVETKVIVFPNDVHGIERPQSD---FESFLNIGLWFKKYC 825 (826)
Q Consensus 779 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~---~~~~~~i~~w~~~~l 825 (826)
+.+++.+.. .+.+++++|+++|.+...+.. ..++..|.+||++++
T Consensus 299 ~~l~~~~~~--~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 299 KFLYEKASS--SDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred HHHHHHcCC--CCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 999888753 246888999999998654432 348889999999886
No 35
>PLN02442 S-formylglutathione hydrolase
Probab=99.84 E-value=1.7e-19 Score=188.51 Aligned_cols=233 Identities=15% Similarity=0.130 Sum_probs=151.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch---HHHHHHHHCCcEEEEECCCCCC--C----------Cc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSL--G----------FG 636 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vl~~d~rG~~--g----------~G 636 (826)
-+..+...+|.|+. ...+++|+|+++||++... ..|. ...+.++..||+|+.+|..+.+ . .|
T Consensus 28 l~~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~--~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~ 104 (283)
T PLN02442 28 LGCSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTD--ENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVG 104 (283)
T ss_pred cCCceEEEEEcCCc-ccCCCCCEEEEecCCCcCh--HHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCC
Confidence 35668888999983 3467899999999976543 2232 2345667889999999975422 1 11
Q ss_pred hhhh-hcCCCCCC-----cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh
Q 003363 637 EEAL-QSLPGKVG-----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (826)
Q Consensus 637 ~~~~-~~~~~~~~-----~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 710 (826)
..+. +.....+. ....+++...++...+ .+|.++++|+|+||||++++.++.++|++|+++++.+|++++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~ 182 (283)
T PLN02442 105 AGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFD--QLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIANPIN 182 (283)
T ss_pred cceeeccccCCCcccchhhhHHHHHHHHHHHHHH--hcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccCccc
Confidence 1110 00011111 1123334333333322 26889999999999999999999999999999999999877431
Q ss_pred hccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcH-HHHHHHHHHHhCC
Q 003363 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKG 789 (826)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~-~~~~~~~~l~~~g 789 (826)
. .|.. .. ...+.+.+ .+..+.+...+++..+...++|+|++||++|.+++.. ++..+++++++.|
T Consensus 183 ~-------~~~~-~~-----~~~~~g~~-~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g 248 (283)
T PLN02442 183 C-------PWGQ-KA-----FTNYLGSD-KADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEACKEAG 248 (283)
T ss_pred C-------chhh-HH-----HHHHcCCC-hhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHHHHcC
Confidence 1 0110 00 00111111 2233444445555666677899999999999999874 6889999999999
Q ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 790 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 790 ~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
.++++.++|+.+|.+. ....+..+.+.|..+++|
T Consensus 249 ~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 249 APVTLRLQPGYDHSYF---FIATFIDDHINHHAQALK 282 (283)
T ss_pred CCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHhc
Confidence 9999999999999865 222334445556655553
No 36
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=1.1e-18 Score=194.09 Aligned_cols=233 Identities=17% Similarity=0.156 Sum_probs=162.3
Q ss_pred CCeEEEEecCCCC--CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCC
Q 003363 165 GSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (826)
Q Consensus 165 G~~la~~~~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~ 241 (826)
+++|||++...++ ...++..+ ++...+.++...... ..+.|||||++|||++.+.
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v----------~~p~wSPDG~~la~~s~~~------------ 225 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPL----------MSPAWSPDGSKLAYVSFEN------------ 225 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCcc----------ccceEcCCCCEEEEEEecC------------
Confidence 6899999865432 23444444 344444444432223 7899999999999987543
Q ss_pred CCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCc
Q 003363 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (826)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~ 321 (826)
..++||++|+.+|+.+.+. ........++|||||+. |+|.....
T Consensus 226 -----------------------------~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPDG~~----La~~~~~~- 269 (429)
T PRK01742 226 -----------------------------KKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPDGSR----LAFASSKD- 269 (429)
T ss_pred -----------------------------CCcEEEEEeCCCCceEEEe--cCCCccCceeECCCCCE----EEEEEecC-
Confidence 3478999999999887773 22223457899999999 99986322
Q ss_pred ceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCc
Q 003363 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (826)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~ 401 (826)
...+||.+|+ .++..++|+.+......|.|||||++|+|.+.+.
T Consensus 270 -----------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~-------- 313 (429)
T PRK01742 270 -----------GVLNIYVMGA-----------------NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRS-------- 313 (429)
T ss_pred -----------CcEEEEEEEC-----------------CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCC--------
Confidence 2236999998 7788899998877788999999999999998764
Q ss_pred ccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 402 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
+..+||.++..++....++. . . ..+.|+|||+.|++... ..++.+|+.+|+.+
T Consensus 314 g~~~I~~~~~~~~~~~~l~~-----------------~-----~-~~~~~SpDG~~ia~~~~----~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGG-----------------R-----G-YSAQISADGKTLVMING----DNVVKQDLTSGSTE 366 (429)
T ss_pred CCceEEEEECCCCCeEEecC-----------------C-----C-CCccCCCCCCEEEEEcC----CCEEEEECCCCCeE
Confidence 34689999876644322110 0 1 24579999999988653 35778999999988
Q ss_pred EecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 003363 482 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 482 ~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 520 (826)
.++.... .....|+|||+.+++.... ..-..+++.+.
T Consensus 367 ~lt~~~~-~~~~~~sPdG~~i~~~s~~-g~~~~l~~~~~ 403 (429)
T PRK01742 367 VLSSTFL-DESPSISPNGIMIIYSSTQ-GLGKVLQLVSA 403 (429)
T ss_pred EecCCCC-CCCceECCCCCEEEEEEcC-CCceEEEEEEC
Confidence 8875432 2446799999988888754 33333444443
No 37
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.82 E-value=6.1e-19 Score=193.44 Aligned_cols=232 Identities=14% Similarity=0.135 Sum_probs=150.6
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
.+|..+.|+++.|+ ..++.|+||+.|| ..+.....|...+..|+++||+|+++|+||.|..... + ....
T Consensus 176 ~~g~~l~g~l~~P~---~~~~~P~Vli~gG-~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~-----~--~~~d 244 (414)
T PRK05077 176 PGGGPITGFLHLPK---GDGPFPTVLVCGG-LDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSKW-----K--LTQD 244 (414)
T ss_pred CCCcEEEEEEEECC---CCCCccEEEEeCC-cccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCCC-----C--cccc
Confidence 45668999999997 3567898776555 3332223466677889999999999999995432110 0 1111
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh-hhcc-CCCCCCchhhhhccC
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LMVG-TTDIPDWCYVESYGS 728 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-~~~~-~~~~~~~~~~~~~~~ 728 (826)
......++++++.+.+.+|.+||+++|||+||++++.++..+|++++++|+.+|+++.. .... ....+.. +...+..
T Consensus 245 ~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~p~~-~~~~la~ 323 (414)
T PRK05077 245 SSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQVPEM-YLDVLAS 323 (414)
T ss_pred HHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhhchHH-HHHHHHH
Confidence 12233577889988888999999999999999999999998899999999999876421 0000 0000100 0000000
Q ss_pred cCCccCCC-CCChhh-HHHHhhcCcc--cc-cCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 729 KGKDSFTE-SPSVED-LTRFHSKSPI--SH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 729 ~~~~~~~~-~~~~~~-~~~~~~~sp~--~~-~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
.+.. ....+. ...+...+.. .. ..++++|+|++||++|.++|+++++.+.+... +.+++++|++ |.
T Consensus 324 ----~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~----~~~l~~i~~~-~~ 394 (414)
T PRK05077 324 ----RLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSA----DGKLLEIPFK-PV 394 (414)
T ss_pred ----HhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCC----CCeEEEccCC-Cc
Confidence 0000 001111 1111112211 11 25789999999999999999999987766554 3688999986 32
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcC
Q 003363 804 IERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 804 ~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
+ +...+++..+.+||+++|.
T Consensus 395 ~---e~~~~~~~~i~~wL~~~l~ 414 (414)
T PRK05077 395 Y---RNFDKALQEISDWLEDRLC 414 (414)
T ss_pred c---CCHHHHHHHHHHHHHHHhC
Confidence 2 3456889999999999873
No 38
>PRK10749 lysophospholipase L2; Provisional
Probab=99.82 E-value=6.3e-19 Score=189.57 Aligned_cols=248 Identities=18% Similarity=0.230 Sum_probs=155.8
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
.+...+|..+++..+.|. .+.++||++||.... ...|...+..|+++||.|+++|+||.|.++........+.
T Consensus 34 ~~~~~~g~~l~~~~~~~~-----~~~~~vll~HG~~~~--~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~ 106 (330)
T PRK10749 34 EFTGVDDIPIRFVRFRAP-----HHDRVVVICPGRIES--YVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGH 106 (330)
T ss_pred EEEcCCCCEEEEEEccCC-----CCCcEEEEECCccch--HHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCc
Confidence 445567788888777653 234789999996433 3356677778899999999999999654432211000011
Q ss_pred C--CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc-----------
Q 003363 647 V--GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----------- 713 (826)
Q Consensus 647 ~--~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----------- 713 (826)
. ...-++|+.++++.+.+. .+..++.++||||||.+++.++.++|+.++++|+.+|.........
T Consensus 107 ~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~ 184 (330)
T PRK10749 107 VERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARRILNWA 184 (330)
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHHHHHHH
Confidence 1 111245566666655443 2457899999999999999999999999999999998653210000
Q ss_pred --CCC--------CCCchhhhhccCc-----------CCccCCCCC-------ChhhH-HHHhh-cCcccccCCCCCcEE
Q 003363 714 --TTD--------IPDWCYVESYGSK-----------GKDSFTESP-------SVEDL-TRFHS-KSPISHISKVKTPTI 763 (826)
Q Consensus 714 --~~~--------~~~~~~~~~~~~~-----------~~~~~~~~~-------~~~~~-~~~~~-~sp~~~~~~i~~PvL 763 (826)
... ...|.... +... ....+...+ ..... ..+.. ......+.++++|+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~L 263 (330)
T PRK10749 185 EGHPRIRDGYAIGTGRWRPLP-FAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLAGAGDITTPLL 263 (330)
T ss_pred HHhcCCCCcCCCCCCCCCCCC-cCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHhhccCCCCCEE
Confidence 000 00000000 0000 000000000 00000 00000 011234677899999
Q ss_pred EEEeCCCCCCCcHHHHHHHHHHHhCC---CCEEEEEeCCCCCCCCCCCC--HHHHHHHHHHHHHHH
Q 003363 764 FLLGAQDLRVPVSNGLQYARALREKG---VETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKY 824 (826)
Q Consensus 764 ii~G~~D~~vp~~~~~~~~~~l~~~g---~~~~~~~~p~~~H~~~~~~~--~~~~~~~i~~w~~~~ 824 (826)
++||++|..++++.++.+++.+++.+ ..+++++|||++|.+..+.. ...+++.|++||+++
T Consensus 264 ii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 264 LLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred EEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998765 34689999999999876554 667889999999875
No 39
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.82 E-value=2.4e-19 Score=180.99 Aligned_cols=204 Identities=24% Similarity=0.323 Sum_probs=142.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCC--Cchh-----hhhcCCCCCC
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG--FGEE-----ALQSLPGKVG 648 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g--~G~~-----~~~~~~~~~~ 648 (826)
+.+++..|.+ .++.|.||++|+..+. .......+..|+++||.|++||+-+..+ .... ..........
T Consensus 1 ~~ay~~~P~~---~~~~~~Vvv~~d~~G~--~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (218)
T PF01738_consen 1 IDAYVARPEG---GGPRPAVVVIHDIFGL--NPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRP 75 (218)
T ss_dssp EEEEEEEETT---SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSH
T ss_pred CeEEEEeCCC---CCCCCEEEEEcCCCCC--chHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhH
Confidence 4678999984 3789999999995543 2445567889999999999999755332 1110 0000000011
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccC
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 728 (826)
.....|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++++|...|...
T Consensus 76 ~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------------- 133 (218)
T PF01738_consen 76 EQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------------- 133 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------------
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------------
Confidence 22357888999999998878899999999999999999998876 68999998877100
Q ss_pred cCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCC
Q 003363 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 808 (826)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~ 808 (826)
+ ..+.....++++|+|+++|+.|+.++.+...++.+.|+++|.++++++|||++|+|..+.
T Consensus 134 ---------~----------~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 134 ---------P----------PPPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp ---------G----------GGHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred ---------C----------CcchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 0 001223456789999999999999999999999999999999999999999999997543
Q ss_pred C-------HHHHHHHHHHHHHHHc
Q 003363 809 S-------DFESFLNIGLWFKKYC 825 (826)
Q Consensus 809 ~-------~~~~~~~i~~w~~~~l 825 (826)
. ..+.++++++||++||
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 3 3578889999999987
No 40
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.81 E-value=5.4e-18 Score=189.59 Aligned_cols=244 Identities=15% Similarity=0.147 Sum_probs=177.4
Q ss_pred CCCCCeEEEEecCC-CCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCC
Q 003363 162 SPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (826)
Q Consensus 162 SPdG~~la~~~~~~-~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~ 239 (826)
.+.|.+++|++... ++...++.++ +++..++++...... ..+.|||||++|||.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~~Spdg~~la~~~~~~---------- 211 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPI----------LSPAWSPDGQKLAYVSFES---------- 211 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCce----------ecccCCCCCCEEEEEEcCC----------
Confidence 45678899998764 3455577666 445666666543323 6889999999999986432
Q ss_pred CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003363 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (826)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~ 319 (826)
+...|+++|+.+|+.+.+. ........+.|+|||+. |+|....
T Consensus 212 -------------------------------~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~spDg~~----l~~~~~~ 254 (417)
T TIGR02800 212 -------------------------------GKPEIYVQDLATGQREKVA--SFPGMNGAPAFSPDGSK----LAVSLSK 254 (417)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEee--cCCCCccceEECCCCCE----EEEEECC
Confidence 2368999999999887773 33334456899999999 9987632
Q ss_pred CcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCC
Q 003363 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (826)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~ 399 (826)
+....||.+|+ .++..++|+........|.|+|||++|+|.+.+.
T Consensus 255 ------------~~~~~i~~~d~-----------------~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~------ 299 (417)
T TIGR02800 255 ------------DGNPDIYVMDL-----------------DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG------ 299 (417)
T ss_pred ------------CCCccEEEEEC-----------------CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCC------
Confidence 12347999998 7778888887766667899999999999998764
Q ss_pred CcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003363 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (826)
Q Consensus 400 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~ 479 (826)
+..+||++|+.+++...++... .....+.|+|||+.|+++....+...|+.+|+.++.
T Consensus 300 --g~~~iy~~d~~~~~~~~l~~~~--------------------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 300 --GSPQIYMMDADGGEVRRLTFRG--------------------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred --CCceEEEEECCCCCEEEeecCC--------------------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 2358999998876543332111 012367899999999998776677899999999988
Q ss_pred EEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
.+.++.... .....|++||+.+++....... ..+++.+..
T Consensus 358 ~~~l~~~~~-~~~p~~spdg~~l~~~~~~~~~-~~l~~~~~~ 397 (417)
T TIGR02800 358 ERVLTDTGL-DESPSFAPNGRMILYATTRGGR-GVLGLVSTD 397 (417)
T ss_pred eEEccCCCC-CCCceECCCCCEEEEEEeCCCc-EEEEEEECC
Confidence 888876433 2345799999999988876554 467766643
No 41
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.80 E-value=2.9e-18 Score=179.08 Aligned_cols=233 Identities=11% Similarity=0.053 Sum_probs=151.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHH-HHCCcEEEEECC--CCCCCCch--hhh------
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNY--RGSLGFGE--EAL------ 640 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~l-a~~G~~Vl~~d~--rG~~g~G~--~~~------ 640 (826)
-+.++.+.+|.|+++. .+++|+|+++||.+.......+...++.+ ++.||.|++||. ||.+..+. .|.
T Consensus 23 ~~~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~ 101 (275)
T TIGR02821 23 CGVPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAG 101 (275)
T ss_pred cCCceEEEEEcCCCcc-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCcc
Confidence 3567888999998643 45689999999977553221112223344 567999999997 55432221 110
Q ss_pred ---hcCCCCCC--cchHHHHHHHHHHHHHc-CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC
Q 003363 641 ---QSLPGKVG--SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (826)
Q Consensus 641 ---~~~~~~~~--~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~ 714 (826)
+.....+. ......+...+..+++. ..+|.++++|+|+||||++++.++.++|+.|+++++.+|+.+....
T Consensus 102 ~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~~--- 178 (275)
T TIGR02821 102 FYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVAPSRC--- 178 (275)
T ss_pred ccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccCcccC---
Confidence 00000000 01123334444444443 4478899999999999999999999999999999999998764311
Q ss_pred CCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccC--CCCCcEEEEEeCCCCCCCc-HHHHHHHHHHHhCCCC
Q 003363 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS--KVKTPTIFLLGAQDLRVPV-SNGLQYARALREKGVE 791 (826)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~--~i~~PvLii~G~~D~~vp~-~~~~~~~~~l~~~g~~ 791 (826)
....... .. +.+... +.+...+|...+. ...+|++++||+.|..+|. .+...+.++|+++|++
T Consensus 179 -~~~~~~~-~~--------~l~~~~----~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~ 244 (275)
T TIGR02821 179 -PWGQKAF-SA--------YLGADE----AAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAAGQA 244 (275)
T ss_pred -cchHHHH-HH--------Hhcccc----cchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHcCCC
Confidence 0000001 10 111111 1122334444333 2458999999999999999 6889999999999999
Q ss_pred EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 792 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 792 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+++.++||++|++... .....+.++|+.+++
T Consensus 245 v~~~~~~g~~H~f~~~---~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 245 LTLRRQAGYDHSYYFI---ASFIADHLRHHAERL 275 (275)
T ss_pred eEEEEeCCCCccchhH---HHhHHHHHHHHHhhC
Confidence 9999999999998633 355678888887764
No 42
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.80 E-value=7.6e-19 Score=164.21 Aligned_cols=210 Identities=17% Similarity=0.201 Sum_probs=153.6
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
..|+++||..++ ......+.++|.++||.|.+|+|+|++-....+....+..| ++|+.++.++|.+.++ +.
T Consensus 16 ~AVLllHGFTGt--~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~e 86 (243)
T COG1647 16 RAVLLLHGFTGT--PRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---DE 86 (243)
T ss_pred EEEEEEeccCCC--cHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---Ce
Confidence 789999996555 56778889999999999999999997665556554444443 7899999999998764 78
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC-CCCCCchhhhhccCcCCccCCCCCChhhHHHHhhc--
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK-- 749 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 749 (826)
|+++|.||||.+++.++.++| .+++|.+|+..+....... ...-. +... .+.+.+.......+.+...
T Consensus 87 I~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~--y~~~-----~kk~e~k~~e~~~~e~~~~~~ 157 (243)
T COG1647 87 IAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLE--YFRN-----AKKYEGKDQEQIDKEMKSYKD 157 (243)
T ss_pred EEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHH--HHHH-----hhhccCCCHHHHHHHHHHhhc
Confidence 999999999999999999988 7888877776543211000 00000 0011 1111111111111112211
Q ss_pred --------------CcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHH
Q 003363 750 --------------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFL 815 (826)
Q Consensus 750 --------------sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~ 815 (826)
.....++.|..|+|++.|.+|+.||.+.+..+++.+.. .+.++.+|++.||.+.....+.++.+
T Consensus 158 ~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~Erd~v~e 235 (243)
T COG1647 158 TPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES--DDKELKWLEGSGHVITLDKERDQVEE 235 (243)
T ss_pred chHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC--CcceeEEEccCCceeecchhHHHHHH
Confidence 12356788999999999999999999999999999876 46789999999999998888889999
Q ss_pred HHHHHHH
Q 003363 816 NIGLWFK 822 (826)
Q Consensus 816 ~i~~w~~ 822 (826)
.+..||+
T Consensus 236 ~V~~FL~ 242 (243)
T COG1647 236 DVITFLE 242 (243)
T ss_pred HHHHHhh
Confidence 9999996
No 43
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.80 E-value=6.1e-18 Score=183.89 Aligned_cols=246 Identities=13% Similarity=0.122 Sum_probs=156.5
Q ss_pred eccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
+...++..+.+..+.|. ...+.|+||++||.+.. ...|...+..|+++||.|+++|+||.+..... ......
T Consensus 115 ~~~~~~~~l~~~~~~p~---~~~~~~~Vl~lHG~~~~--~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~---~~~~~~ 186 (395)
T PLN02652 115 FYGARRNALFCRSWAPA---AGEMRGILIIIHGLNEH--SGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGL---HGYVPS 186 (395)
T ss_pred EECCCCCEEEEEEecCC---CCCCceEEEEECCchHH--HHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC---CCCCcC
Confidence 44556677888888875 34457899999997644 34577788899999999999999995543221 111111
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccchhhhcc---------CC
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVG---------TT 715 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~~~~~---------~~ 715 (826)
.....+|+.++++++.... +..++.|+||||||.+++.++. +|+ +++++|+.+|...+..... ..
T Consensus 187 ~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~~~~~l~~~ 263 (395)
T PLN02652 187 LDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVGAVAPIFSL 263 (395)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHHHHHHHHHH
Confidence 1223578888888887652 2357999999999999987664 564 7999999999764321000 00
Q ss_pred CCCCchhhh--hccCc------C-CccC------CCCCChhhHHHHhhcC--cccccCCCCCcEEEEEeCCCCCCCcHHH
Q 003363 716 DIPDWCYVE--SYGSK------G-KDSF------TESPSVEDLTRFHSKS--PISHISKVKTPTIFLLGAQDLRVPVSNG 778 (826)
Q Consensus 716 ~~~~~~~~~--~~~~~------~-~~~~------~~~~~~~~~~~~~~~s--p~~~~~~i~~PvLii~G~~D~~vp~~~~ 778 (826)
-.+.+.+.. ..+.. . ...+ .+.............. ....+.++++|+|++||++|..+|++++
T Consensus 264 ~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D~vvp~~~a 343 (395)
T PLN02652 264 VAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTADRVTDPLAS 343 (395)
T ss_pred hCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCCCCCHHHH
Confidence 000000000 00000 0 0000 0000000000000000 1234678899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 779 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 779 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
.++++.+... ..++++||+++|.+..+....++++.+.+||..+++
T Consensus 344 ~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 344 QDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred HHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 9999987542 467788999999987666677899999999998763
No 44
>PRK10162 acetyl esterase; Provisional
Probab=99.79 E-value=2.3e-17 Score=175.58 Aligned_cols=221 Identities=14% Similarity=0.152 Sum_probs=154.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCCcchH
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~ 652 (826)
.+...+|.|.. ...|+||++|||++.... ..+...+..|+. .|+.|+.+|||.++++ .....+
T Consensus 68 ~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~-----------~~p~~~ 132 (318)
T PRK10162 68 QVETRLYYPQP----DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA-----------RFPQAI 132 (318)
T ss_pred ceEEEEECCCC----CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC-----------CCCCcH
Confidence 58889999852 246999999999876443 345566777776 6999999999986542 123358
Q ss_pred HHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhC------CCceeEEEecCCccchhhhccCCCCCCchhh
Q 003363 653 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (826)
Q Consensus 653 ~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 723 (826)
+|+.++++|+.++ ..+|++||+|+|+|+||.+++.++.+. +..++++++.+|+.+.... +.+.
T Consensus 133 ~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~~~------~s~~-- 204 (318)
T PRK10162 133 EEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDS------VSRR-- 204 (318)
T ss_pred HHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCCCC------hhHH--
Confidence 9999999998764 347899999999999999999988643 3578899999998774211 0000
Q ss_pred hhccCcCCccCCCCCChhhHHHH----h-----hcCccc-----ccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCC
Q 003363 724 ESYGSKGKDSFTESPSVEDLTRF----H-----SKSPIS-----HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 789 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~----~-----~~sp~~-----~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g 789 (826)
.++.. +.. ...+....+ . ..+|.. .+...-+|++|++|+.|..+ .+++.++++|+++|
T Consensus 205 -~~~~~----~~~-l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~L~~aG 276 (318)
T PRK10162 205 -LLGGV----WDG-LTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQTLAAHQ 276 (318)
T ss_pred -HhCCC----ccc-cCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHHHHHcC
Confidence 00000 000 000111100 0 112221 11122379999999999987 68999999999999
Q ss_pred CCEEEEEeCCCCCCCCCC----CCHHHHHHHHHHHHHHHcC
Q 003363 790 VETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 790 ~~~~~~~~p~~~H~~~~~----~~~~~~~~~i~~w~~~~l~ 826 (826)
+++++++++|..|++... +...+.+..+.+||+++++
T Consensus 277 v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 277 QPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred CCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999997532 2244778899999999875
No 45
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.78 E-value=1.4e-17 Score=180.69 Aligned_cols=206 Identities=18% Similarity=0.220 Sum_probs=160.2
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
..+.|||||++|+|.+.... +.+++|++|+++++...+
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~----------------------------------------~~~~i~~~~l~~g~~~~i-- 233 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELG----------------------------------------GCPRIYYLDLNTGKRPVI-- 233 (425)
T ss_pred eccccCcCCCceEEEEEecC----------------------------------------CCceEEEEeccCCcccee--
Confidence 68999999999999854431 227899999999987777
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
.........+.|||||++ |+|+..+ +...+||.+|+ .++...+|+..
T Consensus 234 ~~~~g~~~~P~fspDG~~----l~f~~~r------------dg~~~iy~~dl-----------------~~~~~~~Lt~~ 280 (425)
T COG0823 234 LNFNGNNGAPAFSPDGSK----LAFSSSR------------DGSPDIYLMDL-----------------DGKNLPRLTNG 280 (425)
T ss_pred eccCCccCCccCCCCCCE----EEEEECC------------CCCccEEEEcC-----------------CCCcceecccC
Confidence 444556778999999999 9999843 34468999999 77778889999
Q ss_pred CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCc
Q 003363 371 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 450 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 450 (826)
.+....|.|||||++|+|.+.+. +..+||++|++++...+++.... +...+.
T Consensus 281 ~gi~~~Ps~spdG~~ivf~Sdr~--------G~p~I~~~~~~g~~~~riT~~~~--------------------~~~~p~ 332 (425)
T COG0823 281 FGINTSPSWSPDGSKIVFTSDRG--------GRPQIYLYDLEGSQVTRLTFSGG--------------------GNSNPV 332 (425)
T ss_pred CccccCccCCCCCCEEEEEeCCC--------CCcceEEECCCCCceeEeeccCC--------------------CCcCcc
Confidence 88888999999999999999885 34589999999988766554331 112678
Q ss_pred cccCCCEEEEEEEeCCeEEEEEEECCCCc-EEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 451 WLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 451 ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~-~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
|||||++|+|....++...+...|+.++. .+.++.... .....+++++..+++..... .-+.++..++.
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~-~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~ 402 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL-NESPSWAPNGRMIMFSSGQG-GGSVLSLVSLD 402 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc-CCCCCcCCCCceEEEeccCC-CCceEEEeecc
Confidence 99999999999866666788888887777 666655443 33467899999999988777 44556666544
No 46
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.77 E-value=2.8e-17 Score=165.47 Aligned_cols=207 Identities=21% Similarity=0.259 Sum_probs=160.3
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhh----hcCC----
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL----QSLP---- 644 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~----~~~~---- 644 (826)
+.++.+++..|+ ...+.|.||++|+-.+. .......++.|+.+||.|++||+-+..+...... ....
T Consensus 11 ~~~~~~~~a~P~---~~~~~P~VIv~hei~Gl--~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~ 85 (236)
T COG0412 11 DGELPAYLARPA---GAGGFPGVIVLHEIFGL--NPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVE 85 (236)
T ss_pred CceEeEEEecCC---cCCCCCEEEEEecccCC--chHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhc
Confidence 378999999998 44555999999996554 3466778899999999999999754222211111 0000
Q ss_pred CCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhh
Q 003363 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (826)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 724 (826)
.........|+.+++++|.+++.++.++|+++|+|+||.+++.++.+.| .++++|+..|..-. .
T Consensus 86 ~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~----------~----- 149 (236)
T COG0412 86 RVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIA----------D----- 149 (236)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCC----------C-----
Confidence 0111345789999999999998899999999999999999999999866 78999887663210 0
Q ss_pred hccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
......++++|+|+.+|+.|..+|......+.+++...++.+++.+|+++.|+|
T Consensus 150 --------------------------~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F 203 (236)
T COG0412 150 --------------------------DTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203 (236)
T ss_pred --------------------------cccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCcccc
Confidence 001146788999999999999999999999999999998899999999999999
Q ss_pred CCCC----------CHHHHHHHHHHHHHHHcC
Q 003363 805 ERPQ----------SDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 805 ~~~~----------~~~~~~~~i~~w~~~~l~ 826 (826)
..+. ...+.++++++||+++++
T Consensus 204 ~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 204 ANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred ccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 8553 234788999999999874
No 47
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.76 E-value=2.6e-17 Score=172.81 Aligned_cols=241 Identities=18% Similarity=0.194 Sum_probs=153.0
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcC---
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL--- 643 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~--- 643 (826)
.+.+-+|..++|+++.|++ ..++.|+||.+||.+.. ...+. ....++.+||+|+.+|.||.++...+.....
T Consensus 60 ~f~s~~g~~V~g~l~~P~~--~~~~~Pavv~~hGyg~~--~~~~~-~~~~~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~ 134 (320)
T PF05448_consen 60 SFESFDGSRVYGWLYRPKN--AKGKLPAVVQFHGYGGR--SGDPF-DLLPWAAAGYAVLAMDVRGQGGRSPDYRGSSGGT 134 (320)
T ss_dssp EEEEGGGEEEEEEEEEES---SSSSEEEEEEE--TT----GGGHH-HHHHHHHTT-EEEEE--TTTSSSS-B-SSBSSS-
T ss_pred EEEccCCCEEEEEEEecCC--CCCCcCEEEEecCCCCC--CCCcc-cccccccCCeEEEEecCCCCCCCCCCccccCCCC
Confidence 5666678999999999985 46899999999996544 22222 2345789999999999999774332211100
Q ss_pred -C-----------CC-CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc-cchh
Q 003363 644 -P-----------GK-VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL-CNLA 709 (826)
Q Consensus 644 -~-----------~~-~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~-~~~~ 709 (826)
. .. +....+.|+..++++|...+.+|++||++.|.|.||.+++.+++..+ +++++++..|. +|+.
T Consensus 135 ~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~d~~ 213 (320)
T PF05448_consen 135 LKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLCDFR 213 (320)
T ss_dssp SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSSSHH
T ss_pred CccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCccchh
Confidence 0 00 01123589999999999999999999999999999999999999864 69999888884 4444
Q ss_pred hhccCCC-CCCchhhhhccCcCCccCCCCC--ChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHH
Q 003363 710 LMVGTTD-IPDWCYVESYGSKGKDSFTESP--SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 786 (826)
Q Consensus 710 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~ 786 (826)
....... ...|.....+-. .....+ ..+..+.+...+....++.|++|+|+..|-.|..||+......|+++.
T Consensus 214 ~~~~~~~~~~~y~~~~~~~~----~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~ 289 (320)
T PF05448_consen 214 RALELRADEGPYPEIRRYFR----WRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIP 289 (320)
T ss_dssp HHHHHT--STTTHHHHHHHH----HHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--
T ss_pred hhhhcCCccccHHHHHHHHh----ccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhccC
Confidence 3322111 111111000000 000011 122344556677888899999999999999999999999999999886
Q ss_pred hCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 787 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 787 ~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
. +.++.+||..+|... ......+.++||.+|
T Consensus 290 ~---~K~l~vyp~~~He~~----~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 290 G---PKELVVYPEYGHEYG----PEFQEDKQLNFLKEH 320 (320)
T ss_dssp S---SEEEEEETT--SSTT----HHHHHHHHHHHHHH-
T ss_pred C---CeeEEeccCcCCCch----hhHHHHHHHHHHhcC
Confidence 5 589999999999765 222367899999886
No 48
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.75 E-value=6.7e-17 Score=168.97 Aligned_cols=245 Identities=15% Similarity=0.155 Sum_probs=155.2
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
.+...+|..+....+.+. ..+..+||++||.... ...|...+..|..+||.|+++|.||+|.+.+ .....-.
T Consensus 13 ~~~~~d~~~~~~~~~~~~----~~~~g~Vvl~HG~~Eh--~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r--~~rg~~~ 84 (298)
T COG2267 13 YFTGADGTRLRYRTWAAP----EPPKGVVVLVHGLGEH--SGRYEELADDLAARGFDVYALDLRGHGRSPR--GQRGHVD 84 (298)
T ss_pred eeecCCCceEEEEeecCC----CCCCcEEEEecCchHH--HHHHHHHHHHHHhCCCEEEEecCCCCCCCCC--CCcCCch
Confidence 344556778887777765 2233899999997654 4567778999999999999999999655432 1111111
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh--hc-c---------C
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--MV-G---------T 714 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--~~-~---------~ 714 (826)
....-..|+...++.+... ....+++|+||||||.+++.++.+++..+.++|+.+|.+.+.. .. . .
T Consensus 85 ~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~~~~~~~ 162 (298)
T COG2267 85 SFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKLLG 162 (298)
T ss_pred hHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHHhccccc
Confidence 0111133444444444332 2246899999999999999999999999999999999887652 00 0 0
Q ss_pred CCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCc-----------------------ccccCCCCCcEEEEEeCCCC
Q 003363 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP-----------------------ISHISKVKTPTIFLLGAQDL 771 (826)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-----------------------~~~~~~i~~PvLii~G~~D~ 771 (826)
...+.+.+.. -.......-......+..+. ...+| .....++++|+||++|++|.
T Consensus 163 ~~~p~~~~~~-~~~~~~~~~~~sr~~~~~~~-~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll~g~~D~ 240 (298)
T COG2267 163 RIRPKLPVDS-NLLEGVLTDDLSRDPAEVAA-YEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLLQGGDDR 240 (298)
T ss_pred ccccccccCc-ccccCcCcchhhcCHHHHHH-HhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEEEEecCCCc
Confidence 0000110000 00000000000001111111 11122 12245678999999999999
Q ss_pred CCC-cHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCH--HHHHHHHHHHHHHHc
Q 003363 772 RVP-VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD--FESFLNIGLWFKKYC 825 (826)
Q Consensus 772 ~vp-~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~--~~~~~~i~~w~~~~l 825 (826)
+++ .+...++++++... .+++++|+|+.|.+..+... .++++.+.+|+.+++
T Consensus 241 vv~~~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 241 VVDNVEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred cccCcHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 998 67766666665442 37899999999998877777 899999999999876
No 49
>PRK11460 putative hydrolase; Provisional
Probab=99.74 E-value=1.8e-16 Score=160.60 Aligned_cols=186 Identities=13% Similarity=0.145 Sum_probs=134.6
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCC----CCchhhhhcCCCCCCcch-------HHHHHH
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSL----GFGEEALQSLPGKVGSQD-------VNDVLT 657 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~----g~G~~~~~~~~~~~~~~~-------~~D~~~ 657 (826)
....|+||++||.+.+ ...+...+..|+..++.+..+.++|.. +.|..|... ........ ...+.+
T Consensus 13 ~~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~-~~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 13 KPAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSV-QGITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccC-CCCCccchHHHHHHHHHHHHH
Confidence 4567999999996655 446777888888877666666666632 113333211 00011111 233445
Q ss_pred HHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCC
Q 003363 658 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTES 737 (826)
Q Consensus 658 ~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (826)
.++++.++..++.++|+|+|+|+||.+++.++.++|+.+.++++.++... . .
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~-----------~-----------------~ 141 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA-----------S-----------------L 141 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc-----------c-----------------c
Confidence 66666666668889999999999999999999888988888776655211 0 0
Q ss_pred CChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHH
Q 003363 738 PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 817 (826)
Q Consensus 738 ~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i 817 (826)
+. ....++|+|++||++|++||++.+.++++.|++.|.++++++||+++|.+. .+....+
T Consensus 142 ~~---------------~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~ 201 (232)
T PRK11460 142 PE---------------TAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFA 201 (232)
T ss_pred cc---------------cccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHH
Confidence 00 011368999999999999999999999999999999999999999999985 3667788
Q ss_pred HHHHHHHc
Q 003363 818 GLWFKKYC 825 (826)
Q Consensus 818 ~~w~~~~l 825 (826)
.+||.+.|
T Consensus 202 ~~~l~~~l 209 (232)
T PRK11460 202 LDRLRYTV 209 (232)
T ss_pred HHHHHHHc
Confidence 88888776
No 50
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.74 E-value=7.3e-17 Score=156.27 Aligned_cols=209 Identities=16% Similarity=0.208 Sum_probs=149.8
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHH-HCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
.+..|..+.+..+.|+ ....++|+|.||..... .........|. ..++.|+.+||+|.+.++.. +.+
T Consensus 41 ~t~rgn~~~~~y~~~~----~~~~~~lly~hGNa~Dl--gq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~-----psE- 108 (258)
T KOG1552|consen 41 KTSRGNEIVCMYVRPP----EAAHPTLLYSHGNAADL--GQMVELFKELSIFLNCNVVSYDYSGYGRSSGK-----PSE- 108 (258)
T ss_pred ecCCCCEEEEEEEcCc----cccceEEEEcCCcccch--HHHHHHHHHHhhcccceEEEEecccccccCCC-----ccc-
Confidence 3445667777888775 23569999999963322 12222222332 35899999999995544332 112
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC-CCCCCchhhhhc
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDWCYVESY 726 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-~~~~~~~~~~~~ 726 (826)
.+..+|+.++.+||.+... ..++|+|+|+|+|...+..+|++.| ..++|+.+|+.+....... .....|+
T Consensus 109 -~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~~~~~~~~----- 179 (258)
T KOG1552|consen 109 -RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPDTKTTYCF----- 179 (258)
T ss_pred -ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccCcceEEee-----
Confidence 2468999999999999876 7899999999999999999999988 9999999999886544322 1111110
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 806 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~ 806 (826)
..+.-+..+..+++|+|++||+.|++++..++.+++++.++. ++-.+..|+||....
T Consensus 180 --------------------d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~---~epl~v~g~gH~~~~ 236 (258)
T KOG1552|consen 180 --------------------DAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEK---VEPLWVKGAGHNDIE 236 (258)
T ss_pred --------------------ccccccCcceeccCCEEEEecccCceecccccHHHHHhcccc---CCCcEEecCCCcccc
Confidence 011115667788999999999999999999999999999874 788888999997543
Q ss_pred CCCHHHHHHHHHHHHHH
Q 003363 807 PQSDFESFLNIGLWFKK 823 (826)
Q Consensus 807 ~~~~~~~~~~i~~w~~~ 823 (826)
-. .++.+.+..|+..
T Consensus 237 ~~--~~yi~~l~~f~~~ 251 (258)
T KOG1552|consen 237 LY--PEYIEHLRRFISS 251 (258)
T ss_pred cC--HHHHHHHHHHHHH
Confidence 22 2566667766654
No 51
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.73 E-value=5.2e-16 Score=181.16 Aligned_cols=208 Identities=16% Similarity=0.212 Sum_probs=148.9
Q ss_pred HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC--CCC------------CCcEEEEEe
Q 003363 613 SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG--LAN------------PSKVTVVGG 678 (826)
Q Consensus 613 ~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--~~d------------~~rv~l~G~ 678 (826)
..++|+.+||+|+++|.||.++++..+ ...+..+.+|..++|+|+..+. +.| ..+|+++|.
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~-----~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~ 345 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCP-----TTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGK 345 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcC-----ccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEE
Confidence 557899999999999999987765543 2344668999999999998542 123 479999999
Q ss_pred cchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCC---C-Cch------hhhhccCc----C-----Ccc------
Q 003363 679 SHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI---P-DWC------YVESYGSK----G-----KDS------ 733 (826)
Q Consensus 679 S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~---~-~~~------~~~~~~~~----~-----~~~------ 733 (826)
||||++++.+|+..|+.++++|..+++.++..++..... + .|. ........ . ...
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 999999999999889999999999999877543311100 0 110 00000000 0 000
Q ss_pred -CCC---CCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCC
Q 003363 734 -FTE---SPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 809 (826)
Q Consensus 734 -~~~---~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~ 809 (826)
+.. .......+.|...+++.+++++++|+|++||..|.+|++.++.+++++|++++++.++++.++ +|.......
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~~ 504 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNWQ 504 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCchh
Confidence 000 000011223455677788899999999999999999999999999999999999999877755 686655555
Q ss_pred HHHHHHHHHHHHHHHcC
Q 003363 810 DFESFLNIGLWFKKYCK 826 (826)
Q Consensus 810 ~~~~~~~i~~w~~~~l~ 826 (826)
..++.+.+.+||+++|+
T Consensus 505 ~~d~~e~~~~Wfd~~Lk 521 (767)
T PRK05371 505 SIDFRDTMNAWFTHKLL 521 (767)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 66788999999999985
No 52
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.72 E-value=1.5e-16 Score=159.56 Aligned_cols=191 Identities=18% Similarity=0.144 Sum_probs=124.9
Q ss_pred EEEecCCCCCCCCCcEEEEEcCCCCCCCCccch---HHHHHHHHCCcEEEEECCCCCCCCchhh--hhcCCCCCCcchHH
Q 003363 579 IFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSLGFGEEA--LQSLPGKVGSQDVN 653 (826)
Q Consensus 579 ~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vl~~d~rG~~g~G~~~--~~~~~~~~~~~~~~ 653 (826)
++|.|++. .+++|+||++||++.... .+. .....+.+.||.|++||++|.++.+..+ ........+..+..
T Consensus 2 ~ly~P~~~--~~~~P~vv~lHG~~~~~~--~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~ 77 (212)
T TIGR01840 2 YVYVPAGL--TGPRALVLALHGCGQTAS--AYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVE 77 (212)
T ss_pred EEEcCCCC--CCCCCEEEEeCCCCCCHH--HHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHH
Confidence 68889863 467899999999775532 222 2344556789999999999965433221 11111122334678
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCcc
Q 003363 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 733 (826)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (826)
|+...++++.++..+|++||+|+|+|+||++++.++.++|++|++++..++..-.... . . ......
T Consensus 78 ~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~----~---~--~~~~~~----- 143 (212)
T TIGR01840 78 SLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEAS----S---S--ISATPQ----- 143 (212)
T ss_pred HHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccc----c---c--hhhHhh-----
Confidence 8999999999887799999999999999999999999999999999888765311000 0 0 000000
Q ss_pred CCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhC
Q 003363 734 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 788 (826)
Q Consensus 734 ~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~ 788 (826)
+...........+.... .....+..+|++|+||++|.+||++.+++++++|++.
T Consensus 144 ~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 144 MCTAATAASVCRLVRGM-QSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred cCCCCCHHHHHHHHhcc-CCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 00001111111111110 1112234456889999999999999999999999875
No 53
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.72 E-value=4.5e-16 Score=165.79 Aligned_cols=221 Identities=14% Similarity=0.151 Sum_probs=133.7
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|.||++||.+.. ...|...+..|++.||.|+++|+|| +|.+.. +........++..+.+..++++ ++.
T Consensus 45 ~~~~lvliHG~~~~--~~~w~~~~~~L~~~gy~vi~~Dl~G---~G~S~~---~~~~~~~~~~~~a~~l~~~l~~--l~~ 114 (302)
T PRK00870 45 DGPPVLLLHGEPSW--SYLYRKMIPILAAAGHRVIAPDLIG---FGRSDK---PTRREDYTYARHVEWMRSWFEQ--LDL 114 (302)
T ss_pred CCCEEEEECCCCCc--hhhHHHHHHHHHhCCCEEEEECCCC---CCCCCC---CCCcccCCHHHHHHHHHHHHHH--cCC
Confidence 35789999997644 5578888888988899999999999 444321 1111123455555555555554 345
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh------h---ccC-CCCCCchhhh----hccC----cCCc
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------M---VGT-TDIPDWCYVE----SYGS----KGKD 732 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~------~---~~~-~~~~~~~~~~----~~~~----~~~~ 732 (826)
+++.|+|||+||.++..++.++|++++++|+.++...... + ... ...+...... .... ....
T Consensus 115 ~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (302)
T PRK00870 115 TDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRA 194 (302)
T ss_pred CCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHH
Confidence 7899999999999999999999999999998886321100 0 000 0000000000 0000 0000
Q ss_pred cCCCCCChh---h-HHHH---hhcC-----------cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 733 SFTESPSVE---D-LTRF---HSKS-----------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 733 ~~~~~~~~~---~-~~~~---~~~s-----------p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
.+......+ . ...+ .... -...+.++++|+|+++|++|..+|... +.+.+.+.+. ..+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~-~~~~~ 272 (302)
T PRK00870 195 AYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPGA-AGQPH 272 (302)
T ss_pred HhhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhcccc-cccce
Confidence 000000000 0 0000 0000 012356789999999999999999866 6676666542 11347
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 795 IVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 795 ~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
++++++||....... ..+...+.+|++++
T Consensus 273 ~~i~~~gH~~~~e~p-~~~~~~l~~fl~~~ 301 (302)
T PRK00870 273 PTIKGAGHFLQEDSG-EELAEAVLEFIRAT 301 (302)
T ss_pred eeecCCCccchhhCh-HHHHHHHHHHHhcC
Confidence 789999999765444 58889999999875
No 54
>PRK10985 putative hydrolase; Provisional
Probab=99.71 E-value=5.7e-16 Score=166.09 Aligned_cols=225 Identities=14% Similarity=0.115 Sum_probs=139.6
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
....|+||++||.++..........+..|.++||.|+++|+||+++..... +..+.....+|+..+++++.++.
T Consensus 55 ~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~----~~~~~~~~~~D~~~~i~~l~~~~-- 128 (324)
T PRK10985 55 ARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRL----HRIYHSGETEDARFFLRWLQREF-- 128 (324)
T ss_pred CCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCC----cceECCCchHHHHHHHHHHHHhC--
Confidence 345799999999765532222345778899999999999999965432111 11112234789999999998863
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCc--eeEEEecCCccchhhhccCCC-----CCCchhhh-----------hccC--
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALMVGTTD-----IPDWCYVE-----------SYGS-- 728 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~p~~~~~~~~~~~~-----~~~~~~~~-----------~~~~-- 728 (826)
...++.++|||+||.+++.+++++++. +.++|++++..++.......+ .....+.. .+..
T Consensus 129 ~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 208 (324)
T PRK10985 129 GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTL 208 (324)
T ss_pred CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 346899999999999988888776543 778887777655321100000 00000000 0000
Q ss_pred ------------------cCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCC
Q 003363 729 ------------------KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 790 (826)
Q Consensus 729 ------------------~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~ 790 (826)
.....+.+. ....+.+...+....+.++++|+|+++|++|+.++++....+.+. ..
T Consensus 209 ~~~~~~~~~~~~~~~fd~~~~~~~~g~--~~~~~~y~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~----~~ 282 (324)
T PRK10985 209 PINLAQLKSVRRLREFDDLITARIHGF--ADAIDYYRQCSALPLLNQIRKPTLIIHAKDDPFMTHEVIPKPESL----PP 282 (324)
T ss_pred cCCHHHHhcCCcHHHHhhhheeccCCC--CCHHHHHHHCChHHHHhCCCCCEEEEecCCCCCCChhhChHHHHh----CC
Confidence 000000010 112233445566667889999999999999999988766554332 23
Q ss_pred CEEEEEeCCCCCCCCCC----CCHHHHHHHHHHHHHHHc
Q 003363 791 ETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 791 ~~~~~~~p~~~H~~~~~----~~~~~~~~~i~~w~~~~l 825 (826)
.+++++++++||..... ....-..+.+.+||+..+
T Consensus 283 ~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 283 NVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred CeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 58889999999974422 222345567888997764
No 55
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.70 E-value=1.1e-16 Score=147.97 Aligned_cols=225 Identities=20% Similarity=0.288 Sum_probs=160.3
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
+....|..++++|+..- ....|+++++|+..+..+. ......-++.+.+..|++++||| ||.+.. .+.+
T Consensus 58 ~l~T~D~vtL~a~~~~~-----E~S~pTlLyfh~NAGNmGh-r~~i~~~fy~~l~mnv~ivsYRG---YG~S~G--spsE 126 (300)
T KOG4391|consen 58 ELRTRDKVTLDAYLMLS-----ESSRPTLLYFHANAGNMGH-RLPIARVFYVNLKMNVLIVSYRG---YGKSEG--SPSE 126 (300)
T ss_pred EEEcCcceeEeeeeecc-----cCCCceEEEEccCCCcccc-hhhHHHHHHHHcCceEEEEEeec---cccCCC--Cccc
Confidence 55667889999999983 3488999999997665432 12223335678899999999999 555421 1222
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhc
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 726 (826)
-| -.-|..++++|+..++..|..++.++|.|.||..+..+|++..+++.|+++.+.+..+..+.-..-.+ +
T Consensus 127 ~G--L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p-------~ 197 (300)
T KOG4391|consen 127 EG--LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFP-------F 197 (300)
T ss_pred cc--eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheecc-------c
Confidence 22 25689999999999999999999999999999999999999999999999998887764432211111 0
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 806 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~ 806 (826)
+. + ..+.+-.... ......+.+.+.|+|++.|..|+.||+.+.+++|+....+ ..++..||++.|.-.-
T Consensus 198 ~~---k---~i~~lc~kn~---~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl~eFP~gtHNDT~ 266 (300)
T KOG4391|consen 198 PM---K---YIPLLCYKNK---WLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRLAEFPDGTHNDTW 266 (300)
T ss_pred hh---h---HHHHHHHHhh---hcchhhhccccCceEEeecCccccCCcHHHHHHHHhCchh--hhhheeCCCCccCceE
Confidence 00 0 0000000011 2223345567799999999999999999999999987654 4678899999997543
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 003363 807 PQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 807 ~~~~~~~~~~i~~w~~~~ 824 (826)
... ..++.|.+|+.+.
T Consensus 267 i~d--GYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 267 ICD--GYFQAIEDFLAEV 282 (300)
T ss_pred Eec--cHHHHHHHHHHHh
Confidence 222 4678899998774
No 56
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.70 E-value=4.9e-16 Score=164.03 Aligned_cols=215 Identities=17% Similarity=0.215 Sum_probs=128.3
Q ss_pred CcEEEEEcCCCCCCCCccch---HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
.|.||++||.+... ..|. ..+..+++.||.|+++|+||. |.+..............+|+.++++. +
T Consensus 30 ~~~ivllHG~~~~~--~~~~~~~~~~~~l~~~~~~vi~~D~~G~---G~S~~~~~~~~~~~~~~~~l~~~l~~------l 98 (282)
T TIGR03343 30 GEAVIMLHGGGPGA--GGWSNYYRNIGPFVDAGYRVILKDSPGF---NKSDAVVMDEQRGLVNARAVKGLMDA------L 98 (282)
T ss_pred CCeEEEECCCCCch--hhHHHHHHHHHHHHhCCCEEEEECCCCC---CCCCCCcCcccccchhHHHHHHHHHH------c
Confidence 46799999965442 2333 345567788999999999994 44421110011111123444444443 3
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCC------------CCCchhhhhccCcC-CccCC
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYVESYGSKG-KDSFT 735 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~~~ 735 (826)
+.+++.++|||+||.+++.++.++|++++++|+.+|............ .+.......+.... .....
T Consensus 99 ~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T TIGR03343 99 DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSL 178 (282)
T ss_pred CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCccc
Confidence 567999999999999999999999999999999887421100000000 00000000000000 00000
Q ss_pred C------------CCChhhHHHHhh---------cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 736 E------------SPSVEDLTRFHS---------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 736 ~------------~~~~~~~~~~~~---------~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
. .........+.. .+....+.++++|+|+++|++|..++++.+.++++.+++ +++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~----~~~ 254 (282)
T TIGR03343 179 ITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMPD----AQL 254 (282)
T ss_pred CcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCCC----CEE
Confidence 0 000000011110 011234678899999999999999999998888887754 789
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 795 IVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 795 ~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
++++++||....... ..+.+.+.+|++
T Consensus 255 ~~i~~agH~~~~e~p-~~~~~~i~~fl~ 281 (282)
T TIGR03343 255 HVFSRCGHWAQWEHA-DAFNRLVIDFLR 281 (282)
T ss_pred EEeCCCCcCCcccCH-HHHHHHHHHHhh
Confidence 999999998765444 478888999985
No 57
>PLN02511 hydrolase
Probab=99.70 E-value=5.9e-16 Score=169.38 Aligned_cols=243 Identities=15% Similarity=0.131 Sum_probs=145.1
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
..||..+..-.+.+.........|+||++||..++.. ..| ...+..+.++||.|+++|+||+++.... .+..+.
T Consensus 78 ~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~-~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~----~~~~~~ 152 (388)
T PLN02511 78 TPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSD-DSYVRHMLLRARSKGWRVVVFNSRGCADSPVT----TPQFYS 152 (388)
T ss_pred CCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCC-CHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC----CcCEEc
Confidence 3455556543333221112345689999999765532 234 3455667789999999999996543211 111122
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCc--eeEEEecCCccchhhh----ccCC-CCCCch
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALM----VGTT-DIPDWC 721 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~p~~~~~~~----~~~~-~~~~~~ 721 (826)
....+|+.++++++..+. ...++.++|||+||.+++.++.++++. +.+++++++..++... .... ......
T Consensus 153 ~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~~~~~y~~~ 230 (388)
T PLN02511 153 ASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKGFNNVYDKA 230 (388)
T ss_pred CCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhccHHHHHHHH
Confidence 344789999999998763 346899999999999999999999986 7777766665443110 0000 000000
Q ss_pred hh-------h----hcc------------C-cC--------CccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCC
Q 003363 722 YV-------E----SYG------------S-KG--------KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 769 (826)
Q Consensus 722 ~~-------~----~~~------------~-~~--------~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~ 769 (826)
+. . .+. . .. .....+.. ...+.|...++...+.+|++|+|+|+|++
T Consensus 231 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~--~~~~yy~~~s~~~~L~~I~vPtLiI~g~d 308 (388)
T PLN02511 231 LAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFK--SVDAYYSNSSSSDSIKHVRVPLLCIQAAN 308 (388)
T ss_pred HHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCC--CHHHHHHHcCchhhhccCCCCeEEEEcCC
Confidence 00 0 000 0 00 00000111 11122345667778899999999999999
Q ss_pred CCCCCcHHHH-HHHHHHHhCCCCEEEEEeCCCCCCCCCCCCH-----HHHHHHHHHHHHHHc
Q 003363 770 DLRVPVSNGL-QYARALREKGVETKVIVFPNDVHGIERPQSD-----FESFLNIGLWFKKYC 825 (826)
Q Consensus 770 D~~vp~~~~~-~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~-----~~~~~~i~~w~~~~l 825 (826)
|+++|..... .+.+ ....+++++++++||....+... ....+.+.+||+...
T Consensus 309 Dpi~p~~~~~~~~~~----~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~ 366 (388)
T PLN02511 309 DPIAPARGIPREDIK----ANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALE 366 (388)
T ss_pred CCcCCcccCcHhHHh----cCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999876542 2222 23458999999999975543321 124677888887653
No 58
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=2.9e-16 Score=150.94 Aligned_cols=241 Identities=16% Similarity=0.216 Sum_probs=160.3
Q ss_pred eeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchh----hh
Q 003363 565 SANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE----AL 640 (826)
Q Consensus 565 ~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~----~~ 640 (826)
..+++.-+|..++||++.|+. ..++.|+||..||..+..+ .+ ...-.++..||+|+.+|.||.+++..+ ..
T Consensus 58 dvTf~g~~g~rI~gwlvlP~~--~~~~~P~vV~fhGY~g~~g--~~-~~~l~wa~~Gyavf~MdvRGQg~~~~dt~~~p~ 132 (321)
T COG3458 58 DVTFTGYGGARIKGWLVLPRH--EKGKLPAVVQFHGYGGRGG--EW-HDMLHWAVAGYAVFVMDVRGQGSSSQDTADPPG 132 (321)
T ss_pred EEEEeccCCceEEEEEEeecc--cCCccceEEEEeeccCCCC--Cc-cccccccccceeEEEEecccCCCccccCCCCCC
Confidence 347888889999999999984 4489999999999554432 11 223456789999999999997766321 11
Q ss_pred h-cCCCC------------CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccc
Q 003363 641 Q-SLPGK------------VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (826)
Q Consensus 641 ~-~~~~~------------~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~ 707 (826)
. ..++. +......|+..+++-+.....+|.+||++.|.|.||.+++.+++.. .+++++++..|...
T Consensus 133 ~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~-~rik~~~~~~Pfl~ 211 (321)
T COG3458 133 GPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALD-PRIKAVVADYPFLS 211 (321)
T ss_pred CCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcC-hhhhcccccccccc
Confidence 1 11111 1112367899999999999899999999999999999999888865 58999999999653
Q ss_pred -hhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHH
Q 003363 708 -LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 786 (826)
Q Consensus 708 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~ 786 (826)
............+.....|- ++ ...+..+..+.+...+....+..++.|+|+..|-.|++||+.....+|+++.
T Consensus 212 df~r~i~~~~~~~ydei~~y~----k~-h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~ 286 (321)
T COG3458 212 DFPRAIELATEGPYDEIQTYF----KR-HDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALT 286 (321)
T ss_pred cchhheeecccCcHHHHHHHH----Hh-cCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhhccc
Confidence 21111111000000000000 00 0111122233444455566778899999999999999999999999999987
Q ss_pred hCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 787 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 787 ~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
. +.++.+||.-+|.-... -..+.++.|+..
T Consensus 287 ~---~K~i~iy~~~aHe~~p~----~~~~~~~~~l~~ 316 (321)
T COG3458 287 T---SKTIEIYPYFAHEGGPG----FQSRQQVHFLKI 316 (321)
T ss_pred C---CceEEEeeccccccCcc----hhHHHHHHHHHh
Confidence 5 36777888888964421 112345666643
No 59
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.69 E-value=3.8e-16 Score=166.81 Aligned_cols=232 Identities=21% Similarity=0.286 Sum_probs=157.0
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch--HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~--~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
..+...+|.| ........|+||++|||++........ .....++..|+.|+.+|||..+++ .....
T Consensus 62 ~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~-----------~~p~~ 129 (312)
T COG0657 62 DGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH-----------PFPAA 129 (312)
T ss_pred CceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------CCCch
Confidence 3366788888 223556789999999999876554333 345566789999999999997653 33446
Q ss_pred HHHHHHHHHHHHHcC---CCCCCcEEEEEecchHHHHHHHHHhCCC----ceeEEEecCCccchhhhccCCCCCCchhhh
Q 003363 652 VNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 724 (826)
++|+.++++|+.++. .+|+++|+++|+|.||.+++.++....+ ..++.++++|..+... . ......+....
T Consensus 130 ~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~-~~~~~~~~~~~ 207 (312)
T COG0657 130 LEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-S-AASLPGYGEAD 207 (312)
T ss_pred HHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-c-ccchhhcCCcc
Confidence 899999999999873 4899999999999999999998875443 5788999999988664 1 11110000000
Q ss_pred hccCc-----CCccCCCCCChhhHHHHhhcCcccc--cCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEe
Q 003363 725 SYGSK-----GKDSFTESPSVEDLTRFHSKSPISH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 797 (826)
Q Consensus 725 ~~~~~-----~~~~~~~~~~~~~~~~~~~~sp~~~--~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 797 (826)
.+... ....+.... .+. .....+|+.. +.. -+|+++++|+.|...+ +++.+.++|+++|+++++..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~--~~~-~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~~ 281 (312)
T COG0657 208 LLDAAAILAWFADLYLGAA--PDR-EDPEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRVY 281 (312)
T ss_pred ccCHHHHHHHHHHHhCcCc--ccc-CCCccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEEe
Confidence 00000 000000000 000 0012334332 233 4789999999999985 999999999999999999999
Q ss_pred CCCCCCCCCCC--CHHHHHHHHHHHHHHHc
Q 003363 798 PNDVHGIERPQ--SDFESFLNIGLWFKKYC 825 (826)
Q Consensus 798 p~~~H~~~~~~--~~~~~~~~i~~w~~~~l 825 (826)
++..|.+.... ...+.+..+..|+++.+
T Consensus 282 ~g~~H~f~~~~~~~a~~~~~~~~~~l~~~~ 311 (312)
T COG0657 282 PGMIHGFDLLTGPEARSALRQIAAFLRAAL 311 (312)
T ss_pred CCcceeccccCcHHHHHHHHHHHHHHHHhc
Confidence 99999884322 23455677888887544
No 60
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.69 E-value=5.7e-16 Score=164.42 Aligned_cols=221 Identities=17% Similarity=0.140 Sum_probs=133.9
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|.||++||.+.+ ...|...+..|+.. |.|+++|+||.|.+......... ......++++...+..+++.- ..++
T Consensus 30 ~~vlllHG~~~~--~~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~-~~~~~~~~~~a~~l~~~l~~l--~~~~ 103 (294)
T PLN02824 30 PALVLVHGFGGN--ADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAP-PNSFYTFETWGEQLNDFCSDV--VGDP 103 (294)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCcccccc-ccccCCHHHHHHHHHHHHHHh--cCCC
Confidence 789999997665 45788888888876 69999999995443211000000 011234666666666555542 3478
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCC----------------CCCchhhh------------
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD----------------IPDWCYVE------------ 724 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~----------------~~~~~~~~------------ 724 (826)
+.|+|||+||.+++.++.++|++++++|+++|............ .....+..
T Consensus 104 ~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (294)
T PLN02824 104 AFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKNIL 183 (294)
T ss_pred eEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHHHH
Confidence 99999999999999999999999999999987431100000000 00000000
Q ss_pred --hccCc-C-----CccCC---CCCC-hhhHHHHhhcC----cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhC
Q 003363 725 --SYGSK-G-----KDSFT---ESPS-VEDLTRFHSKS----PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 788 (826)
Q Consensus 725 --~~~~~-~-----~~~~~---~~~~-~~~~~~~~~~s----p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~ 788 (826)
.+... . ...+. ..+. ......+.... ....+.++++|+|+++|++|..+|.+.++.+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~--- 260 (294)
T PLN02824 184 CQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYANFD--- 260 (294)
T ss_pred HHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHhcC---
Confidence 00000 0 00000 0000 00000111111 12346788999999999999999998876654433
Q ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 789 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 789 g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
...++++++++||....+. ..++...+.+|++++
T Consensus 261 -~~~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 261 -AVEDFIVLPGVGHCPQDEA-PELVNPLIESFVARH 294 (294)
T ss_pred -CccceEEeCCCCCChhhhC-HHHHHHHHHHHHhcC
Confidence 2368899999999876544 447889999999864
No 61
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.68 E-value=2.5e-15 Score=161.09 Aligned_cols=244 Identities=14% Similarity=0.155 Sum_probs=145.4
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc--------------------c---c-hHHHHHHHHCCcEE
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--------------------S---Y-SKSLAFLSSVGYSL 624 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--------------------~---~-~~~~~~la~~G~~V 624 (826)
.+.+|..+....+.|+ .+..+|+++||........ . | ...+..|+++||.|
T Consensus 3 ~~~~g~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V 77 (332)
T TIGR01607 3 RNKDGLLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSV 77 (332)
T ss_pred cCCCCCeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcE
Confidence 3456778888888774 3567999999944332111 1 1 35688999999999
Q ss_pred EEECCCCCCCCchhhhhcCCCCCC--cchHHHHHHHHHHHHHc------------------CCCCCCcEEEEEecchHHH
Q 003363 625 LIVNYRGSLGFGEEALQSLPGKVG--SQDVNDVLTAIDHVIDM------------------GLANPSKVTVVGGSHGGFL 684 (826)
Q Consensus 625 l~~d~rG~~g~G~~~~~~~~~~~~--~~~~~D~~~~i~~l~~~------------------~~~d~~rv~l~G~S~GG~~ 684 (826)
+++|.||.|...... ...+... ..-++|+...++.+.+. .+-+..++.|+||||||.+
T Consensus 78 ~~~D~rGHG~S~~~~--~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i 155 (332)
T TIGR01607 78 YGLDLQGHGESDGLQ--NLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNI 155 (332)
T ss_pred EEecccccCCCcccc--ccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHH
Confidence 999999965432110 0011111 11246677777766542 0111357999999999999
Q ss_pred HHHHHHhCCC--------ceeEEEecCCccchhhhc----------------------cCCCCC--Cch-----hhhhcc
Q 003363 685 TTHLIGQAPD--------KFVAAAARNPLCNLALMV----------------------GTTDIP--DWC-----YVESYG 727 (826)
Q Consensus 685 a~~~a~~~p~--------~~~a~v~~~p~~~~~~~~----------------------~~~~~~--~~~-----~~~~~~ 727 (826)
++.++..+++ .++++|+.+|...+.... ...... .+. ..+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 235 (332)
T TIGR01607 156 ALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVNDIIK 235 (332)
T ss_pred HHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhhHHh
Confidence 9988865432 588888888875431100 000000 000 000000
Q ss_pred CcCCccCCCCCChhhHHHHhhcC--cccccCCC--CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 728 SKGKDSFTESPSVEDLTRFHSKS--PISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~s--p~~~~~~i--~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
.+.. .+...........+.... ....+.++ ++|+|++||++|..++++.+..+++++.. ..+++.+|++++|.
T Consensus 236 ~Dp~-~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--~~~~l~~~~g~~H~ 312 (332)
T TIGR01607 236 FDKF-RYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSI--SNKELHTLEDMDHV 312 (332)
T ss_pred cCcc-ccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccC--CCcEEEEECCCCCC
Confidence 0000 000111111111111110 01234445 68999999999999999999888877643 24678899999999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 003363 804 IERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 804 ~~~~~~~~~~~~~i~~w~~ 822 (826)
+..+....+++..+.+||+
T Consensus 313 i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 313 ITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CccCCCHHHHHHHHHHHhh
Confidence 9877767789999999986
No 62
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.68 E-value=9.9e-16 Score=158.91 Aligned_cols=216 Identities=16% Similarity=0.254 Sum_probs=133.7
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
.+.|+||++||.+.. ...|...+..|. +||.|+++|+||.|...... . .....++....+..+++. ++
T Consensus 11 ~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~----~---~~~~~~~~~~~~~~~i~~--~~ 78 (257)
T TIGR03611 11 ADAPVVVLSSGLGGS--GSYWAPQLDVLT-QRFHVVTYDHRGTGRSPGEL----P---PGYSIAHMADDVLQLLDA--LN 78 (257)
T ss_pred CCCCEEEEEcCCCcc--hhHHHHHHHHHH-hccEEEEEcCCCCCCCCCCC----c---ccCCHHHHHHHHHHHHHH--hC
Confidence 356889999997654 345666666665 57999999999955432211 1 112345555444444444 34
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc-----------cCCCCCCc-------hhhhhccCcC-
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-----------GTTDIPDW-------CYVESYGSKG- 730 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~- 730 (826)
..++.++|||+||.+++.++.++|+.++++|+.++........ .......+ .+...+....
T Consensus 79 ~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T TIGR03611 79 IERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENA 158 (257)
T ss_pred CCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccc
Confidence 5789999999999999999999999999999888754321000 00000000 0000000000
Q ss_pred -------CccCCCCCChh----hHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 731 -------KDSFTESPSVE----DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 731 -------~~~~~~~~~~~----~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
..........+ ....+...+....+.++++|+|+++|++|..+|++++.++++.+.+ .+++.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~ 234 (257)
T TIGR03611 159 ARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPN----AQLKLLPY 234 (257)
T ss_pred hhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcCC----ceEEEECC
Confidence 00000000000 0111122233455778899999999999999999999888887654 67889999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH
Q 003363 800 DVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 800 ~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+||.+... ...++.+.+.+||+
T Consensus 235 ~gH~~~~~-~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 235 GGHASNVT-DPETFNRALLDFLK 256 (257)
T ss_pred CCCCcccc-CHHHHHHHHHHHhc
Confidence 99987654 44578888888885
No 63
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.68 E-value=4.6e-15 Score=149.30 Aligned_cols=224 Identities=18% Similarity=0.254 Sum_probs=141.4
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
..+..|+|+++||-|.. +..|+.+...|+.+||.|+++|+|| ||.+.. |.......+..+...+..+++.-
T Consensus 40 g~~~gP~illlHGfPe~--wyswr~q~~~la~~~~rviA~DlrG---yG~Sd~---P~~~~~Yt~~~l~~di~~lld~L- 110 (322)
T KOG4178|consen 40 GPGDGPIVLLLHGFPES--WYSWRHQIPGLASRGYRVIAPDLRG---YGFSDA---PPHISEYTIDELVGDIVALLDHL- 110 (322)
T ss_pred cCCCCCEEEEEccCCcc--chhhhhhhhhhhhcceEEEecCCCC---CCCCCC---CCCcceeeHHHHHHHHHHHHHHh-
Confidence 45677999999998866 6678889999999999999999999 665532 33434445555555555555442
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh-----ccCCCCCCch---hhhhccCc----------
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-----VGTTDIPDWC---YVESYGSK---------- 729 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-----~~~~~~~~~~---~~~~~~~~---------- 729 (826)
.-+|+.++||++|+.++..++..+|+++++.|+.+.......+ .......+|. +.+....+
T Consensus 111 -g~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~~~ 189 (322)
T KOG4178|consen 111 -GLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDTEM 189 (322)
T ss_pred -ccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchhHH
Confidence 2589999999999999999999999999999988754431000 0000000000 00000000
Q ss_pred --------CCc--cCCC-----CCC---hhhH-------------------HHHhhcCc--ccccCCCCCcEEEEEeCCC
Q 003363 730 --------GKD--SFTE-----SPS---VEDL-------------------TRFHSKSP--ISHISKVKTPTIFLLGAQD 770 (826)
Q Consensus 730 --------~~~--~~~~-----~~~---~~~~-------------------~~~~~~sp--~~~~~~i~~PvLii~G~~D 770 (826)
... .+.. .+. +++. +++....+ .....++++|++++.|+.|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~~D 269 (322)
T KOG4178|consen 190 LVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGDLD 269 (322)
T ss_pred hHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEecCc
Confidence 000 0000 000 1111 12222221 2335678899999999999
Q ss_pred CCCCcHHHHHHHHH-HHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 771 LRVPVSNGLQYARA-LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 771 ~~vp~~~~~~~~~~-l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
...++..-.+.+++ +... .+.++++++||....++.. ++.+.++.||++..
T Consensus 270 ~v~~~p~~~~~~rk~vp~l---~~~vv~~~~gH~vqqe~p~-~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 270 PVLPYPIFGELYRKDVPRL---TERVVIEGIGHFVQQEKPQ-EVNQAILGFINSFS 321 (322)
T ss_pred ccccchhHHHHHHHhhccc---cceEEecCCcccccccCHH-HHHHHHHHHHHhhc
Confidence 99887633333333 3332 3678899999988766655 89999999999864
No 64
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.67 E-value=3.5e-15 Score=156.81 Aligned_cols=229 Identities=13% Similarity=0.134 Sum_probs=138.4
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
+|.+++.+... .+...|.||++||.+.. ...|...+..|.+ +|.|+++|+||. |.+... .....
T Consensus 10 ~~~~~~~~~~~-----~~~~~~plvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~---G~S~~~-----~~~~~ 73 (276)
T TIGR02240 10 DGQSIRTAVRP-----GKEGLTPLLIFNGIGAN--LELVFPFIEALDP-DLEVIAFDVPGV---GGSSTP-----RHPYR 73 (276)
T ss_pred CCcEEEEEEec-----CCCCCCcEEEEeCCCcc--hHHHHHHHHHhcc-CceEEEECCCCC---CCCCCC-----CCcCc
Confidence 45566654432 11223579999996544 4467777777754 699999999994 444211 11223
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc-------CCCCCC---c-
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTDIPD---W- 720 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-------~~~~~~---~- 720 (826)
.+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.++......... ...... .
T Consensus 74 ~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (276)
T TIGR02240 74 FPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQPS 151 (276)
T ss_pred HHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhccc
Confidence 45555555555554 3457899999999999999999999999999999987653210000 000000 0
Q ss_pred ---hh-hhhccCcC------Ccc----CCCCCChh-hHHHH--hhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHH
Q 003363 721 ---CY-VESYGSKG------KDS----FTESPSVE-DLTRF--HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 783 (826)
Q Consensus 721 ---~~-~~~~~~~~------~~~----~~~~~~~~-~~~~~--~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~ 783 (826)
.. ...+.... ... ........ ..... ........+.++++|+|+++|++|..+|+..+.++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~ 231 (276)
T TIGR02240 152 HGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMRLLAW 231 (276)
T ss_pred cccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHHHHHH
Confidence 00 00000000 000 00000000 00000 0111224467899999999999999999999988887
Q ss_pred HHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 784 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 784 ~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
.+.. .+++++++ ||..... ...++...+.+|+++.
T Consensus 232 ~~~~----~~~~~i~~-gH~~~~e-~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 232 RIPN----AELHIIDD-GHLFLIT-RAEAVAPIIMKFLAEE 266 (276)
T ss_pred hCCC----CEEEEEcC-CCchhhc-cHHHHHHHHHHHHHHh
Confidence 7754 57778875 9986654 4458889999999864
No 65
>PLN02965 Probable pheophorbidase
Probab=99.67 E-value=3.8e-15 Score=154.48 Aligned_cols=214 Identities=16% Similarity=0.138 Sum_probs=131.0
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC-Cc
Q 003363 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP-SK 672 (826)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~-~r 672 (826)
.||++||.+.. ...|...+..|++.||.|+++|+||.|. +... . . ....++++.+.+..+++. ++. ++
T Consensus 5 ~vvllHG~~~~--~~~w~~~~~~L~~~~~~via~Dl~G~G~---S~~~--~-~-~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHG--AWCWYKLATLLDAAGFKSTCVDLTGAGI---SLTD--S-N-TVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCC--cCcHHHHHHHHhhCCceEEEecCCcCCC---CCCC--c-c-ccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 49999997755 4568888889989999999999999543 3211 0 1 122355555545545444 233 58
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCcc---ch---hhhc--cCCCCCCchhh--hhccCc---------CC-c
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC---NL---ALMV--GTTDIPDWCYV--ESYGSK---------GK-D 732 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~---~~---~~~~--~~~~~~~~~~~--~~~~~~---------~~-~ 732 (826)
+.++||||||.+++.++.++|++++++|+.++.. .. .... .......|... ...... .. .
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRH 153 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHH
Confidence 9999999999999999999999999999887642 10 0000 00000000000 000000 00 0
Q ss_pred cCCCCCChhhHHHH-hh--cCc----------ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 733 SFTESPSVEDLTRF-HS--KSP----------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 733 ~~~~~~~~~~~~~~-~~--~sp----------~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
.+......+..... .. ..+ ...+.++++|+|+++|++|..+|+..++.+.+.+.. .+++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~----a~~~~i~~ 229 (255)
T PLN02965 154 YYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPP----AQTYVLED 229 (255)
T ss_pred HHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCc----ceEEEecC
Confidence 00000000100000 00 000 012346899999999999999999988888877765 68899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 800 DVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 800 ~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+||....++. .++...+.+|++.
T Consensus 230 ~GH~~~~e~p-~~v~~~l~~~~~~ 252 (255)
T PLN02965 230 SDHSAFFSVP-TTLFQYLLQAVSS 252 (255)
T ss_pred CCCchhhcCH-HHHHHHHHHHHHH
Confidence 9998876544 4777788877654
No 66
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.66 E-value=3.3e-15 Score=155.61 Aligned_cols=232 Identities=19% Similarity=0.255 Sum_probs=158.5
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC---ccchHHHHHH-HHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---SSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~---~~~~~~~~~l-a~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
..+..++|.|.......+.|+|||+|||++.... ..|......+ .+.+..|+.+|||-.+++ ..+
T Consensus 72 ~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh-----------~~P 140 (336)
T KOG1515|consen 72 TNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEH-----------PFP 140 (336)
T ss_pred CCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCC-----------CCC
Confidence 3477789999865444789999999999987653 3555566665 678999999999997653 344
Q ss_pred chHHHHHHHHHHHHHc----CCCCCCcEEEEEecchHHHHHHHHHhC------CCceeEEEecCCccchhhhccCC----
Q 003363 650 QDVNDVLTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTT---- 715 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~----~~~d~~rv~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~p~~~~~~~~~~~---- 715 (826)
...+|..+++.|+.++ ..+|++||+|+|-|.||.+|..++.+. +..+++.|++.|++.........
T Consensus 141 a~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~e~~~~ 220 (336)
T KOG1515|consen 141 AAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTESEKQQN 220 (336)
T ss_pred ccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCHHHHHh
Confidence 4689999999999985 458999999999999999999887643 34789999999988654332110
Q ss_pred ----CCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCccc-----ccCCCC-CcEEEEEeCCCCCCCcHHHHHHHHHH
Q 003363 716 ----DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-----HISKVK-TPTIFLLGAQDLRVPVSNGLQYARAL 785 (826)
Q Consensus 716 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-----~~~~i~-~PvLii~G~~D~~vp~~~~~~~~~~l 785 (826)
+...+...+.+.. .-.|...........+|.. ...-.. +|+|++.++.|... +++..++++|
T Consensus 221 ~~~~~~~~~~~~~~~w~------~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~L 292 (336)
T KOG1515|consen 221 LNGSPELARPKIDKWWR------LLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEGLAYAEKL 292 (336)
T ss_pred hcCCcchhHHHHHHHHH------HhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhhh--hhhHHHHHHH
Confidence 0000000000000 0000000000000112222 111222 56999999999877 9999999999
Q ss_pred HhCCCCEEEEEeCCCCCCCCC--C--CCHHHHHHHHHHHHHHH
Q 003363 786 REKGVETKVIVFPNDVHGIER--P--QSDFESFLNIGLWFKKY 824 (826)
Q Consensus 786 ~~~g~~~~~~~~p~~~H~~~~--~--~~~~~~~~~i~~w~~~~ 824 (826)
++.|++++++.++++.|++.. + ....+.+..+.+|+++.
T Consensus 293 kk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 293 KKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 999999999999999998643 2 24456778888888764
No 67
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.66 E-value=1.3e-15 Score=157.01 Aligned_cols=213 Identities=15% Similarity=0.170 Sum_probs=130.1
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|+||++||.+.. ...|...+..|. .||.|+++|+||.+. +.. + ......++..+.+..+++. ++.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G~G~---s~~---~--~~~~~~~~~~~~~~~~i~~--~~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLPALT-PDFRVLRYDKRGHGL---SDA---P--EGPYSIEDLADDVLALLDH--LGI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHHHhh-cccEEEEecCCCCCC---CCC---C--CCCCCHHHHHHHHHHHHHH--hCC
Confidence 56899999996544 345666666664 689999999999543 311 1 1123456666666666654 345
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh---c---cCCCCCCch-hhh-hccCcCCccCCCCCCh--
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---V---GTTDIPDWC-YVE-SYGSKGKDSFTESPSV-- 740 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~---~---~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~-- 740 (826)
+++.++|||+||.+++.++.++|++++++++.++....... . ......... ... .........+......
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 78999999999999999999999999998887764321100 0 000000000 000 0000000000000000
Q ss_pred hhH----------------HHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 741 EDL----------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 741 ~~~----------------~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
+.. ..+...+....+.++++|+|+++|++|..+|.+....+.+.+.+ .+++++++++|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~~gH~~ 234 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVPG----ARFAEIRGAGHIP 234 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCCC----ceEEEECCCCCcc
Confidence 000 01111222344667889999999999999999988877777653 6888999999987
Q ss_pred CCCCCHHHHHHHHHHHH
Q 003363 805 ERPQSDFESFLNIGLWF 821 (826)
Q Consensus 805 ~~~~~~~~~~~~i~~w~ 821 (826)
.... ..++.+.+.+||
T Consensus 235 ~~~~-p~~~~~~i~~fl 250 (251)
T TIGR02427 235 CVEQ-PEAFNAALRDFL 250 (251)
T ss_pred cccC-hHHHHHHHHHHh
Confidence 6544 446777777776
No 68
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.66 E-value=3.6e-15 Score=154.81 Aligned_cols=217 Identities=15% Similarity=0.127 Sum_probs=128.1
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
.....|.||++||.+.. ...|...+..|+ .+|.|+.+|+||.| .+.. +.. ..+.+..+.+..+++.
T Consensus 12 ~~~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G---~s~~---~~~---~~~~~~~~d~~~~l~~-- 77 (255)
T PRK10673 12 NPHNNSPIVLVHGLFGS--LDNLGVLARDLV-NDHDIIQVDMRNHG---LSPR---DPV---MNYPAMAQDLLDTLDA-- 77 (255)
T ss_pred CCCCCCCEEEECCCCCc--hhHHHHHHHHHh-hCCeEEEECCCCCC---CCCC---CCC---CCHHHHHHHHHHHHHH--
Confidence 44566889999997655 345666666775 47999999999954 3321 111 2333333333333333
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc-chh-----hhc------cCCCCCCchh-hh----hccCcC
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLA-----LMV------GTTDIPDWCY-VE----SYGSKG 730 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~-~~~-----~~~------~~~~~~~~~~-~~----~~~~~~ 730 (826)
+..+++.|+|||+||.+++.++.++|++++++|+.++.. ... .+. .......+.. .. ......
T Consensus 78 l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (255)
T PRK10673 78 LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEG 157 (255)
T ss_pred cCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHH
Confidence 244679999999999999999999999999998864311 100 000 0000000000 00 000000
Q ss_pred -----CccCCCCC----ChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 003363 731 -----KDSFTESP----SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 801 (826)
Q Consensus 731 -----~~~~~~~~----~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~ 801 (826)
...+.... .......+........+.++++|+|+++|++|..++.+..+.+.+.+. .+++++++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~g 233 (255)
T PRK10673 158 VIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFP----QARAHVIAGAG 233 (255)
T ss_pred HHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCC----CcEEEEeCCCC
Confidence 00000000 000011111112223456678999999999999999887777766654 37889999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q 003363 802 HGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 802 H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
|...... ...+.+.+.+||.+
T Consensus 234 H~~~~~~-p~~~~~~l~~fl~~ 254 (255)
T PRK10673 234 HWVHAEK-PDAVLRAIRRYLND 254 (255)
T ss_pred CeeeccC-HHHHHHHHHHHHhc
Confidence 9776444 45788999999875
No 69
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.66 E-value=2.8e-15 Score=140.79 Aligned_cols=145 Identities=21% Similarity=0.372 Sum_probs=112.4
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcE
Q 003363 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 673 (826)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv 673 (826)
+||++||+... ...|...++.|+++||.|+.+|+|+.+.. ....++.++++++.+.. .|.++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDS--------------DGADAVERVLADIRAGY-PDPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTS--------------HHSHHHHHHHHHHHHHH-CTCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCcc--------------chhHHHHHHHHHHHhhc-CCCCcE
Confidence 58999997764 55688889999999999999999995432 11235555555554432 278999
Q ss_pred EEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCccc
Q 003363 674 TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS 753 (826)
Q Consensus 674 ~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 753 (826)
+++|||+||.+++.++.+. ..++++|+.+|..+ ..
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~--------------------------------------------~~ 98 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD--------------------------------------------SE 98 (145)
T ss_dssp EEEEETHHHHHHHHHHHHS-TTESEEEEESESSG--------------------------------------------CH
T ss_pred EEEEEccCcHHHHHHhhhc-cceeEEEEecCccc--------------------------------------------hh
Confidence 9999999999999999987 78999999887211 01
Q ss_pred ccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 754 HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 754 ~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
.+.+.+.|+|+++|++|..+++++.++++++++ .+.+++++++++|+
T Consensus 99 ~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 99 DLAKIRIPVLFIHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp HHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred hhhccCCcEEEEEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 123455699999999999999999999999987 46899999999995
No 70
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.66 E-value=1.2e-14 Score=154.31 Aligned_cols=216 Identities=16% Similarity=0.214 Sum_probs=131.1
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.||++||.+.+ ...|...+..|++.+ .|+++|+||. |.+.... ......+..+.+..+++. ++.+
T Consensus 27 g~~vvllHG~~~~--~~~w~~~~~~L~~~~-~via~D~~G~---G~S~~~~-----~~~~~~~~a~dl~~ll~~--l~~~ 93 (295)
T PRK03592 27 GDPIVFLHGNPTS--SYLWRNIIPHLAGLG-RCLAPDLIGM---GASDKPD-----IDYTFADHARYLDAWFDA--LGLD 93 (295)
T ss_pred CCEEEEECCCCCC--HHHHHHHHHHHhhCC-EEEEEcCCCC---CCCCCCC-----CCCCHHHHHHHHHHHHHH--hCCC
Confidence 3689999997755 457778888888876 9999999994 4442211 112345555555555554 3447
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh---h----------ccCCCCCCchhh--hhccCcCC-ccCC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL---M----------VGTTDIPDWCYV--ESYGSKGK-DSFT 735 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~---~----------~~~~~~~~~~~~--~~~~~~~~-~~~~ 735 (826)
++.++|||+||.+++.++.++|++++++|+.++...... + ............ ..+..... ..+.
T Consensus 94 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (295)
T PRK03592 94 DVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEENVFIERVLPGSIL 173 (295)
T ss_pred CeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchhhHHhhcccCccc
Confidence 899999999999999999999999999999887432100 0 000000000000 00000000 0000
Q ss_pred CCCChhhHHHHh-----------------hcC--------------cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHH
Q 003363 736 ESPSVEDLTRFH-----------------SKS--------------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 784 (826)
Q Consensus 736 ~~~~~~~~~~~~-----------------~~s--------------p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~ 784 (826)
.....+....+. ... ....+.++++|+|+|+|++|..+++....++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~ 253 (295)
T PRK03592 174 RPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTGAIRDWCRS 253 (295)
T ss_pred ccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcHHHHHHHHH
Confidence 000001000000 000 0122467899999999999999966665555544
Q ss_pred HHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 785 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 785 l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+.. +.++++++++||...... ..++.+.+.+|+++.
T Consensus 254 ~~~---~~~~~~i~~~gH~~~~e~-p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 254 WPN---QLEITVFGAGLHFAQEDS-PEEIGAAIAAWLRRL 289 (295)
T ss_pred hhh---hcceeeccCcchhhhhcC-HHHHHHHHHHHHHHh
Confidence 332 368889999999887544 458899999999875
No 71
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.66 E-value=4.2e-15 Score=170.56 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=101.9
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
.+|..|.+.+|.|++ .++.|+||++||...... ..........|+++||+|+++|+||.++++.... ..+
T Consensus 4 ~DG~~L~~~~~~P~~---~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~-----~~~ 75 (550)
T TIGR00976 4 RDGTRLAIDVYRPAG---GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFD-----LLG 75 (550)
T ss_pred CCCCEEEEEEEecCC---CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceE-----ecC
Confidence 467899999999973 458999999998553321 0111224568899999999999999766544321 122
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~ 709 (826)
....+|+.++++|+.++++.+ .+|+++|+|+||.+++.++..+|+.++++|..++..++.
T Consensus 76 ~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~ 135 (550)
T TIGR00976 76 SDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLY 135 (550)
T ss_pred cccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchh
Confidence 457899999999999987666 699999999999999999999999999999999887754
No 72
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.64 E-value=7.4e-15 Score=154.54 Aligned_cols=215 Identities=14% Similarity=0.125 Sum_probs=131.5
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|+||++||.+.. ...|......|++ +|.|+++|+||. |.+... ......++++.+.+..+++. .+.
T Consensus 27 ~~~~vv~~hG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~---G~S~~~----~~~~~~~~~~~~~l~~~i~~--~~~ 94 (278)
T TIGR03056 27 AGPLLLLLHGTGAS--THSWRDLMPPLAR-SFRVVAPDLPGH---GFTRAP----FRFRFTLPSMAEDLSALCAA--EGL 94 (278)
T ss_pred CCCeEEEEcCCCCC--HHHHHHHHHHHhh-CcEEEeecCCCC---CCCCCc----cccCCCHHHHHHHHHHHHHH--cCC
Confidence 35889999997654 4467777777755 699999999994 433211 11123466666666666655 334
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh-c-----------c-CCCCCCchhhhhccCcCCccC---
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-V-----------G-TTDIPDWCYVESYGSKGKDSF--- 734 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-~-----------~-~~~~~~~~~~~~~~~~~~~~~--- 734 (826)
+++.|+|||+||.+++.++.++|++++++|+.++......- . . ......+.............+
T Consensus 95 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (278)
T TIGR03056 95 SPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRD 174 (278)
T ss_pred CCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhc
Confidence 67899999999999999999999999988888765431100 0 0 000000000000000000000
Q ss_pred ----CCCCChh--------------hHHHHhhcC---cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEE
Q 003363 735 ----TESPSVE--------------DLTRFHSKS---PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 793 (826)
Q Consensus 735 ----~~~~~~~--------------~~~~~~~~s---p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 793 (826)
....... ......... ....+.++++|+|+++|++|..+|....+.+.+.+.. ++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~~----~~ 250 (278)
T TIGR03056 175 TGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVPT----AT 250 (278)
T ss_pred cccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhccC----Ce
Confidence 0000000 000000000 1234567889999999999999999988887776654 68
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 794 VIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 794 ~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+++++++||.+.... ..++.+.|.+|++
T Consensus 251 ~~~~~~~gH~~~~e~-p~~~~~~i~~f~~ 278 (278)
T TIGR03056 251 LHVVPGGGHLVHEEQ-ADGVVGLILQAAE 278 (278)
T ss_pred EEEECCCCCcccccC-HHHHHHHHHHHhC
Confidence 899999999876554 4578888888874
No 73
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.64 E-value=1e-15 Score=153.93 Aligned_cols=190 Identities=24% Similarity=0.370 Sum_probs=123.5
Q ss_pred EEEEcCCCCCCCCcc-chHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHc---CCCC
Q 003363 595 IVVLHGGPHSVSLSS-YSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM---GLAN 669 (826)
Q Consensus 595 vv~~HGg~~~~~~~~-~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d 669 (826)
||++|||++...... ....+..+++ .|+.|+.+|||-+++ ......++|+.++++|++++ ..+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeecccccccccc
Confidence 799999998765443 3345566664 999999999998543 23345699999999999997 3478
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCC----ceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChh-hHH
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVE-DLT 744 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 744 (826)
+++|+|+|+|.||.+++.++....+ .++++++.+|+.++... ..+.+........ ..+......+ ...
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 142 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDF----DGPSYDDSNENKD---DPFLPAPKIDWFWK 142 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTS----SCHHHHHHHHHST---TSSSBHHHHHHHHH
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhc----ccccccccccccc---cccccccccccccc
Confidence 9999999999999999998874332 48999999998766100 0000000000000 0000000000 001
Q ss_pred H--------HhhcCcccccCCC--CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 745 R--------FHSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 745 ~--------~~~~sp~~~~~~i--~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
. ....+|+.. ..+ -+|++|++|+.|..+ .++..++++|++.|++++++++++.+|.+.
T Consensus 143 ~~~~~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 143 LYLPGSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp HHHSTGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred cccccccccccccccccc-cccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 1 113445544 123 378999999999876 789999999999999999999999999864
No 74
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.64 E-value=1.4e-14 Score=157.44 Aligned_cols=219 Identities=15% Similarity=0.228 Sum_probs=129.8
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.||++||.+.. ...|...+..|++ +|.|+++|+||. |.+.. +.. ....+++..+.+..+++. +..+
T Consensus 88 gp~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G~---G~S~~---~~~-~~~~~~~~a~~l~~~l~~--l~~~ 155 (360)
T PLN02679 88 GPPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLGF---GASDK---PPG-FSYTMETWAELILDFLEE--VVQK 155 (360)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCC---CCCCC---CCC-ccccHHHHHHHHHHHHHH--hcCC
Confidence 4789999997654 4577777887765 799999999994 44321 111 122344444444444443 2347
Q ss_pred cEEEEEecchHHHHHHHHH-hCCCceeEEEecCCccchhhhccCCC------CC-Cchh---------h----hhcc-Cc
Q 003363 672 KVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTD------IP-DWCY---------V----ESYG-SK 729 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~p~~~~~~~~~~~~------~~-~~~~---------~----~~~~-~~ 729 (826)
++.|+|||+||.+++.++. .+|++++++|++++............ .+ .|.+ . .... ..
T Consensus 156 ~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (360)
T PLN02679 156 PTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRD 235 (360)
T ss_pred CeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHH
Confidence 8999999999999988876 47999999999886432110000000 00 0000 0 0000 00
Q ss_pred CC-----ccCCCC--CCh----------------hhHHHHhh----cCcccccCCCCCcEEEEEeCCCCCCCcHHH-HHH
Q 003363 730 GK-----DSFTES--PSV----------------EDLTRFHS----KSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQY 781 (826)
Q Consensus 730 ~~-----~~~~~~--~~~----------------~~~~~~~~----~sp~~~~~~i~~PvLii~G~~D~~vp~~~~-~~~ 781 (826)
.. ..+... ... +....+.. .+....+.++++|+|+++|++|..+|+... .++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~ 315 (360)
T PLN02679 236 NLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKY 315 (360)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHH
Confidence 00 000000 000 00011111 111234678899999999999999998753 234
Q ss_pred HHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 782 ARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 782 ~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
++.+.+.-.+.++++++++||....+. ..++.+.+.+||++
T Consensus 316 ~~~l~~~ip~~~l~~i~~aGH~~~~E~-Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 316 FSSLPSQLPNVTLYVLEGVGHCPHDDR-PDLVHEKLLPWLAQ 356 (360)
T ss_pred HHhhhccCCceEEEEcCCCCCCccccC-HHHHHHHHHHHHHh
Confidence 455554444689999999999876544 55888999999976
No 75
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.64 E-value=1.1e-14 Score=160.40 Aligned_cols=236 Identities=15% Similarity=0.164 Sum_probs=139.8
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-HHHHHH---HCCcEEEEECCCCCCCCchhhhhcCCC
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLS---SVGYSLLIVNYRGSLGFGEEALQSLPG 645 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-~~~~la---~~G~~Vl~~d~rG~~g~G~~~~~~~~~ 645 (826)
...+..++.....|.+ ....|.||++||.+.. ...|.. .+..|+ +.+|.|+++|+|| +|.+.. +.
T Consensus 182 ~~~~~~l~~~~~gp~~---~~~k~~VVLlHG~~~s--~~~W~~~~~~~L~~~~~~~yrVia~Dl~G---~G~S~~---p~ 250 (481)
T PLN03087 182 SSSNESLFVHVQQPKD---NKAKEDVLFIHGFISS--SAFWTETLFPNFSDAAKSTYRLFAVDLLG---FGRSPK---PA 250 (481)
T ss_pred eeCCeEEEEEEecCCC---CCCCCeEEEECCCCcc--HHHHHHHHHHHHHHHhhCCCEEEEECCCC---CCCCcC---CC
Confidence 3345677777777763 2334789999997655 334543 234444 4799999999999 444321 11
Q ss_pred CCCcchHHHHHHHH-HHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh-------c--cCC
Q 003363 646 KVGSQDVNDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------V--GTT 715 (826)
Q Consensus 646 ~~~~~~~~D~~~~i-~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-------~--~~~ 715 (826)
. ....+++..+.+ +.+++. .+.+++.++||||||.+++.++.++|++++++|+.+|....... . ...
T Consensus 251 ~-~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~~~~~~~~~ 327 (481)
T PLN03087 251 D-SLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQATQYVMRKVA 327 (481)
T ss_pred C-CcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHHHHHHHHhc
Confidence 1 113455555555 345554 34578999999999999999999999999999998864321100 0 000
Q ss_pred CCCCch----------hhhhccCcC----------Ccc----CCCCCChh----------------hHHHHhhcC-----
Q 003363 716 DIPDWC----------YVESYGSKG----------KDS----FTESPSVE----------------DLTRFHSKS----- 750 (826)
Q Consensus 716 ~~~~~~----------~~~~~~~~~----------~~~----~~~~~~~~----------------~~~~~~~~s----- 750 (826)
....|. ..+...... ... +....... ....+....
T Consensus 328 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~l~ 407 (481)
T PLN03087 328 PRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNIICGSGSKLD 407 (481)
T ss_pred ccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHHhchhhhhh
Confidence 000000 000000000 000 00000000 000000000
Q ss_pred c-c-cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 751 P-I-SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 751 p-~-~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
. + ....++++|+|+++|++|..+|++.++.+.+.+.. +++++++++||.....+....+...+.+|...
T Consensus 408 ~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP~----a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 408 GYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKVPR----ARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred hHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhCCC----CEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 0 0 11236899999999999999999999888888764 79999999999866444455788888888753
No 76
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.63 E-value=1.6e-15 Score=158.37 Aligned_cols=223 Identities=18% Similarity=0.223 Sum_probs=141.6
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH--------HHHHHHHCCcEEEEECCCCCCCCchhhhhcC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--------SLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 643 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~--------~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~ 643 (826)
||..|.+.+|.| +....++.|+||..|+............ ....|+++||+|+++|.||.++++..+..
T Consensus 1 DGv~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~-- 77 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDP-- 77 (272)
T ss_dssp TS-EEEEEEEEE---TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-T--
T ss_pred CCCEEEEEEEec-CCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCcccc--
Confidence 578899999999 4447899999999998553210000000 11238999999999999998777665531
Q ss_pred CCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh-hcc---CCCC--
Q 003363 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVG---TTDI-- 717 (826)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-~~~---~~~~-- 717 (826)
....+.+|..++|+|+.++++.+ .||+++|.|++|+.++.+|+..|..++|++...+..|+.. ... ....
T Consensus 78 ---~~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~~ 153 (272)
T PF02129_consen 78 ---MSPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLGF 153 (272)
T ss_dssp ---TSHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCCH
T ss_pred ---CChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcccccc
Confidence 16678999999999999997654 7999999999999999999988889999999988877644 111 0011
Q ss_pred -CCchhhh----hccCcCC--------------------ccCCCC-C-------ChhhHHHHhhcCcccccCCCCCcEEE
Q 003363 718 -PDWCYVE----SYGSKGK--------------------DSFTES-P-------SVEDLTRFHSKSPISHISKVKTPTIF 764 (826)
Q Consensus 718 -~~~~~~~----~~~~~~~--------------------~~~~~~-~-------~~~~~~~~~~~sp~~~~~~i~~PvLi 764 (826)
..|.... ....... ...... + .......+.+.++...+.++++|+|+
T Consensus 154 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP~l~ 233 (272)
T PF02129_consen 154 FAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVPVLI 233 (272)
T ss_dssp HHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SEEEE
T ss_pred hhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCCEEE
Confidence 1220000 0000000 000000 0 00011223344455567899999999
Q ss_pred EEeCCCCCCCcHHHHHHHHHHHhCC-CCEEEEEeCCCCCC
Q 003363 765 LLGAQDLRVPVSNGLQYARALREKG-VETKVIVFPNDVHG 803 (826)
Q Consensus 765 i~G~~D~~vp~~~~~~~~~~l~~~g-~~~~~~~~p~~~H~ 803 (826)
+.|..|.... ..+.+.+++|+..+ .+.++++-|. +|+
T Consensus 234 v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 234 VGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred ecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 9999996666 89999999999988 6778888765 564
No 77
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.61 E-value=2.1e-14 Score=151.61 Aligned_cols=218 Identities=15% Similarity=0.214 Sum_probs=127.1
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|.||++||++++. ...+......+.+.||.|+++|+||.+ .+.... .......++++.+.+..+++. ++.
T Consensus 24 ~~~~vl~~hG~~g~~-~~~~~~~~~~l~~~g~~vi~~d~~G~G---~s~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~ 95 (288)
T TIGR01250 24 EKIKLLLLHGGPGMS-HEYLENLRELLKEEGREVIMYDQLGCG---YSDQPD--DSDELWTIDYFVDELEEVREK--LGL 95 (288)
T ss_pred CCCeEEEEcCCCCcc-HHHHHHHHHHHHhcCCEEEEEcCCCCC---CCCCCC--cccccccHHHHHHHHHHHHHH--cCC
Confidence 357899999987553 223344445556669999999999954 332110 000013456666666666665 345
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc-----CCCCCC-ch-hhhhccCcC----------Ccc
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----TTDIPD-WC-YVESYGSKG----------KDS 733 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-----~~~~~~-~~-~~~~~~~~~----------~~~ 733 (826)
+++.++|||+||.+++.++..+|++++++|+.+++........ ....+. .. ......... ...
T Consensus 96 ~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (288)
T TIGR01250 96 DKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQEAVEV 175 (288)
T ss_pred CcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 6799999999999999999999999999998877543211100 000000 00 000000000 000
Q ss_pred C------CCCCChhhHHH------------------------HhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHH
Q 003363 734 F------TESPSVEDLTR------------------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 783 (826)
Q Consensus 734 ~------~~~~~~~~~~~------------------------~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~ 783 (826)
+ ......+.... +........+.++++|+|+++|+.|. +++.....+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~-~~~~~~~~~~~ 254 (288)
T TIGR01250 176 FYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDT-MTPEAAREMQE 254 (288)
T ss_pred HHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCc-cCHHHHHHHHH
Confidence 0 00000000000 00011123456789999999999998 46677766666
Q ss_pred HHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 784 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 784 ~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
.+.. .++++++++||..... ...++.+.+.+||+
T Consensus 255 ~~~~----~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 255 LIAG----SRLVVFPDGSHMTMIE-DPEVYFKLLSDFIR 288 (288)
T ss_pred hccC----CeEEEeCCCCCCcccC-CHHHHHHHHHHHhC
Confidence 5543 6788999999987754 44578888888874
No 78
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.61 E-value=4.9e-15 Score=154.72 Aligned_cols=238 Identities=12% Similarity=0.121 Sum_probs=140.2
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
.+|..+.|+++.|.+ . +.+.||++|||+.... ...+...+..|+++||.|+++|+||.+ .+... ... .
T Consensus 9 ~~~~~l~g~~~~p~~---~-~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G---~S~~~--~~~-~ 78 (274)
T TIGR03100 9 CEGETLVGVLHIPGA---S-HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMG---DSEGE--NLG-F 78 (274)
T ss_pred cCCcEEEEEEEcCCC---C-CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCC---CCCCC--CCC-H
Confidence 356789999999863 2 2356777777654321 223455678899999999999999954 33211 011 1
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccC
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 728 (826)
....+|+.++++++.+.. -..++|.++|||+||.+++.++.. ++.++++|+.+|.......... ......+......
T Consensus 79 ~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~-~~~~~~~~~~~~~ 155 (274)
T TIGR03100 79 EGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAA-SRIRHYYLGQLLS 155 (274)
T ss_pred HHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchH-HHHHHHHHHHHhC
Confidence 123678999999988752 123679999999999999988765 5689999999987431110000 0000000000000
Q ss_pred -cCCcc-CCCCCChh-hHHHHhh----c---C-----------cccccCCCCCcEEEEEeCCCCCCCcHHH-----HHHH
Q 003363 729 -KGKDS-FTESPSVE-DLTRFHS----K---S-----------PISHISKVKTPTIFLLGAQDLRVPVSNG-----LQYA 782 (826)
Q Consensus 729 -~~~~~-~~~~~~~~-~~~~~~~----~---s-----------p~~~~~~i~~PvLii~G~~D~~vp~~~~-----~~~~ 782 (826)
..... +.+..... ....+.. . . -...+.++++|+|+++|+.|...+.... .+..
T Consensus 156 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~~~~~~~~~~~~ 235 (274)
T TIGR03100 156 ADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEFADSVLGEPAWR 235 (274)
T ss_pred hHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHHHHHhccChhhH
Confidence 00000 00000000 0000000 0 0 0123456789999999999987521110 1222
Q ss_pred HHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 783 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 783 ~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+.+.. ..++++.+|+++|.+.......++...|.+||++
T Consensus 236 ~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 236 GALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 22321 3588999999999887777777899999999964
No 79
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.60 E-value=2e-14 Score=144.61 Aligned_cols=191 Identities=19% Similarity=0.237 Sum_probs=113.6
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHH-HHHHCCcEEEEECCCC---CCCCch---hhhhcCCCCC-CcchHHHH----
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRG---SLGFGE---EALQSLPGKV-GSQDVNDV---- 655 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~Vl~~d~rG---~~g~G~---~~~~~~~~~~-~~~~~~D~---- 655 (826)
..+..|+||++||.+... ..+..... .+......++.++-+. ....|. .|.+...... ...+.+++
T Consensus 10 ~~~~~~lvi~LHG~G~~~--~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~ 87 (216)
T PF02230_consen 10 KGKAKPLVILLHGYGDSE--DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESA 87 (216)
T ss_dssp SST-SEEEEEE--TTS-H--HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHH
T ss_pred CCCCceEEEEECCCCCCc--chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHH
Confidence 467789999999965432 22222222 1223457777776431 001122 3422211111 11122332
Q ss_pred ---HHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCc
Q 003363 656 ---LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 732 (826)
Q Consensus 656 ---~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (826)
.+.++...+.+ ++++||+|+|+|.||.+++.++.++|+.+.++|+.++.......
T Consensus 88 ~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~--------------------- 145 (216)
T PF02230_consen 88 ERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE--------------------- 145 (216)
T ss_dssp HHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC---------------------
T ss_pred HHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc---------------------
Confidence 23333333333 89999999999999999999999999999999999885421100
Q ss_pred cCCCCCChhhHHHHhhcCcccccCC-CCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHH
Q 003363 733 SFTESPSVEDLTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 811 (826)
Q Consensus 733 ~~~~~~~~~~~~~~~~~sp~~~~~~-i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~ 811 (826)
. . ..... -++|++++||..|+++|.+.++..++.|++.+.++++..|++.||.+. .
T Consensus 146 ------~-~-----------~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~ 202 (216)
T PF02230_consen 146 ------L-E-----------DRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----P 202 (216)
T ss_dssp ------C-H-----------CCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------H
T ss_pred ------c-c-----------ccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----H
Confidence 0 0 00011 168999999999999999999999999999999999999999999885 4
Q ss_pred HHHHHHHHHHHHHc
Q 003363 812 ESFLNIGLWFKKYC 825 (826)
Q Consensus 812 ~~~~~i~~w~~~~l 825 (826)
+.+..+.+||++++
T Consensus 203 ~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 203 EELRDLREFLEKHI 216 (216)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhC
Confidence 77889999999875
No 80
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.60 E-value=7.4e-14 Score=151.33 Aligned_cols=262 Identities=17% Similarity=0.184 Sum_probs=163.4
Q ss_pred CCCCCeEEEEecCCC-----CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 162 SPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 162 SPdG~~la~~~~~~~-----~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
||||+++++..+..+ ....+++.+ ..++.+++....... ..+.|||||+.|||+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~----------~~~~~sP~g~~~~~v~--------- 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKL----------QDAKWSPDGKYIAFVR--------- 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTB----------SEEEE-SSSTEEEEEE---------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcccc----------ccceeecCCCeeEEEe---------
Confidence 899999999765421 222345444 344444443321122 7899999999999983
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC--C--------------C-ccc
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK--S--------------L-SVG 298 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~--~--------------~-~~~ 298 (826)
..+||+.+..+++.++|+ ..+ . + ...
T Consensus 62 ------------------------------------~~nly~~~~~~~~~~~lT-~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 62 ------------------------------------DNNLYLRDLATGQETQLT-TDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp ------------------------------------TTEEEEESSTTSEEEESE-S--TTTEEESB--HHHHHHTSSSSB
T ss_pred ------------------------------------cCceEEEECCCCCeEEec-cccceeEEcCccceecccccccccc
Confidence 368999999999988885 111 0 1 224
Q ss_pred eEEEeeCCCCCccEEEEEeecCc-ce----------------eeeeeeec----cCCCceEEEEcccccchhhhhhhhcC
Q 003363 299 QVVWAPLNEGLHQYLVFVGWSSE-TR----------------KLGIKYCY----NRPCALYAVRVSLYKSEASELELKES 357 (826)
Q Consensus 299 ~~~wSPDg~~~~~~lvf~~~~~~-~~----------------~~g~~~~~----~~~~~l~~~d~~~~~~~~~~~~~~~~ 357 (826)
.+.|||||++ |+|...... .+ ..-+.|.. |....|+++|+
T Consensus 105 ~~~WSpd~~~----la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~--------------- 165 (353)
T PF00930_consen 105 AVWWSPDSKY----LAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL--------------- 165 (353)
T ss_dssp SEEE-TTSSE----EEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES---------------
T ss_pred ceEECCCCCE----EEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC---------------
Confidence 6789999999 999765433 11 11222211 22235777776
Q ss_pred CCCCCcceecC------CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeee
Q 003363 358 SSEDLPVVNLT------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (826)
Q Consensus 358 ~~~~~~~~~Lt------~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 431 (826)
++++...+. ........+.|++|+++|++....+. +....|.++|..++..+.+.... .+.
T Consensus 166 --~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~------q~~~~l~~~d~~tg~~~~~~~e~---~~~-- 232 (353)
T PF00930_consen 166 --ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD------QNRLDLVLCDASTGETRVVLEET---SDG-- 232 (353)
T ss_dssp --SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT------STEEEEEEEEECTTTCEEEEEEE---SSS--
T ss_pred --CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccC------CCEEEEEEEECCCCceeEEEEec---CCc--
Confidence 555543332 23445778999999997777766542 34567888898876553322111 010
Q ss_pred ccCCCCCcccccCCCCCCccc-cCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCe-eeEEEeecCCEEEEEEeCC
Q 003363 432 CAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF-SWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws-~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~-~~~~~s~dg~~l~~~~s~~ 509 (826)
|-.....+.|. +++..+++.+...|..+||.++.+++..++||.+...+ ....++.+++.|+|.+...
T Consensus 233 ----------Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~ 302 (353)
T PF00930_consen 233 ----------WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD 302 (353)
T ss_dssp ----------SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred ----------ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCC
Confidence 11122234454 88888999888889999999999999999999998866 4467888899999998773
Q ss_pred C-CCCeEEEEeec
Q 003363 510 V-DVPQVKYGYFV 521 (826)
Q Consensus 510 ~-~p~~l~~~~~~ 521 (826)
. .-..||.+++.
T Consensus 303 ~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 303 NPGERHLYRVSLD 315 (353)
T ss_dssp GTTSBEEEEEETT
T ss_pred CCCceEEEEEEeC
Confidence 3 22346666665
No 81
>PRK11071 esterase YqiA; Provisional
Probab=99.60 E-value=3.2e-14 Score=139.10 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=116.8
Q ss_pred cEEEEEcCCCCCCCCccch--HHHHHHHH--CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 593 PLIVVLHGGPHSVSLSSYS--KSLAFLSS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~--~~~~~la~--~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
|.||++||.+.+ ...|. .....|++ .+|.|+++|++| ++ ++..+.+..++++ .
T Consensus 2 p~illlHGf~ss--~~~~~~~~~~~~l~~~~~~~~v~~~dl~g---~~----------------~~~~~~l~~l~~~--~ 58 (190)
T PRK11071 2 STLLYLHGFNSS--PRSAKATLLKNWLAQHHPDIEMIVPQLPP---YP----------------ADAAELLESLVLE--H 58 (190)
T ss_pred CeEEEECCCCCC--cchHHHHHHHHHHHHhCCCCeEEeCCCCC---CH----------------HHHHHHHHHHHHH--c
Confidence 679999996655 33444 23455655 379999999998 32 2344555555554 2
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh-hccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHh
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 747 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (826)
+.+++.++|+|+||++++.++.++|. .+|+.+|..+... .......... .+. ...+. ...+..+...
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~---~~vl~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~--~~~~~~~d~~ 126 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML---PAVVVNPAVRPFELLTDYLGENEN----PYT---GQQYV--LESRHIYDLK 126 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC---CEEEECCCCCHHHHHHHhcCCccc----ccC---CCcEE--EcHHHHHHHH
Confidence 34689999999999999999999883 3467777665311 1100000000 000 00000 1122333333
Q ss_pred hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 748 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 748 ~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
...+.. +. ..+|++++||++|+.||++.+.++++. +++++++|++|.+... .+....+.+|+.
T Consensus 127 ~~~~~~-i~-~~~~v~iihg~~De~V~~~~a~~~~~~-------~~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 127 VMQIDP-LE-SPDLIWLLQQTGDEVLDYRQAVAYYAA-------CRQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred hcCCcc-CC-ChhhEEEEEeCCCCcCCHHHHHHHHHh-------cceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 333322 33 667899999999999999999999984 3566789999999644 567888888874
No 82
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.60 E-value=2.7e-14 Score=147.00 Aligned_cols=212 Identities=15% Similarity=0.187 Sum_probs=126.4
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHH-HHHHHHcCCCCCC
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPS 671 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 671 (826)
|+||++||.+.. ...|......|+ +||.|+++|+||.+.... +......+.+++... +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~~--~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGS--GADWQALIELLG-PHFRCLAIDLPGHGSSQS------PDEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCc--hhhHHHHHHHhc-ccCeEEEEcCCCCCCCCC------CCccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 789999997654 456777888887 899999999999544311 111223345555555 5555554 3557
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC----CCCCCch----------hhhhccC-cCCccCCC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----TDIPDWC----------YVESYGS-KGKDSFTE 736 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~----~~~~~~~----------~~~~~~~-~~~~~~~~ 736 (826)
++.++|||+||.+++.++.++|+.++++++.++...+...... .....+. +...+.. ........
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLFASQKN 150 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCceeeeccc
Confidence 8999999999999999999999999999998875432110000 0000000 0000000 00000000
Q ss_pred CCC---------------hhhHHHHh------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEE
Q 003363 737 SPS---------------VEDLTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 795 (826)
Q Consensus 737 ~~~---------------~~~~~~~~------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 795 (826)
... ......+. ..+....+.++++|+|+++|++|..++ .. .+.+.+.....+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~----~~~~~~~~~~~~~~ 225 (251)
T TIGR03695 151 LPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QI----AKEMQKLLPNLTLV 225 (251)
T ss_pred CChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HH----HHHHHhcCCCCcEE
Confidence 000 00000110 112223456789999999999998653 22 23344444457899
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 796 VFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 796 ~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
++|++||.+..... .++...|.+||
T Consensus 226 ~~~~~gH~~~~e~~-~~~~~~i~~~l 250 (251)
T TIGR03695 226 IIANAGHNIHLENP-EAFAKILLAFL 250 (251)
T ss_pred EEcCCCCCcCccCh-HHHHHHHHHHh
Confidence 99999998765544 46777788876
No 83
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.60 E-value=8.3e-14 Score=139.68 Aligned_cols=227 Identities=17% Similarity=0.174 Sum_probs=144.4
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
...+.|+||.+||-.++.........+..+.++||.|+++|.||+++.-.. .+.-+.....+|+..+++++.+..
T Consensus 71 ~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~p~~yh~G~t~D~~~~l~~l~~~~- 145 (345)
T COG0429 71 RAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANT----SPRLYHSGETEDIRFFLDWLKARF- 145 (345)
T ss_pred cccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCccc----CcceecccchhHHHHHHHHHHHhC-
Confidence 355669999999965554444444577788999999999999997654321 133333345699999999999864
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCC--ceeEEEecCCccchhhhccCCCCCCc-hhhh--------------------
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLCNLALMVGTTDIPDW-CYVE-------------------- 724 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p~~~~~~~~~~~~~~~~-~~~~-------------------- 724 (826)
.+.++..+|.|+||.+.+.++++..+ .+.+++.++-.+|+.......+...+ .+..
T Consensus 146 -~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~ 224 (345)
T COG0429 146 -PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGFSLRLYSRYLLRNLKRNAARKLKELEP 224 (345)
T ss_pred -CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 36789999999999555555554332 34555555554554222111111111 0000
Q ss_pred -----------------hccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHh
Q 003363 725 -----------------SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 787 (826)
Q Consensus 725 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~ 787 (826)
.+.........+. .+..+.|...|.+..+.+|.+|+||||..+|++++++..-.....
T Consensus 225 ~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf--~da~dYYr~aSs~~~L~~Ir~PtLii~A~DDP~~~~~~iP~~~~~--- 299 (345)
T COG0429 225 SLPGTVLAAIKRCRTIREFDDLLTAPLHGF--ADAEDYYRQASSLPLLPKIRKPTLIINAKDDPFMPPEVIPKLQEM--- 299 (345)
T ss_pred ccCcHHHHHHHhhchHHhccceeeecccCC--CcHHHHHHhccccccccccccceEEEecCCCCCCChhhCCcchhc---
Confidence 0000001111122 244566778899999999999999999999999987554333222
Q ss_pred CCCCEEEEEeCCCCCCCC-C-C--CCHHHHHHHHHHHHHHHc
Q 003363 788 KGVETKVIVFPNDVHGIE-R-P--QSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 788 ~g~~~~~~~~p~~~H~~~-~-~--~~~~~~~~~i~~w~~~~l 825 (826)
.+..+.+.+-+-+||.-. . . ....-..+++.+||+.++
T Consensus 300 ~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~ 341 (345)
T COG0429 300 LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFL 341 (345)
T ss_pred CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHH
Confidence 345689999999999622 1 1 111245578999998875
No 84
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.60 E-value=8.1e-15 Score=150.58 Aligned_cols=206 Identities=17% Similarity=0.197 Sum_probs=125.5
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|.||++||.+.. ...|...+..|+ .+|.|+++|+||.+. +.. ....+++++.+ .+.+. + .++
T Consensus 5 ~~iv~~HG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G~G~---s~~------~~~~~~~~~~~---~~~~~--~-~~~ 66 (245)
T TIGR01738 5 VHLVLIHGWGMN--AEVFRCLDEELS-AHFTLHLVDLPGHGR---SRG------FGPLSLADAAE---AIAAQ--A-PDP 66 (245)
T ss_pred ceEEEEcCCCCc--hhhHHHHHHhhc-cCeEEEEecCCcCcc---CCC------CCCcCHHHHHH---HHHHh--C-CCC
Confidence 679999996554 456777777775 479999999999543 321 11123444444 33333 2 268
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCC-CCC-------------Cch-hhhh------ccCcCC
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-DIP-------------DWC-YVES------YGSKGK 731 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~-~~~-------------~~~-~~~~------~~~~~~ 731 (826)
+.++|||+||.+++.++.++|++++++|+.++...+....... ... .+. .... ++....
T Consensus 67 ~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (245)
T TIGR01738 67 AIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPTA 146 (245)
T ss_pred eEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999877643221000000 000 000 0000 000000
Q ss_pred c--------cC--CCCCChhh----HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEe
Q 003363 732 D--------SF--TESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 797 (826)
Q Consensus 732 ~--------~~--~~~~~~~~----~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 797 (826)
. .+ ...+.... ...+...+....+.++++|+|+++|++|..+|++....+.+.++ .++++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~ 222 (245)
T TIGR01738 147 RQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYIF 222 (245)
T ss_pred chHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEEe
Confidence 0 00 00000000 01111112223467899999999999999999988887777665 3788999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 798 PNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 798 p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
+++||.....+ ..++.+.+.+|+
T Consensus 223 ~~~gH~~~~e~-p~~~~~~i~~fi 245 (245)
T TIGR01738 223 AKAAHAPFLSH-AEAFCALLVAFK 245 (245)
T ss_pred CCCCCCccccC-HHHHHHHHHhhC
Confidence 99999877554 447778888774
No 85
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.59 E-value=4.9e-14 Score=154.90 Aligned_cols=222 Identities=17% Similarity=0.208 Sum_probs=127.1
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc-chHH-HHHHHHHHHHHcCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS-QDVN-DVLTAIDHVIDMGL 667 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~-~~~~-D~~~~i~~l~~~~~ 667 (826)
+..|+||++||.+.. ...|...+..|++ +|.|+++|+||.+...+. . ..... .... .+.+.+..+++.
T Consensus 103 ~~~p~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~---~--~~~~~~~~~~~~~~~~i~~~~~~-- 172 (402)
T PLN02894 103 EDAPTLVMVHGYGAS--QGFFFRNFDALAS-RFRVIAIDQLGWGGSSRP---D--FTCKSTEETEAWFIDSFEEWRKA-- 172 (402)
T ss_pred CCCCEEEEECCCCcc--hhHHHHHHHHHHh-CCEEEEECCCCCCCCCCC---C--cccccHHHHHHHHHHHHHHHHHH--
Confidence 456899999997654 3455566677765 599999999995543221 1 01111 1111 223333333333
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc----C-CCCCCch---------------------
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----T-TDIPDWC--------------------- 721 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~-~~~~~~~--------------------- 721 (826)
.+.+++.|+||||||++++.++.++|++++++|+.+|..-...... . .....|.
T Consensus 173 l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 252 (402)
T PLN02894 173 KNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKIIRGL 252 (402)
T ss_pred cCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHHHhc
Confidence 3456899999999999999999999999999999887531110000 0 0000010
Q ss_pred ------hhhhccCcCC-ccCCC--CC--ChhhHHH------------------H-----hhcCcc-cccCCCCCcEEEEE
Q 003363 722 ------YVESYGSKGK-DSFTE--SP--SVEDLTR------------------F-----HSKSPI-SHISKVKTPTIFLL 766 (826)
Q Consensus 722 ------~~~~~~~~~~-~~~~~--~~--~~~~~~~------------------~-----~~~sp~-~~~~~i~~PvLii~ 766 (826)
....+..... ..... .. ..+.... + ....+. ..+.++++|+|+++
T Consensus 253 gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~liI~ 332 (402)
T PLN02894 253 GPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTTFIY 332 (402)
T ss_pred cchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEEEEE
Confidence 0000000000 00000 00 0000000 0 001222 34677899999999
Q ss_pred eCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 003363 767 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 767 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l~ 826 (826)
|++|..++ ....++.+.+ +..+++++++++||.....+. ..+.+.+.+|++.++.
T Consensus 333 G~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~~~E~P-~~f~~~l~~~~~~~~~ 387 (402)
T PLN02894 333 GRHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFVFLDNP-SGFHSAVLYACRKYLS 387 (402)
T ss_pred eCCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCeeeccCH-HHHHHHHHHHHHHhcc
Confidence 99998654 5555554443 335789999999997665544 4788899999888763
No 86
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.58 E-value=4.6e-14 Score=148.66 Aligned_cols=210 Identities=15% Similarity=0.191 Sum_probs=126.9
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.||++||.+.. ...|...+..|. .+|.|+++|+||.+.++.. .. .....+++.+.+..+++. ++.+
T Consensus 34 ~~~iv~lHG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~------~~-~~~~~~~~~~~~~~~~~~--~~~~ 101 (286)
T PRK03204 34 GPPILLCHGNPTW--SFLYRDIIVALR-DRFRCVAPDYLGFGLSERP------SG-FGYQIDEHARVIGEFVDH--LGLD 101 (286)
T ss_pred CCEEEEECCCCcc--HHHHHHHHHHHh-CCcEEEEECCCCCCCCCCC------Cc-cccCHHHHHHHHHHHHHH--hCCC
Confidence 4789999997633 345666667775 4699999999995433211 11 123567888888887776 3457
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh---------hhccCCCCCCch-----hhhhccCcCCccCCCC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWC-----YVESYGSKGKDSFTES 737 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~---------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 737 (826)
++.++|||+||.++..++..+|++++++|+.++..-.. ............ +...+... .....
T Consensus 102 ~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 178 (286)
T PRK03204 102 RYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPA---GTEHR 178 (286)
T ss_pred CEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccc---cccCC
Confidence 89999999999999999999999999999877643100 000000000000 00000000 00000
Q ss_pred CChhhHHHHh-----------------h---cCc-cc----ccC--CCCCcEEEEEeCCCCCCCcH-HHHHHHHHHHhCC
Q 003363 738 PSVEDLTRFH-----------------S---KSP-IS----HIS--KVKTPTIFLLGAQDLRVPVS-NGLQYARALREKG 789 (826)
Q Consensus 738 ~~~~~~~~~~-----------------~---~sp-~~----~~~--~i~~PvLii~G~~D~~vp~~-~~~~~~~~l~~~g 789 (826)
...+....+. . ..+ .. .+. .+++|+|+++|++|..+++. .++.+.+.+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip~-- 256 (286)
T PRK03204 179 PSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATFPD-- 256 (286)
T ss_pred CCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhcCC--
Confidence 0000000000 0 000 00 011 12799999999999988665 45566666654
Q ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 790 VETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 790 ~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
.++++++++||....... .++.+.+.+||
T Consensus 257 --~~~~~i~~aGH~~~~e~P-e~~~~~i~~~~ 285 (286)
T PRK03204 257 --HVLVELPNAKHFIQEDAP-DRIAAAIIERF 285 (286)
T ss_pred --CeEEEcCCCcccccccCH-HHHHHHHHHhc
Confidence 689999999998775544 47788888886
No 87
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.58 E-value=3.2e-14 Score=147.77 Aligned_cols=206 Identities=20% Similarity=0.202 Sum_probs=125.6
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|.||++||.+.+ ...|...+..|.+ .|.|+++|+||. |.+.. + .....+++.+ .+.+. ..++
T Consensus 14 ~~ivllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~---G~S~~---~---~~~~~~~~~~---~l~~~---~~~~ 75 (256)
T PRK10349 14 VHLVLLHGWGLN--AEVWRCIDEELSS-HFTLHLVDLPGF---GRSRG---F---GALSLADMAE---AVLQQ---APDK 75 (256)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHhc-CCEEEEecCCCC---CCCCC---C---CCCCHHHHHH---HHHhc---CCCC
Confidence 569999996654 4578778888865 599999999994 44321 1 1123444443 33333 2478
Q ss_pred EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCC-CCc-------------hhhhh------ccCcCC-
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI-PDW-------------CYVES------YGSKGK- 731 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~-~~~-------------~~~~~------~~~~~~- 731 (826)
+.++|||+||++++.++.++|++++++|++++............. ..+ ..... +.....
T Consensus 76 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
T PRK10349 76 AIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETAR 155 (256)
T ss_pred eEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchHH
Confidence 999999999999999999999999999988763221000000000 000 00000 000000
Q ss_pred -------ccCCC--CCChhh----HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC
Q 003363 732 -------DSFTE--SPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 798 (826)
Q Consensus 732 -------~~~~~--~~~~~~----~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p 798 (826)
..+.. .+.... ...+...+....+.++++|+|+++|+.|..+|.+.+..+.+.+++ .+++++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~----~~~~~i~ 231 (256)
T PRK10349 156 QDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPH----SESYIFA 231 (256)
T ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCCC----CeEEEeC
Confidence 00000 000000 011122333445778999999999999999998887766666654 6899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH
Q 003363 799 NDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 799 ~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
++||....... ..+...+.+|-
T Consensus 232 ~~gH~~~~e~p-~~f~~~l~~~~ 253 (256)
T PRK10349 232 KAAHAPFISHP-AEFCHLLVALK 253 (256)
T ss_pred CCCCCccccCH-HHHHHHHHHHh
Confidence 99998775443 46777777664
No 88
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.58 E-value=9.9e-13 Score=134.77 Aligned_cols=344 Identities=15% Similarity=0.080 Sum_probs=217.7
Q ss_pred cCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEE
Q 003363 91 NISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLV 170 (826)
Q Consensus 91 ~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~ 170 (826)
.+.+-.+-...|-.||||+.|||+.-... +......++.++ ..+++.+++|.-+- .-..-.-|+|||+-|++
T Consensus 73 ritS~lGVvnn~kf~pdGrkvaf~rv~~~--ss~~taDly~v~--~e~Ge~kRiTyfGr----~fT~VaG~~~dg~iiV~ 144 (668)
T COG4946 73 RITSGLGVVNNPKFSPDGRKVAFSRVMLG--SSLQTADLYVVP--SEDGEAKRITYFGR----RFTRVAGWIPDGEIIVS 144 (668)
T ss_pred EEecccceeccccCCCCCcEEEEEEEEec--CCCccccEEEEe--CCCCcEEEEEEecc----ccceeeccCCCCCEEEE
Confidence 34444555667778999999999654332 223445677755 57778888886541 12344679999998876
Q ss_pred EecC--------------C--------------------------------------CCCC-eEEEEecCC-ceeEEEec
Q 003363 171 VRNP--------------E--------------------------------------NESP-IQFELWSQS-QLEKEFHV 196 (826)
Q Consensus 171 ~~~~--------------~--------------------------------------~~~~-~~~~i~~~~-~~~~~~~~ 196 (826)
...- + ++.. .+|.-.++| ..++.+++
T Consensus 145 TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl 224 (668)
T COG4946 145 TDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDL 224 (668)
T ss_pred eccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeec
Confidence 4310 0 0111 111111333 45555555
Q ss_pred CCCcc------------------ccccCC---C-------cc---cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCC
Q 003363 197 PQTVH------------------GSVYAD---G-------WF---EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 245 (826)
Q Consensus 197 ~~~~~------------------g~v~~~---~-------~~---~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~ 245 (826)
+..+. |.+|.- + -| ..=.-+.|||+|+|..... ...++.......+
T Consensus 225 ~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~Gd---IylydP~td~lek 301 (668)
T COG4946 225 DGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGD---IYLYDPETDSLEK 301 (668)
T ss_pred CCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCc---EEEeCCCcCccee
Confidence 43321 222321 1 01 1224789999999975322 0111111111111
Q ss_pred CC--------ccCCCCCCcce----eecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 246 SD--------KDCNSWKGQGD----WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 246 ~~--------~~~~~~~~~~~----~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
.+ ++......... |..--|+.++...+.+.|+++...|-+.++ .....+....++-|++. +
T Consensus 302 ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv---~~~~~VrY~r~~~~~e~----~ 374 (668)
T COG4946 302 LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQV---GKKGGVRYRRIQVDPEG----D 374 (668)
T ss_pred eecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEc---CCCCceEEEEEccCCcc----e
Confidence 11 11111111111 333336777777889999999988888887 34445777788888887 7
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
+...++.+ .|-++|. .+++.+++....+.+.....|||||+++..- +
T Consensus 375 vigt~dgD--------------~l~iyd~-----------------~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-d- 421 (668)
T COG4946 375 VIGTNDGD--------------KLGIYDK-----------------DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-D- 421 (668)
T ss_pred EEeccCCc--------------eEEEEec-----------------CCceEEEeeCCccceEEEEEcCCCcEEEEEc-C-
Confidence 77664332 5778888 8899999999999999999999999876433 2
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC-CeEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SSQVIIS 472 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~l~~ 472 (826)
..+||++|+++|..+.+.....+++ ..+.|+|++++|.++--.+ -.+.|-.
T Consensus 422 ---------r~el~vididngnv~~idkS~~~lI-------------------tdf~~~~nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 422 ---------RFELWVIDIDNGNVRLIDKSEYGLI-------------------TDFDWHPNSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred ---------ceEEEEEEecCCCeeEeccccccee-------------------EEEEEcCCceeEEEecCcceeeeeEEE
Confidence 3689999999988765554443333 3678999999888776533 3557888
Q ss_pred EECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCC
Q 003363 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 513 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~ 513 (826)
.|++++++-.+|.+...-..++|++|++++++.+...-.|.
T Consensus 474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs 514 (668)
T COG4946 474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPS 514 (668)
T ss_pred EecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCCC
Confidence 89999999999887664445799999999999987665554
No 89
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.57 E-value=4.2e-14 Score=148.85 Aligned_cols=227 Identities=17% Similarity=0.174 Sum_probs=131.9
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccc-hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcch
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~ 651 (826)
|.++.|+++.|+ .+++.|+||++-| ..+. ...+ .....+|+.+|++++++|.+|.|. +....+..+ .
T Consensus 174 g~~I~g~LhlP~---~~~p~P~VIv~gG-lDs~-qeD~~~l~~~~l~~rGiA~LtvDmPG~G~---s~~~~l~~D----~ 241 (411)
T PF06500_consen 174 GKTIPGYLHLPS---GEKPYPTVIVCGG-LDSL-QEDLYRLFRDYLAPRGIAMLTVDMPGQGE---SPKWPLTQD----S 241 (411)
T ss_dssp TCEEEEEEEESS---SSS-EEEEEEE---TTS--GGGGHHHHHCCCHHCT-EEEEE--TTSGG---GTTT-S-S-----C
T ss_pred CcEEEEEEEcCC---CCCCCCEEEEeCC-cchh-HHHHHHHHHHHHHhCCCEEEEEccCCCcc---cccCCCCcC----H
Confidence 377999999998 5788998887755 3322 3333 334457899999999999999543 321111111 1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccch-hhhc-cCCCCCCchhhhhccCc
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-ALMV-GTTDIPDWCYVESYGSK 729 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~-~~~~-~~~~~~~~~~~~~~~~~ 729 (826)
-.-..++++||.+.+.+|.+||+++|.|+||+.+..+|..++++++++|+.+|++.- ..-. .....| ..+...+..
T Consensus 242 ~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~~~P-~my~d~LA~- 319 (411)
T PF06500_consen 242 SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQRVP-DMYLDVLAS- 319 (411)
T ss_dssp CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHTTS--HHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHhcCC-HHHHHHHHH-
Confidence 123457889999999999999999999999999999998888999999999886432 1100 001111 112211111
Q ss_pred CCccCCCC-CChhh-HHHHhhcCccc--cc--CCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCC-C
Q 003363 730 GKDSFTES-PSVED-LTRFHSKSPIS--HI--SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV-H 802 (826)
Q Consensus 730 ~~~~~~~~-~~~~~-~~~~~~~sp~~--~~--~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~-H 802 (826)
++... ...+. ...+...|-.. .+ ++..+|+|.+.|++|.++|.++.+.++. .+.+-+...++... |
T Consensus 320 ---rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~----~s~~gk~~~~~~~~~~ 392 (411)
T PF06500_consen 320 ---RLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAE----SSTDGKALRIPSKPLH 392 (411)
T ss_dssp ---HCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHH----TBTT-EEEEE-SSSHH
T ss_pred ---HhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHh----cCCCCceeecCCCccc
Confidence 11111 11222 22334444433 23 6677999999999999999999755543 33345666666544 5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHc
Q 003363 803 GIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 803 ~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
.- -...+..+.+||++.|
T Consensus 393 ~g-----y~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 393 MG-----YPQALDEIYKWLEDKL 410 (411)
T ss_dssp HH-----HHHHHHHHHHHHHHHH
T ss_pred cc-----hHHHHHHHHHHHHHhc
Confidence 32 2367788999999875
No 90
>PLN02872 triacylglycerol lipase
Probab=99.57 E-value=3.3e-14 Score=153.94 Aligned_cols=248 Identities=18% Similarity=0.196 Sum_probs=148.7
Q ss_pred cCCCeeEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCCcc----chHHHHHHHHCCcEEEEECCCCCCC-CchhhhhcC
Q 003363 570 KGAQKPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLSS----YSKSLAFLSSVGYSLLIVNYRGSLG-FGEEALQSL 643 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~-~~~~~~P~vv~~HGg~~~~~~~~----~~~~~~~la~~G~~Vl~~d~rG~~g-~G~~~~~~~ 643 (826)
..||..+....+.+... ....+.|+|+++||...+..... ....+..|+++||.|+++|.||.+. +|.......
T Consensus 51 T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh~~~~~~ 130 (395)
T PLN02872 51 TKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGHVTLSEK 130 (395)
T ss_pred CCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCCCCCCcc
Confidence 34555565555543221 12234688999999664432211 1234456889999999999999642 232211111
Q ss_pred CC-----CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccchh------
Q 003363 644 PG-----KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLA------ 709 (826)
Q Consensus 644 ~~-----~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~------ 709 (826)
.. .+......|+.++++++.+.. .+++.++|||+||.+++.++ .+|+ +++++++.+|+..+.
T Consensus 131 ~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~~~~~~~~~ 206 (395)
T PLN02872 131 DKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISYLDHVTAPL 206 (395)
T ss_pred chhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhhhccCCCHH
Confidence 11 111222479999999998753 36899999999999998555 5676 577777777754220
Q ss_pred ----------hh---ccCCCC-C-Cc---------h---------hhhhccC----------------------------
Q 003363 710 ----------LM---VGTTDI-P-DW---------C---------YVESYGS---------------------------- 728 (826)
Q Consensus 710 ----------~~---~~~~~~-~-~~---------~---------~~~~~~~---------------------------- 728 (826)
.+ .+.... + .. | .....|.
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~~~pagtS~k~~~H~ 286 (395)
T PLN02872 207 VLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLEYEPHPSSVKNLRHL 286 (395)
T ss_pred HHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHhcCCCcchHHHHHHH
Confidence 00 010000 0 00 0 0000000
Q ss_pred ------cCCccCCCCCChhhHHHHhhcCc-ccccCCC--CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 729 ------KGKDSFTESPSVEDLTRFHSKSP-ISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 729 ------~~~~~~~~~~~~~~~~~~~~~sp-~~~~~~i--~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
...+.|.... .++...|....| ...+.++ ++|+++++|++|..+++..+.++.+.+... .+++.+++
T Consensus 287 ~Q~~~s~~f~~yDyg~-~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~~---~~l~~l~~ 362 (395)
T PLN02872 287 FQMIRKGTFAHYDYGI-FKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPSK---PELLYLEN 362 (395)
T ss_pred HHHHhcCCcccCCCCc-hhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCCc---cEEEEcCC
Confidence 0011111111 122333333333 4457787 579999999999999999998888888642 57888999
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHHHHHc
Q 003363 800 DVHG--IERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 800 ~~H~--~~~~~~~~~~~~~i~~w~~~~l 825 (826)
.+|. +...+...++++.|++|+++++
T Consensus 363 ~gH~dfi~~~eape~V~~~Il~fL~~~~ 390 (395)
T PLN02872 363 YGHIDFLLSTSAKEDVYNHMIQFFRSLG 390 (395)
T ss_pred CCCHHHHhCcchHHHHHHHHHHHHHHhh
Confidence 9997 4456667789999999999875
No 91
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=1.2e-13 Score=137.92 Aligned_cols=326 Identities=15% Similarity=0.150 Sum_probs=185.0
Q ss_pred cccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEec
Q 003363 94 SIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRN 173 (826)
Q Consensus 94 ~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~ 173 (826)
.=..+.+.-..||||++++ +++.+..+.+|++++... ........ .-+..++|||||++||..+.
T Consensus 113 GH~e~Vl~~~fsp~g~~l~---------tGsGD~TvR~WD~~TeTp-~~t~KgH~-----~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLV---------TGSGDTTVRLWDLDTETP-LFTCKGHK-----NWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred CCCCcEEEEEecCCCceEE---------ecCCCceEEeeccCCCCc-ceeecCCc-----cEEEEEEECCCcchhhcccc
Confidence 3334555555667776654 445667788888765422 11111222 45899999999999998655
Q ss_pred CCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceee-----cCCCCeEEEEeecCCCCCCCccCCCCCCCCCCc
Q 003363 174 PENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISW-----NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDK 248 (826)
Q Consensus 174 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~w-----SPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (826)
++ -+.+|+...-.++...-.+...+| .+++| .|+.++||..+.++..+ .|+...+.......
T Consensus 178 dg-----~I~lwdpktg~~~g~~l~gH~K~I------t~Lawep~hl~p~~r~las~skDg~vr--IWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 178 DG-----SIRLWDPKTGQQIGRALRGHKKWI------TALAWEPLHLVPPCRRLASSSKDGSVR--IWDTKLGTCVRTLS 244 (480)
T ss_pred CC-----eEEEecCCCCCcccccccCcccce------eEEeecccccCCCccceecccCCCCEE--EEEccCceEEEEec
Confidence 43 577885333233332222332223 56665 56788888888777655 33322222222222
Q ss_pred cCCCCCCcceeecCCCccCCCccCceEEEEEccCCce-EeccCCCCCC---------ccceEEEeeCCCCCccEEEEEee
Q 003363 249 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSL---------SVGQVVWAPLNEGLHQYLVFVGW 318 (826)
Q Consensus 249 ~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~---------~~~~~~wSPDg~~~~~~lvf~~~ 318 (826)
.+..-+.-..|..+ |-.|++..+..|.+|+...|.. +.++|....+ -...-+|-|-|++ .- ..
T Consensus 245 gHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~----~~--~~ 317 (480)
T KOG0271|consen 245 GHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK----PK--SF 317 (480)
T ss_pred cCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccccc----CC--Ch
Confidence 33333333334323 4556777889999999887764 3343222211 1112244455554 11 00
Q ss_pred cCccee-------------eeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCE
Q 003363 319 SSETRK-------------LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 385 (826)
Q Consensus 319 ~~~~~~-------------~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~ 385 (826)
+...++ ..+.-+ ..+..+|.++... ....+.+++.+..-+....|||||++
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSg-sDd~tlflW~p~~---------------~kkpi~rmtgHq~lVn~V~fSPd~r~ 381 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSG-SDDFTLFLWNPFK---------------SKKPITRMTGHQALVNHVSFSPDGRY 381 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEe-cCCceEEEecccc---------------cccchhhhhchhhheeeEEECCCccE
Confidence 000000 000001 1234788887521 33456788998888999999999999
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (826)
||-.|-+. .+.+||-.+|+-.....+. -..++.++||.|.+ |+++.+.+
T Consensus 382 IASaSFDk-----------SVkLW~g~tGk~lasfRGH-------------------v~~VYqvawsaDsR-LlVS~SkD 430 (480)
T KOG0271|consen 382 IASASFDK-----------SVKLWDGRTGKFLASFRGH-------------------VAAVYQVAWSADSR-LLVSGSKD 430 (480)
T ss_pred EEEeeccc-----------ceeeeeCCCcchhhhhhhc-------------------cceeEEEEeccCcc-EEEEcCCC
Confidence 99887653 4778887776653222111 12345789999987 66776666
Q ss_pred CeEEEEEEECCCCcEEEecCC-CCCeeeEEEeecCCEEE
Q 003363 466 SSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNII 503 (826)
Q Consensus 466 ~~~~l~~vdl~tg~~~~lt~~-~~~~~~~~~s~dg~~l~ 503 (826)
.+..+|.+ .++++..=.++ ...+....|+|||..+.
T Consensus 431 sTLKvw~V--~tkKl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 431 STLKVWDV--RTKKLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred ceEEEEEe--eeeeecccCCCCCceEEEEEecCCCceee
Confidence 66666655 46666654443 33566678999998654
No 92
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.56 E-value=8.9e-14 Score=150.98 Aligned_cols=236 Identities=13% Similarity=0.157 Sum_probs=141.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCC---CCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHS---VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~---~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~ 652 (826)
+..+.|.|... ...+.| ||++||-... .....+...+.+|+++||.|+++|+||. |.+.. .........
T Consensus 48 ~~l~~~~~~~~-~~~~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~---g~s~~---~~~~~d~~~ 119 (350)
T TIGR01836 48 VVLYRYTPVKD-NTHKTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYP---DRADR---YLTLDDYIN 119 (350)
T ss_pred EEEEEecCCCC-cCCCCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCC---CHHHh---cCCHHHHHH
Confidence 44556666421 122334 8888983211 1122345688899999999999999984 33211 111112223
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC-----------------C
Q 003363 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----------------T 715 (826)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-----------------~ 715 (826)
+++.++++++.++. +.+++.++|||+||.+++.++..+|+.++++|+.++.++....... .
T Consensus 120 ~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (350)
T TIGR01836 120 GYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMG 197 (350)
T ss_pred HHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHHhcC
Confidence 45788899998873 4578999999999999999999999999999999987764321100 0
Q ss_pred CCCCchhhhh-------------c-------cCc-CCccC-------CCC-CC-hhhH----HHHhhcCc----------
Q 003363 716 DIPDWCYVES-------------Y-------GSK-GKDSF-------TES-PS-VEDL----TRFHSKSP---------- 751 (826)
Q Consensus 716 ~~~~~~~~~~-------------~-------~~~-~~~~~-------~~~-~~-~~~~----~~~~~~sp---------- 751 (826)
.++.+..... + ... ....+ ... +. .... +.+...+.
T Consensus 198 ~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~ 277 (350)
T TIGR01836 198 NIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGG 277 (350)
T ss_pred CCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECC
Confidence 0111100000 0 000 00000 000 00 0000 00101111
Q ss_pred -ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC-C-CCCCHHHHHHHHHHHHHHH
Q 003363 752 -ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI-E-RPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 752 -~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~-~-~~~~~~~~~~~i~~w~~~~ 824 (826)
...+.++++|+|+++|++|..+|+..+..+++.+.. .+++++++++ ||.. . .++...+++..+.+||.++
T Consensus 278 ~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~--~~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 278 RKVDLKNIKMPILNIYAERDHLVPPDASKALNDLVSS--EDYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred EEccHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcCC--CCeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHhC
Confidence 113557889999999999999999999988888754 4577888875 5653 3 3334568999999999864
No 93
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.56 E-value=4.3e-15 Score=150.48 Aligned_cols=196 Identities=19% Similarity=0.287 Sum_probs=122.4
Q ss_pred EEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEE
Q 003363 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 674 (826)
Q Consensus 595 vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~ 674 (826)
||++||.+.. ...|...+..| ++||.|+++|+||.+..... . ......+++..+.+..+++. +..+++.
T Consensus 1 vv~~hG~~~~--~~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~---~---~~~~~~~~~~~~~l~~~l~~--~~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGS--SESWDPLAEAL-ARGYRVIAFDLPGHGRSDPP---P---DYSPYSIEDYAEDLAELLDA--LGIKKVI 69 (228)
T ss_dssp EEEE-STTTT--GGGGHHHHHHH-HTTSEEEEEECTTSTTSSSH---S---SGSGGSHHHHHHHHHHHHHH--TTTSSEE
T ss_pred eEEECCCCCC--HHHHHHHHHHH-hCCCEEEEEecCCccccccc---c---ccCCcchhhhhhhhhhcccc--ccccccc
Confidence 7999997765 46788888888 48999999999995443221 1 12233456666666666665 3347899
Q ss_pred EEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc----C---CCCCCch--hhhhccCcCCccCCCCCCh-----
Q 003363 675 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----T---TDIPDWC--YVESYGSKGKDSFTESPSV----- 740 (826)
Q Consensus 675 l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~---~~~~~~~--~~~~~~~~~~~~~~~~~~~----- 740 (826)
++|||+||.+++.++.++|++++++|+.+|......... . .....+. ....+..............
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999875322110 0 0000000 0000000000000000000
Q ss_pred ---hhHHH-----HhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 741 ---EDLTR-----FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 741 ---~~~~~-----~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
+.... ....+....+.++++|+++++|++|..++.+...++.+.+. .++++++|++||.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKLP----NAELVVIPGAGHFLF 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHST----TEEEEEETTSSSTHH
T ss_pred ccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHCC----CCEEEEECCCCCccH
Confidence 00000 11223335567889999999999999998777766666554 489999999999865
No 94
>PRK07581 hypothetical protein; Validated
Probab=99.56 E-value=3.9e-14 Score=153.44 Aligned_cols=224 Identities=14% Similarity=0.080 Sum_probs=128.5
Q ss_pred CCcEEEEEcCCCCCCCCccchHHH---HHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC-----cch-HHHHHHHHHH
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG-----SQD-VNDVLTAIDH 661 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~---~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~-----~~~-~~D~~~~i~~ 661 (826)
+.|+||++||+++.. ..+...+ ..|...+|.|+++|+||.+.+.... .....+. ... .+|+.+....
T Consensus 40 ~~~~vll~~~~~~~~--~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (339)
T PRK07581 40 KDNAILYPTWYSGTH--QDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPS--NTPAPFNAARFPHVTIYDNVRAQHRL 115 (339)
T ss_pred CCCEEEEeCCCCCCc--ccchhhccCCCccCcCceEEEEecCCCCCCCCCCC--CCCCCCCCCCCCceeHHHHHHHHHHH
Confidence 457777777755432 2232222 2565678999999999954432111 0000111 112 3455544444
Q ss_pred HHHcCCCCCCcE-EEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh------------hccCCCCC-Cch------
Q 003363 662 VIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------------MVGTTDIP-DWC------ 721 (826)
Q Consensus 662 l~~~~~~d~~rv-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~------------~~~~~~~~-~~~------ 721 (826)
+.+. +..+++ .|+||||||++++.++.++|++++++|+.++...... +....... .|.
T Consensus 116 l~~~--lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 193 (339)
T PRK07581 116 LTEK--FGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPER 193 (339)
T ss_pred HHHH--hCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHH
Confidence 5554 334784 7999999999999999999999999998865432100 00000000 000
Q ss_pred -------------hhhhccC-cCCcc----------------CCCCCChhhHHH----Hhh----------cCcccccCC
Q 003363 722 -------------YVESYGS-KGKDS----------------FTESPSVEDLTR----FHS----------KSPISHISK 757 (826)
Q Consensus 722 -------------~~~~~~~-~~~~~----------------~~~~~~~~~~~~----~~~----------~sp~~~~~~ 757 (826)
+...+.. ..... ............ +.. .+....+.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~ 273 (339)
T PRK07581 194 GLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGS 273 (339)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhc
Confidence 0000000 00000 000000000000 000 011234667
Q ss_pred CCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC-CCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 758 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 758 i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~-~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+++|+|+++|++|..+|+..++.+.+.+.+ .+++++++ +||.....+.. ++...+.+|+++++
T Consensus 274 I~~PtLvI~G~~D~~~p~~~~~~l~~~ip~----a~l~~i~~~~GH~~~~~~~~-~~~~~~~~~~~~~~ 337 (339)
T PRK07581 274 ITAKTFVMPISTDLYFPPEDCEAEAALIPN----AELRPIESIWGHLAGFGQNP-ADIAFIDAALKELL 337 (339)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEeCCCCCccccccCcH-HHHHHHHHHHHHHH
Confidence 899999999999999999998888777754 68899999 89977655554 77888999998876
No 95
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.55 E-value=8.1e-14 Score=153.38 Aligned_cols=212 Identities=16% Similarity=0.208 Sum_probs=129.8
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
+..|.||++||.+.. ...|......|.. +|.|+++|+||.+.+.. ......+.++.+.+..+++. ++
T Consensus 129 ~~~~~vl~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~g~G~s~~--------~~~~~~~~~~~~~~~~~~~~--~~ 195 (371)
T PRK14875 129 GDGTPVVLIHGFGGD--LNNWLFNHAALAA-GRPVIALDLPGHGASSK--------AVGAGSLDELAAAVLAFLDA--LG 195 (371)
T ss_pred CCCCeEEEECCCCCc--cchHHHHHHHHhc-CCEEEEEcCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHh--cC
Confidence 345789999996654 4466666777755 59999999999544321 11123467777777776665 56
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh--------hccCCCCC---CchhhhhccCc-CCc-----
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--------MVGTTDIP---DWCYVESYGSK-GKD----- 732 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--------~~~~~~~~---~~~~~~~~~~~-~~~----- 732 (826)
..++.|+|||+||.+++.++.++|++++++++.+|...... +....... .+. ...+... ...
T Consensus 196 ~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 274 (371)
T PRK14875 196 IERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVL-ELLFADPALVTRQMVE 274 (371)
T ss_pred CccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHH-HHHhcChhhCCHHHHH
Confidence 67899999999999999999999999999998887532110 00000000 000 0000000 000
Q ss_pred ---cCCCCCC-hhhHHHHh---------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 003363 733 ---SFTESPS-VEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 799 (826)
Q Consensus 733 ---~~~~~~~-~~~~~~~~---------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~ 799 (826)
.+..... ......+. ..+....+.++++|+|+++|++|..+|+.++..+. ..+++.++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~~~ 347 (371)
T PRK14875 275 DLLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVLPG 347 (371)
T ss_pred HHHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEeCC
Confidence 0000000 00000000 01112245678999999999999999988765432 1378889999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 800 DVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 800 ~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+||....... .++...|.+||++
T Consensus 348 ~gH~~~~e~p-~~~~~~i~~fl~~ 370 (371)
T PRK14875 348 AGHMPQMEAA-ADVNRLLAEFLGK 370 (371)
T ss_pred CCCChhhhCH-HHHHHHHHHHhcc
Confidence 9998765544 4677788888865
No 96
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.55 E-value=3.3e-14 Score=138.16 Aligned_cols=176 Identities=19% Similarity=0.143 Sum_probs=126.2
Q ss_pred CCCeeEEEEEEecCCCCCCCCC-cEEEEEcCCCCCCCCccchHHH-------HHHHHCCcEEEEECCCCCCCCchhhhhc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCD-PLIVVLHGGPHSVSLSSYSKSL-------AFLSSVGYSLLIVNYRGSLGFGEEALQS 642 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~-P~vv~~HGg~~~~~~~~~~~~~-------~~la~~G~~Vl~~d~rG~~g~G~~~~~~ 642 (826)
..|.++.+.+|.|+++++++++ |+|||+||++..... ...... ...-+-++-|++|.|--- +...
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~d-n~~~l~sg~gaiawa~pedqcfVlAPQy~~i--f~d~---- 241 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSD-NDKVLSSGIGAIAWAGPEDQCFVLAPQYNPI--FADS---- 241 (387)
T ss_pred ccCceeeEEEecccccCCCCccccEEEEEecCCCCCch-hhhhhhcCccceeeecccCceEEEccccccc--cccc----
Confidence 4578899999999999999998 999999997655322 111111 111234466777765321 1100
Q ss_pred CCCCCCcchHHHHHHHHH-HHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCch
Q 003363 643 LPGKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC 721 (826)
Q Consensus 643 ~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~ 721 (826)
.+.-........+.++ -+.+++.+|.+||.++|.|+||+.++.++.++||.|+|+++++|--+..
T Consensus 242 --e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v------------ 307 (387)
T COG4099 242 --EEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRV------------ 307 (387)
T ss_pred --ccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchh------------
Confidence 0111112444555555 6667888999999999999999999999999999999999888732210
Q ss_pred hhhhccCcCCccCCCCCChhhHHHHhhcCcccccCC-CCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC
Q 003363 722 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 798 (826)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p 798 (826)
..++. -++|+-++|+.+|..+|.++++-+++.|+..+.++++..|.
T Consensus 308 -------------------------------~lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 308 -------------------------------YLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred -------------------------------hhhhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhh
Confidence 11111 24899999999999999999999999999988888877765
No 97
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.55 E-value=2.5e-13 Score=144.77 Aligned_cols=215 Identities=21% Similarity=0.298 Sum_probs=127.6
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.+.||++||++..... ......+...+|.|+++|+|| +|.+... ........+++.+.+..+++. ++.+
T Consensus 27 ~~~lvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G---~G~S~~~---~~~~~~~~~~~~~dl~~l~~~--l~~~ 95 (306)
T TIGR01249 27 GKPVVFLHGGPGSGTD---PGCRRFFDPETYRIVLFDQRG---CGKSTPH---ACLEENTTWDLVADIEKLREK--LGIK 95 (306)
T ss_pred CCEEEEECCCCCCCCC---HHHHhccCccCCEEEEECCCC---CCCCCCC---CCcccCCHHHHHHHHHHHHHH--cCCC
Confidence 3568999998765321 223344556789999999999 4444211 111123456677777777665 3456
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh----hhc--cCC------------CCC-Cc---hhhhhcc--
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA----LMV--GTT------------DIP-DW---CYVESYG-- 727 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~----~~~--~~~------------~~~-~~---~~~~~~~-- 727 (826)
++.++||||||.+++.++.++|++++++|+.++..... ... +.. ..+ .. .+...+.
T Consensus 96 ~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (306)
T TIGR01249 96 NWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGGASMIYPDAWQRFMDSIPENERNEQLVNAYHDR 175 (306)
T ss_pred CEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcchhhhCHHHHHHHhhhCChhhhhccHHHHHHHH
Confidence 89999999999999999999999999988887643210 000 000 000 00 0000000
Q ss_pred --Cc------------------CCccCCC-------CCC-hhhHHHHh-------h-cC----cccccCCC-CCcEEEEE
Q 003363 728 --SK------------------GKDSFTE-------SPS-VEDLTRFH-------S-KS----PISHISKV-KTPTIFLL 766 (826)
Q Consensus 728 --~~------------------~~~~~~~-------~~~-~~~~~~~~-------~-~s----p~~~~~~i-~~PvLii~ 766 (826)
.. ....... .+. ........ . .+ -...+.++ ++|+|++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~ 255 (306)
T TIGR01249 176 LQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLENHYFVNKGFLDVENFILDNISKIRNIPTYIVH 255 (306)
T ss_pred ccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHHHhHHHHhchhcCchHHHHhhhhccCCCeEEEe
Confidence 00 0000000 000 00000000 0 00 11234566 58999999
Q ss_pred eCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 767 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 767 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
|+.|..+|+..+.++++.+.. .++++++++||....+ +....+.+|+..+|
T Consensus 256 g~~D~~~p~~~~~~~~~~~~~----~~~~~~~~~gH~~~~~----~~~~~i~~~~~~~~ 306 (306)
T TIGR01249 256 GRYDLCCPLQSAWALHKAFPE----AELKVTNNAGHSAFDP----NNLAALVHALETYL 306 (306)
T ss_pred cCCCCCCCHHHHHHHHHhCCC----CEEEEECCCCCCCCCh----HHHHHHHHHHHHhC
Confidence 999999999999888888754 6899999999987533 45577888887764
No 98
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.55 E-value=1.8e-13 Score=125.59 Aligned_cols=197 Identities=18% Similarity=0.242 Sum_probs=135.0
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC---CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~ 645 (826)
.+|.-..+++.. .|. .....|+.|.+|--|...+ .......+..|.++||.++.+||||-+++..++
T Consensus 9 i~Gp~G~le~~~-~~~---~~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~f------ 78 (210)
T COG2945 9 INGPAGRLEGRY-EPA---KTPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEF------ 78 (210)
T ss_pred ecCCcccceecc-CCC---CCCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcc------
Confidence 344444566544 444 3567899999987443221 222334566788999999999999987776655
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhh
Q 003363 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 725 (826)
+.|.-+.+|+.++++|+.++. -+.....+.|+|+|+++++.++.+.|+. ...+...|.++..
T Consensus 79 D~GiGE~~Da~aaldW~~~~h-p~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~~~---------------- 140 (210)
T COG2945 79 DNGIGELEDAAAALDWLQARH-PDSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPINAY---------------- 140 (210)
T ss_pred cCCcchHHHHHHHHHHHHhhC-CCchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCCch----------------
Confidence 445567999999999999874 2333357999999999999999988753 3344444443310
Q ss_pred ccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
. ...+....+|.|+++|+.|+++++....+.++. .+.+++++++++|.|.
T Consensus 141 -------------------d------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~~a~HFF~ 190 (210)
T COG2945 141 -------------------D------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQES-----IKITVITIPGADHFFH 190 (210)
T ss_pred -------------------h------hhhccCCCCCceeEecChhhhhcHHHHHHhhcC-----CCCceEEecCCCceec
Confidence 0 012233457999999999999887776666554 4578899999999886
Q ss_pred CCCCHHHHHHHHHHHH-HHHc
Q 003363 806 RPQSDFESFLNIGLWF-KKYC 825 (826)
Q Consensus 806 ~~~~~~~~~~~i~~w~-~~~l 825 (826)
.. .....+.+.+|+ .+.+
T Consensus 191 gK--l~~l~~~i~~~l~~r~l 209 (210)
T COG2945 191 GK--LIELRDTIADFLEDRRL 209 (210)
T ss_pred cc--HHHHHHHHHHHhhcccc
Confidence 43 235667788888 3443
No 99
>PLN02578 hydrolase
Probab=99.55 E-value=1.9e-13 Score=148.61 Aligned_cols=210 Identities=17% Similarity=0.156 Sum_probs=124.2
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc-hHHHHHHHHHHHHHcCCCCCC
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ-DVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~-~~~D~~~~i~~l~~~~~~d~~ 671 (826)
|.||++||.+.. ...|...+..|+ .+|.|+++|+||.+.+.... ..+... ..+|+.+.++.+ ..+
T Consensus 87 ~~vvliHG~~~~--~~~w~~~~~~l~-~~~~v~~~D~~G~G~S~~~~-----~~~~~~~~a~~l~~~i~~~------~~~ 152 (354)
T PLN02578 87 LPIVLIHGFGAS--AFHWRYNIPELA-KKYKVYALDLLGFGWSDKAL-----IEYDAMVWRDQVADFVKEV------VKE 152 (354)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCCCCCCCCcc-----cccCHHHHHHHHHHHHHHh------ccC
Confidence 568999996554 446666677775 46999999999955443221 111111 123444444433 246
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC--------CCCCCchhhhhc---------------cC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--------TDIPDWCYVESY---------------GS 728 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~--------~~~~~~~~~~~~---------------~~ 728 (826)
++.++|||+||++++.++.++|++++++|++++...+...... .....+...... ..
T Consensus 153 ~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T PLN02578 153 PAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAK 232 (354)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999988764321100000 000000000000 00
Q ss_pred --c----C-CccCCC-----------------CCC-hhh-HH---HHh----hcCcccccCCCCCcEEEEEeCCCCCCCc
Q 003363 729 --K----G-KDSFTE-----------------SPS-VED-LT---RFH----SKSPISHISKVKTPTIFLLGAQDLRVPV 775 (826)
Q Consensus 729 --~----~-~~~~~~-----------------~~~-~~~-~~---~~~----~~sp~~~~~~i~~PvLii~G~~D~~vp~ 775 (826)
. . ...+.. .+. .+. .. .+. .......+.++++|+|+++|++|..+|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~ 312 (354)
T PLN02578 233 QPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGP 312 (354)
T ss_pred CHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCH
Confidence 0 0 000000 000 000 00 000 1112234677899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 776 SNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 776 ~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
..+.++.+.+.+ .+++++ ++||....... .++.+.|.+|++
T Consensus 313 ~~~~~l~~~~p~----a~l~~i-~~GH~~~~e~p-~~~~~~I~~fl~ 353 (354)
T PLN02578 313 AKAEKIKAFYPD----TTLVNL-QAGHCPHDEVP-EQVNKALLEWLS 353 (354)
T ss_pred HHHHHHHHhCCC----CEEEEe-CCCCCccccCH-HHHHHHHHHHHh
Confidence 998888777654 577777 58998765544 478889999985
No 100
>PRK06489 hypothetical protein; Provisional
Probab=99.55 E-value=7.7e-14 Score=152.08 Aligned_cols=221 Identities=19% Similarity=0.240 Sum_probs=127.0
Q ss_pred CcEEEEEcCCCCCCCCccch--HHHHHH-------HHCCcEEEEECCCCCCCCchhhhhcCC--CCCCcchHHHHHHHH-
Q 003363 592 DPLIVVLHGGPHSVSLSSYS--KSLAFL-------SSVGYSLLIVNYRGSLGFGEEALQSLP--GKVGSQDVNDVLTAI- 659 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~--~~~~~l-------a~~G~~Vl~~d~rG~~g~G~~~~~~~~--~~~~~~~~~D~~~~i- 659 (826)
.|.||++||++.+. ..|. .....| ..++|.|+++|+||.| .+...... .......++++.+.+
T Consensus 69 gpplvllHG~~~~~--~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG---~S~~p~~~~~~~~~~~~~~~~a~~~~ 143 (360)
T PRK06489 69 DNAVLVLHGTGGSG--KSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHG---KSSKPSDGLRAAFPRYDYDDMVEAQY 143 (360)
T ss_pred CCeEEEeCCCCCch--hhhccchhHHHhcCCCCcccccCCEEEEeCCCCCC---CCCCCCcCCCCCCCcccHHHHHHHHH
Confidence 57899999977542 2232 222222 2578999999999954 33211000 001123456665443
Q ss_pred HHHHHcCCCCCCcEE-EEEecchHHHHHHHHHhCCCceeEEEecCCccch--------hhh-c-cCCCCCCc--------
Q 003363 660 DHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL--------ALM-V-GTTDIPDW-------- 720 (826)
Q Consensus 660 ~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~--------~~~-~-~~~~~~~~-------- 720 (826)
..+.+. ++.+++. |+||||||++++.++.++|++++++|++++.... ... . .......|
T Consensus 144 ~~l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (360)
T PRK06489 144 RLVTEG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQ 221 (360)
T ss_pred HHHHHh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 334444 3346775 8999999999999999999999999988764210 000 0 00000000
Q ss_pred --h------hhh--------hccC-cCC----c-c----CC--CCCChhhH----HHHhhcCcccccCCCCCcEEEEEeC
Q 003363 721 --C------YVE--------SYGS-KGK----D-S----FT--ESPSVEDL----TRFHSKSPISHISKVKTPTIFLLGA 768 (826)
Q Consensus 721 --~------~~~--------~~~~-~~~----~-~----~~--~~~~~~~~----~~~~~~sp~~~~~~i~~PvLii~G~ 768 (826)
. ... .+.. ... . . +. ........ ......+....+.+|++|+|+++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~ 301 (360)
T PRK06489 222 PPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSA 301 (360)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecC
Confidence 0 000 0000 000 0 0 00 00000000 0001122334567899999999999
Q ss_pred CCCCCCcHHH--HHHHHHHHhCCCCEEEEEeCCC----CCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 769 QDLRVPVSNG--LQYARALREKGVETKVIVFPND----VHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 769 ~D~~vp~~~~--~~~~~~l~~~g~~~~~~~~p~~----~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+|..+|++.+ +.+.+.+.+ .+++++|++ ||... +....+.+.+.+||+++-
T Consensus 302 ~D~~~p~~~~~~~~la~~ip~----a~l~~i~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 302 DDERNPPETGVMEAALKRVKH----GRLVLIPASPETRGHGTT--GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred CCcccChhhHHHHHHHHhCcC----CeEEEECCCCCCCCcccc--cCHHHHHHHHHHHHHhcc
Confidence 9999998876 566666654 689999996 99874 456688889999998753
No 101
>PLN00021 chlorophyllase
Probab=99.55 E-value=4.4e-13 Score=140.81 Aligned_cols=182 Identities=20% Similarity=0.222 Sum_probs=124.4
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHH
Q 003363 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (826)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~ 653 (826)
.++.+.++.|. ..+++|+||++||+... ...|...+..|+++||.|+++|++|..+. ....+++
T Consensus 37 ~~~p~~v~~P~---~~g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~i~ 100 (313)
T PLN00021 37 PPKPLLVATPS---EAGTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLAGP-----------DGTDEIK 100 (313)
T ss_pred CCceEEEEeCC---CCCCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcCCC-----------CchhhHH
Confidence 45778899997 46789999999997654 44677788899999999999999873211 0122456
Q ss_pred HHHHHHHHHHHc--------CCCCCCcEEEEEecchHHHHHHHHHhCCC-----ceeEEEecCCccchhhhccCCCCCCc
Q 003363 654 DVLTAIDHVIDM--------GLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDW 720 (826)
Q Consensus 654 D~~~~i~~l~~~--------~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~ 720 (826)
|..++++|+.+. ..+|.++++|+|||+||.+++.++..+++ .++++|...|+....... ..
T Consensus 101 d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~-~~----- 174 (313)
T PLN00021 101 DAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK-QT----- 174 (313)
T ss_pred HHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc-CC-----
Confidence 677777777652 23677899999999999999999998874 578888888875421100 00
Q ss_pred hhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCC-----C----CCcHH-HHHHHHHHHhCCC
Q 003363 721 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-----R----VPVSN-GLQYARALREKGV 790 (826)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~-----~----vp~~~-~~~~~~~l~~~g~ 790 (826)
.+.. ....+ ..-++..|+|++++..|. . .|... -.+++++.+.
T Consensus 175 ----------------~p~i------l~~~~--~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~--- 227 (313)
T PLN00021 175 ----------------PPPV------LTYAP--HSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKA--- 227 (313)
T ss_pred ----------------CCcc------cccCc--ccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCC---
Confidence 0000 00011 112367999999999763 2 22332 3567766653
Q ss_pred CEEEEEeCCCCCCC
Q 003363 791 ETKVIVFPNDVHGI 804 (826)
Q Consensus 791 ~~~~~~~p~~~H~~ 804 (826)
+..+.+.++++|.-
T Consensus 228 ~~~~~~~~~~gH~~ 241 (313)
T PLN00021 228 PAVHFVAKDYGHMD 241 (313)
T ss_pred CeeeeeecCCCcce
Confidence 68888999999963
No 102
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.54 E-value=1.7e-13 Score=148.99 Aligned_cols=244 Identities=16% Similarity=0.190 Sum_probs=139.8
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc---------cchHHH---HHHHHCCcEEEEECCCCC-CCC-chh
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---------SYSKSL---AFLSSVGYSLLIVNYRGS-LGF-GEE 638 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~---------~~~~~~---~~la~~G~~Vl~~d~rG~-~g~-G~~ 638 (826)
|..+++..+-+++ ....|.||++||...+.... .|...+ ..|...+|.|+++|+||. +|. +.+
T Consensus 15 ~~~~~y~~~g~~~---~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~ 91 (351)
T TIGR01392 15 DVRVAYETYGTLN---AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPS 91 (351)
T ss_pred CceEEEEeccccC---CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCC
Confidence 4556665554431 12347899999965532111 233332 255578999999999993 222 211
Q ss_pred hhhc----CCCCCCcchHHHHHHHHHHHHHcCCCCCCc-EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh---
Q 003363 639 ALQS----LPGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--- 710 (826)
Q Consensus 639 ~~~~----~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--- 710 (826)
.... ...+.....++|+.+.+..+++.- ..++ +.|+||||||.+++.++.++|++++++|+.++......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 169 (351)
T TIGR01392 92 SINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAWCI 169 (351)
T ss_pred CCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHHHH
Confidence 1000 000112345777777777776653 4467 99999999999999999999999999999887542110
Q ss_pred -h-------cc-CCC-----C-----CCchhh--hh-----ccC-c-CCccCCCC------C--------ChhhH-----
Q 003363 711 -M-------VG-TTD-----I-----PDWCYV--ES-----YGS-K-GKDSFTES------P--------SVEDL----- 743 (826)
Q Consensus 711 -~-------~~-~~~-----~-----~~~~~~--~~-----~~~-~-~~~~~~~~------~--------~~~~~----- 743 (826)
. .. ... . +.+.+. .. +.. . ....+... + ..+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (351)
T TIGR01392 170 AFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRYQG 249 (351)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHHHH
Confidence 0 00 000 0 000000 00 000 0 00000000 0 00000
Q ss_pred ----------------HHHhhcCc-------ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEE-eCC
Q 003363 744 ----------------TRFHSKSP-------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV-FPN 799 (826)
Q Consensus 744 ----------------~~~~~~sp-------~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~-~p~ 799 (826)
..+...+. ...+.+|++|+|+|+|++|..+|+..++++.+.+.+....++++. +++
T Consensus 250 ~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~ 329 (351)
T TIGR01392 250 DKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESP 329 (351)
T ss_pred HHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCC
Confidence 01111111 234668899999999999999999999999999987544444444 468
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH
Q 003363 800 DVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 800 ~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+||.....+ ..++.+.+.+||+
T Consensus 330 ~GH~~~le~-p~~~~~~l~~FL~ 351 (351)
T TIGR01392 330 YGHDAFLVE-TDQVEELIRGFLR 351 (351)
T ss_pred CCcchhhcC-HHHHHHHHHHHhC
Confidence 999876544 4477778888864
No 103
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.53 E-value=2.8e-13 Score=148.40 Aligned_cols=231 Identities=15% Similarity=0.188 Sum_probs=138.1
Q ss_pred CCcEEEEEcCCCCCCCCc-----------cchHHH---HHHHHCCcEEEEECCCCC-CCC-chhhhhc---CC--CCCCc
Q 003363 591 CDPLIVVLHGGPHSVSLS-----------SYSKSL---AFLSSVGYSLLIVNYRGS-LGF-GEEALQS---LP--GKVGS 649 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~-----------~~~~~~---~~la~~G~~Vl~~d~rG~-~g~-G~~~~~~---~~--~~~~~ 649 (826)
..|.||++||.+.+.... .|...+ ..|...+|.|+++|++|. ++. +.+.... .+ .....
T Consensus 47 ~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~ 126 (379)
T PRK00175 47 RSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPV 126 (379)
T ss_pred CCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCc
Confidence 358999999976553210 133332 133356899999999983 222 1111000 00 01123
Q ss_pred chHHHHHHHHHHHHHcCCCCCCc-EEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh---------ccCCCCCC
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------VGTTDIPD 719 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~---------~~~~~~~~ 719 (826)
..++++.+.+..+++. ++.++ +.++||||||.+++.++.++|++++++|++++....... ......+.
T Consensus 127 ~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~i~~~~~ 204 (379)
T PRK00175 127 ITIRDWVRAQARLLDA--LGITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSAQNIAFNEVARQAILADPD 204 (379)
T ss_pred CCHHHHHHHHHHHHHH--hCCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCHHHHHHHHHHHHHHHhCCC
Confidence 4577777777777766 34467 589999999999999999999999999998864321100 00000000
Q ss_pred ch-------------------------------hhhhccCcCCccC-----CCCCChhhH--------------------
Q 003363 720 WC-------------------------------YVESYGSKGKDSF-----TESPSVEDL-------------------- 743 (826)
Q Consensus 720 ~~-------------------------------~~~~~~~~~~~~~-----~~~~~~~~~-------------------- 743 (826)
|. +...+........ ......+..
T Consensus 205 ~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~ 284 (379)
T PRK00175 205 WHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLRYQGDKFVERFDANSYLYL 284 (379)
T ss_pred CCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHHHHHHHHhhccCchHHHHH
Confidence 00 0000100000000 000000000
Q ss_pred -HHHhhcC--------cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC-CCCCCCCCCCCHHHH
Q 003363 744 -TRFHSKS--------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP-NDVHGIERPQSDFES 813 (826)
Q Consensus 744 -~~~~~~s--------p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p-~~~H~~~~~~~~~~~ 813 (826)
..+...+ -...+.+|++|+|+|+|+.|..+|++.++++.+.+...+..+++++++ ++||.....+.. ++
T Consensus 285 ~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~-~~ 363 (379)
T PRK00175 285 TRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFLLDDP-RY 363 (379)
T ss_pred HHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHH-HH
Confidence 0000111 123457889999999999999999999999999998877777888885 899987655544 78
Q ss_pred HHHHHHHHHHH
Q 003363 814 FLNIGLWFKKY 824 (826)
Q Consensus 814 ~~~i~~w~~~~ 824 (826)
...+.+||.+.
T Consensus 364 ~~~L~~FL~~~ 374 (379)
T PRK00175 364 GRLVRAFLERA 374 (379)
T ss_pred HHHHHHHHHhh
Confidence 89999999864
No 104
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.53 E-value=3.9e-13 Score=135.58 Aligned_cols=221 Identities=18% Similarity=0.275 Sum_probs=133.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
...+.+|++||.+.+ ...|-.....|+. ...|.++|..| +|++.+.....+.... ...+.+.++.-... ..
T Consensus 88 ~~~~plVliHGyGAg--~g~f~~Nf~~La~-~~~vyaiDllG---~G~SSRP~F~~d~~~~-e~~fvesiE~WR~~--~~ 158 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAG--LGLFFRNFDDLAK-IRNVYAIDLLG---FGRSSRPKFSIDPTTA-EKEFVESIEQWRKK--MG 158 (365)
T ss_pred cCCCcEEEEeccchh--HHHHHHhhhhhhh-cCceEEecccC---CCCCCCCCCCCCcccc-hHHHHHHHHHHHHH--cC
Confidence 445668899995543 4456667777777 79999999999 7776655554443222 33444444433333 22
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh----ccCCCCCCchh-----------------hhhccC
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM----VGTTDIPDWCY-----------------VESYGS 728 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~----~~~~~~~~~~~-----------------~~~~~~ 728 (826)
.+++.|+|||+|||+++.+|.+||++++.+|+.+|.--.... ......+.|.. +..+|.
T Consensus 159 L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp 238 (365)
T KOG4409|consen 159 LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGP 238 (365)
T ss_pred CcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccch
Confidence 468999999999999999999999999999999986322211 00111112210 001111
Q ss_pred cCCc-----cCCCCC---ChhhHHHHh-----------------------hcCc-ccccCCCC--CcEEEEEeCCCCCCC
Q 003363 729 KGKD-----SFTESP---SVEDLTRFH-----------------------SKSP-ISHISKVK--TPTIFLLGAQDLRVP 774 (826)
Q Consensus 729 ~~~~-----~~~~~~---~~~~~~~~~-----------------------~~sp-~~~~~~i~--~PvLii~G~~D~~vp 774 (826)
.... ++...+ ..+....|. ...| +..+..++ +|+++|+|++|-+ .
T Consensus 239 ~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWm-D 317 (365)
T KOG4409|consen 239 KLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWM-D 317 (365)
T ss_pred HHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCcccc-c
Confidence 0000 011111 111101110 1122 23345555 9999999999964 5
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 775 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 775 ~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
...+.++.+.+. ...++.+++|++||.....+.. .+.+.+..++++
T Consensus 318 ~~~g~~~~~~~~--~~~~~~~~v~~aGHhvylDnp~-~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 318 KNAGLEVTKSLM--KEYVEIIIVPGAGHHVYLDNPE-FFNQIVLEECDK 363 (365)
T ss_pred chhHHHHHHHhh--cccceEEEecCCCceeecCCHH-HHHHHHHHHHhc
Confidence 566677766653 2458999999999987655543 677777777765
No 105
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.52 E-value=1.8e-13 Score=134.55 Aligned_cols=191 Identities=20% Similarity=0.169 Sum_probs=119.6
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCCCCCCCch--hhhhcCCCCCCcch
Q 003363 577 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGE--EALQSLPGKVGSQD 651 (826)
Q Consensus 577 ~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~rG~~g~G~--~~~~~~~~~~~~~~ 651 (826)
.+.+|.|++. +..+.|+||++||..... ..+.. +.+...++||+|+.|+-........ .|.. .....+..+
T Consensus 2 ~Y~lYvP~~~-~~~~~PLVv~LHG~~~~a--~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~~d 77 (220)
T PF10503_consen 2 SYRLYVPPGA-PRGPVPLVVVLHGCGQSA--EDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGGGD 77 (220)
T ss_pred cEEEecCCCC-CCCCCCEEEEeCCCCCCH--HHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCccc
Confidence 4578899864 335789999999976542 22222 2233346899999998543211112 2211 112233446
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCC
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (826)
...+.+.++++.++..+|++||.+.|+|.||.|+..+++.+||+|.++...+++.--... +.... ...+..
T Consensus 78 ~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~----~~~~a--~~~m~~--- 148 (220)
T PF10503_consen 78 VAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAA----SGASA--LSAMRS--- 148 (220)
T ss_pred hhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccccccccc----CcccH--HHHhhC---
Confidence 777888899999998899999999999999999999999999999999888775321100 00000 000000
Q ss_pred ccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHh
Q 003363 732 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 787 (826)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~ 787 (826)
...+............. .. -..|++++||+.|..|.+.++.++.+.+..
T Consensus 149 ---g~~~~p~~~~~a~~~~g--~~--~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~ 197 (220)
T PF10503_consen 149 ---GPRPAPAAAWGARSDAG--AY--PGYPRIVFHGTADTTVNPQNADQLVAQWLN 197 (220)
T ss_pred ---CCCCChHHHHHhhhhcc--CC--CCCCEEEEecCCCCccCcchHHHHHHHHHH
Confidence 00011111111111110 11 125999999999999999999998888765
No 106
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.52 E-value=2.9e-13 Score=125.78 Aligned_cols=208 Identities=16% Similarity=0.183 Sum_probs=135.0
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
.+..-++|++||.-...........+..|++.||.++.+|++|.+++..++. ++ .+..+++|+..+++++...
T Consensus 30 tgs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~---~G-n~~~eadDL~sV~q~~s~~--- 102 (269)
T KOG4667|consen 30 TGSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFY---YG-NYNTEADDLHSVIQYFSNS--- 102 (269)
T ss_pred cCCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccc---cC-cccchHHHHHHHHHHhccC---
Confidence 3456789999996544322233446778899999999999999777665552 22 3344679999999998653
Q ss_pred CCCcE--EEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCC---CCCCchhhhhccCcC--CccCCCCCChh
Q 003363 669 NPSKV--TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT---DIPDWCYVESYGSKG--KDSFTESPSVE 741 (826)
Q Consensus 669 d~~rv--~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~ 741 (826)
+|+ .|+|||-||-+++.++.++++ +.-++..++-++........ +...|....-+-... ...+......+
T Consensus 103 --nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~e 179 (269)
T KOG4667|consen 103 --NRVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEE 179 (269)
T ss_pred --ceEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHH
Confidence 343 599999999999999999887 66777777777665443211 111111110000000 00011111112
Q ss_pred hHHHHhhcCcccccCCC--CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCH
Q 003363 742 DLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 810 (826)
Q Consensus 742 ~~~~~~~~sp~~~~~~i--~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~ 810 (826)
........+-.....+| +||+|-+||..|.+||.+.+.++++.++. .++.++||++|.+...+..
T Consensus 180 SlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~n----H~L~iIEgADHnyt~~q~~ 246 (269)
T KOG4667|consen 180 SLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN----HKLEIIEGADHNYTGHQSQ 246 (269)
T ss_pred HHHHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccC----CceEEecCCCcCccchhhh
Confidence 22222222222222223 69999999999999999999999999987 6899999999999865543
No 107
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.52 E-value=3.4e-13 Score=138.75 Aligned_cols=205 Identities=18% Similarity=0.184 Sum_probs=120.0
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (826)
|.||++||.+.+ ...|...+..| .+|.|+++|+||.+. +... . ...+++..+.+..++++ .+.++
T Consensus 3 p~vvllHG~~~~--~~~w~~~~~~l--~~~~vi~~D~~G~G~---S~~~---~---~~~~~~~~~~l~~~l~~--~~~~~ 67 (242)
T PRK11126 3 PWLVFLHGLLGS--GQDWQPVGEAL--PDYPRLYIDLPGHGG---SAAI---S---VDGFADVSRLLSQTLQS--YNILP 67 (242)
T ss_pred CEEEEECCCCCC--hHHHHHHHHHc--CCCCEEEecCCCCCC---CCCc---c---ccCHHHHHHHHHHHHHH--cCCCC
Confidence 679999997765 45777777777 379999999999544 3211 1 11355555555555554 24578
Q ss_pred EEEEEecchHHHHHHHHHhCCC-ceeEEEecCCccchhhh----ccCCCCCCchh----------hhh-ccCcCCccCCC
Q 003363 673 VTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALM----VGTTDIPDWCY----------VES-YGSKGKDSFTE 736 (826)
Q Consensus 673 v~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p~~~~~~~----~~~~~~~~~~~----------~~~-~~~~~~~~~~~ 736 (826)
+.++||||||.+++.++.++|+ +++++++.++....... ........|.. ... +.......+..
T Consensus 68 ~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (242)
T PRK11126 68 YWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVFASLNA 147 (242)
T ss_pred eEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchhhccCc
Confidence 9999999999999999999866 49999887754321100 00000000100 000 00000000000
Q ss_pred CC-----------ChhhHHHHh-h------cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC
Q 003363 737 SP-----------SVEDLTRFH-S------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 798 (826)
Q Consensus 737 ~~-----------~~~~~~~~~-~------~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p 798 (826)
.. .......+. . .+....+.++++|+|+++|++|..+. .+.+.. ..++++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~~-----~~~~~~i~ 217 (242)
T PRK11126 148 EQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQL-----ALPLHVIP 217 (242)
T ss_pred cHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHHh-----cCeEEEeC
Confidence 00 000000010 0 01123467889999999999998541 222221 47899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 799 NDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 799 ~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
++||.+.... ..++.+.|..||++
T Consensus 218 ~~gH~~~~e~-p~~~~~~i~~fl~~ 241 (242)
T PRK11126 218 NAGHNAHREN-PAAFAASLAQILRL 241 (242)
T ss_pred CCCCchhhhC-hHHHHHHHHHHHhh
Confidence 9999876544 45788889999865
No 108
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.51 E-value=3.5e-12 Score=130.23 Aligned_cols=220 Identities=11% Similarity=0.061 Sum_probs=134.3
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCC
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~ 647 (826)
++....+.++++.|.+ .++.|+||++||.+.... ...|...+..|+++||.|+.+|+||.+...... ....+
T Consensus 6 ~~~~g~~~~~~~~p~~---~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~---~~~~~ 79 (266)
T TIGR03101 6 DAPHGFRFCLYHPPVA---VGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDF---AAARW 79 (266)
T ss_pred cCCCCcEEEEEecCCC---CCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcc---ccCCH
Confidence 3344557788888863 345799999999654321 234556778899999999999999954332111 01111
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC----------C-C
Q 003363 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----------T-D 716 (826)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~----------~-~ 716 (826)
....+|+.++++++.+.+ .++|+|+|||+||.+++.++.++|+.++++|+.+|+.....+... . .
T Consensus 80 -~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~~~~~~~~ 155 (266)
T TIGR03101 80 -DVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRLVARRLGG 155 (266)
T ss_pred -HHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHHHHHhccc
Confidence 123688889999987763 478999999999999999999999999999999998764322110 0 0
Q ss_pred CCCc---hhhhhccCcCCccCCCCC-ChhhHHHHhhcCcccccCCCCCcEEEEEeCCC-CCCCcHHHHHHHHHHHhCCCC
Q 003363 717 IPDW---CYVESYGSKGKDSFTESP-SVEDLTRFHSKSPISHISKVKTPTIFLLGAQD-LRVPVSNGLQYARALREKGVE 791 (826)
Q Consensus 717 ~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D-~~vp~~~~~~~~~~l~~~g~~ 791 (826)
.... ...+.......-.+.+.. ..+....+...+....... ..++|++.-..+ ..-......++.+++++.|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 234 (266)
T TIGR03101 156 ESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK-NCPVHWFEVRPEEGATLSPVFSRLGEQWVQSGVE 234 (266)
T ss_pred cccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC-CCceEEEEeccccCCCCCHHHHHHHHHHHHcCCe
Confidence 0000 000000000000011111 1222223322222211112 567788766433 223345667899999999999
Q ss_pred EEEEEeCCC
Q 003363 792 TKVIVFPND 800 (826)
Q Consensus 792 ~~~~~~p~~ 800 (826)
++...|+|-
T Consensus 235 v~~~~~~~~ 243 (266)
T TIGR03101 235 VTVDLVPGP 243 (266)
T ss_pred EeeeecCCc
Confidence 999999987
No 109
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.51 E-value=9.7e-13 Score=142.36 Aligned_cols=218 Identities=18% Similarity=0.184 Sum_probs=131.1
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|.||++||.+.. ...|...+..|++ +|.|+++|++|. |.+..... .......++++...+..+++. +..
T Consensus 126 ~~~~ivllHG~~~~--~~~w~~~~~~L~~-~~~Via~DlpG~---G~S~~p~~-~~~~~ys~~~~a~~l~~~i~~--l~~ 196 (383)
T PLN03084 126 NNPPVLLIHGFPSQ--AYSYRKVLPVLSK-NYHAIAFDWLGF---GFSDKPQP-GYGFNYTLDEYVSSLESLIDE--LKS 196 (383)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCC---CCCCCCcc-cccccCCHHHHHHHHHHHHHH--hCC
Confidence 45789999997754 4577777878864 899999999994 44321110 001123466666666666655 334
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh-----h---ccCCCCCCchh---hh----hc---cC----
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----M---VGTTDIPDWCY---VE----SY---GS---- 728 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-----~---~~~~~~~~~~~---~~----~~---~~---- 728 (826)
+++.|+|||+||.+++.++.++|++++++|+.+|...... . ....-...+.. .. .+ ..
T Consensus 197 ~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (383)
T PLN03084 197 DKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLRASDKALTSCGPYAMK 276 (383)
T ss_pred CCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHHHHhhhhcccCccCCC
Confidence 6899999999999999999999999999999998642100 0 00000000000 00 00 00
Q ss_pred -cCCccCCC---CCC--hhhHH-HHhhc--Cc------cc---ccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCC
Q 003363 729 -KGKDSFTE---SPS--VEDLT-RFHSK--SP------IS---HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 790 (826)
Q Consensus 729 -~~~~~~~~---~~~--~~~~~-~~~~~--sp------~~---~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~ 790 (826)
.....+.. .+. ..... .+... .. +. ...++++|+|+++|+.|..++.+..+++.+..
T Consensus 277 ~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~~~~~~~~a~~~----- 351 (383)
T PLN03084 277 EDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLNYDGVEDFCKSS----- 351 (383)
T ss_pred HHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcCHHHHHHHHHhc-----
Confidence 00000000 000 00000 00000 00 00 01357899999999999999988877766653
Q ss_pred CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 791 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 791 ~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+.++.++|+++|.+..+ ...++...|.+|+.+
T Consensus 352 ~a~l~vIp~aGH~~~~E-~Pe~v~~~I~~Fl~~ 383 (383)
T PLN03084 352 QHKLIELPMAGHHVQED-CGEELGGIISGILSK 383 (383)
T ss_pred CCeEEEECCCCCCcchh-CHHHHHHHHHHHhhC
Confidence 36889999999987754 445888888888863
No 110
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.50 E-value=2e-12 Score=134.29 Aligned_cols=313 Identities=17% Similarity=0.174 Sum_probs=164.9
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
+.+++||+++.|..+.. .+.+++++++ ..++.+|||..+- .......+||+++.|+|+.+.. ++
T Consensus 41 ~~ft~dG~kllF~s~~d------g~~nly~lDL--~t~~i~QLTdg~g----~~~~g~~~s~~~~~~~Yv~~~~----~l 104 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFD------GNRNLYLLDL--ATGEITQLTDGPG----DNTFGGFLSPDDRALYYVKNGR----SL 104 (386)
T ss_dssp --B-TTS-EEEEEE-TT------SS-EEEEEET--TT-EEEE---SS-----B-TTT-EE-TTSSEEEEEETTT----EE
T ss_pred CCcCCCCCEEEEEeccC------CCcceEEEEc--ccCEEEECccCCC----CCccceEEecCCCeEEEEECCC----eE
Confidence 45689999999976532 4678888776 5568899998651 1233478899999999987543 68
Q ss_pred EEEe-cCCceeEEEecCCCccccccCCCcccceee--cCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcce
Q 003363 182 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW--NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (826)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~w--SPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (826)
+.++ .+.+.+.+..++... .....| ..|+++++.+........+ ...|..
T Consensus 105 ~~vdL~T~e~~~vy~~p~~~---------~g~gt~v~n~d~t~~~g~e~~~~d~~~---------------l~~~~~--- 157 (386)
T PF14583_consen 105 RRVDLDTLEERVVYEVPDDW---------KGYGTWVANSDCTKLVGIEISREDWKP---------------LTKWKG--- 157 (386)
T ss_dssp EEEETTT--EEEEEE--TTE---------EEEEEEEE-TTSSEEEEEEEEGGG--------------------SHHH---
T ss_pred EEEECCcCcEEEEEECCccc---------ccccceeeCCCccEEEEEEEeehhccC---------------ccccHH---
Confidence 8888 566666666666443 233455 5679988887543211100 001110
Q ss_pred eecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 259 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
| .+.+.......|+.+|+.+|+.+.+ .....-.+++.+||.... ++.-+-+..- ..-+..||
T Consensus 158 f----~e~~~a~p~~~i~~idl~tG~~~~v--~~~~~wlgH~~fsP~dp~----li~fCHEGpw--------~~Vd~RiW 219 (386)
T PF14583_consen 158 F----REFYEARPHCRIFTIDLKTGERKVV--FEDTDWLGHVQFSPTDPT----LIMFCHEGPW--------DLVDQRIW 219 (386)
T ss_dssp H----HHHHHC---EEEEEEETTT--EEEE--EEESS-EEEEEEETTEEE----EEEEEE-S-T--------TTSS-SEE
T ss_pred H----HHHHhhCCCceEEEEECCCCceeEE--EecCccccCcccCCCCCC----EEEEeccCCc--------ceeceEEE
Confidence 0 2233334567899999999999988 566667789999996655 4443333221 11234799
Q ss_pred EEEcccccchhhhhhhhcCCCCCCcceecCCC--CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 339 AVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
.++. +++..+.+... ...+...-|+|||+.|.|.+... | ....-|..+|+.+++.
T Consensus 220 ~i~~-----------------dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~----~--~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 220 TINT-----------------DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP----G--GQDFWIAGYDPDTGER 276 (386)
T ss_dssp EEET-----------------TS---EESS---TTEEEEEEEE-TTSS-EEEEEEET----T--T--EEEEEE-TTT--E
T ss_pred EEEc-----------------CCCcceeeecCCCCcccccccccCCCCEEEEEeecC----C--CCceEEEeeCCCCCCc
Confidence 9997 66666666543 33467788999999999987643 1 2334688899888665
Q ss_pred CCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe--------------CCeEEEEEEECCCCcEEE
Q 003363 417 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--------------GSSQVIISVNVSSGELLR 482 (826)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~--------------~~~~~l~~vdl~tg~~~~ 482 (826)
+.+..... + ..+.-++||+.+ +.-.. ....-||.+++.+++...
T Consensus 277 ~~~~~~p~------------------~---~H~~ss~Dg~L~-vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~ 334 (386)
T PF14583_consen 277 RRLMEMPW------------------C---SHFMSSPDGKLF-VGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK 334 (386)
T ss_dssp EEEEEE-S------------------E---EEEEE-TTSSEE-EEEE-------------------EEEEEETTTTEEEE
T ss_pred eEEEeCCc------------------e---eeeEEcCCCCEE-EecCCCCCccccccccceecCCcEEEEeccccCceee
Confidence 33211110 0 011224666633 22211 112367888998888776
Q ss_pred ecCCCC-----------CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 483 ITPAES-----------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 483 lt~~~~-----------~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
|..... .+-.+.|+|||++++|.+.- ..++.||++++.
T Consensus 335 l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~ 383 (386)
T PF14583_consen 335 LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIP 383 (386)
T ss_dssp EEE-------BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--
T ss_pred eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCc
Confidence 654321 24557899999998887765 666789998864
No 111
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.49 E-value=1.5e-12 Score=135.88 Aligned_cols=214 Identities=16% Similarity=0.184 Sum_probs=124.7
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
+..|.||++||..+. ...|......|.++||.|+++|+||.+ .+.. .......+++..+.+..+++... .
T Consensus 16 ~~~p~vvliHG~~~~--~~~w~~~~~~L~~~g~~vi~~dl~g~G---~s~~----~~~~~~~~~~~~~~l~~~i~~l~-~ 85 (273)
T PLN02211 16 RQPPHFVLIHGISGG--SWCWYKIRCLMENSGYKVTCIDLKSAG---IDQS----DADSVTTFDEYNKPLIDFLSSLP-E 85 (273)
T ss_pred CCCCeEEEECCCCCC--cCcHHHHHHHHHhCCCEEEEecccCCC---CCCC----CcccCCCHHHHHHHHHHHHHhcC-C
Confidence 456899999997655 457888888998899999999999944 3211 01111345555555544444321 2
Q ss_pred CCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc----CCCCCCchhhhh-----ccC-------cC---
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTDIPDWCYVES-----YGS-------KG--- 730 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~~~~~~~~~~~~-----~~~-------~~--- 730 (826)
.+++.|+||||||.++..++.++|++++++|+.++......+.. ....+.+..... ++. ..
T Consensus 86 ~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (273)
T PLN02211 86 NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTSAIIK 165 (273)
T ss_pred CCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCceeeeC
Confidence 47899999999999999999999999999999876431100000 000000000000 000 00
Q ss_pred ----Cc-cCCCCCChhhHH---HHhhcCc---c------cccCCC-CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCE
Q 003363 731 ----KD-SFTESPSVEDLT---RFHSKSP---I------SHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 792 (826)
Q Consensus 731 ----~~-~~~~~~~~~~~~---~~~~~sp---~------~~~~~i-~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 792 (826)
.. .+...+. +... ......+ + ....++ ++|+++|.|++|..+|++..+.+.+.+.. .
T Consensus 166 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~----~ 240 (273)
T PLN02211 166 KEFRRKILYQMSPQ-EDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPP----S 240 (273)
T ss_pred HHHHHHHHhcCCCH-HHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCc----c
Confidence 00 0111111 1111 0111011 1 112344 68999999999999999998888877653 3
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 003363 793 KVIVFPNDVHGIERPQSDFESFLNIGLW 820 (826)
Q Consensus 793 ~~~~~p~~~H~~~~~~~~~~~~~~i~~w 820 (826)
+++.++ +||........ ++...|.+.
T Consensus 241 ~~~~l~-~gH~p~ls~P~-~~~~~i~~~ 266 (273)
T PLN02211 241 QVYELE-SDHSPFFSTPF-LLFGLLIKA 266 (273)
T ss_pred EEEEEC-CCCCccccCHH-HHHHHHHHH
Confidence 777886 79986654433 444444443
No 112
>COG0400 Predicted esterase [General function prediction only]
Probab=99.48 E-value=2.1e-12 Score=125.56 Aligned_cols=188 Identities=17% Similarity=0.169 Sum_probs=127.6
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhc-CCCCCC----cchHHHHHHHHHHH
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS-LPGKVG----SQDVNDVLTAIDHV 662 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~-~~~~~~----~~~~~D~~~~i~~l 662 (826)
.....|+||++||.+.. ...+......+. -.+.++.+.-+-.-..+..+... ....+- ......+.++++.+
T Consensus 14 ~~p~~~~iilLHG~Ggd--e~~~~~~~~~~~-P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~ 90 (207)
T COG0400 14 GDPAAPLLILLHGLGGD--ELDLVPLPELIL-PNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEEL 90 (207)
T ss_pred CCCCCcEEEEEecCCCC--hhhhhhhhhhcC-CCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 45567899999995533 334433333222 23455444322111111111100 011111 11234455666666
Q ss_pred HHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhh
Q 003363 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 742 (826)
Q Consensus 663 ~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (826)
.++..+|.+|+.++|+|.|+.+++.+..++|+.++++++.+|..-... .
T Consensus 91 ~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~------------------------------~- 139 (207)
T COG0400 91 AEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP------------------------------E- 139 (207)
T ss_pred HHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC------------------------------c-
Confidence 667779999999999999999999999999999999999988542110 0
Q ss_pred HHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 743 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 743 ~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
..-..-.+|+|++||+.|++||...+.++.+.|++.|.+++...++ .||.+. .+.++.+.+|+.
T Consensus 140 ----------~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~ 203 (207)
T COG0400 140 ----------LLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLA 203 (207)
T ss_pred ----------cccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHH
Confidence 0001234899999999999999999999999999999999999998 899886 466788888998
Q ss_pred HHc
Q 003363 823 KYC 825 (826)
Q Consensus 823 ~~l 825 (826)
+.+
T Consensus 204 ~~~ 206 (207)
T COG0400 204 NTL 206 (207)
T ss_pred hcc
Confidence 764
No 113
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.48 E-value=1.9e-13 Score=135.99 Aligned_cols=174 Identities=20% Similarity=0.222 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh---ccCC--CCCCchhhhhc
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---VGTT--DIPDWCYVESY 726 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~---~~~~--~~~~~~~~~~~ 726 (826)
++-+..|++||.+++.+++++|+|+|.|.||-+|+.++..+| .++++|+.+|..-.... .... .++.+......
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 456789999999999999999999999999999999999988 79999998885322110 0000 11111000000
Q ss_pred c-CcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHH-HHHHHHHHHhCCCC--EEEEEeCCCCC
Q 003363 727 G-SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVE--TKVIVFPNDVH 802 (826)
Q Consensus 727 ~-~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~-~~~~~~~l~~~g~~--~~~~~~p~~~H 802 (826)
. ......+...........-......-.++++++|+|++.|++|...|... +..+.++|+++|.+ ++++.||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred ceecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 0 00000000000000000000111223467889999999999999998755 44677889988765 88999999999
Q ss_pred CCCCC---------------------------CCHHHHHHHHHHHHHHHcC
Q 003363 803 GIERP---------------------------QSDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 803 ~~~~~---------------------------~~~~~~~~~i~~w~~~~l~ 826 (826)
.+..+ ....+.|.++++||++||+
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 86432 1346889999999999985
No 114
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.44 E-value=1.1e-11 Score=129.52 Aligned_cols=242 Identities=18% Similarity=0.163 Sum_probs=148.8
Q ss_pred CCeeEEEEEEecCCC---CCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 572 AQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~---~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
||..+..=++.+.+- ......|+||++||-.++.........+..+.+.||.|+++|.||.++..-.. +.-+-
T Consensus 102 DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtT----pr~f~ 177 (409)
T KOG1838|consen 102 DGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTT----PRLFT 177 (409)
T ss_pred CCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCC----Cceee
Confidence 444454444444332 12356799999999766654434445666778999999999999976543222 22223
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccchh-hhccCCCCCCchhh-
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLA-LMVGTTDIPDWCYV- 723 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~-~~~~~~~~~~~~~~- 723 (826)
....+|+.++++++.++. ...++..+|.|+||.+...++++..+ +..|+++.+|+--.. ...-......+.+.
T Consensus 178 ag~t~Dl~~~v~~i~~~~--P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~~~~~~~~~y~~ 255 (409)
T KOG1838|consen 178 AGWTEDLREVVNHIKKRY--PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSIETPLYRRFYNR 255 (409)
T ss_pred cCCHHHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHHhcccchHHHHH
Confidence 335899999999999984 34689999999999999999886543 455566666643110 00000000001000
Q ss_pred ---------------------------------hhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCC
Q 003363 724 ---------------------------------ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 770 (826)
Q Consensus 724 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D 770 (826)
..+.......+.+.+. ..+.|...|+..++++|++|+|+|+..+|
T Consensus 256 ~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~--~deYY~~aSs~~~v~~I~VP~L~ina~DD 333 (409)
T KOG1838|consen 256 ALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKS--VDEYYKKASSSNYVDKIKVPLLCINAADD 333 (409)
T ss_pred HHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCc--HHHHHhhcchhhhcccccccEEEEecCCC
Confidence 0001111111222222 33566778999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCC---CHHHHHHH-HHHHHHHH
Q 003363 771 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ---SDFESFLN-IGLWFKKY 824 (826)
Q Consensus 771 ~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~---~~~~~~~~-i~~w~~~~ 824 (826)
+++|.. +.-..+. ..+..+-+++-.-+||--.... +...++.+ +.+||...
T Consensus 334 Pv~p~~-~ip~~~~--~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 334 PVVPEE-AIPIDDI--KSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred CCCCcc-cCCHHHH--hcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHH
Confidence 999875 2223222 2345788888888899532221 44456666 88888654
No 115
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.43 E-value=2.2e-12 Score=139.67 Aligned_cols=198 Identities=14% Similarity=0.130 Sum_probs=115.5
Q ss_pred chHHHH---HHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCc-EEEEEecchHHHH
Q 003363 610 YSKSLA---FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLT 685 (826)
Q Consensus 610 ~~~~~~---~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a 685 (826)
|..++. .|...+|.|+++|+||. |.+. ... ....+..+.+..+++. ++.++ +.|+||||||+++
T Consensus 85 w~~~v~~~~~L~~~~~~Vi~~Dl~G~---g~s~----~~~---~~~~~~a~dl~~ll~~--l~l~~~~~lvG~SmGG~vA 152 (343)
T PRK08775 85 WEGLVGSGRALDPARFRLLAFDFIGA---DGSL----DVP---IDTADQADAIALLLDA--LGIARLHAFVGYSYGALVG 152 (343)
T ss_pred chhccCCCCccCccccEEEEEeCCCC---CCCC----CCC---CCHHHHHHHHHHHHHH--cCCCcceEEEEECHHHHHH
Confidence 444453 45455799999999994 3331 111 1234444444444444 23345 5799999999999
Q ss_pred HHHHHhCCCceeEEEecCCccchhh----hcc--------C-C-CCC-C------chhhhhccC-c-CCccCCCC-----
Q 003363 686 THLIGQAPDKFVAAAARNPLCNLAL----MVG--------T-T-DIP-D------WCYVESYGS-K-GKDSFTES----- 737 (826)
Q Consensus 686 ~~~a~~~p~~~~a~v~~~p~~~~~~----~~~--------~-~-~~~-~------~~~~~~~~~-~-~~~~~~~~----- 737 (826)
+.++.++|++++++|++++...... ... . . ... . +.....+.. . ....+...
T Consensus 153 ~~~A~~~P~~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (343)
T PRK08775 153 LQFASRHPARVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVIN 232 (343)
T ss_pred HHHHHHChHhhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccC
Confidence 9999999999999999987532110 000 0 0 000 0 000000000 0 00000000
Q ss_pred ----CChh-hH-----HHHhhcCc-------------ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 738 ----PSVE-DL-----TRFHSKSP-------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 738 ----~~~~-~~-----~~~~~~sp-------------~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
.... .. ......++ ...+.++++|+|+++|++|..+|+..+.++.+.+.. ..++
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p---~a~l 309 (343)
T PRK08775 233 GRVRVAAEDYLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGP---RGSL 309 (343)
T ss_pred CCccchHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCC---CCeE
Confidence 0000 00 00000000 113567899999999999999999988888877742 3689
Q ss_pred EEeCC-CCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 795 IVFPN-DVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 795 ~~~p~-~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+++++ +||.....+. ..+...+.+||.+
T Consensus 310 ~~i~~~aGH~~~lE~P-e~~~~~l~~FL~~ 338 (343)
T PRK08775 310 RVLRSPYGHDAFLKET-DRIDAILTTALRS 338 (343)
T ss_pred EEEeCCccHHHHhcCH-HHHHHHHHHHHHh
Confidence 99985 9998775544 4888889999975
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.43 E-value=1.1e-10 Score=124.16 Aligned_cols=246 Identities=15% Similarity=0.118 Sum_probs=140.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
....+|+|||+.++.....+ + .+.+| ..++..+.+...... ..+.|+|||+.|+.....
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~-~---~v~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~g~~l~~~~~~----- 93 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDS-D---TIQVIDLATGEVIGTLPSGPDP----------ELFALHPNGKILYIANED----- 93 (300)
T ss_pred CCceEECCCCCEEEEEECCC-C---eEEEEECCCCcEEEeccCCCCc----------cEEEECCCCCEEEEEcCC-----
Confidence 45689999999876554322 1 23444 334433333222222 578899999977654321
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
...|++||+.+++.... .+.......++|+|||+. +
T Consensus 94 --------------------------------------~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~~~dg~~----l 129 (300)
T TIGR03866 94 --------------------------------------DNLVTVIDIETRKVLAE--IPVGVEPEGMAVSPDGKI----V 129 (300)
T ss_pred --------------------------------------CCeEEEEECCCCeEEeE--eeCCCCcceEEECCCCCE----E
Confidence 24799999988764332 232334567899999997 7
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
++.... ...++.+|. .+++...............|+|||++|++.+..+
T Consensus 130 ~~~~~~--------------~~~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 130 VNTSET--------------TNMAHFIDT-----------------KTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred EEEecC--------------CCeEEEEeC-----------------CCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC
Confidence 766521 113555676 3443322111122345678999999887654332
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCC-cccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
..|++||+.+++... +......+ .... .....+.|+|||+.+++.... ...+..
T Consensus 179 ----------~~v~i~d~~~~~~~~~~~~~~~~~-------~~~~------~~~~~i~~s~dg~~~~~~~~~--~~~i~v 233 (300)
T TIGR03866 179 ----------GTVSVIDVATRKVIKKITFEIPGV-------HPEA------VQPVGIKLTKDGKTAFVALGP--ANRVAV 233 (300)
T ss_pred ----------CEEEEEEcCcceeeeeeeeccccc-------cccc------CCccceEECCCCCEEEEEcCC--CCeEEE
Confidence 468999988765321 11000000 0000 012356789999987665432 235778
Q ss_pred EECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
+|+.++++..............|+++|+.|+...... ..|.+.++.+.
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---~~i~v~d~~~~ 281 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVS---NDVSVIDVAAL 281 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCC---CeEEEEECCCC
Confidence 8998888765433223344567899999776543222 24777776544
No 117
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.41 E-value=8.1e-13 Score=136.49 Aligned_cols=217 Identities=15% Similarity=0.134 Sum_probs=107.8
Q ss_pred eeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-------C--------Cc-cchHHHHHHHHCCcEEEEECCC
Q 003363 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-------S--------LS-SYSKSLAFLSSVGYSLLIVNYR 630 (826)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-------~--------~~-~~~~~~~~la~~G~~Vl~~d~r 630 (826)
.+....+..+.++++.|++ ..++.|.||++||-+... . .. .-......|+++||+|+++|.+
T Consensus 92 ~f~~~p~~~vpaylLvPd~--~~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~ 169 (390)
T PF12715_consen 92 EFNTTPGSRVPAYLLVPDG--AKGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDAL 169 (390)
T ss_dssp EE--STTB-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--T
T ss_pred EEEccCCeeEEEEEEecCC--CCCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccc
Confidence 3445566779999999985 278999999999832211 0 00 0112467899999999999999
Q ss_pred CCCCCchhhhhc----------------CCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC
Q 003363 631 GSLGFGEEALQS----------------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (826)
Q Consensus 631 G~~g~G~~~~~~----------------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~ 694 (826)
|-|+.+...... +-..+......|...+++||..++.+|++||+++|+|+||+.++++++. .+
T Consensus 170 g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaAL-Dd 248 (390)
T PF12715_consen 170 GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAAL-DD 248 (390)
T ss_dssp TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH--T
T ss_pred cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHc-ch
Confidence 855443211000 0011122234566779999999999999999999999999999999987 46
Q ss_pred ceeEEEecCCccchhh---hccCCCCCCchhhhhccCcCCccCCCCC-ChhhHHHHhhcCcccccCCCCCcEEEEEeCCC
Q 003363 695 KFVAAAARNPLCNLAL---MVGTTDIPDWCYVESYGSKGKDSFTESP-SVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 770 (826)
Q Consensus 695 ~~~a~v~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D 770 (826)
+++++|+.+-++.... .....+..... .+..-.....-+.. ..+..+...-.. ..|+|++.|..|
T Consensus 249 RIka~v~~~~l~~~~~~~~~mt~~~~~~~~---~~~~~~~~~iPgl~r~~D~PdIasliA--------PRPll~~nG~~D 317 (390)
T PF12715_consen 249 RIKATVANGYLCTTQERALLMTMPNNNGLR---GFPNCICNYIPGLWRYFDFPDIASLIA--------PRPLLFENGGKD 317 (390)
T ss_dssp T--EEEEES-B--HHHHHHHB----TTS-------SS-GGG--TTCCCC--HHHHHHTTT--------TS-EEESS-B-H
T ss_pred hhHhHhhhhhhhccchhhHhhccccccccC---cCcchhhhhCccHHhhCccHHHHHHhC--------CCcchhhcCCcc
Confidence 8888887665543321 11000000000 00000000000000 112222221122 268999999999
Q ss_pred CCCCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 003363 771 LRVPVSNGLQYARALREKGVETKVIVFPND 800 (826)
Q Consensus 771 ~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~ 800 (826)
..+|. .+..|+.. .++-+++++.||..
T Consensus 318 klf~i--V~~AY~~~-~~p~n~~~~~~p~~ 344 (390)
T PF12715_consen 318 KLFPI--VRRAYAIM-GAPDNFQIHHYPKF 344 (390)
T ss_dssp HHHHH--HHHHHHHT-T-GGGEEE---GGG
T ss_pred cccHH--HHHHHHhc-CCCcceEEeecccc
Confidence 87744 33333332 33456899999864
No 118
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.40 E-value=5e-12 Score=119.16 Aligned_cols=171 Identities=23% Similarity=0.408 Sum_probs=124.3
Q ss_pred chHHHHHHHHCCcEEEEECC-CC---CCCCchhhh-hcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHH
Q 003363 610 YSKSLAFLSSVGYSLLIVNY-RG---SLGFGEEAL-QSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFL 684 (826)
Q Consensus 610 ~~~~~~~la~~G~~Vl~~d~-rG---~~g~G~~~~-~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~ 684 (826)
-...+..++..||.|++||+ || +.+.-.... .-..+.-......|+.+.++||..++ +..+|+++|+++||-+
T Consensus 56 ~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~ 133 (242)
T KOG3043|consen 56 TREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKV 133 (242)
T ss_pred HHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceE
Confidence 34466778889999999996 45 211111100 00111222345789999999999774 6789999999999999
Q ss_pred HHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEE
Q 003363 685 TTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIF 764 (826)
Q Consensus 685 a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLi 764 (826)
+..+....| .|.++++..|..- . ...+.++++|+|+
T Consensus 134 vv~~~~~~~-~f~a~v~~hps~~-------------------------------d------------~~D~~~vk~Pilf 169 (242)
T KOG3043|consen 134 VVTLSAKDP-EFDAGVSFHPSFV-------------------------------D------------SADIANVKAPILF 169 (242)
T ss_pred EEEeeccch-hheeeeEecCCcC-------------------------------C------------hhHHhcCCCCEEE
Confidence 888777766 7888887766321 0 1234567899999
Q ss_pred EEeCCCCCCCcHHHHHHHHHHHhCCC-CEEEEEeCCCCCCCCC-------CC---CHHHHHHHHHHHHHHHcC
Q 003363 765 LLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHGIER-------PQ---SDFESFLNIGLWFKKYCK 826 (826)
Q Consensus 765 i~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~p~~~H~~~~-------~~---~~~~~~~~i~~w~~~~l~ 826 (826)
+.|+.|..+|+....++.+.|++... ..++.+|++.+|++.. |+ ...+.++++..||++|++
T Consensus 170 l~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 170 LFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred EeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999987632 4578999999999873 22 234678899999999974
No 119
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.40 E-value=3.1e-11 Score=120.93 Aligned_cols=143 Identities=20% Similarity=0.328 Sum_probs=98.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
..+...+|||+|++||.-+ ..+..++|+-....+...+. +... |...++|||||++||..+.++...
T Consensus 116 e~Vl~~~fsp~g~~l~tGs-----GD~TvR~WD~~TeTp~~t~K-gH~~------WVlcvawsPDgk~iASG~~dg~I~- 182 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGS-----GDTTVRLWDLDTETPLFTCK-GHKN------WVLCVAWSPDGKKIASGSKDGSIR- 182 (480)
T ss_pred CcEEEEEecCCCceEEecC-----CCceEEeeccCCCCcceeec-CCcc------EEEEEEECCCcchhhccccCCeEE-
Confidence 4588999999999998642 23467888544444444443 3333 459999999999999998877543
Q ss_pred CCccCC-CCCCCCCCccCCCCCCcceeecC-----CCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003363 234 PTFSLG-STKGGSSDKDCNSWKGQGDWEED-----WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 234 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d-----~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
.|+.. ....+.....++.|+....|.|- -+...+..+++++.+||+..|+..... ......+..+.|-- .
T Consensus 183 -lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-sgHT~~VTCvrwGG--~ 258 (480)
T KOG0271|consen 183 -LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-SGHTASVTCVRWGG--E 258 (480)
T ss_pred -EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-ccCccceEEEEEcC--C
Confidence 34422 23456788889999987777552 233445556899999999888766552 34456788888964 3
Q ss_pred CCccEEEEEe
Q 003363 308 GLHQYLVFVG 317 (826)
Q Consensus 308 ~~~~~lvf~~ 317 (826)
. ++|.+
T Consensus 259 g----liySg 264 (480)
T KOG0271|consen 259 G----LIYSG 264 (480)
T ss_pred c----eEEec
Confidence 4 66665
No 120
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.40 E-value=3e-12 Score=135.35 Aligned_cols=221 Identities=19% Similarity=0.260 Sum_probs=135.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHC-CcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~-G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
...|.||++||...+ ...|...+..|... |+.|+++|..|. |+ .+.. + .-....+.+....+..+..+..
T Consensus 56 ~~~~pvlllHGF~~~--~~~w~~~~~~L~~~~~~~v~aiDl~G~-g~-~s~~---~-~~~~y~~~~~v~~i~~~~~~~~- 126 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGAS--SFSWRRVVPLLSKAKGLRVLAIDLPGH-GY-SSPL---P-RGPLYTLRELVELIRRFVKEVF- 126 (326)
T ss_pred CCCCcEEEeccccCC--cccHhhhccccccccceEEEEEecCCC-Cc-CCCC---C-CCCceehhHHHHHHHHHHHhhc-
Confidence 567889999995543 55777777777544 699999999992 22 1111 1 1112456676666666555532
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCceeEEE---ecCCccchhhhc--------c----CCC--------CCCchhhhh
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA---ARNPLCNLALMV--------G----TTD--------IPDWCYVES 725 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v---~~~p~~~~~~~~--------~----~~~--------~~~~~~~~~ 725 (826)
.+++.++|||+||++++.+|+.+|+.++.++ +.++........ . ... .+.-.+...
T Consensus 127 -~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 205 (326)
T KOG1454|consen 127 -VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEG 205 (326)
T ss_pred -CcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHh
Confidence 3459999999999999999999999999999 554433210000 0 000 000000000
Q ss_pred ccCcCCccCCC-CCChhhH--------------HH---H----h--hcCcccccCCCC-CcEEEEEeCCCCCCCcHHHHH
Q 003363 726 YGSKGKDSFTE-SPSVEDL--------------TR---F----H--SKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQ 780 (826)
Q Consensus 726 ~~~~~~~~~~~-~~~~~~~--------------~~---~----~--~~sp~~~~~~i~-~PvLii~G~~D~~vp~~~~~~ 780 (826)
........+.. ....+.. +. + . .......+.++. +|+||++|+.|..+|.+.+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~~ 285 (326)
T KOG1454|consen 206 LLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAEE 285 (326)
T ss_pred hhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHHH
Confidence 00000000000 0000000 00 0 0 022334566776 999999999999999998877
Q ss_pred HHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 781 YARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 781 ~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+.+.+. .+++++++++||.... +...++...|..|+.++.
T Consensus 286 ~~~~~p----n~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 286 LKKKLP----NAELVEIPGAGHLPHL-ERPEEVAALLRSFIARLR 325 (326)
T ss_pred HHhhCC----CceEEEeCCCCccccc-CCHHHHHHHHHHHHHHhc
Confidence 777663 4899999999998776 555688999999998764
No 121
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.39 E-value=2e-11 Score=120.41 Aligned_cols=225 Identities=20% Similarity=0.203 Sum_probs=137.8
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-ccchHHHHHHHHCCcEEEEEC-CCCCC---CCchhhhhcCCCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVN-YRGSL---GFGEEALQSLPGK 646 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vl~~d-~rG~~---g~G~~~~~~~~~~ 646 (826)
.|...++++|.|++.+ .+.|+||++||+.++... .....+-....+.||.|+.|| +.+.- +.+..+ ......
T Consensus 43 ~g~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~~~~~~-~p~~~~ 119 (312)
T COG3509 43 NGLKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDGYDRAWNANGCGNWF-GPADRR 119 (312)
T ss_pred CCCccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCccccccCCCcccccC-Cccccc
Confidence 4567889999999753 344999999997654311 111122334457899999995 22211 011110 001112
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCC-chhhhh
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD-WCYVES 725 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~-~~~~~~ 725 (826)
-+..++..+.+.+..++.+..+|+.||++.|.|.||.|+..+++.+|++|.++..+++...... ....+. ...+..
T Consensus 120 ~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~---a~~~~rp~~~m~~ 196 (312)
T COG3509 120 RGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGV---ACTPPRPVSVMAF 196 (312)
T ss_pred CCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCc---ccCCCCchhHHHh
Confidence 3445678889999999999889999999999999999999999999999999988777542000 000000 000000
Q ss_pred ccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHH-------------------
Q 003363 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR------------------- 786 (826)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~------------------- 786 (826)
.+ ..+|..-...-..| |-+|..|..|+..+..+..+.+.
T Consensus 197 ~G--------------------~~Dp~~p~~gG~~~--~g~g~~~~~v~~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~ 254 (312)
T COG3509 197 HG--------------------TADPLNPYHGGGVP--IGRGQRDGVVSAADLAARWAAVNGCQAGPDTAELPDVGDGTD 254 (312)
T ss_pred cC--------------------CCCCCCCCCCCCcc--cccccccccccHHHHHHHHHHhcCCCCCCcccccCCCcccce
Confidence 00 11221111111223 66777777665555555555542
Q ss_pred ----hCCCCEEEEEeCCCCCCCCCCC-----------CHHHHHHHHHHHHHHH
Q 003363 787 ----EKGVETKVIVFPNDVHGIERPQ-----------SDFESFLNIGLWFKKY 824 (826)
Q Consensus 787 ----~~g~~~~~~~~p~~~H~~~~~~-----------~~~~~~~~i~~w~~~~ 824 (826)
..+.+++++.+.+.||...... ...+..++|.+||..|
T Consensus 255 ~~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~ 307 (312)
T COG3509 255 YDTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQH 307 (312)
T ss_pred eeccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhc
Confidence 2245689999999999876321 1235678899999876
No 122
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.35 E-value=1.7e-11 Score=155.69 Aligned_cols=227 Identities=16% Similarity=0.190 Sum_probs=133.9
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
..|+||++||.+.+ ...|...+..|.. +|.|+++|+||.+.+................++++.+.+..++++ ++.
T Consensus 1370 ~~~~vVllHG~~~s--~~~w~~~~~~L~~-~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~--l~~ 1444 (1655)
T PLN02980 1370 EGSVVLFLHGFLGT--GEDWIPIMKAISG-SARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH--ITP 1444 (1655)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHhC-CCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHH--hCC
Confidence 45789999997765 4467777777754 699999999995443211000000001123456666666555554 345
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh--c--cCCCCCCc----------hhhhhccC-cCCccCC
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM--V--GTTDIPDW----------CYVESYGS-KGKDSFT 735 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~--~--~~~~~~~~----------~~~~~~~~-~~~~~~~ 735 (826)
+++.|+||||||.+++.++.++|++++++|+.++...+... . .......+ .+...+.. .......
T Consensus 1445 ~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 1524 (1655)
T PLN02980 1445 GKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGELWKSLR 1524 (1655)
T ss_pred CCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHHhhhhc
Confidence 78999999999999999999999999999988764221100 0 00000000 00000000 0000000
Q ss_pred CCC-------------ChhhHH-HHhh------cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCC------
Q 003363 736 ESP-------------SVEDLT-RFHS------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG------ 789 (826)
Q Consensus 736 ~~~-------------~~~~~~-~~~~------~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g------ 789 (826)
..+ ...... .+.. .+....+.++++|+|+++|++|..++ ..+.++.+.+.+..
T Consensus 1525 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~ 1603 (1655)
T PLN02980 1525 NHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDK 1603 (1655)
T ss_pred cCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccc
Confidence 000 000000 0011 11123467889999999999999775 66677777765421
Q ss_pred --CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 790 --VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 790 --~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
..++++++|++||....... ..+.+.+.+||.+.
T Consensus 1604 ~~~~a~lvvI~~aGH~~~lE~P-e~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1604 GKEIIEIVEIPNCGHAVHLENP-LPVIRALRKFLTRL 1639 (1655)
T ss_pred cccceEEEEECCCCCchHHHCH-HHHHHHHHHHHHhc
Confidence 12689999999998765444 47888999999863
No 123
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.34 E-value=1.9e-11 Score=132.67 Aligned_cols=243 Identities=12% Similarity=0.077 Sum_probs=142.4
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC----------ccch-HHH---HHHHHCCcEEEEECCCCCCC-----C
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL----------SSYS-KSL---AFLSSVGYSLLIVNYRGSLG-----F 635 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~----------~~~~-~~~---~~la~~G~~Vl~~d~rG~~g-----~ 635 (826)
.+.+..|-.. ...+.++||++|+-.+.... ..|. ..+ ..|--..|.||++|.-|++. +
T Consensus 42 ~~~Y~t~G~l---n~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~ 118 (389)
T PRK06765 42 QMGYETYGTL---NRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNV 118 (389)
T ss_pred eEEEEecccc---CCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCC
Confidence 3544555443 23456999999984332110 1221 111 12334569999999998642 1
Q ss_pred chhhhhcCC--------CCCCcchHHHHHHHHHHHHHcCCCCCCcEE-EEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 636 GEEALQSLP--------GKVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 636 G~~~~~~~~--------~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
|........ .+.....+.|+.+++..+++. +..+++. ++||||||.+++.++.++|++++.+|+++...
T Consensus 119 g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~--lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~ 196 (389)
T PRK06765 119 ITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKS--LGIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNP 196 (389)
T ss_pred CCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHH--cCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCC
Confidence 221111111 123335688888888888876 3446775 99999999999999999999999999886532
Q ss_pred ch--------hh-hc-cCCCCCCch---h---------------------------hhhccCcCCccCC---CCCChhhH
Q 003363 707 NL--------AL-MV-GTTDIPDWC---Y---------------------------VESYGSKGKDSFT---ESPSVEDL 743 (826)
Q Consensus 707 ~~--------~~-~~-~~~~~~~~~---~---------------------------~~~~~~~~~~~~~---~~~~~~~~ 743 (826)
.. .. .. ....-+.|. | ...++........ ........
T Consensus 197 ~~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~~ 276 (389)
T PRK06765 197 QNDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTSF 276 (389)
T ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhhH
Confidence 11 00 00 000011110 0 0000100000000 00000000
Q ss_pred HHHh------------------------hc-------CcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCE
Q 003363 744 TRFH------------------------SK-------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 792 (826)
Q Consensus 744 ~~~~------------------------~~-------sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 792 (826)
+.|. .. +....+.++++|+|+|+|+.|..+|++.++++.+.++..+..+
T Consensus 277 e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a 356 (389)
T PRK06765 277 EKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYA 356 (389)
T ss_pred HHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCe
Confidence 1110 01 2233466889999999999999999999999999998766679
Q ss_pred EEEEeCC-CCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 793 KVIVFPN-DVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 793 ~~~~~p~-~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+++++++ .||.....+ ..++...|.+||++
T Consensus 357 ~l~~I~s~~GH~~~le~-p~~~~~~I~~FL~~ 387 (389)
T PRK06765 357 EVYEIESINGHMAGVFD-IHLFEKKIYEFLNR 387 (389)
T ss_pred EEEEECCCCCcchhhcC-HHHHHHHHHHHHcc
Confidence 9999986 899866544 34788889999875
No 124
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.34 E-value=1e-10 Score=121.79 Aligned_cols=271 Identities=17% Similarity=0.152 Sum_probs=145.1
Q ss_pred CCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceee
Q 003363 137 ENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW 215 (826)
Q Consensus 137 ~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~w 215 (826)
.|.+.+|||..+-.+....-....|.+||++|+|.++.+ +..++|.++ ..++.+|+|+.+... . .+..+
T Consensus 19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~d-g~~nly~lDL~t~~i~QLTdg~g~~--------~-~g~~~ 88 (386)
T PF14583_consen 19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFD-GNRNLYLLDLATGEITQLTDGPGDN--------T-FGGFL 88 (386)
T ss_dssp T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TT-SS-EEEEEETTT-EEEE---SS-B---------T-TT-EE
T ss_pred CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccC-CCcceEEEEcccCEEEECccCCCCC--------c-cceEE
Confidence 344567777665322222334578999999999998875 888999999 788999999865322 1 36779
Q ss_pred cCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCC
Q 003363 216 NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL 295 (826)
Q Consensus 216 SPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~ 295 (826)
||+.+.|+|+.. ...|+.+|+++++.+.|-..+...
T Consensus 89 s~~~~~~~Yv~~--------------------------------------------~~~l~~vdL~T~e~~~vy~~p~~~ 124 (386)
T PF14583_consen 89 SPDDRALYYVKN--------------------------------------------GRSLRRVDLDTLEERVVYEVPDDW 124 (386)
T ss_dssp -TTSSEEEEEET--------------------------------------------TTEEEEEETTT--EEEEEE--TTE
T ss_pred ecCCCeEEEEEC--------------------------------------------CCeEEEEECCcCcEEEEEECCccc
Confidence 999999999732 147999999999988774344443
Q ss_pred ccceEEEee--CCCCCccEEEEEeecCccee-ee------eeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCccee
Q 003363 296 SVGQVVWAP--LNEGLHQYLVFVGWSSETRK-LG------IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN 366 (826)
Q Consensus 296 ~~~~~~wSP--Dg~~~~~~lvf~~~~~~~~~-~g------~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (826)
.+...|+. |++. ++.........+ +. -.+..+..+.|+.+|+ .+|+.+.
T Consensus 125 -~g~gt~v~n~d~t~----~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl-----------------~tG~~~~ 182 (386)
T PF14583_consen 125 -KGYGTWVANSDCTK----LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL-----------------KTGERKV 182 (386)
T ss_dssp -EEEEEEEE-TTSSE----EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET-----------------TT--EEE
T ss_pred -ccccceeeCCCccE----EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC-----------------CCCceeE
Confidence 33456654 4555 555432222111 00 0122345678999999 8899998
Q ss_pred cCCCCccccCceecCCCCEEEEEeccCCCCCCCCccc-ceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCC
Q 003363 367 LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT-DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (826)
Q Consensus 367 Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~-~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 445 (826)
+.........+.|||.--.++..-.+ |++..- .+||.++.+++..+.+...... . .
T Consensus 183 v~~~~~wlgH~~fsP~dp~li~fCHE-----Gpw~~Vd~RiW~i~~dg~~~~~v~~~~~~--e----------------~ 239 (386)
T PF14583_consen 183 VFEDTDWLGHVQFSPTDPTLIMFCHE-----GPWDLVDQRIWTINTDGSNVKKVHRRMEG--E----------------S 239 (386)
T ss_dssp EEEESS-EEEEEEETTEEEEEEEEE------S-TTTSS-SEEEEETTS---EESS---TT--E----------------E
T ss_pred EEecCccccCcccCCCCCCEEEEecc-----CCcceeceEEEEEEcCCCcceeeecCCCC--c----------------c
Confidence 88877777889999855545444444 555554 4899999888665443322110 0 1
Q ss_pred CCCCccccCCCEEEEEEEeCC--eEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEe
Q 003363 446 ILSNPWLSDGCTMLLSSIWGS--SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~~--~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (826)
...--|++||+.|++.....+ ...|+.+|+++++.+++..... .+....++||+.++--.+
T Consensus 240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPW-CSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-S-EEEEEE-TTSSEEEEEE-
T ss_pred cccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCc-eeeeEEcCCCCEEEecCC
Confidence 123359999999999776443 4578899999999887755443 233345667775554443
No 125
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.33 E-value=5.6e-11 Score=132.41 Aligned_cols=227 Identities=16% Similarity=0.212 Sum_probs=133.4
Q ss_pred cCceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc---chHHHHHHHHCCcEEEEECCCCCCCCchh
Q 003363 562 KGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---YSKSLAFLSSVGYSLLIVNYRGSLGFGEE 638 (826)
Q Consensus 562 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~---~~~~~~~la~~G~~Vl~~d~rG~~g~G~~ 638 (826)
++.++.+.+. .++.+.|.|.. .....+.||++||.....+... -...+.+|.++||.|+++|+||.+.....
T Consensus 163 Tpg~VV~~~~---~~eLi~Y~P~t--~~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~ 237 (532)
T TIGR01838 163 TPGAVVFENE---LFQLIQYEPTT--ETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQAD 237 (532)
T ss_pred CCCeEEEECC---cEEEEEeCCCC--CcCCCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCccccc
Confidence 3334455543 36667777763 2224566888999544322222 23578899999999999999984432111
Q ss_pred hhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHH----HHHHhC-CCceeEEEecCCccchhhhcc
Q 003363 639 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT----HLIGQA-PDKFVAAAARNPLCNLALMVG 713 (826)
Q Consensus 639 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~----~~a~~~-p~~~~a~v~~~p~~~~~~~~~ 713 (826)
........+++.++++.+.+. .+.+++.++|||+||.+++ .+++.+ +++++++++.+...|+.....
T Consensus 238 ------~~~ddY~~~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G~ 309 (532)
T TIGR01838 238 ------KTFDDYIRDGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPGE 309 (532)
T ss_pred ------CChhhhHHHHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcch
Confidence 112233456688889888876 4568899999999999863 234454 778999988887666431100
Q ss_pred C-------------------CCCCC----------------ch-hhhhc--cCcCCc----cC----CCCCC---hhhHH
Q 003363 714 T-------------------TDIPD----------------WC-YVESY--GSKGKD----SF----TESPS---VEDLT 744 (826)
Q Consensus 714 ~-------------------~~~~~----------------~~-~~~~~--~~~~~~----~~----~~~~~---~~~~~ 744 (826)
. -.++. |. +...+ +..... ++ ...|. .+...
T Consensus 310 l~~f~~~~~~~~~e~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~~~~lr 389 (532)
T TIGR01838 310 LGVFVDEEIVAGIERQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLR 389 (532)
T ss_pred hhhhcCchhHHHHHHHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHHHHHHH
Confidence 0 00000 00 00000 000000 00 00000 01111
Q ss_pred HHhhcCcc-----------cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 745 RFHSKSPI-----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 745 ~~~~~sp~-----------~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
.+...+.+ ..+.+|++|+|+++|++|.++|+..+..+.+.+.. .+..+++++||...
T Consensus 390 ~ly~~N~L~~G~~~v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~~----~~~~vL~~sGHi~~ 457 (532)
T TIGR01838 390 NLYLQNALTTGGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLGG----PKTFVLGESGHIAG 457 (532)
T ss_pred HHHhcCCCcCCeeEECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCCC----CEEEEECCCCCchH
Confidence 22222222 34678899999999999999999999888776653 46678899999743
No 126
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.31 E-value=1.6e-10 Score=109.61 Aligned_cols=251 Identities=14% Similarity=0.135 Sum_probs=158.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-ceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.+......||++.||...... -.+|.+.... .....++.. +.+ ..+.|--||++++..+++.+.
T Consensus 41 sqVNrLeiTpdk~~LAaa~~qh---vRlyD~~S~np~Pv~t~e~h~kNV----------taVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQH---VRLYDLNSNNPNPVATFEGHTKNV----------TAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred cceeeEEEcCCcchhhhccCCe---eEEEEccCCCCCceeEEeccCCce----------EEEEEeecCeEEEecCCCceE
Confidence 4688899999999999754322 2333333222 234444332 333 788999999999999999887
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEeccCCCC-CCccceEEEeeCCCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPK-SLSVGQVVWAPLNEGL 309 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~-~~~~~~~~wSPDg~~~ 309 (826)
+.+.... ..-.....+.+-+......|+-+|++++....+|++||+.... ..++ +|. +..+.+.+..|||+.
T Consensus 108 kIWdlR~---~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l--iPe~~~~i~sl~v~~dgsm- 181 (311)
T KOG0315|consen 108 KIWDLRS---LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL--IPEDDTSIQSLTVMPDGSM- 181 (311)
T ss_pred EEEeccC---cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc--CCCCCcceeeEEEcCCCcE-
Confidence 6443332 1112223344555667778888999999999999999997763 4455 454 357788999999997
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEE
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~ 389 (826)
++-.. ..++.|++++-... ....-..+.++..+.+.+....+|||+|+|+-.
T Consensus 182 ---l~a~n---------------nkG~cyvW~l~~~~----------~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 182 ---LAAAN---------------NKGNCYVWRLLNHQ----------TASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred ---EEEec---------------CCccEEEEEccCCC----------ccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 76554 33478888873210 000112234555678889999999999999988
Q ss_pred eccCCCCCCCCcccceEEEEeCCCC-C-CCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCe
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTN-G-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~-~-~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (826)
+.+. .+++|+.++- . .+.++... ..+-...||.||++| ++++.+..
T Consensus 234 ssdk-----------tv~iwn~~~~~kle~~l~gh~--------------------rWvWdc~FS~dg~Yl-vTassd~~ 281 (311)
T KOG0315|consen 234 SSDK-----------TVKIWNTDDFFKLELVLTGHQ--------------------RWVWDCAFSADGEYL-VTASSDHT 281 (311)
T ss_pred cCCc-----------eEEEEecCCceeeEEEeecCC--------------------ceEEeeeeccCccEE-EecCCCCc
Confidence 8764 4667765553 0 01111110 112256799999876 45554566
Q ss_pred EEEEEEECCCCcEEEecC
Q 003363 468 QVIISVNVSSGELLRITP 485 (826)
Q Consensus 468 ~~l~~vdl~tg~~~~lt~ 485 (826)
.+|| ++..++..+.-.
T Consensus 282 ~rlW--~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 282 ARLW--DLSAGKEVRQYQ 297 (311)
T ss_pred eeec--ccccCceeeecC
Confidence 6666 555666544433
No 127
>PRK05855 short chain dehydrogenase; Validated
Probab=99.29 E-value=4.6e-11 Score=140.02 Aligned_cols=232 Identities=9% Similarity=0.096 Sum_probs=122.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
..+|..+++..+.+ ...|+||++||.+.. ...|......| ..||.|+++|+||.+ .+... .....
T Consensus 9 ~~~g~~l~~~~~g~------~~~~~ivllHG~~~~--~~~w~~~~~~L-~~~~~Vi~~D~~G~G---~S~~~---~~~~~ 73 (582)
T PRK05855 9 SSDGVRLAVYEWGD------PDRPTVVLVHGYPDN--HEVWDGVAPLL-ADRFRVVAYDVRGAG---RSSAP---KRTAA 73 (582)
T ss_pred eeCCEEEEEEEcCC------CCCCeEEEEcCCCch--HHHHHHHHHHh-hcceEEEEecCCCCC---CCCCC---Ccccc
Confidence 34567777665432 235889999997654 45677777777 678999999999954 33211 11112
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC--CCceeEEEecC-CccchhhhccCCCC---------
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARN-PLCNLALMVGTTDI--------- 717 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~-p~~~~~~~~~~~~~--------- 717 (826)
...+++.+.+..+++.-.. ..++.|+|||+||.+++.++... ++.+..++..+ |..+..........
T Consensus 74 ~~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (582)
T PRK05855 74 YTLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLRRPTPRRLA 152 (582)
T ss_pred cCHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhcccccchhhhh
Confidence 2344444444444443111 23499999999999888776652 33333333332 21110000000000
Q ss_pred -------CCchh-------------hhhccC---cCCccCCCCCCh------------hhHHHHh----hcCcccccCCC
Q 003363 718 -------PDWCY-------------VESYGS---KGKDSFTESPSV------------EDLTRFH----SKSPISHISKV 758 (826)
Q Consensus 718 -------~~~~~-------------~~~~~~---~~~~~~~~~~~~------------~~~~~~~----~~sp~~~~~~i 758 (826)
..|.. ...... .........+.. .....+. .......+..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (582)
T PRK05855 153 RALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSRPRERYT 232 (582)
T ss_pred HHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhccCccCCc
Confidence 00000 000000 000000000000 0000000 00111124458
Q ss_pred CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 759 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 759 ~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
++|+|+++|++|..+|+.....+.+.+. ..++++++ +||....+.. ..+...+.+|+.+
T Consensus 233 ~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~-~gH~~~~e~p-~~~~~~i~~fl~~ 291 (582)
T PRK05855 233 DVPVQLIVPTGDPYVRPALYDDLSRWVP----RLWRREIK-AGHWLPMSHP-QVLAAAVAEFVDA 291 (582)
T ss_pred cCceEEEEeCCCcccCHHHhccccccCC----cceEEEcc-CCCcchhhCh-hHHHHHHHHHHHh
Confidence 8999999999999999988877765543 25666765 6898764443 4677888888875
No 128
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.28 E-value=4.3e-09 Score=110.08 Aligned_cols=353 Identities=18% Similarity=0.145 Sum_probs=177.2
Q ss_pred HHHHhhcCccccce-EEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCC
Q 003363 85 LLQDFTNISSIDKA-WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP 163 (826)
Q Consensus 85 l~~~~~~~~~~~~~-~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SP 163 (826)
|-+.+..+|+...+ -+.-.-.|-|..+.|.- .+.+++..|+.. ....++|... ..+.-..+||
T Consensus 6 lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~n----------Gksv~ir~i~~~-~~~~iYtEH~-----~~vtVAkySP 69 (603)
T KOG0318|consen 6 LKETFASLPSTERGVPIIIGGDPKGDNILYTN----------GKSVIIRNIDNP-ASVDIYTEHA-----HQVTVAKYSP 69 (603)
T ss_pred hhhhccCCCcccCCcceEeccCCCCCeEEEeC----------CCEEEEEECCCc-cceeeecccc-----ceeEEEEeCC
Confidence 44566667776543 22334578899999962 234555555332 2234555444 3577789999
Q ss_pred CCCeEEEEecCCCCCCeEEEEecCCceeEEEe-cCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCC
Q 003363 164 SGSKLLVVRNPENESPIQFELWSQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 242 (826)
Q Consensus 164 dG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~ 242 (826)
+|-++|-- +...-.+||+.-+...+.. .-+-..|.| ..++|++|+++|+-+.|.+..-...|....+.
T Consensus 70 sG~yiASG-----D~sG~vRIWdtt~~~hiLKnef~v~aG~I------~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~ 138 (603)
T KOG0318|consen 70 SGFYIASG-----DVSGKVRIWDTTQKEHILKNEFQVLAGPI------KDISWDFDSKRIAAVGEGRERFGHVFLWDSGN 138 (603)
T ss_pred CceEEeec-----CCcCcEEEEeccCcceeeeeeeeeccccc------ccceeCCCCcEEEEEecCccceeEEEEecCCC
Confidence 99988863 3333578884322222211 111223444 89999999999999887653211111111111
Q ss_pred CCCCCccCCCCCCcceeecCCC-ccCCCccCceEEEEEccCCceEeccCCC--CCCccceEEEeeCCCCCccEEEEEeec
Q 003363 243 GGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKGIP--KSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (826)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~g~~~~l~~~~--~~~~~~~~~wSPDg~~~~~~lvf~~~~ 319 (826)
..-....+..-.....+.+.-- +..++..++.+-.++ |.+-..+-+. ..--+..+.|||||+. ++-++
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe---GPPFKFk~s~r~HskFV~~VRysPDG~~----Fat~g-- 209 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE---GPPFKFKSSFREHSKFVNCVRYSPDGSR----FATAG-- 209 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEee---CCCeeeeecccccccceeeEEECCCCCe----EEEec--
Confidence 1001111111111111211100 000000111111111 1111110000 1113557899999998 66665
Q ss_pred CcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecC---CCCccccCceecCCCCEEEEEeccCCC
Q 003363 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT---ESISSAFFPRFSPDGKFLVFLSAKSSV 395 (826)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt---~~~~~~~~p~~SpDG~~l~f~s~~~~~ 395 (826)
.+..+|++|= .+|+. -.|. .+.+.++...||||+++|+-.+.+.
T Consensus 210 -------------sDgki~iyDG-----------------ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk-- 257 (603)
T KOG0318|consen 210 -------------SDGKIYIYDG-----------------KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK-- 257 (603)
T ss_pred -------------CCccEEEEcC-----------------CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc--
Confidence 3347888884 45543 3444 4578899999999999999888663
Q ss_pred CCCCCcccceEEEEeCCCCCCCC-cccc----eeeeeeeee-----------------ccCCC---CCcccccCCCCCCc
Q 003363 396 DSGAHSATDSLHRIDWPTNGNFS-SLEK----IVDVIPVVQ-----------------CAEGD---CFPGLYSSSILSNP 450 (826)
Q Consensus 396 ~~g~~~~~~~l~~~d~~~~~~~~-~~~~----~~~~~~~~~-----------------~~~~~---~f~g~~~~~~~~~~ 450 (826)
.+.+||..++...+ +..+ ...+--+|+ ..... .+.| +..++..+.
T Consensus 258 ---------t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G-HnK~ITaLt 327 (603)
T KOG0318|consen 258 ---------TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG-HNKSITALT 327 (603)
T ss_pred ---------eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc-cccceeEEE
Confidence 35666666654311 1100 111111221 11100 1111 333556777
Q ss_pred cccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 451 WLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 451 ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
-++||++|| +.+ -+..|..++..+|.--++......-....+...+..-+++.+=.++ |.+.++.
T Consensus 328 v~~d~~~i~-Sgs--yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~---l~~~~~~ 392 (603)
T KOG0318|consen 328 VSPDGKTIY-SGS--YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT---LRVISLK 392 (603)
T ss_pred EcCCCCEEE-eec--cCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe---EEEEecc
Confidence 889998775 333 3446777788888887876443322333455555333334333333 5555543
No 129
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.28 E-value=2.7e-10 Score=115.28 Aligned_cols=277 Identities=12% Similarity=0.060 Sum_probs=163.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
..+....||++|++||..+.. ...-+|.+..+.+ .++...-.+.+..| ..+.||||.++|+--..+...
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD--~Taiiw~v~~d~~-~kl~~tlvgh~~~V------~yi~wSPDdryLlaCg~~e~~-- 293 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKD--STAIIWIVVYDVH-FKLKKTLVGHSQPV------SYIMWSPDDRYLLACGFDEVL-- 293 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCC--ceEEEEEEecCcc-eeeeeeeecccCce------EEEEECCCCCeEEecCchHhe--
Confidence 458999999999999986543 3344666665555 22222222333344 789999999998775544432
Q ss_pred CCccCCCCCCCCCCccC-CCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003363 234 PTFSLGSTKGGSSDKDC-NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
..|+...+..-...+.. ......-.|-||.-...+|..+.+++.||+++.......+.. ...+.+++.++||++
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~~v~dlait~Dgk~---- 368 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-DPKVHDLAITYDGKY---- 368 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc-cceeEEEEEcCCCcE----
Confidence 34443333322222221 222335678999666677888899999999987655443211 234678999999999
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
++.+. .+..|..++. ++...+.+-.....+.+...|.||++++..-.
T Consensus 369 vl~v~---------------~d~~i~l~~~-----------------e~~~dr~lise~~~its~~iS~d~k~~LvnL~- 415 (519)
T KOG0293|consen 369 VLLVT---------------VDKKIRLYNR-----------------EARVDRGLISEEQPITSFSISKDGKLALVNLQ- 415 (519)
T ss_pred EEEEe---------------cccceeeech-----------------hhhhhhccccccCceeEEEEcCCCcEEEEEcc-
Confidence 87776 2236777776 55555545555566888999999997554332
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
+..+++||+.-....+.-.+... +.| +-.-+|.--...++.+. .-+..+|.
T Consensus 416 ----------~qei~LWDl~e~~lv~kY~Ghkq----------~~f-------iIrSCFgg~~~~fiaSG--SED~kvyI 466 (519)
T KOG0293|consen 416 ----------DQEIHLWDLEENKLVRKYFGHKQ----------GHF-------IIRSCFGGGNDKFIASG--SEDSKVYI 466 (519)
T ss_pred ----------cCeeEEeecchhhHHHHhhcccc----------cce-------EEEeccCCCCcceEEec--CCCceEEE
Confidence 25689999874322221111110 000 11224433232354443 33457888
Q ss_pred EECCCCcEEEecCCCC-CeeeEEEeecCCEEEEEEeC
Q 003363 473 VNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~s~ 508 (826)
++..+|+......+.. .+....++|.....++.+++
T Consensus 467 Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 467 WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred EEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC
Confidence 8888888765544433 44545555555444444443
No 130
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.28 E-value=2.1e-10 Score=125.09 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=122.6
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCC----cEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G----~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
|.+...++|.|+++. .+++|+|+++||..+.... .....+..|.+.| .+++.+|.......... ++.
T Consensus 191 g~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~~-~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~e----l~~--- 261 (411)
T PRK10439 191 GNSRRVWIYTTGDAA-PEERPLAILLDGQFWAESM-PVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQE----LPC--- 261 (411)
T ss_pred CCceEEEEEECCCCC-CCCCCEEEEEECHHhhhcC-CHHHHHHHHHHcCCCCceEEEEECCCCccccccc----CCc---
Confidence 556788999999875 6789999999997654322 2234455666677 35678875321111111 111
Q ss_pred cchHH-HH-HHHHHHHHHcCC--CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhh
Q 003363 649 SQDVN-DV-LTAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (826)
Q Consensus 649 ~~~~~-D~-~~~i~~l~~~~~--~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 724 (826)
..... .+ .+.+.++.++.. .|+++.+|+|+||||+.|++++.++|++|.++++.+|.+-+... .
T Consensus 262 ~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~~------------~ 329 (411)
T PRK10439 262 NADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPHR------------G 329 (411)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCCc------------c
Confidence 01111 12 233345444422 47889999999999999999999999999999999986421100 0
Q ss_pred hccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
.. ... ...+.+... ....-...++|-+|..|... ....+++++.|+++|.++++.+++| ||..
T Consensus 330 --~~--------~~~-~l~~~l~~~----~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G-GHd~ 392 (411)
T PRK10439 330 --GQ--------QEG-VLLEQLKAG----EVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG-GHDA 392 (411)
T ss_pred --CC--------chh-HHHHHHHhc----ccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-CcCH
Confidence 00 000 011111110 01112346888899998543 4678899999999999999999987 6965
Q ss_pred C
Q 003363 805 E 805 (826)
Q Consensus 805 ~ 805 (826)
.
T Consensus 393 ~ 393 (411)
T PRK10439 393 L 393 (411)
T ss_pred H
Confidence 3
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.27 E-value=2.1e-09 Score=114.12 Aligned_cols=239 Identities=12% Similarity=0.115 Sum_probs=132.7
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
++|||+.+..... ....++.+++.+ ++.. .+... .......|+|||+.++.....+ + . +
T Consensus 38 ~~~dg~~l~~~~~--------~~~~v~~~d~~~--~~~~~~~~~~------~~~~~~~~~~~g~~l~~~~~~~-~--~-l 97 (300)
T TIGR03866 38 LSKDGKLLYVCAS--------DSDTIQVIDLAT--GEVIGTLPSG------PDPELFALHPNGKILYIANEDD-N--L-V 97 (300)
T ss_pred ECCCCCEEEEEEC--------CCCeEEEEECCC--CcEEEeccCC------CCccEEEECCCCCEEEEEcCCC-C--e-E
Confidence 4789887644322 123566666432 2222 22211 2345678999999876543222 2 2 3
Q ss_pred EEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 183 ELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 183 ~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
.+|+ .++........... .++.|+|||+.+++.+...
T Consensus 98 ~~~d~~~~~~~~~~~~~~~~----------~~~~~~~dg~~l~~~~~~~------------------------------- 136 (300)
T TIGR03866 98 TVIDIETRKVLAEIPVGVEP----------EGMAVSPDGKIVVNTSETT------------------------------- 136 (300)
T ss_pred EEEECCCCeEEeEeeCCCCc----------ceEEECCCCCEEEEEecCC-------------------------------
Confidence 4442 22222222222222 5789999999988864321
Q ss_pred cCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEE
Q 003363 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (826)
..++++|..+++.... .........++|+|||+. |++.+. ....|+.+
T Consensus 137 ------------~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l~~~~~--------------~~~~v~i~ 184 (300)
T TIGR03866 137 ------------NMAHFIDTKTYEIVDN--VLVDQRPRFAEFTADGKE----LWVSSE--------------IGGTVSVI 184 (300)
T ss_pred ------------CeEEEEeCCCCeEEEE--EEcCCCccEEEECCCCCE----EEEEcC--------------CCCEEEEE
Confidence 2455678777665432 122224457899999997 766541 22368888
Q ss_pred EcccccchhhhhhhhcCCCCCCcc-eecCCC-------CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC
Q 003363 341 RVSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (826)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~-------~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~ 412 (826)
|+ .+++. ..++.. ........|||||++++..... ...|.+||..
T Consensus 185 d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~----------~~~i~v~d~~ 237 (300)
T TIGR03866 185 DV-----------------ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP----------ANRVAVVDAK 237 (300)
T ss_pred Ec-----------------CcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC----------CCeEEEEECC
Confidence 87 44432 333211 1123457899999986543322 2468999987
Q ss_pred CCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE-EEec
Q 003363 413 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRIT 484 (826)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~-~~lt 484 (826)
+++.... ... . ..+..+.|+|||+.|+.+... ...|.++|+.+++. .++.
T Consensus 238 ~~~~~~~----------~~~--~--------~~~~~~~~~~~g~~l~~~~~~--~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 238 TYEVLDY----------LLV--G--------QRVWQLAFTPDEKYLLTTNGV--SNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CCcEEEE----------EEe--C--------CCcceEEECCCCCEEEEEcCC--CCeEEEEECCCCcEEEEEE
Confidence 6543211 000 0 123467899999987655332 33577888888885 4443
No 132
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.23 E-value=3.4e-10 Score=112.64 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=120.5
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHH
Q 003363 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 657 (826)
Q Consensus 578 ~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~ 657 (826)
..++.|. ..+.+|+|||+||.. .....|....+.+++.||+|+.+|+....+ .....+++++.+
T Consensus 6 l~v~~P~---~~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~~~~~ 69 (259)
T PF12740_consen 6 LLVYYPS---SAGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVASAAE 69 (259)
T ss_pred eEEEecC---CCCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCC-----------CCcchhHHHHHH
Confidence 3577887 578899999999965 223458888999999999999999654221 122335788888
Q ss_pred HHHHHHHc--C------CCCCCcEEEEEecchHHHHHHHHHhC-----CCceeEEEecCCccchhhhccCCCCCCchhhh
Q 003363 658 AIDHVIDM--G------LANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (826)
Q Consensus 658 ~i~~l~~~--~------~~d~~rv~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 724 (826)
.++|+.+. . ..|-+||+|+|||.||-+++.++..+ +.+|++++++.|+-.+...... .
T Consensus 70 vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~~-~-------- 140 (259)
T PF12740_consen 70 VIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQT-E-------- 140 (259)
T ss_pred HHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccCC-C--------
Confidence 99998773 1 25888999999999999999998876 4589999999998632211000 0
Q ss_pred hccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCC---------CCCc-HHHHHHHHHHHhCCCCEEE
Q 003363 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL---------RVPV-SNGLQYARALREKGVETKV 794 (826)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~---------~vp~-~~~~~~~~~l~~~g~~~~~ 794 (826)
|. . ....| ..-+...|+|++-..-.. ..|. .+-.++|++++ .+.-.
T Consensus 141 -------------P~-----v-~~~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~---~p~~~ 196 (259)
T PF12740_consen 141 -------------PP-----V-LTYTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECK---PPSWH 196 (259)
T ss_pred -------------Cc-----c-ccCcc--cccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcC---CCEEE
Confidence 00 0 00001 111245899998766553 2232 33456777765 36777
Q ss_pred EEeCCCCCC
Q 003363 795 IVFPNDVHG 803 (826)
Q Consensus 795 ~~~p~~~H~ 803 (826)
++..+.||.
T Consensus 197 ~v~~~~GH~ 205 (259)
T PF12740_consen 197 FVAKDYGHM 205 (259)
T ss_pred EEeCCCCch
Confidence 788999996
No 133
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.23 E-value=2.5e-09 Score=110.19 Aligned_cols=149 Identities=17% Similarity=0.290 Sum_probs=109.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
.++....++-|++.++...+.+ + .+.+. .+++..+...--..+ ..+..|||||+++.. +
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dg-D---~l~iyd~~~~e~kr~e~~lg~I----------~av~vs~dGK~~vva-N---- 420 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDG-D---KLGIYDKDGGEVKRIEKDLGNI----------EAVKVSPDGKKVVVA-N---- 420 (668)
T ss_pred CceEEEEEccCCcceEEeccCC-c---eEEEEecCCceEEEeeCCccce----------EEEEEcCCCcEEEEE-c----
Confidence 3588888888888666543322 2 23444 444544443222233 788999999988864 2
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.+.+||++|+++|+++.+. .....-+..+.|+|++++
T Consensus 421 ---------------------------------------dr~el~vididngnv~~id-kS~~~lItdf~~~~nsr~--- 457 (668)
T COG4946 421 ---------------------------------------DRFELWVIDIDNGNVRLID-KSEYGLITDFDWHPNSRW--- 457 (668)
T ss_pred ---------------------------------------CceEEEEEEecCCCeeEec-ccccceeEEEEEcCCcee---
Confidence 2368999999999999884 233345778999999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
|+|.-. .|+. ..+|.++|. ++++...+|.......+|+|-|||++|+|++.
T Consensus 458 -iAYafP------~gy~-----tq~Iklydm-----------------~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 458 -IAYAFP------EGYY-----TQSIKLYDM-----------------DGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred -EEEecC------ccee-----eeeEEEEec-----------------CCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 999752 2221 136888888 88899999999999999999999999999998
Q ss_pred cC
Q 003363 392 KS 393 (826)
Q Consensus 392 ~~ 393 (826)
+.
T Consensus 509 Rs 510 (668)
T COG4946 509 RS 510 (668)
T ss_pred cc
Confidence 85
No 134
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.22 E-value=1.6e-09 Score=104.71 Aligned_cols=238 Identities=16% Similarity=0.138 Sum_probs=143.9
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (826)
|+||.+. ++ .+.++.+.++++.++ ...++|..+. ..+..+++|||.++|+.-+.+. .+.+
T Consensus 72 s~dg~~a-lS--------~swD~~lrlWDl~~g-~~t~~f~GH~-----~dVlsva~s~dn~qivSGSrDk-----Tikl 131 (315)
T KOG0279|consen 72 SSDGNFA-LS--------ASWDGTLRLWDLATG-ESTRRFVGHT-----KDVLSVAFSTDNRQIVSGSRDK-----TIKL 131 (315)
T ss_pred ccCCceE-Ee--------ccccceEEEEEecCC-cEEEEEEecC-----CceEEEEecCCCceeecCCCcc-----eeee
Confidence 7888644 32 234667888887443 4456666665 6799999999999998755443 5778
Q ss_pred ecCCceeEEEecCCCccccccCCCcccceeecCCCC--eEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecC
Q 003363 185 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET--LIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (826)
Q Consensus 185 ~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~--~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (826)
|+.-...+.+-......+ |+..+.|||... .|+-.+.
T Consensus 132 wnt~g~ck~t~~~~~~~~------WVscvrfsP~~~~p~Ivs~s~----------------------------------- 170 (315)
T KOG0279|consen 132 WNTLGVCKYTIHEDSHRE------WVSCVRFSPNESNPIIVSASW----------------------------------- 170 (315)
T ss_pred eeecccEEEEEecCCCcC------cEEEEEEcCCCCCcEEEEccC-----------------------------------
Confidence 843222333332222233 559999999963 3333322
Q ss_pred CCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEc
Q 003363 263 WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (826)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (826)
+..+.+||+.+-+++.-- ......+..+++||||.. .++.+ ..+.++++|+
T Consensus 171 ---------DktvKvWnl~~~~l~~~~-~gh~~~v~t~~vSpDGsl----casGg---------------kdg~~~LwdL 221 (315)
T KOG0279|consen 171 ---------DKTVKVWNLRNCQLRTTF-IGHSGYVNTVTVSPDGSL----CASGG---------------KDGEAMLWDL 221 (315)
T ss_pred ---------CceEEEEccCCcchhhcc-ccccccEEEEEECCCCCE----EecCC---------------CCceEEEEEc
Confidence 246889999988776551 233446788999999997 66644 4568999998
Q ss_pred ccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCC-ccc
Q 003363 343 SLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLE 421 (826)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~-~~~ 421 (826)
+.++.-.-.+....+.+..|||.-=.|+-... ..|.+||+.++.... +..
T Consensus 222 -----------------~~~k~lysl~a~~~v~sl~fspnrywL~~at~------------~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 222 -----------------NEGKNLYSLEAFDIVNSLCFSPNRYWLCAATA------------TSIKIWDLESKAVVEELKL 272 (315)
T ss_pred -----------------cCCceeEeccCCCeEeeEEecCCceeEeeccC------------CceEEEeccchhhhhhccc
Confidence 34433222344556889999998655543321 348999998865431 111
Q ss_pred ceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 422 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 422 ~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
+. .-+ .. .-.+.+| ..++||+||.+||.. ..++..++|.+
T Consensus 273 d~--~g~-----s~-~~~~~~c---lslaws~dG~tLf~g-~td~~irv~qv 312 (315)
T KOG0279|consen 273 DG--IGP-----SS-KAGDPIC---LSLAWSADGQTLFAG-YTDNVIRVWQV 312 (315)
T ss_pred cc--ccc-----cc-ccCCcEE---EEEEEcCCCcEEEee-ecCCcEEEEEe
Confidence 11 000 00 0000122 267899999988643 33444455544
No 135
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.21 E-value=1.3e-11 Score=113.52 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=129.7
Q ss_pred EEEEEcCCCCCCCCccchHHHHHH-HHCCcEEEEECCCCCCCCchhhhhcCCCCCCc--chHHHHHHHHHHHHHcCCCCC
Q 003363 594 LIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS--QDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~l-a~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~--~~~~D~~~~i~~l~~~~~~d~ 670 (826)
.|+++.|.-++ +...|..++..+ ...-+.+++.|.+| ||.+-. |..... .-.+|...+++-+.. ++.
T Consensus 44 ~iLlipGalGs-~~tDf~pql~~l~k~l~~TivawDPpG---YG~SrP---P~Rkf~~~ff~~Da~~avdLM~a---Lk~ 113 (277)
T KOG2984|consen 44 YILLIPGALGS-YKTDFPPQLLSLFKPLQVTIVAWDPPG---YGTSRP---PERKFEVQFFMKDAEYAVDLMEA---LKL 113 (277)
T ss_pred eeEeccccccc-ccccCCHHHHhcCCCCceEEEEECCCC---CCCCCC---CcccchHHHHHHhHHHHHHHHHH---hCC
Confidence 47777775443 355676655544 33348999999999 665532 111111 124666667666554 356
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccc-----hhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHH
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-----LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 745 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (826)
.++.|+|+|-||..++.+|+++++.+...|+.++..- ...+-+..+...|....... ....|........++.
T Consensus 114 ~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P--~e~~Yg~e~f~~~wa~ 191 (277)
T KOG2984|consen 114 EPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQP--YEDHYGPETFRTQWAA 191 (277)
T ss_pred CCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcch--HHHhcCHHHHHHHHHH
Confidence 8999999999999999999999998887776655321 11222333333443111000 0000100000011111
Q ss_pred H-------hhcC----cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHH
Q 003363 746 F-------HSKS----PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 814 (826)
Q Consensus 746 ~-------~~~s----p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~ 814 (826)
| .... -...+.+++||+||+||+.|+.++-.+.--+-..+.. .++.++|+++|.+...-. .++.
T Consensus 192 wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~~----a~~~~~peGkHn~hLrya-~eFn 266 (277)
T KOG2984|consen 192 WVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKSL----AKVEIHPEGKHNFHLRYA-KEFN 266 (277)
T ss_pred HHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhccc----ceEEEccCCCcceeeech-HHHH
Confidence 1 1100 0134688999999999999999988876555444433 789999999999875544 3788
Q ss_pred HHHHHHHHH
Q 003363 815 LNIGLWFKK 823 (826)
Q Consensus 815 ~~i~~w~~~ 823 (826)
..+++||++
T Consensus 267 klv~dFl~~ 275 (277)
T KOG2984|consen 267 KLVLDFLKS 275 (277)
T ss_pred HHHHHHHhc
Confidence 889999975
No 136
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.18 E-value=9.6e-11 Score=108.20 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=133.0
Q ss_pred CCCCcEEEEEcCCCCCCCCccc-hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
....|++||+|||.+....... ......+..+||+|..++|--++. ...-...+.++...++|+++..
T Consensus 64 ~~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q----------~htL~qt~~~~~~gv~filk~~- 132 (270)
T KOG4627|consen 64 TNQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ----------VHTLEQTMTQFTHGVNFILKYT- 132 (270)
T ss_pred CCCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcc----------cccHHHHHHHHHHHHHHHHHhc-
Confidence 3567999999999987544322 234556678999999999876432 2234456889999999999874
Q ss_pred CCCCcEEEEEecchHHHHHHHHHh-CCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHH
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRF 746 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (826)
-..+.+.+-|||.|+.+++.+.++ +..++.++++.++++++..+.......+. +. .. +..
T Consensus 133 ~n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g~dl------gL---------t~----~~a 193 (270)
T KOG4627|consen 133 ENTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESGNDL------GL---------TE----RNA 193 (270)
T ss_pred ccceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCcccccc------Cc---------cc----chh
Confidence 234678999999999999998875 34589999999999998877544322111 10 00 111
Q ss_pred hhcCc-ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 747 HSKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 747 ~~~sp-~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
...|+ +.....++.|+|++.|++|..--++|.+.+...+++ ..+..|++.+|.-
T Consensus 194 e~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~hy~ 248 (270)
T KOG4627|consen 194 ESVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYDHYD 248 (270)
T ss_pred hhcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcchhh
Confidence 22333 234567889999999999988888999999999987 6788999999963
No 137
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=1.8e-08 Score=101.88 Aligned_cols=268 Identities=12% Similarity=0.168 Sum_probs=153.4
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
++|+++.+ |+....+ ....+-.+.++...+....+-....+ ......++.++||+.|+...-. .+.-.++.
T Consensus 47 ~~~~~~~L-Y~v~~~~-----~~ggvaay~iD~~~G~Lt~ln~~~~~--g~~p~yvsvd~~g~~vf~AnY~-~g~v~v~p 117 (346)
T COG2706 47 VNPDQRHL-YVVNEPG-----EEGGVAAYRIDPDDGRLTFLNRQTLP--GSPPCYVSVDEDGRFVFVANYH-SGSVSVYP 117 (346)
T ss_pred ECCCCCEE-EEEEecC-----CcCcEEEEEEcCCCCeEEEeeccccC--CCCCeEEEECCCCCEEEEEEcc-CceEEEEE
Confidence 35777666 5554432 23455566665544443333211111 1234789999999988655443 35555555
Q ss_pred EecCCceeEEEecCCCccccccCCCc-----ccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcce
Q 003363 184 LWSQSQLEKEFHVPQTVHGSVYADGW-----FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (826)
Q Consensus 184 i~~~~~~~~~~~~~~~~~g~v~~~~~-----~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (826)
+...|.....++......... .+. .....+.||++.|+...-
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p--~~rQ~~~h~H~a~~tP~~~~l~v~DL------------------------------- 164 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGP--HERQESPHVHSANFTPDGRYLVVPDL------------------------------- 164 (346)
T ss_pred cccCCccccceeeeecCCCCC--CccccCCccceeeeCCCCCEEEEeec-------------------------------
Confidence 555565544433211110000 010 145679999987765421
Q ss_pred eecCCCccCCCccCceEEEEEccCCceEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCc
Q 003363 259 WEEDWGETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (826)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~ 336 (826)
+...|++++++.|.....+ ..+...+..+++|.|+|| ++|...+- +..-.
T Consensus 165 ------------G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k-----~aY~v~EL-----------~stV~ 216 (346)
T COG2706 165 ------------GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK-----YAYLVNEL-----------NSTVD 216 (346)
T ss_pred ------------CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc-----EEEEEecc-----------CCEEE
Confidence 2356888888888766552 123344677999999999 56655332 22223
Q ss_pred eEEEEcccccchhhhhhhhcCCCCCCcceecC---------CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEE
Q 003363 337 LYAVRVSLYKSEASELELKESSSEDLPVVNLT---------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 407 (826)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt---------~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~ 407 (826)
+|.++- ..++.+.|. .+.........||||++| |.+++. . ..|.
T Consensus 217 v~~y~~-----------------~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL-YasNRg-------~--dsI~ 269 (346)
T COG2706 217 VLEYNP-----------------AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL-YASNRG-------H--DSIA 269 (346)
T ss_pred EEEEcC-----------------CCceEEEeeeeccCccccCCCCceeEEEECCCCCEE-EEecCC-------C--CeEE
Confidence 444443 334444331 123346678899999975 788884 1 3455
Q ss_pred E--EeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003363 408 R--IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (826)
Q Consensus 408 ~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~ 485 (826)
. +|-.++... ++..+ +..+.+ ...+.++++|+.|+++...++...+|.+|..||++..+..
T Consensus 270 ~f~V~~~~g~L~--------~~~~~--~teg~~-------PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 270 VFSVDPDGGKLE--------LVGIT--PTEGQF-------PRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEEcCCCCEEE--------EEEEe--ccCCcC-------CccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 5 444443321 11111 112222 3467789999999888887888899999999999988765
No 138
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.18 E-value=4.2e-10 Score=122.96 Aligned_cols=218 Identities=19% Similarity=0.215 Sum_probs=141.6
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--cc-chHHH---HHHHHCCcEEEEECCCCCCCCchhhhhcCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--SS-YSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLP 644 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~--~~-~~~~~---~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~ 644 (826)
.||+.|..-+|.|+ ..++.|+++..+-.|..... .. ..... ..++.+||+|+..|.||++++...+..
T Consensus 27 RDGvrL~~dIy~Pa---~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~~--- 100 (563)
T COG2936 27 RDGVRLAADIYRPA---GAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFDP--- 100 (563)
T ss_pred cCCeEEEEEEEccC---CCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccce---
Confidence 47899999999998 56899999999844443221 11 11112 368999999999999998776555421
Q ss_pred CCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc----CCC---C
Q 003363 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTD---I 717 (826)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~~~---~ 717 (826)
+...+.+|-.+.|+||.++++.+ .+|+++|.||+|+..+++|+..|.-+|+++..++..|...-.. ... .
T Consensus 101 --~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d~~~~~G~~~~~~~ 177 (563)
T COG2936 101 --ESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRDDAFYGGGAELNFN 177 (563)
T ss_pred --eccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccccccccccCcchhhhhh
Confidence 22247899999999999998876 7899999999999999999999989999998888776421100 000 0
Q ss_pred CCchh-------------------------------hhhccCcCCccC----CCCCChhhHHHHhhcCcccccCCCCCcE
Q 003363 718 PDWCY-------------------------------VESYGSKGKDSF----TESPSVEDLTRFHSKSPISHISKVKTPT 762 (826)
Q Consensus 718 ~~~~~-------------------------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~sp~~~~~~i~~Pv 762 (826)
..|.. ......+....+ ...|..+ ..|.+.+-.....++++|+
T Consensus 178 ~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~d--dfW~~~~~~~d~~~i~vP~ 255 (563)
T COG2936 178 LGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRD--DFWRRGDRVADLSKIKVPA 255 (563)
T ss_pred HHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCcc--chhhccCcccccccCCCcE
Confidence 01110 000000000000 0011111 1233445566788999999
Q ss_pred EEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 763 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 763 Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
|.+.|-.|... ..+.+++..++.. +..+++-|= .|.-
T Consensus 256 L~i~gW~D~~l--~~~~~~~~~~~~r--~~~lvvgPw-~H~~ 292 (563)
T COG2936 256 LVIGGWSDGYL--HTAIKLFAFLRSR--PVKLVVGPW-THGG 292 (563)
T ss_pred EEEcccccccc--cchHHHhhhcccC--CceeEEccc-ccCC
Confidence 99999999754 5666777777664 455555443 4653
No 139
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.18 E-value=1.2e-08 Score=110.13 Aligned_cols=256 Identities=9% Similarity=0.076 Sum_probs=136.3
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
..||||+.++.. ... ...+..++++ +.+........+.+ ......+++|||++|+.....+ +.-.+|
T Consensus 41 ~~spd~~~lyv~-~~~-------~~~i~~~~~~-~~g~l~~~~~~~~~---~~p~~i~~~~~g~~l~v~~~~~-~~v~v~ 107 (330)
T PRK11028 41 VISPDKRHLYVG-VRP-------EFRVLSYRIA-DDGALTFAAESPLP---GSPTHISTDHQGRFLFSASYNA-NCVSVS 107 (330)
T ss_pred EECCCCCEEEEE-ECC-------CCcEEEEEEC-CCCceEEeeeecCC---CCceEEEECCCCCEEEEEEcCC-CeEEEE
Confidence 348999877443 221 2345555554 22222111111111 2456789999999887665432 333333
Q ss_pred EEecCCceeEEEe-cC--CCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 183 ELWSQSQLEKEFH-VP--QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 183 ~i~~~~~~~~~~~-~~--~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
.+..++....... .. ... ..+.++|||++|+....
T Consensus 108 ~~~~~g~~~~~~~~~~~~~~~----------~~~~~~p~g~~l~v~~~-------------------------------- 145 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEGLEGC----------HSANIDPDNRTLWVPCL-------------------------------- 145 (330)
T ss_pred EECCCCCCCCceeeccCCCcc----------cEeEeCCCCCEEEEeeC--------------------------------
Confidence 3332332222221 11 122 46789999998765432
Q ss_pred ecCCCccCCCccCceEEEEEccC-CceEecc----CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 003363 260 EEDWGETYAGKRQPSLFVININS-GEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 334 (826)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~-g~~~~l~----~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~ 334 (826)
....|.++|+++ +.+.... ..+....+.+++|+|||+. + |+.++. .
T Consensus 146 -----------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~----l-yv~~~~-------------~ 196 (330)
T PRK11028 146 -----------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY----A-YCVNEL-------------N 196 (330)
T ss_pred -----------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE----E-EEEecC-------------C
Confidence 236799999875 4332110 0122334667899999995 4 555332 2
Q ss_pred CceEEEEcccccchhhhhhhhcCCCCCCcce---ecC---C---CCccccCceecCCCCEEEEEeccCCCCCCCCcccce
Q 003363 335 CALYAVRVSLYKSEASELELKESSSEDLPVV---NLT---E---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDS 405 (826)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~Lt---~---~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~ 405 (826)
..|..++++. .+++.+ .+. . +........++|||++|+ ++++. ...
T Consensus 197 ~~v~v~~~~~---------------~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly-v~~~~---------~~~ 251 (330)
T PRK11028 197 SSVDVWQLKD---------------PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY-ACDRT---------ASL 251 (330)
T ss_pred CEEEEEEEeC---------------CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE-EecCC---------CCe
Confidence 3677777621 122221 111 1 011122467899999764 55442 246
Q ss_pred EEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003363 406 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (826)
Q Consensus 406 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l 483 (826)
|.+++++..+... .++...... .....+.++|||++||++....+...+|.+|..+|.++.+
T Consensus 252 I~v~~i~~~~~~~------~~~~~~~~~----------~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 252 ISVFSVSEDGSVL------SFEGHQPTE----------TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTEL 313 (330)
T ss_pred EEEEEEeCCCCeE------EEeEEEecc----------ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEc
Confidence 7777775533210 011111110 0223678999999998876656778899998878876655
No 140
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.18 E-value=8.8e-10 Score=115.02 Aligned_cols=200 Identities=21% Similarity=0.249 Sum_probs=121.3
Q ss_pred HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC---CC-CCCcEEEEEecchHHHHHHH
Q 003363 613 SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG---LA-NPSKVTVVGGSHGGFLTTHL 688 (826)
Q Consensus 613 ~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~~-d~~rv~l~G~S~GG~~a~~~ 688 (826)
.+..+.++||+|+++||.|-+ ..+. .+......++++++...+.. .+ ...+|+++|+|.||+.++++
T Consensus 18 ~l~~~L~~GyaVv~pDY~Glg---~~y~------~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~A 88 (290)
T PF03583_consen 18 FLAAWLARGYAVVAPDYEGLG---TPYL------NGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWA 88 (290)
T ss_pred HHHHHHHCCCEEEecCCCCCC---Cccc------CcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHH
Confidence 556677999999999999843 3321 22223344444444444322 12 34689999999999999887
Q ss_pred HHh----CCCc---eeEEEecCCccchhhhccCCCCCCch-h------------------hhhc----cC----------
Q 003363 689 IGQ----APDK---FVAAAARNPLCNLALMVGTTDIPDWC-Y------------------VESY----GS---------- 728 (826)
Q Consensus 689 a~~----~p~~---~~a~v~~~p~~~~~~~~~~~~~~~~~-~------------------~~~~----~~---------- 728 (826)
+.. .||+ +.++++.+|..|+..+....+...+. + ...+ +.
T Consensus 89 A~l~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c 168 (290)
T PF03583_consen 89 AELAPSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRC 168 (290)
T ss_pred HHHhHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 743 3554 78899999988875544332221110 0 0000 00
Q ss_pred --------cCCcc-------CCCCCC----hhhHHHHhhcCc-ccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhC
Q 003363 729 --------KGKDS-------FTESPS----VEDLTRFHSKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 788 (826)
Q Consensus 729 --------~~~~~-------~~~~~~----~~~~~~~~~~sp-~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~ 788 (826)
..... +..... ......+.+.+. ...-...+.|++|.||..|.+||+....+++++++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~ 248 (290)
T PF03583_consen 169 LADIVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAA 248 (290)
T ss_pred HHHHHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHc
Confidence 00000 000000 000111111111 0011233689999999999999999999999999999
Q ss_pred C-CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 789 G-VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 789 g-~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
| .+++++.+++.+|..... ......+.||...+
T Consensus 249 G~a~V~~~~~~~~~H~~~~~----~~~~~a~~Wl~~rf 282 (290)
T PF03583_consen 249 GGADVEYVRYPGGGHLGAAF----ASAPDALAWLDDRF 282 (290)
T ss_pred CCCCEEEEecCCCChhhhhh----cCcHHHHHHHHHHH
Confidence 9 799999999999975422 23367788888765
No 141
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.18 E-value=1.8e-09 Score=103.97 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcE--EEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYS--LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~--Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|+|+||-..+..+.......+++++.+.. +..+|++- ...+..+.++.+++.. .++
T Consensus 1 ~ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~~ 59 (187)
T PF05728_consen 1 MILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KPE 59 (187)
T ss_pred CeEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CCC
Confidence 389999965543333444566677777644 44444432 2445556666666652 344
Q ss_pred cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCc
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 751 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 751 (826)
.+.|+|.|+||+.|.+++.+++ +++ |+++|.+........ ..|... ..+.+....-....+.+...
T Consensus 60 ~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~----------~iG~~~-~~~~~e~~~~~~~~~~~l~~ 125 (187)
T PF05728_consen 60 NVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQD----------YIGEQT-NPYTGESYELTEEHIEELKA 125 (187)
T ss_pred CeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHH----------hhCccc-cCCCCccceechHhhhhcce
Confidence 5999999999999999998874 444 888998765332111 111100 00100000001111111111
Q ss_pred cccc-CCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 752 ISHI-SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 752 ~~~~-~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
+... ..-..++++++++.|+++++..+...++. ...++.+|++|.+... .+....|++|+
T Consensus 126 l~~~~~~~~~~~lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~~f---~~~l~~i~~f~ 186 (187)
T PF05728_consen 126 LEVPYPTNPERYLVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQDF---EEYLPQIIAFL 186 (187)
T ss_pred EeccccCCCccEEEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCccH---HHHHHHHHHhh
Confidence 1111 12236899999999999999776555443 3445678889998743 35667788776
No 142
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.17 E-value=3.4e-09 Score=103.59 Aligned_cols=285 Identities=14% Similarity=0.140 Sum_probs=181.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
+.+....|+|||..+|.. +..+.+.+|. .+..+..- ...+..|.| .++.|++|+..|+..+.+++..
T Consensus 48 geI~~~~F~P~gs~~aSg-----G~Dr~I~LWnv~gdceN~~-~lkgHsgAV------M~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASG-----GSDRAIVLWNVYGDCENFW-VLKGHSGAV------MELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred ceEEEEEECCCCCeEeec-----CCcceEEEEecccccccee-eecccccee------EeeeeccCCCEEEEecCCceEE
Confidence 458889999999999863 5556778884 44333322 234666777 9999999999999988877654
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccC--CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY--AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~--~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
.|+...++.....+.+....+... ..+-|.++ ++..+.++.+||....+...+ .........+.|..++.+
T Consensus 116 --~wD~~tG~~~rk~k~h~~~vNs~~-p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--~~~kyqltAv~f~d~s~q-- 188 (338)
T KOG0265|consen 116 --GWDAETGKRIRKHKGHTSFVNSLD-PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--FENKYQLTAVGFKDTSDQ-- 188 (338)
T ss_pred --EEecccceeeehhccccceeeecC-ccccCCeEEEecCCCceEEEEeecccchhhc--cccceeEEEEEecccccc--
Confidence 566555666666665555554333 22223332 233467899999987776655 556678889999999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEe
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
+...+ -+++|-.+|+. .......|..+...+.....||+|.+|.-.+
T Consensus 189 --v~sgg---------------Idn~ikvWd~r----------------~~d~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 189 --VISGG---------------IDNDIKVWDLR----------------KNDGLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred --eeecc---------------ccCceeeeccc----------------cCcceEEeecccCceeeEEeccCCCcccccc
Confidence 66555 22367778872 2333556777777889999999999988666
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEE
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (826)
++ +.+.+||...-... . ..+.+..... - .++-++...+|||+++.+-+. ..+..+
T Consensus 236 Md-----------~tvrvwd~rp~~p~-----~-R~v~if~g~~-h----nfeknlL~cswsp~~~~i~ag---s~dr~v 290 (338)
T KOG0265|consen 236 MD-----------NTVRVWDVRPFAPS-----Q-RCVKIFQGHI-H----NFEKNLLKCSWSPNGTKITAG---SADRFV 290 (338)
T ss_pred cc-----------ceEEEEEecccCCC-----C-ceEEEeecch-h----hhhhhcceeeccCCCCccccc---cccceE
Confidence 65 45777876442111 0 0111111100 0 133456678899999866554 346678
Q ss_pred EEEECCCCcEEEecC-CCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEe
Q 003363 471 ISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 471 ~~vdl~tg~~~~lt~-~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~ 519 (826)
|.+|..+..+....+ ..+.+....|.|....|+ .+++..+ ||++.
T Consensus 291 yvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iil-s~~sdk~---i~lge 336 (338)
T KOG0265|consen 291 YVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIIL-SCSSDKT---IYLGE 336 (338)
T ss_pred EEeecccccEEEEcCCcceeEEEeeecCCCcEEE-EeccCce---eEeec
Confidence 999986645444344 444666667888776444 4433333 66654
No 143
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.17 E-value=2.3e-11 Score=125.80 Aligned_cols=204 Identities=17% Similarity=0.182 Sum_probs=120.7
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCC-CCCCCCccchHHHHHHHHCC----cEEEEECCCCCCCCchhhh------h
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGG-PHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEAL------Q 641 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg-~~~~~~~~~~~~~~~la~~G----~~Vl~~d~rG~~g~G~~~~------~ 641 (826)
|.+...++|.|++++..+++|+|+++||. .... .......+..+.+.| .++++++..+.......+. .
T Consensus 5 g~~~~~~VylP~~y~~~~~~PvlylldG~~~~~~-~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~ 83 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPYPVLYLLDGQSGWFR-NGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSSR 83 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTEEEEEEESHTTHHHH-HHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTTC
T ss_pred CCeEEEEEEECCCCCCCCCCEEEEEccCCccccc-cchHHHHHHHHHHhCCCCceEEEEEeccccccccccccccccccc
Confidence 56678899999998888999999999995 1110 001112333344443 4566666544331111111 0
Q ss_pred cCCCCCCcchHHHH--HHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchh-hhccCCCCC
Q 003363 642 SLPGKVGSQDVNDV--LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LMVGTTDIP 718 (826)
Q Consensus 642 ~~~~~~~~~~~~D~--~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-~~~~~~~~~ 718 (826)
......+.....+. .+.+.++.++..+++++.+|+|+||||+.|+.++.++|+.|.++++.+|.++.. .+....+..
T Consensus 84 ~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~~~~w~~~~~~ 163 (251)
T PF00756_consen 84 RADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPSPSLWGPSDDE 163 (251)
T ss_dssp BCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETTHCHHHHSTCG
T ss_pred ccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccccccccCcCCcH
Confidence 01111111122332 255667777766776669999999999999999999999999999999987653 111110000
Q ss_pred CchhhhhccCcCCccCCCCCChhhHHHHhhcCccc-----ccCCCCCcEEEEEeCCCCCCC----------cHHHHHHHH
Q 003363 719 DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-----HISKVKTPTIFLLGAQDLRVP----------VSNGLQYAR 783 (826)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-----~~~~i~~PvLii~G~~D~~vp----------~~~~~~~~~ 783 (826)
.+...++.. ....-..++++..|+.|.... .....++.+
T Consensus 164 --------------------------~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~ 217 (251)
T PF00756_consen 164 --------------------------AWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQ 217 (251)
T ss_dssp --------------------------HHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHH
T ss_pred --------------------------HhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHH
Confidence 011111111 112334689999999998432 123344455
Q ss_pred HHHhCCCCEEEEEeCCCCCCC
Q 003363 784 ALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 784 ~l~~~g~~~~~~~~p~~~H~~ 804 (826)
.|+..|.+..+..++| +|..
T Consensus 218 ~l~~~g~~~~~~~~~G-~H~~ 237 (251)
T PF00756_consen 218 LLKAKGIPHTYHVFPG-GHDW 237 (251)
T ss_dssp HCCCEECTTESEEEHS-ESSH
T ss_pred HHHHcCCCceEEEecC-ccch
Confidence 5666678888889984 6754
No 144
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.16 E-value=1.8e-08 Score=108.89 Aligned_cols=269 Identities=14% Similarity=0.215 Sum_probs=146.5
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (826)
+|+++.+ |...... .....+..+.++...+....+...+ +........+.+|||++|+.... .++.-.++.+
T Consensus 45 ~~~~~~L-Y~~~e~~----~~~g~v~~~~i~~~~g~L~~~~~~~--~~g~~p~~i~~~~~g~~l~vany-~~g~v~v~~l 116 (345)
T PF10282_consen 45 SPDGRRL-YVVNEGS----GDSGGVSSYRIDPDTGTLTLLNSVP--SGGSSPCHIAVDPDGRFLYVANY-GGGSVSVFPL 116 (345)
T ss_dssp -TTSSEE-EEEETTS----STTTEEEEEEEETTTTEEEEEEEEE--ESSSCEEEEEECTTSSEEEEEET-TTTEEEEEEE
T ss_pred EeCCCEE-EEEEccc----cCCCCEEEEEECCCcceeEEeeeec--cCCCCcEEEEEecCCCEEEEEEc-cCCeEEEEEc
Confidence 6787766 6554432 1244666666655534333332111 11134567899999999866544 3355556666
Q ss_pred ecCCceeEEEecCCC-cccccc---CCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 185 WSQSQLEKEFHVPQT-VHGSVY---ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 185 ~~~~~~~~~~~~~~~-~~g~v~---~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
...+........... -+|..- ...--..+.++|||++|+. .+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v-~dl-------------------------------- 163 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV-PDL-------------------------------- 163 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE-EET--------------------------------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE-Eec--------------------------------
Confidence 655655554321100 000000 0001147889999998854 332
Q ss_pred cCCCccCCCccCceEEEEEccCCc--eEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCc
Q 003363 261 EDWGETYAGKRQPSLFVININSGE--VQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~--~~~l~--~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~ 336 (826)
+...|++++++.+. +.... ..+......+++|+|||+. +|+..+.. +.
T Consensus 164 ----------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-----~Yv~~e~s-------------~~ 215 (345)
T PF10282_consen 164 ----------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-----AYVVNELS-------------NT 215 (345)
T ss_dssp ----------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-----EEEEETTT-------------TE
T ss_pred ----------CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-----EEEecCCC-------------Cc
Confidence 22567777765543 43311 1355557789999999995 45553322 35
Q ss_pred eEEEEcccccchhhhhhhhcCCCCCCccee------cCC---CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEE
Q 003363 337 LYAVRVSLYKSEASELELKESSSEDLPVVN------LTE---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 407 (826)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------Lt~---~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~ 407 (826)
|..++++. ..+..+. +.. ........++||||++| |.+++. .+.|.
T Consensus 216 v~v~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l-yvsnr~---------~~sI~ 270 (345)
T PF10282_consen 216 VSVFDYDP---------------SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL-YVSNRG---------SNSIS 270 (345)
T ss_dssp EEEEEEET---------------TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE-EEEECT---------TTEEE
T ss_pred EEEEeecc---------------cCCceeEEEEeeeccccccccCCceeEEEecCCCEE-EEEecc---------CCEEE
Confidence 66666521 1222211 111 11145667899999975 677764 35677
Q ss_pred EEeCCC--CCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 408 RIDWPT--NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 408 ~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
+++++. +... .+..+.+ .+.+ ...+.++|||++|+++...++...+|.+|.++|.++.+.
T Consensus 271 vf~~d~~~g~l~--------~~~~~~~--~G~~-------Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 271 VFDLDPATGTLT--------LVQTVPT--GGKF-------PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEECTTTTTEE--------EEEEEEE--SSSS-------EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCceE--------EEEEEeC--CCCC-------ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 777743 2221 1121211 1111 346788999999988877778899999999999988764
No 145
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.15 E-value=5.7e-08 Score=104.85 Aligned_cols=255 Identities=14% Similarity=0.072 Sum_probs=132.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec--CCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
.....++||||++|+...... +.-..|.+..++....+... .... ..+.++|||+.|+.....
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~-~~i~~~~~~~~g~l~~~~~~~~~~~p----------~~i~~~~~g~~l~v~~~~---- 100 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPE-FRVLSYRIADDGALTFAAESPLPGSP----------THISTDHQGRFLFSASYN---- 100 (330)
T ss_pred CCccEEECCCCCEEEEEECCC-CcEEEEEECCCCceEEeeeecCCCCc----------eEEEECCCCCEEEEEEcC----
Confidence 456779999999886654422 33333445433433322221 1122 578999999977665321
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC-CceE-eccCCCCCCccceEEEeeCCCCCc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQ-AVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-g~~~-~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
...|.+++++. |.+. .+...+....+..++++|||+.
T Consensus 101 ---------------------------------------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~-- 139 (330)
T PRK11028 101 ---------------------------------------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRT-- 139 (330)
T ss_pred ---------------------------------------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCE--
Confidence 25678888753 3221 1110222234556789999996
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcce-------ecCCCCccccCceecCCC
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-------NLTESISSAFFPRFSPDG 383 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~Lt~~~~~~~~p~~SpDG 383 (826)
|+... . ....|+++|+. ..+... ++.. ........|+|||
T Consensus 140 --l~v~~-~-------------~~~~v~v~d~~----------------~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg 186 (330)
T PRK11028 140 --LWVPC-L-------------KEDRIRLFTLS----------------DDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQ 186 (330)
T ss_pred --EEEee-C-------------CCCEEEEEEEC----------------CCCcccccCCCceecCC-CCCCceEEECCCC
Confidence 65443 2 22368888873 112221 1111 2235567999999
Q ss_pred CEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEE
Q 003363 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (826)
Q Consensus 384 ~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (826)
++|+... .. ...|.+++++.+... + ..+..+...+.+ +.+ ......+.++|||+++|.+..
T Consensus 187 ~~lyv~~-~~---------~~~v~v~~~~~~~~~-~----~~~~~~~~~p~~--~~~--~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 187 QYAYCVN-EL---------NSSVDVWQLKDPHGE-I----ECVQTLDMMPAD--FSD--TRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred CEEEEEe-cC---------CCEEEEEEEeCCCCC-E----EEEEEEecCCCc--CCC--CccceeEEECCCCCEEEEecC
Confidence 9865443 32 256888887642110 0 001111111111 111 001124668999998877643
Q ss_pred eCCeEEEEEEECCCCcEEEecC--CCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 003363 464 WGSSQVIISVNVSSGELLRITP--AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 464 ~~~~~~l~~vdl~tg~~~~lt~--~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 520 (826)
..+...+|.++.+++..+.+.. .........+++||+.++....... .|.+.++
T Consensus 248 ~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~---~v~v~~~ 303 (330)
T PRK11028 248 TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSH---HISVYEI 303 (330)
T ss_pred CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCC---cEEEEEE
Confidence 3455667777665554332221 1111223478899998887654332 3555544
No 146
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.15 E-value=8.7e-10 Score=135.61 Aligned_cols=234 Identities=15% Similarity=0.189 Sum_probs=134.6
Q ss_pred EEEEEEecCCCCC--CCCCcEEEEEcCCCCCCCCccchH-----HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 576 FEAIFVSSSHKKD--CSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 576 l~~~~~~P~~~~~--~~~~P~vv~~HGg~~~~~~~~~~~-----~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
++.+.|.|..... ....|.||++||.+... ..|.. ....|.++||.|+++|+.. + +... ......
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~--~~~d~~~~~s~v~~L~~~g~~v~~~d~G~-~--~~~~---~~~~~~ 120 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSA--DMWDVTRDDGAVGILHRAGLDPWVIDFGS-P--DKVE---GGMERN 120 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCCc--cceecCCcccHHHHHHHCCCEEEEEcCCC-C--ChhH---cCccCC
Confidence 5556777753211 23457899999976553 33432 3788999999999999632 1 1110 000000
Q ss_pred -cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC-CCceeEEEecCCccchhhh---------------
Q 003363 649 -SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALM--------------- 711 (826)
Q Consensus 649 -~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~--------------- 711 (826)
...+.++.++++.+.+.. .+++.++|||+||.+++.+++.+ +++++.+|+.+...|+...
T Consensus 121 l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~ 197 (994)
T PRK07868 121 LADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAAD 197 (994)
T ss_pred HHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccc
Confidence 011233444555444442 25799999999999998887744 5689988876655443110
Q ss_pred ------ccCCCCCCchhhhh-------------------ccC-cCC------ccC---C---CCCC---hhhHHHHhhcC
Q 003363 712 ------VGTTDIPDWCYVES-------------------YGS-KGK------DSF---T---ESPS---VEDLTRFHSKS 750 (826)
Q Consensus 712 ------~~~~~~~~~~~~~~-------------------~~~-~~~------~~~---~---~~~~---~~~~~~~~~~s 750 (826)
.....++.|..... +.. ... ..+ . ..+. .+....+...+
T Consensus 198 ~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n 277 (994)
T PRK07868 198 FMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHN 277 (994)
T ss_pred cchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhC
Confidence 00011122210000 000 000 000 0 0000 01111222111
Q ss_pred cc-----------cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE-EEeCCCCCCC--CCCCCHHHHHHH
Q 003363 751 PI-----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV-IVFPNDVHGI--ERPQSDFESFLN 816 (826)
Q Consensus 751 p~-----------~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~-~~~p~~~H~~--~~~~~~~~~~~~ 816 (826)
.. ..+.++++|+|+++|++|.++|+..+..+.+.+.. .++ .+++++||.. .......+.+..
T Consensus 278 ~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~a~~~~wp~ 353 (994)
T PRK07868 278 RMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQPASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSRAAQQTWPT 353 (994)
T ss_pred cccCceEEECCEEcchhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechhhhhhhChH
Confidence 11 13678999999999999999999999988877654 455 5778999973 345556688999
Q ss_pred HHHHHHHH
Q 003363 817 IGLWFKKY 824 (826)
Q Consensus 817 i~~w~~~~ 824 (826)
+.+|+.++
T Consensus 354 i~~wl~~~ 361 (994)
T PRK07868 354 VADWVKWL 361 (994)
T ss_pred HHHHHHHh
Confidence 99999875
No 147
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.14 E-value=2.7e-08 Score=110.99 Aligned_cols=273 Identities=14% Similarity=0.076 Sum_probs=159.3
Q ss_pred cEEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCceeE-EEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEK-EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~-~~~~~~~i~-~~~~~~~-~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
....++||||++|||..+.++ +...+++++ ..|+... .+..... ..+.|++||+.++|...+....
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-----------~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-----------SSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-----------EEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-----------ceEEEeCCCCEEEEEEeCcccc
Confidence 346789999999999866543 445566666 4453322 1111111 2499999999999997665321
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE--ecc-CCCCCCccceEEEeeCCCCC
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVK-GIPKSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~--~l~-~~~~~~~~~~~~wSPDg~~~ 309 (826)
.. .......||.+.+.++... .|- +.......-.+.+|+||+.
T Consensus 195 ~~---------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~- 240 (414)
T PF02897_consen 195 TS---------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRY- 240 (414)
T ss_dssp S----------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSE-
T ss_pred cc---------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccE-
Confidence 00 0012468999999877544 332 1222221446789999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccc-cCceecCCCCEEEE
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSA-FFPRFSPDGKFLVF 388 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~-~~p~~SpDG~~l~f 388 (826)
|+..+..... .+.+|++|+.... ......+.|....... ..... .|..|++
T Consensus 241 ---l~i~~~~~~~-----------~s~v~~~d~~~~~------------~~~~~~~~l~~~~~~~~~~v~~--~~~~~yi 292 (414)
T PF02897_consen 241 ---LFISSSSGTS-----------ESEVYLLDLDDGG------------SPDAKPKLLSPREDGVEYYVDH--HGDRLYI 292 (414)
T ss_dssp ---EEEEEESSSS-----------EEEEEEEECCCTT------------TSS-SEEEEEESSSS-EEEEEE--ETTEEEE
T ss_pred ---EEEEEEcccc-----------CCeEEEEeccccC------------CCcCCcEEEeCCCCceEEEEEc--cCCEEEE
Confidence 7776633221 2489999983100 0123556665433222 22222 2777888
Q ss_pred EeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeE
Q 003363 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (826)
Q Consensus 389 ~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (826)
.++.. .....|..+++...... ... .++..+.+. ..--.+...+.+|++....++..
T Consensus 293 ~Tn~~-------a~~~~l~~~~l~~~~~~----~~~---~~l~~~~~~---------~~l~~~~~~~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 293 LTNDD-------APNGRLVAVDLADPSPA----EWW---TVLIPEDED---------VSLEDVSLFKDYLVLSYRENGSS 349 (414)
T ss_dssp EE-TT--------TT-EEEEEETTSTSGG----GEE---EEEE--SSS---------EEEEEEEEETTEEEEEEEETTEE
T ss_pred eeCCC-------CCCcEEEEecccccccc----cce---eEEcCCCCc---------eeEEEEEEECCEEEEEEEECCcc
Confidence 88764 24578999998775421 000 011111110 00112344567899998999999
Q ss_pred EEEEEECC-CCcEEEecCCCC-CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 469 VIISVNVS-SGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 469 ~l~~vdl~-tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
.|..+++. +.....+..... .+.......+++.+.+..+++.+|+.+|.+++.+++
T Consensus 350 ~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 350 RLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99999998 666666654433 233334456788999999999999999999987765
No 148
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.14 E-value=3.2e-10 Score=105.11 Aligned_cols=212 Identities=15% Similarity=0.171 Sum_probs=128.3
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch---HHHHHHHHCCcEEEEEC--CCCCCCCchh--h--------
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVN--YRGSLGFGEE--A-------- 639 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vl~~d--~rG~~g~G~~--~-------- 639 (826)
.+.--+|.|+....+++.|++.++-|-.... ..|. ...+....+|++|+.|| .||..--|.+ |
T Consensus 27 ~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT~--~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGF 104 (283)
T KOG3101|consen 27 SMTFGVYLPPDAPRGKRCPVLFYLSGLTCTH--ENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGF 104 (283)
T ss_pred ceEEEEecCCCcccCCcCceEEEecCCcccc--hhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCcee
Confidence 4566688888877778899999999855432 2222 23445578999999999 5664322221 1
Q ss_pred -hhcCCCCCCc-chHHH-HHHHHHHHHH--cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC
Q 003363 640 -LQSLPGKVGS-QDVND-VLTAIDHVID--MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (826)
Q Consensus 640 -~~~~~~~~~~-~~~~D-~~~~i~~l~~--~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~ 714 (826)
.++....|.. ..+.| +..-+-.++. .-.+|+.+++|+||||||+-|+..+.+.|.+++.+.+.+|+++....
T Consensus 105 YvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~c--- 181 (283)
T KOG3101|consen 105 YVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINC--- 181 (283)
T ss_pred EEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccC---
Confidence 0011111111 11111 1111111222 22388999999999999999999889999999999999999985432
Q ss_pred CCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCccc---ccCCCCCcEEEEEeCCCCCCCcHHH--HHHHHHHHhC-
Q 003363 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS---HISKVKTPTIFLLGAQDLRVPVSNG--LQYARALREK- 788 (826)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---~~~~i~~PvLii~G~~D~~vp~~~~--~~~~~~l~~~- 788 (826)
.| |......|.+. +...|...++.. ..+....-+||-.|+.|.+.+ +|. +.+.++.+..
T Consensus 182 ----pW------GqKAf~gYLG~----~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~-~qLlPe~l~~a~~~~~ 246 (283)
T KOG3101|consen 182 ----PW------GQKAFTGYLGD----NKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA-EQLLPENLLEACKATW 246 (283)
T ss_pred ----cc------hHHHhhcccCC----ChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh-hhcChHHHHHHhhccc
Confidence 23 22112222222 233444444443 344445569999999999876 221 2344444422
Q ss_pred CCCEEEEEeCCCCCCCCC
Q 003363 789 GVETKVIVFPNDVHGIER 806 (826)
Q Consensus 789 g~~~~~~~~p~~~H~~~~ 806 (826)
..++.+...+|-+|....
T Consensus 247 ~~~v~~r~~~gyDHSYyf 264 (283)
T KOG3101|consen 247 QAPVVFRLQEGYDHSYYF 264 (283)
T ss_pred cccEEEEeecCCCcceee
Confidence 357888889999998653
No 149
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.13 E-value=1.9e-09 Score=109.79 Aligned_cols=268 Identities=12% Similarity=0.054 Sum_probs=168.5
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCC--CCeEEEEeecCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPS 230 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPD--g~~ia~~~~~~~ 230 (826)
.++...+|+||+.||..+-.+ ...+| .+.+..+.+. +..+.+ .++.|+|. +..||..+.+++
T Consensus 177 Pis~~~fS~ds~~laT~swsG-----~~kvW~~~~~~~~~~l~---gH~~~v------~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSG-----LVKVWSVPQCNLLQTLR---GHTSRV------GAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred cceeeEeecCCCeEEEeecCC-----ceeEeecCCcceeEEEe---ccccce------eeEEEccCCCccceeeeccCCc
Confidence 478889999999999876543 45555 2233333332 222223 79999998 678999998887
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
.+.+.++. .........+..-+..+.|.|++.-..+..-+..=-+||+.++..-.+. ...+-++.+.+|.|||.
T Consensus 243 vklw~~~~--e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DGS--- 316 (459)
T KOG0272|consen 243 VKLWKLSQ--ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDGS--- 316 (459)
T ss_pred eeeeccCC--CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCCCc---
Confidence 76443332 1222233345555567778888544444444555667899888654442 23344788999999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEe
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
|+.++- .++-=.++|+. .+..+..|..+...+....|||.|-.|+..+
T Consensus 317 --L~~tGG--------------lD~~~RvWDlR----------------tgr~im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 317 --LAATGG--------------LDSLGRVWDLR----------------TGRCIMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred --eeeccC--------------ccchhheeecc----------------cCcEEEEecccccceeeEeECCCceEEeecC
Confidence 554441 11122245662 3444567777888899999999999998766
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEE
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (826)
.+ +...+||+.......+.....+ -+..+.|+|++..++++++.++..+|
T Consensus 365 ~D-----------nt~kVWDLR~r~~ly~ipAH~n-------------------lVS~Vk~~p~~g~fL~TasyD~t~ki 414 (459)
T KOG0272|consen 365 SD-----------NTCKVWDLRMRSELYTIPAHSN-------------------LVSQVKYSPQEGYFLVTASYDNTVKI 414 (459)
T ss_pred CC-----------CcEEEeeecccccceecccccc-------------------hhhheEecccCCeEEEEcccCcceee
Confidence 55 4567788766444322222222 34577899977778888888888888
Q ss_pred EEEECCCCc-EEEecCCCCCeeeEEEeecCCEEEEEE
Q 003363 471 ISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 471 ~~vdl~tg~-~~~lt~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
|.-. +.. ++.|....+.+....+++|+..++..+
T Consensus 415 Ws~~--~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 415 WSTR--TWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred ecCC--CcccchhhcCCccceEEEEeccCCceEEEec
Confidence 8632 333 444444455555567788887665544
No 150
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.13 E-value=6.8e-10 Score=112.50 Aligned_cols=224 Identities=15% Similarity=0.190 Sum_probs=87.2
Q ss_pred CCcEEEEEcCCCCCCCC-ccchHHHHHHHHCCcEEEEECCCCC-CCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC--
Q 003363 591 CDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-- 666 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vl~~d~rG~-~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-- 666 (826)
...+||||-|-..+... ......++.|...||.|+.+.++-+ .|+|.... ..+++|+.++|+||+...
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL--------~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSL--------DRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--H--------HHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchh--------hhHHHHHHHHHHHHHHhhcc
Confidence 45689999883333323 3344567777778999999998863 45654432 347999999999999973
Q ss_pred CCCCCcEEEEEecchHHHHHHHHHhCC-----CceeEEEecCCccchhhhccCCCC-CCch----hhhhc---cC--c--
Q 003363 667 LANPSKVTVVGGSHGGFLTTHLIGQAP-----DKFVAAAARNPLCNLALMVGTTDI-PDWC----YVESY---GS--K-- 729 (826)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~p~~~~~~~~~~~~~-~~~~----~~~~~---~~--~-- 729 (826)
....++|+|+|||-|..-+++++.+.. ..+.++|+.+|+.|...+...... .... ..... +. .
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 135689999999999999999987642 579999999999986544322111 0000 00000 00 0
Q ss_pred ---CCccCC-CCCCh----------hhHHHHhhc----C-cccccCCCCCcEEEEEeCCCCCCCcHH-HHHHHHHHHhCC
Q 003363 730 ---GKDSFT-ESPSV----------EDLTRFHSK----S-PISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKG 789 (826)
Q Consensus 730 ---~~~~~~-~~~~~----------~~~~~~~~~----s-p~~~~~~i~~PvLii~G~~D~~vp~~~-~~~~~~~l~~~g 789 (826)
....+. ..|-. ...+.+... . -...+.++..|+|++.+++|+.||... -.++.++++..-
T Consensus 184 p~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~ 263 (303)
T PF08538_consen 184 PREFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAAT 263 (303)
T ss_dssp ----GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-------------------
T ss_pred eccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceeccccccccccccccccc
Confidence 000000 11110 000111100 0 113466788899999999999998744 345666665542
Q ss_pred C----CEEEEEeCCCCCCCCCCCCH---HHHHHHHHHHHH
Q 003363 790 V----ETKVIVFPNDVHGIERPQSD---FESFLNIGLWFK 822 (826)
Q Consensus 790 ~----~~~~~~~p~~~H~~~~~~~~---~~~~~~i~~w~~ 822 (826)
. ...--++||++|.+..+... ....+++..||+
T Consensus 264 ~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 264 NPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp ----------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccCC
Confidence 2 22345899999998765443 245666666663
No 151
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.12 E-value=1.1e-08 Score=106.71 Aligned_cols=266 Identities=17% Similarity=0.201 Sum_probs=151.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+....|+|+|+.|++....+ .+.+| ..+........... . ...+.|+|+++.|+..+.+...
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g-----~i~i~~~~~~~~~~~~~~~~~---~------i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDG-----TIKVWDLETGELLRTLKGHTG---P------VRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCc-----EEEEEEeeCCCcEEEEecCCc---c------eeEEEECCCCCEEEEEcCCCeE
Confidence 4588999999999999876432 34444 22222222221111 1 1588999999989888765533
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCcc-CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR-QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~-~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
. .|+............+........|.++ +..+.... ...|.+||+.+++..... ......+..+.|+|+++.
T Consensus 76 ~--i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~-- 149 (289)
T cd00200 76 R--LWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTF-- 149 (289)
T ss_pred E--EEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCE--
Confidence 2 2222111111112222223344556666 44443333 789999999866654431 223345778999999764
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC-cceecCCCCccccCceecCCCCEEEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~l~f~ 389 (826)
|+... .+..|+.+|+ ..+ ....+..+...+....|+|+|+.|++.
T Consensus 150 --l~~~~---------------~~~~i~i~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 195 (289)
T cd00200 150 --VASSS---------------QDGTIKLWDL-----------------RTGKCVATLTGHTGEVNSVAFSPDGEKLLSS 195 (289)
T ss_pred --EEEEc---------------CCCcEEEEEc-----------------cccccceeEecCccccceEEECCCcCEEEEe
Confidence 44333 2236888887 333 334444455567889999999988877
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEE
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (826)
+.+ ..|.+||+.++......... ...+..+.|++++. +++....++ .
T Consensus 196 ~~~-----------~~i~i~d~~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~-~~~~~~~~~--~ 242 (289)
T cd00200 196 SSD-----------GTIKLWDLSTGKCLGTLRGH-------------------ENGVNSVAFSPDGY-LLASGSEDG--T 242 (289)
T ss_pred cCC-----------CcEEEEECCCCceecchhhc-------------------CCceEEEEEcCCCc-EEEEEcCCC--c
Confidence 753 35888998764432211111 01234678999965 444443333 4
Q ss_pred EEEEECCCCcEEEe-cCCCCCeeeEEEeecCCEEEEEE
Q 003363 470 IISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 470 l~~vdl~tg~~~~l-t~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
++.+|+.+++.... ......+....++++++.++...
T Consensus 243 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred EEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEec
Confidence 56667666554443 32333445556777766555443
No 152
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.11 E-value=3.9e-11 Score=122.09 Aligned_cols=174 Identities=16% Similarity=0.228 Sum_probs=108.0
Q ss_pred cEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEe
Q 003363 622 YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 701 (826)
Q Consensus 622 ~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 701 (826)
|.|+++|.||.+..... ..........+|+.+.++.+++.- ..+++.++||||||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREAL--GIKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHH--TTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHh--CCCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 68999999995543210 002233446889999999999873 345699999999999999999999999999999
Q ss_pred cCCcc--c-hh--hhccC----CCCC----C------------ch----hhhhc-cCcCC-----ccCCCC--CChh---
Q 003363 702 RNPLC--N-LA--LMVGT----TDIP----D------------WC----YVESY-GSKGK-----DSFTES--PSVE--- 741 (826)
Q Consensus 702 ~~p~~--~-~~--~~~~~----~~~~----~------------~~----~~~~~-~~~~~-----~~~~~~--~~~~--- 741 (826)
.++.. . .. ..... .... . +. ..... ..... ..+... ....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 99851 0 00 00000 0000 0 00 00000 00000 000000 0000
Q ss_pred ---hHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 742 ---DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 742 ---~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
....+...++...+.++++|+|+++|++|..+|+.....+.+.+.+ .++++++++||...
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~----~~~~~~~~~GH~~~ 217 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIPN----SQLVLIEGSGHFAF 217 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHSTT----EEEEEETTCCSTHH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcCC----CEEEECCCCChHHH
Confidence 0011122233455678999999999999999999998887666655 89999999999764
No 153
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.10 E-value=1.8e-08 Score=98.18 Aligned_cols=263 Identities=14% Similarity=0.156 Sum_probs=163.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+-+...-|++|+++|+..+.++ .+.||+. .+....+.++. .|+...++||.|+.||...-+..-
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDG-----klIvWDs~TtnK~haipl~s---------~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDG-----KLIVWDSFTTNKVHAIPLPS---------SWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred cceeeeEecCCcCeEEeeccCC-----eEEEEEcccccceeEEecCc---------eeEEEEEECCCCCeEEecCcCcee
Confidence 4588999999999999887665 6778853 33334444432 256899999999999986543311
Q ss_pred CCCCccCC------CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEee-
Q 003363 232 SKPTFSLG------STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP- 304 (826)
Q Consensus 232 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP- 304 (826)
. .+... ..+..+....+..|..--.|.+| +..+++.++....+||+++|+..... ......+-.+..+|
T Consensus 122 s--iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~ 197 (343)
T KOG0286|consen 122 S--IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPS 197 (343)
T ss_pred E--EEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCC
Confidence 0 11111 01112234455666555567766 77888889999999999999876652 22233567889999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCC
Q 003363 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 384 (826)
Q Consensus 305 Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~ 384 (826)
|++. .+..+ | +..-+++|+. ++.-.+....+...+...+|-|+|.
T Consensus 198 ~~nt----FvSg~------------c---D~~aklWD~R----------------~~~c~qtF~ghesDINsv~ffP~G~ 242 (343)
T KOG0286|consen 198 DGNT----FVSGG------------C---DKSAKLWDVR----------------SGQCVQTFEGHESDINSVRFFPSGD 242 (343)
T ss_pred CCCe----EEecc------------c---ccceeeeecc----------------CcceeEeecccccccceEEEccCCC
Confidence 8887 54444 1 1245667762 3334455566677899999999999
Q ss_pred EEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe
Q 003363 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (826)
Q Consensus 385 ~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (826)
.++-.+.+ ....++|+..+....+-... .. ..++.++.||..|+.| |...
T Consensus 243 afatGSDD-----------~tcRlyDlRaD~~~a~ys~~------------~~-----~~gitSv~FS~SGRlL-fagy- 292 (343)
T KOG0286|consen 243 AFATGSDD-----------ATCRLYDLRADQELAVYSHD------------SI-----ICGITSVAFSKSGRLL-FAGY- 292 (343)
T ss_pred eeeecCCC-----------ceeEEEeecCCcEEeeeccC------------cc-----cCCceeEEEcccccEE-Eeee-
Confidence 77655543 23566777776543222111 11 1145688999999855 4433
Q ss_pred CCeEEEEEEECCCCcEEEecCC-CCCeeeEEEeecCC
Q 003363 465 GSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGD 500 (826)
Q Consensus 465 ~~~~~l~~vdl~tg~~~~lt~~-~~~~~~~~~s~dg~ 500 (826)
.+..+.++|.-.++..-+..+ ..-++-..++|||-
T Consensus 293 -~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 293 -DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGM 328 (343)
T ss_pred -cCCceeEeeccccceEEEeeccCCeeEEEEECCCCc
Confidence 334555667555655544433 33456667777774
No 154
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.10 E-value=4.2e-09 Score=118.01 Aligned_cols=283 Identities=13% Similarity=0.120 Sum_probs=173.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+....+||||+.++...... +..+|. .... .+.....+.+-. +..+.|||||+.|+-.+.+.+.
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~-----~i~~~~~~~~~~-~~~~~l~~h~~~------v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDG-----LIRIWKLEGIKS-NLLRELSGHTRG------VSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCC-----cEEEeecccccc-hhhccccccccc------eeeeEECCCCcEEEEecCCceE
Confidence 3577789999999988875543 566662 2221 111111222222 3799999999999998888876
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
+.+.. .......+...+|..++....|.++.-....+..+..+.+||+.+++..... ......+..++|++||+.
T Consensus 228 riwd~-~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~--- 302 (456)
T KOG0266|consen 228 RIWDL-KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNL--- 302 (456)
T ss_pred EEeec-cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCE---
Confidence 54333 1223445666788999999999999656667778899999999998866551 233346778899999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc---eecCCCCc--cccCceecCCCCEE
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESIS--SAFFPRFSPDGKFL 386 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~Lt~~~~--~~~~p~~SpDG~~l 386 (826)
|+-.+ .+..|.++|+ .++.. ..+..... ......|||+|++|
T Consensus 303 -l~s~s---------------~d~~i~vwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 303 -LVSAS---------------YDGTIRVWDL-----------------ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL 349 (456)
T ss_pred -EEEcC---------------CCccEEEEEC-----------------CCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence 76654 2347889998 66662 34443333 36888999999998
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (826)
+-...+ ..|.+||+..+............ .+ -...+..+++|+.++ +...
T Consensus 350 l~~~~d-----------~~~~~w~l~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~~~i~-sg~~-- 399 (456)
T KOG0266|consen 350 LSASLD-----------RTLKLWDLRSGKSVGTYTGHSNL--------------VR--CIFSPTLSTGGKLIY-SGSE-- 399 (456)
T ss_pred EEecCC-----------CeEEEEEccCCcceeeecccCCc--------------ce--eEecccccCCCCeEE-EEeC--
Confidence 755543 45888888765543221111100 00 112334477887554 3333
Q ss_pred eEEEEEEECCCCcEEEecCCC--CCeeeEEEeecCCEEEEEEeCCCCCCeEE
Q 003363 467 SQVIISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSSSPVDVPQVK 516 (826)
Q Consensus 467 ~~~l~~vdl~tg~~~~lt~~~--~~~~~~~~s~dg~~l~~~~s~~~~p~~l~ 516 (826)
+..++.+|+.++...+..... ..+....+.+..+.+.......+....+|
T Consensus 400 d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 400 DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence 345666677766555444333 33333455555655554444444433333
No 155
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.10 E-value=2.4e-08 Score=96.80 Aligned_cols=222 Identities=14% Similarity=0.107 Sum_probs=136.4
Q ss_pred ceeEEEEEEeecCCCC----ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEe-cC
Q 003363 125 RKKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VP 197 (826)
Q Consensus 125 ~~~~l~~~~i~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~-~~ 197 (826)
+++.+.++.+..++.+ .++|+... ..+...+.|+||++.+-.+-++ ...+| ..++..+.+. ..
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~GHs-----H~v~dv~~s~dg~~alS~swD~-----~lrlWDl~~g~~t~~f~GH~ 105 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTGHS-----HFVSDVVLSSDGNFALSASWDG-----TLRLWDLATGESTRRFVGHT 105 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeeccc-----eEecceEEccCCceEEeccccc-----eEEEEEecCCcEEEEEEecC
Confidence 3456666666544322 35555533 3588899999999887654433 67788 3445554443 34
Q ss_pred CCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEE
Q 003363 198 QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV 277 (826)
Q Consensus 198 ~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v 277 (826)
..+ .++++|||.++|+..+ ++..|.+
T Consensus 106 ~dV----------lsva~s~dn~qivSGS--------------------------------------------rDkTikl 131 (315)
T KOG0279|consen 106 KDV----------LSVAFSTDNRQIVSGS--------------------------------------------RDKTIKL 131 (315)
T ss_pred Cce----------EEEEecCCCceeecCC--------------------------------------------Ccceeee
Confidence 444 7999999999998754 3457889
Q ss_pred EEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcC
Q 003363 278 ININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 357 (826)
Q Consensus 278 ~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 357 (826)
||.-++....+....+..-+..+.|+|.... .++++.. -+..+.++|+
T Consensus 132 wnt~g~ck~t~~~~~~~~WVscvrfsP~~~~----p~Ivs~s-------------~DktvKvWnl--------------- 179 (315)
T KOG0279|consen 132 WNTLGVCKYTIHEDSHREWVSCVRFSPNESN----PIIVSAS-------------WDKTVKVWNL--------------- 179 (315)
T ss_pred eeecccEEEEEecCCCcCcEEEEEEcCCCCC----cEEEEcc-------------CCceEEEEcc---------------
Confidence 9988776555521111446778999998644 3333311 1226778887
Q ss_pred CCCCCcce-ecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCC
Q 003363 358 SSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 436 (826)
Q Consensus 358 ~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (826)
.+-+.+ ....+.+......+||||..++... ....+++||++.++... +.+..+
T Consensus 180 --~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg-----------kdg~~~LwdL~~~k~ly-sl~a~~----------- 234 (315)
T KOG0279|consen 180 --RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG-----------KDGEAMLWDLNEGKNLY-SLEAFD----------- 234 (315)
T ss_pred --CCcchhhccccccccEEEEEECCCCCEEecCC-----------CCceEEEEEccCCceeE-eccCCC-----------
Confidence 444443 4455677888999999999877522 23578999998766521 111111
Q ss_pred CCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003363 437 CFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (826)
Q Consensus 437 ~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~ 479 (826)
.+..++|+|+--.| .... +.. |-.+|++++.
T Consensus 235 --------~v~sl~fspnrywL-~~at-~~s--IkIwdl~~~~ 265 (315)
T KOG0279|consen 235 --------IVNSLCFSPNRYWL-CAAT-ATS--IKIWDLESKA 265 (315)
T ss_pred --------eEeeEEecCCceeE-eecc-CCc--eEEEeccchh
Confidence 23477899985333 3322 222 4555666654
No 156
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.10 E-value=1.9e-09 Score=109.91 Aligned_cols=234 Identities=13% Similarity=0.100 Sum_probs=151.2
Q ss_pred cccEEEEeCCC--CCeEEEEecCCCCCCeEEEEecCC---ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeec
Q 003363 154 TGASAVVPSPS--GSKLLVVRNPENESPIQFELWSQS---QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (826)
Q Consensus 154 ~~~~~~~~SPd--G~~la~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~ 228 (826)
..+....|+|. +..||..+.++ ...+|.-. ....++.....+ ..++|.|+|++|+..+.+
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dg-----tvklw~~~~e~~l~~l~gH~~RV----------s~VafHPsG~~L~TasfD 282 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADG-----TVKLWKLSQETPLQDLEGHLARV----------SRVAFHPSGKFLGTASFD 282 (459)
T ss_pred cceeeEEEccCCCccceeeeccCC-----ceeeeccCCCcchhhhhcchhhh----------eeeeecCCCceeeecccc
Confidence 56889999998 66777766543 45666222 222222222233 799999999999999988
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCC-ccceEEEeeCCC
Q 003363 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNE 307 (826)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~-~~~~~~wSPDg~ 307 (826)
.+-+ .|+...+.+......+..-....+|.+|+.-..++.-+.-=.|||+.+|.-.-. ..++. .+-.+.|||+|-
T Consensus 283 ~tWR--lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~--L~gH~k~I~~V~fsPNGy 358 (459)
T KOG0272|consen 283 STWR--LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF--LAGHIKEILSVAFSPNGY 358 (459)
T ss_pred cchh--hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE--ecccccceeeEeECCCce
Confidence 7655 556666677777777888888889999943333443445567899999876654 33333 677899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecC-CCCEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP-DGKFL 386 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp-DG~~l 386 (826)
. |+-.+ .++.+.++|+. .......+..+..-+..++|+| -|++|
T Consensus 359 ~----lATgs---------------~Dnt~kVWDLR----------------~r~~ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 359 H----LATGS---------------SDNTCKVWDLR----------------MRSELYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred E----EeecC---------------CCCcEEEeeec----------------ccccceecccccchhhheEecccCCeEE
Confidence 8 87766 23355566662 3334566667777789999999 56667
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (826)
+..+.+ +.+.+|.-.+........+.+ .-+.++..++||+.| .++..+.
T Consensus 404 ~TasyD-----------~t~kiWs~~~~~~~ksLaGHe-------------------~kV~s~Dis~d~~~i-~t~s~DR 452 (459)
T KOG0272|consen 404 VTASYD-----------NTVKIWSTRTWSPLKSLAGHE-------------------GKVISLDISPDSQAI-ATSSFDR 452 (459)
T ss_pred EEcccC-----------cceeeecCCCcccchhhcCCc-------------------cceEEEEeccCCceE-EEeccCc
Confidence 655544 235555544444433222222 123466788999855 5666666
Q ss_pred eEEEEE
Q 003363 467 SQVIIS 472 (826)
Q Consensus 467 ~~~l~~ 472 (826)
...||.
T Consensus 453 T~KLW~ 458 (459)
T KOG0272|consen 453 TIKLWR 458 (459)
T ss_pred eeeecc
Confidence 666663
No 157
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.06 E-value=2.1e-07 Score=98.22 Aligned_cols=125 Identities=15% Similarity=0.130 Sum_probs=73.8
Q ss_pred cCceecC-CCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeecc--CCCCCcccccCCCCCCcc
Q 003363 375 FFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFPGLYSSSILSNPW 451 (826)
Q Consensus 375 ~~p~~Sp-DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~g~~~~~~~~~~w 451 (826)
..|.|++ ||+ .+|.+.. ..|+.+|+.+.+..... ...++... .++--|| +...+++
T Consensus 197 ~rP~~~~~dg~-~~~vs~e-----------G~V~~id~~~~~~~~~~-----~~~~~~~~~~~~~wrP~----g~q~ia~ 255 (352)
T TIGR02658 197 NHPAYSNKSGR-LVWPTYT-----------GKIFQIDLSSGDAKFLP-----AIEAFTEAEKADGWRPG----GWQQVAY 255 (352)
T ss_pred cCCceEcCCCc-EEEEecC-----------CeEEEEecCCCcceecc-----eeeeccccccccccCCC----cceeEEE
Confidence 5567788 775 5677765 45999998775543211 11111111 1111222 2223789
Q ss_pred ccCCCEEEEEEEe-------CCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEe-CCCCCCeEEEEeeccc
Q 003363 452 LSDGCTMLLSSIW-------GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS-SPVDVPQVKYGYFVDK 523 (826)
Q Consensus 452 s~Dg~~l~~~~~~-------~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s-~~~~p~~l~~~~~~~~ 523 (826)
++||+++|+.... .+...++.+|..++++..-..-........+++|++.++++.+ .... |.++|..+.
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~---VsViD~~t~ 332 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT---LYIFDAETG 332 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc---EEEEECcCC
Confidence 9999999886531 1235899999999887754333233445689999994444443 3333 778886544
No 158
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.05 E-value=1.7e-07 Score=101.34 Aligned_cols=285 Identities=17% Similarity=0.166 Sum_probs=152.0
Q ss_pred eEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecC--CCCCCeEEEEecC-CceeEEEecC-CCccc
Q 003363 127 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP--ENESPIQFELWSQ-SQLEKEFHVP-QTVHG 202 (826)
Q Consensus 127 ~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~--~~~~~~~~~i~~~-~~~~~~~~~~-~~~~g 202 (826)
+.|+.+.++...++...+.... .....+..+++|++++|+.+.+. +.+.-..|.+... +.+..+-... .+. +
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~---~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~-~ 88 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA---EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS-S 88 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE---ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS-C
T ss_pred CcEEEEEEcCCCCCceEeeeec---CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC-C
Confidence 4566666655555443332111 11346778889999988777664 2344455555644 6665555443 121 0
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC
Q 003363 203 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 282 (826)
Q Consensus 203 ~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~ 282 (826)
-..++.+|||+.|+.+.- ....+.+++++.
T Consensus 89 -------p~~i~~~~~g~~l~vany-------------------------------------------~~g~v~v~~l~~ 118 (345)
T PF10282_consen 89 -------PCHIAVDPDGRFLYVANY-------------------------------------------GGGSVSVFPLDD 118 (345)
T ss_dssp -------EEEEEECTTSSEEEEEET-------------------------------------------TTTEEEEEEECT
T ss_pred -------cEEEEEecCCCEEEEEEc-------------------------------------------cCCeEEEEEccC
Confidence 036789999997766422 124566666654
Q ss_pred -CceEecc--------CC----CCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 283 -GEVQAVK--------GI----PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 283 -g~~~~l~--------~~----~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
|.+.... +. .......++.|+|||+. + |+.+.. ...|+.++++.
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~----v-~v~dlG-------------~D~v~~~~~~~----- 175 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF----V-YVPDLG-------------ADRVYVYDIDD----- 175 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE----E-EEEETT-------------TTEEEEEEE-T-----
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCE----E-EEEecC-------------CCEEEEEEEeC-----
Confidence 4443321 00 11234557899999996 5 554322 22577777631
Q ss_pred hhhhhhcCCCCCCcce-----ecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccccee
Q 003363 350 SELELKESSSEDLPVV-----NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (826)
Q Consensus 350 ~~~~~~~~~~~~~~~~-----~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 424 (826)
.+++.. .+.. ....+...|+|||++++...... +.|.++++...... + ...
T Consensus 176 ----------~~~~l~~~~~~~~~~-G~GPRh~~f~pdg~~~Yv~~e~s----------~~v~v~~~~~~~g~-~--~~~ 231 (345)
T PF10282_consen 176 ----------DTGKLTPVDSIKVPP-GSGPRHLAFSPDGKYAYVVNELS----------NTVSVFDYDPSDGS-L--TEI 231 (345)
T ss_dssp ----------TS-TEEEEEEEECST-TSSEEEEEE-TTSSEEEEEETTT----------TEEEEEEEETTTTE-E--EEE
T ss_pred ----------CCceEEEeecccccc-CCCCcEEEEcCCcCEEEEecCCC----------CcEEEEeecccCCc-e--eEE
Confidence 222221 2222 23367788999999865544332 56777776621110 0 000
Q ss_pred eeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC--C-CeeeEEEeecCCE
Q 003363 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--S-NFSWSLLTLDGDN 501 (826)
Q Consensus 425 ~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~--~-~~~~~~~s~dg~~ 501 (826)
..+... +. .+.+. .....+.++|||++||++....+...+|.+|..+|+++.+..-. + ......++++|+.
T Consensus 232 ~~~~~~--~~--~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~ 305 (345)
T PF10282_consen 232 QTISTL--PE--GFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRY 305 (345)
T ss_dssp EEEESC--ET--TSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSE
T ss_pred EEeeec--cc--ccccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCE
Confidence 111111 11 11110 02236678999999988766667778888888888887764321 2 2344577889998
Q ss_pred EEEEEeCCCCCCeEEEEeec
Q 003363 502 IIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 502 l~~~~s~~~~p~~l~~~~~~ 521 (826)
++......+. |.+++..
T Consensus 306 l~Va~~~s~~---v~vf~~d 322 (345)
T PF10282_consen 306 LYVANQDSNT---VSVFDID 322 (345)
T ss_dssp EEEEETTTTE---EEEEEEE
T ss_pred EEEEecCCCe---EEEEEEe
Confidence 7776655444 5555543
No 159
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.05 E-value=1.6e-08 Score=104.66 Aligned_cols=268 Identities=15% Similarity=0.172 Sum_probs=162.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
.++....|+-||..||+....+ ..++| ..|....... ...|.| -.+.|+-+|.+|+-..-+++.-
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G-----~~riw~~~G~l~~tl~---~HkgPI------~slKWnk~G~yilS~~vD~tti 301 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDG-----EARIWNKDGNLISTLG---QHKGPI------FSLKWNKKGTYILSGGVDGTTI 301 (524)
T ss_pred CCcceEEecCCCCeEEEeecCc-----EEEEEecCchhhhhhh---ccCCce------EEEEEcCCCCEEEeccCCccEE
Confidence 5689999999999999987765 68888 4554443332 223334 7999999999999887666543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.|+...+.......-+....-.++|..+ .+-........|+|+-+....+. .+ +..+..+..+.|.|.|+-
T Consensus 302 --lwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~--~GH~g~V~alk~n~tg~L--- 373 (524)
T KOG0273|consen 302 --LWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTF--IGHHGEVNALKWNPTGSL--- 373 (524)
T ss_pred --EEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceee--ecccCceEEEEECCCCce---
Confidence 2332111111111111111122334332 12222234456888777655443 33 335567788999999996
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCC-------
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK------- 384 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~------- 384 (826)
|+-.+. +..|-++... +++....|..+...+....|||+|.
T Consensus 374 -LaS~Sd---------------D~TlkiWs~~----------------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 374 -LASCSD---------------DGTLKIWSMG----------------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred -EEEecC---------------CCeeEeeecC----------------CCcchhhhhhhccceeeEeecCCCCccCCCcC
Confidence 665552 2245555541 4556677777777788899999986
Q ss_pred --EEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEE
Q 003363 385 --FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (826)
Q Consensus 385 --~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (826)
.|+..+.+ ..+.+||...+........ +...+..++|||||++++ +.
T Consensus 422 ~~~l~sas~d-----------stV~lwdv~~gv~i~~f~k-------------------H~~pVysvafS~~g~ylA-sG 470 (524)
T KOG0273|consen 422 NLMLASASFD-----------STVKLWDVESGVPIHTLMK-------------------HQEPVYSVAFSPNGRYLA-SG 470 (524)
T ss_pred CceEEEeecC-----------CeEEEEEccCCceeEeecc-------------------CCCceEEEEecCCCcEEE-ec
Confidence 23333322 4577777766554321101 112456889999999774 33
Q ss_pred EeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 463 IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 463 ~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
+.++...|| +..++++.+-..+.+.+....|+.+|+.+....+.
T Consensus 471 s~dg~V~iw--s~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 471 SLDGCVHIW--STKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred CCCCeeEec--cccchheeEeecCCCeEEEEEEcCCCCEEEEEecC
Confidence 444555555 56688877766666666677889999877766654
No 160
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.05 E-value=2.5e-09 Score=101.24 Aligned_cols=239 Identities=17% Similarity=0.150 Sum_probs=136.4
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
.||..+.+..|... ++.+-.+.+-|+.+. ....|...++.++.+||.|+++||||.+++-..........+.+.
T Consensus 13 ~DG~~l~~~~~pA~-----~~~~g~~~va~a~Gv-~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~Dw 86 (281)
T COG4757 13 PDGYSLPGQRFPAD-----GKASGRLVVAGATGV-GQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDW 86 (281)
T ss_pred CCCccCccccccCC-----CCCCCcEEecccCCc-chhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchhhh
Confidence 46777877777432 233333444454433 234677788899999999999999997665433322222333344
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEE-EecCC--ccchhhh-ccCCCCCCchhhhhc
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA-AARNP--LCNLALM-VGTTDIPDWCYVESY 726 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~-v~~~p--~~~~~~~-~~~~~~~~~~~~~~~ 726 (826)
...|+.++++++.+.. ..-+...+|||+||.+...+ .+++ ++.++ +..++ ...+... ...--...|+.....
T Consensus 87 A~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~-~~~~-k~~a~~vfG~gagwsg~m~~~~~l~~~~l~~lv~p~ 162 (281)
T COG4757 87 ARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLL-GQHP-KYAAFAVFGSGAGWSGWMGLRERLGAVLLWNLVGPP 162 (281)
T ss_pred hhcchHHHHHHHHhhC--CCCceEEeeccccceeeccc-ccCc-ccceeeEeccccccccchhhhhcccceeeccccccc
Confidence 5679999999998852 34578999999999876544 4556 33332 22221 1111000 000000001100000
Q ss_pred ----cCcCCccCCC----CCC--hhhHHHHhhc------Ccc-----cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHH
Q 003363 727 ----GSKGKDSFTE----SPS--VEDLTRFHSK------SPI-----SHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 785 (826)
Q Consensus 727 ----~~~~~~~~~~----~~~--~~~~~~~~~~------sp~-----~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l 785 (826)
.......+.+ .|. ..++..+-+. +|. +...++.+|++.+...+|+.+|+...+.+.+..
T Consensus 163 lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~As~d~f~~~y 242 (281)
T COG4757 163 LTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPPASRDAFASFY 242 (281)
T ss_pred hhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCHHHHHHHHHhh
Confidence 0000000111 111 1222222222 221 234567899999999999999999999888887
Q ss_pred HhCCCCEEEEEeCCC----CCCCCCCCCHHHHHHHHHHHH
Q 003363 786 REKGVETKVIVFPND----VHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 786 ~~~g~~~~~~~~p~~----~H~~~~~~~~~~~~~~i~~w~ 821 (826)
+++ ++++..++.+ ||.-...+..+..++++++||
T Consensus 243 ~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 243 RNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred hcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 764 6777777765 787544444456788899987
No 161
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.04 E-value=4.5e-10 Score=128.28 Aligned_cols=128 Identities=25% Similarity=0.286 Sum_probs=92.7
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHH-CC-cEEEEECCC-CCCCCchhhhhcCCCCCCcchH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VG-YSLLIVNYR-GSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~G-~~Vl~~d~r-G~~g~G~~~~~~~~~~~~~~~~ 652 (826)
+...++.|......++.|+||++|||++........ ....|+. .+ ++|+.+||| |..|+........++ ...+
T Consensus 79 l~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~---n~g~ 154 (493)
T cd00312 79 LYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPG---NYGL 154 (493)
T ss_pred CeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCc---chhH
Confidence 555788887543467889999999998765544332 2344444 33 999999999 666665443222233 3347
Q ss_pred HHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCccc
Q 003363 653 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 707 (826)
Q Consensus 653 ~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~~ 707 (826)
.|+..+++|+.++ ...|+++|.|+|+|+||+++.+++.. .+.+|+++|+.++...
T Consensus 155 ~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 155 KDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred HHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 8999999999875 34799999999999999999988775 2457999999887654
No 162
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.04 E-value=1.2e-07 Score=99.57 Aligned_cols=205 Identities=17% Similarity=0.158 Sum_probs=117.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc--------eeEEEecCCCccccccCCCcccceeecCCCCeEEEE
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ--------LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 225 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~ 225 (826)
+.+...+|++||++|+.+.+.. +.-...-+|+.|. .+++..+..... -.|..+.=|-|+. ++|-
T Consensus 104 G~I~Di~Wd~ds~RI~avGEGr-erfg~~F~~DSG~SvGei~GhSr~ins~~~Kps------RPfRi~T~sdDn~-v~ff 175 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVGEGR-ERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS------RPFRIATGSDDNT-VAFF 175 (603)
T ss_pred cccccceeCCCCcEEEEEecCc-cceeEEEEecCCCccceeeccceeEeeeeccCC------CceEEEeccCCCe-EEEe
Confidence 5688999999999999987765 4444555664432 233322221110 1233444444443 4443
Q ss_pred eecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCC-CccCceEEEEEccCCceE-ecc-CCCCCCccceEEE
Q 003363 226 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYA-GKRQPSLFVININSGEVQ-AVK-GIPKSLSVGQVVW 302 (826)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~-~~~~~~l~v~d~~~g~~~-~l~-~~~~~~~~~~~~w 302 (826)
--.+ .+-.....+|..+....+|+|| |+.+. ...+..++++|-.+|+.. .+. ..+...++..++|
T Consensus 176 eGPP-----------FKFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW 243 (603)
T KOG0318|consen 176 EGPP-----------FKFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW 243 (603)
T ss_pred eCCC-----------eeeeecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE
Confidence 1111 2233445567778889999999 66654 345688999998888754 442 1233446778999
Q ss_pred eeCCCCCccEEEEEeecCcce----------------------eeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCC
Q 003363 303 APLNEGLHQYLVFVGWSSETR----------------------KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 360 (826)
Q Consensus 303 SPDg~~~~~~lvf~~~~~~~~----------------------~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 360 (826)
|||+++ ++-++-+..-+ .+|..| ...+|..+.+...-+ +. ...+
T Consensus 244 sPDs~~----~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW---qkd~lItVSl~G~in--~l-----n~~d 309 (603)
T KOG0318|consen 244 SPDSTQ----FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW---QKDHLITVSLSGTIN--YL-----NPSD 309 (603)
T ss_pred CCCCce----EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE---eCCeEEEEEcCcEEE--Ee-----cccC
Confidence 999999 88776433211 122222 122343333310000 00 0002
Q ss_pred CCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 361 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 361 ~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
....+.+..+...+.....||||++|+-.+.+
T Consensus 310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 310 PSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred CChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 22445566677788899999999998776655
No 163
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.04 E-value=1.5e-09 Score=117.07 Aligned_cols=190 Identities=18% Similarity=0.196 Sum_probs=101.5
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCC------chhh-hhc-------------CCCCCCc
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF------GEEA-LQS-------------LPGKVGS 649 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~------G~~~-~~~-------------~~~~~~~ 649 (826)
+++|+|||-||-++. ...|...+..||++||+|++++.|-.... .... ... +......
T Consensus 98 ~~~PvvIFSHGlgg~--R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGS--RTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--TT----TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCCCcc--hhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 779999999996655 56788999999999999999999953221 1110 000 0000000
Q ss_pred -----------chHHHHHHHHHHHHHc--------------------CCCCCCcEEEEEecchHHHHHHHHHhCCCceeE
Q 003363 650 -----------QDVNDVLTAIDHVIDM--------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 698 (826)
Q Consensus 650 -----------~~~~D~~~~i~~l~~~--------------------~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a 698 (826)
.-..|+..+++.|.+. +.+|.++|+++|||+||..++.++.+. .+|++
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~~ 254 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFKA 254 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--E
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcce
Confidence 1134666677666531 236788999999999999999888764 78999
Q ss_pred EEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHH
Q 003363 699 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG 778 (826)
Q Consensus 699 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~ 778 (826)
+|+..|..- |..+ .....++.|+|+|+.+. +.-..+.
T Consensus 255 ~I~LD~W~~------------------------------Pl~~-----------~~~~~i~~P~L~InSe~--f~~~~~~ 291 (379)
T PF03403_consen 255 GILLDPWMF------------------------------PLGD-----------EIYSKIPQPLLFINSES--FQWWENI 291 (379)
T ss_dssp EEEES---T------------------------------TS-G-----------GGGGG--S-EEEEEETT--T--HHHH
T ss_pred EEEeCCccc------------------------------CCCc-----------ccccCCCCCEEEEECcc--cCChhhH
Confidence 998887431 0000 00134678999998875 2222333
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCCCCC------CC------------CC----HHHHHHHHHHHHHHHcC
Q 003363 779 LQYARALREKGVETKVIVFPNDVHGIE------RP------------QS----DFESFLNIGLWFKKYCK 826 (826)
Q Consensus 779 ~~~~~~l~~~g~~~~~~~~p~~~H~~~------~~------------~~----~~~~~~~i~~w~~~~l~ 826 (826)
..+.+ +...+....++.+.|..|.-. .+ .+ .....+.+++||++||+
T Consensus 292 ~~~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 292 FRMKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp HHHHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 33332 333455678899999999521 11 01 12334568899999974
No 164
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.03 E-value=2.6e-08 Score=108.59 Aligned_cols=246 Identities=17% Similarity=0.231 Sum_probs=142.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEE--ecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEF--HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
.+...++||||+.||...+++ ...+|+ .....-+| +.+.++ .++.|+.+|+.|+..+-+++.
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDg-----KVKvWn~~SgfC~vTFteHts~V----------t~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDG-----KVKVWNTQSGFCFVTFTEHTSGV----------TAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred ceeeEEECCCCcEEEeccCCC-----cEEEEeccCceEEEEeccCCCce----------EEEEEEecCCEEEEeecCCeE
Confidence 578899999999999865543 577884 33233333 334444 799999999999999999988
Q ss_pred CCCCccC--CCCCCC---CCCccCCCCCCcceeecCCCccCCC--ccCceEEEEEccCCceEeccCCCC-CCccceEEEe
Q 003363 232 SKPTFSL--GSTKGG---SSDKDCNSWKGQGDWEEDWGETYAG--KRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWA 303 (826)
Q Consensus 232 ~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~d~g~~~~~--~~~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wS 303 (826)
+.+.+.. .+..-. +....+... .+. |+.... .....||||++++|+...+ ..+ +..+...+|+
T Consensus 417 RAwDlkRYrNfRTft~P~p~Qfscvav------D~s-GelV~AG~~d~F~IfvWS~qTGqllDi--LsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTSPEPIQFSCVAV------DPS-GELVCAGAQDSFEIFVWSVQTGQLLDI--LSGHEGPVSGLSFS 487 (893)
T ss_pred EeeeecccceeeeecCCCceeeeEEEE------cCC-CCEEEeeccceEEEEEEEeecCeeeeh--hcCCCCcceeeEEc
Confidence 7654431 111111 111111111 111 232211 1346899999999998766 333 4467788999
Q ss_pred eCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCC
Q 003363 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDG 383 (826)
Q Consensus 304 PDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG 383 (826)
|+|.. |+..+|+.. +.++|+=. ..++...|.- ...+....|+|||
T Consensus 488 ~~~~~----LaS~SWDkT---------------VRiW~if~---------------s~~~vEtl~i-~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 488 PDGSL----LASGSWDKT---------------VRIWDIFS---------------SSGTVETLEI-RSDVLAVSFRPDG 532 (893)
T ss_pred cccCe----EEeccccce---------------EEEEEeec---------------cCceeeeEee-ccceeEEEEcCCC
Confidence 99998 988887543 33444300 3334444432 2346788999999
Q ss_pred CEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccccee---------eeeeeeeccCCCCCcccccCCCCCCccccC
Q 003363 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV---------DVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (826)
Q Consensus 384 ~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (826)
+.|+...-+. +|-.||...+..+-...+.. +.+..-+......| ..+++|+|
T Consensus 533 ~elaVaTldg-----------qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F--------tti~ySaD 593 (893)
T KOG0291|consen 533 KELAVATLDG-----------QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF--------TTICYSAD 593 (893)
T ss_pred CeEEEEEecc-----------eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCce--------EEEEEcCC
Confidence 9999887662 45566654332211111110 11111111112233 37789999
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 455 GCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 455 g~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
|+.|+.. +....+..+++.++-+.
T Consensus 594 G~~IlAg---G~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 594 GKCILAG---GESNSICIYDVPEGVLL 617 (893)
T ss_pred CCEEEec---CCcccEEEEECchhhee
Confidence 9976543 23345666677676543
No 165
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.03 E-value=2.5e-08 Score=104.03 Aligned_cols=269 Identities=14% Similarity=0.161 Sum_probs=148.6
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
.++|+++.+++... ...+.++++.... ....+.... ..+....|+|+|+.|++....+ .+
T Consensus 16 ~~~~~~~~l~~~~~---------~g~i~i~~~~~~~-~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~~~-----~i 75 (289)
T cd00200 16 AFSPDGKLLATGSG---------DGTIKVWDLETGE-LLRTLKGHT-----GPVRDVAASADGTYLASGSSDK-----TI 75 (289)
T ss_pred EEcCCCCEEEEeec---------CcEEEEEEeeCCC-cEEEEecCC-----cceeEEEECCCCCEEEEEcCCC-----eE
Confidence 44889888876532 3355666654321 222222222 3356899999999888876532 34
Q ss_pred EEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 183 ELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 183 ~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
.+|+ .++......... +. +..+.|+|+++.|+....+.... .|+............+........|.
T Consensus 76 ~i~~~~~~~~~~~~~~~~---~~------i~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 76 RLWDLETGECVRTLTGHT---SY------VSSVAFSPDGRILSSSSRDKTIK--VWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred EEEEcCcccceEEEeccC---Cc------EEEEEEcCCCCEEEEecCCCeEE--EEECCCcEEEEEeccCCCcEEEEEEc
Confidence 4552 222222222111 11 27899999987666554333221 22221111111122233334456677
Q ss_pred cCCCccCCCcc-CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 261 EDWGETYAGKR-QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 261 ~d~g~~~~~~~-~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
++ +..+.... ...|++||+.+++..... ......+..+.|+|+++. |++.+. +..|..
T Consensus 145 ~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~~---------------~~~i~i 203 (289)
T cd00200 145 PD-GTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEK----LLSSSS---------------DGTIKL 203 (289)
T ss_pred Cc-CCEEEEEcCCCcEEEEEccccccceeE-ecCccccceEEECCCcCE----EEEecC---------------CCcEEE
Confidence 76 34433333 788999999877654431 222336778999999987 877762 336888
Q ss_pred EEcccccchhhhhhhhcCCCCCCcc-eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCC
Q 003363 340 VRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 418 (826)
+|+ ..+.. ..+..+...+....|+||++.++..+.+ ..|++||+.++....
T Consensus 204 ~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~i~i~~~~~~~~~~ 255 (289)
T cd00200 204 WDL-----------------STGKCLGTLRGHENGVNSVAFSPDGYLLASGSED-----------GTIRVWDLRTGECVQ 255 (289)
T ss_pred EEC-----------------CCCceecchhhcCCceEEEEEcCCCcEEEEEcCC-----------CcEEEEEcCCceeEE
Confidence 887 33333 3333455567889999997765543312 458889887644321
Q ss_pred cccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 419 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
.... ....+..+.|+++++.|+ +...++...+|
T Consensus 256 ~~~~-------------------~~~~i~~~~~~~~~~~l~-~~~~d~~i~iw 288 (289)
T cd00200 256 TLSG-------------------HTNSVTSLAWSPDGKRLA-SGSADGTIRIW 288 (289)
T ss_pred Eccc-------------------cCCcEEEEEECCCCCEEE-EecCCCeEEec
Confidence 1110 011344678999988654 44444544444
No 166
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.01 E-value=1.3e-08 Score=115.69 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=73.6
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCC-----
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE----- 175 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~----- 175 (826)
.+..||||++++|.....+ ..+.++..||+.+. ++..++++... ....|+|||||+.|+|+++..
T Consensus 354 spaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~---gg~~~~lt~g~------~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL---GGVAVQVLEGH------SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cceECCCCCEEEEEEeecC-CCCCcceEEEEEeC---CCcceeeecCC------CCCCceECCCCCceEEEecCcceEEE
Confidence 5567999999999987666 33346789999874 33446666543 378899999999999987541
Q ss_pred ---CCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEe
Q 003363 176 ---NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (826)
Q Consensus 176 ---~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~ 226 (826)
++..+++.++ +.+..++ .+...+ ..++|||||++|||+.
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~I----------ssl~wSpDG~RiA~i~ 466 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPI----------SELQLSRDGVRAAMII 466 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCc----------CeEEECCCCCEEEEEE
Confidence 2344666666 4444433 323333 8999999999999986
No 167
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.00 E-value=3.2e-08 Score=110.98 Aligned_cols=203 Identities=18% Similarity=0.203 Sum_probs=134.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecC---CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ---SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
..+....|||||++++-.+.+. .+.+|+- +...+.+ .+....| ..+.|+|+|+.|+..+.+.+
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~-----tiriwd~~~~~~~~~~l---~gH~~~v------~~~~f~p~g~~i~Sgs~D~t 269 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDK-----TLRIWDLKDDGRNLKTL---KGHSTYV------TSVAFSPDGNLLVSGSDDGT 269 (456)
T ss_pred cceeeeEECCCCcEEEEecCCc-----eEEEeeccCCCeEEEEe---cCCCCce------EEEEecCCCCEEEEecCCCc
Confidence 5699999999999887765543 4566633 2333333 2333333 79999999998988888887
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce---EeccCCCCCCccceEEEeeCCC
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~---~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
.+ .|+....+.......+...+....|.++.....+...+..|.+||+.++.. ..+.+......+..+.|+|+|+
T Consensus 270 vr--iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~ 347 (456)
T KOG0266|consen 270 VR--IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK 347 (456)
T ss_pred EE--EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc
Confidence 66 444434555566667777777778888876667777789999999999983 2332111111568899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCc---cccCceecCCCC
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS---SAFFPRFSPDGK 384 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~---~~~~p~~SpDG~ 384 (826)
. |+... .+..+-.+|+. ........+.+.. ....+..+++|+
T Consensus 348 ~----ll~~~---------------~d~~~~~w~l~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 348 Y----LLSAS---------------LDRTLKLWDLR----------------SGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred E----EEEec---------------CCCeEEEEEcc----------------CCcceeeecccCCcceeEecccccCCCC
Confidence 7 76655 22256666662 1222333333322 355677789999
Q ss_pred EEEEEeccCCCCCCCCcccceEEEEeCCCCCCCC
Q 003363 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (826)
Q Consensus 385 ~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 418 (826)
.|+-.+.+ ..|++||..++...+
T Consensus 393 ~i~sg~~d-----------~~v~~~~~~s~~~~~ 415 (456)
T KOG0266|consen 393 LIYSGSED-----------GSVYVWDSSSGGILQ 415 (456)
T ss_pred eEEEEeCC-----------ceEEEEeCCccchhh
Confidence 88755544 459999998866543
No 168
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.00 E-value=9.4e-09 Score=100.73 Aligned_cols=154 Identities=18% Similarity=0.314 Sum_probs=97.7
Q ss_pred ceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCC
Q 003363 212 GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI 291 (826)
Q Consensus 212 ~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~ 291 (826)
.+.|+|+|+.|+.......... ++.+. +...||.++..+..+..+. .
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~------------------------------~ks~~--~~~~l~~~~~~~~~~~~i~-l 56 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKS------------------------------GKSYY--GEFELFYLNEKNIPVESIE-L 56 (194)
T ss_pred EEEecccCCEEEEEEEEeeccC------------------------------cceEE--eeEEEEEEecCCCccceee-c
Confidence 6789999999999876321110 11111 3478999998877776663 3
Q ss_pred CCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCC
Q 003363 292 PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI 371 (826)
Q Consensus 292 ~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~ 371 (826)
.....+.+++|+|+|+. ++.... ..+..+..+|+ ....+..+. .
T Consensus 57 ~~~~~I~~~~WsP~g~~----favi~g-------------~~~~~v~lyd~-----------------~~~~i~~~~--~ 100 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNE----FAVIYG-------------SMPAKVTLYDV-----------------KGKKIFSFG--T 100 (194)
T ss_pred cCCCceEEEEECcCCCE----EEEEEc-------------cCCcccEEEcC-----------------cccEeEeec--C
Confidence 33445889999999998 876641 12235677776 433334443 2
Q ss_pred ccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcc
Q 003363 372 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (826)
Q Consensus 372 ~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~w 451 (826)
.......|||+|++|+...... ....|.+||....+........ ....+.|
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n--------~~G~l~~wd~~~~~~i~~~~~~---------------------~~t~~~W 151 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGN--------LNGDLEFWDVRKKKKISTFEHS---------------------DATDVEW 151 (194)
T ss_pred CCceEEEECCCCCEEEEEEccC--------CCcEEEEEECCCCEEeeccccC---------------------cEEEEEE
Confidence 3445689999999999877542 2356889998753332111100 1236789
Q ss_pred ccCCCEEEEEEE
Q 003363 452 LSDGCTMLLSSI 463 (826)
Q Consensus 452 s~Dg~~l~~~~~ 463 (826)
||||++++..+.
T Consensus 152 sPdGr~~~ta~t 163 (194)
T PF08662_consen 152 SPDGRYLATATT 163 (194)
T ss_pred cCCCCEEEEEEe
Confidence 999998876654
No 169
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.99 E-value=9.5e-09 Score=100.09 Aligned_cols=106 Identities=23% Similarity=0.313 Sum_probs=72.4
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHH-HCCcEEEEECCCCCCCCchhhhhcCCCCCCcchH
Q 003363 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~ 652 (826)
.++..++-.|. ....|+++++|||+.+ .-.|...++.+. ..-..|+++|.||+++.--+-...+ -.+...
T Consensus 60 ~t~n~Y~t~~~----~t~gpil~l~HG~G~S--~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~dl---S~eT~~ 130 (343)
T KOG2564|consen 60 LTFNVYLTLPS----ATEGPILLLLHGGGSS--ALSFAIFASELKSKIRCRCLALDLRGHGETKVENEDDL---SLETMS 130 (343)
T ss_pred ceEEEEEecCC----CCCccEEEEeecCccc--chhHHHHHHHHHhhcceeEEEeeccccCccccCChhhc---CHHHHH
Confidence 35766666664 5677999999998876 446766777664 3457889999999554322211111 112236
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHh
Q 003363 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691 (826)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~ 691 (826)
+|+.+.++++... .+.+|.|+||||||.++.+.+..
T Consensus 131 KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 131 KDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred HHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhh
Confidence 7888877777644 34679999999999999887764
No 170
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.94 E-value=1.7e-08 Score=99.75 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=78.9
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
.+.+..+||-+||.|++ ...|......|.+.|++++.+||+|.+ ..... +. ....-.+-...+..++++-.
T Consensus 31 ~gs~~gTVv~~hGsPGS--H~DFkYi~~~l~~~~iR~I~iN~PGf~---~t~~~--~~--~~~~n~er~~~~~~ll~~l~ 101 (297)
T PF06342_consen 31 SGSPLGTVVAFHGSPGS--HNDFKYIRPPLDEAGIRFIGINYPGFG---FTPGY--PD--QQYTNEERQNFVNALLDELG 101 (297)
T ss_pred CCCCceeEEEecCCCCC--ccchhhhhhHHHHcCeEEEEeCCCCCC---CCCCC--cc--cccChHHHHHHHHHHHHHcC
Confidence 34556799999999987 456777888999999999999999943 32110 11 11224556666777777655
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCc
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 705 (826)
++ +++.++|||.|+-.|+.++..+| ..++++++|+
T Consensus 102 i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 102 IK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred CC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 65 78999999999999999999885 5677877763
No 171
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=5.7e-07 Score=87.05 Aligned_cols=227 Identities=17% Similarity=0.262 Sum_probs=132.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+...+|||.|++||..+-.. ...|| .+++.+-+..+ .+..+-| .+++||++|..||.-+.+
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~-----t~~Iw~k~~~efecv~~l-EGHEnEV------K~Vaws~sG~~LATCSRD--- 126 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDA-----TVVIWKKEDGEFECVATL-EGHENEV------KCVAWSASGNYLATCSRD--- 126 (312)
T ss_pred heeeeeeecCCCcEEEEeeccc-----eEEEeecCCCceeEEeee-eccccce------eEEEEcCCCCEEEEeeCC---
Confidence 4589999999999999887654 56777 23444443332 3443333 799999999999987654
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eE---eccCCCCCCccceEEEeeCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQ---AVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~---~l~~~~~~~~~~~~~wSPDg~ 307 (826)
..+|+|.++.+. .. .| .+....+-.+.|.|.-.
T Consensus 127 -----------------------------------------KSVWiWe~deddEfec~aVL--~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 127 -----------------------------------------KSVWIWEIDEDDEFECIAVL--QEHTQDVKHVIWHPTED 163 (312)
T ss_pred -----------------------------------------CeEEEEEecCCCcEEEEeee--ccccccccEEEEcCCcc
Confidence 467888776443 22 23 34455678999999766
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC-CcceecCCCCccccCceecCCCCEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt~~~~~~~~p~~SpDG~~l 386 (826)
|+|.+. |+ +.|..++-..+ +. .-...|..+...+....|.|.|.+|
T Consensus 164 -----lL~S~S------------YD--nTIk~~~~~~d--------------ddW~c~~tl~g~~~TVW~~~F~~~G~rl 210 (312)
T KOG0645|consen 164 -----LLFSCS------------YD--NTIKVYRDEDD--------------DDWECVQTLDGHENTVWSLAFDNIGSRL 210 (312)
T ss_pred -----eeEEec------------cC--CeEEEEeecCC--------------CCeeEEEEecCccceEEEEEecCCCceE
Confidence 666551 22 24444443100 11 2245677777788899999999999
Q ss_pred EEEeccCCCC-----CC-CCcccceEEEEeCCCCCCCCcccceeeeeeeeeccC---CCCC------cccccCCCCCCcc
Q 003363 387 VFLSAKSSVD-----SG-AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE---GDCF------PGLYSSSILSNPW 451 (826)
Q Consensus 387 ~f~s~~~~~~-----~g-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~f------~g~~~~~~~~~~w 451 (826)
+-.+.+.++. .+ ++.....||.+.|.+ +.. -+.+.++.+.+..... +..+ .+.+...++.+.|
T Consensus 211 ~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~-~~I-aS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 211 VSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDN-GVI-ASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred EEecCCcceEeeeeccCcchhcccceEeeeecc-cce-EeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 8887765321 00 011112344444441 111 1122223333332221 1111 1134456778889
Q ss_pred ccCCCEEEEEEEeCCeEEEEEE
Q 003363 452 LSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~v 473 (826)
.|.++.++++...+|..++|.+
T Consensus 289 ~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred cCCCCCceeecCCCceEEEEEe
Confidence 9866666677666677777754
No 172
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.93 E-value=3.7e-08 Score=108.59 Aligned_cols=222 Identities=15% Similarity=0.173 Sum_probs=127.1
Q ss_pred CceeeeccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC---ccchHHHHHHHHCCcEEEEECCCCCCCCchhh
Q 003363 563 GVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 639 (826)
Q Consensus 563 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~---~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~ 639 (826)
+..+.+.++ .++.+.|.|... ...+.| ||+++..-...+. ..-...+++|.++||.|+++|.+.-+. .
T Consensus 191 Pg~VV~~n~---l~eLiqY~P~te-~v~~~P-LLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~---~- 261 (560)
T TIGR01839 191 EGAVVFRNE---VLELIQYKPITE-QQHARP-LLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDK---A- 261 (560)
T ss_pred CCceeEECC---ceEEEEeCCCCC-CcCCCc-EEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCCh---h-
Confidence 334455543 256677777521 123345 6666663322111 122457899999999999999987322 1
Q ss_pred hhcCCCCCCcch-HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHH----HHHhCCC-ceeEEEecCCccchhhhc-
Q 003363 640 LQSLPGKVGSQD-VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH----LIGQAPD-KFVAAAARNPLCNLALMV- 712 (826)
Q Consensus 640 ~~~~~~~~~~~~-~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~----~a~~~p~-~~~a~v~~~p~~~~~~~~- 712 (826)
...++-.+ ++.+.++++.+.+. ...++|.++|+|+||.+++. +++++++ +++.+++....+|+..-.
T Consensus 262 ----~r~~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~~g~ 335 (560)
T TIGR01839 262 ----HREWGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTMESP 335 (560)
T ss_pred ----hcCCCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCCCCc
Confidence 11222222 34667777777766 34678999999999999986 6777786 799998877766643100
Q ss_pred ------------------cCCCCCCc----------------hhh-hhc--cCcC----CccCC----CCC---ChhhHH
Q 003363 713 ------------------GTTDIPDW----------------CYV-ESY--GSKG----KDSFT----ESP---SVEDLT 744 (826)
Q Consensus 713 ------------------~~~~~~~~----------------~~~-~~~--~~~~----~~~~~----~~~---~~~~~~ 744 (826)
..-.++.+ .+. ..+ +... ...+. ..| ..+..+
T Consensus 336 l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~~fdll~Wn~D~t~lPg~~~~e~l~ 415 (560)
T TIGR01839 336 AALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPAFDILYWNNDTTRLPAAFHGDLLD 415 (560)
T ss_pred chhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcchhhHHHHhCcCccchHHHHHHHHH
Confidence 00000100 000 000 0000 00000 000 012222
Q ss_pred HHhhcCcc-----------cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 745 RFHSKSPI-----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 745 ~~~~~sp~-----------~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
.|..+... -.+.+|++|+|++.|+.|.++|+..+..+.+.+.. +++++..+ +||.
T Consensus 416 ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~gs---~~~fvl~~-gGHI 481 (560)
T TIGR01839 416 MFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALLLGG---KRRFVLSN-SGHI 481 (560)
T ss_pred HHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHHcCC---CeEEEecC-CCcc
Confidence 22222211 24678999999999999999999999988877643 58887775 4684
No 173
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.92 E-value=4.5e-08 Score=87.01 Aligned_cols=186 Identities=17% Similarity=0.214 Sum_probs=115.8
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCC--CCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS--LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~--~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
..-+||+.||.+....+..+...+..|+.+|+.|..+++.-. --.|+. -|..-...-....+.++..|.+. .
T Consensus 13 ~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~r----kPp~~~~t~~~~~~~~~aql~~~--l 86 (213)
T COG3571 13 APVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRR----KPPPGSGTLNPEYIVAIAQLRAG--L 86 (213)
T ss_pred CCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCC----CCcCccccCCHHHHHHHHHHHhc--c
Confidence 344688889987777777788888999999999999996421 111110 01111111123445555566555 5
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCceeEEEec-CCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHh
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 747 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (826)
+..++.+-|+||||-++.+++....-.+.+.++. .|+.. -+ .|. ..
T Consensus 87 ~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp------------------pG---------KPe-----~~- 133 (213)
T COG3571 87 AEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP------------------PG---------KPE-----QL- 133 (213)
T ss_pred cCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC------------------CC---------Ccc-----cc-
Confidence 5678999999999999998886533335555543 23211 01 111 11
Q ss_pred hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCC---------CCHHHHHHHHH
Q 003363 748 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP---------QSDFESFLNIG 818 (826)
Q Consensus 748 ~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~---------~~~~~~~~~i~ 818 (826)
-..++..+++|+||.||+.|++-..++...+ .| ..+++++++.++.|.+--. .......+.+.
T Consensus 134 ---Rt~HL~gl~tPtli~qGtrD~fGtr~~Va~y--~l---s~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va 205 (213)
T COG3571 134 ---RTEHLTGLKTPTLITQGTRDEFGTRDEVAGY--AL---SDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVA 205 (213)
T ss_pred ---hhhhccCCCCCeEEeecccccccCHHHHHhh--hc---CCceEEEEeccCccccccccccccccHHHHHHHHHHHHH
Confidence 1246778999999999999998766554211 22 2469999999999976421 12223345566
Q ss_pred HHHHH
Q 003363 819 LWFKK 823 (826)
Q Consensus 819 ~w~~~ 823 (826)
.|..+
T Consensus 206 ~~~~~ 210 (213)
T COG3571 206 GWARR 210 (213)
T ss_pred HHHhh
Confidence 67654
No 174
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=2.8e-06 Score=86.21 Aligned_cols=286 Identities=16% Similarity=0.129 Sum_probs=154.5
Q ss_pred eeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCC-CCCCeEEEEe-cCCceeEEEecCCCcccc
Q 003363 126 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGS 203 (826)
Q Consensus 126 ~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~-~~~~~~~~i~-~~~~~~~~~~~~~~~~g~ 203 (826)
.+.|+.+.+++..++...+. .-.+....+..+|+|+++.|+.+...+ .+.---|.++ ++|++..+-.....-+..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~---~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ---LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhh---hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 44667777765554432221 111225688899999999997776552 2444456666 457666554432211100
Q ss_pred ccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC-
Q 003363 204 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS- 282 (826)
Q Consensus 204 v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~- 282 (826)
-.++.++||+.|+.+.-.. ..|-|..+..
T Consensus 92 -------~yvsvd~~g~~vf~AnY~~-------------------------------------------g~v~v~p~~~d 121 (346)
T COG2706 92 -------CYVSVDEDGRFVFVANYHS-------------------------------------------GSVSVYPLQAD 121 (346)
T ss_pred -------eEEEECCCCCEEEEEEccC-------------------------------------------ceEEEEEcccC
Confidence 3678999998666542211 2233333311
Q ss_pred CceEec----c---CCCC----CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 283 GEVQAV----K---GIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 283 g~~~~l----~---~~~~----~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
|.+..+ . ..+. ...+-...++||++. |+... - ..-.|+.+++
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~----l~v~D-L-------------G~Dri~~y~~--------- 174 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY----LVVPD-L-------------GTDRIFLYDL--------- 174 (346)
T ss_pred CccccceeeeecCCCCCCccccCCccceeeeCCCCCE----EEEee-c-------------CCceEEEEEc---------
Confidence 322211 0 0000 112446789999995 54443 1 2226888888
Q ss_pred hhhhcCCCCCCcceecC----CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeee
Q 003363 352 LELKESSSEDLPVVNLT----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt----~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 427 (826)
+.|.....+ ......+...|.|+||. +|+-.+- +++-.+|.+|-..++. ..+.
T Consensus 175 --------~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~-aY~v~EL-------~stV~v~~y~~~~g~~-------~~lQ 231 (346)
T COG2706 175 --------DDGKLTPADPAEVKPGAGPRHIVFHPNGKY-AYLVNEL-------NSTVDVLEYNPAVGKF-------EELQ 231 (346)
T ss_pred --------ccCccccccccccCCCCCcceEEEcCCCcE-EEEEecc-------CCEEEEEEEcCCCceE-------EEee
Confidence 333322221 23344678899999995 4555443 2334455555333222 2222
Q ss_pred eeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC--CCC-eeeEEEeecCCEEEE
Q 003363 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ESN-FSWSLLTLDGDNIIA 504 (826)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~--~~~-~~~~~~s~dg~~l~~ 504 (826)
.+-..|. +|.|-. +...+..++||+.||.+........+|.||.++|++.-+... .+. ...-.++++|+.|++
T Consensus 232 ~i~tlP~--dF~g~~--~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 232 TIDTLPE--DFTGTN--WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred eeccCcc--ccCCCC--ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 3323333 354411 234567899999887665445666889999999987755332 221 222357778887777
Q ss_pred EEeCCCCCCeEEEEe
Q 003363 505 VSSSPVDVPQVKYGY 519 (826)
Q Consensus 505 ~~s~~~~p~~l~~~~ 519 (826)
.....+. -.+|.++
T Consensus 308 a~q~sd~-i~vf~~d 321 (346)
T COG2706 308 ANQKSDN-ITVFERD 321 (346)
T ss_pred EccCCCc-EEEEEEc
Confidence 7766666 3344444
No 175
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.90 E-value=3.9e-07 Score=87.68 Aligned_cols=268 Identities=13% Similarity=0.172 Sum_probs=145.9
Q ss_pred EEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCC
Q 003363 111 AMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQS 188 (826)
Q Consensus 111 v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~ 188 (826)
|++..+...+++++..+...++.+... .....+...+. ...+-...|+|-..-++++...+ . .+.+| ..+
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh---~~svdql~w~~~~~d~~atas~d-k---~ir~wd~r~~ 97 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGH---TDSVDQLCWDPKHPDLFATASGD-K---TIRIWDIRSG 97 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecch-hhhhhhcccCC---CcchhhheeCCCCCcceEEecCC-c---eEEEEEeccC
Confidence 344444444455555555556555433 11112211211 12456678877776665554433 1 35556 345
Q ss_pred ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCC
Q 003363 189 QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYA 268 (826)
Q Consensus 189 ~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~ 268 (826)
+....+....+- -.+.|||||+++++...+
T Consensus 98 k~~~~i~~~~en----------i~i~wsp~g~~~~~~~kd---------------------------------------- 127 (313)
T KOG1407|consen 98 KCTARIETKGEN----------INITWSPDGEYIAVGNKD---------------------------------------- 127 (313)
T ss_pred cEEEEeeccCcc----------eEEEEcCCCCEEEEecCc----------------------------------------
Confidence 555555443333 478999999999996432
Q ss_pred CccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 269 GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 269 ~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
..|-.+|..+-++..- ..-...+...+|.-++. +.|..+ ..+.+-++..+
T Consensus 128 ----D~it~id~r~~~~~~~--~~~~~e~ne~~w~~~nd-----~Fflt~--------------GlG~v~ILsyp----- 177 (313)
T KOG1407|consen 128 ----DRITFIDARTYKIVNE--EQFKFEVNEISWNNSND-----LFFLTN--------------GLGCVEILSYP----- 177 (313)
T ss_pred ----ccEEEEEecccceeeh--hcccceeeeeeecCCCC-----EEEEec--------------CCceEEEEecc-----
Confidence 4566677666554433 23334556778985555 777663 22344445442
Q ss_pred hhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeee
Q 003363 349 ASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 428 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 428 (826)
.-..+..|..+...+....|+|||+++|..+.+. .+-+||++ +...+-
T Consensus 178 -----------sLkpv~si~AH~snCicI~f~p~GryfA~GsADA-----------lvSLWD~~--ELiC~R-------- 225 (313)
T KOG1407|consen 178 -----------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA-----------LVSLWDVD--ELICER-------- 225 (313)
T ss_pred -----------ccccccccccCCcceEEEEECCCCceEeeccccc-----------eeeccChh--Hhhhhe--------
Confidence 3344566777788889999999999999777653 23344432 221100
Q ss_pred eeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc-EEEecCCCCCeeeEEEeecCCEEEEEEe
Q 003363 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 429 ~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~-~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (826)
.|+- .+..+..++||.||++|. +++.+.-..|- ++.||. +..|...... ....|.|.-.-|+|.++
T Consensus 226 --------~isR-ldwpVRTlSFS~dg~~lA-SaSEDh~IDIA--~vetGd~~~eI~~~~~t-~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 226 --------CISR-LDWPVRTLSFSHDGRMLA-SASEDHFIDIA--EVETGDRVWEIPCEGPT-FTVAWHPKRPLLAYACD 292 (313)
T ss_pred --------eecc-ccCceEEEEeccCcceee-ccCccceEEeE--ecccCCeEEEeeccCCc-eeEEecCCCceeeEEec
Confidence 0000 111356788999999664 43333333333 445665 3344333332 33567777666666665
Q ss_pred CCCC
Q 003363 508 SPVD 511 (826)
Q Consensus 508 ~~~~ 511 (826)
+.+.
T Consensus 293 dk~~ 296 (313)
T KOG1407|consen 293 DKDG 296 (313)
T ss_pred CCCC
Confidence 5443
No 176
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.90 E-value=1.3e-07 Score=92.59 Aligned_cols=150 Identities=13% Similarity=0.122 Sum_probs=89.1
Q ss_pred cCCCCcceEEEEEeec-hhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 103 SGNGNGTQAMFSISQP-NLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~-~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
.|+++|..|++..... +-...++-...-++.++..+.....+.... .+.+...+|||+|+++|++...-.. .
T Consensus 12 ~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~----~~~I~~~~WsP~g~~favi~g~~~~---~ 84 (194)
T PF08662_consen 12 HWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK----EGPIHDVAWSPNGNEFAVIYGSMPA---K 84 (194)
T ss_pred EecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC----CCceEEEEECcCCCEEEEEEccCCc---c
Confidence 3789999999887732 312222222233333433333333332211 0238999999999999988642212 3
Q ss_pred EEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeec
Q 003363 182 FELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (826)
Q Consensus 182 ~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (826)
..+++.. ...+..+.... ...+.|||+|+.|+......
T Consensus 85 v~lyd~~-~~~i~~~~~~~---------~n~i~wsP~G~~l~~~g~~n-------------------------------- 122 (194)
T PF08662_consen 85 VTLYDVK-GKKIFSFGTQP---------RNTISWSPDGRFLVLAGFGN-------------------------------- 122 (194)
T ss_pred cEEEcCc-ccEeEeecCCC---------ceEEEECCCCCEEEEEEccC--------------------------------
Confidence 4445321 33333333222 15789999999999975432
Q ss_pred CCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003363 262 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
....|.+||....+.... ........+.|||||+. |+...
T Consensus 123 ---------~~G~l~~wd~~~~~~i~~---~~~~~~t~~~WsPdGr~----~~ta~ 162 (194)
T PF08662_consen 123 ---------LNGDLEFWDVRKKKKIST---FEHSDATDVEWSPDGRY----LATAT 162 (194)
T ss_pred ---------CCcEEEEEECCCCEEeec---cccCcEEEEEEcCCCCE----EEEEE
Confidence 236799999986554332 33345678999999998 87765
No 177
>PTZ00421 coronin; Provisional
Probab=98.90 E-value=6.6e-07 Score=100.24 Aligned_cols=211 Identities=14% Similarity=0.106 Sum_probs=121.2
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEec---CCce----eEEEecCCCccccccCCCcccceeecCCCC-eEEE
Q 003363 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS---QSQL----EKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAY 224 (826)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~---~~~~----~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~-~ia~ 224 (826)
+.+...+||| |++.||..+.++ .+.+|+ ++.. ..+..+ .+..+.| ..+.|+|++. .|+.
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~Dg-----tIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V------~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDG-----TIMGWGIPEEGLTQNISDPIVHL-QGHTKKV------GIVSFHPSAMNVLAS 143 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCC-----EEEEEecCCCccccccCcceEEe-cCCCCcE------EEEEeCcCCCCEEEE
Confidence 4588999999 888888765543 455662 2211 111111 1222333 7899999975 4544
Q ss_pred EeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEee
Q 003363 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 304 (826)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP 304 (826)
.+. +..|.+||+.+++..... ......+..++|+|
T Consensus 144 gs~--------------------------------------------DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~sp 178 (493)
T PTZ00421 144 AGA--------------------------------------------DMVVNVWDVERGKAVEVI-KCHSDQITSLEWNL 178 (493)
T ss_pred EeC--------------------------------------------CCEEEEEECCCCeEEEEE-cCCCCceEEEEEEC
Confidence 332 257999999988754431 22334578899999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCcc-ccCceecCC
Q 003363 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISS-AFFPRFSPD 382 (826)
Q Consensus 305 Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~-~~~p~~SpD 382 (826)
||+. |+..+ .+..|.++|+ .++. ...+..+.+. .....|+++
T Consensus 179 dG~l----Latgs---------------~Dg~IrIwD~-----------------rsg~~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 179 DGSL----LCTTS---------------KDKKLNIIDP-----------------RDGTIVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred CCCE----EEEec---------------CCCEEEEEEC-----------------CCCcEEEEEecCCCCcceEEEEcCC
Confidence 9997 66655 3347888897 3333 3444444332 345789999
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEE
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (826)
+..|+...... .....|.+||+........+...+ . ......+.|++|++.|+..+
T Consensus 223 ~~~ivt~G~s~-------s~Dr~VklWDlr~~~~p~~~~~~d---------~--------~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 223 KDLIITLGCSK-------SQQRQIMLWDTRKMASPYSTVDLD---------Q--------SSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred CCeEEEEecCC-------CCCCeEEEEeCCCCCCceeEeccC---------C--------CCceEEEEEcCCCCEEEEEE
Confidence 88876554321 123579999986533211000000 0 00122346889998776654
Q ss_pred EeCCeEEEEEEECCCCcEEEe
Q 003363 463 IWGSSQVIISVNVSSGELLRI 483 (826)
Q Consensus 463 ~~~~~~~l~~vdl~tg~~~~l 483 (826)
..++ .|..+|+.+++....
T Consensus 279 kgDg--~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 279 KGEG--NIRCFELMNERLTFC 297 (493)
T ss_pred eCCC--eEEEEEeeCCceEEE
Confidence 3334 455556666665443
No 178
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.8e-07 Score=88.63 Aligned_cols=252 Identities=12% Similarity=0.071 Sum_probs=136.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
..+....||+||..|+..++.+ .++++ ..+...+.+... -++ .-+.|-.....+.+.+....
T Consensus 15 ~~i~sl~fs~~G~~litss~dD-----sl~LYd~~~g~~~~ti~skkyG~----------~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDD-----SLRLYDSLSGKQVKTINSKKYGV----------DLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CceeEEEecCCCCEEEEecCCC-----eEEEEEcCCCceeeEeecccccc----------cEEEEecCCceEEEccCCCC
Confidence 3478899999999998865543 23344 344444444432 233 46667777777777766333
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
....+......+-.....+|..-+......|--..-+++..+..|.+||+...+.+-+. .. ....-.+|.|+|-.
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--~~-~~~pi~AfDp~GLi-- 154 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--NL-SGRPIAAFDPEGLI-- 154 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--ec-CCCcceeECCCCcE--
Confidence 22222222222223334444444444444554222334445678999999877665542 11 12234578887763
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcce--ecC-CCCccccCceecCCCCEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV--NLT-ESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~Lt-~~~~~~~~p~~SpDG~~l~ 387 (826)
++... ....|.++|+..- +.|.-+ .++ ..........||||||.|+
T Consensus 155 --fA~~~---------------~~~~IkLyD~Rs~--------------dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL 203 (311)
T KOG1446|consen 155 --FALAN---------------GSELIKLYDLRSF--------------DKGPFTTFSITDNDEAEWTDLEFSPDGKSIL 203 (311)
T ss_pred --EEEec---------------CCCeEEEEEeccc--------------CCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence 32222 1125667776321 223322 233 2233467789999999998
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCe
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (826)
...+. ..++++|.-+|..+.- +-..+....++ ...+|+|||+.| +....+++
T Consensus 204 lsT~~-----------s~~~~lDAf~G~~~~t---------fs~~~~~~~~~-------~~a~ftPds~Fv-l~gs~dg~ 255 (311)
T KOG1446|consen 204 LSTNA-----------SFIYLLDAFDGTVKST---------FSGYPNAGNLP-------LSATFTPDSKFV-LSGSDDGT 255 (311)
T ss_pred EEeCC-----------CcEEEEEccCCcEeee---------EeeccCCCCcc-------eeEEECCCCcEE-EEecCCCc
Confidence 66644 3588898777653210 00111112222 367899999855 55444454
Q ss_pred EEEEEEECCCCcEEEecCC
Q 003363 468 QVIISVNVSSGELLRITPA 486 (826)
Q Consensus 468 ~~l~~vdl~tg~~~~lt~~ 486 (826)
. ..+++++|+....+.+
T Consensus 256 i--~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 256 I--HVWNLETGKKVAVLRG 272 (311)
T ss_pred E--EEEEcCCCcEeeEecC
Confidence 4 4456677776554444
No 179
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.89 E-value=4.9e-08 Score=99.16 Aligned_cols=224 Identities=18% Similarity=0.184 Sum_probs=131.6
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHH-HCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 666 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 666 (826)
.-.+.|.++++||--++ ...|......|+ ..|-.|+.+|.|. +|.+..-.. .......+|+...++......
T Consensus 48 ~~~~~Pp~i~lHGl~GS--~~Nw~sv~k~Ls~~l~~~v~~vd~Rn---HG~Sp~~~~--h~~~~ma~dv~~Fi~~v~~~~ 120 (315)
T KOG2382|consen 48 NLERAPPAIILHGLLGS--KENWRSVAKNLSRKLGRDVYAVDVRN---HGSSPKITV--HNYEAMAEDVKLFIDGVGGST 120 (315)
T ss_pred ccCCCCceEEecccccC--CCCHHHHHHHhcccccCceEEEeccc---CCCCccccc--cCHHHHHHHHHHHHHHccccc
Confidence 34678999999995544 356777777775 4567899999998 444322111 113334566666666654332
Q ss_pred CCCCCcEEEEEecchH-HHHHHHHHhCCCceeEEEec--CCc-cch---------hhhccCC-C---CCCch-----hhh
Q 003363 667 LANPSKVTVVGGSHGG-FLTTHLIGQAPDKFVAAAAR--NPL-CNL---------ALMVGTT-D---IPDWC-----YVE 724 (826)
Q Consensus 667 ~~d~~rv~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~--~p~-~~~---------~~~~~~~-~---~~~~~-----~~~ 724 (826)
-..++.|+|||||| .+++..+...|+.+..+++. +|. +.. ..+.... . .+... +.+
T Consensus 121 --~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~ 198 (315)
T KOG2382|consen 121 --RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIE 198 (315)
T ss_pred --ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 23579999999999 66677777888877665543 331 110 0000000 0 00000 000
Q ss_pred -------------hcc-CcCCccCCCCCCh----hhHHHHhhcCccccc--CCCCCcEEEEEeCCCCCCCcHHHHHHHHH
Q 003363 725 -------------SYG-SKGKDSFTESPSV----EDLTRFHSKSPISHI--SKVKTPTIFLLGAQDLRVPVSNGLQYARA 784 (826)
Q Consensus 725 -------------~~~-~~~~~~~~~~~~~----~~~~~~~~~sp~~~~--~~i~~PvLii~G~~D~~vp~~~~~~~~~~ 784 (826)
.+. ......+.+.-.. +....+...+.-..+ .....|+|+++|.++..++.++-.++.+.
T Consensus 199 ~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~ 278 (315)
T KOG2382|consen 199 VGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKI 278 (315)
T ss_pred HhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHh
Confidence 000 0000001111111 111122122222223 44568999999999999999888777777
Q ss_pred HHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 785 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 785 l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
+.. ++++.++++||+...+... ++.+.|.+|+.++.
T Consensus 279 fp~----~e~~~ld~aGHwVh~E~P~-~~~~~i~~Fl~~~~ 314 (315)
T KOG2382|consen 279 FPN----VEVHELDEAGHWVHLEKPE-EFIESISEFLEEPE 314 (315)
T ss_pred ccc----hheeecccCCceeecCCHH-HHHHHHHHHhcccC
Confidence 765 8999999999998766554 88899999887754
No 180
>PTZ00421 coronin; Provisional
Probab=98.88 E-value=3.5e-07 Score=102.43 Aligned_cols=199 Identities=13% Similarity=0.090 Sum_probs=117.4
Q ss_pred cceeecC-CCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-----
Q 003363 211 EGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----- 284 (826)
Q Consensus 211 ~~~~wSP-Dg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~----- 284 (826)
..+.|+| |++.||..+.+ ..|.+||+.++.
T Consensus 79 ~~v~fsP~d~~~LaSgS~D--------------------------------------------gtIkIWdi~~~~~~~~~ 114 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASED--------------------------------------------GTIMGWGIPEEGLTQNI 114 (493)
T ss_pred EEEEEcCCCCCEEEEEeCC--------------------------------------------CEEEEEecCCCcccccc
Confidence 8999999 88888876554 467788876542
Q ss_pred ---eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC
Q 003363 285 ---VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (826)
Q Consensus 285 ---~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (826)
+..+ ......+..+.|+|++.. ++.++. .+..|.++|+ .+
T Consensus 115 ~~~l~~L--~gH~~~V~~l~f~P~~~~----iLaSgs--------------~DgtVrIWDl-----------------~t 157 (493)
T PTZ00421 115 SDPIVHL--QGHTKKVGIVSFHPSAMN----VLASAG--------------ADMVVNVWDV-----------------ER 157 (493)
T ss_pred CcceEEe--cCCCCcEEEEEeCcCCCC----EEEEEe--------------CCCEEEEEEC-----------------CC
Confidence 2233 223346778999999865 655541 2336888898 44
Q ss_pred Cc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcc
Q 003363 362 LP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 440 (826)
Q Consensus 362 ~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 440 (826)
++ ...+..+...+....|+|||+.|+..+.+ ..|.+||+.++.... .+ .... .
T Consensus 158 g~~~~~l~~h~~~V~sla~spdG~lLatgs~D-----------g~IrIwD~rsg~~v~---------tl-~~H~-~---- 211 (493)
T PTZ00421 158 GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD-----------KKLNIIDPRDGTIVS---------SV-EAHA-S---- 211 (493)
T ss_pred CeEEEEEcCCCCceEEEEEECCCCEEEEecCC-----------CEEEEEECCCCcEEE---------EE-ecCC-C----
Confidence 43 34555566678899999999988765543 458999987754311 00 0000 0
Q ss_pred cccCCCCCCccccCCCEEEEEEEe-CCeEEEEEEECCCCc-EEE-ecCCC-CCeeeEEEeecCCEEEEEEeCCCCCCeEE
Q 003363 441 LYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGE-LLR-ITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVK 516 (826)
Q Consensus 441 ~~~~~~~~~~ws~Dg~~l~~~~~~-~~~~~l~~vdl~tg~-~~~-lt~~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~ 516 (826)
.......|.+++..|+..... ..+..+..+|+.+.. ... +..+. .......++++++.++....+.. .|.
T Consensus 212 ---~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg---~Ir 285 (493)
T PTZ00421 212 ---AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG---NIR 285 (493)
T ss_pred ---CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC---eEE
Confidence 011245688888766543322 234566667776533 222 21111 12334567888886665543332 366
Q ss_pred EEeecc
Q 003363 517 YGYFVD 522 (826)
Q Consensus 517 ~~~~~~ 522 (826)
+.++..
T Consensus 286 iwdl~~ 291 (493)
T PTZ00421 286 CFELMN 291 (493)
T ss_pred EEEeeC
Confidence 666644
No 181
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.88 E-value=3e-08 Score=100.81 Aligned_cols=280 Identities=12% Similarity=0.024 Sum_probs=153.4
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCC
Q 003363 100 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 179 (826)
Q Consensus 100 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~ 179 (826)
-|-+.|++|+++|-.+.. ....+|...-+..-.-...|.... ..+....||||.++|+-....+
T Consensus 228 Wfl~FS~nGkyLAsaSkD-------~Taiiw~v~~d~~~kl~~tlvgh~-----~~V~yi~wSPDdryLlaCg~~e---- 291 (519)
T KOG0293|consen 228 WFLQFSHNGKYLASASKD-------STAIIWIVVYDVHFKLKKTLVGHS-----QPVSYIMWSPDDRYLLACGFDE---- 291 (519)
T ss_pred EEEEEcCCCeeEeeccCC-------ceEEEEEEecCcceeeeeeeeccc-----CceEEEEECCCCCeEEecCchH----
Confidence 355679999988765322 234556544222100012222222 4599999999999998875544
Q ss_pred eEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCC-CCCc
Q 003363 180 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS-WKGQ 256 (826)
Q Consensus 180 ~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 256 (826)
...+| ..|..+.... .+...++ .+..|-|||.+++..+.+..-- .|+.. +.....+.+... -...
T Consensus 292 -~~~lwDv~tgd~~~~y~--~~~~~S~------~sc~W~pDg~~~V~Gs~dr~i~--~wdlD-gn~~~~W~gvr~~~v~d 359 (519)
T KOG0293|consen 292 -VLSLWDVDTGDLRHLYP--SGLGFSV------SSCAWCPDGFRFVTGSPDRTII--MWDLD-GNILGNWEGVRDPKVHD 359 (519)
T ss_pred -heeeccCCcchhhhhcc--cCcCCCc------ceeEEccCCceeEecCCCCcEE--EecCC-cchhhcccccccceeEE
Confidence 45667 3444443332 2211122 6889999999988776554322 12211 111111211111 0112
Q ss_pred ceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCc
Q 003363 257 GDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (826)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~ 336 (826)
.+...|+...+.......|.+++.++..-+.+ +..+..+.+++.|-||+. +...- .+..
T Consensus 360 lait~Dgk~vl~v~~d~~i~l~~~e~~~dr~l--ise~~~its~~iS~d~k~----~LvnL---------------~~qe 418 (519)
T KOG0293|consen 360 LAITYDGKYVLLVTVDKKIRLYNREARVDRGL--ISEEQPITSFSISKDGKL----ALVNL---------------QDQE 418 (519)
T ss_pred EEEcCCCcEEEEEecccceeeechhhhhhhcc--ccccCceeEEEEcCCCcE----EEEEc---------------ccCe
Confidence 33444533333333556777788776655545 556667889999999995 33322 2237
Q ss_pred eEEEEcccccchhhhhhhhcCCCCCCcceecCCCCcc--ccCceec-CCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 337 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISS--AFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~--~~~p~~S-pDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
|..+|+. +...+++-.++... +-.-.|- .|.+.|+-.|. ..++|+|+..+
T Consensus 419 i~LWDl~----------------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE-----------D~kvyIWhr~s 471 (519)
T KOG0293|consen 419 IHLWDLE----------------ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE-----------DSKVYIWHRIS 471 (519)
T ss_pred eEEeecc----------------hhhHHHHhhcccccceEEEeccCCCCcceEEecCC-----------CceEEEEEccC
Confidence 8888882 22223333333211 1112222 23334433332 25799999888
Q ss_pred CCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
+.......+... .+.-++|.|-...++.++..+++.+||...
T Consensus 472 gkll~~LsGHs~-------------------~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 472 GKLLAVLSGHSK-------------------TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CceeEeecCCcc-------------------eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 776543333221 234568999888888888888888888754
No 182
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.87 E-value=5e-09 Score=111.50 Aligned_cols=128 Identities=23% Similarity=0.225 Sum_probs=90.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHHHHCC-cEEEEECCCCCCCCchhhhhcC---CCCCCcc
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYRGSLGFGEEALQSL---PGKVGSQ 650 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la~~G-~~Vl~~d~rG~~g~G~~~~~~~---~~~~~~~ 650 (826)
+...++.|. .+.++.|+|||||||.+..+.. .....-+.|+++| ++|+.+|||... +|--....+ .......
T Consensus 80 L~LNIwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~-lGfL~~~~~~~~~~~~~n~ 156 (491)
T COG2272 80 LYLNIWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGA-LGFLDLSSLDTEDAFASNL 156 (491)
T ss_pred eeEEeeccC--CCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCccccc-ceeeehhhccccccccccc
Confidence 555688887 3567789999999988765443 2223456888888 999999999532 221111111 1111123
Q ss_pred hHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccc
Q 003363 651 DVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCN 707 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~ 707 (826)
.+.|++.+++|+.++ ..-|++.|.|+|+|.||+.++.+++. |. +|+.+|+.+|.+.
T Consensus 157 Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 157 GLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 588999999999886 34799999999999999999888764 53 7888888887653
No 183
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.87 E-value=2.7e-08 Score=97.74 Aligned_cols=245 Identities=14% Similarity=0.165 Sum_probs=151.7
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
-+....|||||++|+..+-++ .+++| ..|+.++-..- +......+-|....++.||-|...||..+.
T Consensus 215 h~EcA~FSPDgqyLvsgSvDG-----FiEVWny~~GKlrKDLkY-QAqd~fMMmd~aVlci~FSRDsEMlAsGsq----- 283 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDG-----FIEVWNYTTGKLRKDLKY-QAQDNFMMMDDAVLCISFSRDSEMLASGSQ----- 283 (508)
T ss_pred chhheeeCCCCceEeeccccc-----eeeeehhccchhhhhhhh-hhhcceeecccceEEEeecccHHHhhccCc-----
Confidence 366789999999998765543 88999 46666553321 111122233444578999999998887543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
+..|.||.+.+|.. ++.. ....-++..+.||-|+..
T Consensus 284 ---------------------------------------DGkIKvWri~tG~ClRrFd-rAHtkGvt~l~FSrD~Sq--- 320 (508)
T KOG0275|consen 284 ---------------------------------------DGKIKVWRIETGQCLRRFD-RAHTKGVTCLSFSRDNSQ--- 320 (508)
T ss_pred ---------------------------------------CCcEEEEEEecchHHHHhh-hhhccCeeEEEEccCcch---
Confidence 35688999988874 3332 344557889999999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEe
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
|...+.+. .+.+--+ .+|+ .+....+...+....|++||.+|+-.+
T Consensus 321 -iLS~sfD~---------------tvRiHGl-----------------KSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 321 -ILSASFDQ---------------TVRIHGL-----------------KSGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred -hhcccccc---------------eEEEecc-----------------ccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 88776322 2323333 3443 455566677788999999999998777
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCc--ccceeeeeeeeeccCCCCCcccccCCCCCCcccc-CCCEEEEEEEeCCe
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSS--LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSIWGSS 467 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~-Dg~~l~~~~~~~~~ 467 (826)
.+ ..+.+|+..+++-... ..+.+- .+.++...| +-..+++. ...
T Consensus 368 sD-----------gtvkvW~~KtteC~~Tfk~~~~d~-------------------~vnsv~~~PKnpeh~iVC---Nrs 414 (508)
T KOG0275|consen 368 SD-----------GTVKVWHGKTTECLSTFKPLGTDY-------------------PVNSVILLPKNPEHFIVC---NRS 414 (508)
T ss_pred CC-----------ccEEEecCcchhhhhhccCCCCcc-------------------cceeEEEcCCCCceEEEE---cCC
Confidence 66 3477888776543211 111100 111222222 22234332 334
Q ss_pred EEEEEEECCCCcEEEecCCC---CCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 468 QVIISVNVSSGELLRITPAE---SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 468 ~~l~~vdl~tg~~~~lt~~~---~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
..+|.+++.+.-++..+.+. +++-...+||.|.++|++..+. .+|.....++
T Consensus 415 ntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~----vlYCF~~~sG 469 (508)
T KOG0275|consen 415 NTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG----VLYCFSVLSG 469 (508)
T ss_pred CeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc----EEEEEEeecC
Confidence 56888998655555555443 3555567899999999988763 3565554444
No 184
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.85 E-value=1.3e-07 Score=107.53 Aligned_cols=178 Identities=12% Similarity=0.086 Sum_probs=112.0
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
..++.||||++|||+....... .....+||+++. +++.+++
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~------------------------------------~d~~s~Lwv~~~-gg~~~~l-- 393 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGA------------------------------------PDPASSLWVGPL-GGVAVQV-- 393 (591)
T ss_pred ccceECCCCCEEEEEEeecCCC------------------------------------CCcceEEEEEeC-CCcceee--
Confidence 7899999999999997532100 013468999997 5555777
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
+.+. ....+.|||||+. |+|+.+... ............||.+++ ++++.++ ..
T Consensus 394 t~g~-~~t~PsWspDG~~----lw~v~dg~~---~~~v~~~~~~gql~~~~v-----------------d~ge~~~--~~ 446 (591)
T PRK13616 394 LEGH-SLTRPSWSLDADA----VWVVVDGNT---VVRVIRDPATGQLARTPV-----------------DASAVAS--RV 446 (591)
T ss_pred ecCC-CCCCceECCCCCc----eEEEecCcc---eEEEeccCCCceEEEEec-----------------cCchhhh--cc
Confidence 4444 3778999999999 999874321 111111223457888887 6666655 33
Q ss_pred CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEE---EeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCC
Q 003363 371 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR---IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 447 (826)
.+.+..++|||||++|+|+.. .+|++ ..-..| ...++.- ..+.. . ......
T Consensus 447 ~g~Issl~wSpDG~RiA~i~~------------g~v~Va~Vvr~~~G-~~~l~~~-~~l~~---~---------l~~~~~ 500 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMIIG------------GKVYLAVVEQTEDG-QYALTNP-REVGP---G---------LGDTAV 500 (591)
T ss_pred CCCcCeEEECCCCCEEEEEEC------------CEEEEEEEEeCCCC-ceeeccc-EEeec---c---------cCCccc
Confidence 456899999999999999882 24666 332333 3333211 11111 0 001234
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003363 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (826)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~ 482 (826)
.+.|..|++ |++.. ..+...+|.+++++...+.
T Consensus 501 ~l~W~~~~~-L~V~~-~~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 501 SLDWRTGDS-LVVGR-SDPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred cceEecCCE-EEEEe-cCCCCceEEEecCCccccc
Confidence 678999997 55443 3566778999998665544
No 185
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=1.2e-07 Score=97.93 Aligned_cols=246 Identities=14% Similarity=0.175 Sum_probs=146.2
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (826)
.|+|+.++|+.+ .+++++.|++.+. +..++. .+...+-........||||++||+....+ .|.++
T Consensus 266 ~p~G~~~i~~s~--------rrky~ysyDle~a--k~~k~~-~~~g~e~~~~e~FeVShd~~fia~~G~~G----~I~lL 330 (514)
T KOG2055|consen 266 APNGHSVIFTSG--------RRKYLYSYDLETA--KVTKLK-PPYGVEEKSMERFEVSHDSNFIAIAGNNG----HIHLL 330 (514)
T ss_pred cCCCceEEEecc--------cceEEEEeecccc--cccccc-CCCCcccchhheeEecCCCCeEEEcccCc----eEEee
Confidence 589997777643 4678999988443 222221 11111113466788899999999875443 45555
Q ss_pred e-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCC
Q 003363 185 W-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 263 (826)
Q Consensus 185 ~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 263 (826)
- ..++..-.+ ...|.| .++.||.||+.|+....
T Consensus 331 hakT~eli~s~----KieG~v------~~~~fsSdsk~l~~~~~------------------------------------ 364 (514)
T KOG2055|consen 331 HAKTKELITSF----KIEGVV------SDFTFSSDSKELLASGG------------------------------------ 364 (514)
T ss_pred hhhhhhhhhee----eeccEE------eeEEEecCCcEEEEEcC------------------------------------
Confidence 5 344433333 333444 89999999988876532
Q ss_pred CccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcc
Q 003363 264 GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 343 (826)
Q Consensus 264 g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 343 (826)
..++|+||+....+...---.+.++..+.+-|++|.+ ++..+.. |+. +||-.+-.
T Consensus 365 --------~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y----lA~GS~~------GiV-------NIYd~~s~ 419 (514)
T KOG2055|consen 365 --------TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY----LATGSDS------GIV-------NIYDGNSC 419 (514)
T ss_pred --------CceEEEEecCCcceEEEEeecCccceeeeeecCCCce----EEeccCc------ceE-------EEeccchh
Confidence 3589999998776544311344556778899999998 8776632 221 45544322
Q ss_pred cccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccce
Q 003363 344 LYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 423 (826)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 423 (826)
..+ .....+.++..-...+.+..|+||++.|+..|... .+.|.++.+++-..-
T Consensus 420 ~~s------------~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~---------knalrLVHvPS~TVF------ 472 (514)
T KOG2055|consen 420 FAS------------TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK---------KNALRLVHVPSCTVF------ 472 (514)
T ss_pred hcc------------CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc---------ccceEEEeccceeee------
Confidence 100 01122233333334578899999999998887653 356777777763221
Q ss_pred eeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 424 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 424 ~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
.=|.... . --..+..++|||.|.++.+. ...++..||.+.
T Consensus 473 ----sNfP~~n-~-----~vg~vtc~aFSP~sG~lAvG-Ne~grv~l~kL~ 512 (514)
T KOG2055|consen 473 ----SNFPTSN-T-----KVGHVTCMAFSPNSGYLAVG-NEAGRVHLFKLH 512 (514)
T ss_pred ----ccCCCCC-C-----cccceEEEEecCCCceEEee-cCCCceeeEeec
Confidence 0000000 0 00123467899999866554 556788888763
No 186
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.84 E-value=4.9e-08 Score=104.33 Aligned_cols=230 Identities=18% Similarity=0.256 Sum_probs=144.8
Q ss_pred CCCcEEEEEcCCCCCCCCc---cch-HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCC--------CCCcchHHHHHH
Q 003363 590 SCDPLIVVLHGGPHSVSLS---SYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--------KVGSQDVNDVLT 657 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~---~~~-~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~--------~~~~~~~~D~~~ 657 (826)
+++|+|++.||--.++... ... ..+-.|+++||.|..-|.|| ..|++.-..-.+. .+.+....|+-+
T Consensus 71 ~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA 149 (403)
T KOG2624|consen 71 KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPA 149 (403)
T ss_pred CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC-cccchhhcccCCcCCcceeecchhhhhhcCHHH
Confidence 8899999999954433221 111 23446799999999999999 4455543221111 122334679999
Q ss_pred HHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccchh---------------------hhcc
Q 003363 658 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLA---------------------LMVG 713 (826)
Q Consensus 658 ~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~---------------------~~~~ 713 (826)
.|+++++.. ..+++..+|||.|+...+.++...|+ +++.+++.+|+.-+. .+++
T Consensus 150 ~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg 227 (403)
T KOG2624|consen 150 MIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFG 227 (403)
T ss_pred HHHHHHHhc--cccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcC
Confidence 999999873 46899999999999999888887765 688899999976332 0000
Q ss_pred CCCC-CC-c---------hh-------------hhhccCc-----------------------------------CCccC
Q 003363 714 TTDI-PD-W---------CY-------------VESYGSK-----------------------------------GKDSF 734 (826)
Q Consensus 714 ~~~~-~~-~---------~~-------------~~~~~~~-----------------------------------~~~~~ 734 (826)
.... +. + |. ....|.+ ..+.|
T Consensus 228 ~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~y 307 (403)
T KOG2624|consen 228 RKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKY 307 (403)
T ss_pred CccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCcccc
Confidence 0000 00 0 00 0000000 00001
Q ss_pred CCCCChhhHHHHhh-cCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC--CCCCCCHH
Q 003363 735 TESPSVEDLTRFHS-KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERPQSDF 811 (826)
Q Consensus 735 ~~~~~~~~~~~~~~-~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~--~~~~~~~~ 811 (826)
..... .+...|.. ..|...+.++++|+.+..|..|..+.+++...+...+.+... ...+.+++-.|. +.......
T Consensus 308 D~G~~-~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~ 385 (403)
T KOG2624|consen 308 DYGSK-RNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKE 385 (403)
T ss_pred CCCcc-ccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHH
Confidence 11110 12222222 344566888999999999999999999999988888776544 333337888885 33455567
Q ss_pred HHHHHHHHHHHHH
Q 003363 812 ESFLNIGLWFKKY 824 (826)
Q Consensus 812 ~~~~~i~~w~~~~ 824 (826)
+++..|++.+++.
T Consensus 386 ~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 386 EVYDPVIERLRLF 398 (403)
T ss_pred HHHHHHHHHHHhh
Confidence 8899999888764
No 187
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.84 E-value=6.6e-08 Score=101.41 Aligned_cols=207 Identities=16% Similarity=0.232 Sum_probs=120.4
Q ss_pred EEEEe-cCCCCCCCCCcEEEEEcCCCCCCCCccch--HH--HHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchH
Q 003363 578 AIFVS-SSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KS--LAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 578 ~~~~~-P~~~~~~~~~P~vv~~HGg~~~~~~~~~~--~~--~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~ 652 (826)
.|++. |..++ .+..|+|||+|||++........ .. +..+.. ..++++.||.....- ..+...+..+
T Consensus 108 ~Wlvk~P~~~~-pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~-------~~~~~yPtQL 178 (374)
T PF10340_consen 108 YWLVKAPNRFK-PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSD-------EHGHKYPTQL 178 (374)
T ss_pred EEEEeCCcccC-CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccccc-------cCCCcCchHH
Confidence 47776 65432 33459999999998765332111 11 111222 569999999875400 0123344568
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC--C---CceeEEEecCCccchhhhccC----------CCC
Q 003363 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--P---DKFVAAAARNPLCNLALMVGT----------TDI 717 (826)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~--p---~~~~a~v~~~p~~~~~~~~~~----------~~~ 717 (826)
.++.+..++|.+.. ..+.|.|+|-|+||.+++.++... + ...+.+|+++|++++...... .|.
T Consensus 179 ~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~n~~~D~ 256 (374)
T PF10340_consen 179 RQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHDNEKRDM 256 (374)
T ss_pred HHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCccccccccccc
Confidence 99999999999542 247899999999999998876532 1 246899999999987521100 010
Q ss_pred CCchhhhhccC----c--CCccC-----CCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHH
Q 003363 718 PDWCYVESYGS----K--GKDSF-----TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 786 (826)
Q Consensus 718 ~~~~~~~~~~~----~--~~~~~-----~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~ 786 (826)
-.+.....++. . ..... ...+..-+.+.|... + -++-++++.|+++-+. .+.+++.+.+.
T Consensus 257 l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I-----~--~~~~vfVi~Ge~Evfr--ddI~~~~~~~~ 327 (374)
T PF10340_consen 257 LSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDI-----L--KKYSVFVIYGEDEVFR--DDILEWAKKLN 327 (374)
T ss_pred cchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHh-----c--cCCcEEEEECCccccH--HHHHHHHHHHh
Confidence 01000000110 0 00000 000000011122111 1 1357999999999766 88899999998
Q ss_pred hCCC-----CEEEEEeCCCCCCC
Q 003363 787 EKGV-----ETKVIVFPNDVHGI 804 (826)
Q Consensus 787 ~~g~-----~~~~~~~p~~~H~~ 804 (826)
..+. ..++.+-+++.|.-
T Consensus 328 ~~~~~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 328 DVKPNKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred hcCccccCCcceEEEecCCcccc
Confidence 6543 46778888888954
No 188
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.84 E-value=1.3e-07 Score=107.84 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=93.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc--eeE---------------EEecCCCccccccCCCcccceeec
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ--LEK---------------EFHVPQTVHGSVYADGWFEGISWN 216 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~--~~~---------------~~~~~~~~~g~v~~~~~~~~~~wS 216 (826)
+.+..+.|||||++||+.++. +++.+|.... ... ....-.+..+. +..+.||
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D------V~Dv~Ws 138 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDD-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSD------VLDVNWS 138 (942)
T ss_pred CceeEEEECCCCCeEeeccCc-----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCc------cceeccC
Confidence 458899999999999997654 4777782110 000 00011122222 3789999
Q ss_pred CCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCc
Q 003363 217 SDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS 296 (826)
Q Consensus 217 PDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~ 296 (826)
||+..+|..+-+ +.+.+||..+.+...+. ......
T Consensus 139 p~~~~lvS~s~D--------------------------------------------nsViiwn~~tF~~~~vl-~~H~s~ 173 (942)
T KOG0973|consen 139 PDDSLLVSVSLD--------------------------------------------NSVIIWNAKTFELLKVL-RGHQSL 173 (942)
T ss_pred CCccEEEEeccc--------------------------------------------ceEEEEccccceeeeee-eccccc
Confidence 999999887543 56888988776543331 334456
Q ss_pred cceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC------
Q 003363 297 VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES------ 370 (826)
Q Consensus 297 ~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~------ 370 (826)
+..++|-|-|++ ++..+.+ | .|-+++.. +-+-.+.++..
T Consensus 174 VKGvs~DP~Gky----~ASqsdD-------------r--tikvwrt~----------------dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 174 VKGVSWDPIGKY----FASQSDD-------------R--TLKVWRTS----------------DWGIEKSITKPFEESPL 218 (942)
T ss_pred ccceEECCccCe----eeeecCC-------------c--eEEEEEcc----------------cceeeEeeccchhhCCC
Confidence 788999999998 7766622 2 34444431 34444555543
Q ss_pred CccccCceecCCCCEEEEEecc
Q 003363 371 ISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
......+.|||||++|+-.-.-
T Consensus 219 ~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 219 TTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred cceeeecccCCCcCeecchhhc
Confidence 2236789999999999865443
No 189
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.83 E-value=1.7e-08 Score=104.18 Aligned_cols=120 Identities=22% Similarity=0.306 Sum_probs=86.4
Q ss_pred CeeEEEEEEecCCCCC---CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC-
Q 003363 573 QKPFEAIFVSSSHKKD---CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG- 648 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~---~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~- 648 (826)
+.++...++.|..... ..+.|+|++-||.+.. ...|...++.|++.||.|..++..|+..-+.......+..+.
T Consensus 49 ~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p 126 (365)
T COG4188 49 DRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAP 126 (365)
T ss_pred CCccccceeccCCCccccccCcCCeEEecCCCCCC--ccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccch
Confidence 4456667777775321 2478999999995443 668888999999999999999999965333222222211111
Q ss_pred ---cchHHHHHHHHHHHHHc---C----CCCCCcEEEEEecchHHHHHHHHHhCCC
Q 003363 649 ---SQDVNDVLTAIDHVIDM---G----LANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (826)
Q Consensus 649 ---~~~~~D~~~~i~~l~~~---~----~~d~~rv~l~G~S~GG~~a~~~a~~~p~ 694 (826)
.....|+...+++|.+. + .+|..+|+++|||+||+.++.++....+
T Consensus 127 ~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 127 AEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred hhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 12367888888888876 4 4889999999999999999998876543
No 190
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.83 E-value=1.4e-07 Score=97.27 Aligned_cols=235 Identities=14% Similarity=0.098 Sum_probs=132.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhh-hcCC---C------
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-QSLP---G------ 645 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~-~~~~---~------ 645 (826)
.+-.++.|+.. ..+.+|++|.+.|.+...........+..|.+.|++.+++..+- ||..-. +... .
T Consensus 77 a~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Py---yg~RkP~~Q~~s~l~~VsDl~ 152 (348)
T PF09752_consen 77 ARFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPY---YGQRKPKDQRRSSLRNVSDLF 152 (348)
T ss_pred eEEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEeccc---ccccChhHhhcccccchhHHH
Confidence 34456678753 34668999999995543333333334667778899999988554 332110 0000 0
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhcc--CCCCCCchhh
Q 003363 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG--TTDIPDWCYV 723 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~--~~~~~~~~~~ 723 (826)
..+...+.++...+.|+.++++ .+++|.|.||||++|..+++..|..+..+-+.++...-..+.. ......|...
T Consensus 153 ~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W~~L 229 (348)
T PF09752_consen 153 VMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINWDAL 229 (348)
T ss_pred HHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCHHHH
Confidence 1233457788889999999864 5899999999999999999999987665555544322111100 0112234322
Q ss_pred hhc-cCc--------------CCccCC---CCCChhhHHH-HhhcCcccccCCCCC-----cEEEEEeCCCCCCCcHHHH
Q 003363 724 ESY-GSK--------------GKDSFT---ESPSVEDLTR-FHSKSPISHISKVKT-----PTIFLLGAQDLRVPVSNGL 779 (826)
Q Consensus 724 ~~~-~~~--------------~~~~~~---~~~~~~~~~~-~~~~sp~~~~~~i~~-----PvLii~G~~D~~vp~~~~~ 779 (826)
+.- ... ...... .....+.... ...+.-..++.+..+ .+.++.+++|..||..+..
T Consensus 230 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~~v~ 309 (348)
T PF09752_consen 230 EKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRHGVL 309 (348)
T ss_pred HHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechhhcc
Confidence 211 000 000000 0000111111 112222334444433 3788899999999988877
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 780 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 780 ~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
.+.+.... .++.++++ ||.-..--....+-+.|.+=|+
T Consensus 310 ~Lq~~WPG----sEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 310 SLQEIWPG----SEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred hHHHhCCC----CeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 66666654 67778877 9964433334455566666554
No 191
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.82 E-value=3.1e-07 Score=104.83 Aligned_cols=120 Identities=16% Similarity=0.211 Sum_probs=73.6
Q ss_pred HHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEE------eecCCCC---------ccceeec
Q 003363 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTV------ISKENEN---------SVTFQWA 147 (826)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~------i~~~~~~---------~~~lt~~ 147 (826)
.+.+-...++........+ ||||+++|+-.+. +.-.+|-+. +-+.++. ...|..+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~---S~dG~~lAsGSDD-------~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H 128 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRF---SPDGSYLASGSDD-------RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH 128 (942)
T ss_pred chhheeeccccCceeEEEE---CCCCCeEeeccCc-------ceEEEeeecccCCcccccccccccccceeeEEEEEecC
Confidence 3444444455555555555 9999999875433 233444443 1111010 0122223
Q ss_pred CCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEee
Q 003363 148 PFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (826)
Q Consensus 148 ~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~ 227 (826)
+ +.+....||||+..||-++..+ .+.+|+...... +..-.++++.| .+++|-|=|+++|..+.
T Consensus 129 ~-----~DV~Dv~Wsp~~~~lvS~s~Dn-----sViiwn~~tF~~-~~vl~~H~s~V------KGvs~DP~Gky~ASqsd 191 (942)
T KOG0973|consen 129 D-----SDVLDVNWSPDDSLLVSVSLDN-----SVIIWNAKTFEL-LKVLRGHQSLV------KGVSWDPIGKYFASQSD 191 (942)
T ss_pred C-----CccceeccCCCccEEEEecccc-----eEEEEcccccee-eeeeecccccc------cceEECCccCeeeeecC
Confidence 3 5689999999999999987654 577886555533 33334556666 89999999999998765
Q ss_pred cC
Q 003363 228 EP 229 (826)
Q Consensus 228 ~~ 229 (826)
+.
T Consensus 192 Dr 193 (942)
T KOG0973|consen 192 DR 193 (942)
T ss_pred Cc
Confidence 53
No 192
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.81 E-value=1.4e-07 Score=104.05 Aligned_cols=197 Identities=14% Similarity=0.084 Sum_probs=136.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
+.+...+||||-++|+-.+++. ..++|. .....-+.. . +....| ..+.|+|-|-+.|..+.+.+.+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~-----svRLWsl~t~s~~V~y-~-GH~~PV------wdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDS-----SVRLWSLDTWSCLVIY-K-GHLAPV------WDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred CceeeeeecccccceeeccCCc-----ceeeeecccceeEEEe-c-CCCcce------eeEEecCCceEEEecCCCceee
Confidence 4488899999999998776643 456663 222222332 1 332223 6788999997777666666654
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
.|.....+....+.++..-.+-+.|.|+--...++..+..+-+||+.+|..+++. +.....+..++|||+|++
T Consensus 519 --LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~---- 591 (707)
T KOG0263|consen 519 --LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRY---- 591 (707)
T ss_pred --eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCce----
Confidence 4444444455555566666666677777555566777888999999999888774 334457889999999999
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC-CcceecCCCCccccCceecCCCCEEEEEec
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
|+..+ ....|.+||+ .+ ..+.++..+.+.+.+..||.||..||-.+.
T Consensus 592 LaSg~---------------ed~~I~iWDl-----------------~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 592 LASGD---------------EDGLIKIWDL-----------------ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred Eeecc---------------cCCcEEEEEc-----------------CCCcchhhhhcccCceeEEEEecCCCEEEecCC
Confidence 88766 2336889998 44 445677777888999999999998875553
Q ss_pred cCCCCCCCCcccceEEEEeCCC
Q 003363 392 KSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
+ ++|.+||+..
T Consensus 640 D-----------nsV~lWD~~~ 650 (707)
T KOG0263|consen 640 D-----------NSVRLWDLTK 650 (707)
T ss_pred C-----------CeEEEEEchh
Confidence 3 5688888754
No 193
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.81 E-value=7.6e-09 Score=119.92 Aligned_cols=129 Identities=22% Similarity=0.230 Sum_probs=86.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc--cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~ 653 (826)
|...++.|.......+.||+||||||.+..+.. ........++.++++||.+|||... +|--.........+...+.
T Consensus 109 L~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~-~Gfl~~~~~~~~~gN~Gl~ 187 (535)
T PF00135_consen 109 LYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGA-FGFLSLGDLDAPSGNYGLL 187 (535)
T ss_dssp -EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HH-HHH-BSSSTTSHBSTHHHH
T ss_pred HHHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccc-cccccccccccCchhhhhh
Confidence 566789998765555899999999998776554 2333445677899999999999521 2211110111002445689
Q ss_pred HHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCc
Q 003363 654 DVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPL 705 (826)
Q Consensus 654 D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~ 705 (826)
|+..|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|+++|+.+|.
T Consensus 188 Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 188 DQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp HHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 999999999986 34799999999999999999877764 23589999999984
No 194
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.81 E-value=7.9e-07 Score=99.24 Aligned_cols=221 Identities=14% Similarity=0.167 Sum_probs=130.9
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
...++||||++|||..... | .....|+++|+++|+...-.
T Consensus 127 ~~~~~Spdg~~la~~~s~~----------------------------------G-----~e~~~l~v~Dl~tg~~l~d~- 166 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDG----------------------------------G-----SEWYTLRVFDLETGKFLPDG- 166 (414)
T ss_dssp EEEEETTTSSEEEEEEEET----------------------------------T-----SSEEEEEEEETTTTEEEEEE-
T ss_pred eeeeECCCCCEEEEEecCC----------------------------------C-----CceEEEEEEECCCCcCcCCc-
Confidence 4688999999999986554 1 13478999999999654320
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc--eecC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLT 368 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt 368 (826)
+. ......+.|++||+. ++|+......+.. ..+.+..||++.+ .+... +.+.
T Consensus 167 i~-~~~~~~~~W~~d~~~----~~y~~~~~~~~~~----~~~~~~~v~~~~~-----------------gt~~~~d~lvf 220 (414)
T PF02897_consen 167 IE-NPKFSSVSWSDDGKG----FFYTRFDEDQRTS----DSGYPRQVYRHKL-----------------GTPQSEDELVF 220 (414)
T ss_dssp EE-EEESEEEEECTTSSE----EEEEECSTTTSS-----CCGCCEEEEEEET-----------------TS-GGG-EEEE
T ss_pred cc-ccccceEEEeCCCCE----EEEEEeCcccccc----cCCCCcEEEEEEC-----------------CCChHhCeeEE
Confidence 11 112224999999999 9998866543210 1223558999998 44333 2444
Q ss_pred CCCcc---ccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCC
Q 003363 369 ESISS---AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (826)
Q Consensus 369 ~~~~~---~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 445 (826)
..... ......|+||++|+..+.... ....+|++|+..+... . .....+... .++..
T Consensus 221 e~~~~~~~~~~~~~s~d~~~l~i~~~~~~-------~~s~v~~~d~~~~~~~--~---~~~~~l~~~-~~~~~------- 280 (414)
T PF02897_consen 221 EEPDEPFWFVSVSRSKDGRYLFISSSSGT-------SESEVYLLDLDDGGSP--D---AKPKLLSPR-EDGVE------- 280 (414)
T ss_dssp C-TTCTTSEEEEEE-TTSSEEEEEEESSS-------SEEEEEEEECCCTTTS--S----SEEEEEES-SSS-E-------
T ss_pred eecCCCcEEEEEEecCcccEEEEEEEccc-------cCCeEEEEeccccCCC--c---CCcEEEeCC-CCceE-------
Confidence 33222 346778999999877776641 1378999998875200 0 001111110 01100
Q ss_pred CCCCccccCCCEEEEEEEeC-CeEEEEEEECCCCc---EE-EecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 003363 446 ILSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGE---LL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~-~~~~l~~vdl~tg~---~~-~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 520 (826)
. .....|..+++.+..+ ....|+.++++... .. .+.+.........++..++.|++...... -++|.+.++
T Consensus 281 --~-~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~-~~~l~v~~~ 356 (414)
T PF02897_consen 281 --Y-YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG-SSRLRVYDL 356 (414)
T ss_dssp --E-EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT-EEEEEEEET
T ss_pred --E-EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC-ccEEEEEEC
Confidence 0 1112255677777654 56799999998776 34 45554444566678888888887766544 457888887
Q ss_pred c
Q 003363 521 V 521 (826)
Q Consensus 521 ~ 521 (826)
.
T Consensus 357 ~ 357 (414)
T PF02897_consen 357 D 357 (414)
T ss_dssp T
T ss_pred C
Confidence 6
No 195
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.80 E-value=2.1e-06 Score=94.08 Aligned_cols=231 Identities=17% Similarity=0.149 Sum_probs=151.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.+...+|+-.|.+|||-... -..+.+|. ..+.- +.. .++....+ ..+..||||+.||..+++
T Consensus 309 ~I~t~~~N~tGDWiA~g~~k----lgQLlVweWqsEsY-VlK-QQgH~~~i------~~l~YSpDgq~iaTG~eD----- 371 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSK----LGQLLVWEWQSESY-VLK-QQGHSDRI------TSLAYSPDGQLIATGAED----- 371 (893)
T ss_pred eeeEEEecccCCEEEEcCCc----cceEEEEEeeccce-eee-ccccccce------eeEEECCCCcEEEeccCC-----
Confidence 47889999999999995432 12455662 22211 111 12222222 689999999999997765
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
..+.|||..+|-...-. +.....+..+.|+.+|+. |
T Consensus 372 ---------------------------------------gKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~g~~----l 407 (893)
T KOG0291|consen 372 ---------------------------------------GKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTARGNV----L 407 (893)
T ss_pred ---------------------------------------CcEEEEeccCceEEEEe-ccCCCceEEEEEEecCCE----E
Confidence 35788998888654432 455667889999999996 6
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCc-cccCceecCCCCEEEEEecc
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-SAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~-~~~~p~~SpDG~~l~f~s~~ 392 (826)
+..+ -++.+..+|+. .....+.+|.... .....+.-|-|. |++....
T Consensus 408 lssS---------------LDGtVRAwDlk----------------RYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~ 455 (893)
T KOG0291|consen 408 LSSS---------------LDGTVRAWDLK----------------RYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQ 455 (893)
T ss_pred EEee---------------cCCeEEeeeec----------------ccceeeeecCCCceeeeEEEEcCCCC-EEEeecc
Confidence 5555 33356677762 2233455554422 233445556676 5555554
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
+ ...|++|+++||+...+..+... .+..++|+|+|. ++++.+|+.+.++|-
T Consensus 456 d---------~F~IfvWS~qTGqllDiLsGHEg-------------------PVs~l~f~~~~~-~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 456 D---------SFEIFVWSVQTGQLLDILSGHEG-------------------PVSGLSFSPDGS-LLASGSWDKTVRIWD 506 (893)
T ss_pred c---------eEEEEEEEeecCeeeehhcCCCC-------------------cceeeEEccccC-eEEeccccceEEEEE
Confidence 3 37899999999987655544432 345778999998 667888999999998
Q ss_pred EECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
+=-..++++.|.-... +-...|.|||+++....-+
T Consensus 507 if~s~~~vEtl~i~sd-vl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 507 IFSSSGTVETLEIRSD-VLAVSFRPDGKELAVATLD 541 (893)
T ss_pred eeccCceeeeEeeccc-eeEEEEcCCCCeEEEEEec
Confidence 7656677777654433 4456899999998766543
No 196
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.79 E-value=1.5e-07 Score=89.79 Aligned_cols=168 Identities=19% Similarity=0.240 Sum_probs=96.3
Q ss_pred EEEEcCCCCCCCCccchH-HHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcE
Q 003363 595 IVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 673 (826)
Q Consensus 595 vv~~HGg~~~~~~~~~~~-~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv 673 (826)
|+++||...+.. ..|.. ..+.|... +.|-.+|.-- .+.++-...++..+.. +| +.+
T Consensus 1 v~IvhG~~~s~~-~HW~~wl~~~l~~~-~~V~~~~~~~------------------P~~~~W~~~l~~~i~~--~~-~~~ 57 (171)
T PF06821_consen 1 VLIVHGYGGSPP-DHWQPWLERQLENS-VRVEQPDWDN------------------PDLDEWVQALDQAIDA--ID-EPT 57 (171)
T ss_dssp EEEE--TTSSTT-TSTHHHHHHHHTTS-EEEEEC--TS--------------------HHHHHHHHHHCCHC---T-TTE
T ss_pred CEEeCCCCCCCc-cHHHHHHHHhCCCC-eEEeccccCC------------------CCHHHHHHHHHHHHhh--cC-CCe
Confidence 678999665543 45554 44455555 6776665411 1233444433333332 33 469
Q ss_pred EEEEecchHHHHHHHH-HhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcc
Q 003363 674 TVVGGSHGGFLTTHLI-GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 752 (826)
Q Consensus 674 ~l~G~S~GG~~a~~~a-~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 752 (826)
.|+|||.|+.+++.++ .+...+++++++++|...-... .. .+ ....+. +.
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~-~~--~~-----------~~~~f~---------------~~ 108 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPE-PF--PP-----------ELDGFT---------------PL 108 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHH-CC--TC-----------GGCCCT---------------TS
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccccc-ch--hh-----------hccccc---------------cC
Confidence 9999999999999999 6777899999999997431000 00 00 000000 00
Q ss_pred cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 753 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 753 ~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
....+..|.+++.+++|+.||++.+.++++++. .+++.++++||.... ....-+..+++.|+
T Consensus 109 -p~~~l~~~~~viaS~nDp~vp~~~a~~~A~~l~-----a~~~~~~~~GHf~~~--~G~~~~p~~~~~l~ 170 (171)
T PF06821_consen 109 -PRDPLPFPSIVIASDNDPYVPFERAQRLAQRLG-----AELIILGGGGHFNAA--SGFGPWPEGLDLLQ 170 (171)
T ss_dssp -HCCHHHCCEEEEEETTBSSS-HHHHHHHHHHHT------EEEEETS-TTSSGG--GTHSS-HHHHHHHH
T ss_pred -cccccCCCeEEEEcCCCCccCHHHHHHHHHHcC-----CCeEECCCCCCcccc--cCCCchHHHHHHhc
Confidence 011233566999999999999999999999996 589999999996532 22233455555554
No 197
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=5.4e-07 Score=90.54 Aligned_cols=269 Identities=16% Similarity=0.221 Sum_probs=144.1
Q ss_pred HHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCC
Q 003363 84 KLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP 163 (826)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SP 163 (826)
+.+.+|++........+ +.++.......++....+-.+.+++ +....+..|+... ..++...+|-|
T Consensus 85 ~~Iaqf~~vt~ws~~dl--------r~~aWhqH~~~fava~nddvVriy~--ksst~pt~Lks~s----QrnvtclawRP 150 (445)
T KOG2139|consen 85 KQIAQFTDVTLWSEIDL--------RGVAWHQHIIAFAVATNDDVVRIYD--KSSTCPTKLKSVS----QRNVTCLAWRP 150 (445)
T ss_pred HHhhchhhhhhhhhcce--------eeEeechhhhhhhhhccCcEEEEec--cCCCCCceecchh----hcceeEEEecc
Confidence 34445555555555444 2333332222223233334455554 2223344444322 14688999999
Q ss_pred CCCeEEEEecCCCCCCeEEEEec---CCceeEEEecCCCccccccCC---CcccceeecCCCCeEEEEeecCCCCCCCcc
Q 003363 164 SGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYAD---GWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (826)
Q Consensus 164 dG~~la~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~g~v~~~---~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~ 237 (826)
-+..-+.+.-+. =+.+|. .....+........|+.|+.+ ..+....|.+||..++-.+-
T Consensus 151 lsaselavgCr~-----gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~---------- 215 (445)
T KOG2139|consen 151 LSASELAVGCRA-----GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF---------- 215 (445)
T ss_pred CCcceeeeeecc-----eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc----------
Confidence 887655553332 256672 233333322223334444332 24478999999998887643
Q ss_pred CCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCC-ccceEEEeeCCCCCccEEEEE
Q 003363 238 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFV 316 (826)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~~~lvf~ 316 (826)
+..+|.+||+++|...+| .+... +..-..|||||.. | |.
T Consensus 216 ---------------------------------gsssi~iWdpdtg~~~pL--~~~glgg~slLkwSPdgd~----l-fa 255 (445)
T KOG2139|consen 216 ---------------------------------GSSSIMIWDPDTGQKIPL--IPKGLGGFSLLKWSPDGDV----L-FA 255 (445)
T ss_pred ---------------------------------CcceEEEEcCCCCCcccc--cccCCCceeeEEEcCCCCE----E-EE
Confidence 237899999999998888 43333 4556789999996 5 44
Q ss_pred eecCcceeeeeeeeccCCCceEEEE-cccccchhhhhhhhcCCCCCC-cceecCCCCccccCceecCCCCEEEEEeccCC
Q 003363 317 GWSSETRKLGIKYCYNRPCALYAVR-VSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (826)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~l~~~d-~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~ 394 (826)
+.-+ .++++= .. ..- ..+... +.+.+....|||+|++|+|.....
T Consensus 256 At~d---------------avfrlw~e~----------------q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgs- 302 (445)
T KOG2139|consen 256 ATCD---------------AVFRLWQEN----------------QSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGS- 302 (445)
T ss_pred eccc---------------ceeeeehhc----------------ccceecceec-cCCceeeeeecCCCCEEEEEEcCC-
Confidence 4211 222221 10 111 122222 234788899999999999998664
Q ss_pred CCCCCCcccceEEEEeCCCCCCCCc-ccceeeeeeeeeccCCCCC--cccccCCCCCCccccCCCEEEEEEE
Q 003363 395 VDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPVVQCAEGDCF--PGLYSSSILSNPWLSDGCTMLLSSI 463 (826)
Q Consensus 395 ~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~f--~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (826)
..||....+....... ..+...+..+...+.-..- ..+-+.....++|.|.|.+|.+...
T Consensus 303 ---------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 303 ---------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred ---------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 4577766554332211 2222222222222111000 0122345567889999998876654
No 198
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.79 E-value=4.2e-08 Score=98.28 Aligned_cols=208 Identities=14% Similarity=0.045 Sum_probs=121.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCC----cEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G----~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
+....+|.|+++....++|++++.||--+.... ........|...| -+++.+|+--....... .+ ....
T Consensus 81 ~~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g-~i~~~~dsli~~g~i~pai~vgid~~d~~~R~~~----~~-~n~~- 153 (299)
T COG2382 81 ERRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSG-RIPRILDSLIAAGEIPPAILVGIDYIDVKKRREE----LH-CNEA- 153 (299)
T ss_pred ceeEEEEeCCCCCccccccEEEEeccHHHHhcC-ChHHHHHHHHHcCCCCCceEEecCCCCHHHHHHH----hc-ccHH-
Confidence 355678899999999999999999994332211 2223445555544 57788886432111111 11 1100
Q ss_pred hHHHHH-HHHHHHHHcCC--CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhcc
Q 003363 651 DVNDVL-TAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (826)
Q Consensus 651 ~~~D~~-~~i~~l~~~~~--~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 727 (826)
-...+. +.+-++.++.. -+.++-+|+|.|+||.++++++.++|++|..++..+|.+++......
T Consensus 154 ~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~~~------------- 220 (299)
T COG2382 154 YWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLDTQ------------- 220 (299)
T ss_pred HHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCccccc-------------
Confidence 122222 23334444321 35567789999999999999999999999999999997754321100
Q ss_pred CcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCC
Q 003363 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 807 (826)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~ 807 (826)
+..+. ....+-.........-++...++.+.+. ...+++++.|++.|.++.+..|+| ||...
T Consensus 221 ----------~~~~~---~~~l~~~~a~~~~~~~~l~~g~~~~~~~--~pNr~L~~~L~~~g~~~~yre~~G-gHdw~-- 282 (299)
T COG2382 221 ----------PQGEV---AESLKILHAIGTDERIVLTTGGEEGDFL--RPNRALAAQLEKKGIPYYYREYPG-GHDWA-- 282 (299)
T ss_pred ----------cccch---hhhhhhhhccCccceEEeecCCcccccc--chhHHHHHHHHhcCCcceeeecCC-CCchh--
Confidence 00011 1101111111222232333334444444 556789999999999999999999 89764
Q ss_pred CCHHHHHHHHHHHHHHH
Q 003363 808 QSDFESFLNIGLWFKKY 824 (826)
Q Consensus 808 ~~~~~~~~~i~~w~~~~ 824 (826)
.+...+.++|...
T Consensus 283 ----~Wr~~l~~~L~~l 295 (299)
T COG2382 283 ----WWRPALAEGLQLL 295 (299)
T ss_pred ----HhHHHHHHHHHHh
Confidence 3334555555543
No 199
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.79 E-value=3.4e-08 Score=95.72 Aligned_cols=117 Identities=26% Similarity=0.321 Sum_probs=89.4
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHH
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D 654 (826)
+....++.|. ..+.+|+|+|+||..- ....|...++.++++||+|++++.-.... .-+..++++
T Consensus 32 PkpLlI~tP~---~~G~yPVilF~HG~~l--~ns~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~~~Ei~~ 95 (307)
T PF07224_consen 32 PKPLLIVTPS---EAGTYPVILFLHGFNL--YNSFYSQLLAHIASHGFIVVAPQLYTLFP-----------PDGQDEIKS 95 (307)
T ss_pred CCCeEEecCC---cCCCccEEEEeechhh--hhHHHHHHHHHHhhcCeEEEechhhcccC-----------CCchHHHHH
Confidence 4556788887 6889999999999442 24567788899999999999999754211 233446888
Q ss_pred HHHHHHHHHHc--------CCCCCCcEEEEEecchHHHHHHHHHhCC-C-ceeEEEecCCccc
Q 003363 655 VLTAIDHVIDM--------GLANPSKVTVVGGSHGGFLTTHLIGQAP-D-KFVAAAARNPLCN 707 (826)
Q Consensus 655 ~~~~i~~l~~~--------~~~d~~rv~l~G~S~GG~~a~~~a~~~p-~-~~~a~v~~~p~~~ 707 (826)
..+.++|+.+. -..+.++++++|||.||-.|..+|..+. + .|.+.|-+.|+..
T Consensus 96 aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G 158 (307)
T PF07224_consen 96 AASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAG 158 (307)
T ss_pred HHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCC
Confidence 88999998764 1246789999999999999999988663 2 4788888888754
No 200
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.78 E-value=1.9e-07 Score=96.29 Aligned_cols=100 Identities=24% Similarity=0.357 Sum_probs=64.9
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHH---CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSS---VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~---~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
.|.|+++||.+... ..|......+.. . |.|+.+|.||.+. +. .. ..........+..+.+. .
T Consensus 21 ~~~i~~~hg~~~~~--~~~~~~~~~~~~~~~~-~~~~~~d~~g~g~---s~-~~------~~~~~~~~~~~~~~~~~--~ 85 (282)
T COG0596 21 GPPLVLLHGFPGSS--SVWRPVFKVLPALAAR-YRVIAPDLRGHGR---SD-PA------GYSLSAYADDLAALLDA--L 85 (282)
T ss_pred CCeEEEeCCCCCch--hhhHHHHHHhhccccc-eEEEEecccCCCC---CC-cc------cccHHHHHHHHHHHHHH--h
Confidence 45899999987653 233332222222 3 9999999998443 32 00 11122223334444443 2
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
...++.++|||+||.+++.++.++|+.++++++.++..
T Consensus 86 ~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 86 GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 23449999999999999999999999999999888653
No 201
>COG0627 Predicted esterase [General function prediction only]
Probab=98.78 E-value=3.5e-08 Score=102.67 Aligned_cols=227 Identities=17% Similarity=0.171 Sum_probs=131.4
Q ss_pred CCCCCcEEEEEcCCCCCC-CCccchHHHHHHHHCCcEEEEECCC--------------CC-CCCchhhhhcCCCCCCcch
Q 003363 588 DCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYR--------------GS-LGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~~G~~Vl~~d~r--------------G~-~g~G~~~~~~~~~~~~~~~ 651 (826)
.+.+.|+++++||-.... ........-......|++++.+|-. |. .++-.++.+... ..+...
T Consensus 50 m~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~-~~~~~q 128 (316)
T COG0627 50 MGRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPW-ASGPYQ 128 (316)
T ss_pred cCCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCcc-ccCccc
Confidence 457889999999944332 1112223444556788888887422 21 111111111110 011123
Q ss_pred HHHHH-HHHH-HHHHcCCCCC--CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhcc
Q 003363 652 VNDVL-TAID-HVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (826)
Q Consensus 652 ~~D~~-~~i~-~l~~~~~~d~--~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 727 (826)
.++++ .-+- .+.+....+. ++.+|+||||||+-|+.+|+++|++|+.+...+|+++........ . ......+
T Consensus 129 ~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~-~---~~~~~~g 204 (316)
T COG0627 129 WETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPT-L---AMGDPWG 204 (316)
T ss_pred hhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccccccccc-c---ccccccc
Confidence 33332 1222 3333444454 389999999999999999999999999999999998865332222 0 0000001
Q ss_pred CcCCccCCCCCChhhHHHHhhcCcccccCC--------------CCCcEEEEEeCCCCCCC--cHHHHHHHHHHHhCCCC
Q 003363 728 SKGKDSFTESPSVEDLTRFHSKSPISHISK--------------VKTPTIFLLGAQDLRVP--VSNGLQYARALREKGVE 791 (826)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--------------i~~PvLii~G~~D~~vp--~~~~~~~~~~l~~~g~~ 791 (826)
......+.+... ...+.+.+|...+++ ...++++-+|..|.+.. ....+.+.++++..|.+
T Consensus 205 ~~~~~~~~G~~~---~~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~ 281 (316)
T COG0627 205 GKAFNAMLGPDS---DPAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIP 281 (316)
T ss_pred CccHHHhcCCCc---cccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCC
Confidence 100111111110 112333444443332 44678888999998764 33477899999999999
Q ss_pred EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 003363 792 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 792 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~l 825 (826)
..+...++.+|.+... ...+..++.|+.+.|
T Consensus 282 ~~~~~~~~G~Hsw~~w---~~~l~~~~~~~a~~l 312 (316)
T COG0627 282 NGVRDQPGGDHSWYFW---ASQLADHLPWLAGAL 312 (316)
T ss_pred ceeeeCCCCCcCHHHH---HHHHHHHHHHHHHHh
Confidence 9999999999987532 245667788887765
No 202
>PTZ00420 coronin; Provisional
Probab=98.77 E-value=2.2e-06 Score=96.60 Aligned_cols=243 Identities=12% Similarity=0.032 Sum_probs=131.5
Q ss_pred eCCCCCeEEEEecCC-CCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCC-CCeEEEEeecCCCCCCCccC
Q 003363 161 PSPSGSKLLVVRNPE-NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSL 238 (826)
Q Consensus 161 ~SPdG~~la~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPD-g~~ia~~~~~~~~~~~~~~~ 238 (826)
.+.+++++|+.-... ++...++.+|..+....+..+ .+..+.| ..++|+|+ +..||..+.+
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L-~gH~~~V------~~lafsP~~~~lLASgS~D---------- 96 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKL-KGHTSSI------LDLQFNPCFSEILASGSED---------- 96 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEE-cCCCCCE------EEEEEcCCCCCEEEEEeCC----------
Confidence 445677777765432 344557778854443333333 2333444 89999997 6777766543
Q ss_pred CCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce---------EeccCCCCCCccceEEEeeCCCCC
Q 003363 239 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---------QAVKGIPKSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~---------~~l~~~~~~~~~~~~~wSPDg~~~ 309 (826)
..|.+||+.++.. ..+ ......+..++|+|++..
T Consensus 97 ----------------------------------gtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~~V~sVaf~P~g~~- 139 (568)
T PTZ00420 97 ----------------------------------LTIRVWEIPHNDESVKEIKDPQCIL--KGHKKKISIIDWNPMNYY- 139 (568)
T ss_pred ----------------------------------CeEEEEECCCCCccccccccceEEe--ecCCCcEEEEEECCCCCe-
Confidence 4677888765321 122 122346788999999987
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecCCCCccccCceecCCCCEEEE
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVF 388 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~l~f 388 (826)
++.++. .+..|.++|+ .+++. ..+. ....+.+..|+|||+.|+.
T Consensus 140 ---iLaSgS--------------~DgtIrIWDl-----------------~tg~~~~~i~-~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 140 ---IMCSSG--------------FDSFVNIWDI-----------------ENEKRAFQIN-MPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred ---EEEEEe--------------CCCeEEEEEC-----------------CCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence 765541 2236888888 44432 2333 3345788999999998875
Q ss_pred EeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC-Ce
Q 003363 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SS 467 (826)
Q Consensus 389 ~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-~~ 467 (826)
.+.+ ..|.+||+.++........... .. ....+....|++|++.|+.++... +.
T Consensus 185 ~s~D-----------~~IrIwD~Rsg~~i~tl~gH~g-----------~~---~s~~v~~~~fs~d~~~IlTtG~d~~~~ 239 (568)
T PTZ00420 185 TCVG-----------KHMHIIDPRKQEIASSFHIHDG-----------GK---NTKNIWIDGLGGDDNYILSTGFSKNNM 239 (568)
T ss_pred EecC-----------CEEEEEECCCCcEEEEEecccC-----------Cc---eeEEEEeeeEcCCCCEEEEEEcCCCCc
Confidence 5433 4589999887554211000000 00 000000113568888665544333 33
Q ss_pred EEEEEEECCC-CcEEEe-cCCCC-CeeeEEEeecCCEEEEEEeCCCCCCeEEEEee
Q 003363 468 QVIISVNVSS-GELLRI-TPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (826)
Q Consensus 468 ~~l~~vdl~t-g~~~~l-t~~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 520 (826)
..+..+|+.. ++.... ..+.. ..-.+.++++.+.+++++.+... +++.++
T Consensus 240 R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t---Ir~~e~ 292 (568)
T PTZ00420 240 REMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN---CRYYQH 292 (568)
T ss_pred cEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe---EEEEEc
Confidence 4677778763 333322 22211 11123455555555555544333 444444
No 203
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.77 E-value=1.8e-07 Score=88.54 Aligned_cols=115 Identities=23% Similarity=0.333 Sum_probs=88.4
Q ss_pred CCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHH
Q 003363 667 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRF 746 (826)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (826)
.++.+||.+-|.|+||.++++++..++....+.+..+++...... ..+.|. +.
T Consensus 89 Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~----~~~~~~----------------~~------- 141 (206)
T KOG2112|consen 89 GIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASI----GLPGWL----------------PG------- 141 (206)
T ss_pred CCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchh----hccCCc----------------cc-------
Confidence 388999999999999999999999887666666665554321100 000110 00
Q ss_pred hhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 747 HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 747 ~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
.. .+|++..||+.|+.||..-+.+..+.|+..+..+++..|+|.+|... .+.+..+..|+++
T Consensus 142 --------~~--~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~-----~~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 142 --------VN--YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTS-----PQELDDLKSWIKT 203 (206)
T ss_pred --------cC--cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccccc-----HHHHHHHHHHHHH
Confidence 00 68999999999999999999999999999999999999999999875 3556788888876
No 204
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.76 E-value=6.2e-07 Score=93.97 Aligned_cols=277 Identities=14% Similarity=0.104 Sum_probs=153.0
Q ss_pred hhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEE-ecC
Q 003363 119 NLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF-HVP 197 (826)
Q Consensus 119 ~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~-~~~ 197 (826)
.+.+++....+..|+..+-....+-+. .-.|+|...+...+|||.|.+|+.++.. .|..+++.+|-..-.+ ...
T Consensus 181 R~~sGs~Dy~v~~wDf~gMdas~~~fr-~l~P~E~h~i~sl~ys~Tg~~iLvvsg~----aqakl~DRdG~~~~e~~KGD 255 (641)
T KOG0772|consen 181 RFVSGSLDYTVKFWDFQGMDASMRSFR-QLQPCETHQINSLQYSVTGDQILVVSGS----AQAKLLDRDGFEIVEFSKGD 255 (641)
T ss_pred eeeeccccceEEEEecccccccchhhh-ccCcccccccceeeecCCCCeEEEEecC----cceeEEccCCceeeeeeccc
Confidence 345566778888888754433222111 1135566678999999999999998643 3566666444222221 111
Q ss_pred CC------ccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCcc
Q 003363 198 QT------VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR 271 (826)
Q Consensus 198 ~~------~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~ 271 (826)
+. ..|.+ ..+.+..|.|+.+..+..+...
T Consensus 256 QYI~Dm~nTKGHi---a~lt~g~whP~~k~~FlT~s~D------------------------------------------ 290 (641)
T KOG0772|consen 256 QYIRDMYNTKGHI---AELTCGCWHPDNKEEFLTCSYD------------------------------------------ 290 (641)
T ss_pred hhhhhhhccCCce---eeeeccccccCcccceEEecCC------------------------------------------
Confidence 11 11111 2335678999998777765432
Q ss_pred CceEEEEEccCCc--eEeccC---CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccccc
Q 003363 272 QPSLFVININSGE--VQAVKG---IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (826)
Q Consensus 272 ~~~l~v~d~~~g~--~~~l~~---~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (826)
..|.+||+..-+ .++++. -...+.+..-+|+|||+. |+-.. .+. .|-.++...
T Consensus 291 -gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~----iAagc-------------~DG--SIQ~W~~~~-- 348 (641)
T KOG0772|consen 291 -GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL----IAAGC-------------LDG--SIQIWDKGS-- 348 (641)
T ss_pred -CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch----hhhcc-------------cCC--ceeeeecCC--
Confidence 456666654322 223321 122346677899999998 76654 222 344444310
Q ss_pred chhhhhhhhcCCCCCCc----ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC-CCccc
Q 003363 347 SEASELELKESSSEDLP----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLE 421 (826)
Q Consensus 347 ~~~~~~~~~~~~~~~~~----~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~ 421 (826)
-+.. ++.-......+.+..||+||++|+-.+.+ ..|.+||+..-.. ...-.
T Consensus 349 -------------~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D-----------~tLKvWDLrq~kkpL~~~t 404 (641)
T KOG0772|consen 349 -------------RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD-----------DTLKVWDLRQFKKPLNVRT 404 (641)
T ss_pred -------------cccccceEeeeccCCCCceeEEEeccccchhhhccCC-----------Cceeeeeccccccchhhhc
Confidence 1111 11112223368899999999999755544 4588999865332 11110
Q ss_pred ceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEe---CCeEEEEEEECCCCc-EEEecCCCCCeeeEEEee
Q 003363 422 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW---GSSQVIISVNVSSGE-LLRITPAESNFSWSLLTL 497 (826)
Q Consensus 422 ~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~---~~~~~l~~vdl~tg~-~~~lt~~~~~~~~~~~s~ 497 (826)
+. ...|+ ....+||||.+.|+-.++. .....|+.+|..+-+ +.+|.-....+....|.|
T Consensus 405 gL-----------~t~~~------~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 405 GL-----------PTPFP------GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred CC-----------CccCC------CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc
Confidence 10 01122 2477899999855433332 123368888876643 334444444455567777
Q ss_pred cCCEEEEEEeC
Q 003363 498 DGDNIIAVSSS 508 (826)
Q Consensus 498 dg~~l~~~~s~ 508 (826)
.=++|++...+
T Consensus 468 kLNQi~~gsgd 478 (641)
T KOG0772|consen 468 KLNQIFAGSGD 478 (641)
T ss_pred hhhheeeecCC
Confidence 77777666555
No 205
>PTZ00420 coronin; Provisional
Probab=98.75 E-value=4e-06 Score=94.64 Aligned_cols=160 Identities=8% Similarity=0.091 Sum_probs=97.2
Q ss_pred cccEEEEeCCC-CCeEEEEecCCCCCCeEEEEec---CCce-eE----EEecCCCccccccCCCcccceeecCCCCeEEE
Q 003363 154 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWS---QSQL-EK----EFHVPQTVHGSVYADGWFEGISWNSDETLIAY 224 (826)
Q Consensus 154 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~i~~---~~~~-~~----~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~ 224 (826)
..+...+|+|+ ++.||..+..+ .+.+|+ ++.. .. +..+ .+..+.| ..++|+|++..|+.
T Consensus 75 ~~V~~lafsP~~~~lLASgS~Dg-----tIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V------~sVaf~P~g~~iLa 142 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDL-----TIRVWEIPHNDESVKEIKDPQCIL-KGHKKKI------SIIDWNPMNYYIMC 142 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCC-----eEEEEECCCCCccccccccceEEe-ecCCCcE------EEEEECCCCCeEEE
Confidence 46899999997 67777665432 455662 2211 11 1111 1222333 89999999987765
Q ss_pred EeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEee
Q 003363 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 304 (826)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP 304 (826)
++.. +..|.+||+.+++.... ......+..++|+|
T Consensus 143 SgS~-------------------------------------------DgtIrIWDl~tg~~~~~--i~~~~~V~Slswsp 177 (568)
T PTZ00420 143 SSGF-------------------------------------------DSFVNIWDIENEKRAFQ--INMPKKLSSLKWNI 177 (568)
T ss_pred EEeC-------------------------------------------CCeEEEEECCCCcEEEE--EecCCcEEEEEECC
Confidence 4321 25789999988875432 22334577899999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccc-----cCce
Q 003363 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA-----FFPR 378 (826)
Q Consensus 305 Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~-----~~p~ 378 (826)
||+. |+..+ .+..|.++|+ .+++ ...+..+.+.. ..-.
T Consensus 178 dG~l----Lat~s---------------~D~~IrIwD~-----------------Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 178 KGNL----LSGTC---------------VGKHMHIIDP-----------------RKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred CCCE----EEEEe---------------cCCEEEEEEC-----------------CCCcEEEEEecccCCceeEEEEeee
Confidence 9997 76554 2236888887 3443 33444443321 1124
Q ss_pred ecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 379 ~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
|++|+++|+-.+..+ ....+|.+||+..
T Consensus 222 fs~d~~~IlTtG~d~-------~~~R~VkLWDlr~ 249 (568)
T PTZ00420 222 LGGDDNYILSTGFSK-------NNMREMKLWDLKN 249 (568)
T ss_pred EcCCCCEEEEEEcCC-------CCccEEEEEECCC
Confidence 579999888766553 1234799999875
No 206
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.74 E-value=1.9e-07 Score=90.75 Aligned_cols=206 Identities=16% Similarity=0.140 Sum_probs=110.5
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC-
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL- 667 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~- 667 (826)
..+..++.+.|-|+.. ..|..+...|.. -+.++.+.|+|.+ ..+ +..-..|+.+.++.+.....
T Consensus 5 ~~~~~L~cfP~AGGsa---~~fr~W~~~lp~-~iel~avqlPGR~---~r~--------~ep~~~di~~Lad~la~el~~ 69 (244)
T COG3208 5 GARLRLFCFPHAGGSA---SLFRSWSRRLPA-DIELLAVQLPGRG---DRF--------GEPLLTDIESLADELANELLP 69 (244)
T ss_pred CCCceEEEecCCCCCH---HHHHHHHhhCCc-hhheeeecCCCcc---ccc--------CCcccccHHHHHHHHHHHhcc
Confidence 3444566666766543 345555555533 4889999999943 222 22234556666665555422
Q ss_pred -CCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEE---ecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCC-
Q 003363 668 -ANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAA---ARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS- 739 (826)
Q Consensus 668 -~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 739 (826)
.-..+++++||||||.+|..+|.+.-. ...+.. ..+|..+.. .......+-.+... ...+.+.+.
T Consensus 70 ~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~--~~i~~~~D~~~l~~-----l~~lgG~p~e 142 (244)
T COG3208 70 PLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRG--KQIHHLDDADFLAD-----LVDLGGTPPE 142 (244)
T ss_pred ccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCccc--CCccCCCHHHHHHH-----HHHhCCCChH
Confidence 223579999999999999998865311 122222 223311110 01111111111111 111222231
Q ss_pred -hhhHHHHh-----------hcCcccc--cCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCC
Q 003363 740 -VEDLTRFH-----------SKSPISH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 805 (826)
Q Consensus 740 -~~~~~~~~-----------~~sp~~~--~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 805 (826)
.++.+.+. ...-+.+ -..+.+|+.++.|++|..|..++...+.+..+. .+++.+|+| ||.+.
T Consensus 143 ~led~El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~---~f~l~~fdG-gHFfl 218 (244)
T COG3208 143 LLEDPELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTKG---DFTLRVFDG-GHFFL 218 (244)
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhcC---CceEEEecC-cceeh
Confidence 11222221 1111122 135789999999999999987777666666554 599999976 79876
Q ss_pred CCCCHHHHHHHHHHHH
Q 003363 806 RPQSDFESFLNIGLWF 821 (826)
Q Consensus 806 ~~~~~~~~~~~i~~w~ 821 (826)
.... .++...|.+.+
T Consensus 219 ~~~~-~~v~~~i~~~l 233 (244)
T COG3208 219 NQQR-EEVLARLEQHL 233 (244)
T ss_pred hhhH-HHHHHHHHHHh
Confidence 4433 24444444444
No 207
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=3.3e-07 Score=94.82 Aligned_cols=249 Identities=12% Similarity=0.069 Sum_probs=153.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
+++..+.|.|.-..|+.. .-+ +.-++|.++ ......+..++... .+....|+|+|+..+|.+.+
T Consensus 214 ~~I~sv~FHp~~plllva-G~d-~~lrifqvDGk~N~~lqS~~l~~f---------Pi~~a~f~p~G~~~i~~s~r---- 278 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVA-GLD-GTLRIFQVDGKVNPKLQSIHLEKF---------PIQKAEFAPNGHSVIFTSGR---- 278 (514)
T ss_pred CCceEEEecCCCceEEEe-cCC-CcEEEEEecCccChhheeeeeccC---------ccceeeecCCCceEEEeccc----
Confidence 568999999976655544 332 555677776 22333333333222 13678899999966665432
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC--CCccceEEEeeCCCCCc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK--SLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~--~~~~~~~~wSPDg~~~~ 310 (826)
+.-+|.||+.++++..+....+ .-....+..|||++.
T Consensus 279 ---------------------------------------rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~f-- 317 (514)
T KOG2055|consen 279 ---------------------------------------RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNF-- 317 (514)
T ss_pred ---------------------------------------ceEEEEeeccccccccccCCCCcccchhheeEecCCCCe--
Confidence 3579999999999988852111 225667889999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEe
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
|++.+ +.+.|+++.. .+++...-..-.+.+....||.||+.|+...
T Consensus 318 --ia~~G---------------~~G~I~lLha-----------------kT~eli~s~KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 318 --IAIAG---------------NNGHIHLLHA-----------------KTKELITSFKIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred --EEEcc---------------cCceEEeehh-----------------hhhhhhheeeeccEEeeEEEecCCcEEEEEc
Confidence 99988 4457888886 5555433333466788899999998775443
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEE
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (826)
++.++|+||+..... ...+.. ++.. .-.+++.|.+|+++ .+.+..|-..|
T Consensus 364 -----------~~GeV~v~nl~~~~~----------~~rf~D--~G~v------~gts~~~S~ng~yl-A~GS~~GiVNI 413 (514)
T KOG2055|consen 364 -----------GTGEVYVWNLRQNSC----------LHRFVD--DGSV------HGTSLCISLNGSYL-ATGSDSGIVNI 413 (514)
T ss_pred -----------CCceEEEEecCCcce----------EEEEee--cCcc------ceeeeeecCCCceE-EeccCcceEEE
Confidence 235799999877422 111111 1111 11366778999844 44455677788
Q ss_pred EEEE--CCCCcEEEecCCCC---CeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 471 ISVN--VSSGELLRITPAES---NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 471 ~~vd--l~tg~~~~lt~~~~---~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
|..+ ..++..+++..-+. .+....|++|+. |+++++.. .+..+.++.+.+.+
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~-~knalrLVHvPS~T 470 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRV-KKNALRLVHVPSCT 470 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhc-cccceEEEecccee
Confidence 8654 33455555543322 355567888776 44444432 33345566655443
No 208
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.73 E-value=2e-06 Score=82.24 Aligned_cols=259 Identities=14% Similarity=0.119 Sum_probs=151.4
Q ss_pred eEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCC--CCCccCCCCCC
Q 003363 180 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG--SSDKDCNSWKG 255 (826)
Q Consensus 180 ~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 255 (826)
..+++| ..|.-.+.++.+.+ ....+...||++.||-.+... ...++....... .....+..-+.
T Consensus 20 hTIRfWqa~tG~C~rTiqh~ds---------qVNrLeiTpdk~~LAaa~~qh---vRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDS---------QVNRLEITPDKKDLAAAGNQH---VRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceeeeeehhcCeEEEEEecCcc---------ceeeEEEcCCcchhhhccCCe---eEEEEccCCCCCceeEEeccCCceE
Confidence 567788 45655555554332 237899999999998765432 122332222211 11222222233
Q ss_pred cceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCC
Q 003363 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (826)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~ 335 (826)
.+.|..|..--|++..+..+.+||+..-...++ ......+..+...|+-.. |+... ...
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~--~~~~spVn~vvlhpnQte----Lis~d---------------qsg 146 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN--YQHNSPVNTVVLHPNQTE----LISGD---------------QSG 146 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchh--ccCCCCcceEEecCCcce----EEeec---------------CCC
Confidence 455666655567777889999999988666666 444567888999998776 65433 445
Q ss_pred ceEEEEcccccchhhhhhhhcCCCCCCcceecC-CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
+|+++|+. +..-...|. +....+.+....|||++|+-.-++ ...|+|++-++
T Consensus 147 ~irvWDl~----------------~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk-----------G~cyvW~l~~~ 199 (311)
T KOG0315|consen 147 NIRVWDLG----------------ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK-----------GNCYVWRLLNH 199 (311)
T ss_pred cEEEEEcc----------------CCccccccCCCCCcceeeEEEcCCCcEEEEecCC-----------ccEEEEEccCC
Confidence 89999983 222233444 445568889999999999865544 45899998773
Q ss_pred CCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCC-cEE-EecCCCCCeee
Q 003363 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG-ELL-RITPAESNFSW 492 (826)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg-~~~-~lt~~~~~~~~ 492 (826)
... ..++|+.+.+. +..-.....+|||+++|+ +.+.+....||..| +- +.+ .|+.+..-+-.
T Consensus 200 ~~~------s~l~P~~k~~a-------h~~~il~C~lSPd~k~la-t~ssdktv~iwn~~--~~~kle~~l~gh~rWvWd 263 (311)
T KOG0315|consen 200 QTA------SELEPVHKFQA-------HNGHILRCLLSPDVKYLA-TCSSDKTVKIWNTD--DFFKLELVLTGHQRWVWD 263 (311)
T ss_pred Ccc------ccceEhhheec-------ccceEEEEEECCCCcEEE-eecCCceEEEEecC--CceeeEEEeecCCceEEe
Confidence 331 12333333221 111234667899999775 33334445555544 43 333 33433332333
Q ss_pred EEEeecCCEEEEEEeCCCCCCeEE
Q 003363 493 SLLTLDGDNIIAVSSSPVDVPQVK 516 (826)
Q Consensus 493 ~~~s~dg~~l~~~~s~~~~p~~l~ 516 (826)
-.||.||.+|+...++ .-.++|
T Consensus 264 c~FS~dg~YlvTassd--~~~rlW 285 (311)
T KOG0315|consen 264 CAFSADGEYLVTASSD--HTARLW 285 (311)
T ss_pred eeeccCccEEEecCCC--Cceeec
Confidence 5789898866654443 434454
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.73 E-value=2.7e-06 Score=92.10 Aligned_cols=262 Identities=16% Similarity=0.144 Sum_probs=132.1
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 157 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
....+||||++++... ++ + .+-.++ ...+..+.+...... .++++||||++|+-....
T Consensus 40 ~~~~~s~Dgr~~yv~~-rd-g--~vsviD~~~~~~v~~i~~G~~~----------~~i~~s~DG~~~~v~n~~------- 98 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVAN-RD-G--TVSVIDLATGKVVATIKVGGNP----------RGIAVSPDGKYVYVANYE------- 98 (369)
T ss_dssp EEEE-TT-SSEEEEEE-TT-S--EEEEEETTSSSEEEEEE-SSEE----------EEEEE--TTTEEEEEEEE-------
T ss_pred eEEEecCCCCEEEEEc-CC-C--eEEEEECCcccEEEEEecCCCc----------ceEEEcCCCCEEEEEecC-------
Confidence 4467899999976654 33 2 466666 455666666655555 689999999988665433
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec-c--CCC---CCCccceEEEeeCCCCC
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-K--GIP---KSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~--~~~---~~~~~~~~~wSPDg~~~ 309 (826)
.+.+.++|.++.++... . +.+ ....+..+.-||+...
T Consensus 99 ------------------------------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~- 141 (369)
T PF02239_consen 99 ------------------------------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE- 141 (369)
T ss_dssp ------------------------------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-
T ss_pred ------------------------------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-
Confidence 26789999888775543 1 001 1123345666787775
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc--ceecCCCCccccCceecCCCCEEE
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
.++.-. ...+|+.+|.. +... .+.+. .........|+|||++++
T Consensus 142 ---fVv~lk--------------d~~~I~vVdy~----------------d~~~~~~~~i~-~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 142 ---FVVNLK--------------DTGEIWVVDYS----------------DPKNLKVTTIK-VGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp ---EEEEET--------------TTTEEEEEETT----------------TSSCEEEEEEE---TTEEEEEE-TTSSEEE
T ss_pred ---EEEEEc--------------cCCeEEEEEec----------------cccccceeeec-ccccccccccCcccceee
Confidence 555542 22379999972 1111 12221 222345578999999876
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCCCCcccc---ee--ee--------eeeeeccCCCCCc----c----------
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK---IV--DV--------IPVVQCAEGDCFP----G---------- 440 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~---~~--~~--------~~~~~~~~~~~f~----g---------- 440 (826)
-..... +.|-++|..+++...+... .. .. -++|.....+.+. |
T Consensus 188 va~~~s----------n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~ 257 (369)
T PF02239_consen 188 VAANGS----------NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY 257 (369)
T ss_dssp EEEGGG----------TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred eccccc----------ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhh
Confidence 544332 3566666555433211000 00 00 0111111111110 0
Q ss_pred -------cccC-CCCCCccccCCCEEEEEEE-eCCeEEEEEEECCCCcEE-EecCCCC-CeeeEEEeecCCEEEEEEeCC
Q 003363 441 -------LYSS-SILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELL-RITPAES-NFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 441 -------~~~~-~~~~~~ws~Dg~~l~~~~~-~~~~~~l~~vdl~tg~~~-~lt~~~~-~~~~~~~s~dg~~l~~~~s~~ 509 (826)
+-.. +...+.-+||++++++... ......|..+|..+.++. .+....+ ......|++||++++++.-+.
T Consensus 258 ~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 258 AWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp BTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred cCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence 0001 1123345899999988632 234568999999887653 4443332 255678999999999887665
Q ss_pred CCCCeEEEEeecc
Q 003363 510 VDVPQVKYGYFVD 522 (826)
Q Consensus 510 ~~p~~l~~~~~~~ 522 (826)
.. +|.++|..+
T Consensus 338 ~~--~i~v~D~~T 348 (369)
T PF02239_consen 338 NG--AIVVYDAKT 348 (369)
T ss_dssp TT--EEEEEETTT
T ss_pred CC--EEEEEECCC
Confidence 54 788888543
No 210
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.73 E-value=2.4e-07 Score=91.69 Aligned_cols=169 Identities=22% Similarity=0.261 Sum_probs=105.2
Q ss_pred CCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcC------CCCC--------------
Q 003363 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL------PGKV-------------- 647 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~------~~~~-------------- 647 (826)
.+.++|+|||-||-++. ..-|+.....||++||+|.++..|-....-.-..... ...|
T Consensus 114 k~~k~PvvvFSHGLggs--Rt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLGGS--RTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCCccEEEEecccccc--hhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 47899999999995544 5678888999999999999999987432111000000 0000
Q ss_pred -----CcchHHHHHHHHHHHHHc---------------------CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEe
Q 003363 648 -----GSQDVNDVLTAIDHVIDM---------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 701 (826)
Q Consensus 648 -----~~~~~~D~~~~i~~l~~~---------------------~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 701 (826)
-..-+.+|..|++-|.+. +.+|..+++++|||+||..++...+.+ ..|+++|+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~FrcaI~ 270 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRCAIA 270 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceeeeee
Confidence 011245677776655442 126778899999999999988777764 46888887
Q ss_pred cCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHH
Q 003363 702 RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 781 (826)
Q Consensus 702 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~ 781 (826)
..+ |++. ..+ ....+++.|+|+|.-+ | +--.+. ...
T Consensus 271 lD~---------------WM~P---------------l~~-----------~~~~~arqP~~finv~-~-fQ~~en-~~v 306 (399)
T KOG3847|consen 271 LDA---------------WMFP---------------LDQ-----------LQYSQARQPTLFINVE-D-FQWNEN-LLV 306 (399)
T ss_pred eee---------------eecc---------------cch-----------hhhhhccCCeEEEEcc-c-ccchhH-HHH
Confidence 654 3221 000 1234566899888732 2 222222 333
Q ss_pred HHHHHhCCCCEEEEEeCCCCCC
Q 003363 782 ARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 782 ~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
.+.....+..-.++.+.|+-|.
T Consensus 307 mKki~~~n~g~~~it~~GsVHq 328 (399)
T KOG3847|consen 307 MKKIESQNEGNHVITLDGSVHQ 328 (399)
T ss_pred HHhhhCCCccceEEEEccceec
Confidence 4444444555577788888884
No 211
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.72 E-value=1.2e-07 Score=96.65 Aligned_cols=238 Identities=14% Similarity=0.157 Sum_probs=147.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
.+..+.|.|+|++|+..+..+ -|.+|.+....-.+ +.+.. |..+....||++|.+++......-.+
T Consensus 98 ~V~~v~WtPeGRRLltgs~SG-----EFtLWNg~~fnFEt-ilQaH------Ds~Vr~m~ws~~g~wmiSgD~gG~iK-- 163 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSG-----EFTLWNGTSFNFET-ILQAH------DSPVRTMKWSHNGTWMISGDKGGMIK-- 163 (464)
T ss_pred ceeeEEEcCCCceeEeecccc-----cEEEecCceeeHHH-Hhhhh------cccceeEEEccCCCEEEEcCCCceEE--
Confidence 488899999999999876554 58999652211111 11122 12248999999999988765444332
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
+|............-+..-+...+|+++-..-.+-..++.|.+||..-.+. ++| ......+..+.|.|.-. |
T Consensus 164 yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL--~GHgwdVksvdWHP~kg-----L 236 (464)
T KOG0284|consen 164 YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL--RGHGWDVKSVDWHPTKG-----L 236 (464)
T ss_pred ecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee--ccCCCCcceeccCCccc-----e
Confidence 444222221111112223334455665544444455678899999876554 455 45567888999999644 6
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEecc
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
++++. +++-+-.+|. .+|. +-.|..+...+....|+|+|.+|+-.+.+
T Consensus 237 iasgs--------------kDnlVKlWDp-----------------rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD 285 (464)
T KOG0284|consen 237 IASGS--------------KDNLVKLWDP-----------------RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD 285 (464)
T ss_pred eEEcc--------------CCceeEeecC-----------------CCcchhhhhhhccceEEEEEEcCCCCeeEEccCC
Confidence 66652 2235667886 4444 45666777788999999999999877755
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
..+.++|..+-+......+. ...+....|+|=...|+.+...++....|.
T Consensus 286 -----------~~~kv~DiR~mkEl~~~r~H-------------------kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~ 335 (464)
T KOG0284|consen 286 -----------QSCKVFDIRTMKELFTYRGH-------------------KKDVTSLTWHPLNESLFTSGGSDGSVVHWV 335 (464)
T ss_pred -----------ceEEEEehhHhHHHHHhhcc-------------------hhhheeeccccccccceeeccCCCceEEEe
Confidence 34778887642221111111 112346789997777877776677777777
Q ss_pred EE
Q 003363 473 VN 474 (826)
Q Consensus 473 vd 474 (826)
++
T Consensus 336 v~ 337 (464)
T KOG0284|consen 336 VG 337 (464)
T ss_pred cc
Confidence 76
No 212
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.70 E-value=5.6e-08 Score=100.96 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=77.6
Q ss_pred CCCcEEEEEcCCCCCCCCccchH-HHH-HHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSK-SLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~-~~~-~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
...|++|++||..... ...|.. ... ++...+|.|+++|+++..... ..... .. .....+++...++++.+...
T Consensus 34 ~~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~--y~~a~-~~-~~~v~~~la~~l~~L~~~~g 108 (275)
T cd00707 34 PSRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANPN--YPQAV-NN-TRVVGAELAKFLDFLVDNTG 108 (275)
T ss_pred CCCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECccccccC--hHHHH-Hh-HHHHHHHHHHHHHHHHHhcC
Confidence 4468999999966543 134433 333 444568999999999842110 00000 00 01123567788888887755
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
++.++|.|+|||+||.++..++.++|++++.++...|..
T Consensus 109 ~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 109 LSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred CChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 677899999999999999999999999999999988764
No 213
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.69 E-value=3.7e-07 Score=87.61 Aligned_cols=222 Identities=13% Similarity=0.132 Sum_probs=113.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
-.+|..+..|--.|++. ...+.|.||+..|.... ...|...+.+|+..||.|+.+|.--+- |.+... ..++..
T Consensus 9 ~~~~~~I~vwet~P~~~-~~~~~~tiliA~Gf~rr--mdh~agLA~YL~~NGFhViRyDsl~Hv--GlSsG~--I~eftm 81 (294)
T PF02273_consen 9 LEDGRQIRVWETRPKNN-EPKRNNTILIAPGFARR--MDHFAGLAEYLSANGFHVIRYDSLNHV--GLSSGD--INEFTM 81 (294)
T ss_dssp ETTTEEEEEEEE---TT-S---S-EEEEE-TT-GG--GGGGHHHHHHHHTTT--EEEE---B-----------------H
T ss_pred cCCCCEEEEeccCCCCC-CcccCCeEEEecchhHH--HHHHHHHHHHHhhCCeEEEeccccccc--cCCCCC--hhhcch
Confidence 35678899999888853 45667889988885433 457888999999999999999965321 222111 111211
Q ss_pred -chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccC
Q 003363 650 -QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (826)
Q Consensus 650 -~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 728 (826)
...+++..+++|+.+.+ ..+++|+..|.-|-+|...+.+ ++ ...+|...+++++..-.......++.-...-+.
T Consensus 82 s~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVGVVnlr~TLe~al~~Dyl~~~i~~l 156 (294)
T PF02273_consen 82 SIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-IN-LSFLITAVGVVNLRDTLEKALGYDYLQLPIEQL 156 (294)
T ss_dssp HHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGGS-GGG-
T ss_pred HHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-cC-cceEEEEeeeeeHHHHHHHHhccchhhcchhhC
Confidence 23578999999999776 4679999999999999999885 43 667777779988753211100000000000000
Q ss_pred cCCccCCCCCC-hh-hHHHHh------hcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 003363 729 KGKDSFTESPS-VE-DLTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 800 (826)
Q Consensus 729 ~~~~~~~~~~~-~~-~~~~~~------~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~ 800 (826)
...-.+.+... .+ ...... ..+....++.+.+|++.+++++|..|...+..++...+.. ..++++.++|+
T Consensus 157 p~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s--~~~klysl~Gs 234 (294)
T PF02273_consen 157 PEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINS--NKCKLYSLPGS 234 (294)
T ss_dssp -SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT----EEEEEETT-
T ss_pred CCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCC--CceeEEEecCc
Confidence 00000111100 00 001111 1123456778899999999999999987777766665543 35889999999
Q ss_pred CCCCC
Q 003363 801 VHGIE 805 (826)
Q Consensus 801 ~H~~~ 805 (826)
.|.+.
T Consensus 235 ~HdL~ 239 (294)
T PF02273_consen 235 SHDLG 239 (294)
T ss_dssp SS-TT
T ss_pred cchhh
Confidence 99875
No 214
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.68 E-value=1.3e-06 Score=85.49 Aligned_cols=274 Identities=14% Similarity=0.127 Sum_probs=155.0
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
+++|.++++-. +....+.+|+.-+.. +..- -|+|+ ..+..-++||+|+.+|-..- +....+|.
T Consensus 63 ws~Dsr~ivSa---------SqDGklIvWDs~Ttn-K~ha---ipl~s--~WVMtCA~sPSg~~VAcGGL--dN~Csiy~ 125 (343)
T KOG0286|consen 63 WSTDSRRIVSA---------SQDGKLIVWDSFTTN-KVHA---IPLPS--SWVMTCAYSPSGNFVACGGL--DNKCSIYP 125 (343)
T ss_pred ecCCcCeEEee---------ccCCeEEEEEccccc-ceeE---EecCc--eeEEEEEECCCCCeEEecCc--CceeEEEe
Confidence 56666666432 344566666643322 1111 22332 56889999999999987432 24556776
Q ss_pred Ee-c--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 184 LW-S--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 184 i~-~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
+. . .+.....-.+ .+..|-+ +...|-+|+. |+..+.+.+-. .|+....+....+.+|..-+-.....
T Consensus 126 ls~~d~~g~~~v~r~l-~gHtgyl------ScC~f~dD~~-ilT~SGD~TCa--lWDie~g~~~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSREL-AGHTGYL------SCCRFLDDNH-ILTGSGDMTCA--LWDIETGQQTQVFHGHTGDVMSLSLS 195 (343)
T ss_pred cccccccccceeeeee-cCcccee------EEEEEcCCCc-eEecCCCceEE--EEEcccceEEEEecCCcccEEEEecC
Confidence 66 2 2222222122 2333333 7888988775 66665554322 34444444444455555544455556
Q ss_pred cCCCccC-CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 261 EDWGETY-AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 261 ~d~g~~~-~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
|.-+.++ ++.-+..-++||+..+..++-. ...+..+..+.|-|+|.. ++-.+. +..+++|-
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF-~ghesDINsv~ffP~G~a----fatGSD-------------D~tcRlyD 257 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTF-EGHESDINSVRFFPSGDA----FATGSD-------------DATCRLYD 257 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEee-cccccccceEEEccCCCe----eeecCC-------------CceeEEEe
Confidence 6223333 4445678899999888776652 233446789999999998 665552 22234444
Q ss_pred EEcccccchhhhhhhhcCCCCCCcceecCCC--CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 340 VRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
+. +..++...... ...+.+..||.-|+.| |....+ ....+||.-.++..
T Consensus 258 lR------------------aD~~~a~ys~~~~~~gitSv~FS~SGRlL-fagy~d----------~~c~vWDtlk~e~v 308 (343)
T KOG0286|consen 258 LR------------------ADQELAVYSHDSIICGITSVAFSKSGRLL-FAGYDD----------FTCNVWDTLKGERV 308 (343)
T ss_pred ec------------------CCcEEeeeccCcccCCceeEEEcccccEE-EeeecC----------CceeEeeccccceE
Confidence 43 22333332222 3457899999999855 554332 45778885554432
Q ss_pred CcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 418 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
-+..+. ...+.-+..+|||- .+.+.+|+...+||
T Consensus 309 g~L~GH-------------------eNRvScl~~s~DG~-av~TgSWDs~lriW 342 (343)
T KOG0286|consen 309 GVLAGH-------------------ENRVSCLGVSPDGM-AVATGSWDSTLRIW 342 (343)
T ss_pred EEeecc-------------------CCeeEEEEECCCCc-EEEecchhHheeec
Confidence 222222 12344566789996 55777787777776
No 215
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.66 E-value=8.4e-07 Score=91.54 Aligned_cols=227 Identities=17% Similarity=0.173 Sum_probs=126.7
Q ss_pred CCCcEEEEEcCCCCCCCCccc-----hHHHHHHH-------HCCcEEEEECCCCCC-CC-chhhhhcCC----CCCCcch
Q 003363 590 SCDPLIVVLHGGPHSVSLSSY-----SKSLAFLS-------SVGYSLLIVNYRGSL-GF-GEEALQSLP----GKVGSQD 651 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~-----~~~~~~la-------~~G~~Vl~~d~rG~~-g~-G~~~~~~~~----~~~~~~~ 651 (826)
.+..+||++|+-.+....... ..+.+.|. -.-|.||++|.-|+. |. |.......- .......
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 556789999984432211110 01333333 344999999988864 22 111111110 1223356
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEE-EEEecchHHHHHHHHHhCCCceeEEEecCCccchh---------hhccCCCCCCch
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWC 721 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~---------~~~~~~~~~~~~ 721 (826)
+.|...+-+.|+++-.| +++. ++|.||||+.++..+..+||++..++.++...... .......-|.|.
T Consensus 129 i~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~n 206 (368)
T COG2021 129 IRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPDWN 206 (368)
T ss_pred HHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCCcc
Confidence 88988888888887434 5665 99999999999999999999988877766532110 000000111220
Q ss_pred ------------------------------hhhhccCcCCcc-CCCCCChhhHHHH------------------------
Q 003363 722 ------------------------------YVESYGSKGKDS-FTESPSVEDLTRF------------------------ 746 (826)
Q Consensus 722 ------------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~------------------------ 746 (826)
+.+.++...... ..........+.|
T Consensus 207 ~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~al 286 (368)
T COG2021 207 GGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRAL 286 (368)
T ss_pred CCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 001111100000 0000000011111
Q ss_pred hhcCcccc-------cCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEe-CCCCCCCCCCCCHHHHHHHHH
Q 003363 747 HSKSPISH-------ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF-PNDVHGIERPQSDFESFLNIG 818 (826)
Q Consensus 747 ~~~sp~~~-------~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~-p~~~H~~~~~~~~~~~~~~i~ 818 (826)
...++... +.++++|+|++.-+.|...|+++.+++.+.|+..+. ++.+ ...||.-...+.. .+...|.
T Consensus 287 d~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~---~~~i~S~~GHDaFL~e~~-~~~~~i~ 362 (368)
T COG2021 287 DYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGA---LREIDSPYGHDAFLVESE-AVGPLIR 362 (368)
T ss_pred HhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCc---eEEecCCCCchhhhcchh-hhhHHHH
Confidence 12233222 778999999999999999999999999999998765 4333 3457853322222 3446666
Q ss_pred HHHH
Q 003363 819 LWFK 822 (826)
Q Consensus 819 ~w~~ 822 (826)
.||+
T Consensus 363 ~fL~ 366 (368)
T COG2021 363 KFLA 366 (368)
T ss_pred HHhh
Confidence 6765
No 216
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.66 E-value=1.7e-07 Score=101.67 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=76.2
Q ss_pred CCcEEEEEcCCCCCCCCccchH-HHHHHH-H-CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSK-SLAFLS-S-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~-~~~~la-~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
..|++|++||.........|.. ....|. . ..|.|+++|++|.+ ........ ..-....+++.+.+++|.+...
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g---~s~y~~a~-~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRA---QQHYPTSA-AYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcC---CCCCcccc-ccHHHHHHHHHHHHHHHHHhhC
Confidence 4588999999664322234544 344443 2 36999999999843 22110000 1111123567777888876544
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
++.+++.|+|||+||.++..++..+|+++.++++..|..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 678999999999999999999999999999999988853
No 217
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.66 E-value=5.9e-07 Score=96.44 Aligned_cols=202 Identities=9% Similarity=0.059 Sum_probs=119.8
Q ss_pred hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHH
Q 003363 611 SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 690 (826)
Q Consensus 611 ~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~ 690 (826)
....+.|.+ |+.|+++|..-... .+..-+...++|....+...++. +.++ +.++|+|+||.+++.+++
T Consensus 120 RS~V~~Ll~-g~dVYl~DW~~p~~--------vp~~~~~f~ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa~A 187 (406)
T TIGR01849 120 RSTVEALLP-DHDVYITDWVNARM--------VPLSAGKFDLEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAAVA 187 (406)
T ss_pred HHHHHHHhC-CCcEEEEeCCCCCC--------CchhcCCCCHHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHHHH
Confidence 446777888 99999999865221 11122344567766655555554 3344 999999999999776665
Q ss_pred hC-----CCceeEEEecCCccchhhhccC------------------------------CCCCCchhhhhccC-c-----
Q 003363 691 QA-----PDKFVAAAARNPLCNLALMVGT------------------------------TDIPDWCYVESYGS-K----- 729 (826)
Q Consensus 691 ~~-----p~~~~a~v~~~p~~~~~~~~~~------------------------------~~~~~~~~~~~~~~-~----- 729 (826)
.. |..++.+++..+.+|.....+. ...|.+.....+-. +
T Consensus 188 l~a~~~~p~~~~sltlm~~PID~~~~p~~v~~~a~~~~i~~~~~~~i~~vp~~~~g~gr~v~PG~~~~~~F~~mnp~r~~ 267 (406)
T TIGR01849 188 LMAENEPPAQPRSMTLMGGPIDARASPTVVNELAREKPIEWFQHNVIMRVPFPYPGAGRLVYPGFLQLAGFISMNLDRHT 267 (406)
T ss_pred HHHhcCCCCCcceEEEEecCccCCCCCchHHHHhhcccHHHHHHHhhhccCccccCCCCcccCHHHHHHHHHHcCcchHH
Confidence 44 5678999988877765321000 01111110000000 0
Q ss_pred -----CCccCC--CCCCh----------------------hhHHHHhhcCcc-----------cccCCCC-CcEEEEEeC
Q 003363 730 -----GKDSFT--ESPSV----------------------EDLTRFHSKSPI-----------SHISKVK-TPTIFLLGA 768 (826)
Q Consensus 730 -----~~~~~~--~~~~~----------------------~~~~~~~~~sp~-----------~~~~~i~-~PvLii~G~ 768 (826)
....+. ..+.. +..+.+...+.+ -.+++|+ +|+|.+.|+
T Consensus 268 ~~~~~~~~~l~~gd~~~~~~~~~f~~~y~d~~dlpge~y~~~v~~vf~~n~L~~G~l~v~G~~Vdl~~I~~~pll~V~ge 347 (406)
T TIGR01849 268 KAHSDFFLHLVKGDGQEADKHRIFYDEYLAVMDMTAEFYLQTIDVVFQQFLLPQGKFIVEGKRVDPGAITRVALLTVEGE 347 (406)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHhCCccCCcEEECCEEecHHHCcccceEEEecc
Confidence 000000 00000 001111111111 2356788 999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCC-CCEEEEEeCCCCCC--CCCCCCHHHHHHHHHHHHHHH
Q 003363 769 QDLRVPVSNGLQYARALREKG-VETKVIVFPNDVHG--IERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 769 ~D~~vp~~~~~~~~~~l~~~g-~~~~~~~~p~~~H~--~~~~~~~~~~~~~i~~w~~~~ 824 (826)
.|.++|+.++..+.+.....+ .+.+.+..+++||. +.......+.+..|.+|+.++
T Consensus 348 ~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 348 NDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred CCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 999999999998888753332 23556777889996 445666678899999999864
No 218
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.65 E-value=3.2e-06 Score=83.88 Aligned_cols=211 Identities=13% Similarity=0.152 Sum_probs=113.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcE-EEEECCCC---------CCCCchhh--
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS-LLIVNYRG---------SLGFGEEA-- 639 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~-Vl~~d~rG---------~~g~G~~~-- 639 (826)
.+...+.++..|+++.++.+||||.++-|.... ..........+++.-.. .+.+.|+. ...|-...
T Consensus 19 ~~~~yri~i~~P~~~~~~~~YpVlY~lDGn~vf--~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~~~~r~~DyTp~~~~ 96 (264)
T COG2819 19 TGRKYRIFIATPKNYPKPGGYPVLYMLDGNAVF--NALTEIMLRILADLPPPVIVGIGYETILVFDPNRRAYDYTPPSAN 96 (264)
T ss_pred CCcEEEEEecCCCCCCCCCCCcEEEEecchhhh--chHHHHhhhhhhcCCCceEEEeccccccccccccccccCCCCCCC
Confidence 467788899999998777779977666663211 11111112223332222 22233332 11111110
Q ss_pred --hhcC----CCCCCcch--HHHHHHHHHHHHH-cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh
Q 003363 640 --LQSL----PGKVGSQD--VNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (826)
Q Consensus 640 --~~~~----~~~~~~~~--~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 710 (826)
.... ...-|..+ .+.+..-+.-.++ ...++.++.+|+|||+||.+++.++..+|+.|...++.+|..-+..
T Consensus 97 ~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~n 176 (264)
T COG2819 97 AIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHN 176 (264)
T ss_pred cccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhCC
Confidence 0000 11111111 2334444443333 4668999999999999999999999999999999999998653211
Q ss_pred hccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCC--CCC------CCcHHHHHHH
Q 003363 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ--DLR------VPVSNGLQYA 782 (826)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~--D~~------vp~~~~~~~~ 782 (826)
...+....-.... + ..++.|..|.. |.. ....++.+..
T Consensus 177 --------------------------------~~~l~~~~~~~~~-~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~ 222 (264)
T COG2819 177 --------------------------------EAILREIESLKLL-K-TKRICLYIGSGELDSSRSIRMAENKQEAAELS 222 (264)
T ss_pred --------------------------------HHHhccccccccC-C-CcceEEEecccccCcchhhhhhhHHHHHHHHH
Confidence 1111111111111 2 44555554443 331 1234444555
Q ss_pred HHHHh-CCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 783 RALRE-KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 783 ~~l~~-~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+.+++ .|..+.+..+|+.+|+-. ....+..++.|+.
T Consensus 223 ~~~~~~~g~~~~f~~~~~~~H~~~----~~~~~~~al~~l~ 259 (264)
T COG2819 223 SLLEKRTGARLVFQEEPLEHHGSV----IHASLPSALRFLD 259 (264)
T ss_pred HHHhhccCCceEecccccccccch----HHHHHHHHHHhhh
Confidence 56666 677888889998888643 1233445555553
No 219
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2e-06 Score=93.27 Aligned_cols=253 Identities=15% Similarity=0.148 Sum_probs=147.7
Q ss_pred CCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecC
Q 003363 138 NENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNS 217 (826)
Q Consensus 138 ~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSP 217 (826)
.+....|.... ...+..+.|+|+|+.||.....+ .+.||+..+..++........+.| +.++|+
T Consensus 206 s~~v~~l~~~~----~~~vtSv~ws~~G~~LavG~~~g-----~v~iwD~~~~k~~~~~~~~h~~rv------g~laW~- 269 (484)
T KOG0305|consen 206 SGSVTELCSFG----EELVTSVKWSPDGSHLAVGTSDG-----TVQIWDVKEQKKTRTLRGSHASRV------GSLAWN- 269 (484)
T ss_pred CCceEEeEecC----CCceEEEEECCCCCEEEEeecCC-----eEEEEehhhccccccccCCcCcee------EEEecc-
Confidence 34445554332 15689999999999999976554 677886544444443333233333 788888
Q ss_pred CCCeEEEEeecCCCCCCCccCCCCCC-CCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEeccCCCCCC
Q 003363 218 DETLIAYVAEEPSPSKPTFSLGSTKG-GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSL 295 (826)
Q Consensus 218 Dg~~ia~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~ 295 (826)
+..+...+.+...-. ++...... ......|..-+-...|.+|......+..++.+++||....+ ...+ +....
T Consensus 270 -~~~lssGsr~~~I~~--~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~--~~H~a 344 (484)
T KOG0305|consen 270 -SSVLSSGSRDGKILN--HDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF--TEHTA 344 (484)
T ss_pred -CceEEEecCCCcEEE--EEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE--eccce
Confidence 333333332221100 00000000 00122233323345578886566666677899999984443 3334 45555
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 375 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~ 375 (826)
.+-.++|+|=-+. |+-++-.. .+..|..+|. .+|...+.......+.
T Consensus 345 AVKA~awcP~q~~----lLAsGGGs------------~D~~i~fwn~-----------------~~g~~i~~vdtgsQVc 391 (484)
T KOG0305|consen 345 AVKALAWCPWQSG----LLATGGGS------------ADRCIKFWNT-----------------NTGARIDSVDTGSQVC 391 (484)
T ss_pred eeeEeeeCCCccC----ceEEcCCC------------cccEEEEEEc-----------------CCCcEecccccCCcee
Confidence 7788999998887 77765221 2236888887 6666655555566789
Q ss_pred CceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCC
Q 003363 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 455 (826)
Q Consensus 376 ~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg 455 (826)
+..||+..+.|+..... ..++|-+|++++-.......+ +...+..++|||||
T Consensus 392 sL~Wsk~~kEi~sthG~---------s~n~i~lw~~ps~~~~~~l~g-------------------H~~RVl~la~SPdg 443 (484)
T KOG0305|consen 392 SLIWSKKYKELLSTHGY---------SENQITLWKYPSMKLVAELLG-------------------HTSRVLYLALSPDG 443 (484)
T ss_pred eEEEcCCCCEEEEecCC---------CCCcEEEEeccccceeeeecC-------------------CcceeEEEEECCCC
Confidence 99999999999876633 335777787777332211111 12235578899999
Q ss_pred CEEEEEEEeCCeEEEEEE
Q 003363 456 CTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 456 ~~l~~~~~~~~~~~l~~v 473 (826)
..|+.. ..+.+.++|.+
T Consensus 444 ~~i~t~-a~DETlrfw~~ 460 (484)
T KOG0305|consen 444 ETIVTG-AADETLRFWNL 460 (484)
T ss_pred CEEEEe-cccCcEEeccc
Confidence 977544 33445555654
No 220
>PRK10115 protease 2; Provisional
Probab=98.59 E-value=9.7e-06 Score=95.14 Aligned_cols=208 Identities=13% Similarity=0.115 Sum_probs=122.7
Q ss_pred ccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc--eEe
Q 003363 210 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQA 287 (826)
Q Consensus 210 ~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~--~~~ 287 (826)
+..+.|||||++|||..... +....+|++.|+.+|+ ...
T Consensus 129 l~~~~~Spdg~~la~~~d~~---------------------------------------G~E~~~l~v~d~~tg~~l~~~ 169 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFL---------------------------------------SRRQYGIRFRNLETGNWYPEL 169 (686)
T ss_pred EeEEEECCCCCEEEEEecCC---------------------------------------CcEEEEEEEEECCCCCCCCcc
Confidence 36789999999999985543 1245789999999987 333
Q ss_pred ccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC--cce
Q 003363 288 VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVV 365 (826)
Q Consensus 288 l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~ 365 (826)
+. . .. ..++|++||+. |+|+..... ..++.+||+.++ .++ +.+
T Consensus 170 i~---~-~~-~~~~w~~D~~~----~~y~~~~~~---------~~~~~~v~~h~l-----------------gt~~~~d~ 214 (686)
T PRK10115 170 LD---N-VE-PSFVWANDSWT----FYYVRKHPV---------TLLPYQVWRHTI-----------------GTPASQDE 214 (686)
T ss_pred cc---C-cc-eEEEEeeCCCE----EEEEEecCC---------CCCCCEEEEEEC-----------------CCChhHCe
Confidence 32 1 11 45899999999 999886321 124568999998 555 344
Q ss_pred ecCCCC-cccc-CceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC--CCCCCCcccceeeeeeeeeccCCCCCccc
Q 003363 366 NLTESI-SSAF-FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGL 441 (826)
Q Consensus 366 ~Lt~~~-~~~~-~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 441 (826)
.|..+. .... ....+.||++++..+... ....+++++.+ .+..+. +...+.+..+
T Consensus 215 lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--------~~~~~~l~~~~~~~~~~~~----------~~~~~~~~~~--- 273 (686)
T PRK10115 215 LVYEEKDDTFYVSLHKTTSKHYVVIHLASA--------TTSEVLLLDAELADAEPFV----------FLPRRKDHEY--- 273 (686)
T ss_pred EEEeeCCCCEEEEEEEcCCCCEEEEEEECC--------ccccEEEEECcCCCCCceE----------EEECCCCCEE---
Confidence 454432 2122 223355999987554442 23567777742 322111 1111111111
Q ss_pred ccCCCCCCccccCCCEEEEEEEeC-CeEEEEEEECC-CCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEe
Q 003363 442 YSSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 442 ~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~l~~vdl~-tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~ 519 (826)
.....+..+++.++.+ .+..|+.+++. .++.+.|.+.........+...++.+++.......+ ++++++
T Consensus 274 --------~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~-~l~~~~ 344 (686)
T PRK10115 274 --------SLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLT-SLRQIN 344 (686)
T ss_pred --------EEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEE-EEEEEc
Confidence 1112235677777654 56689999987 566677766633223334555577777776654443 377766
Q ss_pred ec
Q 003363 520 FV 521 (826)
Q Consensus 520 ~~ 521 (826)
+.
T Consensus 345 ~~ 346 (686)
T PRK10115 345 RK 346 (686)
T ss_pred CC
Confidence 53
No 221
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.59 E-value=1e-06 Score=91.82 Aligned_cols=235 Identities=14% Similarity=0.129 Sum_probs=136.4
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccc
Q 003363 125 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHG 202 (826)
Q Consensus 125 ~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g 202 (826)
-...+.+|.+-..+.-.+.+.... ..+....||.+|..++..+-+. .+.+|+ .|+....+.+..-.
T Consensus 235 mD~~vklW~vy~~~~~lrtf~gH~-----k~Vrd~~~s~~g~~fLS~sfD~-----~lKlwDtETG~~~~~f~~~~~~-- 302 (503)
T KOG0282|consen 235 MDGLVKLWNVYDDRRCLRTFKGHR-----KPVRDASFNNCGTSFLSASFDR-----FLKLWDTETGQVLSRFHLDKVP-- 302 (503)
T ss_pred CCceEEEEEEecCcceehhhhcch-----hhhhhhhccccCCeeeeeecce-----eeeeeccccceEEEEEecCCCc--
Confidence 344455555544444344333332 4588999999999998876553 677884 45544444444444
Q ss_pred cccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC
Q 003363 203 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 282 (826)
Q Consensus 203 ~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~ 282 (826)
..+.+.||+..++++.. .+..|..||+.+
T Consensus 303 --------~cvkf~pd~~n~fl~G~-------------------------------------------sd~ki~~wDiRs 331 (503)
T KOG0282|consen 303 --------TCVKFHPDNQNIFLVGG-------------------------------------------SDKKIRQWDIRS 331 (503)
T ss_pred --------eeeecCCCCCcEEEEec-------------------------------------------CCCcEEEEeccc
Confidence 78999999988888632 336688899988
Q ss_pred CceEeccCCCCCC-ccceEEEeeCCCCCccEEEEEeecCcceeee----------------------------eeeeccC
Q 003363 283 GEVQAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLG----------------------------IKYCYNR 333 (826)
Q Consensus 283 g~~~~l~~~~~~~-~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g----------------------------~~~~~~~ 333 (826)
|++.+- ...++ .+..+.|-|+|++ .+.++.+...+-+. +..|.+-
T Consensus 332 ~kvvqe--Yd~hLg~i~~i~F~~~g~r----FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~ 405 (503)
T KOG0282|consen 332 GKVVQE--YDRHLGAILDITFVDEGRR----FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM 405 (503)
T ss_pred hHHHHH--HHhhhhheeeeEEccCCce----EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc
Confidence 886554 34443 4557788888888 66555433211111 1112222
Q ss_pred CCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC--CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeC
Q 003363 334 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 411 (826)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~ 411 (826)
.+.|++..+... -.-...++...+ .|......|||||.+|+..+.+ ..++.|||
T Consensus 406 dN~i~ifs~~~~-------------~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd-----------G~v~~wdw 461 (503)
T KOG0282|consen 406 DNYIAIFSTVPP-------------FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD-----------GKVNFWDW 461 (503)
T ss_pred CceEEEEecccc-------------cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC-----------ccEEEeec
Confidence 233443332000 000111122222 4556788999999999866654 46999999
Q ss_pred CCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 412 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
.+-.........+. -...+.|.|-....+.+..+.|...+|
T Consensus 462 kt~kl~~~lkah~~-------------------~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 462 KTTKLVSKLKAHDQ-------------------PCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred hhhhhhhccccCCc-------------------ceEEEEecCCCcceeEecccCceeEec
Confidence 88554322222111 122456777666666777777766555
No 222
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.59 E-value=1.5e-05 Score=82.07 Aligned_cols=236 Identities=16% Similarity=0.175 Sum_probs=136.5
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeec-CCCCeEEEEeecCCCCCCCc
Q 003363 158 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN-SDETLIAYVAEEPSPSKPTF 236 (826)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wS-PDg~~ia~~~~~~~~~~~~~ 236 (826)
.|+|.++...|+|+.-. ..+++.+...+....+...+. . .++.+. +||+ |+....
T Consensus 4 gp~~d~~~g~l~~~D~~---~~~i~~~~~~~~~~~~~~~~~-~----------~G~~~~~~~g~-l~v~~~--------- 59 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIP---GGRIYRVDPDTGEVEVIDLPG-P----------NGMAFDRPDGR-LYVADS--------- 59 (246)
T ss_dssp EEEEETTTTEEEEEETT---TTEEEEEETTTTEEEEEESSS-E----------EEEEEECTTSE-EEEEET---------
T ss_pred ceEEECCCCEEEEEEcC---CCEEEEEECCCCeEEEEecCC-C----------ceEEEEccCCE-EEEEEc---------
Confidence 58999977788887543 236888775555555555544 3 466777 6654 444321
Q ss_pred cCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCC---C-CCCccceEEEeeCCCCCccE
Q 003363 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI---P-KSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~---~-~~~~~~~~~wSPDg~~~~~~ 312 (826)
..+.++|+.+++++.+... . ......++++.|||+
T Consensus 60 ------------------------------------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~----- 98 (246)
T PF08450_consen 60 ------------------------------------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN----- 98 (246)
T ss_dssp ------------------------------------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS------
T ss_pred ------------------------------------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-----
Confidence 3355669999988776311 1 234667899999998
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
|+|+........ ......||+++. + ++...+...........|||||+.|++....
T Consensus 99 ly~t~~~~~~~~------~~~~g~v~~~~~-----------------~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 99 LYVTDSGGGGAS------GIDPGSVYRIDP-----------------D-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEEEEECCBCTT------CGGSEEEEEEET-----------------T-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred EEEEecCCCccc------cccccceEEECC-----------------C-CeEEEEecCcccccceEECCcchheeecccc
Confidence 777653222100 000147999996 5 6666665555556789999999988776644
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
...|++++++....... ....+...+.... ....+++..+|+ |+++.. +...|++
T Consensus 155 ----------~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~g-------~pDG~~vD~~G~-l~va~~--~~~~I~~ 209 (246)
T PF08450_consen 155 ----------NGRIWRFDLDADGGELS-----NRRVFIDFPGGPG-------YPDGLAVDSDGN-LWVADW--GGGRIVV 209 (246)
T ss_dssp ----------TTEEEEEEEETTTCCEE-----EEEEEEE-SSSSC-------EEEEEEEBTTS--EEEEEE--TTTEEEE
T ss_pred ----------cceeEEEecccccccee-----eeeeEEEcCCCCc-------CCCcceEcCCCC-EEEEEc--CCCEEEE
Confidence 35699999875433110 0111111111100 123567888886 655432 4457888
Q ss_pred EECCCCcEEEecCCCCCeeeEEEe-ecCCEEEEEEe
Q 003363 473 VNVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSS 507 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~~~~~~~~s-~dg~~l~~~~s 507 (826)
+|.++..+..+...........|. ++.+.|+++.+
T Consensus 210 ~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 210 FDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred ECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 898744455555443345555663 46677776654
No 223
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.9e-06 Score=92.01 Aligned_cols=267 Identities=15% Similarity=0.177 Sum_probs=164.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
.....|| ....||..... -..+| ..+....+.+.. ..+ ..+.|++||+.||.....+...
T Consensus 180 ~nlldWs-s~n~laValg~------~vylW~~~s~~v~~l~~~~~~~v----------tSv~ws~~G~~LavG~~~g~v~ 242 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQ------SVYLWSASSGSVTELCSFGEELV----------TSVKWSPDGSHLAVGTSDGTVQ 242 (484)
T ss_pred hhHhhcc-cCCeEEEEecc------eEEEEecCCCceEEeEecCCCce----------EEEEECCCCCEEEEeecCCeEE
Confidence 4567889 45566664332 24566 456667777652 222 7999999999999988776543
Q ss_pred CCCccCCCCCCCCCCcc-CCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKD-CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.|+....+....... +....+..+|... ....+.+...|...|+...+...-+-......+-...|++|++.
T Consensus 243 --iwD~~~~k~~~~~~~~h~~rvg~laW~~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--- 315 (484)
T KOG0305|consen 243 --IWDVKEQKKTRTLRGSHASRVGSLAWNSS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--- 315 (484)
T ss_pred --EEehhhccccccccCCcCceeEEEeccCc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe---
Confidence 334222222222222 4444555555532 34456677889999987654221110233446778899999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
++-.+ .++.++++|.. .......++.+...+...+|+|=-+-|+-+..
T Consensus 316 -lASGg---------------nDN~~~Iwd~~----------------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 316 -LASGG---------------NDNVVFIWDGL----------------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred -eccCC---------------CccceEeccCC----------------CccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence 87766 33367777762 45567788889899999999997665553332
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC-CeEEE
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SSQVI 470 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~l 470 (826)
+.....|+.||..++....... .+..+.++.|++..+.|+.+.... ....|
T Consensus 364 --------Gs~D~~i~fwn~~~g~~i~~vd--------------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 364 --------GSADRCIKFWNTNTGARIDSVD--------------------TGSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred --------CCcccEEEEEEcCCCcEecccc--------------------cCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 2345689999988766532111 112456889999999887665433 34456
Q ss_pred EEEECCCCc-EEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 471 ISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 471 ~~vdl~tg~-~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
|.+. +.+ +..+.....-+-...++|||..++..+.+
T Consensus 416 w~~p--s~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 416 WKYP--SMKLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred Eecc--ccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 6654 433 33444444445556788888766655543
No 224
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.57 E-value=1.4e-05 Score=84.53 Aligned_cols=262 Identities=13% Similarity=0.083 Sum_probs=134.4
Q ss_pred CCCCcceEEEEEee-chhhcccceeEEEEEEeecCCCCccceeecCCcc--eecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 104 GNGNGTQAMFSISQ-PNLLANKRKKFMLSTVISKENENSVTFQWAPFPV--EMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 104 ~s~dg~~v~~~~~~-~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~--~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
.||||+.+.....- .-+..++..-.+.++++.+. .....+...+-|- ........++||||++|++.... ....
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~--p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS--PSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC--CCCE
Confidence 48999988554431 11233444456666665322 1122222211000 01224478999999998755322 2345
Q ss_pred EEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC----CCccCCCCCCCCCCccCCCCCC
Q 003363 181 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK----PTFSLGSTKGGSSDKDCNSWKG 255 (826)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 255 (826)
+-.++ ..++....+.++...+ +|.-..-.....+.||+.+.+..+...... +.|.. .......+.
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~--vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~----~~~~v~~rP---- 199 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYH--IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHP----EDEYLINHP---- 199 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcE--EEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecC----CccccccCC----
Confidence 66666 5566666666654432 222221233356789987775544332210 00000 000000011
Q ss_pred cceeec-CCCccCCCccCceEEEEEccCCceEeccC----C----CCCCccc---eEEEeeCCCCCccEEEEEeecCcce
Q 003363 256 QGDWEE-DWGETYAGKRQPSLFVININSGEVQAVKG----I----PKSLSVG---QVVWAPLNEGLHQYLVFVGWSSETR 323 (826)
Q Consensus 256 ~~~~~~-d~g~~~~~~~~~~l~v~d~~~g~~~~l~~----~----~~~~~~~---~~~wSPDg~~~~~~lvf~~~~~~~~ 323 (826)
.|.+ |....|.... ..|+++|+.+.++..... . +..+..+ .++++|||+. ++.......
T Consensus 200 --~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~----lyV~~~~~~-- 270 (352)
T TIGR02658 200 --AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR----IYLLADQRA-- 270 (352)
T ss_pred --ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE----EEEEecCCc--
Confidence 2233 3233333323 889999976655443310 0 1122222 3899999997 655342111
Q ss_pred eeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCccc
Q 003363 324 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 403 (826)
Q Consensus 324 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~ 403 (826)
+... ......|+.+|. .+++...--.-........+||||+.++|..+.. .
T Consensus 271 ~~th---k~~~~~V~ViD~-----------------~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~---------s 321 (352)
T TIGR02658 271 KWTH---KTASRFLFVVDA-----------------KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTG---------D 321 (352)
T ss_pred cccc---cCCCCEEEEEEC-----------------CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCC---------C
Confidence 1111 112348999998 6665433222234577889999999677777653 2
Q ss_pred ceEEEEeCCCCCC
Q 003363 404 DSLHRIDWPTNGN 416 (826)
Q Consensus 404 ~~l~~~d~~~~~~ 416 (826)
+.|.++|..+++.
T Consensus 322 ~~VsViD~~t~k~ 334 (352)
T TIGR02658 322 KTLYIFDAETGKE 334 (352)
T ss_pred CcEEEEECcCCeE
Confidence 5699999888654
No 225
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.57 E-value=2.4e-06 Score=98.67 Aligned_cols=100 Identities=18% Similarity=0.117 Sum_probs=67.7
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhh-------hcCCC------------CCCcc
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-------QSLPG------------KVGSQ 650 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~-------~~~~~------------~~~~~ 650 (826)
...|+||++||.... ...|...+..|+++||.|+++|+||++....... ..... +...+
T Consensus 447 ~g~P~VVllHG~~g~--~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ 524 (792)
T TIGR03502 447 DGWPVVIYQHGITGA--KENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQ 524 (792)
T ss_pred CCCcEEEEeCCCCCC--HHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHH
Confidence 346899999996544 4467788889999999999999999654422100 00000 01123
Q ss_pred hHHHHHHHHHHHH------Hc----CCCCCCcEEEEEecchHHHHHHHHHh
Q 003363 651 DVNDVLTAIDHVI------DM----GLANPSKVTVVGGSHGGFLTTHLIGQ 691 (826)
Q Consensus 651 ~~~D~~~~i~~l~------~~----~~~d~~rv~l~G~S~GG~~a~~~a~~ 691 (826)
.+.|+......+. +. ...+..+|.++||||||.++..++..
T Consensus 525 ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 525 SILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 3567766666655 11 12556899999999999999998875
No 226
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.5e-05 Score=84.58 Aligned_cols=242 Identities=14% Similarity=0.173 Sum_probs=142.7
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
...+.|||-|.+|+..-.++ +.+|.+....++-... .++ .-+.|||.+++|+.-+..+....+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G------I~lWGG~~f~r~~RF~Hp~V----------q~idfSP~EkYLVT~s~~p~~~~~ 276 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG------IALWGGESFDRIQRFYHPGV----------QFIDFSPNEKYLVTYSPEPIIVEE 276 (698)
T ss_pred eeeEEecCCceEEEEEeccc------eeeecCccHHHHHhccCCCc----------eeeecCCccceEEEecCCccccCc
Confidence 67899999999999887766 7789655433332221 233 678899999999876654422100
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCC--ccceEEEeeCCCCCccE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL--SVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~--~~~~~~wSPDg~~~~~~ 312 (826)
+ .....+|++||+.+|...+-..+..+. .-.-+.||-|+|+
T Consensus 277 -----------------------------~----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy---- 319 (698)
T KOG2314|consen 277 -----------------------------D----DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY---- 319 (698)
T ss_pred -----------------------------c----cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCce----
Confidence 0 013368999999999876542222121 2224689999998
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
++-..- ..|-+++.+ .-.....-+-....+....|||-++.|||-+..
T Consensus 320 ~Arm~~----------------~sisIyEtp----------------sf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 320 FARMTG----------------NSISIYETP----------------SFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred eEEecc----------------ceEEEEecC----------------ceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 665441 134444431 000000001123356788999999999998877
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC------
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS------ 466 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~------ 466 (826)
.+ +...++-++.++++...+. .++..+.. ..+.|-.+|.+|.+...+..
T Consensus 368 ~~------~~parvtL~evPs~~~iRt----~nlfnVsD---------------ckLhWQk~gdyLcvkvdR~tK~~~~g 422 (698)
T KOG2314|consen 368 TN------NIPARVTLMEVPSKREIRT----KNLFNVSD---------------CKLHWQKSGDYLCVKVDRHTKSKVKG 422 (698)
T ss_pred cc------CCcceEEEEecCccceeee----ccceeeec---------------cEEEeccCCcEEEEEEEeeccccccc
Confidence 53 2335677777777654321 12333322 36679999999988876542
Q ss_pred ---eEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 467 ---SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 467 ---~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
+..|++++-..=-+..+.-... +-.-.|-|.|+.+..+...
T Consensus 423 ~f~n~eIfrireKdIpve~velke~-vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 423 QFSNLEIFRIREKDIPVEVVELKES-VIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred eEeeEEEEEeeccCCCceeeecchh-eeeeeeccCCCeEEEEEcc
Confidence 2356666533222222222222 3334678889887766544
No 227
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.57 E-value=1.2e-05 Score=97.48 Aligned_cols=196 Identities=15% Similarity=0.169 Sum_probs=116.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCce--------eEEEecCCCccccccCCCcccceeecCC-CCeEEE
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL--------EKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAY 224 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~g~v~~~~~~~~~~wSPD-g~~ia~ 224 (826)
..+...+|+|||++||.....+ .+.+|+.... ....... .+. .+..+.|+|. ++.||.
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~-----~I~iwd~~~~~~~~~~~~~~~~~~~--~~~------~v~~l~~~~~~~~~las 550 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNK-----KIKIFECESIIKDGRDIHYPVVELA--SRS------KLSGICWNSYIKSQVAS 550 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCC-----EEEEEECCcccccccccccceEEec--ccC------ceeeEEeccCCCCEEEE
Confidence 3478899999999998865433 4566732110 0011111 112 2378899875 677777
Q ss_pred EeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCc-cCCCccCceEEEEEccCCceEeccCCCCCCccceEEEe
Q 003363 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE-TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 303 (826)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~-~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wS 303 (826)
.+.+.... .|+............+...+....|.+.-+. .+++..+..|.+||+.+++.... ......+..+.|+
T Consensus 551 ~~~Dg~v~--lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~--~~~~~~v~~v~~~ 626 (793)
T PLN00181 551 SNFEGVVQ--VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT--IKTKANICCVQFP 626 (793)
T ss_pred EeCCCeEE--EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE--EecCCCeEEEEEe
Confidence 76665443 3443222222333445555556677753233 45566678999999988765432 2222345677885
Q ss_pred -eCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC-cceecCCCCccccCceecC
Q 003363 304 -PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSP 381 (826)
Q Consensus 304 -PDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~Sp 381 (826)
++|+. |+..+ .+..|+.+|+. ... ....+..+...+....|+
T Consensus 627 ~~~g~~----latgs---------------~dg~I~iwD~~----------------~~~~~~~~~~~h~~~V~~v~f~- 670 (793)
T PLN00181 627 SESGRS----LAFGS---------------ADHKVYYYDLR----------------NPKLPLCTMIGHSKTVSYVRFV- 670 (793)
T ss_pred CCCCCE----EEEEe---------------CCCeEEEEECC----------------CCCccceEecCCCCCEEEEEEe-
Confidence 56776 66655 33478899972 112 234455566667788887
Q ss_pred CCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 382 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 382 DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
|+..|+..+.+ ..|.+||+..
T Consensus 671 ~~~~lvs~s~D-----------~~ikiWd~~~ 691 (793)
T PLN00181 671 DSSTLVSSSTD-----------NTLKLWDLSM 691 (793)
T ss_pred CCCEEEEEECC-----------CEEEEEeCCC
Confidence 78877765543 3588888765
No 228
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.56 E-value=4.9e-07 Score=99.78 Aligned_cols=192 Identities=15% Similarity=0.094 Sum_probs=118.2
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccC-CCccCceEEEEEccCCceEecc
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVK 289 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~-~~~~~~~l~v~d~~~g~~~~l~ 289 (826)
.+.+||||.+.|+-.+++.+.+.|... .....-....+...+..+.|.|. |-.+ +...+..--+|..+...+.++
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~--t~s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRi- 530 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLD--TWSCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRI- 530 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecc--cceeEEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhh-
Confidence 789999999999999999887754333 22222222333333334445555 3322 222334445566555666666
Q ss_pred CCCCCC-ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC
Q 003363 290 GIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 368 (826)
Q Consensus 290 ~~~~~~-~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt 368 (826)
..+++ .++-+.|.|++.+ ++-.+ .+..+..+|+. .+..+|..+
T Consensus 531 -faghlsDV~cv~FHPNs~Y----~aTGS---------------sD~tVRlWDv~----------------~G~~VRiF~ 574 (707)
T KOG0263|consen 531 -FAGHLSDVDCVSFHPNSNY----VATGS---------------SDRTVRLWDVS----------------TGNSVRIFT 574 (707)
T ss_pred -hcccccccceEEECCcccc----cccCC---------------CCceEEEEEcC----------------CCcEEEEec
Confidence 34444 5667899999996 54443 12256667761 334455556
Q ss_pred CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCC
Q 003363 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 448 (826)
Q Consensus 369 ~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 448 (826)
++.+.+...+|||+|++|+-.+.+ ..|.+||+.++.......+.. ..+.+
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed-----------~~I~iWDl~~~~~v~~l~~Ht-------------------~ti~S 624 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDED-----------GLIKIWDLANGSLVKQLKGHT-------------------GTIYS 624 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccC-----------CcEEEEEcCCCcchhhhhccc-------------------CceeE
Confidence 778889999999999999866654 458999998876643222221 24558
Q ss_pred CccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 449 NPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
+.||.||..| ++...+....+| |+
T Consensus 625 lsFS~dg~vL-asgg~DnsV~lW--D~ 648 (707)
T KOG0263|consen 625 LSFSRDGNVL-ASGGADNSVRLW--DL 648 (707)
T ss_pred EEEecCCCEE-EecCCCCeEEEE--Ec
Confidence 8899999844 444434445555 54
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.56 E-value=2.3e-05 Score=77.98 Aligned_cols=293 Identities=16% Similarity=0.153 Sum_probs=144.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
++.++.+|||||+.|+..++-. -.+.+| ...+..-.+..+ .+. .+++|.|||+.-|..+.+.=
T Consensus 92 agls~~~WSPdgrhiL~tseF~----lriTVWSL~t~~~~~~~~pK~~~----------kg~~f~~dg~f~ai~sRrDC- 156 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFD----LRITVWSLNTQKGYLLPHPKTNV----------KGYAFHPDGQFCAILSRRDC- 156 (447)
T ss_pred CcceeeeECCCcceEeeeecce----eEEEEEEeccceeEEecccccCc----------eeEEECCCCceeeeeecccH-
Confidence 4688999999999998876543 235666 222222233222 222 58999999998887765421
Q ss_pred CCCCccCCCCC---CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003363 232 SKPTFSLGSTK---GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 232 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
+.+......+ ..+..+-...--....|+||. .-|.|||.-- +.+.+ ......++-.+.|||-++.
T Consensus 157 -kdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg---------~~laVwd~~L-eykv~-aYe~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 157 -KDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG---------NWLAVWDNVL-EYKVY-AYERGLGLKFVEWSPCNQF 224 (447)
T ss_pred -HHHHHHHhhHHHHHHHhcCCCcccccCceECCCC---------cEEEEecchh-hheee-eeeeccceeEEEeccccce
Confidence 1011000000 000000001111245688873 5688887321 22211 0233456778899999987
Q ss_pred CccEEEEEeecCcceeee-eee-eccCCCceEEEEcc------------------------------cc--cchhhhhhh
Q 003363 309 LHQYLVFVGWSSETRKLG-IKY-CYNRPCALYAVRVS------------------------------LY--KSEASELEL 354 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g-~~~-~~~~~~~l~~~d~~------------------------------~~--~~~~~~~~~ 354 (826)
|+..+.+.--|-+. ..+ .+....++..+..+ .. ++-.++.+.
T Consensus 225 ----lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~ 300 (447)
T KOG4497|consen 225 ----LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQM 300 (447)
T ss_pred ----EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhh
Confidence 77766543211110 000 00000011111100 00 000000000
Q ss_pred hcCCCCCCcceecC---CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeee
Q 003363 355 KESSSEDLPVVNLT---ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (826)
Q Consensus 355 ~~~~~~~~~~~~Lt---~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 431 (826)
. ...-...+..| +..-.+...+||+|..+++..... -.+.||+||++.-+...+.... .
T Consensus 301 ~--pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~---------~PnalW~Wdlq~l~l~avLiQk---~---- 362 (447)
T KOG4497|consen 301 T--PVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK---------YPNALWLWDLQNLKLHAVLIQK---H---- 362 (447)
T ss_pred c--ceeeecccCCCCCCCcccccceeeecCCceEEeeecCC---------CCceEEEEechhhhhhhhhhhc---c----
Confidence 0 00000011111 123346778999999887644332 2367999998774432211111 0
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCC
Q 003363 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 511 (826)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~ 511 (826)
.+..+.|.|.--.|++- .+..+||.+-+.+-.........-.+....|..+|..++....+.-.
T Consensus 363 -------------piraf~WdP~~prL~vc---tg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 363 -------------PIRAFEWDPGRPRLVVC---TGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred -------------ceeEEEeCCCCceEEEE---cCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 12356788876667655 45667999988665444444443345555677778776666555433
No 230
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.56 E-value=3.7e-06 Score=87.45 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=138.6
Q ss_pred EEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCC
Q 003363 99 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENES 178 (826)
Q Consensus 99 ~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~ 178 (826)
..--.|+.||..+++ +....++.+|.. .+.....|.... +.+....|+.+|.+|+-..-.+
T Consensus 238 VT~L~Wn~~G~~Lat---------G~~~G~~riw~~--~G~l~~tl~~Hk-----gPI~slKWnk~G~yilS~~vD~--- 298 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLAT---------GSEDGEARIWNK--DGNLISTLGQHK-----GPIFSLKWNKKGTYILSGGVDG--- 298 (524)
T ss_pred cceEEecCCCCeEEE---------eecCcEEEEEec--CchhhhhhhccC-----CceEEEEEcCCCCEEEeccCCc---
Confidence 334455666666655 345667777764 333333443343 4588999999999998754322
Q ss_pred CeEEEEec--CCceeEEEecC--------------------------------------CCccccccCCCcccceeecCC
Q 003363 179 PIQFELWS--QSQLEKEFHVP--------------------------------------QTVHGSVYADGWFEGISWNSD 218 (826)
Q Consensus 179 ~~~~~i~~--~~~~~~~~~~~--------------------------------------~~~~g~v~~~~~~~~~~wSPD 218 (826)
...+|+ .++..+.+.+. .+.||.| ..+.|.|-
T Consensus 299 --ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V------~alk~n~t 370 (524)
T KOG0273|consen 299 --TTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEV------NALKWNPT 370 (524)
T ss_pred --cEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCce------EEEEECCC
Confidence 333442 12222211110 1233444 88999999
Q ss_pred CCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCcc---------CCCccCceEEEEEccCCceEecc
Q 003363 219 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET---------YAGKRQPSLFVININSGEVQAVK 289 (826)
Q Consensus 219 g~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~---------~~~~~~~~l~v~d~~~g~~~~l~ 289 (826)
|+.|+..+.+.+.+ .|.............+..-++...|+|+..-. +....+..+.+||+..|......
T Consensus 371 g~LLaS~SdD~Tlk--iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f 448 (524)
T KOG0273|consen 371 GSLLASCSDDGTLK--IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL 448 (524)
T ss_pred CceEEEecCCCeeE--eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee
Confidence 99999998888765 33322222233333344333344455543111 12234577889999988765442
Q ss_pred CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCC
Q 003363 290 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 369 (826)
Q Consensus 290 ~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 369 (826)
..+...+.+++|||||++ |++.+ +..-+..++. .+++..+-..
T Consensus 449 -~kH~~pVysvafS~~g~y----lAsGs---------------~dg~V~iws~-----------------~~~~l~~s~~ 491 (524)
T KOG0273|consen 449 -MKHQEPVYSVAFSPNGRY----LASGS---------------LDGCVHIWST-----------------KTGKLVKSYQ 491 (524)
T ss_pred -ccCCCceEEEEecCCCcE----EEecC---------------CCCeeEeccc-----------------cchheeEeec
Confidence 456668889999999999 88876 3335667776 5666665555
Q ss_pred CCccccCceecCCCCEEEEEecc
Q 003363 370 SISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 370 ~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
+.+.++...|+.+|.+|.-...+
T Consensus 492 ~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 492 GTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred CCCeEEEEEEcCCCCEEEEEecC
Confidence 66778999999999988755544
No 231
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.55 E-value=1.3e-06 Score=91.23 Aligned_cols=240 Identities=14% Similarity=0.122 Sum_probs=145.1
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEecCCceeEEEec-CCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
.++++..|.| .|..|+-... ++.-.+|.++..+...+.+.. ...+ ..++||++|+.+...+.+
T Consensus 215 kgvsai~~fp~~~hLlLS~gm--D~~vklW~vy~~~~~lrtf~gH~k~V----------rd~~~s~~g~~fLS~sfD--- 279 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLLSGGM--DGLVKLWNVYDDRRCLRTFKGHRKPV----------RDASFNNCGTSFLSASFD--- 279 (503)
T ss_pred cccchhhhccceeeEEEecCC--CceEEEEEEecCcceehhhhcchhhh----------hhhhccccCCeeeeeecc---
Confidence 5789999999 6655544322 244556666654444443321 2233 799999999999887654
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
..|.+||+++|++..- ...+-.+..+.|.||+..
T Consensus 280 -----------------------------------------~~lKlwDtETG~~~~~--f~~~~~~~cvkf~pd~~n--- 313 (503)
T KOG0282|consen 280 -----------------------------------------RFLKLWDTETGQVLSR--FHLDKVPTCVKFHPDNQN--- 313 (503)
T ss_pred -----------------------------------------eeeeeeccccceEEEE--EecCCCceeeecCCCCCc---
Confidence 4688899999988765 334445677899999977
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCccee-cCCCCccccCceecCCCCEEEEEe
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
+++++- .+..|..+|+ .++++.+ ...+.+.+....|-++|++++-.+
T Consensus 314 -~fl~G~--------------sd~ki~~wDi-----------------Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 314 -IFLVGG--------------SDKKIRQWDI-----------------RSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred -EEEEec--------------CCCcEEEEec-----------------cchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 888772 2347899998 5555433 344567788899999999987666
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccce----------------------ee------eeeeeeccCCCCCcccc
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI----------------------VD------VIPVVQCAEGDCFPGLY 442 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~----------------------~~------~~~~~~~~~~~~f~g~~ 442 (826)
.+. .+.+|++...-........ ++ +.+-........|.|..
T Consensus 362 Ddk-----------s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 362 DDK-----------SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred cCc-----------cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 553 3556665554332111110 00 11111222334566644
Q ss_pred cCCC-CCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE-EecCCCCCeeeEEEeecCC
Q 003363 443 SSSI-LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGD 500 (826)
Q Consensus 443 ~~~~-~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~-~lt~~~~~~~~~~~s~dg~ 500 (826)
..+. ..+.|||||++|+.. ++...++.+|..+-++. .+...........|.|-..
T Consensus 431 vaGys~~v~fSpDG~~l~SG---dsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTLCSG---DSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP 487 (503)
T ss_pred ccCceeeEEEcCCCCeEEee---cCCccEEEeechhhhhhhccccCCcceEEEEecCCCc
Confidence 4333 367799999976533 45556777777665443 3333333333345555433
No 232
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.50 E-value=1.4e-05 Score=80.67 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=105.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
..+...+.+|+...+|.- .+++...+|.+..+.....++ +...+| ....||.||..||..-
T Consensus 65 ~svFavsl~P~~~l~aTG--GgDD~AflW~~~~ge~~~elt----gHKDSV------t~~~FshdgtlLATGd------- 125 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATG--GGDDLAFLWDISTGEFAGELT----GHKDSV------TCCSFSHDGTLLATGD------- 125 (399)
T ss_pred CceEEEEeCCCCceEEec--CCCceEEEEEccCCcceeEec----CCCCce------EEEEEccCceEEEecC-------
Confidence 468899999966665542 222333333333333333333 233333 7999999999998741
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~ 312 (826)
-...|.|+...+|..+.. .... ....-+.|.|-+..
T Consensus 126 -------------------------------------msG~v~v~~~stg~~~~~--~~~e~~dieWl~WHp~a~i---- 162 (399)
T KOG0296|consen 126 -------------------------------------MSGKVLVFKVSTGGEQWK--LDQEVEDIEWLKWHPRAHI---- 162 (399)
T ss_pred -------------------------------------CCccEEEEEcccCceEEE--eecccCceEEEEecccccE----
Confidence 236788999888887655 3322 23456789997774
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
|++.+ .++.+|.+.++ ..+..+.+..+...+..-.|+||||+|+-...+
T Consensus 163 llAG~---------------~DGsvWmw~ip----------------~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 163 LLAGS---------------TDGSVWMWQIP----------------SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEeec---------------CCCcEEEEECC----------------CcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 44444 34578888884 336667777777788899999999999866654
Q ss_pred CCCCCCCCcccceEEEEeCCCCCC
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
..|.+||+.++..
T Consensus 212 -----------gti~~Wn~ktg~p 224 (399)
T KOG0296|consen 212 -----------GTIIVWNPKTGQP 224 (399)
T ss_pred -----------ceEEEEecCCCce
Confidence 4599999999865
No 233
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.50 E-value=1.7e-05 Score=79.03 Aligned_cols=139 Identities=16% Similarity=0.137 Sum_probs=78.6
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 102 ~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
-..||+|++||... +..+.+.+. ..-+..+| -+....+...-|+-|.-+++-+...+ + .
T Consensus 14 c~fSp~g~yiAs~~----------~yrlviRd~--~tlq~~ql-----f~cldki~yieW~ads~~ilC~~yk~-~---~ 72 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS----------RYRLVIRDS--ETLQLHQL-----FLCLDKIVYIEWKADSCHILCVAYKD-P---K 72 (447)
T ss_pred eeECCCCCeeeeee----------eeEEEEecc--chhhHHHH-----HHHHHHhhheeeeccceeeeeeeecc-c---e
Confidence 34589999998653 222333221 21122222 11234578889999998887765432 2 3
Q ss_pred EEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeec
Q 003363 182 FELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (826)
Q Consensus 182 ~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (826)
..+|.-.+.+-......+..| +..++|||||++|...++-.
T Consensus 73 vqvwsl~Qpew~ckIdeg~ag-------ls~~~WSPdgrhiL~tseF~-------------------------------- 113 (447)
T KOG4497|consen 73 VQVWSLVQPEWYCKIDEGQAG-------LSSISWSPDGRHILLTSEFD-------------------------------- 113 (447)
T ss_pred EEEEEeecceeEEEeccCCCc-------ceeeeECCCcceEeeeecce--------------------------------
Confidence 445522222222222222211 26899999999999876532
Q ss_pred CCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003363 262 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
-.|-||.+.+.+...+. .+. ..+..++|.|||+. .+..+
T Consensus 114 -----------lriTVWSL~t~~~~~~~-~pK-~~~kg~~f~~dg~f----~ai~s 152 (447)
T KOG4497|consen 114 -----------LRITVWSLNTQKGYLLP-HPK-TNVKGYAFHPDGQF----CAILS 152 (447)
T ss_pred -----------eEEEEEEeccceeEEec-ccc-cCceeEEECCCCce----eeeee
Confidence 45777777777666553 222 23456778888886 55554
No 234
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.48 E-value=5.2e-05 Score=76.75 Aligned_cols=286 Identities=13% Similarity=0.045 Sum_probs=160.0
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEe-cCCCcc
Q 003363 125 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VPQTVH 201 (826)
Q Consensus 125 ~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~-~~~~~~ 201 (826)
.+.++|... .+..+-.+|... ..+....||-||.+||...- ...+.+| ..+..+..+. .-...
T Consensus 86 D~AflW~~~---~ge~~~eltgHK-----DSVt~~~FshdgtlLATGdm-----sG~v~v~~~stg~~~~~~~~e~~di- 151 (399)
T KOG0296|consen 86 DLAFLWDIS---TGEFAGELTGHK-----DSVTCCSFSHDGTLLATGDM-----SGKVLVFKVSTGGEQWKLDQEVEDI- 151 (399)
T ss_pred ceEEEEEcc---CCcceeEecCCC-----CceEEEEEccCceEEEecCC-----CccEEEEEcccCceEEEeecccCce-
Confidence 355666643 333556666665 56899999999999987422 2245555 3333333332 11222
Q ss_pred ccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc
Q 003363 202 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 281 (826)
Q Consensus 202 g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 281 (826)
.=+.|.|-+..|++.+++.. .+.|........+....+..-..-+.|.||+...+.+..+..|.+||+.
T Consensus 152 ---------eWl~WHp~a~illAG~~DGs--vWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k 220 (399)
T KOG0296|consen 152 ---------EWLKWHPRAHILLAGSTDGS--VWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK 220 (399)
T ss_pred ---------EEEEecccccEEEeecCCCc--EEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecC
Confidence 56789998888887777664 3556554444445555666666778899996666777778999999999
Q ss_pred CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCC
Q 003363 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (826)
Q Consensus 282 ~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (826)
+|.+....+.........+.++.+|. +++.++.. +..+.+.. .+
T Consensus 221 tg~p~~~~~~~e~~~~~~~~~~~~~~-----~~~~g~~e--------------~~~~~~~~-----------------~s 264 (399)
T KOG0296|consen 221 TGQPLHKITQAEGLELPCISLNLAGS-----TLTKGNSE--------------GVACGVNN-----------------GS 264 (399)
T ss_pred CCceeEEecccccCcCCccccccccc-----eeEeccCC--------------ccEEEEcc-----------------cc
Confidence 99765431111222333445666666 44555322 23333332 22
Q ss_pred CcceecCC---------C---CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeee
Q 003363 362 LPVVNLTE---------S---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (826)
Q Consensus 362 ~~~~~Lt~---------~---~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 429 (826)
|++..... . ...+.+..||.+=...|..+. ...|.+||+.+...+.+-....
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v-----------dG~i~iyD~a~~~~R~~c~he~----- 328 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV-----------DGTIAIYDLAASTLRHICEHED----- 328 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc-----------cceEEEEecccchhheeccCCC-----
Confidence 22222111 1 122333344443332222222 2568899988866554333222
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC-CCCeeeEEEeecCCEEEEEE
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~-~~~~~~~~~s~dg~~l~~~~ 506 (826)
++..+.|.+ ..+|+ ++.. +..++.+|..+|+..-.-.+ ...+....++++++.++.++
T Consensus 329 ---------------~V~~l~w~~-t~~l~-t~c~--~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 329 ---------------GVTKLKWLN-TDYLL-TACA--NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred ---------------ceEEEEEcC-cchhe-eecc--CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEec
Confidence 234566877 44454 4333 34667778889987754333 33344446677776555443
No 235
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=1.9e-05 Score=78.27 Aligned_cols=180 Identities=14% Similarity=0.098 Sum_probs=100.0
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|.+|++.+..+..+ -.........+.||||+. |+..+...+. .++.+-.+.+ +.-
T Consensus 209 t~i~lw~lkGq~L~~i--dtnq~~n~~aavSP~GRF----ia~~gFTpDV---------------kVwE~~f~kd--G~f 265 (420)
T KOG2096|consen 209 TKICLWDLKGQLLQSI--DTNQSSNYDAAVSPDGRF----IAVSGFTPDV---------------KVWEPIFTKD--GTF 265 (420)
T ss_pred CcEEEEecCCceeeee--ccccccccceeeCCCCcE----EEEecCCCCc---------------eEEEEEeccC--cch
Confidence 6799999986555555 223345567889999998 8888754443 2222211100 000
Q ss_pred hhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC--CC-CCCcccceeeeeee
Q 003363 353 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NG-NFSSLEKIVDVIPV 429 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~--~~-~~~~~~~~~~~~~~ 429 (826)
+ +-...-.|..+...+...+||++.++++..|.+. ..+||-.|..= ++ ...+-.+. .++
T Consensus 266 q------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG---------~wriwdtdVrY~~~qDpk~Lk~g~---~pl 327 (420)
T KOG2096|consen 266 Q------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG---------KWRIWDTDVRYEAGQDPKILKEGS---APL 327 (420)
T ss_pred h------hhhhhheeccchhheeeeeeCCCcceeEEEecCC---------cEEEeeccceEecCCCchHhhcCC---cch
Confidence 0 1123345666777789999999999999888663 34454443321 11 11111110 000
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC--CCCeeeEEEeecCCEEEEEEe
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~--~~~~~~~~~s~dg~~l~~~~s 507 (826)
+ -. .....++..+|+|+.|.++. ++..++| ...+|+...-... .+.++...|+++|++++.+..
T Consensus 328 --~-----aa---g~~p~RL~lsP~g~~lA~s~--gs~l~~~--~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 328 --H-----AA---GSEPVRLELSPSGDSLAVSF--GSDLKVF--ASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred --h-----hc---CCCceEEEeCCCCcEEEeec--CCceEEE--EcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 0 00 01234678899998665432 3444444 4445654433222 235677889999998876654
No 236
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=1.8e-06 Score=85.19 Aligned_cols=203 Identities=14% Similarity=0.120 Sum_probs=138.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEE-ecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..+....||-|...||..+.+ |.-.+|.+..+.-.++.- ..+.++ .+++||.|+..|...+.+.+.+
T Consensus 264 ~aVlci~FSRDsEMlAsGsqD--GkIKvWri~tG~ClRrFdrAHtkGv----------t~l~FSrD~SqiLS~sfD~tvR 331 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQD--GKIKVWRIETGQCLRRFDRAHTKGV----------TCLSFSRDNSQILSASFDQTVR 331 (508)
T ss_pred cceEEEeecccHHHhhccCcC--CcEEEEEEecchHHHHhhhhhccCe----------eEEEEccCcchhhcccccceEE
Confidence 358889999999999876543 333344444433333322 123455 7999999999999888776543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec-cCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.- ....++.-+....+.+++....|.+|+...++...+..+.||+..+++...- +..+.+..+..+..-|....
T Consensus 332 iH--GlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe--- 406 (508)
T KOG0275|consen 332 IH--GLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE--- 406 (508)
T ss_pred Ee--ccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc---
Confidence 21 1223444456678899999999999977777777889999999888764332 22344566777777776654
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC---CccccCceecCCCCEEEE
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES---ISSAFFPRFSPDGKFLVF 388 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~---~~~~~~p~~SpDG~~l~f 388 (826)
-..++ ||.+.+|++++ .+..++..+.+ .+.......||.|.+++.
T Consensus 407 -h~iVC--------------Nrsntv~imn~-----------------qGQvVrsfsSGkREgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 407 -HFIVC--------------NRSNTVYIMNM-----------------QGQVVRSFSSGKREGGDFINAILSPKGEWIYC 454 (508)
T ss_pred -eEEEE--------------cCCCeEEEEec-----------------cceEEeeeccCCccCCceEEEEecCCCcEEEE
Confidence 33333 46668999998 66666666665 234456788999999987
Q ss_pred EeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 389 LSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 389 ~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
+..+ .-||.+...+|+.
T Consensus 455 igED-----------~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 455 IGED-----------GVLYCFSVLSGKL 471 (508)
T ss_pred EccC-----------cEEEEEEeecCce
Confidence 7755 3588888877765
No 237
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.46 E-value=6.4e-07 Score=89.42 Aligned_cols=168 Identities=19% Similarity=0.186 Sum_probs=81.6
Q ss_pred CCcEEEEEcCCCCCCCCccchH----HHHHHHHCCcEEEEECCCCCC--CCchh---------hh-hcCCCCCCc-----
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSK----SLAFLSSVGYSLLIVNYRGSL--GFGEE---------AL-QSLPGKVGS----- 649 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~----~~~~la~~G~~Vl~~d~rG~~--g~G~~---------~~-~~~~~~~~~----- 649 (826)
+.+-||++||...+ ...|.. ....|.+.++..+.+|-+-.. +.+-. .. ......|..
T Consensus 3 ~k~riLcLHG~~~n--a~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYGQN--AEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT----HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCCcC--HHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 45779999996654 334443 333444447888888843211 11100 00 111111211
Q ss_pred chHHHHHHHHHHHHH----cCCCCCCcEEEEEecchHHHHHHHHHhC--------CCceeEEEecCCccchhhhccCCCC
Q 003363 650 QDVNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNLALMVGTTDI 717 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~----~~~~d~~rv~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~p~~~~~~~~~~~~~ 717 (826)
....++.++++++.+ ++. -.+|+|+|.||.+|+.++... ...|+.+|+.++.......
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GP----fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------ 150 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGP----FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------ 150 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-------
T ss_pred ccccCHHHHHHHHHHHHHhcCC----eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh------
Confidence 124455555555544 332 358999999999999887532 2257888888875421100
Q ss_pred CCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEe
Q 003363 718 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 797 (826)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 797 (826)
........+|++|+|-++|++|..++.+.++.+++..... .+++..
T Consensus 151 -------------------------------~~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h 196 (212)
T PF03959_consen 151 -------------------------------YQELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEH 196 (212)
T ss_dssp -------------------------------GTTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEE
T ss_pred -------------------------------hhhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEE
Confidence 0000023457899999999999999999999999999874 566666
Q ss_pred CCCCCCCC
Q 003363 798 PNDVHGIE 805 (826)
Q Consensus 798 p~~~H~~~ 805 (826)
+ +||.+.
T Consensus 197 ~-gGH~vP 203 (212)
T PF03959_consen 197 D-GGHHVP 203 (212)
T ss_dssp S-SSSS--
T ss_pred C-CCCcCc
Confidence 5 578764
No 238
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.45 E-value=3e-06 Score=89.73 Aligned_cols=248 Identities=14% Similarity=0.105 Sum_probs=132.3
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhh-----cCCCCCC
Q 003363 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-----SLPGKVG 648 (826)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~-----~~~~~~~ 648 (826)
..+.+.++.|+..+..++.|.+++.||...... ........++..++.++..+....++.+...+. .......
T Consensus 31 ~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 108 (299)
T COG1073 31 IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKE--QSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFS 108 (299)
T ss_pred ceeeeEEEecCCCCccccCceEEeccCcccccc--CcchHHHHhhhceeEEeeeccccccccccccccccCccccccccc
Confidence 557788888886544478999999999654432 222266778888999888875111111000000 0000000
Q ss_pred -cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC---ceeEEEecCCccchhhhccC-------CCC
Q 003363 649 -SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVGT-------TDI 717 (826)
Q Consensus 649 -~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~~~~~~-------~~~ 717 (826)
.....+....+..-........++....|.+.|+..+...+...+. ..+.++...+.-........ ...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~~~~~~~ 188 (299)
T COG1073 109 AAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPELAREL 188 (299)
T ss_pred hhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccchHHHHhh
Confidence 0000000001111000111223678888888888888777766542 22222221111110000000 000
Q ss_pred CCchhhhhccCcC--CccCCCCCChhhHHHHhhcCcccccCCCC-CcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEE
Q 003363 718 PDWCYVESYGSKG--KDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 794 (826)
Q Consensus 718 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 794 (826)
.++.......... ........... ...+...++...+.++. +|+|++||..|..||...+..+++..+.. +.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~ 265 (299)
T COG1073 189 IDYLITPGGFAPLPAPEAPLDTLPLR-AVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--PKKL 265 (299)
T ss_pred hhhhccCCCCCCCCcccccccccccc-hhhhccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC--CceE
Confidence 0000000000000 00000011111 23355666677777777 79999999999999999999999998875 6788
Q ss_pred EEeCCCCCCCCCCCCH--HHHHHHHHHHHHHHcC
Q 003363 795 IVFPNDVHGIERPQSD--FESFLNIGLWFKKYCK 826 (826)
Q Consensus 795 ~~~p~~~H~~~~~~~~--~~~~~~i~~w~~~~l~ 826 (826)
+++++++|........ .+.+..+.+||.+++.
T Consensus 266 ~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l~ 299 (299)
T COG1073 266 LFVPGGGHIDLYDNPPAVEQALDKLAEFLERHLL 299 (299)
T ss_pred EEecCCccccccCccHHHHHHHHHHHHHHHHhcC
Confidence 8899999987753333 3788999999999874
No 239
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=5.7e-05 Score=73.57 Aligned_cols=201 Identities=15% Similarity=0.208 Sum_probs=117.7
Q ss_pred cccEEEEeCCC-CCeEEEEecCCCCCCeEEEEecCC---ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 154 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWSQS---QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 154 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
..+...+|+|- |..||..... ..+++|..+ ...-.+.+..+.+-.| ..++|||.|+.||..+.+.
T Consensus 15 ~r~W~~awhp~~g~ilAscg~D-----k~vriw~~~~~~s~~ck~vld~~hkrsV------RsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTD-----KAVRIWSTSSGDSWTCKTVLDDGHKRSV------RSVAWSPHGRYLASASFDA 83 (312)
T ss_pred CcEEEEEeccCCceEEEeecCC-----ceEEEEecCCCCcEEEEEeccccchhee------eeeeecCCCcEEEEeeccc
Confidence 35888999998 8766665433 367788332 2222233333433344 8999999999999887654
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCC-CCCccceEEEeeCCCC
Q 003363 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEG 308 (826)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~-~~~~~~~~~wSPDg~~ 308 (826)
+ ..+|.-..++.+.+.... .+..+-.++||++|+.
T Consensus 84 t--------------------------------------------~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~ 119 (312)
T KOG0645|consen 84 T--------------------------------------------VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY 119 (312)
T ss_pred e--------------------------------------------EEEeecCCCceeEEeeeeccccceeEEEEcCCCCE
Confidence 2 233333344433332122 2346778999999998
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc---ceecCCCCccccCceecCCCCE
Q 003363 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDGKF 385 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~~~~~p~~SpDG~~ 385 (826)
|+..+ |+..+|++.++ ++.+ .-.|.++...+-...|.|--..
T Consensus 120 ----LATCS---------------RDKSVWiWe~d----------------eddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 120 ----LATCS---------------RDKSVWIWEID----------------EDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred ----EEEee---------------CCCeEEEEEec----------------CCCcEEEEeeeccccccccEEEEcCCcce
Confidence 88877 44467777763 3333 3467778888899999997665
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (826)
|+-.+.+ +.|.+|+-..+.. ...+..+.. ....+-...|.++|.+|+ +.+.+
T Consensus 165 L~S~SYD-----------nTIk~~~~~~ddd-------W~c~~tl~g---------~~~TVW~~~F~~~G~rl~-s~sdD 216 (312)
T KOG0645|consen 165 LFSCSYD-----------NTIKVYRDEDDDD-------WECVQTLDG---------HENTVWSLAFDNIGSRLV-SCSDD 216 (312)
T ss_pred eEEeccC-----------CeEEEEeecCCCC-------eeEEEEecC---------ccceEEEEEecCCCceEE-EecCC
Confidence 5544444 3355554321221 111111100 000122457888998774 45667
Q ss_pred CeEEEEE
Q 003363 466 SSQVIIS 472 (826)
Q Consensus 466 ~~~~l~~ 472 (826)
+...||+
T Consensus 217 ~tv~Iw~ 223 (312)
T KOG0645|consen 217 GTVSIWR 223 (312)
T ss_pred cceEeee
Confidence 7888888
No 240
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.44 E-value=1.4e-05 Score=77.15 Aligned_cols=227 Identities=14% Similarity=0.129 Sum_probs=130.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..+..+.|.-||.+||-.+... ...++.+... +.+.... .+.++.| ..+.|+|-..-+++++.
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dk--tv~v~n~e~~---r~~~~~~~~gh~~sv------dql~w~~~~~d~~atas----- 84 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDK--TVSVWNLERD---RFRKELVYRGHTDSV------DQLCWDPKHPDLFATAS----- 84 (313)
T ss_pred hcceEEEEcccCceeeecccCC--ceEEEEecch---hhhhhhcccCCCcch------hhheeCCCCCcceEEec-----
Confidence 3478899999999999765532 2233333322 3333322 3444455 78889987666655543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
+...|.+||+..++.... +.........+|||||++
T Consensus 85 --------------------------------------~dk~ir~wd~r~~k~~~~--i~~~~eni~i~wsp~g~~---- 120 (313)
T KOG1407|consen 85 --------------------------------------GDKTIRIWDIRSGKCTAR--IETKGENINITWSPDGEY---- 120 (313)
T ss_pred --------------------------------------CCceEEEEEeccCcEEEE--eeccCcceEEEEcCCCCE----
Confidence 225788999988887766 444555667899999999
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
+++.. ++..|-.+|. ..-....-.+.........|+-++. +.|+.+-
T Consensus 121 ~~~~~---------------kdD~it~id~-----------------r~~~~~~~~~~~~e~ne~~w~~~nd-~Fflt~G 167 (313)
T KOG1407|consen 121 IAVGN---------------KDDRITFIDA-----------------RTYKIVNEEQFKFEVNEISWNNSND-LFFLTNG 167 (313)
T ss_pred EEEec---------------CcccEEEEEe-----------------cccceeehhcccceeeeeeecCCCC-EEEEecC
Confidence 88876 3336777776 2222222222233456678886655 5566543
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
.++ +.++.++.=+... .+- . +..+-.-+.|+|+|+++...+. +..+-+
T Consensus 168 --------lG~--v~ILsypsLkpv~---------si~-A---------H~snCicI~f~p~GryfA~GsA---DAlvSL 215 (313)
T KOG1407|consen 168 --------LGC--VEILSYPSLKPVQ---------SIK-A---------HPSNCICIEFDPDGRYFATGSA---DALVSL 215 (313)
T ss_pred --------Cce--EEEEecccccccc---------ccc-c---------CCcceEEEEECCCCceEeeccc---cceeec
Confidence 233 4555555422211 000 0 0011224568999998765432 333444
Q ss_pred EECCCCc-EEEecCCCCCeeeEEEeecCCEEEEE
Q 003363 473 VNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAV 505 (826)
Q Consensus 473 vdl~tg~-~~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (826)
+|++.-- ++.++.-+..+....||-||+.|+-.
T Consensus 216 WD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 216 WDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred cChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 4554322 34455556666667788888865543
No 241
>PRK04940 hypothetical protein; Provisional
Probab=98.44 E-value=6.1e-06 Score=77.69 Aligned_cols=119 Identities=10% Similarity=0.116 Sum_probs=74.4
Q ss_pred CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcC
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 750 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 750 (826)
++++|+|.|+|||.|.+++.++. + .+|+++|.+....... ...+.. .. +. .-..+..+.+..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~----------~~ig~~-~~-y~-~~~~~h~~eL~~-- 121 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENME----------GKIDRP-EE-YA-DIATKCVTNFRE-- 121 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHH----------HHhCCC-cc-hh-hhhHHHHHHhhh--
Confidence 46999999999999999999874 3 5667888776422100 001110 00 11 001111222220
Q ss_pred cccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 751 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 751 p~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+-.-..+++..+.|+.+++.++.+.+... .+..+.+|++|.|...+ +....|.+|+.
T Consensus 122 ------~~p~r~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~~fe---~~l~~I~~F~~ 178 (180)
T PRK04940 122 ------KNRDRCLVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFKNIS---PHLQRIKAFKT 178 (180)
T ss_pred ------cCcccEEEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCCCHH---HHHHHHHHHHh
Confidence 11134699999999999988887666432 25779999999987443 56778888875
No 242
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=0.00015 Score=77.36 Aligned_cols=297 Identities=13% Similarity=0.120 Sum_probs=158.2
Q ss_pred cCCCCcceEE-EEEeechhh-cccceeEEEEEEeecCCCCccceee--cCCcceecccEEEEeCCCCCeEEEEecCCCCC
Q 003363 103 SGNGNGTQAM-FSISQPNLL-ANKRKKFMLSTVISKENENSVTFQW--APFPVEMTGASAVVPSPSGSKLLVVRNPENES 178 (826)
Q Consensus 103 ~~s~dg~~v~-~~~~~~~~~-~~~~~~~l~~~~i~~~~~~~~~lt~--~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~ 178 (826)
..||.-++++ |+..-.... .+.....|.+|+|.++ ...+-+.. .+. .-=....||-|++++|-+..+.
T Consensus 256 dfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG-~lkrsF~~~~~~~----~~WP~frWS~DdKy~Arm~~~s--- 327 (698)
T KOG2314|consen 256 DFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG-LLKRSFPVIKSPY----LKWPIFRWSHDDKYFARMTGNS--- 327 (698)
T ss_pred ecCCccceEEEecCCccccCcccCCCceEEEEEcccc-chhcceeccCCCc----cccceEEeccCCceeEEeccce---
Confidence 4477777664 322111101 1122346777777433 22222211 111 1134578999999998765432
Q ss_pred CeEEEEecCCceeEEEecCC-CccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 003363 179 PIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 257 (826)
Q Consensus 179 ~~~~~i~~~~~~~~~~~~~~-~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (826)
+.|..... -.+.+... .+. .+.+++|||-+..|||-......
T Consensus 328 ---isIyEtps-f~lld~Kslki~-------gIr~FswsP~~~llAYwtpe~~~-------------------------- 370 (698)
T KOG2314|consen 328 ---ISIYETPS-FMLLDKKSLKIS-------GIRDFSWSPTSNLLAYWTPETNN-------------------------- 370 (698)
T ss_pred ---EEEEecCc-eeeecccccCCc-------cccCcccCCCcceEEEEcccccC--------------------------
Confidence 23332111 11222111 111 12689999999999998654421
Q ss_pred eeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCccee-eeeeeeccCCCc
Q 003363 258 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK-LGIKYCYNRPCA 336 (826)
Q Consensus 258 ~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~-~g~~~~~~~~~~ 336 (826)
....+-++.+-++...+.. --.++....+.|--+|++ |.|-..+..-.+ .|..+ +-.
T Consensus 371 -------------~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdy----LcvkvdR~tK~~~~g~f~----n~e 428 (698)
T KOG2314|consen 371 -------------IPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDY----LCVKVDRHTKSKVKGQFS----NLE 428 (698)
T ss_pred -------------CcceEEEEecCccceeeec-cceeeeccEEEeccCCcE----EEEEEEeeccccccceEe----eEE
Confidence 1123444555555433321 111234456789999999 988765543322 22222 236
Q ss_pred eEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 337 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
|++++= ..-.+..+ +-...+...+|-|.|.+++.++.... ..+-+.|-+.......
T Consensus 429 Ifrire-----------------KdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~------k~tvsfY~~e~~~~~~ 484 (698)
T KOG2314|consen 429 IFRIRE-----------------KDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTV------KNTVSFYAVETNIKKP 484 (698)
T ss_pred EEEeec-----------------cCCCceee-ecchheeeeeeccCCCeEEEEEcccc------ccceeEEEeecCCCch
Confidence 777762 11122222 12234677899999999999987753 1223444443222111
Q ss_pred CCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CeeeEEE
Q 003363 417 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLL 495 (826)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~-~~~~~~~ 495 (826)
.+....+. .....+.|||.|+.+++.+-.+....|.-+|.+-...+.+..... ..+...|
T Consensus 485 -~lVk~~dk------------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veW 545 (698)
T KOG2314|consen 485 -SLVKELDK------------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEW 545 (698)
T ss_pred -hhhhhhcc------------------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceE
Confidence 11111110 022467899999988888776667788888876445544433222 3455678
Q ss_pred eecCCEEEEEEeCC
Q 003363 496 TLDGDNIIAVSSSP 509 (826)
Q Consensus 496 s~dg~~l~~~~s~~ 509 (826)
+|.|++++...+..
T Consensus 546 DPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 546 DPTGRYVVTSSSSW 559 (698)
T ss_pred CCCCCEEEEeeehh
Confidence 99999888777654
No 243
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.41 E-value=6.3e-05 Score=73.08 Aligned_cols=234 Identities=12% Similarity=0.091 Sum_probs=142.9
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.....+.-+|..|...+... ...+| ..|+ ++-.. .+..|.| .++..+-|.++++..+
T Consensus 13 lTqiKyN~eGDLlFscaKD~-----~~~vw~s~nGe--rlGty-~GHtGav------W~~Did~~s~~liTGS------- 71 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDS-----TPTVWYSLNGE--RLGTY-DGHTGAV------WCCDIDWDSKHLITGS------- 71 (327)
T ss_pred cceEEecCCCcEEEEecCCC-----CceEEEecCCc--eeeee-cCCCceE------EEEEecCCcceeeecc-------
Confidence 55678888998776554432 44566 2332 33222 3555555 4555555666665533
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
.+..+.+||+++|+.... ......+..+.|+++|.. +
T Consensus 72 -------------------------------------AD~t~kLWDv~tGk~la~--~k~~~~Vk~~~F~~~gn~----~ 108 (327)
T KOG0643|consen 72 -------------------------------------ADQTAKLWDVETGKQLAT--WKTNSPVKRVDFSFGGNL----I 108 (327)
T ss_pred -------------------------------------ccceeEEEEcCCCcEEEE--eecCCeeEEEeeccCCcE----E
Confidence 446789999999998776 566667889999999998 8
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEecc
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
++.....- ...+.|..+|+...+.. ..+.+ ..++......+....|+|-|+.|+....+
T Consensus 109 l~~tD~~m----------g~~~~v~~fdi~~~~~~----------~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 109 LASTDKQM----------GYTCFVSVFDIRDDSSD----------IDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED 168 (327)
T ss_pred EEEehhhc----------CcceEEEEEEccCChhh----------hcccCceEEecCCccceeeeeecccCCEEEEecCC
Confidence 88763221 13456777777432110 12333 45666566678889999999999866544
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
..|-.||+.+|....-+... +...+..+.+++|.. .+++++.+....|+
T Consensus 169 -----------G~is~~da~~g~~~v~s~~~------------------h~~~Ind~q~s~d~T-~FiT~s~Dttakl~- 217 (327)
T KOG0643|consen 169 -----------GSISIYDARTGKELVDSDEE------------------HSSKINDLQFSRDRT-YFITGSKDTTAKLV- 217 (327)
T ss_pred -----------CcEEEEEcccCceeeechhh------------------hccccccccccCCcc-eEEecccCccceee-
Confidence 45888998886542211111 223567889999986 55666666666655
Q ss_pred EECCCCcEEEecCCCCCeeeEEEeecCCEEEEE
Q 003363 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 505 (826)
Q Consensus 473 vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (826)
|..+-++.+--.....+...+++|--+.++..
T Consensus 218 -D~~tl~v~Kty~te~PvN~aaisP~~d~Vilg 249 (327)
T KOG0643|consen 218 -DVRTLEVLKTYTTERPVNTAAISPLLDHVILG 249 (327)
T ss_pred -eccceeeEEEeeecccccceecccccceEEec
Confidence 55455544432222334445677765555544
No 244
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.41 E-value=1.1e-05 Score=82.50 Aligned_cols=164 Identities=18% Similarity=0.212 Sum_probs=94.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCce------e--------EEEe-cCCCccccccCCCcccceeecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL------E--------KEFH-VPQTVHGSVYADGWFEGISWNSD 218 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~------~--------~~~~-~~~~~~g~v~~~~~~~~~~wSPD 218 (826)
..+....|||+|..||...+.+ ...+|..+.. + .++. .-.+. .+....+.|+||
T Consensus 66 ~aVN~vRf~p~gelLASg~D~g-----~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h------~~diydL~Ws~d 134 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGDGG-----EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGH------RDDIYDLAWSPD 134 (434)
T ss_pred ceeEEEEEcCCcCeeeecCCCc-----eEEEEEecCcCCccccchhhhCccceEEEEEeccc------ccchhhhhccCC
Confidence 4588999999999999754432 4566732210 0 0000 00111 123368899999
Q ss_pred CCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccc
Q 003363 219 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVG 298 (826)
Q Consensus 219 g~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~ 298 (826)
+..+++.+- .+.+++||+..|.+.... -.....+.
T Consensus 135 ~~~l~s~s~--------------------------------------------dns~~l~Dv~~G~l~~~~-~dh~~yvq 169 (434)
T KOG1009|consen 135 SNFLVSGSV--------------------------------------------DNSVRLWDVHAGQLLAIL-DDHEHYVQ 169 (434)
T ss_pred Cceeeeeec--------------------------------------------cceEEEEEeccceeEeec-cccccccc
Confidence 999988643 367899999999887763 34455788
Q ss_pred eEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCC---cccc
Q 003363 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI---SSAF 375 (826)
Q Consensus 299 ~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~---~~~~ 375 (826)
.++|.|-++. |+-.+....++..+.. -...++.+... ++..+......+...+|.... ...+
T Consensus 170 gvawDpl~qy----v~s~s~dr~~~~~~~~----~~~~~~~~~~~-------~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 170 GVAWDPLNQY----VASKSSDRHPEGFSAK----LKQVIKRHGLD-------IMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eeecchhhhh----hhhhccCcccceeeee----eeeeeeeeeee-------EeeecccCCCCcceeeeeecCchhhhhh
Confidence 8999999888 7766543322222221 11123333211 011111111334455565442 2357
Q ss_pred CceecCCCCEEEE
Q 003363 376 FPRFSPDGKFLVF 388 (826)
Q Consensus 376 ~p~~SpDG~~l~f 388 (826)
.++|+|||..|+-
T Consensus 235 RlsfTPdG~llvt 247 (434)
T KOG1009|consen 235 RLSFTPDGSLLVT 247 (434)
T ss_pred hcccCCCCcEEEc
Confidence 7899999987653
No 245
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.37 E-value=4.1e-06 Score=85.60 Aligned_cols=241 Identities=11% Similarity=0.049 Sum_probs=151.5
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.++...||+||.+++..... ..+.+|. ..+..+.++. .| ++.+.+++|||...+.+..+++.+.+.
T Consensus 140 ~Vr~m~ws~~g~wmiSgD~g-----G~iKyWqpnmnnVk~~~a---hh-----~eaIRdlafSpnDskF~t~SdDg~iki 206 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMISGDKG-----GMIKYWQPNMNNVKIIQA---HH-----AEAIRDLAFSPNDSKFLTCSDDGTIKI 206 (464)
T ss_pred cceeEEEccCCCEEEEcCCC-----ceEEecccchhhhHHhhH---hh-----hhhhheeccCCCCceeEEecCCCeEEE
Confidence 48999999999999764332 3777883 2233333322 11 123389999999888888888887654
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
+.+. ..++......+.--+...+|.|.-|...++.+.+-+-+||..+|....-. ......+-.+.|+|+|.+ |
T Consensus 207 Wdf~--~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl-h~HKntVl~~~f~~n~N~----L 279 (464)
T KOG0284|consen 207 WDFR--MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL-HGHKNTVLAVKFNPNGNW----L 279 (464)
T ss_pred Eecc--CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh-hhccceEEEEEEcCCCCe----e
Confidence 4333 22333333334333446678888788888888889999999988654321 333457889999999987 8
Q ss_pred EEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccC
Q 003363 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 314 vf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~ 393 (826)
+-.+ +++.+..+|+. .-.+......+...+....|+|=-.-|+....-
T Consensus 280 lt~s---------------kD~~~kv~DiR----------------~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~- 327 (464)
T KOG0284|consen 280 LTGS---------------KDQSCKVFDIR----------------TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS- 327 (464)
T ss_pred EEcc---------------CCceEEEEehh----------------HhHHHHHhhcchhhheeeccccccccceeeccC-
Confidence 7766 45567778872 123455555666678889999977766433322
Q ss_pred CCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 394 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
..+|..+.+...+....... .++..+-++.|.|=|. |+.+.+.+.....|.-
T Consensus 328 ---------Dgsvvh~~v~~~~p~~~i~~------------------AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 328 ---------DGSVVHWVVGLEEPLGEIPP------------------AHDGEIWSLAYHPLGH-ILATGSNDRTVRFWTR 379 (464)
T ss_pred ---------CCceEEEeccccccccCCCc------------------ccccceeeeeccccce-eEeecCCCcceeeecc
Confidence 24566666653332211110 0222344778999885 7677666666666654
Q ss_pred EC
Q 003363 474 NV 475 (826)
Q Consensus 474 dl 475 (826)
+.
T Consensus 380 ~r 381 (464)
T KOG0284|consen 380 NR 381 (464)
T ss_pred CC
Confidence 43
No 246
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=98.33 E-value=3.8e-05 Score=81.04 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=89.5
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCC--CcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh-hccCCCC--CCch
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTDI--PDWC 721 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~--~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-~~~~~~~--~~~~ 721 (826)
+|-..+.|++.|+.++.++..-.. -++.++|+|+||+++...+.-.|-.+.+++-.++.+.... +.-..++ ..+.
T Consensus 158 ~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~ 237 (403)
T PF11144_consen 158 FGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYI 237 (403)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccc
Confidence 344456788888888888633222 4899999999999999999888999999887776543211 1100000 0000
Q ss_pred hhhhc---cCcC----CccCCC----CCChhhHHHHhhcCcc--cc---cCCC--CCcEEEEEeCCCCCCCcHHHHHHHH
Q 003363 722 YVESY---GSKG----KDSFTE----SPSVEDLTRFHSKSPI--SH---ISKV--KTPTIFLLGAQDLRVPVSNGLQYAR 783 (826)
Q Consensus 722 ~~~~~---~~~~----~~~~~~----~~~~~~~~~~~~~sp~--~~---~~~i--~~PvLii~G~~D~~vp~~~~~~~~~ 783 (826)
..... .... .+.++. .|..-..+.+.-++.+ .+ ..+. ++-.+..|+..|+.+|.++-.++++
T Consensus 238 ~~~~~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~ 317 (403)
T PF11144_consen 238 CSGEFFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYE 317 (403)
T ss_pred ccccccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHH
Confidence 00000 0000 000100 0110011111111111 11 1122 3456778999999999999999999
Q ss_pred HHHhCCCCEEEEEeCC
Q 003363 784 ALREKGVETKVIVFPN 799 (826)
Q Consensus 784 ~l~~~g~~~~~~~~p~ 799 (826)
.+++.|.+++++.+.+
T Consensus 318 ~l~~lgfda~l~lIkd 333 (403)
T PF11144_consen 318 ILKNLGFDATLHLIKD 333 (403)
T ss_pred HHHHcCCCeEEEEecC
Confidence 9999999999999843
No 247
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.32 E-value=1.3e-05 Score=82.82 Aligned_cols=111 Identities=18% Similarity=0.251 Sum_probs=73.6
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHH---CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHH----HHHHHHHH
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSS---VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL----TAIDHVID 664 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~---~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~----~~i~~l~~ 664 (826)
.++|+++.|.|+. ...|...+..|.+ ..|.|+++.+.|......... ...+.....++|.+ +.++.++.
T Consensus 2 ~~li~~IPGNPGl--v~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~--~~~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGL--VEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSK--FSPNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCCh--HHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccccc--ccCCCCccCHHHHHHHHHHHHHHHhh
Confidence 5789999999876 4466666666653 479999999999543222100 00112222344433 33444443
Q ss_pred cCCCCCCcEEEEEecchHHHHHHHHHhCC---CceeEEEecCCcc
Q 003363 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLC 706 (826)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~ 706 (826)
.......++.|+|||.|+|+++.++.+.+ ..++.+++..|..
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 32114578999999999999999999988 6788888888854
No 248
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.32 E-value=1.8e-06 Score=86.56 Aligned_cols=130 Identities=16% Similarity=0.206 Sum_probs=90.3
Q ss_pred ccCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCC
Q 003363 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (826)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~ 648 (826)
...||.++...++.-.....+...-+||+.-|..+--.. ..+..-++.||.|+..|.+|-.| +-. ..+.
T Consensus 220 ks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYEv----G~m~tP~~lgYsvLGwNhPGFag---STG----~P~p 288 (517)
T KOG1553|consen 220 KSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYEV----GVMNTPAQLGYSVLGWNHPGFAG---STG----LPYP 288 (517)
T ss_pred eecCCcchhheeecCCCCCCCCCceEEEEecCCccceEe----eeecChHHhCceeeccCCCCccc---cCC----CCCc
Confidence 344666787777754422344456678888874322101 12223357899999999998443 321 1233
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhh
Q 003363 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (826)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 710 (826)
.++...+.+++++.++.-....+.|.|+|+|.||+-++++|..+|| ++++|+-+.+-|+..
T Consensus 289 ~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllp 349 (517)
T KOG1553|consen 289 VNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLP 349 (517)
T ss_pred ccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhh
Confidence 4567777888999999766778899999999999999999999997 799998887766543
No 249
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=7.6e-05 Score=84.15 Aligned_cols=174 Identities=16% Similarity=0.139 Sum_probs=111.2
Q ss_pred cCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 271 RQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
.+..+.++....++.. .| ..-.+....++++-+|+. +++.+. +..|-+++..
T Consensus 74 ~~~tv~~y~fps~~~~~iL--~Rftlp~r~~~v~g~g~~----iaagsd---------------D~~vK~~~~~------ 126 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGEEDTIL--ARFTLPIRDLAVSGSGKM----IAAGSD---------------DTAVKLLNLD------ 126 (933)
T ss_pred ccceEEEeeCCCCCcccee--eeeeccceEEEEecCCcE----EEeecC---------------ceeEEEEecc------
Confidence 4567777777777665 33 334567788999999999 999882 2367777763
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeee
Q 003363 350 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (826)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 429 (826)
+.+..+.+..+.+.+....|+|.|+.||..+-+ ..|++||++.+.......+ +.+
T Consensus 127 ----------D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d-----------G~v~iw~~~~~~~~~tl~~---v~k- 181 (933)
T KOG1274|consen 127 ----------DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD-----------GKVQIWDLQDGILSKTLTG---VDK- 181 (933)
T ss_pred ----------ccchheeecccCCceeeeeEcCCCCEEEEEecC-----------ceEEEEEcccchhhhhccc---CCc-
Confidence 556677788888899999999999999877755 4589999887654321111 111
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe-cCCC--CCeeeEEEeecCCEEEEEE
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAE--SNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~l-t~~~--~~~~~~~~s~dg~~l~~~~ 506 (826)
+..|. -......++|+|+|.++++... ++...+| +.++.+..-- .... ..+....|+|.|.+|++..
T Consensus 182 -----~n~~~--~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy--~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 182 -----DNEFI--LSRICTRLAWHPKGGTLAVPPV-DNTVKVY--SRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred -----ccccc--ccceeeeeeecCCCCeEEeecc-CCeEEEE--ccCCceeheeecccccccceEEEEEcCCCcEEeeec
Confidence 11110 0112357899999877776643 3333444 4445544322 2211 1366778899888776553
No 250
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.29 E-value=9.4e-05 Score=89.64 Aligned_cols=209 Identities=13% Similarity=0.130 Sum_probs=114.9
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceee-cCCCCeEEEEeecC
Q 003363 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISW-NSDETLIAYVAEEP 229 (826)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~w-SPDg~~ia~~~~~~ 229 (826)
..+...+|+| ||..|+..+..+ .+.+|+ .+......... ..+ ..+.| +++|+.|+..+.+
T Consensus 576 ~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~~~----~~v------~~v~~~~~~g~~latgs~d- 639 (793)
T PLN00181 576 KRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGVSIGTIKTK----ANI------CCVQFPSESGRSLAFGSAD- 639 (793)
T ss_pred CCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCcEEEEEecC----CCe------EEEEEeCCCCCEEEEEeCC-
Confidence 4588899997 788887765432 567773 23322222211 122 57788 4678888876432
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce--EeccCCCCCCccceEEEeeCCC
Q 003363 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~--~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
..|++||+.+++. ..+ ......+..+.|+ |+.
T Consensus 640 -------------------------------------------g~I~iwD~~~~~~~~~~~--~~h~~~V~~v~f~-~~~ 673 (793)
T PLN00181 640 -------------------------------------------HKVYYYDLRNPKLPLCTM--IGHSKTVSYVRFV-DSS 673 (793)
T ss_pred -------------------------------------------CeEEEEECCCCCccceEe--cCCCCCEEEEEEe-CCC
Confidence 5799999876542 233 2333456788897 677
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
. |+..+ .+..|.++|+.... ..........+..+........|+|+|++|+
T Consensus 674 ~----lvs~s---------------~D~~ikiWd~~~~~----------~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 674 T----LVSSS---------------TDNTLKLWDLSMSI----------SGINETPLHSFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred E----EEEEE---------------CCCEEEEEeCCCCc----------cccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence 6 76655 22357777763100 0001223455666655566788999999888
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCCCC-cccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCC
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (826)
..+.+ ..+++|+........ ......+...-..... ....+..++|++||..|+ ++...+
T Consensus 725 sgs~D-----------~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~-------~~~~V~~v~ws~~~~~lv-a~~~dG 785 (793)
T PLN00181 725 TGSET-----------NEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD-------ASQFISSVCWRGQSSTLV-AANSTG 785 (793)
T ss_pred EEeCC-----------CEEEEEECCCCCceEEEecccCCcccccccCC-------CCcEEEEEEEcCCCCeEE-EecCCC
Confidence 77654 357888765432110 0000000000000000 011245788999998654 444556
Q ss_pred eEEEEE
Q 003363 467 SQVIIS 472 (826)
Q Consensus 467 ~~~l~~ 472 (826)
...+|.
T Consensus 786 ~I~i~~ 791 (793)
T PLN00181 786 NIKILE 791 (793)
T ss_pred cEEEEe
Confidence 555553
No 251
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=0.00012 Score=72.91 Aligned_cols=101 Identities=16% Similarity=0.219 Sum_probs=61.1
Q ss_pred CCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeC-
Q 003363 333 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW- 411 (826)
Q Consensus 333 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~- 411 (826)
..+.|.++++ .+.....+..........+.||||++|+...-. .++.+|..
T Consensus 207 ~dt~i~lw~l-----------------kGq~L~~idtnq~~n~~aavSP~GRFia~~gFT-----------pDVkVwE~~ 258 (420)
T KOG2096|consen 207 LDTKICLWDL-----------------KGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT-----------PDVKVWEPI 258 (420)
T ss_pred CCCcEEEEec-----------------CCceeeeeccccccccceeeCCCCcEEEEecCC-----------CCceEEEEE
Confidence 3447889998 544445555555567788999999988754432 23444442
Q ss_pred -CCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 412 -PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 412 -~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
..++.. .++..++.. .| +...+..++||+|++++ ++.+.+|..+||-.|+
T Consensus 259 f~kdG~f------qev~rvf~L------kG-H~saV~~~aFsn~S~r~-vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 259 FTKDGTF------QEVKRVFSL------KG-HQSAVLAAAFSNSSTRA-VTVSKDGKWRIWDTDV 309 (420)
T ss_pred eccCcch------hhhhhhhee------cc-chhheeeeeeCCCccee-EEEecCCcEEEeeccc
Confidence 222221 112222211 11 33356678999999877 5667788888988775
No 252
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.28 E-value=1.5e-05 Score=83.45 Aligned_cols=214 Identities=17% Similarity=0.203 Sum_probs=122.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC---CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchH
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~ 652 (826)
+..+.|.|.. ....++|+ +.+|-.-...+ ...-.....+|.++|..|++++.++-. .+.. ..++..+..
T Consensus 93 ~~liqy~p~~-e~v~~~Pl-LiVpP~iNk~yi~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd-~~~~-----~~~~edYi~ 164 (445)
T COG3243 93 LELIQYKPLT-EKVLKRPL-LIVPPWINKFYILDLSPEKSLVRWLLEQGLDVFVISWRNPD-ASLA-----AKNLEDYIL 164 (445)
T ss_pred hhhhccCCCC-CccCCCce-EeeccccCceeEEeCCCCccHHHHHHHcCCceEEEeccCch-Hhhh-----hccHHHHHH
Confidence 3445565652 12245564 44554222211 112234788999999999999988622 1111 122333334
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCc-eeEEEecCCccchhhhc-------------------
Q 003363 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPLCNLALMV------------------- 712 (826)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~-~~a~v~~~p~~~~~~~~------------------- 712 (826)
+++..+++.+++.. ..++|-++|+|.||.++..+++.++.+ ++.++......|+....
T Consensus 165 e~l~~aid~v~~it--g~~~InliGyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF~~~g~l~if~n~~~~~~~~~~i~ 242 (445)
T COG3243 165 EGLSEAIDTVKDIT--GQKDINLIGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDFSHAGDLGIFANEATIEALDADIV 242 (445)
T ss_pred HHHHHHHHHHHHHh--CccccceeeEecchHHHHHHHHhhhhcccccceeeecchhhccccccccccCHHHHHHHHhhhh
Confidence 67778888888763 347899999999999999998888876 88777665555442110
Q ss_pred cCCCCCCchhhhhccCc---------CCccCC--CCCC-------------------hhhHHHHhhcCcc----------
Q 003363 713 GTTDIPDWCYVESYGSK---------GKDSFT--ESPS-------------------VEDLTRFHSKSPI---------- 752 (826)
Q Consensus 713 ~~~~~~~~~~~~~~~~~---------~~~~~~--~~~~-------------------~~~~~~~~~~sp~---------- 752 (826)
....++.|.....+... ....+. ..|. .+....++..+++
T Consensus 243 ~~g~lpg~~ma~~F~mLrpndliw~~fV~nyl~ge~pl~fdllyWn~dst~~~~~~~~~~Lrn~y~~N~l~~g~~~v~G~ 322 (445)
T COG3243 243 QKGILPGWYMAIVFFLLRPNDLIWNYFVNNYLDGEQPLPFDLLYWNADSTRLPGAAHSEYLRNFYLENRLIRGGLEVSGT 322 (445)
T ss_pred hccCCChHHHHHHHHhcCccccchHHHHHHhcCCCCCCchhHHHhhCCCccCchHHHHHHHHHHHHhChhhccceEECCE
Confidence 11122222211110000 000000 0000 1112222222222
Q ss_pred -cccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 003363 753 -SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 803 (826)
Q Consensus 753 -~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 803 (826)
-.+.+|+||++++.|+.|.++|........+.+.. +++++.. +.||-
T Consensus 323 ~VdL~~It~pvy~~a~~~DhI~P~~Sv~~g~~l~~g---~~~f~l~-~sGHI 370 (445)
T COG3243 323 MVDLGDITCPVYNLAAEEDHIAPWSSVYLGARLLGG---EVTFVLS-RSGHI 370 (445)
T ss_pred EechhhcccceEEEeecccccCCHHHHHHHHHhcCC---ceEEEEe-cCceE
Confidence 24678999999999999999999888777766654 5777776 56884
No 253
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.25 E-value=0.00095 Score=68.32 Aligned_cols=185 Identities=15% Similarity=0.109 Sum_probs=111.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCC---CccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~---~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
....+|||||++|+...+.-+....++-+|+ ....+++-+.+. +. ..+.|.|||+.|+.. +....
T Consensus 53 yGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGP----------Hel~l~pDG~tLvVA-NGGI~ 121 (305)
T PF07433_consen 53 YGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGP----------HELLLMPDGETLVVA-NGGIE 121 (305)
T ss_pred ecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcCh----------hhEEEcCCCCEEEEE-cCCCc
Confidence 4468999999998766555445667888884 335555554432 33 378899999888764 32211
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE-ecc--CCCCCCccceEEEeeCCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVK--GIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~--~~~~~~~~~~~~wSPDg~~ 308 (826)
..|... . .+......+++|..+|..+|++. +.. ......++.++++.+||.
T Consensus 122 Thpd~G-------R------------------~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~- 175 (305)
T PF07433_consen 122 THPDSG-------R------------------AKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT- 175 (305)
T ss_pred cCcccC-------c------------------eecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-
Confidence 111000 0 01222335689999999999854 321 112345889999999998
Q ss_pred CccEEEEEe-ecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec-------CCCCccccCceec
Q 003363 309 LHQYLVFVG-WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPRFS 380 (826)
Q Consensus 309 ~~~~lvf~~-~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-------t~~~~~~~~p~~S 380 (826)
++|.. ++.++. ....-|...+. ++..+.+ ..-.+++.+++++
T Consensus 176 ----V~~a~Q~qg~~~--------~~~PLva~~~~------------------g~~~~~~~~p~~~~~~l~~Y~gSIa~~ 225 (305)
T PF07433_consen 176 ----VAFAMQYQGDPG--------DAPPLVALHRR------------------GGALRLLPAPEEQWRRLNGYIGSIAAD 225 (305)
T ss_pred ----EEEEEecCCCCC--------ccCCeEEEEcC------------------CCcceeccCChHHHHhhCCceEEEEEe
Confidence 66654 333221 11122334432 1212222 1224678899999
Q ss_pred CCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 381 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 381 pDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
+||..++..+.+. +.+.+||..++...
T Consensus 226 ~~g~~ia~tsPrG----------g~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 226 RDGRLIAVTSPRG----------GRVAVWDAATGRLL 252 (305)
T ss_pred CCCCEEEEECCCC----------CEEEEEECCCCCEe
Confidence 9999998888764 45778888887653
No 254
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.23 E-value=5.6e-05 Score=72.30 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC--C------CceeEEEecCCccchhhhccCCCCCCchhhhhc
Q 003363 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--P------DKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (826)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~--p------~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 726 (826)
+....+++.+++..| +|+|+|.|+.++..+++.. . -.|+-+|+.+|..-...
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~---------------- 151 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK---------------- 151 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc----------------
Confidence 455566777787776 8999999999999998721 1 13677787777542100
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 806 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~ 806 (826)
+. . -..+...+++|.|-+.|+.|.++|...+..+++...+. .++.-.+||.+..
T Consensus 152 -----------~~----~------~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a-----~vl~HpggH~VP~ 205 (230)
T KOG2551|consen 152 -----------KL----D------ESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA-----TVLEHPGGHIVPN 205 (230)
T ss_pred -----------hh----h------hhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC-----eEEecCCCccCCC
Confidence 00 0 01234568899999999999999999999999999874 4444456897754
Q ss_pred CCCHHHHHHHHHHHHHHHc
Q 003363 807 PQSDFESFLNIGLWFKKYC 825 (826)
Q Consensus 807 ~~~~~~~~~~i~~w~~~~l 825 (826)
.. ...+.|.+||...+
T Consensus 206 ~~---~~~~~i~~fi~~~~ 221 (230)
T KOG2551|consen 206 KA---KYKEKIADFIQSFL 221 (230)
T ss_pred ch---HHHHHHHHHHHHHH
Confidence 33 56778888887653
No 255
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=9.2e-05 Score=83.53 Aligned_cols=154 Identities=15% Similarity=0.190 Sum_probs=100.1
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
....+++-||+++|+.++.. .+-++. .+...++.+. +..+.| ..+.++|.|+.||.++-+
T Consensus 99 ~r~~~v~g~g~~iaagsdD~----~vK~~~~~D~s~~~~lr---gh~apV------l~l~~~p~~~fLAvss~d------ 159 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDT----AVKLLNLDDSSQEKVLR---GHDAPV------LQLSYDPKGNFLAVSSCD------ 159 (933)
T ss_pred ceEEEEecCCcEEEeecCce----eEEEEeccccchheeec---ccCCce------eeeeEcCCCCEEEEEecC------
Confidence 67789999999999976543 344444 3333333332 333333 899999999999987543
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEe-ccCCCCC------CccceEEEeeCCC
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKS------LSVGQVVWAPLNE 307 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-l~~~~~~------~~~~~~~wSPDg~ 307 (826)
+.+++||++++.+.. ++++... -.+..++|+|+|.
T Consensus 160 --------------------------------------G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g 201 (933)
T KOG1274|consen 160 --------------------------------------GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG 201 (933)
T ss_pred --------------------------------------ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC
Confidence 578999998886543 2223322 2456899999988
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecCCC-Cc-cccCceecCCCC
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-IS-SAFFPRFSPDGK 384 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~-~~-~~~~p~~SpDG~ 384 (826)
. +++..-+ ..+..++. .+.+. ..|... .. ......|||.|+
T Consensus 202 ~----la~~~~d---------------~~Vkvy~r-----------------~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 202 T----LAVPPVD---------------NTVKVYSR-----------------KGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred e----EEeeccC---------------CeEEEEcc-----------------CCceeheeecccccccceEEEEEcCCCc
Confidence 8 8887632 24555554 33332 223222 11 256789999999
Q ss_pred EEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 385 ~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
|||-...+ ++|.+||+++
T Consensus 246 YiAAs~~~-----------g~I~vWnv~t 263 (933)
T KOG1274|consen 246 YIAASTLD-----------GQILVWNVDT 263 (933)
T ss_pred EEeeeccC-----------CcEEEEeccc
Confidence 99866654 4699999987
No 256
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.22 E-value=6.2e-05 Score=81.52 Aligned_cols=196 Identities=15% Similarity=0.200 Sum_probs=106.8
Q ss_pred eEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCC
Q 003363 167 KLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 245 (826)
Q Consensus 167 ~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~ 245 (826)
.|+++.+++ ..++..|+ ...+....+......| ..+.+||||++++.. .+
T Consensus 6 ~l~~V~~~~--~~~v~viD~~t~~~~~~i~~~~~~h---------~~~~~s~Dgr~~yv~-~r----------------- 56 (369)
T PF02239_consen 6 NLFYVVERG--SGSVAVIDGATNKVVARIPTGGAPH---------AGLKFSPDGRYLYVA-NR----------------- 56 (369)
T ss_dssp GEEEEEEGG--GTEEEEEETTT-SEEEEEE-STTEE---------EEEE-TT-SSEEEEE-ET-----------------
T ss_pred cEEEEEecC--CCEEEEEECCCCeEEEEEcCCCCce---------eEEEecCCCCEEEEE-cC-----------------
Confidence 345554442 23566777 4445555555443433 467899999986654 32
Q ss_pred CCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceee
Q 003363 246 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 325 (826)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~ 325 (826)
...|-++|+.++++..- +.......++++||||++ ++...+
T Consensus 57 --------------------------dg~vsviD~~~~~~v~~--i~~G~~~~~i~~s~DG~~----~~v~n~------- 97 (369)
T PF02239_consen 57 --------------------------DGTVSVIDLATGKVVAT--IKVGGNPRGIAVSPDGKY----VYVANY------- 97 (369)
T ss_dssp --------------------------TSEEEEEETTSSSEEEE--EE-SSEEEEEEE--TTTE----EEEEEE-------
T ss_pred --------------------------CCeEEEEECCcccEEEE--EecCCCcceEEEcCCCCE----EEEEec-------
Confidence 25799999999886543 344456678999999996 644432
Q ss_pred eeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecCCC-------CccccCceecCCCCEEEEEeccCCCCC
Q 003363 326 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDS 397 (826)
Q Consensus 326 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~-------~~~~~~p~~SpDG~~l~f~s~~~~~~~ 397 (826)
.+..+..+|. ++.+. +.+... ........-||+...+++.-.+
T Consensus 98 -------~~~~v~v~D~-----------------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----- 148 (369)
T PF02239_consen 98 -------EPGTVSVIDA-----------------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD----- 148 (369)
T ss_dssp -------ETTEEEEEET-----------------TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----
T ss_pred -------CCCceeEecc-----------------ccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----
Confidence 2237888887 44443 233221 1122344567888876666544
Q ss_pred CCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC
Q 003363 398 GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 477 (826)
Q Consensus 398 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~t 477 (826)
..++|++|........ +..+. -+.| +....|+|||++++...... ..+-.+|..+
T Consensus 149 -----~~~I~vVdy~d~~~~~--------~~~i~---~g~~-------~~D~~~dpdgry~~va~~~s--n~i~viD~~~ 203 (369)
T PF02239_consen 149 -----TGEIWVVDYSDPKNLK--------VTTIK---VGRF-------PHDGGFDPDGRYFLVAANGS--NKIAVIDTKT 203 (369)
T ss_dssp -----TTEEEEEETTTSSCEE--------EEEEE-----TT-------EEEEEE-TTSSEEEEEEGGG--TEEEEEETTT
T ss_pred -----CCeEEEEEeccccccc--------eeeec---cccc-------ccccccCcccceeeeccccc--ceeEEEeecc
Confidence 3679999976542211 01110 0111 22457999999887654333 3777889888
Q ss_pred CcEEEec
Q 003363 478 GELLRIT 484 (826)
Q Consensus 478 g~~~~lt 484 (826)
++...+.
T Consensus 204 ~k~v~~i 210 (369)
T PF02239_consen 204 GKLVALI 210 (369)
T ss_dssp TEEEEEE
T ss_pred ceEEEEe
Confidence 8776654
No 257
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.00028 Score=70.45 Aligned_cols=237 Identities=12% Similarity=0.124 Sum_probs=125.6
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
.++||..++-+ ++.| .+.+++. ..+.....+.... .++....|--....+.+.++.++..-+++.
T Consensus 22 fs~~G~~lits-s~dD--------sl~LYd~-~~g~~~~ti~skk-----yG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 22 FSDDGLLLITS-SEDD--------SLRLYDS-LSGKQVKTINSKK-----YGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ecCCCCEEEEe-cCCC--------eEEEEEc-CCCceeeEeeccc-----ccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 47888877553 3322 4556654 2333333333333 345666665555566666653333223333
Q ss_pred EecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCC
Q 003363 184 LWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 263 (826)
Q Consensus 184 i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 263 (826)
+.+ .+-.|.+. +.+..| ..++-||-+...+..+.+++.+ .|+....+..-.. ...-..-.+|+|.
T Consensus 87 l~d-NkylRYF~---GH~~~V------~sL~~sP~~d~FlS~S~D~tvr--LWDlR~~~cqg~l--~~~~~pi~AfDp~- 151 (311)
T KOG1446|consen 87 LHD-NKYLRYFP---GHKKRV------NSLSVSPKDDTFLSSSLDKTVR--LWDLRVKKCQGLL--NLSGRPIAAFDPE- 151 (311)
T ss_pred eec-CceEEEcC---CCCceE------EEEEecCCCCeEEecccCCeEE--eeEecCCCCceEE--ecCCCcceeECCC-
Confidence 333 33333332 333333 7889999998888888777665 3432211110000 0011112235544
Q ss_pred CccC-CCccCceEEEEEccC---CceEecc-CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 264 GETY-AGKRQPSLFVININS---GEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 264 g~~~-~~~~~~~l~v~d~~~---g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
|-.+ .+.+...|.++|+.. |-.+... +.+.......+.||||||. |+... ..+.+|
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~----iLlsT---------------~~s~~~ 212 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS----ILLST---------------NASFIY 212 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE----EEEEe---------------CCCcEE
Confidence 2222 122233677777643 2222221 1123445668999999998 88776 345799
Q ss_pred EEEcccccchhhhhhhhcCCCCCCcce-ecCCC---CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 339 AVRVSLYKSEASELELKESSSEDLPVV-NLTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~~---~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
.+|. -.|... .++.. .....+..|+|||++|+-.+.+ .+|++|++.++
T Consensus 213 ~lDA-----------------f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d-----------g~i~vw~~~tg 264 (311)
T KOG1446|consen 213 LLDA-----------------FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD-----------GTIHVWNLETG 264 (311)
T ss_pred EEEc-----------------cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCC-----------CcEEEEEcCCC
Confidence 9997 444432 22222 1123578899999987644433 46999999887
Q ss_pred CCC
Q 003363 415 GNF 417 (826)
Q Consensus 415 ~~~ 417 (826)
.+.
T Consensus 265 ~~v 267 (311)
T KOG1446|consen 265 KKV 267 (311)
T ss_pred cEe
Confidence 764
No 258
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.20 E-value=1.7e-05 Score=88.54 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=66.2
Q ss_pred ccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCC-CccCCCccCceEEEEEccCCceEec
Q 003363 210 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW-GETYAGKRQPSLFVININSGEVQAV 288 (826)
Q Consensus 210 ~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-g~~~~~~~~~~l~v~d~~~g~~~~l 288 (826)
+..++||-++ .|+..+.+++.+. |.... +.-.....|..++.-+.|.|-- ..-+.|.-+..+-+|++...++...
T Consensus 372 ILDlSWSKn~-fLLSSSMDKTVRL--Wh~~~-~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W 447 (712)
T KOG0283|consen 372 ILDLSWSKNN-FLLSSSMDKTVRL--WHPGR-KECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW 447 (712)
T ss_pred heecccccCC-eeEeccccccEEe--ecCCC-cceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee
Confidence 3678999877 6888888887764 33221 1112223467777777777743 2234555578899999988888776
Q ss_pred cCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003363 289 KGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 289 ~~~~~~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
..-...+..++|+|||+. .+..+
T Consensus 448 --~Dl~~lITAvcy~PdGk~----avIGt 470 (712)
T KOG0283|consen 448 --NDLRDLITAVCYSPDGKG----AVIGT 470 (712)
T ss_pred --hhhhhhheeEEeccCCce----EEEEE
Confidence 444557889999999997 66555
No 259
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=0.00017 Score=71.76 Aligned_cols=247 Identities=15% Similarity=0.139 Sum_probs=140.1
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (826)
|+-|..+|. +.....+.+++..+-+ -++-|+..- ..+....||+||++|+..+... ...+
T Consensus 32 s~~G~~lAv---------Gc~nG~vvI~D~~T~~-iar~lsaH~-----~pi~sl~WS~dgr~LltsS~D~-----si~l 91 (405)
T KOG1273|consen 32 SRWGDYLAV---------GCANGRVVIYDFDTFR-IARMLSAHV-----RPITSLCWSRDGRKLLTSSRDW-----SIKL 91 (405)
T ss_pred ccCcceeee---------eccCCcEEEEEccccc-hhhhhhccc-----cceeEEEecCCCCEeeeecCCc-----eeEE
Confidence 566666554 3344556666664432 223333332 3488999999999999876654 4556
Q ss_pred e--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecC
Q 003363 185 W--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (826)
Q Consensus 185 ~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (826)
| ..|...+.+.++..+ .+..|.|-.+..+.+.--.
T Consensus 92 wDl~~gs~l~rirf~spv----------~~~q~hp~k~n~~va~~~~--------------------------------- 128 (405)
T KOG1273|consen 92 WDLLKGSPLKRIRFDSPV----------WGAQWHPRKRNKCVATIME--------------------------------- 128 (405)
T ss_pred EeccCCCceeEEEccCcc----------ceeeeccccCCeEEEEEec---------------------------------
Confidence 6 345566666666655 6788999766665553321
Q ss_pred CCccCCCccCceEEEEEccCCceEecc-CCCCC--CccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 263 WGETYAGKRQPSLFVININSGEVQAVK-GIPKS--LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~--~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
..-+++++..++-+.|. ..+++ .......|.+-|+. |+... ..+.|..
T Consensus 129 ----------~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~y----IitGt---------------sKGkllv 179 (405)
T KOG1273|consen 129 ----------ESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKY----IITGT---------------SKGKLLV 179 (405)
T ss_pred ----------CCcEEEEecCCceeeccCCCccccccccccccccCCCCE----EEEec---------------CcceEEE
Confidence 12344555545555552 11111 12333468888885 65433 2236777
Q ss_pred EEcccccchhhhhhhhcCCCCCCcce---ecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC---C
Q 003363 340 VRVSLYKSEASELELKESSSEDLPVV---NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP---T 413 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~---~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~---~ 413 (826)
+|. .+-++. +++. ...+....+|-.|+.|++...++ -|..++.. .
T Consensus 180 ~~a-----------------~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDR-----------vIR~ye~~di~~ 230 (405)
T KOG1273|consen 180 YDA-----------------ETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDR-----------VIRTYEISDIDD 230 (405)
T ss_pred Eec-----------------chheeeeeeeech-heeeeEEEEeccCcEEEEecCCc-----------eEEEEehhhhcc
Confidence 776 343322 2332 23567789999999999888764 24444432 1
Q ss_pred ---CCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003363 414 ---NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (826)
Q Consensus 414 ---~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~ 488 (826)
++.........+++. .- .-...+||.||.+++.++ ...-.||.+....|.+.++..+..
T Consensus 231 ~~r~~e~e~~~K~qDvVN---k~-----------~Wk~ccfs~dgeYv~a~s--~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 231 EGRDGEVEPEHKLQDVVN---KL-----------QWKKCCFSGDGEYVCAGS--ARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred cCccCCcChhHHHHHHHh---hh-----------hhhheeecCCccEEEecc--ccceeEEEEecCCcceeeeecCCc
Confidence 111110011111111 10 112567899998776654 445578999988999888876544
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=0.00028 Score=75.69 Aligned_cols=240 Identities=15% Similarity=0.178 Sum_probs=132.7
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCC--CeEEEEecCCCCC
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSG--SKLLVVRNPENES 178 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG--~~la~~~~~~~~~ 178 (826)
.|++|+|-...+... ...+..+++.........|.. .++...++||.+ -.||+-.-..+|.
T Consensus 130 ~~qfs~dEsl~arlv----------~nev~f~~~~~f~~~~~kl~~-------~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 130 VPQFSIDESLAARLV----------SNEVQFYDLGSFKTIQHKLSV-------SGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred ccccccchhhhhhhh----------cceEEEEecCCccceeeeeec-------cceeeEEecCCCCCceEEEEccCCCCC
Confidence 566677766555432 234455554332222333332 346677777764 4565544444577
Q ss_pred CeEEEEec-C--CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCC
Q 003363 179 PIQFELWS-Q--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (826)
Q Consensus 179 ~~~~~i~~-~--~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (826)
+....|+. . +....+-.-+.-..++ -...|.+-|+-|+.++....+.. ..+|.
T Consensus 193 Pa~vri~~~~~~~~~~~~a~ksFFkadk-------vqm~WN~~gt~LLvLastdVDkt----------------n~SYY- 248 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPVANKSFFKADK-------VQMKWNKLGTALLVLASTDVDKT----------------NASYY- 248 (566)
T ss_pred CcEEEEeccccccccchhhhccccccce-------eEEEeccCCceEEEEEEEeecCC----------------Ccccc-
Confidence 77777772 2 2111111111111112 26789999999888765442210 01111
Q ss_pred cceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCC
Q 003363 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (826)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~ 335 (826)
+...||.++++ |+-..+. ......+.++.|+|+|+. .+.+-- --+.
T Consensus 249 ---------------GEq~Lyll~t~-g~s~~V~-L~k~GPVhdv~W~~s~~E----F~VvyG-------------fMPA 294 (566)
T KOG2315|consen 249 ---------------GEQTLYLLATQ-GESVSVP-LLKEGPVHDVTWSPSGRE----FAVVYG-------------FMPA 294 (566)
T ss_pred ---------------ccceEEEEEec-CceEEEe-cCCCCCceEEEECCCCCE----EEEEEe-------------cccc
Confidence 33789999998 4433332 455667889999999998 544320 0223
Q ss_pred ceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
.+-++|+ ....+-.+.++ .-....|||-|+.|++..-. +-..++-+||...-+
T Consensus 295 kvtifnl-----------------r~~~v~df~eg--pRN~~~fnp~g~ii~lAGFG--------NL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 295 KVTIFNL-----------------RGKPVFDFPEG--PRNTAFFNPHGNIILLAGFG--------NLPGDMEVWDVPNRK 347 (566)
T ss_pred eEEEEcC-----------------CCCEeEeCCCC--CccceEECCCCCEEEEeecC--------CCCCceEEEeccchh
Confidence 4556665 33333333333 33457899999998877643 234678889987733
Q ss_pred CCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEE
Q 003363 416 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (826)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (826)
. +..-. +.+..-+.|+|||++++.++.
T Consensus 348 ~--i~~~~-------------------a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 348 L--IAKFK-------------------AANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred h--ccccc-------------------cCCceEEEEcCCCcEEEEEec
Confidence 2 11110 001234579999998876554
No 261
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.18 E-value=5.6e-05 Score=72.59 Aligned_cols=176 Identities=15% Similarity=0.214 Sum_probs=117.4
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--c
Q 003363 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--S 186 (826)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~ 186 (826)
+.++|+.+...+..+...+.+.+++++....++..+...+ +++..+-|.-..+.|+...+.+ ..++| .
T Consensus 104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght-----g~Ir~v~wc~eD~~iLSSadd~-----tVRLWD~r 173 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT-----GGIRTVLWCHEDKCILSSADDK-----TVRLWDHR 173 (334)
T ss_pred eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC-----CcceeEEEeccCceEEeeccCC-----ceEEEEec
Confidence 5677877777788888888888888877766666655555 6789999988888887653332 46677 4
Q ss_pred CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCcc
Q 003363 187 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 266 (826)
Q Consensus 187 ~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 266 (826)
.+...+.+.....+ .++..|+||+.|... ..
T Consensus 174 Tgt~v~sL~~~s~V----------tSlEvs~dG~ilTia-~g-------------------------------------- 204 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPV----------TSLEVSQDGRILTIA-YG-------------------------------------- 204 (334)
T ss_pred cCcEEEEEecCCCC----------cceeeccCCCEEEEe-cC--------------------------------------
Confidence 56666666666666 789999999865442 21
Q ss_pred CCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccccc
Q 003363 267 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (826)
Q Consensus 267 ~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (826)
..|..||..+=.+ |+...-...+.+.+.+|+-. ++..+ +....+|.+|.
T Consensus 205 ------ssV~Fwdaksf~~--lKs~k~P~nV~SASL~P~k~-----~fVaG--------------ged~~~~kfDy---- 253 (334)
T KOG0278|consen 205 ------SSVKFWDAKSFGL--LKSYKMPCNVESASLHPKKE-----FFVAG--------------GEDFKVYKFDY---- 253 (334)
T ss_pred ------ceeEEeccccccc--eeeccCccccccccccCCCc-----eEEec--------------CcceEEEEEec----
Confidence 3456677665332 21122234566788999875 43333 23346888888
Q ss_pred chhhhhhhhcCCCCCCcceec--CCCCccccCceecCCCCEEE
Q 003363 347 SEASELELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~L--t~~~~~~~~p~~SpDG~~l~ 387 (826)
.+|+..-. ..+.+.+...+|||||..-+
T Consensus 254 -------------~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 254 -------------NTGEEIGSYNKGHFGPVHCVRFSPDGELYA 283 (334)
T ss_pred -------------cCCceeeecccCCCCceEEEEECCCCceee
Confidence 66665444 45677789999999998433
No 262
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=98.18 E-value=2.5e-06 Score=98.80 Aligned_cols=127 Identities=23% Similarity=0.264 Sum_probs=85.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cc--hHHHHHHHHCCcEEEEECCCCC-CCCchhhhhcCCCCCCcch
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY--SKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQD 651 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~--~~~~~~la~~G~~Vl~~d~rG~-~g~G~~~~~~~~~~~~~~~ 651 (826)
+...+|.|......+ .|++|++|||....... .+ ......+..+..+|+.++||.. -|+........++++ .
T Consensus 97 LylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~---g 172 (545)
T KOG1516|consen 97 LYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNL---G 172 (545)
T ss_pred ceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcc---c
Confidence 566788887532222 99999999988654432 22 2233345566899999999953 233222212223443 4
Q ss_pred HHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCcc
Q 003363 652 VNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 706 (826)
Q Consensus 652 ~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~ 706 (826)
+.|+..|++|+.++ ..-|+++|.|+|||.||..+..+... ...+|+.+|..++..
T Consensus 173 l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 173 LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 77999999999885 33799999999999999998776552 124788888777753
No 263
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=0.00082 Score=70.32 Aligned_cols=188 Identities=18% Similarity=0.126 Sum_probs=98.3
Q ss_pred EEEEEccCCce-EeccCCCC---CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 275 LFVININSGEV-QAVKGIPK---SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 275 l~v~d~~~g~~-~~l~~~~~---~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
+++++++.+.. +.+..... .....+....|||+ |+|..-.... .+... ......||++|.
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-----~wfgt~~~~~--~~~~~-~~~~G~lyr~~p-------- 150 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-----IWFGDMGYFD--LGKSE-ERPTGSLYRVDP-------- 150 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-----EEEeCCCccc--cCccc-cCCcceEEEEcC--------
Confidence 45555555554 44321111 12455778899988 8887533100 01100 012236999996
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC-CCCCCcccceeeeeee
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPV 429 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~ 429 (826)
.++..+.+..+........|||||+.|++..... ..||+++++. +.. +... ...
T Consensus 151 ---------~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~----------~~i~r~~~d~~~g~--~~~~----~~~ 205 (307)
T COG3386 151 ---------DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA----------NRIHRYDLDPATGP--IGGR----RGF 205 (307)
T ss_pred ---------CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC----------CeEEEEecCcccCc--cCCc----ceE
Confidence 5555666666566778899999999888777553 6799998874 111 1000 111
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEE-eecCCEEEEEEeC
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLL-TLDGDNIIAVSSS 508 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~-s~dg~~l~~~~s~ 508 (826)
+.+.. .+| ..-.++...||. |+..+. .+...|-+++.++..+..+.......+...| .++.+.|++++..
T Consensus 206 ~~~~~---~~G----~PDG~~vDadG~-lw~~a~-~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 206 VDFDE---EPG----LPDGMAVDADGN-LWVAAV-WGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEccC---CCC----CCCceEEeCCCC-EEEecc-cCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 11111 111 222445556665 444333 2334666677775555555544332333333 3345666666655
Q ss_pred CCCC
Q 003363 509 PVDV 512 (826)
Q Consensus 509 ~~~p 512 (826)
...+
T Consensus 277 ~~~~ 280 (307)
T COG3386 277 SGMS 280 (307)
T ss_pred CCCC
Confidence 5443
No 264
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.13 E-value=5.4e-06 Score=67.60 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=45.5
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCC
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF 635 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~ 635 (826)
|.+|....+.|++ . +..+|+++||.... ...|...++.|+++||.|+++|+||.+.+
T Consensus 1 G~~L~~~~w~p~~---~-~k~~v~i~HG~~eh--~~ry~~~a~~L~~~G~~V~~~D~rGhG~S 57 (79)
T PF12146_consen 1 GTKLFYRRWKPEN---P-PKAVVVIVHGFGEH--SGRYAHLAEFLAEQGYAVFAYDHRGHGRS 57 (79)
T ss_pred CcEEEEEEecCCC---C-CCEEEEEeCCcHHH--HHHHHHHHHHHHhCCCEEEEECCCcCCCC
Confidence 4567888888873 2 78999999996543 34688899999999999999999995443
No 265
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.08 E-value=0.00044 Score=73.29 Aligned_cols=208 Identities=16% Similarity=0.190 Sum_probs=110.1
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecCCCC-C
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS-K 233 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~-~ 233 (826)
+...+|||-|++|++.-... +++|.+...-+++... ..+ ..+.|||.|++|..-+..+... .
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~------V~~~~g~~~~~l~~~~~~~V----------~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAG------VECWGGPSKAKLVRFRHPDV----------KYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred hhheeecCcchheehhhccc------eEEccccchhheeeeecCCc----------eecccCcccceeeeeccCCccChh
Confidence 77889999999998754433 6788544333554432 233 6788999999998876655410 0
Q ss_pred ----CCcc--------CCCCCCCCCCcc----CCCC-CCcceeecCCCccCCCccCceEEEEEccCCceEecc-CCCCCC
Q 003363 234 ----PTFS--------LGSTKGGSSDKD----CNSW-KGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSL 295 (826)
Q Consensus 234 ----~~~~--------~~~~~~~~~~~~----~~~~-~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~ 295 (826)
+.+. ...+........ ...| .-++...+..+..+ -...|++.++ |+...... ..-...
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv---v~~sl~i~e~-t~n~~~~p~~~lr~~ 174 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV---VGSSLYIHEI-TDNIEEHPFKNLRPV 174 (561)
T ss_pred hccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh---ccCeEEEEec-CCccccCchhhcccc
Confidence 1111 000100011110 1123 11222232222222 2367888887 66554431 011124
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 375 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~ 375 (826)
++..+.|||-|.. ..|+|-..+ + .+.++.+.++.++ .+......+--.....
T Consensus 175 gi~dFsisP~~n~--~~la~~tPE----k------~~kpa~~~i~sIp----------------~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 175 GILDFSISPEGNH--DELAYWTPE----K------LNKPAMVRILSIP----------------KNSVLVTKNLFKVSGV 226 (561)
T ss_pred ceeeEEecCCCCC--ceEEEEccc----c------CCCCcEEEEEEcc----------------CCCeeeeeeeEeeccc
Confidence 6778999997654 115665422 2 2345566666663 1222222222223345
Q ss_pred CceecCCCCEEEEEeccCCCCCC-CCcccceEEEEeCC
Q 003363 376 FPRFSPDGKFLVFLSAKSSVDSG-AHSATDSLHRIDWP 412 (826)
Q Consensus 376 ~p~~SpDG~~l~f~s~~~~~~~g-~~~~~~~l~~~d~~ 412 (826)
...|.+.|++|.++..+.. .++ .-.+...||++++.
T Consensus 227 qLkW~~~g~~ll~l~~t~~-ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHT-KSNKSYFGESNLYLLRIT 263 (561)
T ss_pred EEEEecCCceEEEEEEEee-ecccceeccceEEEEeec
Confidence 6889999999998876653 111 11234678988876
No 266
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=5.2e-05 Score=78.34 Aligned_cols=208 Identities=16% Similarity=0.126 Sum_probs=116.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
....+++++||..|+....+ ..+++|+ ... ..+.+. ...|+.| .++.|||||+.|++++.
T Consensus 146 ~~k~vaf~~~gs~latgg~d-----g~lRv~~~Ps~-~t~l~e-~~~~~eV------~DL~FS~dgk~lasig~------ 206 (398)
T KOG0771|consen 146 QQKVVAFNGDGSKLATGGTD-----GTLRVWEWPSM-LTILEE-IAHHAEV------KDLDFSPDGKFLASIGA------ 206 (398)
T ss_pred cceEEEEcCCCCEeeecccc-----ceEEEEecCcc-hhhhhh-HhhcCcc------ccceeCCCCcEEEEecC------
Confidence 45788999999999986443 3677774 221 111111 2334455 89999999999999843
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
....||+.++|... ..++...+.......|+-|+.+ ...
T Consensus 207 ---------------------------------------d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~-~~l 246 (398)
T KOG0771|consen 207 ---------------------------------------DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQ-ETL 246 (398)
T ss_pred ---------------------------------------CceEEEEeccCchhhhcCCcccchhhhhceecccCCC-ceE
Confidence 36788998888433 3322333445556678888743 111
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
.++....... . + +.+++..++-+ .-...++.......+.+...|+||++++..+++
T Consensus 247 ~laa~~~~~~-~--v-----~~~~~~~w~~~----------------~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 247 RLAASQFPGG-G--V-----RLCDISLWSGS----------------NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred EEEEecCCCC-c--e-----eEEEeeeeccc----------------cccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 3333211111 1 1 11123333210 223444555555568889999999999988875
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (826)
. ++-+++..+=+.. .++.. .+...+..+.|+||.+.+.- .+.+....+..
T Consensus 303 G-----------sVai~~~~~lq~~----------~~vk~--------aH~~~VT~ltF~Pdsr~~~s-vSs~~~~~v~~ 352 (398)
T KOG0771|consen 303 G-----------SVAIYDAKSLQRL----------QYVKE--------AHLGFVTGLTFSPDSRYLAS-VSSDNEAAVTK 352 (398)
T ss_pred C-----------cEEEEEeceeeee----------Eeehh--------hheeeeeeEEEcCCcCcccc-cccCCceeEEE
Confidence 3 3556654332211 11111 11223457789999886643 33344556666
Q ss_pred EEC
Q 003363 473 VNV 475 (826)
Q Consensus 473 vdl 475 (826)
+..
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 554
No 267
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.07 E-value=7.2e-05 Score=80.58 Aligned_cols=140 Identities=13% Similarity=0.180 Sum_probs=84.3
Q ss_pred CceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 272 QPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
+..|-+||+.+++.+ .+ ......+.+++|||||+. |+-++ .+..|+++..
T Consensus 699 d~Ti~lWDl~~~~~~~~l--~gHtdqIf~~AWSpdGr~----~AtVc---------------KDg~~rVy~P-------- 749 (1012)
T KOG1445|consen 699 DSTIELWDLANAKLYSRL--VGHTDQIFGIAWSPDGRR----IATVC---------------KDGTLRVYEP-------- 749 (1012)
T ss_pred cceeeeeehhhhhhhhee--ccCcCceeEEEECCCCcc----eeeee---------------cCceEEEeCC--------
Confidence 467999999988755 33 334446788999999999 99887 3346777775
Q ss_pred hhhhhcCCCCCCcceecCCCC----ccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeee
Q 003363 351 ELELKESSSEDLPVVNLTESI----SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~----~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 426 (826)
..+ .+.+.++. .......|-=||+.|+....+. ....+|-+||.++=....+....-++
T Consensus 750 ---------rs~-e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk-------~SeRQv~~Y~Aq~l~~~pl~t~~lDv 812 (1012)
T KOG1445|consen 750 ---------RSR-EQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK-------SSERQVQMYDAQTLDLRPLYTQVLDV 812 (1012)
T ss_pred ---------CCC-CCccccCCCCccCcceeEEEEecCcEEEEecccc-------cchhhhhhhhhhhccCCcceeeeecc
Confidence 222 22232222 2345678999999998877665 23456777876653332222222222
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
.+ +..-+.+.+|...|+++. .|+..++.+.+
T Consensus 813 ap----------------s~LvP~YD~Ds~~lfltG--KGD~~v~~yEv 843 (1012)
T KOG1445|consen 813 AP----------------SPLVPHYDYDSNVLFLTG--KGDRFVNMYEV 843 (1012)
T ss_pred cC----------------ccccccccCCCceEEEec--CCCceEEEEEe
Confidence 22 222344667888666653 34555555554
No 268
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.07 E-value=0.00024 Score=76.32 Aligned_cols=105 Identities=17% Similarity=0.294 Sum_probs=63.4
Q ss_pred CCCCcEEEEEcCCCCCCCCccch--HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHc-
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM- 665 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~--~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~- 665 (826)
..++|.||.=.=.+|+.+...|. ..+-.....|..|..+-+.-.+ ...+.++|+..+....+++
T Consensus 66 ~~krP~vViDPRAGHGpGIGGFK~dSevG~AL~~GHPvYFV~F~p~P-------------~pgQTl~DV~~ae~~Fv~~V 132 (581)
T PF11339_consen 66 PTKRPFVVIDPRAGHGPGIGGFKPDSEVGVALRAGHPVYFVGFFPEP-------------EPGQTLEDVMRAEAAFVEEV 132 (581)
T ss_pred CCCCCeEEeCCCCCCCCCccCCCcccHHHHHHHcCCCeEEEEecCCC-------------CCCCcHHHHHHHHHHHHHHH
Confidence 45678777653222222222332 2334444668888777655322 2233577776654433332
Q ss_pred --CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEe-cCCcc
Q 003363 666 --GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA-RNPLC 706 (826)
Q Consensus 666 --~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~-~~p~~ 706 (826)
-.-+..|..|+|-|.||++++++++.+|+++.-+|+ .+|+.
T Consensus 133 ~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPls 176 (581)
T PF11339_consen 133 AERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLS 176 (581)
T ss_pred HHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcc
Confidence 112334899999999999999999999998876554 44543
No 269
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.06 E-value=7.1e-05 Score=78.95 Aligned_cols=169 Identities=15% Similarity=0.126 Sum_probs=94.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec-C-CCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-P-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~-~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+......|.|+.+....... .++.-.+|.+.+.....+++-. + ++..-. .....|+|||+.||-...++
T Consensus 269 a~lt~g~whP~~k~~FlT~s-~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~------~tsC~~nrdg~~iAagc~DG-- 339 (641)
T KOG0772|consen 269 AELTCGCWHPDNKEEFLTCS-YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP------VTSCAWNRDGKLIAAGCLDG-- 339 (641)
T ss_pred eeeeccccccCcccceEEec-CCCcEEEEecCCchhheeEEeeccCCCcccC------ceeeecCCCcchhhhcccCC--
Confidence 34667789999988754443 3365556655544444444432 1 111111 15678999999988765443
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec---c-CCCCCCccceEEEeeCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV---K-GIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l---~-~~~~~~~~~~~~wSPDg~ 307 (826)
.|-.|+..+-.++.. . .......+..++||+||+
T Consensus 340 ------------------------------------------SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 340 ------------------------------------------SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred ------------------------------------------ceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 344455322211111 0 122233567899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC---CccccCceecCCCC
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES---ISSAFFPRFSPDGK 384 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~---~~~~~~p~~SpDG~ 384 (826)
. |+..+ .+..|.++|+. +..++.....+ ........||||.+
T Consensus 378 ~----LlSRg---------------~D~tLKvWDLr----------------q~kkpL~~~tgL~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 378 Y----LLSRG---------------FDDTLKVWDLR----------------QFKKPLNVRTGLPTPFPGTDCCFSPDDK 422 (641)
T ss_pred h----hhhcc---------------CCCceeeeecc----------------ccccchhhhcCCCccCCCCccccCCCce
Confidence 9 87666 23367778873 22332222111 12345688999988
Q ss_pred EEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 385 ~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
.|+..+.-.+ | .....|+.+|..+
T Consensus 423 li~TGtS~~~---~--~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 423 LILTGTSAPN---G--MTAGTLFFFDRMT 446 (641)
T ss_pred EEEecccccC---C--CCCceEEEEeccc
Confidence 6665544332 1 2234688888655
No 270
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.06 E-value=0.00011 Score=74.48 Aligned_cols=209 Identities=13% Similarity=0.095 Sum_probs=115.1
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHH-HCCc----EEEEECCCCCCCCchhh--------hhcCCCCCC----cchHHHH
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLS-SVGY----SLLIVNYRGSLGFGEEA--------LQSLPGKVG----SQDVNDV 655 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la-~~G~----~Vl~~d~rG~~g~G~~~--------~~~~~~~~~----~~~~~D~ 655 (826)
-..||+||..++ ...+..++..+. +.|. .++.++.-|.-.+...+ .+-...+.. .....-+
T Consensus 12 tPTifihG~~gt--~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl 89 (255)
T PF06028_consen 12 TPTIFIHGYGGT--ANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWL 89 (255)
T ss_dssp EEEEEE--TTGG--CCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHH
T ss_pred CcEEEECCCCCC--hhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHH
Confidence 347889996655 557788888886 6664 24444444422111111 010111111 1124456
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC-----ceeEEEecCCccchhhhccCCCCCCchhhhhccCcC
Q 003363 656 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 730 (826)
Q Consensus 656 ~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (826)
..++.+|.++..+ +++-++||||||..++.++..+.. .+...|.+++.++-..... +.... ....
T Consensus 90 ~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~--~~~~~---~~~~--- 159 (255)
T PF06028_consen 90 KKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMN--DDQNQ---NDLN--- 159 (255)
T ss_dssp HHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCS--C-TTT---T-CS---
T ss_pred HHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcccccc--ccchh---hhhc---
Confidence 6778888887544 789999999999999998887532 4566666666554321100 00000 0000
Q ss_pred CccCCCCCC--hhhHHHHhhcCcccccCCCCCcEEEEEeC------CCCCCCcHHHHHHHHHHHhCCCCEEEEEeCC--C
Q 003363 731 KDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN--D 800 (826)
Q Consensus 731 ~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~PvLii~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~--~ 800 (826)
...|. ......+... ...--.-.+.+|-|.|. .|-.||...++.+...++......+-.++.| +
T Consensus 160 ----~~gp~~~~~~y~~l~~~--~~~~~p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a 233 (255)
T PF06028_consen 160 ----KNGPKSMTPMYQDLLKN--RRKNFPKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDA 233 (255)
T ss_dssp ----TT-BSS--HHHHHHHHT--HGGGSTTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGG
T ss_pred ----ccCCcccCHHHHHHHHH--HHhhCCCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCC
Confidence 00011 1122222111 00111124679999998 8999999999999888888777788888876 4
Q ss_pred CCCCCCCCCHHHHHHHHHHHH
Q 003363 801 VHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 801 ~H~~~~~~~~~~~~~~i~~w~ 821 (826)
.|.-.. ++. ++.+.|.+||
T Consensus 234 ~HS~Lh-eN~-~V~~~I~~FL 252 (255)
T PF06028_consen 234 QHSQLH-ENP-QVDKLIIQFL 252 (255)
T ss_dssp SCCGGG-CCH-HHHHHHHHHH
T ss_pred ccccCC-CCH-HHHHHHHHHh
Confidence 786543 443 6777787776
No 271
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.04 E-value=0.0016 Score=66.75 Aligned_cols=237 Identities=16% Similarity=0.168 Sum_probs=130.1
Q ss_pred ccEEEEeCC-CCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..-.++.+| ++.-++|.+..+ ...++++ .+++..+.+..+.+.|- ++--.|||||++|+ ++|....
T Consensus 6 RgH~~a~~p~~~~avafaRRPG---~~~~v~D~~~g~~~~~~~a~~gRHF-------yGHg~fs~dG~~Ly-tTEnd~~- 73 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPG---TFALVFDCRTGQLLQRLWAPPGRHF-------YGHGVFSPDGRLLY-TTENDYE- 73 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCC---cEEEEEEcCCCceeeEEcCCCCCEE-------ecCEEEcCCCCEEE-EeccccC-
Confidence 345678899 556666666543 2344444 55666655554444331 14567999999664 4444311
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.++..|-|+|... ..+++.. ....+..-++.|.|||+.
T Consensus 74 -------------------------------------~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~t--- 112 (305)
T PF07433_consen 74 -------------------------------------TGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGET--- 112 (305)
T ss_pred -------------------------------------CCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCE---
Confidence 1457899999883 3333321 233456668999999998
Q ss_pred EEEEEee--cC----cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-ee--cCC--CCccccCceec
Q 003363 312 YLVFVGW--SS----ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VN--LTE--SISSAFFPRFS 380 (826)
Q Consensus 312 ~lvf~~~--~~----~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~--Lt~--~~~~~~~p~~S 380 (826)
|+..-- .. +..++.+. . -...|.++|. .+|++ .+ |.. +.-+++..++.
T Consensus 113 -LvVANGGI~Thpd~GR~kLNl~--t-M~psL~~ld~-----------------~sG~ll~q~~Lp~~~~~lSiRHLa~~ 171 (305)
T PF07433_consen 113 -LVVANGGIETHPDSGRAKLNLD--T-MQPSLVYLDA-----------------RSGALLEQVELPPDLHQLSIRHLAVD 171 (305)
T ss_pred -EEEEcCCCccCcccCceecChh--h-cCCceEEEec-----------------CCCceeeeeecCccccccceeeEEec
Confidence 876421 11 11222221 1 1236777876 55653 33 533 44578899999
Q ss_pred CCCCEEEEEeccCCCCCCCCcccce-EEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEE
Q 003363 381 PDGKFLVFLSAKSSVDSGAHSATDS-LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (826)
Q Consensus 381 pDG~~l~f~s~~~~~~~g~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (826)
+||.- +|...-. |......- |.+. ..++...+.....+. ...+.+ | ..++++++||..+.
T Consensus 172 ~~G~V-~~a~Q~q----g~~~~~~PLva~~--~~g~~~~~~~~p~~~--------~~~l~~-Y---~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 172 GDGTV-AFAMQYQ----GDPGDAPPLVALH--RRGGALRLLPAPEEQ--------WRRLNG-Y---IGSIAADRDGRLIA 232 (305)
T ss_pred CCCcE-EEEEecC----CCCCccCCeEEEE--cCCCcceeccCChHH--------HHhhCC-c---eEEEEEeCCCCEEE
Confidence 99973 4443332 22122222 2223 232322111111000 011221 2 34778999999888
Q ss_pred EEEEeCCeEEEEEEECCCCcEEEecCC
Q 003363 460 LSSIWGSSQVIISVNVSSGELLRITPA 486 (826)
Q Consensus 460 ~~~~~~~~~~l~~vdl~tg~~~~lt~~ 486 (826)
+++-..+...+| |..+|++.....-
T Consensus 233 ~tsPrGg~~~~~--d~~tg~~~~~~~l 257 (305)
T PF07433_consen 233 VTSPRGGRVAVW--DAATGRLLGSVPL 257 (305)
T ss_pred EECCCCCEEEEE--ECCCCCEeecccc
Confidence 877666666666 8889988766543
No 272
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.03 E-value=3.7e-05 Score=78.96 Aligned_cols=269 Identities=12% Similarity=0.068 Sum_probs=146.1
Q ss_pred EEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcee
Q 003363 112 MFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLE 191 (826)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~ 191 (826)
.|..+...++.+.....|.+|.+.+...+... .+....+.+....+-++|+.++-.+++ +..++|.+.. .+
T Consensus 182 ~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~----tLaGs~g~it~~d~d~~~~~~iAas~d--~~~r~Wnvd~---~r 252 (459)
T KOG0288|consen 182 EFLRNSDTLATGGSDRIIKLWNVLGEKSELIS----TLAGSLGNITSIDFDSDNKHVIAASND--KNLRLWNVDS---LR 252 (459)
T ss_pred EEccCcchhhhcchhhhhhhhhcccchhhhhh----hhhccCCCcceeeecCCCceEEeecCC--Cceeeeeccc---hh
Confidence 34444445666666777777766444322221 111122568889999999988765443 3333444332 22
Q ss_pred EEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCC-CCCccCCCCC--CcceeecCCCccCC
Q 003363 192 KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG-SSDKDCNSWK--GQGDWEEDWGETYA 268 (826)
Q Consensus 192 ~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~d~g~~~~ 268 (826)
-.-.+ .++.++| ..+.|.-....++-.+.+.+.+.+.....+-... .....+.... ..-.++.+
T Consensus 253 ~~~TL-sGHtdkV------t~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH------ 319 (459)
T KOG0288|consen 253 LRHTL-SGHTDKV------TAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGH------ 319 (459)
T ss_pred hhhhh-cccccce------eeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecc------
Confidence 11112 1244444 6777777766666666555544322221110000 0000000000 11112211
Q ss_pred CccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 269 GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 269 ~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
....|-.||+.++..+.. .+....+.++..++||.. |...+ |+..|-++|+
T Consensus 320 --~DkkvRfwD~Rs~~~~~s--v~~gg~vtSl~ls~~g~~----lLsss---------------RDdtl~viDl------ 370 (459)
T KOG0288|consen 320 --FDKKVRFWDIRSADKTRS--VPLGGRVTSLDLSMDGLE----LLSSS---------------RDDTLKVIDL------ 370 (459)
T ss_pred --cccceEEEeccCCceeeE--eecCcceeeEeeccCCeE----Eeeec---------------CCCceeeeec------
Confidence 334588899888776665 466668889999999998 76655 4446778887
Q ss_pred hhhhhhhcCCCCCCcceecCCCC-----ccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccce
Q 003363 349 ASELELKESSSEDLPVVNLTESI-----SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 423 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt~~~-----~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 423 (826)
.+.+++...... .......|||||.+++-.+.+ ..||+|++.+++........
T Consensus 371 -----------Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d-----------gsv~iW~v~tgKlE~~l~~s 428 (459)
T KOG0288|consen 371 -----------RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD-----------GSVYIWSVFTGKLEKVLSLS 428 (459)
T ss_pred -----------ccccEEEEeeccccccccccceeEECCCCceeeeccCC-----------CcEEEEEccCceEEEEeccC
Confidence 555555443221 125678899999999877665 45999999887653211111
Q ss_pred eeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 424 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 424 ~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
... ..+..++|.|-|+.++- ++......||
T Consensus 429 ----------~s~-------~aI~s~~W~~sG~~Lls-adk~~~v~lW 458 (459)
T KOG0288|consen 429 ----------TSN-------AAITSLSWNPSGSGLLS-ADKQKAVTLW 458 (459)
T ss_pred ----------CCC-------cceEEEEEcCCCchhhc-ccCCcceEec
Confidence 100 02446789998887643 3333333343
No 273
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.01 E-value=0.00054 Score=63.28 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=91.8
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhc
Q 003363 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 726 (826)
+.....+|..+.++..+... ++.+.|++||.|+.++++++.+....++++++++|.---...
T Consensus 38 w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~--------------- 99 (181)
T COG3545 38 WEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE--------------- 99 (181)
T ss_pred CCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc---------------
Confidence 44445777777776655542 456999999999999999998766689999999885310000
Q ss_pred cCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCC
Q 003363 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 806 (826)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~ 806 (826)
........++|.. ..++--|.++++..+|+.|+++++..+.+++.. .++....+||....
T Consensus 100 --------------~~~~~~~tf~~~p-~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wgs-----~lv~~g~~GHiN~~ 159 (181)
T COG3545 100 --------------IRPKHLMTFDPIP-REPLPFPSVVVASRNDPYVSYEHAEDLANAWGS-----ALVDVGEGGHINAE 159 (181)
T ss_pred --------------cchhhccccCCCc-cccCCCceeEEEecCCCCCCHHHHHHHHHhccH-----hheecccccccchh
Confidence 0001111222221 123446899999999999999999999999875 67888889995432
Q ss_pred --CCCHHHHHHHHHHHHHH
Q 003363 807 --PQSDFESFLNIGLWFKK 823 (826)
Q Consensus 807 --~~~~~~~~~~i~~w~~~ 823 (826)
.....+.+..+.+++.+
T Consensus 160 sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 160 SGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred hcCCCcHHHHHHHHHHhhh
Confidence 23333445555555543
No 274
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.00 E-value=0.0096 Score=61.83 Aligned_cols=264 Identities=14% Similarity=0.156 Sum_probs=138.2
Q ss_pred cEEEEeCCCCCeEEEEec-----CCCCCCeEEEEecCCc--eeEEEecCCCccccccCCCcccceeecCCCCeEEEEeec
Q 003363 156 ASAVVPSPSGSKLLVVRN-----PENESPIQFELWSQSQ--LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~-----~~~~~~~~~~i~~~~~--~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~ 228 (826)
...+..||||+.++.... ..++...++++|+... ....+.++.++.--+ -........|.|||++++.--.
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~--~~~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV--VPYKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B--S--GGGEEE-TTSSEEEEEEES
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee--cccccceEEccCCcEEEEEccC
Confidence 556788999999976542 2235667899996554 455566665411100 0012567899999988775332
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003363 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
....+-|+|++.+++..-..+|+- . ..=|-|+.
T Consensus 116 ------------------------------------------Pa~SVtVVDl~~~kvv~ei~~PGC--~---~iyP~~~~ 148 (342)
T PF06433_consen 116 ------------------------------------------PATSVTVVDLAAKKVVGEIDTPGC--W---LIYPSGNR 148 (342)
T ss_dssp ------------------------------------------SSEEEEEEETTTTEEEEEEEGTSE--E---EEEEEETT
T ss_pred ------------------------------------------CCCeEEEEECCCCceeeeecCCCE--E---EEEecCCC
Confidence 237899999999987544113331 1 11133322
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-ee---cCCC--CccccCceecCC
Q 003363 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VN---LTES--ISSAFFPRFSPD 382 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~---Lt~~--~~~~~~p~~SpD 382 (826)
. +... | ++..+..+.++ +.|+. ++ +... ..-...|.++.+
T Consensus 149 ~---F~~l-------------C--~DGsl~~v~Ld----------------~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 149 G---FSML-------------C--GDGSLLTVTLD----------------ADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp E---EEEE-------------E--TTSCEEEEEET----------------STSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred c---eEEE-------------e--cCCceEEEEEC----------------CCCCEeEeeccccCCCCcccccccceECC
Confidence 0 2222 4 33466666664 22322 22 1111 112356778888
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeecc-C-CCCCcccccCCCCCCccccCCCEEEE
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA-E-GDCFPGLYSSSILSNPWLSDGCTMLL 460 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~-~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (826)
+.+++|.+-. ..||..|+.+++.... .-..+.... . ++-.|| +...+++.+...+||+
T Consensus 195 ~~~~~F~Sy~-----------G~v~~~dlsg~~~~~~-----~~~~~~t~~e~~~~WrPG----G~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 195 GGRLYFVSYE-----------GNVYSADLSGDSAKFG-----KPWSLLTDAEKADGWRPG----GWQLIAYHAASGRLYV 254 (342)
T ss_dssp TTEEEEEBTT-----------SEEEEEEETTSSEEEE-----EEEESS-HHHHHTTEEE-----SSS-EEEETTTTEEEE
T ss_pred CCeEEEEecC-----------CEEEEEeccCCccccc-----CcccccCccccccCcCCc----ceeeeeeccccCeEEE
Confidence 8889998865 3589999877553211 111111100 1 122333 2334567776777877
Q ss_pred EEEeC-------CeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 461 SSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 461 ~~~~~-------~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
....+ ....||.+|+++++...-.+-........++.|.+=+++..+..+ ..|++.|..+++
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~--~~l~v~D~~tGk 323 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGD--GTLDVYDAATGK 323 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTT--TEEEEEETTT--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCC--CeEEEEeCcCCc
Confidence 66532 456899999999875533332222223456777775665554322 347777765543
No 275
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.99 E-value=0.00015 Score=76.14 Aligned_cols=230 Identities=12% Similarity=0.077 Sum_probs=141.9
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~ 235 (826)
+-++.+|-.-++++.. +++...+|.|...+....+.+++--. -|..+.....+|||+.|+...+
T Consensus 422 VcAvtIS~~trhVyTg---GkgcVKVWdis~pg~k~PvsqLdcl~-----rdnyiRSckL~pdgrtLivGGe-------- 485 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTG---GKGCVKVWDISQPGNKSPVSQLDCLN-----RDNYIRSCKLLPDGRTLIVGGE-------- 485 (705)
T ss_pred EEEEEecCCcceeEec---CCCeEEEeeccCCCCCCccccccccC-----cccceeeeEecCCCceEEeccc--------
Confidence 5567777777766432 11222233333223322333322110 1223478889999999987533
Q ss_pred ccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeCCCCCccEEE
Q 003363 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
...|-+||++....+.-.. +.........+.|||.+ +.
T Consensus 486 ------------------------------------astlsiWDLAapTprikaeltssapaCyALa~spDak-----vc 524 (705)
T KOG0639|consen 486 ------------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-----VC 524 (705)
T ss_pred ------------------------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-----ee
Confidence 2568889998766543211 22223455678999999 88
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCC
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~ 394 (826)
|.+ |.+ ..|.++|+. +...++++..+...+.....|+||.+|....-
T Consensus 525 Fsc------------csd--GnI~vwDLh----------------nq~~VrqfqGhtDGascIdis~dGtklWTGGl--- 571 (705)
T KOG0639|consen 525 FSC------------CSD--GNIAVWDLH----------------NQTLVRQFQGHTDGASCIDISKDGTKLWTGGL--- 571 (705)
T ss_pred eee------------ccC--CcEEEEEcc----------------cceeeecccCCCCCceeEEecCCCceeecCCC---
Confidence 987 333 368888883 44557788888888889999999999853222
Q ss_pred CCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 395 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 395 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
.+.+..||+..+...+.. + |.+.+.++...|.+.+|.+... ..+++++.
T Consensus 572 --------DntvRcWDlregrqlqqh----------------d----F~SQIfSLg~cP~~dWlavGMe---ns~vevlh 620 (705)
T KOG0639|consen 572 --------DNTVRCWDLREGRQLQQH----------------D----FSSQIFSLGYCPTGDWLAVGME---NSNVEVLH 620 (705)
T ss_pred --------ccceeehhhhhhhhhhhh----------------h----hhhhheecccCCCccceeeecc---cCcEEEEe
Confidence 256889998875542211 1 1123456677899998877643 33456666
Q ss_pred CCCCcEEEecCCCCCeeeEEEeecCCEEEEEE
Q 003363 475 VSSGELLRITPAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 475 l~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
..+.+..+|.....-+-..-|+..|++++-+.
T Consensus 621 ~skp~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 621 TSKPEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred cCCccceeecccccEEEEEEecccCceeeecC
Confidence 65666667776666555567888898766554
No 276
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.99 E-value=0.0005 Score=70.51 Aligned_cols=176 Identities=18% Similarity=0.145 Sum_probs=98.0
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
..+++||||+.+|++.... ....|++....+ ..+.+
T Consensus 27 ~s~AvS~dg~~~A~v~~~~-----------------------------------------~~~~L~~~~~~~-~~~~~-- 62 (253)
T PF10647_consen 27 TSPAVSPDGSRVAAVSEGD-----------------------------------------GGRSLYVGPAGG-PVRPV-- 62 (253)
T ss_pred cceEECCCCCeEEEEEEcC-----------------------------------------CCCEEEEEcCCC-cceee--
Confidence 6899999999999997222 346788887654 44443
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
..+ .....++|+++|. +.++...... .....+... .......+...
T Consensus 63 ~~g-~~l~~PS~d~~g~-----~W~v~~~~~~-------------~~~~~~~~~---------------g~~~~~~v~~~ 108 (253)
T PF10647_consen 63 LTG-GSLTRPSWDPDGW-----VWTVDDGSGG-------------VRVVRDSAS---------------GTGEPVEVDWP 108 (253)
T ss_pred ccC-CccccccccCCCC-----EEEEEcCCCc-------------eEEEEecCC---------------CcceeEEeccc
Confidence 122 2667899999966 5555432111 111112100 12222223222
Q ss_pred -C-ccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC--CCC-CCCcccceeeeeeeeeccCCCCCcccccCC
Q 003363 371 -I-SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNG-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (826)
Q Consensus 371 -~-~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~--~~~-~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 445 (826)
. +.+...++||||++++++.... +..+|++.-+. .++ ...+.... .+.. . -...
T Consensus 109 ~~~~~I~~l~vSpDG~RvA~v~~~~--------~~~~v~va~V~r~~~g~~~~l~~~~-~~~~---~---------~~~~ 167 (253)
T PF10647_consen 109 GLRGRITALRVSPDGTRVAVVVEDG--------GGGRVYVAGVVRDGDGVPRRLTGPR-RVAP---P---------LLSD 167 (253)
T ss_pred ccCCceEEEEECCCCcEEEEEEecC--------CCCeEEEEEEEeCCCCCcceeccce-Eecc---c---------ccCc
Confidence 1 1678899999999999999775 23567766543 333 11221111 1110 0 0013
Q ss_pred CCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC
Q 003363 446 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 486 (826)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~ 486 (826)
+..+.|.+++..+++....+..... .+..+++..+.++..
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l~~~ 207 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPLPSV 207 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCCceeE-EEEccCCcccccCCC
Confidence 4478899999755554443333333 567778877777433
No 277
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.96 E-value=9e-05 Score=80.15 Aligned_cols=169 Identities=17% Similarity=0.198 Sum_probs=100.5
Q ss_pred CCcEEEEEcCCCCCCCCccch-HHHHHHHHCC--cEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH--c
Q 003363 591 CDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVG--YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID--M 665 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~-~~~~~la~~G--~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~--~ 665 (826)
..|+++++||++.......+. .+.+.|.-.| ..|..+|++-..| . ..-....+-...+.++.+. .
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~ig--G--------~nI~h~ae~~vSf~r~kvlei~ 244 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIG--G--------ANIKHAAEYSVSFDRYKVLEIT 244 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCC--C--------cchHHHHHHHHHHhhhhhhhhh
Confidence 458999999988322222222 3333443334 4456667663211 0 0001113344444443333 2
Q ss_pred CCCCCCcEEEEEecchHHHHHHHHHhCCCc-eeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHH
Q 003363 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 744 (826)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~-~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (826)
+......|.|+|.|+|+.++.+......|. +.++|++.=..+ ..+ +. .+.++
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~------~vd----------gp------rgirD----- 297 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLD------TVD----------GP------RGIRD----- 297 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEeccccc------CCC----------cc------cCCcc-----
Confidence 445667899999999987777766544443 455554421110 000 00 01111
Q ss_pred HHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCC
Q 003363 745 RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 807 (826)
Q Consensus 745 ~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~ 807 (826)
+.+-.++.|+|++.|.+|..+++...+++.++++. +++++++.+++|.+..+
T Consensus 298 --------E~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsmaip 349 (784)
T KOG3253|consen 298 --------EALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMAIP 349 (784)
T ss_pred --------hhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCccccCC
Confidence 12234679999999999999999999999999987 48999999999998643
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.95 E-value=0.019 Score=70.96 Aligned_cols=131 Identities=12% Similarity=0.090 Sum_probs=67.7
Q ss_pred ccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccce----eeeeeeeeccCCCCCcccccCCCCCC
Q 003363 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI----VDVIPVVQCAEGDCFPGLYSSSILSN 449 (826)
Q Consensus 374 ~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~f~g~~~~~~~~~ 449 (826)
.....++|||++|+..... ..+|+++|+.+++...+..+. ..+..+.. .++.-....-.....+
T Consensus 742 P~GIavspdG~~LYVADs~----------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~--~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSE----------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD--HDGVGSEVLLQHPLGV 809 (1057)
T ss_pred ccEEEEeCCCCEEEEEECC----------CCeEEEEECCCCcEEEEEecccccCcccccccC--CCCchhhhhccCCcee
Confidence 3457899999987655433 367999998876532211100 00000000 0000000000123467
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--------------CeeeEEEeecCCEEEEEEeCCCCCCeE
Q 003363 450 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--------------NFSWSLLTLDGDNIIAVSSSPVDVPQV 515 (826)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~--------------~~~~~~~s~dg~~l~~~~s~~~~p~~l 515 (826)
++++||+ ||++. .++..|..+|.+++.+..+..... ......++++|+ +++ +... -..|
T Consensus 810 avd~dG~-LYVAD--s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyV-aDt~--Nn~I 882 (1057)
T PLN02919 810 LCAKDGQ-IYVAD--SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFV-ADTN--NSLI 882 (1057)
T ss_pred eEeCCCc-EEEEE--CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEE-EECC--CCEE
Confidence 7899997 65543 345568888988888776643210 112235666675 433 3322 2257
Q ss_pred EEEeeccc
Q 003363 516 KYGYFVDK 523 (826)
Q Consensus 516 ~~~~~~~~ 523 (826)
.++++.++
T Consensus 883 rvid~~~~ 890 (1057)
T PLN02919 883 RYLDLNKG 890 (1057)
T ss_pred EEEECCCC
Confidence 77776554
No 279
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.93 E-value=7.6e-05 Score=79.01 Aligned_cols=135 Identities=12% Similarity=0.197 Sum_probs=83.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEE-ecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~-~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.++...|||||.-|+.+.++ .++.+| ..|-.+... +....+ .+++|.|+...|+|...
T Consensus 105 ~A~~~gRW~~dGtgLlt~GED-----G~iKiWSrsGMLRStl~Q~~~~v----------~c~~W~p~S~~vl~c~g---- 165 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAGED-----GVIKIWSRSGMLRSTVVQNEESI----------RCARWAPNSNSIVFCQG---- 165 (737)
T ss_pred hhhhhcccCCCCceeeeecCC-----ceEEEEeccchHHHHHhhcCcee----------EEEEECCCCCceEEecC----
Confidence 457788999999999876444 388999 445443221 222233 79999999999999632
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC-CceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
.++++-.+.- .++.+. ...+.-+-...|+|.+.-
T Consensus 166 -----------------------------------------~h~~IKpL~~n~k~i~W--kAHDGiiL~~~W~~~s~l-- 200 (737)
T KOG1524|consen 166 -----------------------------------------GHISIKPLAANSKIIRW--RAHDGLVLSLSWSTQSNI-- 200 (737)
T ss_pred -----------------------------------------CeEEEeecccccceeEE--eccCcEEEEeecCccccc--
Confidence 3555555542 233333 344445567889999886
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l 386 (826)
|+..+ .++..-++|. .+...-+-..+...+.+.+|.||-.++
T Consensus 201 --I~sgG---------------ED~kfKvWD~-----------------~G~~Lf~S~~~ey~ITSva~npd~~~~ 242 (737)
T KOG1524|consen 201 --IASGG---------------EDFRFKIWDA-----------------QGANLFTSAAEEYAITSVAFNPEKDYL 242 (737)
T ss_pred --eeecC---------------CceeEEeecc-----------------cCcccccCChhccceeeeeecccccee
Confidence 55544 2234456664 333333333446678899999994333
No 280
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=97.88 E-value=0.00086 Score=66.51 Aligned_cols=233 Identities=10% Similarity=0.024 Sum_probs=126.4
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (826)
.+|||..++ ++..+..|++|.+.+.-.+.-.+.... +.+....|.+||+.|+-...+. .+.
T Consensus 55 F~P~gs~~a---------SgG~Dr~I~LWnv~gdceN~~~lkgHs-----gAVM~l~~~~d~s~i~S~gtDk-----~v~ 115 (338)
T KOG0265|consen 55 FHPDGSCFA---------SGGSDRAIVLWNVYGDCENFWVLKGHS-----GAVMELHGMRDGSHILSCGTDK-----TVR 115 (338)
T ss_pred ECCCCCeEe---------ecCCcceEEEEeccccccceeeecccc-----ceeEeeeeccCCCEEEEecCCc-----eEE
Confidence 378887553 233456677777655555444444343 5689999999999998876544 456
Q ss_pred Eec--CCceeEEEecCCCccccccC--CCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 184 LWS--QSQLEKEFHVPQTVHGSVYA--DGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 184 i~~--~~~~~~~~~~~~~~~g~v~~--~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
.|+ .|+..+-.......-+.+.. -+.+.-.+=|+||+.=++-...+.. .+.. ..+--...+.|
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~------------~~t~-~~kyqltAv~f 182 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA------------IKTF-ENKYQLTAVGF 182 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch------------hhcc-ccceeEEEEEe
Confidence 663 33332222211111111110 0111233445555544443221110 0000 00011113445
Q ss_pred ecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 260 EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
..+..+...+.-+++|-+||+..++..-+. ....-.+..+.-||+|.. +.-.+ -++.+.+
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~l-sGh~DtIt~lsls~~gs~----llsns---------------Md~tvrv 242 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTL-SGHADTITGLSLSRYGSF----LLSNS---------------MDNTVRV 242 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEe-ecccCceeeEEeccCCCc----ccccc---------------ccceEEE
Confidence 555445556666789999999777766552 222336788999999998 76554 2235666
Q ss_pred EEcccccchhhhhhhhcCCCCCCcc-eecCCC-----CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 340 VRVSLYKSEASELELKESSSEDLPV-VNLTES-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~-----~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
+|...- ..++. ..+..+ ...-....|||+++++.+.+.+. .+|+||..+
T Consensus 243 wd~rp~--------------~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr-----------~vyvwd~~~ 297 (338)
T KOG0265|consen 243 WDVRPF--------------APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR-----------FVYVWDTTS 297 (338)
T ss_pred EEeccc--------------CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc-----------eEEEeeccc
Confidence 665211 22222 333332 12345679999999998888764 478887555
No 281
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=0.0016 Score=70.00 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=89.3
Q ss_pred eEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc-eecCCCCccccCc
Q 003363 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFP 377 (826)
Q Consensus 299 ~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p 377 (826)
++.|.+-|.. |...+..+- .+.+..| -....||.+++ ++... ..|. ..+.+...
T Consensus 222 qm~WN~~gt~----LLvLastdV-Dktn~SY--YGEq~Lyll~t-----------------~g~s~~V~L~-k~GPVhdv 276 (566)
T KOG2315|consen 222 QMKWNKLGTA----LLVLASTDV-DKTNASY--YGEQTLYLLAT-----------------QGESVSVPLL-KEGPVHDV 276 (566)
T ss_pred EEEeccCCce----EEEEEEEee-cCCCccc--cccceEEEEEe-----------------cCceEEEecC-CCCCceEE
Confidence 6789999998 766543222 2223332 35678999997 42222 2333 35678899
Q ss_pred eecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCE
Q 003363 378 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 457 (826)
Q Consensus 378 ~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~ 457 (826)
.|||+|+.++..- |+ .-..+-++|+...-...+..+. -..+-|+|.|+.
T Consensus 277 ~W~~s~~EF~Vvy-------Gf--MPAkvtifnlr~~~v~df~egp----------------------RN~~~fnp~g~i 325 (566)
T KOG2315|consen 277 TWSPSGREFAVVY-------GF--MPAKVTIFNLRGKPVFDFPEGP----------------------RNTAFFNPHGNI 325 (566)
T ss_pred EECCCCCEEEEEE-------ec--ccceEEEEcCCCCEeEeCCCCC----------------------ccceEECCCCCE
Confidence 9999999887555 21 2345666776653221111111 135669999998
Q ss_pred EEEEEEeC--CeEEEEEEECCCCcEEEecCCC-CCeeeEEEeecCCEEEEEEeCC
Q 003363 458 MLLSSIWG--SSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 458 l~~~~~~~--~~~~l~~vdl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~s~~ 509 (826)
|++..-.. |...+| |+.+ .+.|.... .+-....|+|||.+++....+|
T Consensus 326 i~lAGFGNL~G~mEvw--Dv~n--~K~i~~~~a~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVW--DVPN--RKLIAKFKAANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred EEEeecCCCCCceEEE--eccc--hhhccccccCCceEEEEcCCCcEEEEEeccc
Confidence 87765443 444555 5544 23333222 1235568999999988776554
No 282
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=97.86 E-value=0.0005 Score=65.08 Aligned_cols=180 Identities=18% Similarity=0.251 Sum_probs=105.2
Q ss_pred EEEEEcC-CCCCCCCccch-HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 594 LIVVLHG-GPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 594 ~vv~~HG-g~~~~~~~~~~-~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
++|++-| |++ ..+. ..+..|+++|+.|+.+|-+- | |. ......+...|+...+++..++. ..+
T Consensus 4 ~~v~~SGDgGw----~~~d~~~a~~l~~~G~~VvGvdsl~---Y---fw---~~rtP~~~a~Dl~~~i~~y~~~w--~~~ 68 (192)
T PF06057_consen 4 LAVFFSGDGGW----RDLDKQIAEALAKQGVPVVGVDSLR---Y---FW---SERTPEQTAADLARIIRHYRARW--GRK 68 (192)
T ss_pred EEEEEeCCCCc----hhhhHHHHHHHHHCCCeEEEechHH---H---Hh---hhCCHHHHHHHHHHHHHHHHHHh--CCc
Confidence 5666766 332 2333 46789999999999999432 1 10 11222334788888888888873 468
Q ss_pred cEEEEEecchHHHHHHHHHhCCC----ceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHh
Q 003363 672 KVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 747 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (826)
+|.|+|+|+|+-+.-.+..+.|. +++.+++++|-......+ ...+|. +. .... .
T Consensus 69 ~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFei---hv~~wl-----g~---------~~~~-----~ 126 (192)
T PF06057_consen 69 RVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTADFEI---HVSGWL-----GM---------GGDD-----A 126 (192)
T ss_pred eEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcceEEE---Ehhhhc-----CC---------CCCc-----c
Confidence 99999999999887777776664 677888887743211100 011111 11 0000 0
Q ss_pred hcCcccccCCCC-CcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 748 SKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 748 ~~sp~~~~~~i~-~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
...+...+.++. .|++.|+|++|.-. +...++. ..++.+..||+.| |.. +-....+.|++-++
T Consensus 127 ~~~~~pei~~l~~~~v~CiyG~~E~d~-------~cp~l~~--~~~~~i~lpGgHH-fd~--dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 127 AYPVIPEIAKLPPAPVQCIYGEDEDDS-------LCPSLRQ--PGVEVIALPGGHH-FDG--DYDALAKRILDALK 190 (192)
T ss_pred cCCchHHHHhCCCCeEEEEEcCCCCCC-------cCccccC--CCcEEEEcCCCcC-CCC--CHHHHHHHHHHHHh
Confidence 112333445554 58999999988642 1122333 3578889998655 432 22244555655544
No 283
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.85 E-value=0.00025 Score=68.27 Aligned_cols=195 Identities=11% Similarity=0.142 Sum_probs=116.3
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCce-eEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL-EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
+...+||-|.++|+.-. ...++++.+-.+. .+.... .+..|.| ..+-|-...+.|+..+++
T Consensus 103 vk~~af~~ds~~lltgg-----~ekllrvfdln~p~App~E~-~ghtg~I------r~v~wc~eD~~iLSSadd------ 164 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGG-----QEKLLRVFDLNRPKAPPKEI-SGHTGGI------RTVLWCHEDKCILSSADD------ 164 (334)
T ss_pred eeeEEecccchhhhccc-----hHHHhhhhhccCCCCCchhh-cCCCCcc------eeEEEeccCceEEeeccC------
Confidence 67788888888887632 2234555422211 111111 1223333 667777777777765443
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
..+.+||..+|+..+- ..-...+.++..|+||+. |
T Consensus 165 --------------------------------------~tVRLWD~rTgt~v~s--L~~~s~VtSlEvs~dG~i----l- 199 (334)
T KOG0278|consen 165 --------------------------------------KTVRLWDHRTGTEVQS--LEFNSPVTSLEVSQDGRI----L- 199 (334)
T ss_pred --------------------------------------CceEEEEeccCcEEEE--EecCCCCcceeeccCCCE----E-
Confidence 4578899999876654 344557788999999995 4
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCC
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~ 394 (826)
..+.. +.|-.+|+ .+-...+-..-...+.+...+|+-..++ ...
T Consensus 200 Tia~g---------------ssV~Fwda-----------------ksf~~lKs~k~P~nV~SASL~P~k~~fV--aGg-- 243 (334)
T KOG0278|consen 200 TIAYG---------------SSVKFWDA-----------------KSFGLLKSYKMPCNVESASLHPKKEFFV--AGG-- 243 (334)
T ss_pred EEecC---------------ceeEEecc-----------------ccccceeeccCccccccccccCCCceEE--ecC--
Confidence 44311 14555554 2222222222234567778889875433 311
Q ss_pred CCCCCCcccceEEEEeCCCCCCCCcc-cceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003363 395 VDSGAHSATDSLHRIDWPTNGNFSSL-EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (826)
Q Consensus 395 ~~~g~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~v 473 (826)
....+|.+|..||+.+... .+. | ..+--+.|+|||. +|.+.+.+|..+||..
T Consensus 244 -------ed~~~~kfDy~TgeEi~~~nkgh--------------~-----gpVhcVrFSPdGE-~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 244 -------EDFKVYKFDYNTGEEIGSYNKGH--------------F-----GPVHCVRFSPDGE-LYASGSEDGTIRLWQT 296 (334)
T ss_pred -------cceEEEEEeccCCceeeecccCC--------------C-----CceEEEEECCCCc-eeeccCCCceEEEEEe
Confidence 2256899999998764331 111 1 1234567999997 8888888899999988
Q ss_pred ECC
Q 003363 474 NVS 476 (826)
Q Consensus 474 dl~ 476 (826)
...
T Consensus 297 ~~~ 299 (334)
T KOG0278|consen 297 TPG 299 (334)
T ss_pred cCC
Confidence 753
No 284
>COG3150 Predicted esterase [General function prediction only]
Probab=97.84 E-value=0.00037 Score=63.28 Aligned_cols=143 Identities=17% Similarity=0.227 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccch-hhhccCCCCCCchhhhhccCcC
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-ALMVGTTDIPDWCYVESYGSKG 730 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~ 730 (826)
...+++-++.++++. .| ...+|+|-|.|||.+.+++.++. ++++ +.+|.+.. ..|.+..+.+.
T Consensus 42 p~~a~~ele~~i~~~-~~-~~p~ivGssLGGY~At~l~~~~G--irav-~~NPav~P~e~l~gylg~~e----------- 105 (191)
T COG3150 42 PQQALKELEKAVQEL-GD-ESPLIVGSSLGGYYATWLGFLCG--IRAV-VFNPAVRPYELLTGYLGRPE----------- 105 (191)
T ss_pred HHHHHHHHHHHHHHc-CC-CCceEEeecchHHHHHHHHHHhC--Chhh-hcCCCcCchhhhhhhcCCCC-----------
Confidence 455555555555553 22 34899999999999999998863 4444 44554432 22222221111
Q ss_pred CccCCCCCChhhHHHHhhcCcccccCCCCCc-EEEE-EeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCC
Q 003363 731 KDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFL-LGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 808 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-vLii-~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~ 808 (826)
..+.+....-+....... -...+..++.| .|.+ .-+.|++....++.+.+... ...+..|++|.|....
T Consensus 106 -n~ytg~~y~le~~hI~~l-~~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~-------~~~V~dgg~H~F~~f~ 176 (191)
T COG3150 106 -NPYTGQEYVLESRHIATL-CVLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPC-------YEIVWDGGDHKFKGFS 176 (191)
T ss_pred -CCCCcceEEeehhhHHHH-HHhhccccCCCcEEEeecccccHHHHHHHHHHHhhhh-------hheeecCCCccccchH
Confidence 011111110000111111 11233445544 4444 44459998877777766654 3557788999986443
Q ss_pred CHHHHHHHHHHHHH
Q 003363 809 SDFESFLNIGLWFK 822 (826)
Q Consensus 809 ~~~~~~~~i~~w~~ 822 (826)
..+++|..|..
T Consensus 177 ---~~l~~i~aF~g 187 (191)
T COG3150 177 ---RHLQRIKAFKG 187 (191)
T ss_pred ---HhHHHHHHHhc
Confidence 45677777753
No 285
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.84 E-value=0.00087 Score=74.23 Aligned_cols=236 Identities=15% Similarity=0.089 Sum_probs=129.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
.+....|-|-+++++..... |.-++|.+.... ....+ ....|. +..++.+||++..+..+.+.+.+-+
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~--Gel~vfdlaS~~-l~Eti---~AHdga------IWsi~~~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKN--GELQVFDLASAS-LVETI---RAHDGA------IWSISLSPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred cEEEEEecCCCceEEEeccC--CceEEEEeehhh-hhhhh---hccccc------eeeeeecCCCCceEEecCCcEEEEE
Confidence 46677788888777664432 444555554322 11111 122233 3899999999999998877754422
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
.|... .+.. | .+-.++.+...+.-.+ ...+-.+.+||||+. |+
T Consensus 482 df~l~-------------------~~~~-g--------t~~k~lsl~~~rtLel-----~ddvL~v~~Spdgk~----La 524 (888)
T KOG0306|consen 482 DFKLV-------------------VSVP-G--------TQKKVLSLKHTRTLEL-----EDDVLCVSVSPDGKL----LA 524 (888)
T ss_pred eEEEE-------------------eccC-c--------ccceeeeeccceEEec-----cccEEEEEEcCCCcE----EE
Confidence 22100 0000 0 0001122222222222 224557899999997 77
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCC
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~ 394 (826)
..- .+....+|.+|. -.-...|.++.-.+.+...|||++.|+..+.+.+
T Consensus 525 VsL-------------LdnTVkVyflDt------------------lKFflsLYGHkLPV~smDIS~DSklivTgSADKn 573 (888)
T KOG0306|consen 525 VSL-------------LDNTVKVYFLDT------------------LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN 573 (888)
T ss_pred EEe-------------ccCeEEEEEecc------------------eeeeeeecccccceeEEeccCCcCeEEeccCCCc
Confidence 654 234457888873 2334567777777888999999999988877653
Q ss_pred CCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 395 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 395 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
+.+|-++=|.-..-... ++.++..+.|.|+. +++|++..++ .+-.+|
T Consensus 574 -----------VKiWGLdFGDCHKS~fA-------------------HdDSvm~V~F~P~~-~~FFt~gKD~--kvKqWD 620 (888)
T KOG0306|consen 574 -----------VKIWGLDFGDCHKSFFA-------------------HDDSVMSVQFLPKT-HLFFTCGKDG--KVKQWD 620 (888)
T ss_pred -----------eEEeccccchhhhhhhc-------------------ccCceeEEEEcccc-eeEEEecCcc--eEEeec
Confidence 44454444332211111 22455677888965 5778765444 444555
Q ss_pred CCCC-cEEEecCCCCCeeeEEEeecCCEEE
Q 003363 475 VSSG-ELLRITPAESNFSWSLLTLDGDNII 503 (826)
Q Consensus 475 l~tg-~~~~lt~~~~~~~~~~~s~dg~~l~ 503 (826)
-+.= .++.|......+.-...+++|+.++
T Consensus 621 g~kFe~iq~L~~H~~ev~cLav~~~G~~vv 650 (888)
T KOG0306|consen 621 GEKFEEIQKLDGHHSEVWCLAVSPNGSFVV 650 (888)
T ss_pred hhhhhhheeeccchheeeeeEEcCCCCeEE
Confidence 3332 2333333333444456677777444
No 286
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.83 E-value=0.00058 Score=71.98 Aligned_cols=209 Identities=12% Similarity=0.116 Sum_probs=124.4
Q ss_pred eeEEEEEEeecCCCCc--cceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC----ceeEEEecCCC
Q 003363 126 KKFMLSTVISKENENS--VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS----QLEKEFHVPQT 199 (826)
Q Consensus 126 ~~~l~~~~i~~~~~~~--~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~ 199 (826)
+..+.+|+|...+... .+|. -+.. -+.+..-..+|||+.|+.- |....+.||+-. +....+.....
T Consensus 439 kgcVKVWdis~pg~k~PvsqLd--cl~r-dnyiRSckL~pdgrtLivG-----GeastlsiWDLAapTprikaeltssap 510 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLD--CLNR-DNYIRSCKLLPDGRTLIVG-----GEASTLSIWDLAAPTPRIKAELTSSAP 510 (705)
T ss_pred CCeEEEeeccCCCCCCcccccc--ccCc-ccceeeeEecCCCceEEec-----cccceeeeeeccCCCcchhhhcCCcch
Confidence 4456677775554321 1221 0000 1347788899999999874 323355667322 11112211111
Q ss_pred ccccccCCCcccceeecCCCCeEEEEe-ecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEE
Q 003363 200 VHGSVYADGWFEGISWNSDETLIAYVA-EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVI 278 (826)
Q Consensus 200 ~~g~v~~~~~~~~~~wSPDg~~ia~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~ 278 (826)
....++.|||.+ ++|.+ .++... .|+.........+..+..-..-.+.+.|+-..+++.-++.+.-|
T Consensus 511 ---------aCyALa~spDak-vcFsccsdGnI~--vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcW 578 (705)
T KOG0639|consen 511 ---------ACYALAISPDAK-VCFSCCSDGNIA--VWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCW 578 (705)
T ss_pred ---------hhhhhhcCCccc-eeeeeccCCcEE--EEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeeh
Confidence 115778999997 66665 444333 33332222233334444333344566666667777788899999
Q ss_pred EccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCC
Q 003363 279 NINSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 358 (826)
Q Consensus 279 d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 358 (826)
|+..+. ++....-...+.+...+|.|.+ |+..- .++++++...
T Consensus 579 Dlregr--qlqqhdF~SQIfSLg~cP~~dW----lavGM---------------ens~vevlh~---------------- 621 (705)
T KOG0639|consen 579 DLREGR--QLQQHDFSSQIFSLGYCPTGDW----LAVGM---------------ENSNVEVLHT---------------- 621 (705)
T ss_pred hhhhhh--hhhhhhhhhhheecccCCCccc----eeeec---------------ccCcEEEEec----------------
Confidence 997764 2311222335667789999999 87754 3346778776
Q ss_pred CCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 359 SEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 359 ~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
...+..+|..+...+.+..|++-||+++-+..+
T Consensus 622 -skp~kyqlhlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 622 -SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred -CCccceeecccccEEEEEEecccCceeeecCch
Confidence 555677888888889999999999987655544
No 287
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.83 E-value=0.00064 Score=75.14 Aligned_cols=155 Identities=14% Similarity=0.189 Sum_probs=101.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
........+||++.|++..+. ++..+| ..+...+..-. ...+.+ ...+++|-|..+|....+...
T Consensus 63 d~ita~~l~~d~~~L~~a~rs-----~llrv~~L~tgk~irswKa--~He~Pv------i~ma~~~~g~LlAtggaD~~v 129 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRS-----QLLRVWSLPTGKLIRSWKA--IHEAPV------ITMAFDPTGTLLATGGADGRV 129 (775)
T ss_pred hhhheeeecCCccEEEEeecc-----ceEEEEEcccchHhHhHhh--ccCCCe------EEEEEcCCCceEEeccccceE
Confidence 346788999999999887554 477888 34433332211 112222 677899999888777666544
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCc--cCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE--TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~--~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~ 309 (826)
+ .|+.........++++........|.|+|-. .+++..+..+++||+.++..-..+-......+.+..+++|+..
T Consensus 130 ~--VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~- 206 (775)
T KOG0319|consen 130 K--VWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE- 206 (775)
T ss_pred E--EEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce-
Confidence 4 4554444444556666666667778888743 3566678899999998765411111233446789999999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEc
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (826)
+++++ |+.-++++|+
T Consensus 207 ---~ls~~---------------RDkvi~vwd~ 221 (775)
T KOG0319|consen 207 ---LLSVG---------------RDKVIIVWDL 221 (775)
T ss_pred ---EEEec---------------cCcEEEEeeh
Confidence 98887 4446888887
No 288
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.81 E-value=0.00015 Score=77.03 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=104.3
Q ss_pred cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecC-CccchhhhccC--CCCC-Cchh-hhhccCcCCccCCCCCC
Q 003363 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVGT--TDIP-DWCY-VESYGSKGKDSFTESPS 739 (826)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~-p~~~~~~~~~~--~~~~-~~~~-~~~~~~~~~~~~~~~~~ 739 (826)
...++.++..|.|.|-=|..+..+++ ..++++|++.+. ++.++...... .... .|.+ ...|..++.......
T Consensus 166 ~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~t-- 242 (367)
T PF10142_consen 166 KFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDT-- 242 (367)
T ss_pred hcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCC--
Confidence 34577899999999999999988888 457888877442 33343211100 0001 1211 111222222222222
Q ss_pred hhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 003363 740 VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 819 (826)
Q Consensus 740 ~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~ 819 (826)
.+..+...-.+|+.+.++++.|-||+.|..|++..++.+.-++..|+. +..+.++|+++|.+.. .++.+.+..
T Consensus 243 p~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G---~K~lr~vPN~~H~~~~----~~~~~~l~~ 315 (367)
T PF10142_consen 243 PEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG---EKYLRYVPNAGHSLIG----SDVVQSLRA 315 (367)
T ss_pred HHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC---CeeEEeCCCCCcccch----HHHHHHHHH
Confidence 233445566899999999999999999999999999999999999986 5788999999999875 467788888
Q ss_pred HHHHHc
Q 003363 820 WFKKYC 825 (826)
Q Consensus 820 w~~~~l 825 (826)
|+...+
T Consensus 316 f~~~~~ 321 (367)
T PF10142_consen 316 FYNRIQ 321 (367)
T ss_pred HHHHHH
Confidence 987653
No 289
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.80 E-value=0.0015 Score=65.31 Aligned_cols=231 Identities=14% Similarity=0.169 Sum_probs=134.1
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--c--cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcc
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--S--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~--~--~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~ 650 (826)
.++..++-- +++++|+||-.|.-+..... . .....++.+.++ |.++-+|.+|...-. ..++..+.-.
T Consensus 33 ~v~V~V~Gd----~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gA----p~~p~~y~yP 103 (326)
T KOG2931|consen 33 VVHVTVYGD----PKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGA----PSFPEGYPYP 103 (326)
T ss_pred cEEEEEecC----CCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCC----ccCCCCCCCC
Confidence 366666642 23467889999984432211 1 112356667777 999999999854322 2334444444
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhh---------------ccCC
Q 003363 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------------VGTT 715 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~---------------~~~~ 715 (826)
.++++.+.+-.+++.. .-+.|.-+|--.|+++-+.+|..||+++-+.|++++....... .+.+
T Consensus 104 smd~LAd~l~~VL~~f--~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwiew~~~K~~s~~l~~~Gmt 181 (326)
T KOG2931|consen 104 SMDDLADMLPEVLDHF--GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWIEWAYNKVSSNLLYYYGMT 181 (326)
T ss_pred CHHHHHHHHHHHHHhc--CcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHHHHHHHHHHHHHHHhhchh
Confidence 5788888887777763 3467999999999999999999999999999999875432110 0111
Q ss_pred -CCCCchhhhhccCcCCc-----------cCCCCCChhhHHHH----hhcCccc-ccC----CCCCcEEEEEeCCCCCCC
Q 003363 716 -DIPDWCYVESYGSKGKD-----------SFTESPSVEDLTRF----HSKSPIS-HIS----KVKTPTIFLLGAQDLRVP 774 (826)
Q Consensus 716 -~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~sp~~-~~~----~i~~PvLii~G~~D~~vp 774 (826)
...+......++.+... .+...+...+...+ .....+. ... .++||+|++.|++-+.+
T Consensus 182 ~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~~tlkc~vllvvGd~Sp~~- 260 (326)
T KOG2931|consen 182 QGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLGTTLKCPVLLVVGDNSPHV- 260 (326)
T ss_pred hhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcCccccccEEEEecCCCchh-
Confidence 11111111222221111 11122222222222 1111211 111 45699999999998776
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 775 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 775 ~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
+.+.++..+|.. ....++.+.++|-.....+.. ...+.+.-|+
T Consensus 261 -~~vv~~n~~Ldp--~~ttllk~~d~g~l~~e~qP~-kl~ea~~~Fl 303 (326)
T KOG2931|consen 261 -SAVVECNSKLDP--TYTTLLKMADCGGLVQEEQPG-KLAEAFKYFL 303 (326)
T ss_pred -hhhhhhhcccCc--ccceEEEEcccCCcccccCch-HHHHHHHHHH
Confidence 666677666654 356777888887765543443 3444444444
No 290
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.80 E-value=0.0041 Score=60.84 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=91.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.+.....+-+.++++.-+. .+-..+|+ .|+..........+ ..+.||++|..+++..++.-
T Consensus 53 GavW~~Did~~s~~liTGSA-----D~t~kLWDv~tGk~la~~k~~~~V----------k~~~F~~~gn~~l~~tD~~m- 116 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSA-----DQTAKLWDVETGKQLATWKTNSPV----------KRVDFSFGGNLILASTDKQM- 116 (327)
T ss_pred ceEEEEEecCCcceeeeccc-----cceeEEEEcCCCcEEEEeecCCee----------EEEeeccCCcEEEEEehhhc-
Confidence 34566666667777765332 24566773 44444444444444 68899999999998876541
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc-------CCc-eEeccCCCCCCccceEEEe
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-------SGE-VQAVKGIPKSLSVGQVVWA 303 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-------~g~-~~~l~~~~~~~~~~~~~wS 303 (826)
| ....|.++|+. +.+ ...+ ...+..+..+.|+
T Consensus 117 --------------------------------g------~~~~v~~fdi~~~~~~~~s~ep~~kI--~t~~skit~a~Wg 156 (327)
T KOG0643|consen 117 --------------------------------G------YTCFVSVFDIRDDSSDIDSEEPYLKI--PTPDSKITSALWG 156 (327)
T ss_pred --------------------------------C------cceEEEEEEccCChhhhcccCceEEe--cCCccceeeeeec
Confidence 1 12456666665 333 3333 2223466788999
Q ss_pred eCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceec-CCCCccccCceecC
Q 003363 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL-TESISSAFFPRFSP 381 (826)
Q Consensus 304 PDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~L-t~~~~~~~~p~~Sp 381 (826)
|-|+. |+... ....|-.+|+ .+|+ ...- ..+...+...++||
T Consensus 157 ~l~~~----ii~Gh---------------e~G~is~~da-----------------~~g~~~v~s~~~h~~~Ind~q~s~ 200 (327)
T KOG0643|consen 157 PLGET----IIAGH---------------EDGSISIYDA-----------------RTGKELVDSDEEHSSKINDLQFSR 200 (327)
T ss_pred ccCCE----EEEec---------------CCCcEEEEEc-----------------ccCceeeechhhhccccccccccC
Confidence 99998 87765 3347888887 4442 2221 33455788999999
Q ss_pred CCCEEEEEeccC
Q 003363 382 DGKFLVFLSAKS 393 (826)
Q Consensus 382 DG~~l~f~s~~~ 393 (826)
|..+++-.+.+.
T Consensus 201 d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 201 DRTYFITGSKDT 212 (327)
T ss_pred CcceEEecccCc
Confidence 999887666553
No 291
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.79 E-value=0.00073 Score=68.60 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=108.0
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..+.++|-....+..|+ ....-.+..++|-|-+..+ |+... + .|+ =||..|... +.....
T Consensus 120 dvVriy~ksst~pt~Lk-s~sQrnvtclawRPlsase---lavgC-r-----~gI--------ciW~~s~tl--n~~r~~ 179 (445)
T KOG2139|consen 120 DVVRIYDKSSTCPTKLK-SVSQRNVTCLAWRPLSASE---LAVGC-R-----AGI--------CIWSDSRTL--NANRNI 179 (445)
T ss_pred cEEEEeccCCCCCceec-chhhcceeEEEeccCCcce---eeeee-c-----cee--------EEEEcCccc--cccccc
Confidence 34556666566666664 3334467789999988762 54443 1 111 133333210 000000
Q ss_pred hhhcCCCCCCcceecCCC--CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcc-cceeeeeee
Q 003363 353 ELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL-EKIVDVIPV 429 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~ 429 (826)
. ..+...-++..+ ...+.+.+|.+||..|+-.+-. ..+|.+||.+++....+. .+.
T Consensus 180 ~-----~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g----------sssi~iWdpdtg~~~pL~~~gl------ 238 (445)
T KOG2139|consen 180 R-----MMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG----------SSSIMIWDPDTGQKIPLIPKGL------ 238 (445)
T ss_pred c-----cccccchhheeCCCCceeeEEEEcCCCCEEeecccC----------cceEEEEcCCCCCcccccccCC------
Confidence 0 001112222222 2347889999999998866644 367999999998775543 111
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCC
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~ 509 (826)
.+...+.|||||..| |.+..++...||..+-.--+.+. ....+.+....|+|+|..|+|+.+..
T Consensus 239 --------------gg~slLkwSPdgd~l-faAt~davfrlw~e~q~wt~erw-~lgsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 239 --------------GGFSLLKWSPDGDVL-FAATCDAVFRLWQENQSWTKERW-ILGSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred --------------CceeeEEEcCCCCEE-EEecccceeeeehhcccceecce-eccCCceeeeeecCCCCEEEEEEcCC
Confidence 134467899999866 55566677777744322112222 22333456678999999999998764
Q ss_pred CCCCeEEEEeecc
Q 003363 510 VDVPQVKYGYFVD 522 (826)
Q Consensus 510 ~~p~~l~~~~~~~ 522 (826)
.. ||......
T Consensus 303 p~---lysl~f~~ 312 (445)
T KOG2139|consen 303 PR---LYSLTFDG 312 (445)
T ss_pred ce---EEEEeecC
Confidence 43 77665543
No 292
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.79 E-value=0.00057 Score=67.81 Aligned_cols=279 Identities=13% Similarity=0.084 Sum_probs=143.7
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCceeEEEecCC-Ccccc---ccC-CCcccceeecCCCCeEEEEe
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQ-TVHGS---VYA-DGWFEGISWNSDETLIAYVA 226 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~-~~~g~---v~~-~~~~~~~~wSPDg~~ia~~~ 226 (826)
.....+|||||..+|..+... +-.++.+. .....+....... ..|-- .|. -+.+..+.|.|-+..|+..+
T Consensus 114 ~cR~aafs~DG~lvATGsaD~--SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s 191 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADA--SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS 191 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcc--eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence 367889999999988754321 11222222 0111111111000 00000 111 12347899999999888888
Q ss_pred ecCCCCCCCccCCCCCC-CCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC---CCccceEEE
Q 003363 227 EEPSPSKPTFSLGSTKG-GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVW 302 (826)
Q Consensus 227 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~---~~~~~~~~w 302 (826)
.+.+.+.-.|.....+. -+...+. .-.....|.|.+.-.+++...+.+.++|+++-+.-.-. .|. ...+.++.+
T Consensus 192 rD~tvKlFDfsK~saKrA~K~~qd~-~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-nPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 192 RDNTVKLFDFSKTSAKRAFKVFQDT-EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-NPDDQHTGAITQVRY 269 (430)
T ss_pred CCCeEEEEecccHHHHHHHHHhhcc-ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-CcccccccceeEEEe
Confidence 87765432222111010 0111111 11223446666444566777889999999886644321 232 235778999
Q ss_pred eeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCccee-cC--CCCccccCcee
Q 003363 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LT--ESISSAFFPRF 379 (826)
Q Consensus 303 SPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-Lt--~~~~~~~~p~~ 379 (826)
|+.|+ |+.++. .++.|.++|= .++.+.+ +. .+...+.+..|
T Consensus 270 s~t~~-----lYvTaS--------------kDG~IklwDG-----------------VS~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 270 SSTGS-----LYVTAS--------------KDGAIKLWDG-----------------VSNRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred cCCcc-----EEEEec--------------cCCcEEeecc-----------------ccHHHHHHHHhhcCCceeeeEEE
Confidence 99999 666652 3346777873 3343322 21 12335788999
Q ss_pred cCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEE
Q 003363 380 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (826)
Q Consensus 380 SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (826)
+.+||+|+-...+ ..+++|.+.++.......+... . +...+ .....|.....+++
T Consensus 314 tkn~kyiLsSG~D-----------S~vkLWEi~t~R~l~~YtGAg~-t------grq~~-------rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 314 TKNGKYILSSGKD-----------STVKLWEISTGRMLKEYTGAGT-T------GRQKH-------RTQAVFNHTEDYVL 368 (430)
T ss_pred ccCCeEEeecCCc-----------ceeeeeeecCCceEEEEecCCc-c------cchhh-------hhhhhhcCccceEE
Confidence 9999998644433 3466777777655322211100 0 00000 11334444444554
Q ss_pred EEEEeCCeEEEEEEECCCCcEEEecCCCC--CeeeEEEeecCC
Q 003363 460 LSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGD 500 (826)
Q Consensus 460 ~~~~~~~~~~l~~vdl~tg~~~~lt~~~~--~~~~~~~s~dg~ 500 (826)
|- .+....+..||..++....+..... ...+..-||.+-
T Consensus 369 ~p--DEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 369 FP--DEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred cc--ccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC
Confidence 43 2345567888887777666544322 334444455443
No 293
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.76 E-value=0.0029 Score=64.89 Aligned_cols=108 Identities=13% Similarity=0.036 Sum_probs=60.8
Q ss_pred eEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCC
Q 003363 98 AWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE 177 (826)
Q Consensus 98 ~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~ 177 (826)
....+..|+||+.++|.... .....|+.... ++....+. .. .....|+|+|+|...++.. .. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~------~~~~~L~~~~~---~~~~~~~~-~g-----~~l~~PS~d~~g~~W~v~~-~~-~ 87 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEG------DGGRSLYVGPA---GGPVRPVL-TG-----GSLTRPSWDPDGWVWTVDD-GS-G 87 (253)
T ss_pred cccceEECCCCCeEEEEEEc------CCCCEEEEEcC---CCcceeec-cC-----CccccccccCCCCEEEEEc-CC-C
Confidence 35577789999999998611 23556776542 22222222 11 3578899999976554443 22 2
Q ss_pred CCeEEEEecCCcee-EEEecCCCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 178 SPIQFELWSQSQLE-KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 178 ~~~~~~i~~~~~~~-~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
...++.-...+... ...+... ..+.| ..+++||||++||++.+..
T Consensus 88 ~~~~~~~~~~g~~~~~~v~~~~-~~~~I------~~l~vSpDG~RvA~v~~~~ 133 (253)
T PF10647_consen 88 GVRVVRDSASGTGEPVEVDWPG-LRGRI------TALRVSPDGTRVAVVVEDG 133 (253)
T ss_pred ceEEEEecCCCcceeEEecccc-cCCce------EEEEECCCCcEEEEEEecC
Confidence 11122111223222 2222221 11123 7999999999999998765
No 294
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.76 E-value=0.00041 Score=71.51 Aligned_cols=269 Identities=12% Similarity=0.106 Sum_probs=143.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
+.+..+.|-++...|+.. +...++.+| ..++...+...-.+.-|.| ..+.+-+|++++.-.+.+....
T Consensus 176 gev~~v~~l~~sdtlatg-----g~Dr~Ik~W~v~~~k~~~~~tLaGs~g~i------t~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATG-----GSDRIIKLWNVLGEKSELISTLAGSLGNI------TSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred cccceeEEccCcchhhhc-----chhhhhhhhhcccchhhhhhhhhccCCCc------ceeeecCCCceEEeecCCCcee
Confidence 346677888777777652 445577888 2222211111112222333 7889999999988877776544
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (826)
. |+............|..-.....|...--....+..+..|..||+..+....-. .+. ..+.+++-+ ..
T Consensus 245 ~--Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~-S~cnDI~~~---~~---- 313 (459)
T KOG0288|consen 245 L--WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV-LPG-SQCNDIVCS---IS---- 313 (459)
T ss_pred e--eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc-ccc-ccccceEec---ce----
Confidence 3 332222222222222222211111111011223345567788888665432210 121 133344443 12
Q ss_pred EEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 313 lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
.++.+ ..+..|..+|. .++..+.--+..+.+.+...|+||..|.-.+.+
T Consensus 314 ~~~Sg--------------H~DkkvRfwD~-----------------Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 314 DVISG--------------HFDKKVRFWDI-----------------RSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred eeeec--------------ccccceEEEec-----------------cCCceeeEeecCcceeeEeeccCCeEEeeecCC
Confidence 33333 12235788886 455554444455678899999999998755433
Q ss_pred CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCccccc-CCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS-SSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 393 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~-~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
..|-++|+.+.+.+...... .| .+ .......|||||.+++.. +.+..+|
T Consensus 363 -----------dtl~viDlRt~eI~~~~sA~-------------g~---k~asDwtrvvfSpd~~YvaAG---S~dgsv~ 412 (459)
T KOG0288|consen 363 -----------DTLKVIDLRTKEIRQTFSAE-------------GF---KCASDWTRVVFSPDGSYVAAG---SADGSVY 412 (459)
T ss_pred -----------CceeeeecccccEEEEeecc-------------cc---ccccccceeEECCCCceeeec---cCCCcEE
Confidence 34778888775543211110 01 11 124578899999976544 3455678
Q ss_pred EEECCCCcEEEecCCCC---CeeeEEEeecCCEEEEE
Q 003363 472 SVNVSSGELLRITPAES---NFSWSLLTLDGDNIIAV 505 (826)
Q Consensus 472 ~vdl~tg~~~~lt~~~~---~~~~~~~s~dg~~l~~~ 505 (826)
.+++.+|+++.+....+ .+....|++.|..++..
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 88888999887755444 23445666666655433
No 295
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.76 E-value=0.0037 Score=66.56 Aligned_cols=170 Identities=13% Similarity=0.206 Sum_probs=99.8
Q ss_pred cccEEEEeCCCC--CeEEEEecCCCCCCeEEEEe-cC-CceeEEEec--CCCccccccCCCcccceeecCCCCeEEEEee
Q 003363 154 TGASAVVPSPSG--SKLLVVRNPENESPIQFELW-SQ-SQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (826)
Q Consensus 154 ~~~~~~~~SPdG--~~la~~~~~~~~~~~~~~i~-~~-~~~~~~~~~--~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~ 227 (826)
.++...+|||-| ..|||..-..++.+....++ .. +.....-.+ ..+ -.+.|.+.|+.|.+...
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~-----------~qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSG-----------VQLKWQVLGKYLLVLVM 242 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecc-----------cEEEEecCCceEEEEEE
Confidence 468889999974 45677654444555455555 21 221111111 122 27889999999999877
Q ss_pred cCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003363 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (826)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (826)
...... +++. +..+||++++....++.. ......+.+++|.|+++
T Consensus 243 t~~ksn-----------------Ksyf----------------gesnLyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~ 287 (561)
T COG5354 243 THTKSN-----------------KSYF----------------GESNLYLLRITERSIPVE--KDLKDPVHDFTWEPLSS 287 (561)
T ss_pred Eeeecc-----------------ccee----------------ccceEEEEeeccccccee--ccccccceeeeecccCC
Confidence 653110 0000 237899999986555544 22234677999999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEE
Q 003363 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 308 ~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
+ .+..+-- .+..+-..|+ .+.....+.+ ..-..+.|||.+++++
T Consensus 288 ~----F~vi~g~-------------~pa~~s~~~l-----------------r~Nl~~~~Pe--~~rNT~~fsp~~r~il 331 (561)
T COG5354 288 R----FAVISGY-------------MPASVSVFDL-----------------RGNLRFYFPE--QKRNTIFFSPHERYIL 331 (561)
T ss_pred c----eeEEecc-------------cccceeeccc-----------------ccceEEecCC--cccccccccCcccEEE
Confidence 9 6655411 2224555555 3332222222 2234578999999999
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCC
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
+..-.. -+.++-++|..+
T Consensus 332 ~agF~n--------l~gni~i~~~~~ 349 (561)
T COG5354 332 FAGFDN--------LQGNIEIFDPAG 349 (561)
T ss_pred EecCCc--------cccceEEeccCC
Confidence 876543 235677787554
No 296
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.011 Score=64.65 Aligned_cols=186 Identities=12% Similarity=0.077 Sum_probs=115.1
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..+.++|.++.++..- ..-......++++||++. ++... .. ++...+..+|.
T Consensus 96 ~~v~vid~~~~~~~~~--~~vG~~P~~~~~~~~~~~----vYV~n-~~-----------~~~~~vsvid~---------- 147 (381)
T COG3391 96 NTVSVIDTATNTVLGS--IPVGLGPVGLAVDPDGKY----VYVAN-AG-----------NGNNTVSVIDA---------- 147 (381)
T ss_pred CeEEEEcCcccceeeE--eeeccCCceEEECCCCCE----EEEEe-cc-----------cCCceEEEEeC----------
Confidence 6788999766655443 233336778999999997 65554 11 13457888886
Q ss_pred hhhcCCCCCCcce-ecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeee
Q 003363 353 ELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (826)
Q Consensus 353 ~~~~~~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 431 (826)
.++... .+..+. .....+++|||++++-.... .+.|..+|..+....+ . .....+.+
T Consensus 148 -------~t~~~~~~~~vG~-~P~~~a~~p~g~~vyv~~~~----------~~~v~vi~~~~~~v~~-~-~~~~~~~~-- 205 (381)
T COG3391 148 -------ATNKVTATIPVGN-TPTGVAVDPDGNKVYVTNSD----------DNTVSVIDTSGNSVVR-G-SVGSLVGV-- 205 (381)
T ss_pred -------CCCeEEEEEecCC-CcceEEECCCCCeEEEEecC----------CCeEEEEeCCCcceec-c-cccccccc--
Confidence 444432 222222 23678999999987655522 3678899865543322 1 10001110
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CeeeEEEeecCCEEEEEEeCC
Q 003363 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~--~~~~~~~s~dg~~l~~~~s~~ 509 (826)
+ .......+++||+.+|+.........+..+|..++.+........ ......++|+|+.++.....
T Consensus 206 ------~-----~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~- 273 (381)
T COG3391 206 ------G-----TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ- 273 (381)
T ss_pred ------C-----CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC-
Confidence 0 123466789999988887655555789999999988887622222 12335788899887777655
Q ss_pred CCCCeEEEEeecc
Q 003363 510 VDVPQVKYGYFVD 522 (826)
Q Consensus 510 ~~p~~l~~~~~~~ 522 (826)
...+++++...
T Consensus 274 --~~~V~vid~~~ 284 (381)
T COG3391 274 --GGTVSVIDGAT 284 (381)
T ss_pred --CCeEEEEeCCC
Confidence 55577777654
No 297
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.73 E-value=0.0033 Score=64.45 Aligned_cols=266 Identities=15% Similarity=0.119 Sum_probs=140.3
Q ss_pred hcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEe-CCCCCeEEEEecCCCCCCeEEEEe---cCCceeEEEec
Q 003363 121 LANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVP-SPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHV 196 (826)
Q Consensus 121 ~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~-SPdG~~la~~~~~~~~~~~~~~i~---~~~~~~~~~~~ 196 (826)
..+.+.+.+.+++. .|....++.... +.+...+| .++-..-.|++... .|.+.+| .+......+..
T Consensus 119 ltgsYDg~~riWd~--~Gk~~~~~~Ght-----~~ik~v~~v~~n~~~~~fvsas~---Dqtl~Lw~~~~~~~~~~~~~~ 188 (423)
T KOG0313|consen 119 LTGSYDGTSRIWDL--KGKSIKTIVGHT-----GPIKSVAWVIKNSSSCLFVSASM---DQTLRLWKWNVGENKVKALKV 188 (423)
T ss_pred EEeecCCeeEEEec--CCceEEEEecCC-----cceeeeEEEecCCccceEEEecC---CceEEEEEecCchhhhhHHhH
Confidence 34456667777664 444445555443 33554555 44443334444332 3455666 23222333333
Q ss_pred CCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEE
Q 003363 197 PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLF 276 (826)
Q Consensus 197 ~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~ 276 (826)
..+....| ..++-.+||.+++..+-+.....+..... .....+ ....+++ ..-
T Consensus 189 ~~GHk~~V------~sVsv~~sgtr~~SgS~D~~lkiWs~~~~--~~~~~E------------------~~s~~rr-k~~ 241 (423)
T KOG0313|consen 189 CRGHKRSV------DSVSVDSSGTRFCSGSWDTMLKIWSVETD--EEDELE------------------SSSNRRR-KKQ 241 (423)
T ss_pred hcccccce------eEEEecCCCCeEEeecccceeeecccCCC--cccccc------------------ccchhhh-hhh
Confidence 34555555 89999999999988876664432221110 000000 0000000 000
Q ss_pred EEEccCCceEeccCC-CCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhh
Q 003363 277 VININSGEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 355 (826)
Q Consensus 277 v~d~~~g~~~~l~~~-~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 355 (826)
..+-.++.-.++... .....+.++.|++ ... ++-++|+. .|..+|+.
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v----~yS~SwDH---------------TIk~WDle------------ 289 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV----IYSVSWDH---------------TIKVWDLE------------ 289 (423)
T ss_pred hhhhcccccCceEEecccccceeeEEEcC-CCc----eEeecccc---------------eEEEEEee------------
Confidence 011112221111101 2234677899998 332 55555432 68889982
Q ss_pred cCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCC
Q 003363 356 ESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG 435 (826)
Q Consensus 356 ~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (826)
.++....++.. ........+|+.+.|+-.+.+ .+|.++|..++........
T Consensus 290 ----tg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssd-----------r~irl~DPR~~~gs~v~~s------------- 340 (423)
T KOG0313|consen 290 ----TGGLKSTLTTN-KSLNCISYSPLSKLLASGSSD-----------RHIRLWDPRTGDGSVVSQS------------- 340 (423)
T ss_pred ----cccceeeeecC-cceeEeecccccceeeecCCC-----------CceeecCCCCCCCceeEEe-------------
Confidence 33344455543 346678889988888766654 4688999877644211111
Q ss_pred CCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC
Q 003363 436 DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 487 (826)
Q Consensus 436 ~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~ 487 (826)
|-| +...+..+.|+|-..+++++.+.++...+|-+.-..+-+.-|....
T Consensus 341 --~~g-H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~ 389 (423)
T KOG0313|consen 341 --LIG-HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN 389 (423)
T ss_pred --eec-chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCC
Confidence 111 1224567889999999988888888888886655444555555443
No 298
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.72 E-value=0.0014 Score=69.01 Aligned_cols=207 Identities=13% Similarity=0.126 Sum_probs=120.8
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-cchHHHHHHHHCCcEEEEECCCCCCCC-chhh-----------
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGF-GEEA----------- 639 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la~~G~~Vl~~d~rG~~g~-G~~~----------- 639 (826)
+.++- .+|.|.. .++...+||++||-+...... ........|.++|+.++.+..+.-... -...
T Consensus 71 ~~~fl-aL~~~~~--~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a~ 147 (310)
T PF12048_consen 71 EERFL-ALWRPAN--SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSAG 147 (310)
T ss_pred CEEEE-EEEeccc--CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCCC
Confidence 34444 4666653 567788999999966554433 344567788999999999887651100 0000
Q ss_pred hhcCCC-----------------CCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC-ceeEEEe
Q 003363 640 LQSLPG-----------------KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAA 701 (826)
Q Consensus 640 ~~~~~~-----------------~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-~~~a~v~ 701 (826)
...... ........-+.+++.++.+++ ..+|+|+||..|+++++.++...+. .+.+.|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~ 224 (310)
T PF12048_consen 148 DQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGWAARYLAEKPPPMPDALVL 224 (310)
T ss_pred CCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHHHHHhcCCCcccCeEEE
Confidence 000000 000111234556666666665 2459999999999999999987764 4788888
Q ss_pred cCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHH
Q 003363 702 RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 781 (826)
Q Consensus 702 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~ 781 (826)
+++..... .. .......+.+++.|+|=|++.. .......+.+=
T Consensus 225 I~a~~p~~-------------------------------~~-----n~~l~~~la~l~iPvLDi~~~~-~~~~~~~a~~R 267 (310)
T PF12048_consen 225 INAYWPQP-------------------------------DR-----NPALAEQLAQLKIPVLDIYSAD-NPASQQTAKQR 267 (310)
T ss_pred EeCCCCcc-------------------------------hh-----hhhHHHHhhccCCCEEEEecCC-ChHHHHHHHHH
Confidence 87743110 00 0011234567889999999887 33222222222
Q ss_pred HHHHHhC-CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 782 ARALREK-GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 782 ~~~l~~~-g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
....++. ....+-+.+++..|.....+ ....++|..|++++
T Consensus 268 ~~~a~r~~~~~YrQ~~L~~~~~~~~~~~--~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 268 KQAAKRNKKPDYRQIQLPGLPDNPSGWQ--EQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHHhccCCCceeEecCCCCCChhhHH--HHHHHHHHHHHHhh
Confidence 2222222 23566666777666443222 23788999999876
No 299
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.71 E-value=0.00028 Score=70.83 Aligned_cols=102 Identities=18% Similarity=0.305 Sum_probs=60.0
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHH--------HHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFL--------SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~l--------a~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (826)
..|||+||..++ ...+......+ ....+.++.+||..... . ..+..-....+-+..+++.+.+
T Consensus 5 ~pVlFIhG~~Gs--~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s---~----~~g~~l~~q~~~~~~~i~~i~~ 75 (225)
T PF07819_consen 5 IPVLFIHGNAGS--YKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELS---A----FHGRTLQRQAEFLAEAIKYILE 75 (225)
T ss_pred CEEEEECcCCCC--HhHHHHHHHHHhhhhhhccCccceeEEEeccCcccc---c----cccccHHHHHHHHHHHHHHHHH
Confidence 569999995443 22333333222 12357899999876321 0 0111111123445556666655
Q ss_pred cC---CCCCCcEEEEEecchHHHHHHHHHhCC---CceeEEEecC
Q 003363 665 MG---LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARN 703 (826)
Q Consensus 665 ~~---~~d~~rv~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~ 703 (826)
.. ...+++|.|+||||||.++-.++...+ +.++.+|..+
T Consensus 76 ~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~ 120 (225)
T PF07819_consen 76 LYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLG 120 (225)
T ss_pred hhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEc
Confidence 42 356789999999999999888776543 3577766554
No 300
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.70 E-value=0.0029 Score=73.16 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=60.1
Q ss_pred CeEEEEecCCCCCCeEEEEe-cCCceeEE-EecCCCccccccCCCcccceeecCCCCeEEE-EeecCCCCCCCccCCCCC
Q 003363 166 SKLLVVRNPENESPIQFELW-SQSQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAY-VAEEPSPSKPTFSLGSTK 242 (826)
Q Consensus 166 ~~la~~~~~~~~~~~~~~i~-~~~~~~~~-~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~-~~~~~~~~~~~~~~~~~~ 242 (826)
.+|||+.+.. + .+..++ ++...+.+ +.....+ ..|.|||||++||| ++-+...
T Consensus 319 tkiAfv~~~~-~--~L~~~D~dG~n~~~ve~~~~~~i----------~sP~~SPDG~~vAY~ts~e~~~----------- 374 (912)
T TIGR02171 319 AKLAFRNDVT-G--NLAYIDYTKGASRAVEIEDTISV----------YHPDISPDGKKVAFCTGIEGLP----------- 374 (912)
T ss_pred eeEEEEEcCC-C--eEEEEecCCCCceEEEecCCCce----------ecCcCCCCCCEEEEEEeecCCC-----------
Confidence 4788987632 2 577777 55555555 5544444 78999999999999 6544311
Q ss_pred CCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc--eEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003363 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (826)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~--~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~ 319 (826)
+.+.||+-|+.+.. +..|. .. ...+-.....++|... |||++.-
T Consensus 375 ----------------------------g~s~vYv~~L~t~~~~~vkl~-ve-~aaiprwrv~e~gdt~---ivyv~~a 420 (912)
T TIGR02171 375 ----------------------------GKSSVYVRNLNASGSGLVKLP-VE-NAAIPRWRVLENGDTV---IVYVSDA 420 (912)
T ss_pred ----------------------------CCceEEEEehhccCCCceEee-cc-cccccceEecCCCCeE---EEEEcCC
Confidence 34779999987543 23331 11 2223334456777775 8888753
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.69 E-value=0.0028 Score=65.13 Aligned_cols=137 Identities=17% Similarity=0.212 Sum_probs=77.5
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEe-eCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWA-PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wS-PDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
...|+.++.++++.+.+. .+. ...+++. +||+ |++... ..+.++|.
T Consensus 21 ~~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~-----l~v~~~----------------~~~~~~d~-------- 67 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGR-----LYVADS----------------GGIAVVDP-------- 67 (246)
T ss_dssp TTEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSE-----EEEEET----------------TCEEEEET--------
T ss_pred CCEEEEEECCCCeEEEEe-cCC---CceEEEEccCCE-----EEEEEc----------------CceEEEec--------
Confidence 368999999999887652 222 4455666 6644 555431 14555576
Q ss_pred hhhhhcCCCCCCcceecCCC------CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccccee
Q 003363 351 ELELKESSSEDLPVVNLTES------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~------~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 424 (826)
.+++.+.+... ........+.|||+ |+|.......... .....||+++.. ++...+...
T Consensus 68 ---------~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~--~~~g~v~~~~~~-~~~~~~~~~-- 132 (246)
T PF08450_consen 68 ---------DTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASG--IDPGSVYRIDPD-GKVTVVADG-- 132 (246)
T ss_dssp ---------TTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTC--GGSEEEEEEETT-SEEEEEEEE--
T ss_pred ---------CCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcccc--ccccceEEECCC-CeEEEEecC--
Confidence 66665544332 23356788999999 6666654321110 111579999876 332111110
Q ss_pred eeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003363 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (826)
Q Consensus 425 ~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~ 476 (826)
+ . ....++|+|||+.||++....+ .|++++++
T Consensus 133 -----~------~-------~pNGi~~s~dg~~lyv~ds~~~--~i~~~~~~ 164 (246)
T PF08450_consen 133 -----L------G-------FPNGIAFSPDGKTLYVADSFNG--RIWRFDLD 164 (246)
T ss_dssp -----E------S-------SEEEEEEETTSSEEEEEETTTT--EEEEEEEE
T ss_pred -----c------c-------cccceEECCcchheeecccccc--eeEEEecc
Confidence 0 0 1246789999999988654344 46666654
No 302
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.0051 Score=67.66 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=100.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
+.+...++|-+.+.||..+..+ .+++|. +--...+++. +..+.| +++.|++.| +|..+.
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g-----~IEiwN~~~~w~~~~vi~g--~~drsI------E~L~W~e~~-RLFS~g---- 87 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDG-----NIEIWNLSNNWFLEPVIHG--PEDRSI------ESLAWAEGG-RLFSSG---- 87 (691)
T ss_pred cceEEEEEeccCCceeeeccCC-----cEEEEccCCCceeeEEEec--CCCCce------eeEEEccCC-eEEeec----
Confidence 5688999999999999887665 678883 2233444443 343344 899999444 465431
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
....|.-||+.+++.+... -.....+.+++-+|.++.
T Consensus 88 ----------------------------------------~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~-- 124 (691)
T KOG2048|consen 88 ----------------------------------------LSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTI-- 124 (691)
T ss_pred ----------------------------------------CCceEEEEecccCceeEEe-cCCCcceeEEEeCCccce--
Confidence 3367888999888766441 223345667788888876
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc---eecCCCCccccCceecCCCCEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
+...+ .+. .|+.++. ..+.+ +.|--..+.+.+..|+|+|.+|+
T Consensus 125 --l~Igc-------------ddG--vl~~~s~-----------------~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 125 --LAIGC-------------DDG--VLYDFSI-----------------GPDKITYKRSLMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred --EEeec-------------CCc--eEEEEec-----------------CCceEEEEeecccccceEEEEEecCCccEEE
Confidence 65554 222 5666655 33332 22222346688999999999998
Q ss_pred EEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 388 f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
-.+.+ ..|.+||..++..
T Consensus 171 ~Gs~D-----------g~Iriwd~~~~~t 188 (691)
T KOG2048|consen 171 GGSID-----------GVIRIWDVKSGQT 188 (691)
T ss_pred ecccC-----------ceEEEEEcCCCce
Confidence 65544 3577888776554
No 303
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.68 E-value=0.016 Score=61.66 Aligned_cols=93 Identities=25% Similarity=0.292 Sum_probs=52.9
Q ss_pred CCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCc
Q 003363 360 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 439 (826)
Q Consensus 360 ~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 439 (826)
++....++...+....-.+|||||.+||..+.+ +.||++..+.++.+ ...+-.+..
T Consensus 436 e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d-----------~~iyiy~Vs~~g~~--------y~r~~k~~g----- 491 (626)
T KOG2106|consen 436 ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD-----------NHIYIYRVSANGRK--------YSRVGKCSG----- 491 (626)
T ss_pred ccceeEEEEecCCceEEEEEcCCCCEEEEecCC-----------CeEEEEEECCCCcE--------EEEeeeecC-----
Confidence 454444444445567778999999999988865 34555554443332 111111100
Q ss_pred ccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003363 440 GLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (826)
Q Consensus 440 g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~ 485 (826)
.-+..+.||+|++.|. ...++.+|..+. -++...++.
T Consensus 492 ----s~ithLDwS~Ds~~~~---~~S~d~eiLyW~--~~~~~~~ts 528 (626)
T KOG2106|consen 492 ----SPITHLDWSSDSQFLV---SNSGDYEILYWK--PSECKQITS 528 (626)
T ss_pred ----ceeEEeeecCCCceEE---eccCceEEEEEc--cccCcccce
Confidence 1234678999998553 345677777663 344444444
No 304
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.67 E-value=0.00054 Score=69.41 Aligned_cols=231 Identities=14% Similarity=0.199 Sum_probs=117.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch-----HHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-----~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
.++..++-. ..+++|+||-.|--+-.. ...|. ..++.+ .+.|.++-+|.+|...-... ++..+..
T Consensus 10 ~v~V~v~G~----~~~~kp~ilT~HDvGlNh-~scF~~ff~~~~m~~i-~~~f~i~Hi~aPGqe~ga~~----~p~~y~y 79 (283)
T PF03096_consen 10 SVHVTVQGD----PKGNKPAILTYHDVGLNH-KSCFQGFFNFEDMQEI-LQNFCIYHIDAPGQEEGAAT----LPEGYQY 79 (283)
T ss_dssp EEEEEEESS------TTS-EEEEE--TT--H-HHHCHHHHCSHHHHHH-HTTSEEEEEE-TTTSTT---------TT---
T ss_pred EEEEEEEec----CCCCCceEEEeccccccc-hHHHHHHhcchhHHHH-hhceEEEEEeCCCCCCCccc----ccccccc
Confidence 455555532 234789999999743221 11122 233444 45699999999997653222 3444334
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhc---------------cC
Q 003363 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---------------GT 714 (826)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~---------------~~ 714 (826)
..++++.+.+..++++-.+ +.|.-+|--+|+++-+.+|..+|+++.++|+++|........ +.
T Consensus 80 Psmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~L~~~gm 157 (283)
T PF03096_consen 80 PSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWLLYSYGM 157 (283)
T ss_dssp --HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH-------CT
T ss_pred cCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhccccccccc
Confidence 4577777777777776433 679999999999999999999999999999999865421110 00
Q ss_pred CC-CCCchhhhhccCcC-----------CccCCCCCChhhHHHHh----hc-CcccccCCCCCcEEEEEeCCCCCCCcHH
Q 003363 715 TD-IPDWCYVESYGSKG-----------KDSFTESPSVEDLTRFH----SK-SPISHISKVKTPTIFLLGAQDLRVPVSN 777 (826)
Q Consensus 715 ~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~----~~-sp~~~~~~i~~PvLii~G~~D~~vp~~~ 777 (826)
+. ..+......++... ...+.......+...|. .. +.........||+|++.|+.-+.+ +.
T Consensus 158 t~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp~~--~~ 235 (283)
T PF03096_consen 158 TSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSPHV--DD 235 (283)
T ss_dssp TS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTSTTH--HH
T ss_pred ccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCcch--hh
Confidence 00 00000001111100 00111111112222211 11 112234556799999999998876 88
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 778 GLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 778 ~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
+.++..+|.. ....++.++++|=....++ .....+.+.-|+.
T Consensus 236 vv~~ns~Ldp--~~ttllkv~dcGglV~eEq-P~klaea~~lFlQ 277 (283)
T PF03096_consen 236 VVEMNSKLDP--TKTTLLKVADCGGLVLEEQ-PGKLAEAFKLFLQ 277 (283)
T ss_dssp HHHHHHHS-C--CCEEEEEETT-TT-HHHH--HHHHHHHHHHHHH
T ss_pred HHHHHhhcCc--ccceEEEecccCCcccccC-cHHHHHHHHHHHc
Confidence 8889888865 4688999998865443222 2244455544543
No 305
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=0.024 Score=53.92 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=68.3
Q ss_pred CCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccC-ceecCCCCEEEEEeccCCCCCCCCcccceEEEEe
Q 003363 333 RPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFF-PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (826)
Q Consensus 333 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~-p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d 410 (826)
.+|.||.-|. ..|+ ...+..+.+.+.. -.| .|-.++-.+ +...|..||
T Consensus 161 gdc~iy~tdc-----------------~~g~~~~a~sghtghilalysw--n~~m~~sgs-----------qdktirfwd 210 (350)
T KOG0641|consen 161 GDCKIYITDC-----------------GRGQGFHALSGHTGHILALYSW--NGAMFASGS-----------QDKTIRFWD 210 (350)
T ss_pred CcceEEEeec-----------------CCCCcceeecCCcccEEEEEEe--cCcEEEccC-----------CCceEEEEe
Confidence 5679999998 4443 5666666665432 234 344333222 224577788
Q ss_pred CCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE-EecCCCCC
Q 003363 411 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAESN 489 (826)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~-~lt~~~~~ 489 (826)
+.-....+ ++. .+..-.|+-.+.+..++..|.|+ |+.+...++ ....+|+.+|+.. +.-+...+
T Consensus 211 lrv~~~v~----------~l~--~~~~~~glessavaav~vdpsgr-ll~sg~~ds--sc~lydirg~r~iq~f~phsad 275 (350)
T KOG0641|consen 211 LRVNSCVN----------TLD--NDFHDGGLESSAVAAVAVDPSGR-LLASGHADS--SCMLYDIRGGRMIQRFHPHSAD 275 (350)
T ss_pred eeccceee----------ecc--CcccCCCcccceeEEEEECCCcc-eeeeccCCC--ceEEEEeeCCceeeeeCCCccc
Confidence 75432211 110 01111122223345667788997 444443333 3444566677654 44455556
Q ss_pred eeeEEEeecCCEEEEEEe
Q 003363 490 FSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 490 ~~~~~~s~dg~~l~~~~s 507 (826)
+....|+|...+++..+.
T Consensus 276 ir~vrfsp~a~yllt~sy 293 (350)
T KOG0641|consen 276 IRCVRFSPGAHYLLTCSY 293 (350)
T ss_pred eeEEEeCCCceEEEEecc
Confidence 666788887666554443
No 306
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.66 E-value=0.017 Score=64.34 Aligned_cols=214 Identities=15% Similarity=0.158 Sum_probs=122.8
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
..++.|||++.|||+-+.. +..+..|.+.|+.+|+...-.
T Consensus 132 g~~~~s~D~~~la~s~D~~---------------------------------------G~e~y~lr~kdL~tg~~~~d~- 171 (682)
T COG1770 132 GAASISPDHNLLAYSVDVL---------------------------------------GDEQYTLRFKDLATGEELPDE- 171 (682)
T ss_pred eeeeeCCCCceEEEEEecc---------------------------------------cccEEEEEEEecccccccchh-
Confidence 6889999999999975543 224578999999999764331
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
+ ....+.++|.+|++. ++|+..... .|+..||+..+.. ....-+.+.+.
T Consensus 172 i--~~~~~~~~Wa~d~~~----lfYt~~d~~----------~rp~kv~~h~~gt---------------~~~~d~lvyeE 220 (682)
T COG1770 172 I--TNTSGSFAWAADGKT----LFYTRLDEN----------HRPDKVWRHRLGT---------------PGSSDELVYEE 220 (682)
T ss_pred h--cccccceEEecCCCe----EEEEEEcCC----------CCcceEEEEecCC---------------CCCcceEEEEc
Confidence 1 113668999999999 999874332 2667899888721 11333444433
Q ss_pred Cc--cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCC
Q 003363 371 IS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 448 (826)
Q Consensus 371 ~~--~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 448 (826)
.. ...+..=|...++|+...+. ..+.++++++.+..+.. ..-+.+ +.... .
T Consensus 221 ~d~~f~~~v~~s~s~~yi~i~~~~--------~~tsE~~ll~a~~p~~~-----p~vv~p-----r~~g~---------e 273 (682)
T COG1770 221 KDDRFFLSVGRSRSEAYIVISLGS--------HITSEVRLLDADDPEAE-----PKVVLP-----RENGV---------E 273 (682)
T ss_pred CCCcEEEEeeeccCCceEEEEcCC--------CcceeEEEEecCCCCCc-----eEEEEE-----cCCCc---------E
Confidence 22 22333345666777655533 24578899887653321 111111 11000 0
Q ss_pred CccccCCCEEEEEEEeCC-eEEEEEEEC--CCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 449 NPWLSDGCTMLLSSIWGS-SQVIISVNV--SSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~~-~~~l~~vdl--~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
..-..-|..+++.++..+ +..|+...+ .....+.+.+...+.....++.-.+.|+.......- |++++.+..++
T Consensus 274 Y~~eh~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~gl-p~v~v~~~~~~ 350 (682)
T COG1770 274 YSVEHGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGL-PRVVVRDRKTG 350 (682)
T ss_pred EeeeecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCC-ceEEEEecCCC
Confidence 011123556777776666 556666544 222344444444444555666667777777666554 44776665433
No 307
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.65 E-value=0.00027 Score=71.72 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=64.6
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHH-HHHHHHcCCCCCC
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPS 671 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 671 (826)
+.|+++|++.++ ...|..+++.|...++.|+.++++|... + ......++++.+. ++.+.+.. ...
T Consensus 1 ~~lf~~p~~gG~--~~~y~~la~~l~~~~~~v~~i~~~~~~~-~---------~~~~~si~~la~~y~~~I~~~~--~~g 66 (229)
T PF00975_consen 1 RPLFCFPPAGGS--ASSYRPLARALPDDVIGVYGIEYPGRGD-D---------EPPPDSIEELASRYAEAIRARQ--PEG 66 (229)
T ss_dssp -EEEEESSTTCS--GGGGHHHHHHHTTTEEEEEEECSTTSCT-T---------SHEESSHHHHHHHHHHHHHHHT--SSS
T ss_pred CeEEEEcCCccC--HHHHHHHHHhCCCCeEEEEEEecCCCCC-C---------CCCCCCHHHHHHHHHHHhhhhC--CCC
Confidence 358889987764 6688888888866568999999998431 0 1112235554433 34444432 224
Q ss_pred cEEEEEecchHHHHHHHHHhC---CCceeEEEecCC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNP 704 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p 704 (826)
++.|+|||+||.+|..+|.+. ...+..++++.+
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 899999999999999988643 334667776663
No 308
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.65 E-value=0.00049 Score=69.87 Aligned_cols=211 Identities=14% Similarity=0.068 Sum_probs=132.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc-eeE---EEecCCCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ-LEK---EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~-~~~---~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
..+...+++-.|++||..+..- . ..+|+-.+ .+. +......+ ..+.|-|-|.+|+..+.+.
T Consensus 151 ~sv~di~~~a~Gk~l~tcSsDl--~---~~LWd~~~~~~c~ks~~gh~h~v----------S~V~f~P~gd~ilS~srD~ 215 (406)
T KOG0295|consen 151 DSVFDISFDASGKYLATCSSDL--S---AKLWDFDTFFRCIKSLIGHEHGV----------SSVFFLPLGDHILSCSRDN 215 (406)
T ss_pred cceeEEEEecCccEEEecCCcc--c---hhheeHHHHHHHHHHhcCcccce----------eeEEEEecCCeeeeccccc
Confidence 4588899999999998775532 1 45663222 111 11111222 7899999999999988887
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCC
Q 003363 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~ 309 (826)
+... |+...+-..+....+..|..-+.-..|+--..+......|.+|-+++++.+.+. ...+..+.-++|.|.....
T Consensus 216 tik~--We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l-R~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 216 TIKA--WECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL-REHEHPVECIAWAPESSYP 292 (406)
T ss_pred ceeE--EecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh-hccccceEEEEecccccCc
Confidence 7654 443344455566677778876666667322334445678999999988655542 3344556677888865431
Q ss_pred ccEEEEEeecCcceeeeeee--eccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEE
Q 003363 310 HQYLVFVGWSSETRKLGIKY--CYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~--~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l 386 (826)
.|-+.+... .|..+ ...++..|..+|+ .++. .-.|..+...+...+|||-||+|
T Consensus 293 --~i~~at~~~----~~~~~l~s~SrDktIk~wdv-----------------~tg~cL~tL~ghdnwVr~~af~p~Gkyi 349 (406)
T KOG0295|consen 293 --SISEATGST----NGGQVLGSGSRDKTIKIWDV-----------------STGMCLFTLVGHDNWVRGVAFSPGGKYI 349 (406)
T ss_pred --chhhccCCC----CCccEEEeecccceEEEEec-----------------cCCeEEEEEecccceeeeeEEcCCCeEE
Confidence 011111100 01111 1235567888888 5554 45677777889999999999999
Q ss_pred EEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
+-...+ ..|.+||+.++.-
T Consensus 350 ~ScaDD-----------ktlrvwdl~~~~c 368 (406)
T KOG0295|consen 350 LSCADD-----------KTLRVWDLKNLQC 368 (406)
T ss_pred EEEecC-----------CcEEEEEecccee
Confidence 766654 4589999887554
No 309
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.63 E-value=0.00022 Score=79.90 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=68.6
Q ss_pred CcEEEEEcCCCCCCCCc--cchHHHHHHHHCCcEEEEECCCCCCCCchhhh------hcCCCCCCcchHHHHHHHHHHHH
Q 003363 592 DPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL------QSLPGKVGSQDVNDVLTAIDHVI 663 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~------~~~~~~~~~~~~~D~~~~i~~l~ 663 (826)
.|++|++-| -+..... ..........+.|-.++++..|- ||.+.. +.+..-...+.++|+...++++.
T Consensus 29 gpifl~~gg-E~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~ 104 (434)
T PF05577_consen 29 GPIFLYIGG-EGPIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVK 104 (434)
T ss_dssp SEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHH
Confidence 788888844 2221110 01122333456799999999998 665532 11222223456889999999988
Q ss_pred HcC-CCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccc
Q 003363 664 DMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (826)
Q Consensus 664 ~~~-~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~ 707 (826)
++. ..+..++.++|.||||.+++++-.++|++|.++++.++++.
T Consensus 105 ~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 105 KKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 653 34556999999999999999999999999999998877543
No 310
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.62 E-value=0.0024 Score=60.73 Aligned_cols=108 Identities=21% Similarity=0.289 Sum_probs=77.6
Q ss_pred CcEEEEEcCCCCCCCCc-cchHHHHHHHHCCcEEEEECCCCCC-CCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCC
Q 003363 592 DPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSL-GFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~-~~~~~~~~la~~G~~Vl~~d~rG~~-g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (826)
.-.|||+-|-+...-.. .......+|.+.+|..+.+..|.+. |||... -..+.+|+..+++++...++
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~s--------lk~D~edl~~l~~Hi~~~~f-- 105 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFS--------LKDDVEDLKCLLEHIQLCGF-- 105 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccccccccccc--------ccccHHHHHHHHHHhhccCc--
Confidence 35677776533222222 2345667888999999999988753 355432 13468899999998876643
Q ss_pred CCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCccchh
Q 003363 670 PSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCNLA 709 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~~~~ 709 (826)
...|+|+|||-|..-.++++++ .+..++++|+.+|+.|..
T Consensus 106 St~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 106 STDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred ccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 3489999999999999888853 356789999999999876
No 311
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.61 E-value=0.00092 Score=68.33 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=57.7
Q ss_pred CCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 757 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 757 ~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
...+|-|++.++.|..++.++.+++.+..++.|.+++...+++..|.-.......+++..+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 44589999999999999999999999999999999999999999998777777778888887763
No 312
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.59 E-value=0.011 Score=62.91 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=55.3
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
....+|+|.++.....+. .......-+.|||||.. |+..+ .++.||++.++.
T Consensus 427 ~G~w~V~d~e~~~lv~~~--~d~~~ls~v~ysp~G~~----lAvgs---------------~d~~iyiy~Vs~------- 478 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTIH--TDNEQLSVVRYSPDGAF----LAVGS---------------HDNHIYIYRVSA------- 478 (626)
T ss_pred cceEEEEecccceeEEEE--ecCCceEEEEEcCCCCE----EEEec---------------CCCeEEEEEECC-------
Confidence 467899999997777663 33556778899999998 88877 223555555421
Q ss_pred hhhhcCCCCCCcceecCCCC-ccccCceecCCCCEEEEEe
Q 003363 352 LELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~-~~~~~p~~SpDG~~l~f~s 390 (826)
.+....++-... ..+....||+|+++|.-.+
T Consensus 479 --------~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 479 --------NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred --------CCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 333343332222 4577889999999886544
No 313
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.59 E-value=0.0041 Score=60.78 Aligned_cols=210 Identities=18% Similarity=0.160 Sum_probs=113.1
Q ss_pred CCcEEEEEcCCCCCCCCccchHHHHHHHHCC-----cEEEEECCCCCCCCchh----hhhc-------CCCCCCcchHHH
Q 003363 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG-----YSLLIVNYRGSLGFGEE----ALQS-------LPGKVGSQDVND 654 (826)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G-----~~Vl~~d~rG~~g~G~~----~~~~-------~~~~~~~~~~~D 654 (826)
..| .||+||..+. ...+..++..|...+ -.++.+|--|+-..-.. .... .....+.....=
T Consensus 45 ~iP-TIfIhGsgG~--asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w 121 (288)
T COG4814 45 AIP-TIFIHGSGGT--ASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW 121 (288)
T ss_pred ccc-eEEEecCCCC--hhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence 455 6789996655 345556666665544 45677776664221111 1000 000111111334
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC-----ceeEEEecCCccchhhhccCCCCCCchhhhhccCc
Q 003363 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 729 (826)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (826)
+..++.+|.++.. -.++-++||||||.....++..+.+ .++..|.+++.++.....+.....+. ...
T Consensus 122 lk~~msyL~~~Y~--i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v------~~~ 193 (288)
T COG4814 122 LKKAMSYLQKHYN--IPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDV------LKD 193 (288)
T ss_pred HHHHHHHHHHhcC--CceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchhee------ecc
Confidence 5667778888854 4689999999999999888876532 35555655555442111111111000 000
Q ss_pred CCccCCCCCChhhHHHHhhcCcccccCCC--CCcEEEEEeCCCC------CCCcHHHHHHHHHHHhCCCCEEEEEeCCC-
Q 003363 730 GKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDL------RVPVSNGLQYARALREKGVETKVIVFPND- 800 (826)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~PvLii~G~~D~------~vp~~~~~~~~~~l~~~g~~~~~~~~p~~- 800 (826)
... ....+. ..|+.. ....+ ++-+|+|.|+.|. .||...+...+..+...+..+.-.+|+|.
T Consensus 194 ~~~-~~~t~y----~~y~~~----n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~ 264 (288)
T COG4814 194 GPG-LIKTPY----YDYIAK----NYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKD 264 (288)
T ss_pred Ccc-ccCcHH----HHHHHh----cceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCc
Confidence 000 001111 111111 11112 3669999998764 58888888898888888777776677764
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHH
Q 003363 801 -VHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 801 -~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
.|.-..+ +. .+...+..||-
T Consensus 265 a~Hs~lhe-n~-~v~~yv~~FLw 285 (288)
T COG4814 265 ARHSKLHE-NP-TVAKYVKNFLW 285 (288)
T ss_pred chhhccCC-Ch-hHHHHHHHHhh
Confidence 5765433 32 45566666664
No 314
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.59 E-value=0.0095 Score=66.24 Aligned_cols=322 Identities=11% Similarity=0.044 Sum_probs=161.3
Q ss_pred ccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCc
Q 003363 123 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTV 200 (826)
Q Consensus 123 ~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~ 200 (826)
+.....+..|++.........++.. .+.+....+++||..++++.++. +..+|+ ..+..++..+-+..
T Consensus 167 g~~D~~v~vwnl~~~~tcl~~~~~H-----~S~vtsL~~~~d~~~~ls~~RDk-----vi~vwd~~~~~~l~~lp~ye~~ 236 (775)
T KOG0319|consen 167 GATDGTVRVWNLNDKRTCLHTMILH-----KSAVTSLAFSEDSLELLSVGRDK-----VIIVWDLVQYKKLKTLPLYESL 236 (775)
T ss_pred cCCCceEEEEEcccCchHHHHHHhh-----hhheeeeeeccCCceEEEeccCc-----EEEEeehhhhhhhheechhhhe
Confidence 3445566666654332211111112 25688999999999999886554 888884 33444444444455
Q ss_pred cccccCCCcccceeecCC-----CCeEEEEeecCCCCCCCccCCCCCCCCC--CccCCCCCCcceeecCCCccCCCccCc
Q 003363 201 HGSVYADGWFEGISWNSD-----ETLIAYVAEEPSPSKPTFSLGSTKGGSS--DKDCNSWKGQGDWEEDWGETYAGKRQP 273 (826)
Q Consensus 201 ~g~v~~~~~~~~~~wSPD-----g~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~g~~~~~~~~~ 273 (826)
. +...-++ |.++..+.+..... .|+....+.... ..+... ......-+.-+..+.-....
T Consensus 237 E----------~vv~l~~~~~~~~~~~~TaG~~g~~~--~~d~es~~~~~~~~~~~~~e-~~~~~~~~~~~~~l~vtaeQ 303 (775)
T KOG0319|consen 237 E----------SVVRLREELGGKGEYIITAGGSGVVQ--YWDSESGKCVYKQRQSDSEE-IDHLLAIESMSQLLLVTAEQ 303 (775)
T ss_pred e----------eEEEechhcCCcceEEEEecCCceEE--EEecccchhhhhhccCCchh-hhcceeccccCceEEEEccc
Confidence 3 3333333 34444444443322 222111111100 000000 11111111112222233457
Q ss_pred eEEEEEccCCceE-eccCCCCCCccceEE-EeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 274 SLFVININSGEVQ-AVKGIPKSLSVGQVV-WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 274 ~l~v~d~~~g~~~-~l~~~~~~~~~~~~~-wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
+|+++|.++.++. ++ ...+..+.++. |-|+.+. ++..++.. .|.++++
T Consensus 304 nl~l~d~~~l~i~k~i--vG~ndEI~Dm~~lG~e~~~----laVATNs~---------------~lr~y~~--------- 353 (775)
T KOG0319|consen 304 NLFLYDEDELTIVKQI--VGYNDEILDMKFLGPEESH----LAVATNSP---------------ELRLYTL--------- 353 (775)
T ss_pred eEEEEEccccEEehhh--cCCchhheeeeecCCccce----EEEEeCCC---------------ceEEEec---------
Confidence 8999998888754 34 22233455665 6677776 77766432 4555566
Q ss_pred hhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEe---------------------
Q 003363 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID--------------------- 410 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d--------------------- 410 (826)
.+....-+..+...+.+.....+|-.|+-.+.+. ...||++|
T Consensus 354 --------~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~---------svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 354 --------PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDK---------SVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred --------CCCceEEEeCchhheeeeeecccCcEEEEecCCc---------eEEEEEecCCcchhhhhhhhcccccccce
Confidence 5555666666665555555445554444333221 23344441
Q ss_pred --CCCCCC-CCcccceeeeeeeeeccCC--CCCcc---------cccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003363 411 --WPTNGN-FSSLEKIVDVIPVVQCAEG--DCFPG---------LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (826)
Q Consensus 411 --~~~~~~-~~~~~~~~~~~~~~~~~~~--~~f~g---------~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~ 476 (826)
...++. ..++.+.+..+++|..+.+ ..++- .++-.++.++.+|+.+ |+.+.+.+....||.++
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le-- 493 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLE-- 493 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeeccc--
Confidence 111111 1222333446777776652 23332 2334567888999987 77777777788888776
Q ss_pred CCcEEEecCCC-CCeeeEEEeecCCEEEEEEeCCCCCCeEEEEe
Q 003363 477 SGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 477 tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~ 519 (826)
.+.+.-...++ ..+....|++... +++++++..+ -.||-++
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~T-vKIW~is 535 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKT-VKIWSIS 535 (775)
T ss_pred CceEEEEeeCCccceEEEEeccccc-eeEeccCCce-EEEEEec
Confidence 44444333333 3444456776544 5555554433 4466544
No 315
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.58 E-value=0.00081 Score=75.17 Aligned_cols=131 Identities=16% Similarity=0.166 Sum_probs=79.5
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccch----------------HHHHHHHHCCcEEEEECC-CCCCCC
Q 003363 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS----------------KSLAFLSSVGYSLLIVNY-RGSLGF 635 (826)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~----------------~~~~~la~~G~~Vl~~d~-rG~~g~ 635 (826)
+..+..|++...+ .....|+||+++|||+........ .....+.+. ..++.+|. +|. |+
T Consensus 60 ~~~lFyw~~~s~~--~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l~iDqP~G~-G~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRN--GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNE-AYVIYVDQPAGV-GF 135 (462)
T ss_pred CceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccc-cCeEEEeCCCCc-Cc
Confidence 4568888887663 456789999999999875321000 000012222 46777785 563 34
Q ss_pred chhhhhcCCCCCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEEecchHHHHHHHHHhC----------CCceeEEEecCC
Q 003363 636 GEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQA----------PDKFVAAAARNP 704 (826)
Q Consensus 636 G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~a~~~----------p~~~~a~v~~~p 704 (826)
+........ ..-....+|+..+++.+.++ +.....++.|+|+||||..+..++.+- .-.++++++.+|
T Consensus 136 S~~~~~~~~-~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 136 SYADKADYD-HNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred ccCCCCCCC-CChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 332111111 11122367777777766553 444568899999999999887776542 114789999999
Q ss_pred ccch
Q 003363 705 LCNL 708 (826)
Q Consensus 705 ~~~~ 708 (826)
+++.
T Consensus 215 ~~dp 218 (462)
T PTZ00472 215 LTDP 218 (462)
T ss_pred ccCh
Confidence 8765
No 316
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.56 E-value=0.005 Score=63.42 Aligned_cols=225 Identities=14% Similarity=0.148 Sum_probs=127.5
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCC-eEEEEeecCCCCCCCccCC
Q 003363 163 PSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEEPSPSKPTFSLG 239 (826)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~-~ia~~~~~~~~~~~~~~~~ 239 (826)
-+.++||++-+..+|.. +.+|. ..|+.-.-..+-.+..+.| ..+.|.|-.. .||..+++
T Consensus 42 vNPkfiAvi~easgGga-f~ViPl~k~Gr~d~~~P~v~GHt~~v------LDi~w~PfnD~vIASgSeD----------- 103 (472)
T KOG0303|consen 42 VNPKFVAVIIEASGGGA-FLVIPLVKTGRMDASYPLVCGHTAPV------LDIDWCPFNDCVIASGSED----------- 103 (472)
T ss_pred cCCceEEEEEecCCCcc-eeecccccccccCCCCCCccCccccc------cccccCccCCceeecCCCC-----------
Confidence 36688888876653322 33343 3343333222233444555 7889999654 44444333
Q ss_pred CCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc-CCce-------EeccCCCCCCccceEEEeeCCCCCcc
Q 003363 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEV-------QAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~g~~-------~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
..|.+|.+- .|.. ..| ....-.++.+.|.|-...
T Consensus 104 ---------------------------------~~v~vW~IPe~~l~~~ltepvv~L--~gH~rrVg~V~wHPtA~N--- 145 (472)
T KOG0303|consen 104 ---------------------------------TKVMVWQIPENGLTRDLTEPVVEL--YGHQRRVGLVQWHPTAPN--- 145 (472)
T ss_pred ---------------------------------ceEEEEECCCcccccCcccceEEE--eecceeEEEEeecccchh---
Confidence 455666543 2322 223 223346788999998887
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEe
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
+.+++- .++.+..+++ .+|+ ...|. +..-+.+..|+-||.+|+-..
T Consensus 146 -VLlsag--------------~Dn~v~iWnv-----------------~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttc 192 (472)
T KOG0303|consen 146 -VLLSAG--------------SDNTVSIWNV-----------------GTGEALITLD-HPDMVYSMSFNRDGSLLCTTC 192 (472)
T ss_pred -hHhhcc--------------CCceEEEEec-----------------cCCceeeecC-CCCeEEEEEeccCCceeeeec
Confidence 777651 2347889998 6665 34555 777789999999999998666
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEE--eCCeE
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI--WGSSQ 468 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~--~~~~~ 468 (826)
.+ ..|.+||..+++....-. ...+ ....+..|..||+ | +++. ..+..
T Consensus 193 kD-----------KkvRv~dpr~~~~v~e~~-----------~heG-------~k~~Raifl~~g~-i-~tTGfsr~seR 241 (472)
T KOG0303|consen 193 KD-----------KKVRVIDPRRGTVVSEGV-----------AHEG-------AKPARAIFLASGK-I-FTTGFSRMSER 241 (472)
T ss_pred cc-----------ceeEEEcCCCCcEeeecc-----------cccC-------CCcceeEEeccCc-e-eeecccccccc
Confidence 54 358999987765421110 0011 1223667899997 4 4443 23455
Q ss_pred EEEEEECCC----CcEEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 469 VIISVNVSS----GELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 469 ~l~~vdl~t----g~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
++-++|... +-.+.|-.+.+ +-.+.+++|.+.+|.+.-+
T Consensus 242 q~aLwdp~nl~eP~~~~elDtSnG-vl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 242 QIALWDPNNLEEPIALQELDTSNG-VLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred ceeccCcccccCcceeEEeccCCc-eEEeeecCCCCEEEEEecC
Confidence 566666432 12223322322 3445566666655555443
No 317
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0011 Score=68.70 Aligned_cols=170 Identities=18% Similarity=0.070 Sum_probs=92.5
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|.+|+...-... +.....+..+.+..|||||+. |++.+.+ ...+++..
T Consensus 166 g~lRv~~~Ps~~t~-l~e~~~~~eV~DL~FS~dgk~----lasig~d----------------~~~VW~~~--------- 215 (398)
T KOG0771|consen 166 GTLRVWEWPSMLTI-LEEIAHHAEVKDLDFSPDGKF----LASIGAD----------------SARVWSVN--------- 215 (398)
T ss_pred ceEEEEecCcchhh-hhhHhhcCccccceeCCCCcE----EEEecCC----------------ceEEEEec---------
Confidence 45666773322211 111445557889999999999 9998821 34445541
Q ss_pred hhhcCCCCCCcceecCCC--CccccCceecCCC---CEEEEEeccCCCCCCCCcccceEEEEeCCCC-CCCCcccceeee
Q 003363 353 ELKESSSEDLPVVNLTES--ISSAFFPRFSPDG---KFLVFLSAKSSVDSGAHSATDSLHRIDWPTN-GNFSSLEKIVDV 426 (826)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG---~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~-~~~~~~~~~~~~ 426 (826)
++....++++. .......+|+-|+ ..+++....+ +..-...++..|++..- ..++...
T Consensus 216 -------~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~----~~~v~~~~~~~w~~~~~l~~~~~~~----- 279 (398)
T KOG0771|consen 216 -------TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFP----GGGVRLCDISLWSGSNFLRLRKKIK----- 279 (398)
T ss_pred -------cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCC----CCceeEEEeeeeccccccchhhhhh-----
Confidence 33345556633 3346788999888 4445555443 21112233444443210 0011110
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CeeeEEEeecCCEEEE
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIA 504 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~--~~~~~~~s~dg~~l~~ 504 (826)
.+ .++..+..|+||+.+.+.+. +|...| ++..+-+..++.+... .+....|+||.+.+.-
T Consensus 280 ----------~~-----~siSsl~VS~dGkf~AlGT~-dGsVai--~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 280 ----------RF-----KSISSLAVSDDGKFLALGTM-DGSVAI--YDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred ----------cc-----CcceeEEEcCCCcEEEEecc-CCcEEE--EEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 11 14567788999997776654 444444 4555555555555443 4455678998887665
Q ss_pred EE
Q 003363 505 VS 506 (826)
Q Consensus 505 ~~ 506 (826)
++
T Consensus 342 vS 343 (398)
T KOG0771|consen 342 VS 343 (398)
T ss_pred cc
Confidence 33
No 318
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=97.56 E-value=0.00082 Score=68.92 Aligned_cols=111 Identities=15% Similarity=0.192 Sum_probs=74.7
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCc-c----chHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-S----YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~----~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~ 646 (826)
|+..+.+..+.=+ ..++..-||+.-|.+...... . .........+.|..|+++||||-+.+-. +..
T Consensus 120 D~~~IDt~~I~~~---~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G------~~s 190 (365)
T PF05677_consen 120 DGVKIDTMAIHQP---EAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTG------PPS 190 (365)
T ss_pred CCEEEEEEEeeCC---CCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCC------CCC
Confidence 6778888776522 235567788887744332111 1 1234445567899999999999543211 111
Q ss_pred CCcchHHHHHHHHHHHHHcC-CCCCCcEEEEEecchHHHHHHHHHhC
Q 003363 647 VGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQA 692 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~-~~d~~rv~l~G~S~GG~~a~~~a~~~ 692 (826)
...-+.|..+.++||.++. .+.+++|.+.|||.||.+++.++.++
T Consensus 191 -~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 191 -RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred -HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 1234788999999999853 47889999999999999998876654
No 319
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.53 E-value=0.0021 Score=72.35 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=60.2
Q ss_pred eeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCce
Q 003363 258 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (826)
Q Consensus 258 ~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l 337 (826)
.|+.+ +-+++...+..+.+|++...+.-.+ ....-.++.++|.|-... |++-.+ -++.+
T Consensus 376 SWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~--F~HndfVTcVaFnPvDDr---yFiSGS---------------LD~Kv 434 (712)
T KOG0283|consen 376 SWSKN-NFLLSSSMDKTVRLWHPGRKECLKV--FSHNDFVTCVAFNPVDDR---YFISGS---------------LDGKV 434 (712)
T ss_pred ccccC-CeeEeccccccEEeecCCCcceeeE--EecCCeeEEEEecccCCC---cEeecc---------------cccce
Confidence 35544 4445555677888888887766555 455567899999995554 033333 22355
Q ss_pred EEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 338 YAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 338 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
.++++ ...++.--++-..-++...|+|||+..+..+..
T Consensus 435 RiWsI-----------------~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 435 RLWSI-----------------SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred EEeec-----------------CcCeeEeehhhhhhheeEEeccCCceEEEEEec
Confidence 55665 233333333334557889999999987766654
No 320
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.0042 Score=62.13 Aligned_cols=187 Identities=12% Similarity=0.117 Sum_probs=105.9
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
....||+-|..||.... ++.+.+||..|-.+-++.
T Consensus 27 ~~~~Fs~~G~~lAvGc~--------------------------------------------nG~vvI~D~~T~~iar~l- 61 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCA--------------------------------------------NGRVVIYDFDTFRIARML- 61 (405)
T ss_pred ceEEeccCcceeeeecc--------------------------------------------CCcEEEEEccccchhhhh-
Confidence 58899999999998644 356888998887655441
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
...-..+.+++||+||+. |+-.+ ++..+-.+|+- .+....++.-
T Consensus 62 saH~~pi~sl~WS~dgr~----LltsS---------------~D~si~lwDl~----------------~gs~l~rirf- 105 (405)
T KOG1273|consen 62 SAHVRPITSLCWSRDGRK----LLTSS---------------RDWSIKLWDLL----------------KGSPLKRIRF- 105 (405)
T ss_pred hccccceeEEEecCCCCE----eeeec---------------CCceeEEEecc----------------CCCceeEEEc-
Confidence 333447789999999998 87766 44567788872 2223333321
Q ss_pred CccccCceecCCCCEEEEEe-ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCC
Q 003363 371 ISSAFFPRFSPDGKFLVFLS-AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~l~f~s-~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 449 (826)
...+....|.|-.+..+... .+. +-+++++.....+.+..+.+ ++.. ......
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~-----------sp~vi~~s~~~h~~Lp~d~d-----------~dln----~sas~~ 159 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEE-----------SPVVIDFSDPKHSVLPKDDD-----------GDLN----SSASHG 159 (405)
T ss_pred cCccceeeeccccCCeEEEEEecC-----------CcEEEEecCCceeeccCCCc-----------cccc----cccccc
Confidence 22355566776544333332 221 12344444322222222221 1110 011223
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCCCcEE---EecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 450 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELL---RITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~---~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
.|.+-|++|+..+ +...|..+|..|-+.. +++.. ..+-...++..|..+++..++
T Consensus 160 ~fdr~g~yIitGt---sKGkllv~~a~t~e~vas~rits~-~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 160 VFDRRGKYIITGT---SKGKLLVYDAETLECVASFRITSV-QAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred cccCCCCEEEEec---CcceEEEEecchheeeeeeeechh-eeeeEEEEeccCcEEEEecCC
Confidence 5788899887543 3445666676665433 33331 224455788888877776654
No 321
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.53 E-value=0.0028 Score=71.17 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=67.0
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
....|.++|..+.++.+.. ......+.+++||||||+ |+..+ .++.|..+|+
T Consensus 554 ddf~I~vvD~~t~kvvR~f-~gh~nritd~~FS~DgrW----lisas---------------mD~tIr~wDl-------- 605 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREF-WGHGNRITDMTFSPDGRW----LISAS---------------MDSTIRTWDL-------- 605 (910)
T ss_pred CceeEEEEEchhhhhhHHh-hccccceeeeEeCCCCcE----EEEee---------------cCCcEEEEec--------
Confidence 4578999999887765542 223446789999999999 98887 4458999999
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEe
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d 410 (826)
.++....-..-...+.+.+|||.|.+||....+. ..||+|.
T Consensus 606 ---------pt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~----------~gIylWs 646 (910)
T KOG1539|consen 606 ---------PTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQ----------NGIYLWS 646 (910)
T ss_pred ---------cCcceeeeEecCCcceeeEECCCCCEEEEEEecC----------ceEEEEE
Confidence 4444332222334578899999999999777653 4588883
No 322
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.53 E-value=0.0001 Score=78.21 Aligned_cols=114 Identities=15% Similarity=0.194 Sum_probs=63.2
Q ss_pred CCCCcEEEEEcCCCCCCCCccc-hHHHHHH-HH--CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSY-SKSLAFL-SS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~-~~~~~~l-a~--~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (826)
+...|++|++||.........| ......+ .. ..+.|+++|+...... ....+. ..-......+...+..|.+
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~--~n~~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAV--ANTRLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc--cccchh--hhHHHHHHHHHHHHHHHHh
Confidence 4578999999996655422233 3344444 34 5899999998631100 000000 0000112345556777775
Q ss_pred cCCCCCCcEEEEEecchHHHHHHHHHhCCC--ceeEEEecCCcc
Q 003363 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLC 706 (826)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p~~ 706 (826)
...++.++|.|+|||+||+++..+...... ++..+....|.-
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 555889999999999999999988877666 777787777653
No 323
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.52 E-value=0.027 Score=56.28 Aligned_cols=110 Identities=23% Similarity=0.317 Sum_probs=72.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
.++..+|||.-..++. ...-++..++|++.+.|.... .......|.| ..+.||-||.+++..+-+
T Consensus 29 sIS~l~FSP~~~~~~~-A~SWD~tVR~wevq~~g~~~~--ka~~~~~~Pv------L~v~WsddgskVf~g~~D------ 93 (347)
T KOG0647|consen 29 SISALAFSPQADNLLA-AGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPV------LDVCWSDDGSKVFSGGCD------ 93 (347)
T ss_pred chheeEeccccCceEE-ecccCCceEEEEEecCCcccc--hhhhccCCCe------EEEEEccCCceEEeeccC------
Confidence 4889999995444443 333346666777765443332 1111222333 799999999877665333
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
.++-+||+.++++.++ -..+..+....|-+-..+ ++|+
T Consensus 94 --------------------------------------k~~k~wDL~S~Q~~~v--~~Hd~pvkt~~wv~~~~~--~cl~ 131 (347)
T KOG0647|consen 94 --------------------------------------KQAKLWDLASGQVSQV--AAHDAPVKTCHWVPGMNY--QCLV 131 (347)
T ss_pred --------------------------------------CceEEEEccCCCeeee--eecccceeEEEEecCCCc--ceeE
Confidence 4688899999999998 566677888889887663 4467
Q ss_pred EEeecCc
Q 003363 315 FVGWSSE 321 (826)
Q Consensus 315 f~~~~~~ 321 (826)
-.+|+..
T Consensus 132 TGSWDKT 138 (347)
T KOG0647|consen 132 TGSWDKT 138 (347)
T ss_pred ecccccc
Confidence 7777654
No 324
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.49 E-value=0.037 Score=58.00 Aligned_cols=208 Identities=14% Similarity=0.160 Sum_probs=125.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..+..+.++|+-..++..+.+. .+.+|. +....+..- ....+.| ..++-.|.|++++..+.++.
T Consensus 262 kki~~v~~~~~~~~v~~aSad~-----~i~vws~~~~s~~~~~--~~h~~~V------~~ls~h~tgeYllsAs~d~~-- 326 (506)
T KOG0289|consen 262 KKITSVKFHKDLDTVITASADE-----IIRVWSVPLSSEPTSS--RPHEEPV------TGLSLHPTGEYLLSASNDGT-- 326 (506)
T ss_pred eEEEEEEeccchhheeecCCcc-----eEEeeccccccCcccc--ccccccc------eeeeeccCCcEEEEecCCce--
Confidence 3477889999988877654443 678882 222221111 1112222 78889999999988776541
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
...-|+.+|. ...+.....+......+|.|||-
T Consensus 327 ------------------------------------------w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL---- 360 (506)
T KOG0289|consen 327 ------------------------------------------WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL---- 360 (506)
T ss_pred ------------------------------------------EEEEEccCCcEEEEEeeccccceeEEeeEcCCce----
Confidence 1122334433 22221011234566889999987
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
| |.... .++.|-++|+. ......+...+.+.+....||.+|=+|+....
T Consensus 361 -i-fgtgt-------------~d~~vkiwdlk----------------s~~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 361 -I-FGTGT-------------PDGVVKIWDLK----------------SQTNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred -E-EeccC-------------CCceEEEEEcC----------------CccccccCCCCCCceeEEEeccCceEEEEEec
Confidence 3 43311 23467788883 22345666677888999999999999987775
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (826)
+. .+.+||+....... .+..+. + ..+..+.|...|++|... +....+|
T Consensus 410 d~-----------~V~lwDLRKl~n~k----------t~~l~~---~-----~~v~s~~fD~SGt~L~~~---g~~l~Vy 457 (506)
T KOG0289|consen 410 DG-----------SVKLWDLRKLKNFK----------TIQLDE---K-----KEVNSLSFDQSGTYLGIA---GSDLQVY 457 (506)
T ss_pred CC-----------eEEEEEehhhcccc----------eeeccc---c-----ccceeEEEcCCCCeEEee---cceeEEE
Confidence 52 38899987643211 000000 0 024467788889877665 6677899
Q ss_pred EEECCCCcEEEecC
Q 003363 472 SVNVSSGELLRITP 485 (826)
Q Consensus 472 ~vdl~tg~~~~lt~ 485 (826)
.++-.+++.+.+..
T Consensus 458 ~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKE 471 (506)
T ss_pred EEecccccceeeeh
Confidence 99877877776643
No 325
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.49 E-value=0.011 Score=62.03 Aligned_cols=152 Identities=15% Similarity=0.114 Sum_probs=97.4
Q ss_pred ceEEEEEccCC--ceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 273 PSLFVININSG--EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 273 ~~l~v~d~~~g--~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
..|.+||+.++ ++... .......+..+.|+|-+.. |+-++. -+..|.++|+..
T Consensus 250 ~~L~iwD~R~~~~~~~~~-~~ah~~~vn~~~fnp~~~~----ilAT~S--------------~D~tV~LwDlRn------ 304 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHS-VKAHSAEVNCVAFNPFNEF----ILATGS--------------ADKTVALWDLRN------ 304 (422)
T ss_pred CeEEEEEcCCCCCCCccc-ccccCCceeEEEeCCCCCc----eEEecc--------------CCCcEEEeechh------
Confidence 67999998853 33222 1233456778999998887 776652 234788888832
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccce-eeeeee
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI-VDVIPV 429 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~ 429 (826)
-......+..+...+....|||+-..++-.+..+ ..|.+||+..=+..+..... +....+
T Consensus 305 ---------L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D----------~rl~vWDls~ig~eq~~eda~dgppEl 365 (422)
T KOG0264|consen 305 ---------LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD----------RRLNVWDLSRIGEEQSPEDAEDGPPEL 365 (422)
T ss_pred ---------cccCceeccCCCcceEEEEeCCCCCceeEecccC----------CcEEEEeccccccccChhhhccCCcce
Confidence 2234566677778899999999998877666433 56889998753332221111 111110
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
.- ..|.+...+..+.|.|+.-+++.+...++..+||.+.
T Consensus 366 lF------~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 366 LF------IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eE------EecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 00 0112334577899999999999988888888888764
No 326
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.49 E-value=0.00034 Score=69.10 Aligned_cols=89 Identities=25% Similarity=0.459 Sum_probs=54.0
Q ss_pred EEEEcCCCCCCCCccchHHHHHHHHCCcE---EEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 595 vv~~HGg~~~~~~~~~~~~~~~la~~G~~---Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
||++||.... ....|......|.++||. |++++|-.... ........ .....+.++.+.|+.+++. ...
T Consensus 4 VVlVHG~~~~-~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~--~~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa- 75 (219)
T PF01674_consen 4 VVLVHGTGGN-AYSNWSTLAPYLKAAGYCDSEVYALTYGSGNG--SPSVQNAH--MSCESAKQLRAFIDAVLAY--TGA- 75 (219)
T ss_dssp EEEE--TTTT-TCGGCCHHHHHHHHTT--CCCEEEE--S-CCH--HTHHHHHH--B-HHHHHHHHHHHHHHHHH--HT--
T ss_pred EEEECCCCcc-hhhCHHHHHHHHHHcCCCcceeEeccCCCCCC--CCcccccc--cchhhHHHHHHHHHHHHHh--hCC-
Confidence 8889996542 256788899999999999 89999854221 11111000 1112356788888888775 335
Q ss_pred cEEEEEecchHHHHHHHHHh
Q 003363 672 KVTVVGGSHGGFLTTHLIGQ 691 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~ 691 (826)
+|-|+|||+||.++.+++..
T Consensus 76 kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp -EEEEEETCHHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHHH
Confidence 99999999999999888754
No 327
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.47 E-value=0.0052 Score=65.80 Aligned_cols=74 Identities=24% Similarity=0.314 Sum_probs=49.8
Q ss_pred CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCC
Q 003363 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (826)
Q Consensus 370 ~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 449 (826)
..+.+....|||||++||.++.+. -|.++|.++.+...+... |-.++.-+
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSqDG-----------fLRvF~fdt~eLlg~mkS-------------------YFGGLLCv 338 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQDG-----------FLRIFDFDTQELLGVMKS-------------------YFGGLLCV 338 (636)
T ss_pred ccccccceeEcCCCceEEEEecCc-----------eEEEeeccHHHHHHHHHh-------------------hccceEEE
Confidence 344677889999999999999773 377888877544322111 44456677
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 450 PWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
+||||||+|+ +..++.-..+|.+.
T Consensus 339 cWSPDGKyIv-tGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 339 CWSPDGKYIV-TGGEDDLVTVWSFE 362 (636)
T ss_pred EEcCCccEEE-ecCCcceEEEEEec
Confidence 9999999765 43444455666654
No 328
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.45 E-value=0.0063 Score=64.42 Aligned_cols=230 Identities=11% Similarity=0.045 Sum_probs=131.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc--eeEEEe-cCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ--LEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~--~~~~~~-~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
..++...|-.||+.+|-.. ......+.+... ..+..+ ....+ ....|+|++..++..+.+.
T Consensus 69 ~~v~s~~fR~DG~LlaaGD-----~sG~V~vfD~k~r~iLR~~~ah~apv----------~~~~f~~~d~t~l~s~sDd- 132 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGD-----ESGHVKVFDMKSRVILRQLYAHQAPV----------HVTKFSPQDNTMLVSGSDD- 132 (487)
T ss_pred cceeEEEeecCCeEEEccC-----CcCcEEEeccccHHHHHHHhhccCce----------eEEEecccCCeEEEecCCC-
Confidence 3588899999999888632 222444443111 111111 12222 5788999998887765543
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
..+-.||+.++.+ +++-....-.+...+|+|-...
T Consensus 133 ------------------------------------------~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~h-- 167 (487)
T KOG0310|consen 133 ------------------------------------------KVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDH-- 167 (487)
T ss_pred ------------------------------------------ceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCe--
Confidence 3466788888876 4321344457778899999888
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEe
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
|++++. .+..|..+|+.. .+.....| ++...+.+..+-|.|..|+-.+
T Consensus 168 --ivvtGs--------------YDg~vrl~DtR~---------------~~~~v~el-nhg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 168 --IVVTGS--------------YDGKVRLWDTRS---------------LTSRVVEL-NHGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred --EEEecC--------------CCceEEEEEecc---------------CCceeEEe-cCCCceeeEEEcCCCCEEEEcC
Confidence 988872 223566777621 22222222 3344577888999999887433
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEE
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (826)
.+++.+||+-+|+........ +.-.+..+.+..|++.|+ ++.-++...+
T Consensus 216 ------------Gn~vkVWDl~~G~qll~~~~~------------------H~KtVTcL~l~s~~~rLl-S~sLD~~VKV 264 (487)
T KOG0310|consen 216 ------------GNSVKVWDLTTGGQLLTSMFN------------------HNKTVTCLRLASDSTRLL-SGSLDRHVKV 264 (487)
T ss_pred ------------CCeEEEEEecCCceehhhhhc------------------ccceEEEEEeecCCceEe-ecccccceEE
Confidence 367999999876653221110 001223455666887664 4455566666
Q ss_pred EEEECCCCcEE-EecCCCCCeeeEEEeecCCEEEEEEeCCC
Q 003363 471 ISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPV 510 (826)
Q Consensus 471 ~~vdl~tg~~~-~lt~~~~~~~~~~~s~dg~~l~~~~s~~~ 510 (826)
|.+ .+-++. .+.-.. .+-...+++++..+++-.++..
T Consensus 265 fd~--t~~Kvv~s~~~~~-pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 265 FDT--TNYKVVHSWKYPG-PVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred EEc--cceEEEEeeeccc-ceeeEEecCCCceEEEecccce
Confidence 652 222222 222222 2333467777777766655543
No 329
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.012 Score=64.87 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=96.6
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003363 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (826)
Q Consensus 103 ~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (826)
..||||+.|+|..-. ...++.++-.. .....+....+...-.....+++-|+.++++++.. ..++.
T Consensus 389 aiSPdg~~Ia~st~~----------~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~---~~~le 454 (691)
T KOG2048|consen 389 AISPDGNLIAISTVS----------RTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKN---IFSLE 454 (691)
T ss_pred ccCCCCCEEEEeecc----------ceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEecc---cceeE
Confidence 348999999997532 22333343322 22222223334444568889999999999998832 22345
Q ss_pred EEec-CCceeEEEec-CCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceee
Q 003363 183 ELWS-QSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (826)
Q Consensus 183 ~i~~-~~~~~~~~~~-~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (826)
++.. +.....+... ++..-+.| ..+.-||||++||-++.
T Consensus 455 ~~el~~ps~kel~~~~~~~~~~~I------~~l~~SsdG~yiaa~~t--------------------------------- 495 (691)
T KOG2048|consen 455 EFELETPSFKELKSIQSQAKCPSI------SRLVVSSDGNYIAAIST--------------------------------- 495 (691)
T ss_pred EEEecCcchhhhhccccccCCCcc------eeEEEcCCCCEEEEEec---------------------------------
Confidence 5552 2222222222 12222223 78899999999998752
Q ss_pred cCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEE
Q 003363 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (826)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (826)
...|+++++++++.+.+.. .-+..+..++++|..+.. |+... .++++|.+
T Consensus 496 -----------~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~---lvvat---------------s~nQv~ef 545 (691)
T KOG2048|consen 496 -----------RGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNR---LVVAT---------------SNNQVFEF 545 (691)
T ss_pred -----------cceEEEEEcccceeecchh-ccCcceeeeeccccccCc---EEEEe---------------cCCeEEEE
Confidence 3689999999999887731 223677888999766552 55543 23489999
Q ss_pred Ec
Q 003363 341 RV 342 (826)
Q Consensus 341 d~ 342 (826)
|+
T Consensus 546 di 547 (691)
T KOG2048|consen 546 DI 547 (691)
T ss_pred ec
Confidence 88
No 330
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.42 E-value=0.0005 Score=69.74 Aligned_cols=138 Identities=14% Similarity=0.203 Sum_probs=84.2
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
.+..|+++|...+.+..- .--...-..++|+| .. ..|++ .+.+..||.+|..
T Consensus 208 sDrsIvLyD~R~~~Pl~K--Vi~~mRTN~IswnP--ea----fnF~~-------------a~ED~nlY~~DmR------- 259 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKK--VILTMRTNTICWNP--EA----FNFVA-------------ANEDHNLYTYDMR------- 259 (433)
T ss_pred cCCceEEEecccCCccce--eeeeccccceecCc--cc----cceee-------------ccccccceehhhh-------
Confidence 357899999887764321 11123445789999 44 55765 2355689999973
Q ss_pred hhhhhcCCCCCCcceecC-CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeee
Q 003363 351 ELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 429 (826)
.-.....+. ++...+.+..|||-|+.++-.|-+. .|.++....+..+.+--.. .+
T Consensus 260 ---------~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk-----------sIRIf~~~~~~SRdiYhtk-RM--- 315 (433)
T KOG0268|consen 260 ---------NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK-----------SIRIFPVNHGHSRDIYHTK-RM--- 315 (433)
T ss_pred ---------hhcccchhhcccceeEEEeccCCCcchhccccccc-----------eEEEeecCCCcchhhhhHh-hh---
Confidence 111222222 3344578899999999988766553 4666665554433221111 00
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
..+..+.||.|+++| ++.+.+++.+||.-+.
T Consensus 316 --------------q~V~~Vk~S~Dskyi-~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 316 --------------QHVFCVKYSMDSKYI-ISGSDDGNVRLWKAKA 346 (433)
T ss_pred --------------heeeEEEEeccccEE-EecCCCcceeeeecch
Confidence 133466799999855 6667778888998664
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.40 E-value=0.06 Score=56.07 Aligned_cols=133 Identities=15% Similarity=0.133 Sum_probs=70.3
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcce-----ec-CC
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-----NL-TE 369 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~L-t~ 369 (826)
-...++++.++.+ ++|.+ ....||.+|+. +...+ .+ +.
T Consensus 185 ~f~~~~~~~~~~~----~~F~S---------------y~G~v~~~dls-----------------g~~~~~~~~~~~~t~ 228 (342)
T PF06433_consen 185 LFEHPAYSRDGGR----LYFVS---------------YEGNVYSADLS-----------------GDSAKFGKPWSLLTD 228 (342)
T ss_dssp B-S--EEETTTTE----EEEEB---------------TTSEEEEEEET-----------------TSSEEEEEEEESS-H
T ss_pred cccccceECCCCe----EEEEe---------------cCCEEEEEecc-----------------CCcccccCcccccCc
Confidence 3446778877777 88987 33479999883 22221 11 11
Q ss_pred -----C--CccccCceecCCCCEEEEEeccCCCCCCCCccc-ceEEEEeCCCCCCCC-cccceeeeeeeeeccCCCCCcc
Q 003363 370 -----S--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT-DSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPG 440 (826)
Q Consensus 370 -----~--~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~-~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~g 440 (826)
+ .+...-.++.+..++|+.+-.+.. .|.|... ..||++|+.+++... +....
T Consensus 229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~--~gsHKdpgteVWv~D~~t~krv~Ri~l~~----------------- 289 (342)
T PF06433_consen 229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGG--EGSHKDPGTEVWVYDLKTHKRVARIPLEH----------------- 289 (342)
T ss_dssp HHHHTTEEE-SSS-EEEETTTTEEEEEEEE----TT-TTS-EEEEEEEETTTTEEEEEEEEEE-----------------
T ss_pred cccccCcCCcceeeeeeccccCeEEEEecCCC--CCCccCCceEEEEEECCCCeEEEEEeCCC-----------------
Confidence 1 112334567777776665544332 2444433 489999999876532 21111
Q ss_pred cccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003363 441 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (826)
Q Consensus 441 ~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~ 488 (826)
...++..+.|.+-+++..+ .+...|+.+|..+|+..+-...-+
T Consensus 290 ----~~~Si~Vsqd~~P~L~~~~-~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 290 ----PIDSIAVSQDDKPLLYALS-AGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp ----EESEEEEESSSS-EEEEEE-TTTTEEEEEETTT--EEEEE---S
T ss_pred ----ccceEEEccCCCcEEEEEc-CCCCeEEEEeCcCCcEEeehhccC
Confidence 0124456778886766544 345678889999998877655444
No 332
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.39 E-value=0.00022 Score=49.33 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=28.1
Q ss_pred eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEE
Q 003363 365 VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 408 (826)
Q Consensus 365 ~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~ 408 (826)
++++...+....|.|||||++|+|.+.+.. .+..+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~------~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRND------RGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--------SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCC------CCCcCEEC
Confidence 567777788899999999999999998862 24466764
No 333
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.39 E-value=0.017 Score=60.92 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=51.6
Q ss_pred ccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 402 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
....|++|++..............+.+.. +...+ ...+..++-.|.. -|+.+.+++|..+||.+.-.-..+.
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~-----~~~~~--~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPEL-----DPVNG--NFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCc-----ccccc--ccceeeeEecccC-ceEEecCCCCceEEEEecCCccccc
Confidence 44678999887765543322222222210 00000 0122334445544 4778888899999999874433444
Q ss_pred EecCC--CCCeeeEEEeecCCEEEEEE
Q 003363 482 RITPA--ESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 482 ~lt~~--~~~~~~~~~s~dg~~l~~~~ 506 (826)
.|..- .+-+....|+.+|+.+++..
T Consensus 418 ~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 418 LLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred eeeecccccEEEEEEEccCCCEEEEec
Confidence 44332 22344456788888666553
No 334
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.37 E-value=0.0062 Score=61.18 Aligned_cols=207 Identities=15% Similarity=0.173 Sum_probs=107.4
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcee--EEEecCC-----Cc-cccccCCCcccce-eecCCCCeEEEEee
Q 003363 158 AVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLE--KEFHVPQ-----TV-HGSVYADGWFEGI-SWNSDETLIAYVAE 227 (826)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~--~~~~~~~-----~~-~g~v~~~~~~~~~-~wSPDg~~ia~~~~ 227 (826)
.-.|||||.-|+..+..+ .-.+|.+. +..... ....... .+ .+-||.--|+... +--|+....|..+.
T Consensus 54 gckWSPDGSciL~~sedn--~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDN--CLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred cceeCCCCceEEeecccC--eeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 358999999998776543 33445554 211110 0000000 00 1122222233211 12355555544443
Q ss_pred cCCCCCCCccCCCCCCCCCCcc--CCC-C--CCcceeecCCCccCCCccCceEEEEEc-cCCceEec-c-CCC---C-CC
Q 003363 228 EPSPSKPTFSLGSTKGGSSDKD--CNS-W--KGQGDWEEDWGETYAGKRQPSLFVINI-NSGEVQAV-K-GIP---K-SL 295 (826)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~d~g~~~~~~~~~~l~v~d~-~~g~~~~l-~-~~~---~-~~ 295 (826)
+. +...|+.-.++...+... +.. + .-...|++| |+++...-+..|.++|+ ..|.--.+ + -.. + ..
T Consensus 132 ~~--PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D-GeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQ--PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD-GEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cC--ceeeeeccccccccchhhhhhHHhhhhheeEEecCC-CCeEeecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 33 333455433433333221 111 1 124568999 56555545677899998 34432221 1 011 1 12
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 375 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~ 375 (826)
.+..++|||-.... ++..+ +.+...||..| ..+....|..+.+.++
T Consensus 209 iisc~a~sP~~~~~---~a~gs-------------Y~q~~giy~~~------------------~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 209 IISCFAFSPMDSKT---LAVGS-------------YGQRVGIYNDD------------------GRRPLQLLGGHGGGVT 254 (406)
T ss_pred eeeeeeccCCCCcc---eeeec-------------ccceeeeEecC------------------CCCceeeecccCCCee
Confidence 34578999965540 55544 22333566665 4556677777788899
Q ss_pred CceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 376 ~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
..+|-+||.+|+ ...+. ...|..||+.-
T Consensus 255 hL~~~edGn~lf-sGaRk---------~dkIl~WDiR~ 282 (406)
T KOG2919|consen 255 HLQWCEDGNKLF-SGARK---------DDKILCWDIRY 282 (406)
T ss_pred eEEeccCcCeec-ccccC---------CCeEEEEeehh
Confidence 999999999875 44332 25688998764
No 335
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.37 E-value=0.0023 Score=71.03 Aligned_cols=193 Identities=15% Similarity=0.106 Sum_probs=117.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-------CCceeEEEecCCCccccccC-CCcccceeecCCCCeEEEE
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-------QSQLEKEFHVPQTVHGSVYA-DGWFEGISWNSDETLIAYV 225 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-------~~~~~~~~~~~~~~~g~v~~-~~~~~~~~wSPDg~~ia~~ 225 (826)
+.+...+.+|||+..+..+.+. ...+|+ +|..+++..+.. ..+.. ++...+++.||||+.||..
T Consensus 455 gaIWsi~~~pD~~g~vT~saDk-----tVkfWdf~l~~~~~gt~~k~lsl~~---~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADK-----TVKFWDFKLVVSVPGTQKKVLSLKH---TRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred cceeeeeecCCCCceEEecCCc-----EEEEEeEEEEeccCcccceeeeecc---ceEEeccccEEEEEEcCCCcEEEEE
Confidence 4578899999999998875543 344441 233333222111 01111 1223899999999999986
Q ss_pred eecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeC
Q 003363 226 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305 (826)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPD 305 (826)
--+.+... |.....+.-...-+|+-.+-....++|-....++..+.++.+|-++=|....-. ...+-++..+.|-|+
T Consensus 527 LLdnTVkV--yflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 527 LLDNTVKV--YFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-FAHDDSVMSVQFLPK 603 (888)
T ss_pred eccCeEEE--EEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-hcccCceeEEEEccc
Confidence 65554332 111111111122233333344456666666677777888999988877654321 455567889999995
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCE
Q 003363 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 385 (826)
Q Consensus 306 g~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~ 385 (826)
.. +.|++- ++..+-.+|.. .-...+.|..+...+...+.+|+|.+
T Consensus 604 ~~-----~FFt~g--------------KD~kvKqWDg~----------------kFe~iq~L~~H~~ev~cLav~~~G~~ 648 (888)
T KOG0306|consen 604 TH-----LFFTCG--------------KDGKVKQWDGE----------------KFEEIQKLDGHHSEVWCLAVSPNGSF 648 (888)
T ss_pred ce-----eEEEec--------------CcceEEeechh----------------hhhhheeeccchheeeeeEEcCCCCe
Confidence 44 667762 33367778752 33456788888888889999999998
Q ss_pred EEEEecc
Q 003363 386 LVFLSAK 392 (826)
Q Consensus 386 l~f~s~~ 392 (826)
++-.+.+
T Consensus 649 vvs~shD 655 (888)
T KOG0306|consen 649 VVSSSHD 655 (888)
T ss_pred EEeccCC
Confidence 8766554
No 336
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.00027 Score=64.10 Aligned_cols=181 Identities=18% Similarity=0.217 Sum_probs=107.7
Q ss_pred CCCCCcEEEEEcCCC-CCCCCc-cchHHHHHHHHCCc-EEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH
Q 003363 588 DCSCDPLIVVLHGGP-HSVSLS-SYSKSLAFLSSVGY-SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (826)
Q Consensus 588 ~~~~~P~vv~~HGg~-~~~~~~-~~~~~~~~la~~G~-~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (826)
+....|+|||.-.++ +..... .....+..+.+.|. ..++++--- .++|... ..+ ....++--.+.-+|+++
T Consensus 23 GHaG~pVvvFpts~Grf~eyed~G~v~ala~fie~G~vQlft~~gld----sESf~a~-h~~-~adr~~rH~AyerYv~e 96 (227)
T COG4947 23 GHAGIPVVVFPTSGGRFNEYEDFGMVDALASFIEEGLVQLFTLSGLD----SESFLAT-HKN-AADRAERHRAYERYVIE 96 (227)
T ss_pred cCCCCcEEEEecCCCcchhhhhcccHHHHHHHHhcCcEEEEEecccc----hHhHhhh-cCC-HHHHHHHHHHHHHHHHH
Confidence 345678888886533 221111 11223334445664 445554322 1222111 111 01113334455678887
Q ss_pred cCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCccCCCCCChhhHH
Q 003363 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 744 (826)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (826)
+.. +.+..+-|.||||+.++.+..++|++|..+|+.+++++...+++..--.+
T Consensus 97 Eal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yyddD------------------------- 149 (227)
T COG4947 97 EAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDDD------------------------- 149 (227)
T ss_pred hhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccCc-------------------------
Confidence 742 35678899999999999999999999999999999999875543211111
Q ss_pred HHhhcCcccccCCCC----------CcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 003363 745 RFHSKSPISHISKVK----------TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 804 (826)
Q Consensus 745 ~~~~~sp~~~~~~i~----------~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 804 (826)
. ...+|..++..+. ..+.+..|..|+.. .+.+++.+.|.++.++..+.+..+..|..
T Consensus 150 v-~ynsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L--~~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 150 V-YYNSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFL--DNNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred e-eecChhhhccCCcChHHHHHHhhccEEEEecCccccc--cchHHHHHHhccccccHHHHHhccccccc
Confidence 0 1134444433332 45778889988887 45567888888887777777776666643
No 337
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.34 E-value=0.13 Score=62.49 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=43.7
Q ss_pred ccEEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEee
Q 003363 155 GASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~-~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~ 227 (826)
+....+|-.||+++|..+-... +..+.+.+| ..|......+ .+.|- -..++|.|.|..||-+..
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE---~v~gL------e~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSE---PVDGL------EGALSWRPSGNLIASSQR 276 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccc---cCCCc------cCCccCCCCCCEEEEEEE
Confidence 4556889999999998775332 346788999 4554433322 22111 168899999999998865
No 338
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=97.33 E-value=0.00047 Score=75.80 Aligned_cols=90 Identities=19% Similarity=0.230 Sum_probs=65.0
Q ss_pred CccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHH
Q 003363 607 LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 686 (826)
Q Consensus 607 ~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~ 686 (826)
...|...++.|.+.||.+ ..|++| +|.+|+.. ......++++.+.++.+.+.. ...+|.|+||||||.++.
T Consensus 107 ~~~~~~li~~L~~~GY~~-~~dL~g---~gYDwR~~---~~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~ 177 (440)
T PLN02733 107 VYYFHDMIEQLIKWGYKE-GKTLFG---FGYDFRQS---NRLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVK 177 (440)
T ss_pred HHHHHHHHHHHHHcCCcc-CCCccc---CCCCcccc---ccHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHH
Confidence 346778899999999866 789998 66666532 111223567777777776652 346899999999999999
Q ss_pred HHHHhCCCc----eeEEEecCCc
Q 003363 687 HLIGQAPDK----FVAAAARNPL 705 (826)
Q Consensus 687 ~~a~~~p~~----~~a~v~~~p~ 705 (826)
.++..+|+. ++..|++++.
T Consensus 178 ~fl~~~p~~~~k~I~~~I~la~P 200 (440)
T PLN02733 178 CFMSLHSDVFEKYVNSWIAIAAP 200 (440)
T ss_pred HHHHHCCHhHHhHhccEEEECCC
Confidence 999888863 5667766653
No 339
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.33 E-value=0.0038 Score=63.69 Aligned_cols=251 Identities=14% Similarity=0.120 Sum_probs=137.7
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCC--ceEec
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAV 288 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g--~~~~l 288 (826)
..+.+.|+.-.++..+++.+.+ .|+...+........+..-.....|...+.-..+-..+-.+.+||.++- ..+.+
T Consensus 112 t~v~~hp~~~~v~~as~d~tik--v~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~ 189 (406)
T KOG0295|consen 112 TRVIFHPSEALVVSASEDATIK--VFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL 189 (406)
T ss_pred eeeeeccCceEEEEecCCceEE--EEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh
Confidence 4566778776555555665543 3443334444444555554555556554222222333344788887653 22333
Q ss_pred cCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceec
Q 003363 289 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL 367 (826)
Q Consensus 289 ~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~L 367 (826)
...+..+..+.|-|-|.. |+..+ |+..|..+++ ++|. ..++
T Consensus 190 --~gh~h~vS~V~f~P~gd~----ilS~s---------------rD~tik~We~-----------------~tg~cv~t~ 231 (406)
T KOG0295|consen 190 --IGHEHGVSSVFFLPLGDH----ILSCS---------------RDNTIKAWEC-----------------DTGYCVKTF 231 (406)
T ss_pred --cCcccceeeEEEEecCCe----eeecc---------------cccceeEEec-----------------ccceeEEec
Confidence 445567889999999987 87766 4457888888 5665 4567
Q ss_pred CCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCC
Q 003363 368 TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (826)
Q Consensus 368 t~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 447 (826)
+.+...+...+.+-||..++--+++ .+|.+|-+.+++-+.+..+..-+++.+.-..+..++ ++.
T Consensus 232 ~~h~ewvr~v~v~~DGti~As~s~d-----------qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~-----~i~ 295 (406)
T KOG0295|consen 232 PGHSEWVRMVRVNQDGTIIASCSND-----------QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYP-----SIS 295 (406)
T ss_pred cCchHhEEEEEecCCeeEEEecCCC-----------ceEEEEEeccchhhhhhhccccceEEEEecccccCc-----chh
Confidence 7777778899999999877644433 456667666764333322322222222111111111 111
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE-ecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~-lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
...=+.||-.+++..+++....+| |+.+|...- |...+.-+....|+|.|++|+-.+ +..+ |.+.|+...
T Consensus 296 ~at~~~~~~~~l~s~SrDktIk~w--dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca-DDkt---lrvwdl~~~ 366 (406)
T KOG0295|consen 296 EATGSTNGGQVLGSGSRDKTIKIW--DVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA-DDKT---LRVWDLKNL 366 (406)
T ss_pred hccCCCCCccEEEeecccceEEEE--eccCCeEEEEEecccceeeeeEEcCCCeEEEEEe-cCCc---EEEEEeccc
Confidence 111123444566666555555555 666775432 222222355567888777655444 3333 555565544
No 340
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.0042 Score=60.34 Aligned_cols=245 Identities=12% Similarity=0.054 Sum_probs=136.4
Q ss_pred cEEEEeCCCC-CeEEEEecC-C--CCCCeEEEEe-cCCceeEEE---ecCCCccccccCCCcccceeecCCCCeEEEEee
Q 003363 156 ASAVVPSPSG-SKLLVVRNP-E--NESPIQFELW-SQSQLEKEF---HVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (826)
Q Consensus 156 ~~~~~~SPdG-~~la~~~~~-~--~~~~~~~~i~-~~~~~~~~~---~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~ 227 (826)
...+.|||== .+||..... - .|...++.+. +++...++. +...+. .+++||+.-..+++++.
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~L----------fdV~Wse~~e~~~~~a~ 80 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGL----------FDVAWSENHENQVIAAS 80 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccce----------eEeeecCCCcceEEEEe
Confidence 4556777721 244443321 1 2555677777 333333332 222233 68999999888888764
Q ss_pred cCCCCCCCccCCC-CCCCCCCccCCCCCCcceeecCCCccCC-CccCceEEEEEccCCceEeccCCCCCCccceEEEeeC
Q 003363 228 EPSPSKPTFSLGS-TKGGSSDKDCNSWKGQGDWEEDWGETYA-GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305 (826)
Q Consensus 228 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~g~~~~-~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPD 305 (826)
.... ...|+... ......+++++.-+....|.+.|++.+. ..=+..|.+|+..-++-..-. ......+-++.|||-
T Consensus 81 GDGS-Lrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~ 158 (311)
T KOG0277|consen 81 GDGS-LRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPH 158 (311)
T ss_pred cCce-EEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCC
Confidence 3321 12333111 1122334455555545555555544432 223467777776554432221 233446778999997
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCE
Q 003363 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 385 (826)
Q Consensus 306 g~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~ 385 (826)
-.. ++-.+. .++.+..+|+. ..|+...+..+...+....||.=...
T Consensus 159 ~~n----lfas~S--------------gd~~l~lwdvr----------------~~gk~~~i~ah~~Eil~cdw~ky~~~ 204 (311)
T KOG0277|consen 159 IPN----LFASAS--------------GDGTLRLWDVR----------------SPGKFMSIEAHNSEILCCDWSKYNHN 204 (311)
T ss_pred CCC----eEEEcc--------------CCceEEEEEec----------------CCCceeEEEeccceeEeecccccCCc
Confidence 665 544331 33355555653 34555556666667888999987777
Q ss_pred EEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeC
Q 003363 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (826)
Q Consensus 386 l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (826)
++.+...+ +.|+.||+..=..- +..+ .| +...+..+.|||-...|+.+++.+
T Consensus 205 vl~Tg~vd----------~~vr~wDir~~r~p--------l~eL---------~g-h~~AVRkvk~Sph~~~lLaSasYD 256 (311)
T KOG0277|consen 205 VLATGGVD----------NLVRGWDIRNLRTP--------LFEL---------NG-HGLAVRKVKFSPHHASLLASASYD 256 (311)
T ss_pred EEEecCCC----------ceEEEEehhhcccc--------ceee---------cC-CceEEEEEecCcchhhHhhhcccc
Confidence 87777554 56888887652210 0000 00 122355778999888888888777
Q ss_pred CeEEEEEEE
Q 003363 466 SSQVIISVN 474 (826)
Q Consensus 466 ~~~~l~~vd 474 (826)
...+||...
T Consensus 257 mT~riw~~~ 265 (311)
T KOG0277|consen 257 MTVRIWDPE 265 (311)
T ss_pred ceEEecccc
Confidence 888888654
No 341
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=97.31 E-value=0.01 Score=66.52 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=78.3
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH---HHHHHHHCCcEEEEECCCCCCCCc----hhhh--hcCCC
Q 003363 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFG----EEAL--QSLPG 645 (826)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vl~~d~rG~~g~G----~~~~--~~~~~ 645 (826)
.+.-.+.+|.+.+ .. ++.+=||+... ...+.. .+..-..+||+++.-|- |+.+.. ..+. .....
T Consensus 16 ~i~fev~LP~~WN----gR-~~~~GgGG~~G-~i~~~~~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~ 88 (474)
T PF07519_consen 16 NIRFEVWLPDNWN----GR-FLQVGGGGFAG-GINYADGKASMATALARGYATASTDS-GHQGSAGSDDASFGNNPEALL 88 (474)
T ss_pred eEEEEEECChhhc----cC-eEEECCCeeeC-cccccccccccchhhhcCeEEEEecC-CCCCCcccccccccCCHHHHH
Confidence 5666677887432 12 34443443332 111111 13445688999999993 221111 1111 00112
Q ss_pred CCCcchHHHHHHHHHHHHHcC-CCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccch
Q 003363 646 KVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (826)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~-~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~ 708 (826)
+++...+.+...+-+.|++.. .-.+++-...|.|-||-.++.+|.++|+.|.++++.+|..++
T Consensus 89 dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~ 152 (474)
T PF07519_consen 89 DFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINW 152 (474)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHH
Confidence 233444556666667777653 356788999999999999999999999999999999996654
No 342
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.30 E-value=0.0045 Score=62.12 Aligned_cols=199 Identities=16% Similarity=0.202 Sum_probs=100.6
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccC-CCCC--CC-CCCccCCCCC---C----cceee-------cCCCccCCCccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSL-GSTK--GG-SSDKDCNSWK---G----QGDWE-------EDWGETYAGKRQ 272 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~-~~~~--~~-~~~~~~~~~~---~----~~~~~-------~d~g~~~~~~~~ 272 (826)
.+..|||||.-|+..+++.......... .+.+ .. ...+.+..+. + ...|. |+----.+..+.
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 5788999999999988877543211111 0111 11 1111111111 1 12221 110111233345
Q ss_pred ceEEEEEccCCceEecc-CCCC--C-CccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 273 PSLFVININSGEVQAVK-GIPK--S-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~-~~~~--~-~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
.-|.+||.-+|+.+.-- .... + ....+++|||||.+ | |.+. ++ -|.+.|+..
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq----l-faGy-------------kr--cirvFdt~R---- 188 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ----L-FAGY-------------KR--CIRVFDTSR---- 188 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe----E-eecc-------------cc--eEEEeeccC----
Confidence 66999999999887541 0111 1 13447899999997 6 4441 12 355555421
Q ss_pred hhhhhhhcCCCCCCc---ceecCC----CCccccCceecCCC-CEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcc
Q 003363 349 ASELELKESSSEDLP---VVNLTE----SISSAFFPRFSPDG-KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 420 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~---~~~Lt~----~~~~~~~p~~SpDG-~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 420 (826)
.+.. ...++. ..+-+...+|||-. +.+++.+.- .++-++.+...+...+.
T Consensus 189 -----------pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-----------q~~giy~~~~~~pl~ll 246 (406)
T KOG2919|consen 189 -----------PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-----------QRVGIYNDDGRRPLQLL 246 (406)
T ss_pred -----------CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccc-----------ceeeeEecCCCCceeee
Confidence 1111 112222 13345667888844 466655532 23344444565554443
Q ss_pred cceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003363 421 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (826)
Q Consensus 421 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~ 476 (826)
.+. ..++..+.|.+||..|+..+... ..|..+|+.
T Consensus 247 ggh-------------------~gGvThL~~~edGn~lfsGaRk~--dkIl~WDiR 281 (406)
T KOG2919|consen 247 GGH-------------------GGGVTHLQWCEDGNKLFSGARKD--DKILCWDIR 281 (406)
T ss_pred ccc-------------------CCCeeeEEeccCcCeecccccCC--CeEEEEeeh
Confidence 322 23667889999999887654333 345555654
No 343
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.28 E-value=0.0088 Score=59.67 Aligned_cols=208 Identities=14% Similarity=0.157 Sum_probs=121.6
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCC-c-cceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003363 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN-S-VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (826)
Q Consensus 104 ~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~-~-~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (826)
+-.+-..+.|.....-|.+++++..+.+.++.+...+ + ..++.. ..+...+|.|.|.+|+...+-. +
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~------~~vrsiSfHPsGefllvgTdHp-----~ 239 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDT------EPVRSISFHPSGEFLLVGTDHP-----T 239 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhcc------ceeeeEeecCCCceEEEecCCC-----c
Confidence 3455667778877777777888888888887544321 1 122222 3488999999999998754432 2
Q ss_pred EEEecCCceeEEEe--cCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee
Q 003363 182 FELWSQSQLEKEFH--VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (826)
Q Consensus 182 ~~i~~~~~~~~~~~--~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (826)
..+++-...+-... -.....+.| ..+..|+.|+.-+..+
T Consensus 240 ~rlYdv~T~QcfvsanPd~qht~ai------~~V~Ys~t~~lYvTaS--------------------------------- 280 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSANPDDQHTGAI------TQVRYSSTGSLYVTAS--------------------------------- 280 (430)
T ss_pred eeEEeccceeEeeecCcccccccce------eEEEecCCccEEEEec---------------------------------
Confidence 33332211111111 122334444 7889999997433322
Q ss_pred ecCCCccCCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceE
Q 003363 260 EEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (826)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~ 338 (826)
.++.|.+||--+++ ++.+....+...+.+..|+-|||+ |...+ .++.++
T Consensus 281 -----------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky----iLsSG---------------~DS~vk 330 (430)
T KOG0640|consen 281 -----------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY----ILSSG---------------KDSTVK 330 (430)
T ss_pred -----------cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE----EeecC---------------Ccceee
Confidence 23678888865554 333322233446778999999998 87766 223455
Q ss_pred EEEcccccchhhhhhhhcCCCCCCccee-cCCC-----CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCC
Q 003363 339 AVRVSLYKSEASELELKESSSEDLPVVN-LTES-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (826)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-Lt~~-----~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~ 412 (826)
++.+ .++...+ -|.. ........|.....+++|-.... ..|..||..
T Consensus 331 LWEi-----------------~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas----------~slcsWdaR 383 (430)
T KOG0640|consen 331 LWEI-----------------STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS----------NSLCSWDAR 383 (430)
T ss_pred eeee-----------------cCCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc----------Cceeecccc
Confidence 5555 3333222 2211 11234566777777777766543 578899987
Q ss_pred CCCCCC
Q 003363 413 TNGNFS 418 (826)
Q Consensus 413 ~~~~~~ 418 (826)
++..+.
T Consensus 384 tadr~~ 389 (430)
T KOG0640|consen 384 TADRVA 389 (430)
T ss_pred chhhhh
Confidence 766543
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.26 E-value=0.028 Score=63.16 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=23.6
Q ss_pred ccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 372 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 372 ~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
.+.....+||||++++-.... ..++-++|+.+-.
T Consensus 321 KsPHGV~vSPDGkylyVankl----------S~tVSVIDv~k~k 354 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKL----------SPTVTVIDVRKLD 354 (635)
T ss_pred CCccceEECCCCCEEEEeCCC----------CCcEEEEEChhhh
Confidence 356778999999997644433 2568888887633
No 345
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.26 E-value=0.074 Score=64.61 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=62.4
Q ss_pred cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccc
Q 003363 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (826)
Q Consensus 373 ~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (826)
......|-.||+++|..+-.... +....|.+|+-++ .....+.. .+| --..++|-
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~-----~~~R~iRVy~ReG-~L~stSE~---------------v~g----Le~~l~Wr 265 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPET-----GSRRVIRVYSREG-ELQSTSEP---------------VDG----LEGALSWR 265 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCC-----CceeEEEEECCCc-eEEecccc---------------CCC----ccCCccCC
Confidence 34567799999999877764310 1135677777542 22111111 111 12478999
Q ss_pred cCCCEEEEEEEeCCeEEEEEEECCCCcEEEec----CCCCCeeeEEEeecCCEEEEEEeCC
Q 003363 453 SDGCTMLLSSIWGSSQVIISVNVSSGELLRIT----PAESNFSWSLLTLDGDNIIAVSSSP 509 (826)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt----~~~~~~~~~~~s~dg~~l~~~~s~~ 509 (826)
|.|..|..+....+...|..+..++-+-...+ .....+....|+.|+..|++...+.
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~ 326 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR 326 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC
Confidence 99985554443345556666665543322222 2223455667888888777766433
No 346
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0019 Score=75.17 Aligned_cols=248 Identities=13% Similarity=0.186 Sum_probs=138.4
Q ss_pred cEEEEeCCCCCe---EEEEecCCCCCCeEEEEecC-----CceeEEEecCCCccccccCCCcccceeecCCCC-eEEEEe
Q 003363 156 ASAVVPSPSGSK---LLVVRNPENESPIQFELWSQ-----SQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVA 226 (826)
Q Consensus 156 ~~~~~~SPdG~~---la~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~-~ia~~~ 226 (826)
-...+|++.|.. |+.. ..++| -+.+|+. +....++..-...+|.| .++.|+|... .||-.+
T Consensus 67 F~kL~W~~~g~~~~GlIaG-G~edG---~I~ly~p~~~~~~~~~~~la~~~~h~G~V------~gLDfN~~q~nlLASGa 136 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAG-GLEDG---NIVLYDPASIIANASEEVLATKSKHTGPV------LGLDFNPFQGNLLASGA 136 (1049)
T ss_pred ceeeeecccCCCccceeec-cccCC---ceEEecchhhccCcchHHHhhhcccCCce------eeeeccccCCceeeccC
Confidence 345788888887 2222 11223 3445522 22222332234566777 8899999987 777766
Q ss_pred ecCCCCCCCccCCCCCCCCCCcc--CCCCCCcceeecCCCccC-CCccCceEEEEEccCCc-eEeccCCCCCCccceEEE
Q 003363 227 EEPSPSKPTFSLGSTKGGSSDKD--CNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVW 302 (826)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~g~~~-~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~w 302 (826)
.++..- .|+..-......... ..+-+.-..|...--..+ ++.......+||+...+ +..+..+.+...+..++|
T Consensus 137 ~~geI~--iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~W 214 (1049)
T KOG0307|consen 137 DDGEIL--IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAW 214 (1049)
T ss_pred CCCcEE--EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeee
Confidence 665433 333211111100100 011111222332211112 22234578889997664 233322333345668999
Q ss_pred eeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCC
Q 003363 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD 382 (826)
Q Consensus 303 SPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD 382 (826)
.||.-. -+.++.+++ +..-|-.+|+.. .+...+.++.+...+.+..|++.
T Consensus 215 hP~~aT----ql~~As~dd-----------~~PviqlWDlR~---------------assP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 215 HPDHAT----QLLVASGDD-----------SAPVIQLWDLRF---------------ASSPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred CCCCce----eeeeecCCC-----------CCceeEeecccc---------------cCCchhhhcccccceeeeccCCC
Confidence 999987 555543322 333566777643 55667778888888999999999
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEE
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (826)
+..++..+.++ +++..||..+++... -+....+ | ...+.|.|..-.++..+
T Consensus 265 D~~lllSsgkD----------~~ii~wN~~tgEvl~----------~~p~~~n------W---~fdv~w~pr~P~~~A~a 315 (1049)
T KOG0307|consen 265 DPRLLLSSGKD----------NRIICWNPNTGEVLG----------ELPAQGN------W---CFDVQWCPRNPSVMAAA 315 (1049)
T ss_pred CchhhhcccCC----------CCeeEecCCCceEee----------ecCCCCc------c---eeeeeecCCCcchhhhh
Confidence 98888888665 679999988866521 1111111 2 22556777655566666
Q ss_pred EeCCeEEEEEEE
Q 003363 463 IWGSSQVIISVN 474 (826)
Q Consensus 463 ~~~~~~~l~~vd 474 (826)
.-+|...||.+-
T Consensus 316 sfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 316 SFDGKISIYSLQ 327 (1049)
T ss_pred eeccceeeeeee
Confidence 667777777764
No 347
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.25 E-value=0.0025 Score=65.09 Aligned_cols=144 Identities=18% Similarity=0.200 Sum_probs=91.5
Q ss_pred ceEEEEEccCCceE-eccCC-CCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 273 PSLFVININSGEVQ-AVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 273 ~~l~v~d~~~g~~~-~l~~~-~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
.+||++|+.+-++- .+..+ +.....-.++.++++.+ |+|-+.. ...+++++|+.
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y----lAyp~s~-------------t~GdV~l~d~~------- 161 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY----LAYPGST-------------TSGDVVLFDTI------- 161 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCce----EEecCCC-------------CCceEEEEEcc-------
Confidence 46999999765532 22222 22223334444445556 8887522 24588999872
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
.-.....+..+.+.....+|||||+.||-.|.+. .-|.++..+.|++.. +
T Consensus 162 ---------nl~~v~~I~aH~~~lAalafs~~G~llATASeKG----------TVIRVf~v~~G~kl~---------e-- 211 (391)
T KOG2110|consen 162 ---------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKG----------TVIRVFSVPEGQKLY---------E-- 211 (391)
T ss_pred ---------cceeeeEEEecCCceeEEEECCCCCEEEEeccCc----------eEEEEEEcCCccEee---------e--
Confidence 2233455667788888999999999999888774 336667776655421 0
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 477 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~t 477 (826)
--.|.++.++.+++|+||++.| ..++.....++|.++...
T Consensus 212 ------FRRG~~~~~IySL~Fs~ds~~L-~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 212 ------FRRGTYPVSIYSLSFSPDSQFL-AASSNTETVHIFKLEKVS 251 (391)
T ss_pred ------eeCCceeeEEEEEEECCCCCeE-EEecCCCeEEEEEecccc
Confidence 0112344567789999999855 444556788999987543
No 348
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.24 E-value=0.012 Score=68.23 Aligned_cols=92 Identities=21% Similarity=0.249 Sum_probs=62.2
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEE-EeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF-VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf-~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
..|.++|.++...+.+. +.....+-+|.|||||+. |+| ++.+.- .+...||+.++..
T Consensus 329 ~~L~~~D~dG~n~~~ve-~~~~~~i~sP~~SPDG~~----vAY~ts~e~~----------~g~s~vYv~~L~t------- 386 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVE-IEDTISVYHPDISPDGKK----VAFCTGIEGL----------PGKSSVYVRNLNA------- 386 (912)
T ss_pred CeEEEEecCCCCceEEE-ecCCCceecCcCCCCCCE----EEEEEeecCC----------CCCceEEEEehhc-------
Confidence 38999999998888762 345667788999999999 999 664331 1345799999942
Q ss_pred hhhhcCCCCCCcceecCCCCccccCceecCCCCE-EEEEeccCC
Q 003363 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKF-LVFLSAKSS 394 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~-l~f~s~~~~ 394 (826)
.+....+|.-....+-..+....|.. |+|++...+
T Consensus 387 --------~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~n 422 (912)
T TIGR02171 387 --------SGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDASN 422 (912)
T ss_pred --------cCCCceEeecccccccceEecCCCCeEEEEEcCCCC
Confidence 33445566555444444444677754 677776543
No 349
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.24 E-value=0.044 Score=64.25 Aligned_cols=164 Identities=13% Similarity=0.173 Sum_probs=88.1
Q ss_pred EEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCC---
Q 003363 99 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE--- 175 (826)
Q Consensus 99 ~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~--- 175 (826)
...+.+||||+.++|...... ....+|+..+. + .++... ..+....|||+|+.+++.....
T Consensus 62 ~~~~~~spdg~~~~~~~~~~~-----~~~~l~l~~~~--g----~~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~~ 125 (620)
T COG1506 62 VSELRWSPDGSVLAFVSTDGG-----RVAQLYLVDVG--G----LITKTA-----FGVSDARWSPDGDRIAFLTAEGASK 125 (620)
T ss_pred ccccccCCCCCEEEEEeccCC-----CcceEEEEecC--C----ceeeee-----cccccceeCCCCCeEEEEecccccc
Confidence 345556999999999873222 35567776643 1 222232 3578899999999999943211
Q ss_pred -CCC----CeEEEEe---cCCceeEEEecCCC-c-cccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCC
Q 003363 176 -NES----PIQFELW---SQSQLEKEFHVPQT-V-HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 245 (826)
Q Consensus 176 -~~~----~~~~~i~---~~~~~~~~~~~~~~-~-~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~ 245 (826)
++. ..-+.+| .++....+..+... . .-.......+..++|.+|++.++.........
T Consensus 126 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 192 (620)
T COG1506 126 RDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDAD------------- 192 (620)
T ss_pred cCCceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccC-------------
Confidence 111 0011222 12122222222111 0 00111112334556666667666654433100
Q ss_pred CCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCc
Q 003363 246 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (826)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~ 321 (826)
. .....+++...++++..+ +++......+.|.+||+. +++.+....
T Consensus 193 ----------------~--------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gk~----~~~~~~~~~ 238 (620)
T COG1506 193 ----------------P--------WVTNLYVLIEGNGELESL--TPGEGSISKLAFDADGKS----IALLGTESD 238 (620)
T ss_pred ----------------C--------ceEeeEEEecCCCceEEE--cCCCceeeeeeeCCCCCe----eEEeccCCc
Confidence 0 112333333367788877 677777889999999998 888775443
No 350
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.027 Score=55.01 Aligned_cols=62 Identities=15% Similarity=0.028 Sum_probs=42.2
Q ss_pred CCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 003363 756 SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 821 (826)
Q Consensus 756 ~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~ 821 (826)
++-.+-+-+..|..|..||.+....+.+.+++. ++++-. .+..|.|-...++ .+...+.+.|
T Consensus 239 een~d~l~Fyygt~DgW~p~~~~d~~kdd~~ee--d~~Lde-dki~HAFV~~~~q-~ma~~v~d~~ 300 (301)
T KOG3975|consen 239 EENLDSLWFYYGTNDGWVPSHYYDYYKDDVPEE--DLKLDE-DKIPHAFVVKHAQ-YMANAVFDMI 300 (301)
T ss_pred HhcCcEEEEEccCCCCCcchHHHHHHhhhcchh--ceeecc-ccCCcceeecccH-HHHHHHHHhh
Confidence 333467888999999999988877777777653 455555 6788988755544 4444454443
No 351
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.059 Score=52.39 Aligned_cols=230 Identities=13% Similarity=0.120 Sum_probs=119.6
Q ss_pred CCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecC--CCCeEEEEeecCCCCCCCccCCCC
Q 003363 164 SGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEPSPSKPTFSLGST 241 (826)
Q Consensus 164 dG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSP--Dg~~ia~~~~~~~~~~~~~~~~~~ 241 (826)
-|++||..+.+ +.-.+|.+...++...+..+ .+..|.| ..+.|.. -|..||..+-+
T Consensus 22 ygkrlATcsSD--~tVkIf~v~~n~~s~ll~~L-~Gh~GPV------wqv~wahPk~G~iLAScsYD------------- 79 (299)
T KOG1332|consen 22 YGKRLATCSSD--GTVKIFEVRNNGQSKLLAEL-TGHSGPV------WKVAWAHPKFGTILASCSYD------------- 79 (299)
T ss_pred hcceeeeecCC--ccEEEEEEcCCCCceeeeEe-cCCCCCe------eEEeecccccCcEeeEeecC-------------
Confidence 47888876553 33345555544443444444 3444544 5666766 57777765433
Q ss_pred CCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003363 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (826)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~ 320 (826)
..+.+|.-++|.-.++. -...+.++.+++|.|.+-. +...+-.
T Consensus 80 -------------------------------gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheyg----l~Lacas- 123 (299)
T KOG1332|consen 80 -------------------------------GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYG----LLLACAS- 123 (299)
T ss_pred -------------------------------ceEEEEecCCCchhhhhhhhhhcccceeecccccccc----eEEEEee-
Confidence 45777887777554441 1233557889999998887 6554321
Q ss_pred cceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC--cceecCCCCccccCceecCC---CC-----------
Q 003363 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSPD---GK----------- 384 (826)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~Lt~~~~~~~~p~~SpD---G~----------- 384 (826)
.+..|-+++.+. +++ ..+....+...+.+..|.|- |.
T Consensus 124 ------------SDG~vsvl~~~~---------------~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k 176 (299)
T KOG1332|consen 124 ------------SDGKVSVLTYDS---------------SGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK 176 (299)
T ss_pred ------------CCCcEEEEEEcC---------------CCCccchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence 222444444421 211 12233345556778888876 52
Q ss_pred EEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCC---CEEEEE
Q 003363 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG---CTMLLS 461 (826)
Q Consensus 385 ~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg---~~l~~~ 461 (826)
+|+-.. ..+.+.+|+.+.+.-.. +..+.+ +..-+..++|.|.- +.-+.+
T Consensus 177 rlvSgG-----------cDn~VkiW~~~~~~w~~----------------e~~l~~-H~dwVRDVAwaP~~gl~~s~iAS 228 (299)
T KOG1332|consen 177 RLVSGG-----------CDNLVKIWKFDSDSWKL----------------ERTLEG-HKDWVRDVAWAPSVGLPKSTIAS 228 (299)
T ss_pred eeeccC-----------CccceeeeecCCcchhh----------------hhhhhh-cchhhhhhhhccccCCCceeeEE
Confidence 222111 11223334333321100 001111 22345678888853 344455
Q ss_pred EEeCCeEEEEEEECCCCcEE--EecCCCCCeeeEEEeecCCEEEEEE
Q 003363 462 SIWGSSQVIISVNVSSGELL--RITPAESNFSWSLLTLDGDNIIAVS 506 (826)
Q Consensus 462 ~~~~~~~~l~~vdl~tg~~~--~lt~~~~~~~~~~~s~dg~~l~~~~ 506 (826)
.+.+++..||..+.+.++.+ .|..-........||+.|+.|.+..
T Consensus 229 ~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 229 CSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred ecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec
Confidence 56678888999885544433 2222222344457888887554443
No 352
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.16 E-value=0.007 Score=64.68 Aligned_cols=95 Identities=13% Similarity=0.222 Sum_probs=66.9
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
.+-+|||||.-|+.+.++ +.|.+|.. +|-.+..-
T Consensus 108 ~~gRW~~dGtgLlt~GED--------------------------------------------G~iKiWSr-sGMLRStl- 141 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAGED--------------------------------------------GVIKIWSR-SGMLRSTV- 141 (737)
T ss_pred hhcccCCCCceeeeecCC--------------------------------------------ceEEEEec-cchHHHHH-
Confidence 677899999999887655 45666764 55544321
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
......+..++|.|++.. ++|..- .++++-.+. ....+.+-..+
T Consensus 142 ~Q~~~~v~c~~W~p~S~~----vl~c~g----------------~h~~IKpL~----------------~n~k~i~WkAH 185 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNS----IVFCQG----------------GHISIKPLA----------------ANSKIIRWRAH 185 (737)
T ss_pred hhcCceeEEEEECCCCCc----eEEecC----------------CeEEEeecc----------------cccceeEEecc
Confidence 233446778999999999 999761 166666662 33445555667
Q ss_pred CccccCceecCCCCEEE
Q 003363 371 ISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~l~ 387 (826)
.+-+....||+....|+
T Consensus 186 DGiiL~~~W~~~s~lI~ 202 (737)
T KOG1524|consen 186 DGLVLSLSWSTQSNIIA 202 (737)
T ss_pred CcEEEEeecCcccccee
Confidence 78888999999988776
No 353
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.15 E-value=0.014 Score=60.92 Aligned_cols=186 Identities=12% Similarity=0.117 Sum_probs=111.1
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
.+......|.|+|++..++++ .|-..+ +....++.+-...+ .+....|.|||-.+...+.+.
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~-----~w~Fsd~~~g~~lt~vs~~~s~v--------~~ts~~fHpDgLifgtgt~d~-- 369 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDG-----TWAFSDISSGSQLTVVSDETSDV--------EYTSAAFHPDGLIFGTGTPDG-- 369 (506)
T ss_pred cceeeeeccCCcEEEEecCCc-----eEEEEEccCCcEEEEEeeccccc--------eeEEeeEcCCceEEeccCCCc--
Confidence 367888899999999887654 454442 33333333321112 236889999994443333333
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
....|+.........++.+..-+....|++++=...+...+..+++||+..-+ .+.+. .+....+..+.|-+.|+.
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~-l~~~~~v~s~~fD~SGt~-- 446 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ-LDEKKEVNSLSFDQSGTY-- 446 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee-ccccccceeEEEcCCCCe--
Confidence 33455544444455666677777778888884333334445569999985432 22221 233346778999999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC---cceecCCCCccccCceecCCCCEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSPDGKFLV 387 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~Lt~~~~~~~~p~~SpDG~~l~ 387 (826)
|+..+ ..-.||.++- .+. +...+..+.+.....+|-.+-++|+
T Consensus 447 --L~~~g---------------~~l~Vy~~~k-----------------~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~ 492 (506)
T KOG0289|consen 447 --LGIAG---------------SDLQVYICKK-----------------KTKSWTEIKELADHSGLSTGVRFGEHAQYLA 492 (506)
T ss_pred --EEeec---------------ceeEEEEEec-----------------ccccceeeehhhhcccccceeeecccceEEe
Confidence 87765 1125666653 222 3344455555667788888888777
Q ss_pred EEecc
Q 003363 388 FLSAK 392 (826)
Q Consensus 388 f~s~~ 392 (826)
-.+++
T Consensus 493 s~smd 497 (506)
T KOG0289|consen 493 STSMD 497 (506)
T ss_pred eccch
Confidence 66655
No 354
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.15 E-value=0.076 Score=65.77 Aligned_cols=85 Identities=11% Similarity=0.149 Sum_probs=44.8
Q ss_pred cCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCC-CCcccccCCCCCCcccc
Q 003363 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD-CFPGLYSSSILSNPWLS 453 (826)
Q Consensus 375 ~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~g~~~~~~~~~~ws~ 453 (826)
....+++||+ +|++... ...|.++|..++....+..... . .. .++ ...+.+ .....+++++
T Consensus 807 ~Gvavd~dG~--LYVADs~---------N~rIrviD~~tg~v~tiaG~G~--~---G~-~dG~~~~a~l-~~P~GIavd~ 868 (1057)
T PLN02919 807 LGVLCAKDGQ--IYVADSY---------NHKIKKLDPATKRVTTLAGTGK--A---GF-KDGKALKAQL-SEPAGLALGE 868 (1057)
T ss_pred ceeeEeCCCc--EEEEECC---------CCEEEEEECCCCeEEEEeccCC--c---CC-CCCccccccc-CCceEEEEeC
Confidence 4567899997 3454432 3679999987754322111000 0 00 000 000000 1234668889
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003363 454 DGCTMLLSSIWGSSQVIISVNVSSGEL 480 (826)
Q Consensus 454 Dg~~l~~~~~~~~~~~l~~vdl~tg~~ 480 (826)
||+ ||++. .++..|..+|+.+++.
T Consensus 869 dG~-lyVaD--t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 869 NGR-LFVAD--TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCC-EEEEE--CCCCEEEEEECCCCcc
Confidence 997 65543 3445677788888765
No 355
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.14 E-value=0.022 Score=63.07 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=73.2
Q ss_pred cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCC-ceEe
Q 003363 209 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQA 287 (826)
Q Consensus 209 ~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g-~~~~ 287 (826)
.+..+..||+|+.||....... +....|++|+..+= ++..
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~---------------------------------------~ehAvI~lw~t~~W~~~~~ 567 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSL---------------------------------------KEHAVIRLWNTANWLQVQE 567 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCC---------------------------------------ccceEEEEEeccchhhhhe
Confidence 4567889999998887654331 13467999997663 3444
Q ss_pred ccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec
Q 003363 288 VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL 367 (826)
Q Consensus 288 l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L 367 (826)
| ...++.+.++.|||||+. |+-++. +|.-.||..--+. . ..-....+
T Consensus 568 L--~~HsLTVT~l~FSpdg~~----LLsvsR-------------DRt~sl~~~~~~~---~-----------~e~~fa~~ 614 (764)
T KOG1063|consen 568 L--EGHSLTVTRLAFSPDGRY----LLSVSR-------------DRTVSLYEVQEDI---K-----------DEFRFACL 614 (764)
T ss_pred e--cccceEEEEEEECCCCcE----EEEeec-------------CceEEeeeeeccc---c-----------hhhhhccc
Confidence 6 567789999999999999 988873 2323455442100 0 01112235
Q ss_pred CCCCccccCceecCCCCEEEEEecc
Q 003363 368 TESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 368 t~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
..+..-+....|+||+++++..|.+
T Consensus 615 k~HtRIIWdcsW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 615 KAHTRIIWDCSWSPDEKYFATASRD 639 (764)
T ss_pred cccceEEEEcccCcccceeEEecCC
Confidence 5566667889999999996655544
No 356
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.14 E-value=0.061 Score=51.94 Aligned_cols=198 Identities=15% Similarity=0.105 Sum_probs=121.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.+..+.+.-||++.+.. ++...+.+|+ .|...+..... +. ++....-|.|..+++--..++.
T Consensus 18 gaV~avryN~dGnY~ltc-----GsdrtvrLWNp~rg~liktYsgh-G~--------EVlD~~~s~Dnskf~s~GgDk~- 82 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTC-----GSDRTVRLWNPLRGALIKTYSGH-GH--------EVLDAALSSDNSKFASCGGDKA- 82 (307)
T ss_pred cceEEEEEccCCCEEEEc-----CCCceEEeecccccceeeeecCC-Cc--------eeeeccccccccccccCCCCce-
Confidence 358899999999999876 3445788994 34443332211 11 1257778888888876544432
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 310 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~ 310 (826)
...|+...++....+..+..-++...|.++-.-.+++.-+..+-+||-.+..++++.-.... -.+.++.. .+..
T Consensus 83 -v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~he-- 157 (307)
T KOG0316|consen 83 -VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHE-- 157 (307)
T ss_pred -EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccE--
Confidence 23566666777777777777777788887755556666778899999876655444201111 12222222 2333
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC--CccccCceecCCCCEEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVF 388 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~l~f 388 (826)
|+-.+ -+..+..+|+ ..| +++.. ...+.+..||+||+.++-
T Consensus 158 --IvaGS---------------~DGtvRtydi-----------------R~G---~l~sDy~g~pit~vs~s~d~nc~La 200 (307)
T KOG0316|consen 158 --IVAGS---------------VDGTVRTYDI-----------------RKG---TLSSDYFGHPITSVSFSKDGNCSLA 200 (307)
T ss_pred --EEeec---------------cCCcEEEEEe-----------------ecc---eeehhhcCCcceeEEecCCCCEEEE
Confidence 44443 2235667776 222 23222 234778999999998776
Q ss_pred EeccCCCCCCCCcccceEEEEeCCCCCCCCc
Q 003363 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419 (826)
Q Consensus 389 ~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 419 (826)
.+.+ ..|+++|-.+|+....
T Consensus 201 ~~l~-----------stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 201 SSLD-----------STLRLLDKETGKLLKS 220 (307)
T ss_pred eecc-----------ceeeecccchhHHHHH
Confidence 6654 4589999888776443
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.012 Score=61.74 Aligned_cols=77 Identities=17% Similarity=0.097 Sum_probs=43.8
Q ss_pred cCceecCCCCEEEEEecc---CCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCcc
Q 003363 375 FFPRFSPDGKFLVFLSAK---SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (826)
Q Consensus 375 ~~p~~SpDG~~l~f~s~~---~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~w 451 (826)
...+..|||. ++|..+. ... ........||++|..++..+.+.... ...+.++|
T Consensus 114 ND~~v~pdG~-~wfgt~~~~~~~~--~~~~~~G~lyr~~p~g~~~~l~~~~~--------------------~~~NGla~ 170 (307)
T COG3386 114 NDGVVDPDGR-IWFGDMGYFDLGK--SEERPTGSLYRVDPDGGVVRLLDDDL--------------------TIPNGLAF 170 (307)
T ss_pred CceeEcCCCC-EEEeCCCccccCc--cccCCcceEEEEcCCCCEEEeecCcE--------------------EecCceEE
Confidence 4567789987 5677665 111 11122347999986433322221111 02358899
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECC
Q 003363 452 LSDGCTMLLSSIWGSSQVIISVNVS 476 (826)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~vdl~ 476 (826)
||||+++|++-+. ...|++++++
T Consensus 171 SpDg~tly~aDT~--~~~i~r~~~d 193 (307)
T COG3386 171 SPDGKTLYVADTP--ANRIHRYDLD 193 (307)
T ss_pred CCCCCEEEEEeCC--CCeEEEEecC
Confidence 9999999887433 3456666554
No 358
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.12 E-value=0.00079 Score=46.56 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=18.8
Q ss_pred cccEEEEeCCCCCeEEEEecCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPE 175 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~ 175 (826)
.....|+|||||++|+|+++..
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT
T ss_pred ccccCEEEecCCCEEEEEecCC
Confidence 4688999999999999999876
No 359
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.12 E-value=0.029 Score=58.01 Aligned_cols=217 Identities=10% Similarity=0.057 Sum_probs=115.8
Q ss_pred cCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEE
Q 003363 91 NISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLV 170 (826)
Q Consensus 91 ~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~ 170 (826)
.|+-....|=...-.-+.+.|++.+.... .+-..+.++...|.-..+. ..+....+.+....|+|-...++-
T Consensus 27 dIrVs~~tWDS~fcavNPkfiAvi~easg------Ggaf~ViPl~k~Gr~d~~~--P~v~GHt~~vLDi~w~PfnD~vIA 98 (472)
T KOG0303|consen 27 DIRVSRVTWDSSFCAVNPKFVAVIIEASG------GGAFLVIPLVKTGRMDASY--PLVCGHTAPVLDIDWCPFNDCVIA 98 (472)
T ss_pred ceeeeeeeccccccccCCceEEEEEecCC------CcceeecccccccccCCCC--CCccCccccccccccCccCCceee
Confidence 33333333333333446677777765432 2233344443333111110 111112245888999998876643
Q ss_pred EecCCCCCCeEEEEecCCceeEEE----ecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCC
Q 003363 171 VRNPENESPIQFELWSQSQLEKEF----HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 246 (826)
Q Consensus 171 ~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~ 246 (826)
+..++....+|.|..++-.+.++ .+ .+..-.| +-+.|.|--..+++.+.
T Consensus 99 -SgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrV------g~V~wHPtA~NVLlsag------------------- 151 (472)
T KOG0303|consen 99 -SGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRV------GLVQWHPTAPNVLLSAG------------------- 151 (472)
T ss_pred -cCCCCceEEEEECCCcccccCcccceEEE-eecceeE------EEEeecccchhhHhhcc-------------------
Confidence 22222333455555554333322 12 1222222 67889987665555432
Q ss_pred CccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeee
Q 003363 247 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 326 (826)
Q Consensus 247 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g 326 (826)
..+.+.+||+.+|+.-.- ......+.+++|+-||.. |+-++
T Consensus 152 ------------------------~Dn~v~iWnv~tgeali~--l~hpd~i~S~sfn~dGs~----l~Ttc--------- 192 (472)
T KOG0303|consen 152 ------------------------SDNTVSIWNVGTGEALIT--LDHPDMVYSMSFNRDGSL----LCTTC--------- 192 (472)
T ss_pred ------------------------CCceEEEEeccCCceeee--cCCCCeEEEEEeccCCce----eeeec---------
Confidence 458899999999985432 335556789999999998 77766
Q ss_pred eeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec-CCCCc-cccCceecCCCCEEEEEeccCCCCCCCCcccc
Q 003363 327 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESIS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (826)
Q Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~~~~-~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~ 404 (826)
++..|.++|. ..+++..- -.+.+ ......|-.+|+ |+.+.-.. .+..
T Consensus 193 ------kDKkvRv~dp-----------------r~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr-------~seR 241 (472)
T KOG0303|consen 193 ------KDKKVRVIDP-----------------RRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSR-------MSER 241 (472)
T ss_pred ------ccceeEEEcC-----------------CCCcEeeecccccCCCcceeEEeccCc-eeeecccc-------cccc
Confidence 3346888886 44443322 22333 355677889998 43332221 2334
Q ss_pred eEEEEeCC
Q 003363 405 SLHRIDWP 412 (826)
Q Consensus 405 ~l~~~d~~ 412 (826)
++-+||..
T Consensus 242 q~aLwdp~ 249 (472)
T KOG0303|consen 242 QIALWDPN 249 (472)
T ss_pred ceeccCcc
Confidence 56667643
No 360
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.12 E-value=0.025 Score=60.06 Aligned_cols=210 Identities=12% Similarity=0.079 Sum_probs=126.7
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccc
Q 003363 125 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSV 204 (826)
Q Consensus 125 ~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v 204 (826)
...-+.++++ +...-.+++..+. ..+....|+|++.+++....++ .+..+|+-.+..-.+++. +..+-|
T Consensus 88 ~sG~V~vfD~-k~r~iLR~~~ah~-----apv~~~~f~~~d~t~l~s~sDd----~v~k~~d~s~a~v~~~l~-~htDYV 156 (487)
T KOG0310|consen 88 ESGHVKVFDM-KSRVILRQLYAHQ-----APVHVTKFSPQDNTMLVSGSDD----KVVKYWDLSTAYVQAELS-GHTDYV 156 (487)
T ss_pred CcCcEEEecc-ccHHHHHHHhhcc-----CceeEEEecccCCeEEEecCCC----ceEEEEEcCCcEEEEEec-CCccee
Confidence 3444555553 1211234444444 3377789999999887654433 355566322222133332 222222
Q ss_pred cCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc
Q 003363 205 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 284 (826)
Q Consensus 205 ~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~ 284 (826)
.+.+|+|-..+|++... -+..|.+||+.+..
T Consensus 157 ------R~g~~~~~~~hivvtGs-------------------------------------------YDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 157 ------RCGDISPANDHIVVTGS-------------------------------------------YDGKVRLWDTRSLT 187 (487)
T ss_pred ------EeeccccCCCeEEEecC-------------------------------------------CCceEEEEEeccCC
Confidence 78899999988888622 23568889987654
Q ss_pred eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcc
Q 003363 285 VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 364 (826)
Q Consensus 285 ~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (826)
.+.+. .+.+..+..+.+-|.|.. |+..+ .+.+.+||+- .+++.
T Consensus 188 ~~v~e-lnhg~pVe~vl~lpsgs~----iasAg----------------Gn~vkVWDl~----------------~G~ql 230 (487)
T KOG0310|consen 188 SRVVE-LNHGCPVESVLALPSGSL----IASAG----------------GNSVKVWDLT----------------TGGQL 230 (487)
T ss_pred ceeEE-ecCCCceeeEEEcCCCCE----EEEcC----------------CCeEEEEEec----------------CCcee
Confidence 33332 566778889999999997 76655 1268889982 24443
Q ss_pred -eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCccccc
Q 003363 365 -VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 443 (826)
Q Consensus 365 -~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 443 (826)
....++.-.+++.++..||+.|+-.+-+ .++.++|... ..++.-|. |.
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD-----------~~VKVfd~t~----------~Kvv~s~~----------~~ 279 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLD-----------RHVKVFDTTN----------YKVVHSWK----------YP 279 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccc-----------cceEEEEccc----------eEEEEeee----------cc
Confidence 2333466778899999999998866655 2466666322 11333222 22
Q ss_pred CCCCCCccccCCCEEEEEE
Q 003363 444 SSILSNPWLSDGCTMLLSS 462 (826)
Q Consensus 444 ~~~~~~~ws~Dg~~l~~~~ 462 (826)
..+.+++.+||++++++..
T Consensus 280 ~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 280 GPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred cceeeEEecCCCceEEEec
Confidence 2566778899999887754
No 361
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.07 E-value=0.028 Score=54.12 Aligned_cols=202 Identities=13% Similarity=0.077 Sum_probs=111.1
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
..+++.-||++.+....+.+.+ .|+...+...+....+..-+-..+-+-|-....+..++..+++||+++|++.+-.
T Consensus 21 ~avryN~dGnY~ltcGsdrtvr--LWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~- 97 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVR--LWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF- 97 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEE--eecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-
Confidence 7888999999887766666544 3443333333333322221212222222223334456789999999999875431
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec-CC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TE 369 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~ 369 (826)
-.....+..+.|..+.. +++.+. .++.+..+|... ..-++.++ .+
T Consensus 98 rgH~aqVNtV~fNeesS-----Vv~Sgs--------------fD~s~r~wDCRS---------------~s~ePiQilde 143 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESS-----VVASGS--------------FDSSVRLWDCRS---------------RSFEPIQILDE 143 (307)
T ss_pred ccccceeeEEEecCcce-----EEEecc--------------ccceeEEEEccc---------------CCCCccchhhh
Confidence 23344677889988777 666551 334677777632 22333333 33
Q ss_pred CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCC
Q 003363 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (826)
Q Consensus 370 ~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 449 (826)
....+.+...+ +..|+-.|.+ ..+..+|+.-|.... +. ....+...
T Consensus 144 a~D~V~Si~v~--~heIvaGS~D-----------GtvRtydiR~G~l~s---Dy------------------~g~pit~v 189 (307)
T KOG0316|consen 144 AKDGVSSIDVA--EHEIVAGSVD-----------GTVRTYDIRKGTLSS---DY------------------FGHPITSV 189 (307)
T ss_pred hcCceeEEEec--ccEEEeeccC-----------CcEEEEEeecceeeh---hh------------------cCCcceeE
Confidence 33345555543 2345444433 346777766554311 00 11234577
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC
Q 003363 450 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 486 (826)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~ 486 (826)
+||+||+-.+..+- +..|.++|-.||++...-.+
T Consensus 190 s~s~d~nc~La~~l---~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 190 SFSKDGNCSLASSL---DSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred EecCCCCEEEEeec---cceeeecccchhHHHHHhcc
Confidence 89999996655432 34567778888886554333
No 362
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=97.05 E-value=0.00091 Score=71.08 Aligned_cols=126 Identities=23% Similarity=0.218 Sum_probs=80.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-HHHHHHH-CCcEEEEECCCCCCCCchhh---hhcCCCCCCcc
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEA---LQSLPGKVGSQ 650 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~-~G~~Vl~~d~rG~~g~G~~~---~~~~~~~~~~~ 650 (826)
+...++.|. . ...+.-++|+++||++-.+...... ....|+. ...+|+.+|||-. .+|-=. ....|+++|
T Consensus 121 LYlNVW~P~-~-~p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG-~FGFL~l~~~~eaPGNmG-- 195 (601)
T KOG4389|consen 121 LYLNVWAPA-A-DPYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVG-AFGFLYLPGHPEAPGNMG-- 195 (601)
T ss_pred eEEEEeccC-C-CCCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeec-cceEEecCCCCCCCCccc--
Confidence 444566663 1 1223349999999887655544332 2345544 4578899999953 244322 223455544
Q ss_pred hHHHHHHHHHHHHHc---CCCCCCcEEEEEecchHHHHHHHHHh--CCCceeEEEecCCccc
Q 003363 651 DVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 707 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~~ 707 (826)
+-|..-|++|+.++ ..-|+++|.|+|.|+|+.-+..-+.. ...+|+.+|+.+|..+
T Consensus 196 -l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 196 -LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred -hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 77889999999886 33689999999999999766433322 1147888888887554
No 363
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=97.03 E-value=0.0038 Score=63.06 Aligned_cols=112 Identities=9% Similarity=0.164 Sum_probs=65.7
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCc--EEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~--~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
....++||+||..... .......++.....|| .++.+.++..+.. ..+. ...........++...++.|.+.
T Consensus 16 ~~~~vlvfVHGyn~~f-~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~--~d~~~a~~s~~~l~~~L~~L~~~-- 89 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSF-EDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYF--YDRESARFSGPALARFLRDLARA-- 89 (233)
T ss_pred CCCeEEEEEeCCCCCH-HHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhh--hhhhhHHHHHHHHHHHHHHHHhc--
Confidence 4568999999954331 2233334444445555 7888888864321 1110 01111112344556666666555
Q ss_pred CCCCcEEEEEecchHHHHHHHHHhC----C-----CceeEEEecCCccc
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQA----P-----DKFVAAAARNPLCN 707 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~~----p-----~~~~a~v~~~p~~~ 707 (826)
....+|.|++||||+.+.+.++... . .+|..+++.+|-++
T Consensus 90 ~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 90 PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 2458999999999999998876532 1 24666777777554
No 364
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.99 E-value=0.049 Score=54.10 Aligned_cols=239 Identities=13% Similarity=0.184 Sum_probs=136.2
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEe-cCCCC-----C
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVR-NPENE-----S 178 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~-~~~~~-----~ 178 (826)
..|...+.|-+...++... .++-+..++.+++... ...|-...+.+...+-||-.++|+-.- ++.++ .
T Consensus 21 tad~d~icFlvgTnslK~d---NqVhll~~d~e~s~l~---skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~ 94 (370)
T KOG1007|consen 21 TADRDHICFLVGTNSLKED---NQVHLLRLDSEGSELL---SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTG 94 (370)
T ss_pred ccCccceEEEEeccccCCc---ceeEEEEecCccchhh---hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceee
Confidence 3456667787766665443 4455555544444321 111211124577777788777765433 32222 2
Q ss_pred CeEEEEe-cCCc-----eeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCC-CC-----C
Q 003363 179 PIQFELW-SQSQ-----LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG-GS-----S 246 (826)
Q Consensus 179 ~~~~~i~-~~~~-----~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~-~~-----~ 246 (826)
..+|.|. .-+. .+.+..++...+|+| ..+.|-|++.+|+...+.. .-.|.....+. .. .
T Consensus 95 aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i------~cvew~Pns~klasm~dn~---i~l~~l~ess~~vaev~ss~ 165 (370)
T KOG1007|consen 95 AAIWQIPEPLGQSNSSTLECVASLDTEAVGKI------NCVEWEPNSDKLASMDDNN---IVLWSLDESSKIVAEVLSSE 165 (370)
T ss_pred EEEEecccccCccccchhhHhhcCCHHHhCce------eeEEEcCCCCeeEEeccCc---eEEEEcccCcchheeecccc
Confidence 2355555 2222 233334454556666 8999999999999876433 11232222221 10 0
Q ss_pred CccCCCCCCcceeec-CCCccCCCccCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCccee
Q 003363 247 DKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 324 (826)
Q Consensus 247 ~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~ 324 (826)
..+...-...+.|+| .-|.++.......|.-||+.+-+.. .+. -.....+.++.|.|+-+. ++.++.
T Consensus 166 s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~----~lvt~g------ 234 (370)
T KOG1007|consen 166 SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQH----ILVTCG------ 234 (370)
T ss_pred cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh-hhhcceeeeccCCCCceE----EEEEcC------
Confidence 111222233667887 4477777777889999998764322 121 112234678889998776 666552
Q ss_pred eeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 325 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 325 ~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
.++.|.++|... ....+..|.++...+...+|.|--.+|+.....
T Consensus 235 --------DdgyvriWD~R~---------------tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 235 --------DDGYVRIWDTRK---------------TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred --------CCccEEEEeccC---------------CCccccccCCCceEEEEEEecCccceEEEecCC
Confidence 233577777632 344567788888889999999988888766644
No 365
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.99 E-value=0.0035 Score=64.44 Aligned_cols=117 Identities=19% Similarity=0.344 Sum_probs=79.8
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHC---C------cEEEEECCCCCCCCchhhhhc
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---G------YSLLIVNYRGSLGFGEEALQS 642 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~---G------~~Vl~~d~rG~~g~G~~~~~~ 642 (826)
.|..+|-+...|+..+..++.-.++++||.|++ ...|-..+..|..- | |.|++|..+| ||.+..
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGs--v~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPG---ygwSd~-- 204 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGS--VREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPG---YGWSDA-- 204 (469)
T ss_pred cceeEEEEEecCCccccCCcccceEEecCCCch--HHHHHhhhhhhcCccccCCccceeEEEeccCCCC---cccCcC--
Confidence 578888888887754344444457889999987 44555566666433 3 7899999999 665532
Q ss_pred CCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEE
Q 003363 643 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 699 (826)
Q Consensus 643 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~ 699 (826)
+...|-. ...++..++-|.=+ +.-++..|-|.-+|..++..++..+|+.+.+.
T Consensus 205 -~sk~GFn-~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~Gl 257 (469)
T KOG2565|consen 205 -PSKTGFN-AAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGL 257 (469)
T ss_pred -CccCCcc-HHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHh
Confidence 3333333 34445555544433 34588999999999999999999999987654
No 366
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.03 Score=60.92 Aligned_cols=266 Identities=16% Similarity=0.142 Sum_probs=136.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.+...+..|.|.+||-.++. | ...|| .+|...+.+.+...+ .+++|+|.+..=+.+......
T Consensus 401 g~Vr~iSvdp~G~wlasGsdD--G---tvriWEi~TgRcvr~~~~d~~I----------~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDD--G---TVRIWEIATGRCVRTVQFDSEI----------RSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CeEEEEEecCCcceeeecCCC--C---cEEEEEeecceEEEEEeeccee----------EEEEecCCCCceeEEEEecCc
Confidence 347788999999999875543 3 45555 455556666655544 899999998854443322211
Q ss_pred ---CCCCccC--CCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccC---Cc--eEeccCCCCCCccceEE
Q 003363 232 ---SKPTFSL--GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS---GE--VQAVKGIPKSLSVGQVV 301 (826)
Q Consensus 232 ---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~---g~--~~~l~~~~~~~~~~~~~ 301 (826)
..+.+.. ..+.....+.... . ......++..|.... ++ +... +...-.+.++.
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~-----~----------~~~p~~~~~~W~~~~~~e~~~~v~~~--I~~~k~i~~vt 528 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAP-----N----------ESEPDAAVVTWSRASLDELEKGVCIV--IKHPKSIRQVT 528 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCC-----C----------ccCCcccceeechhhhhhhccceEEE--EecCCccceee
Confidence 1111110 0000000000000 0 000122344443321 11 2222 34444677999
Q ss_pred EeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecC
Q 003363 302 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP 381 (826)
Q Consensus 302 wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp 381 (826)
|.-+|.+ |+.+.-... ...+++.++... .+. ..+....+.+....|.|
T Consensus 529 WHrkGDY----latV~~~~~------------~~~VliHQLSK~--------------~sQ--~PF~kskG~vq~v~FHP 576 (733)
T KOG0650|consen 529 WHRKGDY----LATVMPDSG------------NKSVLIHQLSKR--------------KSQ--SPFRKSKGLVQRVKFHP 576 (733)
T ss_pred eecCCce----EEEeccCCC------------cceEEEEecccc--------------ccc--CchhhcCCceeEEEecC
Confidence 9999999 988874332 236777777211 111 12223345567778888
Q ss_pred CCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEE
Q 003363 382 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461 (826)
Q Consensus 382 DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (826)
---+|+..+. ..|.++|+..+........ .+..+..++.+|.|..|++.
T Consensus 577 s~p~lfVaTq------------~~vRiYdL~kqelvKkL~t-------------------g~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 577 SKPYLFVATQ------------RSVRIYDLSKQELVKKLLT-------------------GSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred CCceEEEEec------------cceEEEehhHHHHHHHHhc-------------------CCeeeeeeeecCCCCeEEEe
Confidence 7766654443 3488899877543211100 01134567788988888776
Q ss_pred EEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEE
Q 003363 462 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 517 (826)
Q Consensus 462 ~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~ 517 (826)
+ .....-.|-+|+.++-.+.+......+ ...+..++.=+|...+.+..-.++.
T Consensus 626 s-~d~k~~WfDldlsskPyk~lr~H~~av--r~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 626 S-YDKKMCWFDLDLSSKPYKTLRLHEKAV--RSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred c-CCCeeEEEEcccCcchhHHhhhhhhhh--hhhhhccccceeeeecCCCcEEEEe
Confidence 3 334444555666655555554332211 2233344444455444444444443
No 367
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.98 E-value=0.14 Score=51.65 Aligned_cols=142 Identities=18% Similarity=0.228 Sum_probs=86.0
Q ss_pred cceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCC--eEEEEecCCCCCCeEEEEe
Q 003363 108 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS--KLLVVRNPENESPIQFELW 185 (826)
Q Consensus 108 g~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~--~la~~~~~~~~~~~~~~i~ 185 (826)
|..-+..++.+-+++++.+-.|.++++.+... .-.|.... +.+....|+|+-. .|+-.++++ .+.+|
T Consensus 44 ~sitavAVs~~~~aSGssDetI~IYDm~k~~q-lg~ll~Ha-----gsitaL~F~~~~S~shLlS~sdDG-----~i~iw 112 (362)
T KOG0294|consen 44 GSITALAVSGPYVASGSSDETIHIYDMRKRKQ-LGILLSHA-----GSITALKFYPPLSKSHLLSGSDDG-----HIIIW 112 (362)
T ss_pred cceeEEEecceeEeccCCCCcEEEEeccchhh-hcceeccc-----cceEEEEecCCcchhheeeecCCC-----cEEEE
Confidence 33344555666667777788888888744322 11121222 4577778877765 666555443 56788
Q ss_pred cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCc
Q 003363 186 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 265 (826)
Q Consensus 186 ~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 265 (826)
+.+...-+-.+ ....|.| ..++..|.|| ||....
T Consensus 113 ~~~~W~~~~sl-K~H~~~V------t~lsiHPS~K-LALsVg-------------------------------------- 146 (362)
T KOG0294|consen 113 RVGSWELLKSL-KAHKGQV------TDLSIHPSGK-LALSVG-------------------------------------- 146 (362)
T ss_pred EcCCeEEeeee-ccccccc------ceeEecCCCc-eEEEEc--------------------------------------
Confidence 66655333222 2333445 8999999997 555422
Q ss_pred cCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003363 266 TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 266 ~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
++..|-.||+-.|+.-.+ .+-......+.|+|.|.+ .+...
T Consensus 147 -----~D~~lr~WNLV~Gr~a~v--~~L~~~at~v~w~~~Gd~----F~v~~ 187 (362)
T KOG0294|consen 147 -----GDQVLRTWNLVRGRVAFV--LNLKNKATLVSWSPQGDH----FVVSG 187 (362)
T ss_pred -----CCceeeeehhhcCcccee--eccCCcceeeEEcCCCCE----EEEEe
Confidence 235678888877765544 222333445899999998 76665
No 368
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.97 E-value=0.037 Score=55.79 Aligned_cols=222 Identities=15% Similarity=0.056 Sum_probs=105.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
.+..-+|++|+..+|...+.. ...+|.. .+.+.-...+......+. ..++.|+|.+.+|+..+.+.....+
T Consensus 12 pitchAwn~drt~iAv~~~~~--evhiy~~-~~~~~w~~~htls~Hd~~------vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNH--EVHIYSM-LGADLWEPAHTLSEHDKI------VTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred ceeeeeecCCCceEEeccCCc--eEEEEEe-cCCCCceeceehhhhCcc------eeEEeecCCCCceeEccCCCCcccc
Confidence 377789999999999987653 1223332 233322333322222222 3789999999999988776644332
Q ss_pred Ccc-CCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEec---cCCCCCCccceEEEeeCCCCCc
Q 003363 235 TFS-LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV---KGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 235 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l---~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
... ...-+..........-..-+.|+|+-....++.+...|-|+=.+..+-=.+ ...+-...+....|.|++=.
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL-- 160 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL-- 160 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce--
Confidence 221 000000000000000011223555522233333444444444433221111 01343446778899998775
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEE
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~ 389 (826)
|+..+.+..-| --..|+-+++..+ ....+..+..-|+ ........+.+....|||+|..|+|.
T Consensus 161 --laaGs~D~k~r----------VfSayIK~Vdekp----ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 161 --LAAGSTDGKCR----------VFSAYIKGVDEKP----APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred --ecccccCccee----------EEEEeeeccccCC----CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence 55544221110 0122333332110 0000000001111 12222345668899999999999999
Q ss_pred eccCCCCCCCCcccceEEEEeCCCC
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
+.+. .+...|....
T Consensus 225 ~Hds-----------~v~~~da~~p 238 (361)
T KOG1523|consen 225 GHDS-----------TVSFVDAAGP 238 (361)
T ss_pred cCCC-----------ceEEeecCCC
Confidence 9875 3666665443
No 369
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=96.96 E-value=0.15 Score=58.30 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=47.2
Q ss_pred ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEE-ecCCCccccccCCCcccceeecC
Q 003363 141 SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEF-HVPQTVHGSVYADGWFEGISWNS 217 (826)
Q Consensus 141 ~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~-~~~~~~~g~v~~~~~~~~~~wSP 217 (826)
.+.|.|.. ..+...+||+||.+|+- +|...++.+|. .++ ++.. .+...+ ..+.|||
T Consensus 244 ~t~lHWH~-----~~V~~L~fS~~G~~LlS-----GG~E~VLv~Wq~~T~~-kqfLPRLgs~I----------~~i~vS~ 302 (792)
T KOG1963|consen 244 CTLLHWHH-----DEVNSLSFSSDGAYLLS-----GGREGVLVLWQLETGK-KQFLPRLGSPI----------LHIVVSP 302 (792)
T ss_pred ceEEEecc-----cccceeEEecCCceEee-----cccceEEEEEeecCCC-cccccccCCee----------EEEEEcC
Confidence 45666775 45888999999999976 46677999993 333 3333 222233 7899999
Q ss_pred CCCeEEEEeec
Q 003363 218 DETLIAYVAEE 228 (826)
Q Consensus 218 Dg~~ia~~~~~ 228 (826)
|+..-+.+.++
T Consensus 303 ds~~~sl~~~D 313 (792)
T KOG1963|consen 303 DSDLYSLVLED 313 (792)
T ss_pred CCCeEEEEecC
Confidence 99988777554
No 370
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=96.96 E-value=0.00047 Score=73.39 Aligned_cols=92 Identities=16% Similarity=0.293 Sum_probs=58.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
..+....|||||++||.++.++ .+.|. +..++ ..+-....|.. .++.||||||+|+...|+.-.
T Consensus 291 g~in~f~FS~DG~~LA~VSqDG-----fLRvF~fdt~eL---lg~mkSYFGGL------LCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDG-----FLRIFDFDTQEL---LGVMKSYFGGL------LCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred ccccceeEcCCCceEEEEecCc-----eEEEeeccHHHH---HHHHHhhccce------EEEEEcCCccEEEecCCcceE
Confidence 3577889999999999998875 44444 22222 12222222222 689999999999998887754
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeec
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (826)
.. |..........-..+++|+..++|++
T Consensus 357 tV--wSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 357 TV--WSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EE--EEeccceEEEeccccccceeeEeecc
Confidence 32 32222333334456889998888874
No 371
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.24 Score=54.26 Aligned_cols=209 Identities=14% Similarity=0.143 Sum_probs=122.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~ 234 (826)
......+|+|.+++..... ...+..++ ..........+.... .++.++||++.++..-...
T Consensus 76 p~~i~v~~~~~~vyv~~~~---~~~v~vid~~~~~~~~~~~vG~~P----------~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGD---SNTVSVIDTATNTVLGSIPVGLGP----------VGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred ccceeeCCCCCeEEEecCC---CCeEEEEcCcccceeeEeeeccCC----------ceEEECCCCCEEEEEeccc-----
Confidence 4567889999887554322 22455555 222333333333333 5899999999887653211
Q ss_pred CccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003363 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (826)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lv 314 (826)
....+.++|..++++... .+.......++++|||+. ++
T Consensus 138 ------------------------------------~~~~vsvid~~t~~~~~~--~~vG~~P~~~a~~p~g~~----vy 175 (381)
T COG3391 138 ------------------------------------GNNTVSVIDAATNKVTAT--IPVGNTPTGVAVDPDGNK----VY 175 (381)
T ss_pred ------------------------------------CCceEEEEeCCCCeEEEE--EecCCCcceEEECCCCCe----EE
Confidence 236789999988877655 333334478999999996 54
Q ss_pred EEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCccee-----cCCCCccccCceecCCCCEEEEE
Q 003363 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-----LTESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----Lt~~~~~~~~p~~SpDG~~l~f~ 389 (826)
. .+. ..+.|..+|. .+....+ .-..........++|||++++ .
T Consensus 176 v-~~~-------------~~~~v~vi~~-----------------~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~y-V 223 (381)
T COG3391 176 V-TNS-------------DDNTVSVIDT-----------------SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVY-V 223 (381)
T ss_pred E-Eec-------------CCCeEEEEeC-----------------CCcceeccccccccccCCCCceEEECCCCCEEE-E
Confidence 4 432 2236888886 3333332 111222346678999999764 4
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEE
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (826)
.... .....+..+|..++......... . .. ........|+|+.+|+.... ...
T Consensus 224 ~~~~-------~~~~~v~~id~~~~~v~~~~~~~----~-----~~---------~~~~v~~~p~g~~~yv~~~~--~~~ 276 (381)
T COG3391 224 ANDG-------SGSNNVLKIDTATGNVTATDLPV----G-----SG---------APRGVAVDPAGKAAYVANSQ--GGT 276 (381)
T ss_pred Eecc-------CCCceEEEEeCCCceEEEecccc----c-----cC---------CCCceeECCCCCEEEEEecC--CCe
Confidence 4432 11357888887775442110000 0 00 12245678999988776433 456
Q ss_pred EEEEECCCCcEEEe
Q 003363 470 IISVNVSSGELLRI 483 (826)
Q Consensus 470 l~~vdl~tg~~~~l 483 (826)
+..+|..+..+...
T Consensus 277 V~vid~~~~~v~~~ 290 (381)
T COG3391 277 VSVIDGATDRVVKT 290 (381)
T ss_pred EEEEeCCCCceeee
Confidence 78888777665554
No 372
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.91 E-value=0.075 Score=58.55 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=55.7
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003363 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (826)
Q Consensus 105 s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (826)
.|||..+.... ...+++++.+ +|+....|.... ..+..++||.||++.|.. +......+
T Consensus 21 kPDGsqL~lAA----------g~rlliyD~n-dG~llqtLKgHK-----DtVycVAys~dGkrFASG-----~aDK~VI~ 79 (1081)
T KOG1538|consen 21 KPDGTQLILAA----------GSRLLVYDTS-DGTLLQPLKGHK-----DTVYCVAYAKDGKRFASG-----SADKSVII 79 (1081)
T ss_pred CCCCceEEEec----------CCEEEEEeCC-Cccccccccccc-----ceEEEEEEccCCceeccC-----CCceeEEE
Confidence 69999887753 2245666653 333333444443 458899999999999863 33347778
Q ss_pred ecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEe
Q 003363 185 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (826)
Q Consensus 185 ~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~ 226 (826)
|...... +.. ..|+.+ +...+|.|-...|+.-+
T Consensus 80 W~~klEG-~Lk---YSH~D~-----IQCMsFNP~~h~LasCs 112 (1081)
T KOG1538|consen 80 WTSKLEG-ILK---YSHNDA-----IQCMSFNPITHQLASCS 112 (1081)
T ss_pred ecccccc-eee---eccCCe-----eeEeecCchHHHhhhcc
Confidence 8532211 111 112111 37889999988887653
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.17 Score=50.56 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=26.6
Q ss_pred cCceEEEEEccCCceEeccCCC-CCCccceEEEeeCCCCCccEEEEEe
Q 003363 271 RQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~-~~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
.+..|-++|...+ ...+-+.+ ..+..-++.|.+||+. |+...
T Consensus 138 ~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrt----lvvan 180 (366)
T COG3490 138 NRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRT----LVVAN 180 (366)
T ss_pred CCceEEEEecccc-cceecccccCCcCcceeEEecCCcE----EEEeC
Confidence 3467888887633 33332122 2346668999999998 77653
No 374
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.86 E-value=0.0077 Score=67.25 Aligned_cols=134 Identities=19% Similarity=0.163 Sum_probs=76.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCcc---------ch--------HHHHHHHHCCcEEEEECCCCCCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---------YS--------KSLAFLSSVGYSLLIVNYRGSLG 634 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~---------~~--------~~~~~la~~G~~Vl~~d~rG~~g 634 (826)
.+..+..|++...+ .....|+||++.|||+++.... .. .....+. +-..++.+|.+-..|
T Consensus 22 ~~~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~-~~an~l~iD~PvGtG 98 (415)
T PF00450_consen 22 ENAHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWN-KFANLLFIDQPVGTG 98 (415)
T ss_dssp TTEEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GG-GTSEEEEE--STTST
T ss_pred CCcEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeecccccccccccccc-cccceEEEeecCceE
Confidence 45678888887654 4567899999999998753110 00 0000111 126788999665455
Q ss_pred CchhhhhcCCCCCCcchHHHHHHHHHHHHH-cCCCCCCcEEEEEecchHHHHHHHHHh----C------CCceeEEEecC
Q 003363 635 FGEEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAARN 703 (826)
Q Consensus 635 ~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~a~~----~------p~~~~a~v~~~ 703 (826)
|.................+|+..+++...+ .+.....++.|+|.||||..+-.++.. . +-.++++++.+
T Consensus 99 fS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGn 178 (415)
T PF00450_consen 99 FSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGN 178 (415)
T ss_dssp T-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEES
T ss_pred EeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecC
Confidence 654432211111112335666666654444 455666799999999999987665532 2 23589999999
Q ss_pred Cccch
Q 003363 704 PLCNL 708 (826)
Q Consensus 704 p~~~~ 708 (826)
|+++.
T Consensus 179 g~~dp 183 (415)
T PF00450_consen 179 GWIDP 183 (415)
T ss_dssp E-SBH
T ss_pred ccccc
Confidence 98775
No 375
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=96.85 E-value=0.037 Score=61.34 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=63.2
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (826)
--..||+|..+|-.. . .+.+....|+++....- .+...|....+ .+...+|||||++|+-++++.
T Consensus 530 ~l~~s~~gnliASaC-K---S~~~ehAvI~lw~t~~W-~~~~~L~~HsL-----TVT~l~FSpdg~~LLsvsRDR----- 594 (764)
T KOG1063|consen 530 ALAISPTGNLIASAC-K---SSLKEHAVIRLWNTANW-LQVQELEGHSL-----TVTRLAFSPDGRYLLSVSRDR----- 594 (764)
T ss_pred EEEecCCCCEEeehh-h---hCCccceEEEEEeccch-hhhheecccce-----EEEEEEECCCCcEEEEeecCc-----
Confidence 334588888776542 2 23345678888764211 11223544442 478899999999999987653
Q ss_pred EEEEecCC-ceeEEEecC-CCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 181 QFELWSQS-QLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 181 ~~~i~~~~-~~~~~~~~~-~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
.+-+|..+ ...-..+.. ...|-.| +...+|+||++.+|..+.++
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRI-----IWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRI-----IWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred eEEeeeeecccchhhhhccccccceE-----EEEcccCcccceeEEecCCc
Confidence 56666221 111111111 2233222 36778999999977766554
No 376
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.047 Score=53.34 Aligned_cols=175 Identities=13% Similarity=0.192 Sum_probs=106.9
Q ss_pred cCceEEEEEcc-CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 271 RQPSLFVININ-SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 271 ~~~~l~v~d~~-~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
+...||+++++ .+.++.+....-.-...+++||+.-.. +++++. .+..|.++|+..
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~----~~~~a~--------------GDGSLrl~d~~~----- 92 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHEN----QVIAAS--------------GDGSLRLFDLTM----- 92 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcc----eEEEEe--------------cCceEEEeccCC-----
Confidence 56889999996 444444421222335678999999888 888873 334677777632
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeee
Q 003363 350 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (826)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 429 (826)
..+.+..+.++...+.+..|++--++.+.+++-+ ..|.+|+..-....+.
T Consensus 93 ----------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD----------~TiKLW~~~r~~Sv~T---------- 142 (311)
T KOG0277|consen 93 ----------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD----------GTIKLWDPNRPNSVQT---------- 142 (311)
T ss_pred ----------CCcchhHHHhhhhheEEeccccccceeEEeeccC----------CceEeecCCCCcceEe----------
Confidence 4455667777788889999998777776666432 3456665433222111
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
|.| ...-+....|+|--..++.+++.++..+||-++.. |+...|......+---.|+.-...++++...
T Consensus 143 --------f~g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 143 --------FNG-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-GKFMSIEAHNSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred --------ecC-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-CceeEEEeccceeEeecccccCCcEEEecCC
Confidence 222 11223467888876668888777788889988876 5555455544322222444444455555433
No 377
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.84 E-value=0.012 Score=64.61 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=94.7
Q ss_pred cccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCccee-ecCCCccC-CCccCceEEEEEccCCceE
Q 003363 209 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW-EEDWGETY-AGKRQPSLFVININSGEVQ 286 (826)
Q Consensus 209 ~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~g~~~-~~~~~~~l~v~d~~~g~~~ 286 (826)
|...+..--+|+.+...+.+.+.+.+.......-..+...+|..|+.-.++ ..+ .+.+ ++.-...||+||+.+|..+
T Consensus 75 WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~~~ 153 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGTAT 153 (735)
T ss_pred HHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEccCcchh
Confidence 447777778888888777776655322221111233445567777766665 333 3333 3334678999999988543
Q ss_pred eccCCCC-----------CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhh
Q 003363 287 AVKGIPK-----------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 355 (826)
Q Consensus 287 ~l~~~~~-----------~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 355 (826)
.+. ... ..++.+++-.+.|. ++..+ .....|..+|..
T Consensus 154 l~~-s~n~~t~~sl~sG~k~siYSLA~N~t~t-----~ivsG--------------gtek~lr~wDpr------------ 201 (735)
T KOG0308|consen 154 LVA-SFNNVTVNSLGSGPKDSIYSLAMNQTGT-----IIVSG--------------GTEKDLRLWDPR------------ 201 (735)
T ss_pred hhh-hccccccccCCCCCccceeeeecCCcce-----EEEec--------------CcccceEEeccc------------
Confidence 221 111 11333455555553 33322 122367788862
Q ss_pred cCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 356 ESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 356 ~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
...+..+|..+..++.....++||++++-.+++ ..|.+||+.-
T Consensus 202 ----t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSD-----------gtIrlWdLgq 244 (735)
T KOG0308|consen 202 ----TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSD-----------GTIRLWDLGQ 244 (735)
T ss_pred ----cccceeeeeccccceEEEEEcCCCCeEeecCCC-----------ceEEeeeccc
Confidence 345577888888889999999999999877765 3588888744
No 378
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=96.83 E-value=0.098 Score=55.77 Aligned_cols=241 Identities=12% Similarity=0.021 Sum_probs=124.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCce--eEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~--~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
++....|+-... |+..+..+ ..+..+| ..|+. .+++....+.. ..-+...++| ++-++-....
T Consensus 36 g~~s~~w~~~n~-lvvas~~g---dk~~~~~~K~g~~~~Vp~~~k~~gd~-----~~Cv~~~s~S-----~y~~sgG~~~ 101 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAG---DKVMRIKEKDGKTPEVPRVRKLTGDN-----AFCVACASQS-----LYEISGGQSG 101 (673)
T ss_pred cceeeeccccce-EEEeecCC---ceeEEEecccCCCCccceeeccccch-----HHHHhhhhcc-----eeeeccCcCc
Confidence 478888876554 55544433 2367777 33331 22222221110 0001233344 3333322222
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
-...|+...+-.-+..+++.+-+.-+.|.-.--.........+|.+..+.++.-..-.+.+....+..+.+||..+.
T Consensus 102 ~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~--- 178 (673)
T KOG4378|consen 102 CVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF--- 178 (673)
T ss_pred eeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce---
Confidence 23344433333334455555433322332111111122234678888887765332212444456667889998887
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc--ceecCCCCccccCceecCCCCEEEEE
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFLVFL 389 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~Lt~~~~~~~~p~~SpDG~~l~f~ 389 (826)
++..+. ....+.+||. .+.. ...+..+...+....|||-...|+..
T Consensus 179 -lL~~as--------------d~G~VtlwDv-----------------~g~sp~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 179 -LLSIAS--------------DKGAVTLWDV-----------------QGMSPIFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred -eeEeec--------------cCCeEEEEec-----------------cCCCcccchhhhccCCcCcceecCCccceEEE
Confidence 666552 2236777886 3322 23444566678889999987655433
Q ss_pred eccCCCCCCCCcccceEEEEeCCCCCCC-CcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeE
Q 003363 390 SAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (826)
Q Consensus 390 s~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (826)
-. -...|+++|..+.... +++ |..-+..++|+++|.+|... ..+.
T Consensus 227 VG----------~Dkki~~yD~~s~~s~~~l~---------------------y~~Plstvaf~~~G~~L~aG---~s~G 272 (673)
T KOG4378|consen 227 VG----------YDKKINIYDIRSQASTDRLT---------------------YSHPLSTVAFSECGTYLCAG---NSKG 272 (673)
T ss_pred ec----------ccceEEEeecccccccceee---------------------ecCCcceeeecCCceEEEee---cCCc
Confidence 31 2367999997653321 111 33345688999999766543 3456
Q ss_pred EEEEEECCCC
Q 003363 469 VIISVNVSSG 478 (826)
Q Consensus 469 ~l~~vdl~tg 478 (826)
.|+.+|+.+.
T Consensus 273 ~~i~YD~R~~ 282 (673)
T KOG4378|consen 273 ELIAYDMRST 282 (673)
T ss_pred eEEEEecccC
Confidence 7888888653
No 379
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=96.82 E-value=0.026 Score=58.63 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=47.9
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccc
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA 374 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~ 374 (826)
.+-+.+|+||+.. +++.+ -.+.++.+|+ ..|. ...+.++....
T Consensus 125 diydL~Ws~d~~~----l~s~s---------------~dns~~l~Dv-----------------~~G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 125 DIYDLAWSPDSNF----LVSGS---------------VDNSVRLWDV-----------------HAGQLLAILDDHEHYV 168 (434)
T ss_pred chhhhhccCCCce----eeeee---------------ccceEEEEEe-----------------ccceeEeecccccccc
Confidence 4557899999998 88877 2346888888 4444 45666777889
Q ss_pred cCceecCCCCEEEEEeccC
Q 003363 375 FFPRFSPDGKFLVFLSAKS 393 (826)
Q Consensus 375 ~~p~~SpDG~~l~f~s~~~ 393 (826)
...+|-|-+++++-.+.++
T Consensus 169 qgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ceeecchhhhhhhhhccCc
Confidence 9999999999998877664
No 380
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.74 E-value=0.34 Score=48.66 Aligned_cols=56 Identities=23% Similarity=0.466 Sum_probs=37.1
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-c-C--CceeEEEecCCCccccccCCCcccceeecCCCCeEEEEe
Q 003363 159 VVPSPSGSKLLVVRNPENESPIQFELW-S-Q--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (826)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~-~-~--~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~ 226 (826)
.+.++||+.||.+.+. .++|. . + +....-.+++...+ -+...++||||+..|||+.
T Consensus 3 ~~~~~~Gk~lAi~qd~------~iEiRsa~Ddf~si~~kcqVpkD~~------PQWRkl~WSpD~tlLa~a~ 62 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQ------CIEIRSAKDDFSSIIGKCQVPKDPN------PQWRKLAWSPDCTLLAYAE 62 (282)
T ss_pred eeecCCCcEEEEEecc------EEEEEeccCCchheeEEEecCCCCC------chheEEEECCCCcEEEEEc
Confidence 4678999999998764 57776 2 2 12233344544431 1236889999999999973
No 381
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.72 E-value=0.19 Score=51.58 Aligned_cols=199 Identities=14% Similarity=0.140 Sum_probs=125.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.+..+++-|-.++++..+.+ ..+.|| ..|++.-. +++-+ +...++++|+---+++...+++..
T Consensus 152 gWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~Lklt--ltGhi-------~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLT--LTGHI-------ETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred ceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEe--ecchh-------heeeeeeecccCceEEEecCCCee
Confidence 457888889988888765433 356777 34443322 22111 112789999988888877777654
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLH 310 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~ 310 (826)
+ -|+..+.+....+..+.+-+.-....|.-...+++.++..+.|||+.+.... .+ ......+.++.+.|-.-+
T Consensus 218 K--CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l--~GH~~~V~~V~~~~~dpq-- 291 (460)
T KOG0285|consen 218 K--CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL--SGHTNPVASVMCQPTDPQ-- 291 (460)
T ss_pred E--EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe--cCCCCcceeEEeecCCCc--
Confidence 3 3444344433334444443333333443345566778899999999887644 44 334567888888886666
Q ss_pred cEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEe
Q 003363 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (826)
Q Consensus 311 ~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s 390 (826)
|+-.+ -+..|..+|+. .+.....||.+...+......|+-.. |.|
T Consensus 292 --vit~S---------------~D~tvrlWDl~----------------agkt~~tlt~hkksvral~lhP~e~~--fAS 336 (460)
T KOG0285|consen 292 --VITGS---------------HDSTVRLWDLR----------------AGKTMITLTHHKKSVRALCLHPKENL--FAS 336 (460)
T ss_pred --eEEec---------------CCceEEEeeec----------------cCceeEeeecccceeeEEecCCchhh--hhc
Confidence 77665 34478888983 55667889998888888888887654 444
Q ss_pred ccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 391 AKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 391 ~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
.. ...+..|+++-|...
T Consensus 337 as----------~dnik~w~~p~g~f~ 353 (460)
T KOG0285|consen 337 AS----------PDNIKQWKLPEGEFL 353 (460)
T ss_pred cC----------CccceeccCCccchh
Confidence 32 234777777776543
No 382
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=96.71 E-value=0.058 Score=59.02 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=54.0
Q ss_pred CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCcc
Q 003363 294 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISS 373 (826)
Q Consensus 294 ~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~ 373 (826)
+..+.-+.|.|.... |.+++ ....+|+.|+. ...+...|..+..-
T Consensus 128 ~~~vE~l~fHpTaDg----il~s~---------------a~g~v~i~D~s----------------tqk~~~el~~h~d~ 172 (1012)
T KOG1445|consen 128 NVIVECLRFHPTADG----ILASG---------------AHGSVYITDIS----------------TQKTAVELSGHTDK 172 (1012)
T ss_pred ceEEEEeecccCcCc----eEEec---------------cCceEEEEEcc----------------cCceeecccCCchh
Confidence 345556789998888 88876 22368999982 33445677777777
Q ss_pred ccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 374 ~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
+.+..||.||+.|+.. -++ .+|.++|..+.
T Consensus 173 vQSa~WseDG~llats-cKd----------kqirifDPRa~ 202 (1012)
T KOG1445|consen 173 VQSADWSEDGKLLATS-CKD----------KQIRIFDPRAS 202 (1012)
T ss_pred hhccccccCCceEeee-cCC----------cceEEeCCccC
Confidence 8999999999977654 332 56899997653
No 383
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.15 Score=49.61 Aligned_cols=223 Identities=17% Similarity=0.196 Sum_probs=111.4
Q ss_pred cEEEEeCC--CCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeE--EEEeecC
Q 003363 156 ASAVVPSP--SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLI--AYVAEEP 229 (826)
Q Consensus 156 ~~~~~~SP--dG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~i--a~~~~~~ 229 (826)
+..++|-- -|..||-.+..+ ...|| .+++-.+.... ....++| ..++|.|.+--+ |..+.+
T Consensus 59 Vwqv~wahPk~G~iLAScsYDg-----kVIiWke~~g~w~k~~e~-~~h~~SV------NsV~wapheygl~LacasSD- 125 (299)
T KOG1332|consen 59 VWKVAWAHPKFGTILASCSYDG-----KVIIWKEENGRWTKAYEH-AAHSASV------NSVAWAPHEYGLLLACASSD- 125 (299)
T ss_pred eeEEeecccccCcEeeEeecCc-----eEEEEecCCCchhhhhhh-hhhcccc------eeecccccccceEEEEeeCC-
Confidence 55556644 677787776554 45677 23333332221 1222333 788999986544 443333
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeC---
Q 003363 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPL--- 305 (826)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPD--- 305 (826)
+.-.|+.++-+++- ...+. ......+.+++|+|-
T Consensus 126 -----------------------------------------G~vsvl~~~~~g~w~t~ki~-~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 126 -----------------------------------------GKVSVLTYDSSGGWTTSKIV-FAHEIGVNSVSWAPASAP 163 (299)
T ss_pred -----------------------------------------CcEEEEEEcCCCCccchhhh-hccccccceeeecCcCCC
Confidence 23455666655332 22221 455678899999996
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCC--
Q 003363 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDG-- 383 (826)
Q Consensus 306 g~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG-- 383 (826)
|. ++-..-....+|+-..-|.| .-.||..+-+ .-...+.|..+...++..+|.|.-
T Consensus 164 g~-----~~~~~~~~~~krlvSgGcDn-~VkiW~~~~~----------------~w~~e~~l~~H~dwVRDVAwaP~~gl 221 (299)
T KOG1332|consen 164 GS-----LVDQGPAAKVKRLVSGGCDN-LVKIWKFDSD----------------SWKLERTLEGHKDWVRDVAWAPSVGL 221 (299)
T ss_pred cc-----ccccCcccccceeeccCCcc-ceeeeecCCc----------------chhhhhhhhhcchhhhhhhhccccCC
Confidence 53 11111111122222222332 1234444320 112234577788888888888864
Q ss_pred --CEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC-CcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEE
Q 003363 384 --KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 460 (826)
Q Consensus 384 --~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (826)
.+|+-.+.+. +.-||..+-+.+..+ .+.. .|+ .-+.+++||.-|..| .
T Consensus 222 ~~s~iAS~SqDg---------~viIwt~~~e~e~wk~tll~---------------~f~----~~~w~vSWS~sGn~L-a 272 (299)
T KOG1332|consen 222 PKSTIASCSQDG---------TVIIWTKDEEYEPWKKTLLE---------------EFP----DVVWRVSWSLSGNIL-A 272 (299)
T ss_pred CceeeEEecCCC---------cEEEEEecCccCcccccccc---------------cCC----cceEEEEEeccccEE-E
Confidence 2344444332 223444432221111 1111 122 133477899999855 4
Q ss_pred EEEeCCeEEEEEEECCCCcEEEecC
Q 003363 461 SSIWGSSQVIISVNVSSGELLRITP 485 (826)
Q Consensus 461 ~~~~~~~~~l~~vdl~tg~~~~lt~ 485 (826)
.+..+....||.=++ .|+.+++..
T Consensus 273 Vs~GdNkvtlwke~~-~Gkw~~v~~ 296 (299)
T KOG1332|consen 273 VSGGDNKVTLWKENV-DGKWEEVGE 296 (299)
T ss_pred EecCCcEEEEEEeCC-CCcEEEccc
Confidence 444456667787776 467777653
No 384
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.012 Score=68.87 Aligned_cols=243 Identities=16% Similarity=0.158 Sum_probs=127.5
Q ss_pred CCcccceeecCCCCe----EEEEeecCCCCCCCccCCC---CC---CCCCCccCCCCCCcceeecCCC-ccCCCccCceE
Q 003363 207 DGWFEGISWNSDETL----IAYVAEEPSPSKPTFSLGS---TK---GGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSL 275 (826)
Q Consensus 207 ~~~~~~~~wSPDg~~----ia~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l 275 (826)
+..|..+.|++-|.. ||=..+++... .|+... .. .......+..-+...+|.+.-+ ...++..+..|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~--ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIV--LYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceE--EecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcE
Confidence 345689999999988 66555555332 122110 00 0112223333344466777766 34566678999
Q ss_pred EEEEccCCceEeccCCCC----CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 276 FVININSGEVQAVKGIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 276 ~v~d~~~g~~~~l~~~~~----~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
++||+..-+ +.. +++ ...+..++|.-.-.. |.-.+. ..+...++|+.
T Consensus 142 ~iWDlnn~~-tP~--~~~~~~~~~eI~~lsWNrkvqh----ILAS~s--------------~sg~~~iWDlr-------- 192 (1049)
T KOG0307|consen 142 LIWDLNKPE-TPF--TPGSQAPPSEIKCLSWNRKVSH----ILASGS--------------PSGRAVIWDLR-------- 192 (1049)
T ss_pred EEeccCCcC-CCC--CCCCCCCcccceEeccchhhhH----HhhccC--------------CCCCceecccc--------
Confidence 999997632 222 121 113344555544443 333221 11255667763
Q ss_pred hhhhcCCCCCCcceecCCCCc--cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC-CCcccceeeeee
Q 003363 352 LELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIP 428 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~--~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~ 428 (826)
....+..++...+ .+....|.||+..-+.+..+++ ..-.|-+||+.--.. .++..
T Consensus 193 --------~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd-------~~PviqlWDlR~assP~k~~~------- 250 (1049)
T KOG0307|consen 193 --------KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD-------SAPVIQLWDLRFASSPLKILE------- 250 (1049)
T ss_pred --------CCCcccccccCCCccceeeeeeCCCCceeeeeecCCC-------CCceeEeecccccCCchhhhc-------
Confidence 3344556655533 4678999999865555555442 224567777643111 11100
Q ss_pred eeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CeeeEEEeecCCEEEEEEe
Q 003363 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSS 507 (826)
Q Consensus 429 ~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~s 507 (826)
.+..++..+.|.+.+..+++++..+ .+++.+|..||++.-=.+..+ -+....|++..-. ++.++
T Consensus 251 ------------~H~~GilslsWc~~D~~lllSsgkD--~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~-~~A~a 315 (1049)
T KOG0307|consen 251 ------------GHQRGILSLSWCPQDPRLLLSSGKD--NRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPS-VMAAA 315 (1049)
T ss_pred ------------ccccceeeeccCCCCchhhhcccCC--CCeeEecCCCceEeeecCCCCcceeeeeecCCCcc-hhhhh
Confidence 1445677889999886777776444 456666888888653333222 1233455654332 23333
Q ss_pred CCCCCCeEEE
Q 003363 508 SPVDVPQVKY 517 (826)
Q Consensus 508 ~~~~p~~l~~ 517 (826)
+.+..-+||-
T Consensus 316 sfdgkI~I~s 325 (1049)
T KOG0307|consen 316 SFDGKISIYS 325 (1049)
T ss_pred eeccceeeee
Confidence 4444444443
No 385
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.026 Score=53.49 Aligned_cols=101 Identities=24% Similarity=0.294 Sum_probs=62.3
Q ss_pred CCCCcEEEEEcCCCCCCCCccc---------------hHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHH
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSY---------------SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~---------------~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~ 653 (826)
..+..++|+|||.+.... .+| .+.+....+.||.|++.|.--...+-.... .+..+-...++
T Consensus 98 t~~~kLlVLIHGSGvVrA-GQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~--np~kyirt~ve 174 (297)
T KOG3967|consen 98 TNPQKLLVLIHGSGVVRA-GQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKR--NPQKYIRTPVE 174 (297)
T ss_pred cCccceEEEEecCceEec-chHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhccc--CcchhccchHH
Confidence 445678999999553210 111 134455668899999998642221111111 12222233455
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC
Q 003363 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (826)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~ 694 (826)
.+.-...+++.- ..+..|+++.||+||++++.+..+.|+
T Consensus 175 h~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 175 HAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 555555555543 456789999999999999999999885
No 386
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.67 E-value=0.029 Score=57.58 Aligned_cols=107 Identities=17% Similarity=0.260 Sum_probs=69.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.+..+.++++++.+|||=.....| + +.+++....+.+.... .+.|.+ ..++|||||+.||..++++
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~G--d-V~l~d~~nl~~v~~I~-aH~~~l------Aalafs~~G~llATASeKG---- 195 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSG--D-VVLFDTINLQPVNTIN-AHKGPL------AALAFSPDGTLLATASEKG---- 195 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCc--e-EEEEEcccceeeeEEE-ecCCce------eEEEECCCCCEEEEeccCc----
Confidence 457777888888899996443322 2 3445444444444332 222333 7999999999999998765
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEecc-CCCCCCccceEEEeeCCCCCcc
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVK-GIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~-~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.-|.|+.+.+|+ +.+.. |+. ...+-+.+|+||++.
T Consensus 196 ---------------------------------------TVIRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds~~--- 232 (391)
T KOG2110|consen 196 ---------------------------------------TVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDSQF--- 232 (391)
T ss_pred ---------------------------------------eEEEEEEcCCccEeeeeeCCce-eeEEEEEEECCCCCe---
Confidence 457777776664 33331 222 335668999999998
Q ss_pred EEEEEee
Q 003363 312 YLVFVGW 318 (826)
Q Consensus 312 ~lvf~~~ 318 (826)
|..+++
T Consensus 233 -L~~sS~ 238 (391)
T KOG2110|consen 233 -LAASSN 238 (391)
T ss_pred -EEEecC
Confidence 888773
No 387
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.67 E-value=0.087 Score=52.54 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=104.3
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCC---CccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 157 SAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~---~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
..-+|||||++|+-..++-+....++-+++ .....++-..+. +. ..+.|++||+.|+..- .....
T Consensus 117 GHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGp----------Hev~lm~DGrtlvvan-GGIet 185 (366)
T COG3490 117 GHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGP----------HEVTLMADGRTLVVAN-GGIET 185 (366)
T ss_pred cccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCc----------ceeEEecCCcEEEEeC-Cceec
Confidence 346899999988666555455666777773 334444443321 33 4788999999888652 22111
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCC---CCCccceEEEeeCCCCC
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP---KSLSVGQVVWAPLNEGL 309 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~---~~~~~~~~~wSPDg~~~ 309 (826)
.|.|.. -+.......+.|.++|..+|++..--..+ ..+++.++..-+||+
T Consensus 186 hpdfgR-------------------------~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-- 238 (366)
T COG3490 186 HPDFGR-------------------------TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-- 238 (366)
T ss_pred ccccCc-------------------------cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc--
Confidence 111110 12223345689999998788753211123 345788899999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC--C-----CCccccCceecCC
Q 003363 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT--E-----SISSAFFPRFSPD 382 (826)
Q Consensus 310 ~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt--~-----~~~~~~~p~~SpD 382 (826)
|+|.+.-..++ +....|.-.-. .++..+.|. + -..++.+.+...+
T Consensus 239 ---vwfgcQy~G~~--------~d~ppLvg~~~-----------------~g~~l~~~~~pee~~~~~anYigsiA~n~~ 290 (366)
T COG3490 239 ---VWFGCQYRGPR--------NDLPPLVGHFR-----------------KGEPLEFLDLPEEQTAAFANYIGSIAANRR 290 (366)
T ss_pred ---EEEEEEeeCCC--------ccCCcceeecc-----------------CCCcCcccCCCHHHHHHHHhhhhheeeccc
Confidence 88876433321 11112332222 222222221 1 1224556676666
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
-..++.+|.+. +...+||.++|...
T Consensus 291 ~glV~lTSP~G----------N~~vi~da~tG~vv 315 (366)
T COG3490 291 DGLVALTSPRG----------NRAVIWDAATGAVV 315 (366)
T ss_pred CCeEEEecCCC----------CeEEEEEcCCCcEE
Confidence 66666666542 56888999997764
No 388
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=96.65 E-value=0.59 Score=44.83 Aligned_cols=141 Identities=15% Similarity=0.157 Sum_probs=78.4
Q ss_pred CceEEEEEccCCc-eEeccCCC-----CCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccc
Q 003363 272 QPSLFVININSGE-VQAVKGIP-----KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 345 (826)
Q Consensus 272 ~~~l~v~d~~~g~-~~~l~~~~-----~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 345 (826)
...|..||+.-.. +..+...- ....+..++..|.|+- |+... .+..|.| +|+.
T Consensus 203 dktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl----l~sg~-------------~dssc~l--ydir-- 261 (350)
T KOG0641|consen 203 DKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL----LASGH-------------ADSSCML--YDIR-- 261 (350)
T ss_pred CceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce----eeecc-------------CCCceEE--EEee--
Confidence 3456667765433 33332111 1224667889999995 54332 1122344 4551
Q ss_pred cchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceee
Q 003363 346 KSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425 (826)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 425 (826)
.+..+++...+...+...+|||-.-+++.-+.+ ..|.+-|++++-...+..-
T Consensus 262 --------------g~r~iq~f~phsadir~vrfsp~a~yllt~syd-----------~~ikltdlqgdla~el~~~--- 313 (350)
T KOG0641|consen 262 --------------GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD-----------MKIKLTDLQGDLAHELPIM--- 313 (350)
T ss_pred --------------CCceeeeeCCCccceeEEEeCCCceEEEEeccc-----------ceEEEeecccchhhcCceE---
Confidence 344466777778889999999998888766644 4588888887554433321
Q ss_pred eeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003363 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 426 ~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
++...++. .....|.|..- -+++++.+....||.++
T Consensus 314 ---vv~ehkdk---------~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 314 ---VVAEHKDK---------AIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred ---EEEeccCc---------eEEEEecCccc-eeeeccCcceEEEeccC
Confidence 11111222 22456877653 23344445556677654
No 389
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.64 E-value=0.057 Score=55.62 Aligned_cols=152 Identities=12% Similarity=0.087 Sum_probs=86.9
Q ss_pred ccCCCccCceEEEEEccCCceEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEc
Q 003363 265 ETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (826)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (826)
..+++.-...|++|...+|..+.=. -+...-++.+.+|||.-+. +++++. -+..|.++|+
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~----vfaScS--------------~DgsIrIWDi 287 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG----VFASCS--------------CDGSIRIWDI 287 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc----eEEeee--------------cCceEEEEEe
Confidence 3444445678999988887643211 0224457889999999998 777652 1225777777
Q ss_pred ccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccc
Q 003363 343 SLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 422 (826)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 422 (826)
... ..........+.+.+.-..|+.+-..||+...+ ..+.+||+..-+..
T Consensus 288 Rs~--------------~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd-----------Gt~~iwDLR~~~~~----- 337 (440)
T KOG0302|consen 288 RSG--------------PKKAAVSTKAHNSDVNVISWNRREPLLASGGDD-----------GTLSIWDLRQFKSG----- 337 (440)
T ss_pred cCC--------------CccceeEeeccCCceeeEEccCCcceeeecCCC-----------ceEEEEEhhhccCC-----
Confidence 321 011222224456677888999887766654433 35778887652221
Q ss_pred eeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 423 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
..+..+.. +..-+..+.|+|....++..+..+....||-+.+
T Consensus 338 --~pVA~fk~---------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 338 --QPVATFKY---------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred --CcceeEEe---------ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 01111111 1123557889997777776665555555554443
No 390
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.63 E-value=0.03 Score=63.29 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=56.1
Q ss_pred CceEEEEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 335 CALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
..|..+|. .+.. ++.+..+...+....|||||++|+-.+.+ ..|..||+++
T Consensus 556 f~I~vvD~-----------------~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD-----------~tIr~wDlpt 607 (910)
T KOG1539|consen 556 FSIRVVDV-----------------VTRKVVREFWGHGNRITDMTFSPDGRWLISASMD-----------STIRTWDLPT 607 (910)
T ss_pred eeEEEEEc-----------------hhhhhhHHhhccccceeeeEeCCCCcEEEEeecC-----------CcEEEEeccC
Confidence 36888887 5544 45555677778999999999999988876 3599999999
Q ss_pred CCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEE
Q 003363 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (826)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (826)
+... +.+..+ .-...+.+||+|..|..+..
T Consensus 608 ~~lI----------D~~~vd----------~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 608 GTLI----------DGLLVD----------SPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred ccee----------eeEecC----------CcceeeEECCCCCEEEEEEe
Confidence 7642 111111 11236789999996654433
No 391
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.60 E-value=0.12 Score=52.45 Aligned_cols=171 Identities=19% Similarity=0.278 Sum_probs=87.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
..++..+|.||.++|+.+.+. ...++++...|+..+.+.+.+ .+. .+++++.-+|+ ++.+.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~---~~~i~els~~G~vlr~i~l~g--~~D------~EgI~y~g~~~-~vl~~E------ 83 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDE---PGEIYELSLDGKVLRRIPLDG--FGD------YEGITYLGNGR-YVLSEE------ 83 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETT---TTEEEEEETT--EEEEEE-SS---SS------EEEEEE-STTE-EEEEET------
T ss_pred CCccccEEcCCCCeEEEEECC---CCEEEEEcCCCCEEEEEeCCC--CCC------ceeEEEECCCE-EEEEEc------
Confidence 348899999999999888664 457888887677777776643 111 27888887775 333433
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEcc--CCc-----eEecc-CCC--CCCccceEEEe
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ--SGE-----VQAVK-GIP--KSLSVGQVVWA 303 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~--~g~-----~~~l~-~~~--~~~~~~~~~wS 303 (826)
+...|+++++. +.. ++.++ +.+ ++.....++|.
T Consensus 84 -------------------------------------r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D 126 (248)
T PF06977_consen 84 -------------------------------------RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD 126 (248)
T ss_dssp -------------------------------------TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE
T ss_pred -------------------------------------CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc
Confidence 23577777763 222 12221 233 34457789999
Q ss_pred eCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCC
Q 003363 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDG 383 (826)
Q Consensus 304 PDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG 383 (826)
|.++. ++.+. +..| ..||.++..... ...... ...................+.|..
T Consensus 127 ~~~~~----L~v~k-E~~P------------~~l~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~d~S~l~~~p~t 182 (248)
T PF06977_consen 127 PKTNR----LFVAK-ERKP------------KRLYEVNGFPGG---FDLFVS----DDQDLDDDKLFVRDLSGLSYDPRT 182 (248)
T ss_dssp TTTTE----EEEEE-ESSS------------EEEEEEESTT-S---S--EEE----E-HHHH-HT--SS---EEEEETTT
T ss_pred CCCCE----EEEEe-CCCC------------hhhEEEccccCc---cceeec----cccccccccceeccccceEEcCCC
Confidence 99887 77654 3333 246666531000 000000 000000000011224556788888
Q ss_pred CEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 384 ~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
..|+.+|... ..|..+|..+
T Consensus 183 ~~lliLS~es----------~~l~~~d~~G 202 (248)
T PF06977_consen 183 GHLLILSDES----------RLLLELDRQG 202 (248)
T ss_dssp TEEEEEETTT----------TEEEEE-TT-
T ss_pred CeEEEEECCC----------CeEEEECCCC
Confidence 8888888764 4577787443
No 392
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.55 E-value=0.02 Score=64.16 Aligned_cols=146 Identities=14% Similarity=0.181 Sum_probs=84.6
Q ss_pred hcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCc
Q 003363 121 LANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTV 200 (826)
Q Consensus 121 ~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 200 (826)
.+++++..+-.+++........ ..+ .-..+..++|||.-... |.+..++| ++++|+-.+..+-..--...
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~t--~~~----nSESiRDV~fsp~~~~~-F~s~~dsG---~lqlWDlRqp~r~~~k~~AH 219 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKST--FRS----NSESIRDVKFSPGYGNK-FASIHDSG---YLQLWDLRQPDRCEKKLTAH 219 (839)
T ss_pred EecCCCceEEEEeeeccccccc--ccc----cchhhhceeeccCCCce-EEEecCCc---eEEEeeccCchhHHHHhhcc
Confidence 3456677787888754433222 112 11358899999965443 33333334 55555432222211111123
Q ss_pred cccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEc
Q 003363 201 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 280 (826)
Q Consensus 201 ~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 280 (826)
.|.| ..+.|+|++.+||... ++..+.+||.
T Consensus 220 ~GpV------~c~nwhPnr~~lATGG--------------------------------------------RDK~vkiWd~ 249 (839)
T KOG0269|consen 220 NGPV------LCLNWHPNREWLATGG--------------------------------------------RDKMVKIWDM 249 (839)
T ss_pred cCce------EEEeecCCCceeeecC--------------------------------------------CCccEEEEec
Confidence 3444 7899999999999854 3356888888
Q ss_pred cCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEc
Q 003363 281 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (826)
Q Consensus 281 ~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (826)
.+++...+-.+..-..++.+.|-|+-... |+..+- -.+..|+++|+
T Consensus 250 t~~~~~~~~tInTiapv~rVkWRP~~~~h---LAtcsm-------------v~dtsV~VWDv 295 (839)
T KOG0269|consen 250 TDSRAKPKHTINTIAPVGRVKWRPARSYH---LATCSM-------------VVDTSVHVWDV 295 (839)
T ss_pred cCCCccceeEEeecceeeeeeeccCccch---hhhhhc-------------cccceEEEEee
Confidence 77665443213444578899999998873 444331 13347888887
No 393
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.54 E-value=0.038 Score=62.01 Aligned_cols=144 Identities=11% Similarity=0.053 Sum_probs=94.8
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
++..|..||+...+-+... .....++.++.|||--.. ..+...+ .+.|-.+|+..
T Consensus 154 QDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~----~F~s~~d--------------sG~lqlWDlRq------ 208 (839)
T KOG0269|consen 154 QDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGN----KFASIHD--------------SGYLQLWDLRQ------ 208 (839)
T ss_pred CCceEEEEeeecccccccc-cccchhhhceeeccCCCc----eEEEecC--------------CceEEEeeccC------
Confidence 4567888998877665552 223457889999995543 4333322 22566777731
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
-..-..+++.+.+.+....|+|++.+||... ++ ..+.+||+.++....+. ....+.
T Consensus 209 ---------p~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RD----------K~vkiWd~t~~~~~~~~-tInTia--- 264 (839)
T KOG0269|consen 209 ---------PDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RD----------KMVKIWDMTDSRAKPKH-TINTIA--- 264 (839)
T ss_pred ---------chhHHHHhhcccCceEEEeecCCCceeeecC-CC----------ccEEEEeccCCCcccee-EEeecc---
Confidence 2233578899999999999999999998655 32 45788888765543221 111111
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 477 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~t 477 (826)
.+..+.|-|+-.+.+.+.+-..+..++++|+..
T Consensus 265 --------------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 265 --------------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred --------------eeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 245778999988777776666778888888754
No 394
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.52 E-value=0.33 Score=51.52 Aligned_cols=205 Identities=13% Similarity=0.126 Sum_probs=103.1
Q ss_pred cccEEEEeCCCCC-eEEEEecCCCCCCeEEEEecCC-ceeEEEecCCCccccccCCCcccceeecCCCC-eEEEEeecCC
Q 003363 154 TGASAVVPSPSGS-KLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEEPS 230 (826)
Q Consensus 154 ~~~~~~~~SPdG~-~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~-~ia~~~~~~~ 230 (826)
..++..+|.|.-. +++.+ ....|...+|.+...+ ....+. +-....+.| .++.|||-.. +|+..+.+++
T Consensus 187 ~Rit~l~fHPt~~~~lva~-GdK~G~VG~Wn~~~~~~d~d~v~-~f~~hs~~V------s~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAV-GDKGGQVGLWNFGTQEKDKDGVY-LFTPHSGPV------SGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceEEEEecccCcceEEEE-ccCCCcEEEEecCCCCCccCceE-EeccCCccc------cceEecCCChhheeeeccCce
Confidence 4588899999987 55444 3333554555553111 111111 111122233 8999999765 5555666666
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc--eEeccCCCCCCccceEEEeeCCCC
Q 003363 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~--~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
.+...+......+.....+...|.....+.-+-+..+.+..-..+-+||+.++. ...+ .-..-.+.++++.|--.+
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~--~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL--RLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh--hhhhcccceeecCCCCch
Confidence 554333321111111111222222222222221222222222345566665443 3333 222337889999998887
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc--ceecCCCCccccCceecCCCCEE
Q 003363 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 309 ~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~Lt~~~~~~~~p~~SpDG~~l 386 (826)
+..++. .+....++|+..- .... ..-...+...+.+..|||+|-.|
T Consensus 337 ----~laT~s--------------~D~T~kIWD~R~l--------------~~K~sp~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 337 ----FLATAS--------------LDQTAKIWDLRQL--------------RGKASPFLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred ----heeecc--------------cCcceeeeehhhh--------------cCCCCcceecccccceeeeeEEcCCCCce
Confidence 544441 1224556666311 1111 23334566778999999999888
Q ss_pred EEEeccCCCCCCCCcccceEEEEeC
Q 003363 387 VFLSAKSSVDSGAHSATDSLHRIDW 411 (826)
Q Consensus 387 ~f~s~~~~~~~g~~~~~~~l~~~d~ 411 (826)
+....+ +.|.++|-
T Consensus 385 ~TT~~D-----------~~IRv~ds 398 (498)
T KOG4328|consen 385 LTTCQD-----------NEIRVFDS 398 (498)
T ss_pred EeeccC-----------CceEEeec
Confidence 876655 45888875
No 395
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.45 E-value=0.085 Score=52.35 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=102.9
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCc--cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHH
Q 003363 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDV 655 (826)
Q Consensus 578 ~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~ 655 (826)
.|+..|+ ++.. ||.+-||.+..... .|....+.|+++||.|++.-|.-+-.+.. ........+
T Consensus 8 ~wvl~P~-----~P~g-vihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~---------~A~~~~~~f 72 (250)
T PF07082_consen 8 SWVLIPP-----RPKG-VIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQA---------IAREVWERF 72 (250)
T ss_pred cEEEeCC-----CCCE-EEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHH---------HHHHHHHHH
Confidence 3566665 2334 55555665443333 67888999999999999999865322211 111224455
Q ss_pred HHHHHHHHHcCCCCCC--cEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccCCCCCCchhhhhccCcCCcc
Q 003363 656 LTAIDHVIDMGLANPS--KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 733 (826)
Q Consensus 656 ~~~i~~l~~~~~~d~~--rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (826)
..+++.+.+...++.. ++.=+|||+|+-+-+.+...++..-++-++++ +-|.. ....++. .+.+.......
T Consensus 73 ~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS-FNN~~---a~~aIP~---~~~l~~~l~~E 145 (250)
T PF07082_consen 73 ERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS-FNNFP---ADEAIPL---LEQLAPALRLE 145 (250)
T ss_pred HHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEe-cCChH---HHhhCch---HhhhccccccC
Confidence 6666666665444433 67889999999998877765543333333332 11110 0001111 11111111111
Q ss_pred CCCCCChhhHHHHhhcCcccccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCC-CEEEEEeCCCCCC
Q 003363 734 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHG 803 (826)
Q Consensus 734 ~~~~~~~~~~~~~~~~sp~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~p~~~H~ 803 (826)
| .|.+++...+.+.+- .....|+|-=.+|.+ +++..+.+.|+.+.. -++....+| .|-
T Consensus 146 F--~PsP~ET~~li~~~Y------~~~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 146 F--TPSPEETRRLIRESY------QVRRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred c--cCCHHHHHHHHHHhc------CCccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 2 233343333322211 123467777777765 688888898887633 356666764 674
No 396
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=96.43 E-value=0.16 Score=53.69 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=86.5
Q ss_pred cCCCccCceEEEEEccCCce--Eecc----CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEE
Q 003363 266 TYAGKRQPSLFVININSGEV--QAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (826)
Q Consensus 266 ~~~~~~~~~l~v~d~~~g~~--~~l~----~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~ 339 (826)
++++.....|.+||+..... +.+. -......+.+++|.|--+. +.-.. ..++.|.+
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~----lF~sv--------------~dd~~L~i 254 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED----LFGSV--------------GDDGKLMI 254 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh----hheee--------------cCCCeEEE
Confidence 33344557788999864322 1110 0122346778999997776 53322 13347888
Q ss_pred EEcccccchhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCC
Q 003363 340 VRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (826)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 418 (826)
+|+.. .+.+ ......+.+.+...+|+|-+..|+-+... ..+|.+||+..=....
T Consensus 255 wD~R~---------------~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~----------D~tV~LwDlRnL~~~l 309 (422)
T KOG0264|consen 255 WDTRS---------------NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA----------DKTVALWDLRNLNKPL 309 (422)
T ss_pred EEcCC---------------CCCCCcccccccCCceeEEEeCCCCCceEEeccC----------CCcEEEeechhcccCc
Confidence 99831 0122 22333456678889999977766544432 2568999986522211
Q ss_pred cccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003363 419 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (826)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl 475 (826)
-+ |.+ +...+..+.|||+...++.++..+++..+|-++-
T Consensus 310 h~-----------------~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 310 HT-----------------FEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred ee-----------------ccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 00 000 1224557889999999988887667777775553
No 397
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=96.42 E-value=0.29 Score=50.76 Aligned_cols=99 Identities=12% Similarity=0.146 Sum_probs=64.0
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
-+..|.+||+.+|....- ....-....+..+|+.+. |+..+ ....|.++|...
T Consensus 279 wDHTIk~WDletg~~~~~--~~~~ksl~~i~~~~~~~L----l~~gs---------------sdr~irl~DPR~------ 331 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKST--LTTNKSLNCISYSPLSKL----LASGS---------------SDRHIRLWDPRT------ 331 (423)
T ss_pred ccceEEEEEeecccceee--eecCcceeEeecccccce----eeecC---------------CCCceeecCCCC------
Confidence 347899999998765432 233445667889998886 65544 122677888632
Q ss_pred hhhhhcCCCCCCc--ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 351 ELELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 351 ~~~~~~~~~~~~~--~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
.++. ..++..+...+....|||...+++....-+ +.+.+||..+..
T Consensus 332 ---------~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D----------~t~klWDvRS~k 379 (423)
T KOG0313|consen 332 ---------GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD----------NTVKLWDVRSTK 379 (423)
T ss_pred ---------CCCceeEEeeecchhhhhheecCCCCceEEEEEecC----------CeEEEEEeccCC
Confidence 2222 356778888899999999887654333222 457778876633
No 398
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.37 E-value=0.02 Score=61.83 Aligned_cols=127 Identities=20% Similarity=0.262 Sum_probs=84.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcC-CCCCCCCccc--hHHHHHHHHCCcEEEEECCCCCCCCchhhhh------cCCCC
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHG-GPHSVSLSSY--SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ------SLPGK 646 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HG-g~~~~~~~~~--~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~------~~~~~ 646 (826)
..=++|.+..+. ....|+.|+|-| |+....+... ....+...+.|-.|+..++|- ||.+..- .+..-
T Consensus 71 ~Qq~~y~n~~~~-~~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~~~~st~nlk~L 146 (514)
T KOG2182|consen 71 FQQRFYNNNQWA-KPGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPIGDLSTSNLKYL 146 (514)
T ss_pred hhhheeeccccc-cCCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCCCCCcccchhhh
Confidence 344455555432 345688888877 4433211111 134556678899999999998 5644210 11111
Q ss_pred CCcchHHHHHHHHHHHHHcC-CCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCcc
Q 003363 647 VGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (826)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~-~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 706 (826)
...+.+.|+...|+.+..+. .-+..++..+|.||-|.+++|+=.++|+++.++|+.++.+
T Consensus 147 Ss~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 147 SSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 12345788888888877764 4455699999999999999999999999999888877643
No 399
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=96.32 E-value=0.03 Score=72.50 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=65.0
Q ss_pred CcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q 003363 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (826)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (826)
.|.++++||.++. ...|......|. .++.|+.++.+|.+. . ......++++.+.+...+... ....
T Consensus 1068 ~~~l~~lh~~~g~--~~~~~~l~~~l~-~~~~v~~~~~~g~~~---~-------~~~~~~l~~la~~~~~~i~~~-~~~~ 1133 (1296)
T PRK10252 1068 GPTLFCFHPASGF--AWQFSVLSRYLD-PQWSIYGIQSPRPDG---P-------MQTATSLDEVCEAHLATLLEQ-QPHG 1133 (1296)
T ss_pred CCCeEEecCCCCc--hHHHHHHHHhcC-CCCcEEEEECCCCCC---C-------CCCCCCHHHHHHHHHHHHHhh-CCCC
Confidence 3668999997655 346766776664 469999999998432 1 011123555544433333321 1235
Q ss_pred cEEEEEecchHHHHHHHHHh---CCCceeEEEecCC
Q 003363 672 KVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNP 704 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~---~p~~~~a~v~~~p 704 (826)
++.++|||+||.++..++.+ .++.+..+++..+
T Consensus 1134 p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1134 PYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred CEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 79999999999999999875 4677877777664
No 400
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.27 Score=56.42 Aligned_cols=143 Identities=12% Similarity=0.153 Sum_probs=90.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
+.+-..+|.|.--+|+..-..+ ++++|+ .+.....+ ....|.| .++.|.|++-..+...++...
T Consensus 10 sRvKglsFHP~rPwILtslHsG-----~IQlWDYRM~tli~rF---deHdGpV------Rgv~FH~~qplFVSGGDDykI 75 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSG-----VIQLWDYRMGTLIDRF---DEHDGPV------RGVDFHPTQPLFVSGGDDYKI 75 (1202)
T ss_pred ccccceecCCCCCEEEEeecCc-----eeeeehhhhhhHHhhh---hccCCcc------ceeeecCCCCeEEecCCccEE
Confidence 4577789999988887654433 778884 33332222 2333444 899999998754444444333
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
..|+.......-....|..++....|....-..++...+..|.+|+-.+++...+. +.....+-...|.|....
T Consensus 76 --kVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAqFhptEDl--- 149 (1202)
T KOG0292|consen 76 --KVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQFHPTEDL--- 149 (1202)
T ss_pred --EEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeeccCCccce---
Confidence 34443333344455566677765555554444555667789999999998866552 444456777889998886
Q ss_pred EEEEEe
Q 003363 312 YLVFVG 317 (826)
Q Consensus 312 ~lvf~~ 317 (826)
||..+
T Consensus 150 -IVSaS 154 (1202)
T KOG0292|consen 150 -IVSAS 154 (1202)
T ss_pred -EEEec
Confidence 76665
No 401
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.24 E-value=0.021 Score=59.86 Aligned_cols=89 Identities=22% Similarity=0.242 Sum_probs=61.7
Q ss_pred HHCCcEEEEECCCCCC---CCchhhhhc---CCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHh
Q 003363 618 SSVGYSLLIVNYRGSL---GFGEEALQS---LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691 (826)
Q Consensus 618 a~~G~~Vl~~d~rG~~---g~G~~~~~~---~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~ 691 (826)
.+.+..++-++.|-.| -+|...... +..-...+.+.|....+.+|++.......+|.++|.|+||.+++|+=.+
T Consensus 108 p~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlK 187 (492)
T KOG2183|consen 108 PELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLK 187 (492)
T ss_pred HhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhc
Confidence 4567788888888622 123221110 1111224557899999999988765667899999999999999999999
Q ss_pred CCCceeEEEe-cCCcc
Q 003363 692 APDKFVAAAA-RNPLC 706 (826)
Q Consensus 692 ~p~~~~a~v~-~~p~~ 706 (826)
+|..+.++.+ .+|+.
T Consensus 188 YPHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 188 YPHIVLGALAASAPVL 203 (492)
T ss_pred ChhhhhhhhhccCceE
Confidence 9998776654 45544
No 402
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.22 E-value=0.55 Score=47.63 Aligned_cols=176 Identities=13% Similarity=0.196 Sum_probs=86.4
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
++++|.||.++|+.+.+.+ ..|+.++.++.-++.+.
T Consensus 25 SGLTy~pd~~tLfaV~d~~-------------------------------------------~~i~els~~G~vlr~i~- 60 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEP-------------------------------------------GEIYELSLDGKVLRRIP- 60 (248)
T ss_dssp EEEEEETTTTEEEEEETTT-------------------------------------------TEEEEEETT--EEEEEE-
T ss_pred cccEEcCCCCeEEEEECCC-------------------------------------------CEEEEEcCCCCEEEEEe-
Confidence 8999999999998886643 67899998655455553
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecC--
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-- 368 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-- 368 (826)
..+......+++.-+|+ ++.+. .|...|+.++++... ........+.++
T Consensus 61 l~g~~D~EgI~y~g~~~-----~vl~~--------------Er~~~L~~~~~~~~~----------~~~~~~~~~~~~l~ 111 (248)
T PF06977_consen 61 LDGFGDYEGITYLGNGR-----YVLSE--------------ERDQRLYIFTIDDDT----------TSLDRADVQKISLG 111 (248)
T ss_dssp -SS-SSEEEEEE-STTE-----EEEEE--------------TTTTEEEEEEE--------------TT--EEEEEEEE--
T ss_pred CCCCCCceeEEEECCCE-----EEEEE--------------cCCCcEEEEEEeccc----------cccchhhceEEecc
Confidence 23333455777876665 44443 244478888773210 000011112222
Q ss_pred ---CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCC
Q 003363 369 ---ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (826)
Q Consensus 369 ---~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 445 (826)
.++......+|.|.++.|+....+. ...|+.++...+... +. +.......... .....
T Consensus 112 ~~~~~N~G~EGla~D~~~~~L~v~kE~~---------P~~l~~~~~~~~~~~-~~-----~~~~~~~~~~~----~~~~d 172 (248)
T PF06977_consen 112 FPNKGNKGFEGLAYDPKTNRLFVAKERK---------PKRLYEVNGFPGGFD-LF-----VSDDQDLDDDK----LFVRD 172 (248)
T ss_dssp -S---SS--EEEEEETTTTEEEEEEESS---------SEEEEEEESTT-SS---E-----EEE-HHHH-HT------SS-
T ss_pred cccCCCcceEEEEEcCCCCEEEEEeCCC---------ChhhEEEccccCccc-ee-----ecccccccccc----ceecc
Confidence 1233367899999999988776553 245777765221110 00 00000000000 01123
Q ss_pred CCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 446 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
+..+.+.|....|++.+. ....|..+|. +|++.
T Consensus 173 ~S~l~~~p~t~~lliLS~--es~~l~~~d~-~G~~~ 205 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSD--ESRLLLELDR-QGRVV 205 (248)
T ss_dssp --EEEEETTTTEEEEEET--TTTEEEEE-T-T--EE
T ss_pred ccceEEcCCCCeEEEEEC--CCCeEEEECC-CCCEE
Confidence 456667777777777753 3345677785 45543
No 403
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=96.22 E-value=0.077 Score=56.52 Aligned_cols=178 Identities=14% Similarity=0.153 Sum_probs=99.8
Q ss_pred EEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCce
Q 003363 111 AMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL 190 (826)
Q Consensus 111 v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~ 190 (826)
+.|.+...-+++..-...|.+..+. .+.....|+... ...+....+||.-+.|+.+...+ | ...+|+....
T Consensus 127 v~YN~~DeyiAsvs~gGdiiih~~~-t~~~tt~f~~~s----gqsvRll~ys~skr~lL~~asd~-G---~VtlwDv~g~ 197 (673)
T KOG4378|consen 127 VDYNNTDEYIASVSDGGDIIIHGTK-TKQKTTTFTIDS----GQSVRLLRYSPSKRFLLSIASDK-G---AVTLWDVQGM 197 (673)
T ss_pred EEecCCcceeEEeccCCcEEEEecc-cCccccceecCC----CCeEEEeecccccceeeEeeccC-C---eEEEEeccCC
Confidence 3444444444544445555554432 222333443331 02356889999999998776544 3 5677743323
Q ss_pred eEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCc
Q 003363 191 EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGK 270 (826)
Q Consensus 191 ~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~ 270 (826)
....+....... .-.++.|||-...|+....
T Consensus 198 sp~~~~~~~HsA------P~~gicfspsne~l~vsVG------------------------------------------- 228 (673)
T KOG4378|consen 198 SPIFHASEAHSA------PCRGICFSPSNEALLVSVG------------------------------------------- 228 (673)
T ss_pred CcccchhhhccC------CcCcceecCCccceEEEec-------------------------------------------
Confidence 333332211111 1268999998776654311
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
-+..|+++|+...+...- ...+.....++|+|+|-. |+... ....|+.||+..
T Consensus 229 ~Dkki~~yD~~s~~s~~~--l~y~~Plstvaf~~~G~~----L~aG~---------------s~G~~i~YD~R~------ 281 (673)
T KOG4378|consen 229 YDKKINIYDIRSQASTDR--LTYSHPLSTVAFSECGTY----LCAGN---------------SKGELIAYDMRS------ 281 (673)
T ss_pred ccceEEEeecccccccce--eeecCCcceeeecCCceE----EEeec---------------CCceEEEEeccc------
Confidence 124688899876543322 233445678999999997 76544 334799999842
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCC
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPD 382 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD 382 (826)
....+..+..+...+...+|-|-
T Consensus 282 ---------~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 282 ---------TKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ---------CCCCceEeeecccceeEEEeeec
Confidence 22334555666666766666443
No 404
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.21 E-value=1.3 Score=45.00 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=65.1
Q ss_pred CceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 335 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
++|-++|+... ..+.+..+..+...+...+.+-+|..||-.|.+. .=|.++|..+|
T Consensus 159 GqvQi~dL~~~--------------~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG----------TLIRIFdt~~g 214 (346)
T KOG2111|consen 159 GQVQIVDLAST--------------KPNAPSIINAHDSDIACVALNLQGTLVATASTKG----------TLIRIFDTEDG 214 (346)
T ss_pred ceEEEEEhhhc--------------CcCCceEEEcccCceeEEEEcCCccEEEEeccCc----------EEEEEEEcCCC
Confidence 47888888210 1223456667777888899999999999888763 34677887776
Q ss_pred CCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003363 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (826)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~ 476 (826)
+..+.... ..+ ...+..++||||+.+|.+ ++..++.++|.+...
T Consensus 215 ~~l~E~RR----------G~d-------~A~iy~iaFSp~~s~Lav-sSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 215 TLLQELRR----------GVD-------RADIYCIAFSPNSSWLAV-SSDKGTLHIFSLRDT 258 (346)
T ss_pred cEeeeeec----------CCc-------hheEEEEEeCCCccEEEE-EcCCCeEEEEEeecC
Confidence 65321100 000 012346789999987655 456789999988653
No 405
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.017 Score=60.04 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=70.1
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHHCCc--EEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~--~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (826)
...-++||+||..... ...-...++.....|+ ..+.+-.+-.+ .-+......+-..+...++...+++|.+...
T Consensus 114 ~~k~vlvFvHGfNntf-~dav~R~aqI~~d~g~~~~pVvFSWPS~g---~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~ 189 (377)
T COG4782 114 SAKTVLVFVHGFNNTF-EDAVYRTAQIVHDSGNDGVPVVFSWPSRG---SLLGYNYDRESTNYSRPALERLLRYLATDKP 189 (377)
T ss_pred CCCeEEEEEcccCCch-hHHHHHHHHHHhhcCCCcceEEEEcCCCC---eeeecccchhhhhhhHHHHHHHHHHHHhCCC
Confidence 4567999999955432 2233345565555554 44555554311 1111111112223346788889999988753
Q ss_pred CCCCcEEEEEecchHHHHHHHHHh--------CCCceeEEEecCCccch
Q 003363 668 ANPSKVTVVGGSHGGFLTTHLIGQ--------APDKFVAAAARNPLCNL 708 (826)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~a~~--------~p~~~~a~v~~~p~~~~ 708 (826)
..+|.|++||||.++++.++-+ .+.+|+-+|+.+|-.|.
T Consensus 190 --~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 190 --VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred --CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 4789999999999999887643 13467788888886654
No 406
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=96.18 E-value=0.011 Score=51.05 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=49.0
Q ss_pred CCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003363 759 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 822 (826)
Q Consensus 759 ~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~ 822 (826)
..|+|++.++.|+..|++.++.+.+.|.+ .+++.+++.||+... ....-..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYA-GGSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceec-CCChHHHHHHHHHHH
Confidence 58999999999999999999999999976 589999999999774 222355667777775
No 407
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.11 E-value=0.18 Score=53.44 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=36.8
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
.+...+.||||++||+. +..+.+.|| ++.+..+.+ .+..|.| .++.|=-.-..++..+.+.
T Consensus 204 eil~~avS~Dgkylatg-----g~d~~v~Iw~~~t~ehv~~~---~ghr~~V------~~L~fr~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATG-----GRDRHVQIWDCDTLEHVKVF---KGHRGAV------SSLAFRKGTSELYSASADR 266 (479)
T ss_pred eeEEEEEcCCCcEEEec-----CCCceEEEecCcccchhhcc---cccccce------eeeeeecCccceeeeecCC
Confidence 47789999999999984 555688899 344544442 2333444 5555544333444444443
No 408
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.09 E-value=0.41 Score=54.22 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=56.3
Q ss_pred ceEEEEEccC-----CceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccc
Q 003363 273 PSLFVININS-----GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 273 ~~l~v~d~~~-----g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (826)
+.+-|+|..+ .++... ++-.-.+..+..||||++ ++..+. ....+-++|+.....
T Consensus 296 n~V~VID~~t~~~~~~~v~~y--IPVGKsPHGV~vSPDGky----lyVank--------------lS~tVSVIDv~k~k~ 355 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRY--VPVPKNPHGVNTSPDGKY----FIANGK--------------LSPTVTVIDVRKLDD 355 (635)
T ss_pred CEEEEEECCccccCCcceEEE--EECCCCccceEECCCCCE----EEEeCC--------------CCCcEEEEEChhhhh
Confidence 5688899877 244443 455556778999999997 766552 223677888721100
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
...+..+.......++.-+. ....-.|.+||+ +|++--- .+++..||+.+
T Consensus 356 ----~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~--aytslf~---------dsqv~kwn~~~ 405 (635)
T PRK02888 356 ----LFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGN--AYTTLFL---------DSQIVKWNIEA 405 (635)
T ss_pred ----hhhccCCccceEEEeeccCC-CcceEEECCCCC--EEEeEee---------cceeEEEehHH
Confidence 00000000011111222122 234457888886 5665431 25788898765
No 409
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.07 E-value=3.1 Score=49.98 Aligned_cols=88 Identities=8% Similarity=0.072 Sum_probs=49.6
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..|.|||.+ |..... +.+.......++|-|.|.. |+.... .....+|..+..++
T Consensus 222 RkirV~drE-g~Lns~-se~~~~l~~~LsWkPsgs~----iA~iq~------------~~sd~~IvffErNG-------- 275 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNST-SEPVEGLQHSLSWKPSGSL----IAAIQC------------KTSDSDIVFFERNG-------- 275 (1265)
T ss_pred eeEEEeccc-chhhcc-cCcccccccceeecCCCCe----Eeeeee------------cCCCCcEEEEecCC--------
Confidence 568888876 544433 1333445568999999998 776552 22223455554310
Q ss_pred hhhcCCCCCCcce-ecCCCCccccCceecCCCCEEEEEecc
Q 003363 353 ELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 353 ~~~~~~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
..-|+.+ +.......+....|+.++..|+.....
T Consensus 276 ------L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~ 310 (1265)
T KOG1920|consen 276 ------LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSN 310 (1265)
T ss_pred ------ccccccccCCcccccchheeeecCCCCceeeeecc
Confidence 0112111 112222237889999999988875544
No 410
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.06 E-value=0.054 Score=57.35 Aligned_cols=219 Identities=14% Similarity=0.083 Sum_probs=116.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
+-+...+-+|+|.+|+-.... +.-.+|++ ..|....+.. .....| ..+.||-||..|+..+.+.....
T Consensus 82 g~v~al~s~n~G~~l~ag~i~--g~lYlWel-ssG~LL~v~~---aHYQ~I------TcL~fs~dgs~iiTgskDg~V~v 149 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTIS--GNLYLWEL-SSGILLNVLS---AHYQSI------TCLKFSDDGSHIITGSKDGAVLV 149 (476)
T ss_pred cceeeeecCCCceEEEeeccc--CcEEEEEe-ccccHHHHHH---hhccce------eEEEEeCCCcEEEecCCCccEEE
Confidence 447888889999988643111 22222322 3454433331 221222 68889999998888777765443
Q ss_pred CCccC-------CCCCCCCCCccCCCCCCcce--eecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEee
Q 003363 234 PTFSL-------GSTKGGSSDKDCNSWKGQGD--WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 304 (826)
Q Consensus 234 ~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP 304 (826)
|.... ...+....+.+|...+.+.. +.+--+..++...+..+.+||+.+|.+-.- ..-+.....++..|
T Consensus 150 W~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt--i~fp~si~av~lDp 227 (476)
T KOG0646|consen 150 WLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT--ITFPSSIKAVALDP 227 (476)
T ss_pred EEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE--EecCCcceeEEEcc
Confidence 22210 01111223333333222111 111113445555678899999999865322 33445667889999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCc--cccCceecCC
Q 003363 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPD 382 (826)
Q Consensus 305 Dg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~--~~~~p~~SpD 382 (826)
-++ .+|.+.+ .+.||..++-.-+.+........-.....+...+.++.+ .+...+.|-|
T Consensus 228 ae~-----~~yiGt~--------------~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D 288 (476)
T KOG0646|consen 228 AER-----VVYIGTE--------------EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD 288 (476)
T ss_pred ccc-----EEEecCC--------------cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC
Confidence 777 5666632 335666655211111110000000012233455566655 6788999999
Q ss_pred CCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 383 G~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
|+.|+-.+.+ ..+.+||..+.+.
T Consensus 289 gtlLlSGd~d-----------g~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 289 GTLLLSGDED-----------GKVCVWDIYSKQC 311 (476)
T ss_pred ccEEEeeCCC-----------CCEEEEecchHHH
Confidence 9987754443 4588888777554
No 411
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.48 Score=54.45 Aligned_cols=204 Identities=11% Similarity=0.070 Sum_probs=117.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
+.+..+.|.|++-.+ ++. |....+.+|.-.+.+-++.+. +.-+ .+....|.+.=-+|+..+++.+.+.
T Consensus 52 GpVRgv~FH~~qplF--VSG---GDDykIkVWnYk~rrclftL~-GHlD------YVRt~~FHheyPWIlSASDDQTIrI 119 (1202)
T KOG0292|consen 52 GPVRGVDFHPTQPLF--VSG---GDDYKIKVWNYKTRRCLFTLL-GHLD------YVRTVFFHHEYPWILSASDDQTIRI 119 (1202)
T ss_pred CccceeeecCCCCeE--Eec---CCccEEEEEecccceehhhhc-cccc------eeEEeeccCCCceEEEccCCCeEEE
Confidence 448899999987654 443 344578888654444444432 2211 1267788888889999998888775
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCC----------------------
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI---------------------- 291 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~---------------------- 291 (826)
|.|. ..+.......|..|+--..|.|.=.-..+..-+..+.|||+.+=+.+...+.
T Consensus 120 WNwq--sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 120 WNWQ--SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred Eecc--CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 5544 3444444555555554333333211223344567899999865433332100
Q ss_pred ------CCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcce
Q 003363 292 ------PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV 365 (826)
Q Consensus 292 ------~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (826)
..+-++...+|.|.-.- ||..+ .+|.-.||+++-. ..=++.
T Consensus 198 VK~VLEGHDRGVNwaAfhpTlpl----iVSG~-------------DDRqVKlWrmnet----------------KaWEvD 244 (1202)
T KOG0292|consen 198 VKHVLEGHDRGVNWAAFHPTLPL----IVSGA-------------DDRQVKLWRMNET----------------KAWEVD 244 (1202)
T ss_pred eeeeecccccccceEEecCCcce----EEecC-------------CcceeeEEEeccc----------------cceeeh
Confidence 01123345566665554 44333 2344578888731 112344
Q ss_pred ecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 366 NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 366 ~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
....+...+.+..|.|.-..|+-.+.+ ..|.+||+....
T Consensus 245 tcrgH~nnVssvlfhp~q~lIlSnsED-----------ksirVwDm~kRt 283 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPHQDLILSNSED-----------KSIRVWDMTKRT 283 (1202)
T ss_pred hhhcccCCcceEEecCccceeEecCCC-----------ccEEEEeccccc
Confidence 556677788899999977766544443 357888876533
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.04 E-value=1.2 Score=45.24 Aligned_cols=173 Identities=12% Similarity=0.126 Sum_probs=94.1
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
+++.|+||.+.|+-+.+.+ ++|.-++.++.-++.+.
T Consensus 89 S~LTynp~~rtLFav~n~p-------------------------------------------~~iVElt~~GdlirtiP- 124 (316)
T COG3204 89 SSLTYNPDTRTLFAVTNKP-------------------------------------------AAIVELTKEGDLIRTIP- 124 (316)
T ss_pred cceeeCCCcceEEEecCCC-------------------------------------------ceEEEEecCCceEEEec-
Confidence 8999999999988775543 67777887666555552
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc------c
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP------V 364 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~------~ 364 (826)
..+-.....+.|.-+|+. +.+. + |..+||.+.++. ++.. .
T Consensus 125 L~g~~DpE~Ieyig~n~f-----vi~d-E-------------R~~~l~~~~vd~---------------~t~~~~~~~~~ 170 (316)
T COG3204 125 LTGFSDPETIEYIGGNQF-----VIVD-E-------------RDRALYLFTVDA---------------DTTVISAKVQK 170 (316)
T ss_pred ccccCChhHeEEecCCEE-----EEEe-h-------------hcceEEEEEEcC---------------CccEEeccceE
Confidence 222224456677777663 2222 1 333566555421 1111 1
Q ss_pred eecCC--C-CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC-CCcccceeeeeeeeeccCCCCCcc
Q 003363 365 VNLTE--S-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPG 440 (826)
Q Consensus 365 ~~Lt~--~-~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~g 440 (826)
..|-. . +......+|+|+.+.|.|...+.. ..||.++...... ...+...... ..
T Consensus 171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P---------~~I~~~~~~~~~l~~~~~~~~~~~------------~~ 229 (316)
T COG3204 171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP---------IGIFEVTQSPSSLSVHASLDPTAD------------RD 229 (316)
T ss_pred EeccccCCCCcCceeeecCCCCceEEEEEccCC---------cEEEEEecCCcccccccccCcccc------------cc
Confidence 12211 1 233567899999999998888753 4588876322111 1111111111 11
Q ss_pred cccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 441 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 441 ~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
++-..+..+.+.+....+++.+.. ...|..+|+.+.-+..+.
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~E--Sr~l~Evd~~G~~~~~ls 271 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDE--SRRLLEVDLSGEVIELLS 271 (316)
T ss_pred eEeeccccceecCCCCcEEEEecC--CceEEEEecCCCeeeeEE
Confidence 233345666776655556665543 335667787554344443
No 413
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=95.99 E-value=0.56 Score=46.92 Aligned_cols=147 Identities=15% Similarity=0.091 Sum_probs=86.0
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecC-C----
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT-E---- 369 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt-~---- 369 (826)
.+..+.|-|++++ |+.... .+|..++++ ++.+ ...|. .
T Consensus 125 ~i~cvew~Pns~k----lasm~d----------------n~i~l~~l~----------------ess~~vaev~ss~s~e 168 (370)
T KOG1007|consen 125 KINCVEWEPNSDK----LASMDD----------------NNIVLWSLD----------------ESSKIVAEVLSSESAE 168 (370)
T ss_pred ceeeEEEcCCCCe----eEEecc----------------CceEEEEcc----------------cCcchheeeccccccc
Confidence 4457899999999 887761 267777773 2222 11111 1
Q ss_pred CCccccCceecC--CCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCC
Q 003363 370 SISSAFFPRFSP--DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (826)
Q Consensus 370 ~~~~~~~p~~Sp--DG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 447 (826)
+....++-+||| ||.+++.++. ..|+.||+.|.....-.... +...+.
T Consensus 169 ~~~~ftsg~WspHHdgnqv~tt~d------------~tl~~~D~RT~~~~~sI~dA------------------Hgq~vr 218 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVATTSD------------STLQFWDLRTMKKNNSIEDA------------------HGQRVR 218 (370)
T ss_pred ccceecccccCCCCccceEEEeCC------------CcEEEEEccchhhhcchhhh------------------hcceee
Confidence 123457789998 8998876553 34889998875442111110 112344
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeC
Q 003363 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (826)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~ 508 (826)
.+.|.|+-+.++++...++..+||-....+--++.+.....-+....|.+..+.++...++
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC
Confidence 6778899888888877777777775443333344444333222233566666666665544
No 414
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.93 E-value=2.2 Score=43.14 Aligned_cols=164 Identities=11% Similarity=0.051 Sum_probs=81.6
Q ss_pred cccceeEEEEEEeecCCCC-ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCc
Q 003363 122 ANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTV 200 (826)
Q Consensus 122 ~~~~~~~l~~~~i~~~~~~-~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 200 (826)
+++-+..+..|.+...+.. .+-....+ +-+....||-||.+++...- + +..++|.+ ..++..++-.....+
T Consensus 45 A~SWD~tVR~wevq~~g~~~~ka~~~~~-----~PvL~v~WsddgskVf~g~~-D-k~~k~wDL-~S~Q~~~v~~Hd~pv 116 (347)
T KOG0647|consen 45 AGSWDGTVRIWEVQNSGQLVPKAQQSHD-----GPVLDVCWSDDGSKVFSGGC-D-KQAKLWDL-ASGQVSQVAAHDAPV 116 (347)
T ss_pred ecccCCceEEEEEecCCcccchhhhccC-----CCeEEEEEccCCceEEeecc-C-CceEEEEc-cCCCeeeeeecccce
Confidence 3445566777777654321 11111111 34889999999977754332 2 22223333 345666655443333
Q ss_pred cccccCCCcccceeecCCCC--eEEEEeecCCCCCCCccCCCCCCC--CCCccCCCCCCcceeecCCC--ccCCCccCce
Q 003363 201 HGSVYADGWFEGISWNSDET--LIAYVAEEPSPSKPTFSLGSTKGG--SSDKDCNSWKGQGDWEEDWG--ETYAGKRQPS 274 (826)
Q Consensus 201 ~g~v~~~~~~~~~~wSPDg~--~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~g--~~~~~~~~~~ 274 (826)
..+.|=+-.. -|+..+-+++.+ +|+....... ...++. .|.-|-- -..+.....+
T Consensus 117 ----------kt~~wv~~~~~~cl~TGSWDKTlK--fWD~R~~~pv~t~~LPeR-------vYa~Dv~~pm~vVata~r~ 177 (347)
T KOG0647|consen 117 ----------KTCHWVPGMNYQCLVTGSWDKTLK--FWDTRSSNPVATLQLPER-------VYAADVLYPMAVVATAERH 177 (347)
T ss_pred ----------eEEEEecCCCcceeEeccccccee--ecccCCCCeeeeeeccce-------eeehhccCceeEEEecCCc
Confidence 5666666554 556666665544 3331111100 001110 0111100 0112224578
Q ss_pred EEEEEccCCceE--eccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003363 275 LFVININSGEVQ--AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 275 l~v~d~~~g~~~--~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
|.+++++++..+ ++. .+-......++--+|.+. .+..+
T Consensus 178 i~vynL~n~~te~k~~~-SpLk~Q~R~va~f~d~~~----~alGs 217 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIE-SPLKWQTRCVACFQDKDG----FALGS 217 (347)
T ss_pred EEEEEcCCCcchhhhhc-CcccceeeEEEEEecCCc----eEeee
Confidence 899999766432 232 445567778888899887 65554
No 415
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.88 E-value=0.4 Score=57.08 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=39.3
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~ 230 (826)
+....+--|+..|.++...+ .++.++ .....+-+..+..++ ...+||||++.++++....+
T Consensus 71 i~s~~fl~d~~~i~v~~~~G----~iilvd~et~~~eivg~vd~GI----------~aaswS~Dee~l~liT~~~t 132 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALG----DIILVDPETLELEIVGNVDNGI----------SAASWSPDEELLALITGRQT 132 (1265)
T ss_pred eEEEEEecccceEEEEecCC----cEEEEcccccceeeeeeccCce----------EEEeecCCCcEEEEEeCCcE
Confidence 55666677777777765443 355554 233333344444455 79999999999999877553
No 416
>KOG4328 consensus WD40 protein [Function unknown]
Probab=95.88 E-value=0.17 Score=53.57 Aligned_cols=172 Identities=13% Similarity=0.081 Sum_probs=100.4
Q ss_pred CceEEEEEccCCc---eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 272 QPSLFVININSGE---VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 272 ~~~l~v~d~~~g~---~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
.++|-+||+.+.+ .....+++....++.+.|+|.... -++.+. .++.|...|+
T Consensus 209 ~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s----~i~ssS--------------yDGtiR~~D~------ 264 (498)
T KOG4328|consen 209 GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS----QIYSSS--------------YDGTIRLQDF------ 264 (498)
T ss_pred CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh----heeeec--------------cCceeeeeee------
Confidence 3678889985332 222224677778999999997776 445441 3347888888
Q ss_pred hhhhhhhcCCCCCCcceec-CC--CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceee
Q 003363 349 ASELELKESSSEDLPVVNL-TE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L-t~--~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 425 (826)
+++..+.+ +. ......+..|+.+...++|..+-+ .+.++|+.+++........
T Consensus 265 -----------~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-----------~f~~iD~R~~~s~~~~~~l-- 320 (498)
T KOG4328|consen 265 -----------EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-----------NFNVIDLRTDGSEYENLRL-- 320 (498)
T ss_pred -----------cchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-----------ceEEEEeecCCccchhhhh--
Confidence 44433322 22 333456677888888777776542 4667787776552100000
Q ss_pred eeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE-Ee--cCCCCCeeeEEEeecCCEE
Q 003363 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RI--TPAESNFSWSLLTLDGDNI 502 (826)
Q Consensus 426 ~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~-~l--t~~~~~~~~~~~s~dg~~l 502 (826)
+..-+..+.+.|--.+++.++..+....||-+.--.++.. -| ......+....|||+++.|
T Consensus 321 ----------------h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 321 ----------------HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred ----------------hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCce
Confidence 0112345566676667777777777777775532233332 12 2222356667899999986
Q ss_pred EEEEe
Q 003363 503 IAVSS 507 (826)
Q Consensus 503 ~~~~s 507 (826)
+..+.
T Consensus 385 ~TT~~ 389 (498)
T KOG4328|consen 385 LTTCQ 389 (498)
T ss_pred Eeecc
Confidence 65543
No 417
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=95.85 E-value=1.3 Score=44.50 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=65.1
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCc-ceeeeeeeeccCC-CceEEEEcccccch
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE-TRKLGIKYCYNRP-CALYAVRVSLYKSE 348 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~-~~~~g~~~~~~~~-~~l~~~d~~~~~~~ 348 (826)
+..++-+.|+++|...... ......+-.+.|||...+ +.+++.-+. -|.+.+. |- +-+..+|..
T Consensus 166 r~~~VrLCDi~SGs~sH~L-sGHr~~vlaV~Wsp~~e~----vLatgsaDg~irlWDiR----rasgcf~~lD~h----- 231 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTL-SGHRDGVLAVEWSPSSEW----VLATGSADGAIRLWDIR----RASGCFRVLDQH----- 231 (397)
T ss_pred CCCcEEEEeccCCcceeee-ccccCceEEEEeccCcee----EEEecCCCceEEEEEee----cccceeEEeecc-----
Confidence 4578999999999876551 223346778999999998 888763222 1112111 11 112233321
Q ss_pred hhhhhhhcCCCCCCcc---eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 349 ASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~---~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
++... +.-+.+.+.+...+|+.||.+++....+ .++.+|+...|..
T Consensus 232 -----------n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd-----------~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 232 -----------NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD-----------DRIRVWNMESGRN 280 (397)
T ss_pred -----------cCccCccccccccccceeeeeeecccchhhhhccCc-----------cceEEeecccCcc
Confidence 11111 1123456668889999999998755543 4577777766654
No 418
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=95.78 E-value=0.083 Score=58.46 Aligned_cols=132 Identities=19% Similarity=0.264 Sum_probs=76.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHH---------------------HHHHHHCCcEEEEECCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS---------------------LAFLSSVGYSLLIVNYR 630 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~---------------------~~~la~~G~~Vl~~d~r 630 (826)
.+..+..|++...+ .....|+|+++-|||+.......... ...+. +-..++-+|.+
T Consensus 48 ~~~~lfy~f~es~~--~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~-~~anllfiDqP 124 (433)
T PLN03016 48 ENVQFFYYFIKSEN--NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWT-KMANIIFLDQP 124 (433)
T ss_pred CCeEEEEEEEecCC--CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchh-hcCcEEEecCC
Confidence 34568888887553 45678999999999986431100000 00111 12578888866
Q ss_pred CCCCCchhhhhcCCCCCCc-chHHHHHHHHHHHH-HcCCCCCCcEEEEEecchHHHHHHHHHh----C------CCceeE
Q 003363 631 GSLGFGEEALQSLPGKVGS-QDVNDVLTAIDHVI-DMGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVA 698 (826)
Q Consensus 631 G~~g~G~~~~~~~~~~~~~-~~~~D~~~~i~~l~-~~~~~d~~rv~l~G~S~GG~~a~~~a~~----~------p~~~~a 698 (826)
-..||...... ...... ..++|+..+++... +.+..-..++.|+|.|+||..+-.+|.. . +-.+++
T Consensus 125 vGtGfSy~~~~--~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkG 202 (433)
T PLN03016 125 VGSGFSYSKTP--IDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQG 202 (433)
T ss_pred CCCCccCCCCC--CCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCccccee
Confidence 54555432111 111111 12356666555443 3444456789999999999876665542 1 125789
Q ss_pred EEecCCccch
Q 003363 699 AAARNPLCNL 708 (826)
Q Consensus 699 ~v~~~p~~~~ 708 (826)
+++.+|+.+.
T Consensus 203 i~iGNg~t~~ 212 (433)
T PLN03016 203 YMLGNPVTYM 212 (433)
T ss_pred eEecCCCcCc
Confidence 9999997654
No 419
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=95.76 E-value=0.26 Score=50.54 Aligned_cols=224 Identities=10% Similarity=0.123 Sum_probs=138.1
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEec-
Q 003363 120 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHV- 196 (826)
Q Consensus 120 ~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~- 196 (826)
+..++.+..+-++++.++. ..+|..+ ....+..+++|+---+|....+++ .+..|+ ..+..+..+.
T Consensus 166 f~tgs~DrtikIwDlatg~---LkltltG---hi~~vr~vavS~rHpYlFs~gedk-----~VKCwDLe~nkvIR~YhGH 234 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLATGQ---LKLTLTG---HIETVRGVAVSKRHPYLFSAGEDK-----QVKCWDLEYNKVIRHYHGH 234 (460)
T ss_pred EEecCCCceeEEEEcccCe---EEEeecc---hhheeeeeeecccCceEEEecCCC-----eeEEEechhhhhHHHhccc
Confidence 3445566777787774432 2333332 124588899998888886554433 455663 2222222211
Q ss_pred CCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEE
Q 003363 197 PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLF 276 (826)
Q Consensus 197 ~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~ 276 (826)
-.++ .++...|--..|+..+.+.+.+ .|+...+........+..-+.++.+.+--+..+++..+..|.
T Consensus 235 lS~V----------~~L~lhPTldvl~t~grDst~R--vWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 235 LSGV----------YCLDLHPTLDVLVTGGRDSTIR--VWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred ccee----------EEEeccccceeEEecCCcceEE--EeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 1122 6788888888887777666544 444444444444555655566666666556777788889999
Q ss_pred EEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhh
Q 003363 277 VININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 355 (826)
Q Consensus 277 v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 355 (826)
+||+..|+.. .+ +.....+...+..|+-.. ++..+ ..+|-.++++
T Consensus 303 lWDl~agkt~~tl--t~hkksvral~lhP~e~~----fASas----------------~dnik~w~~p------------ 348 (460)
T KOG0285|consen 303 LWDLRAGKTMITL--THHKKSVRALCLHPKENL----FASAS----------------PDNIKQWKLP------------ 348 (460)
T ss_pred EeeeccCceeEee--ecccceeeEEecCCchhh----hhccC----------------CccceeccCC------------
Confidence 9999877644 44 566667888889997665 33222 1257777774
Q ss_pred cCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 356 ESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 356 ~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
.+.-...|..+...+.......||-.+ ... ....|+.|||.++-.
T Consensus 349 ----~g~f~~nlsgh~~iintl~~nsD~v~~--~G~----------dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 349 ----EGEFLQNLSGHNAIINTLSVNSDGVLV--SGG----------DNGSIMFWDWKSGHN 393 (460)
T ss_pred ----ccchhhccccccceeeeeeeccCceEE--EcC----------CceEEEEEecCcCcc
Confidence 444566677777667777777787432 222 235799999998755
No 420
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.76 E-value=0.12 Score=56.99 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=39.1
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeec
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~ 228 (826)
.+...+|-|||.+|+....+. ++..+ .+|..-+.. .+..+-| ..++||.||++.|..+.+
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-----lliyD~ndG~llqtL---KgHKDtV------ycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-----LLVYDTSDGTLLQPL---KGHKDTV------YCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred chheeEECCCCceEEEecCCE-----EEEEeCCCccccccc---ccccceE------EEEEEccCCceeccCCCc
Confidence 477889999999998875543 55555 333332222 2333333 799999999998875443
No 421
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.72 E-value=0.042 Score=55.75 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=63.9
Q ss_pred cEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHH-HHHHHcCCCCCC
Q 003363 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANPS 671 (826)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~~ 671 (826)
|.++++|++.+. ...|.....+|... ..|+.++.+|.+... .....++|..+.. +.+.+. -...
T Consensus 1 ~pLF~fhp~~G~--~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~----------~~~~~l~~~a~~yv~~Ir~~--QP~G 65 (257)
T COG3319 1 PPLFCFHPAGGS--VLAYAPLAAALGPL-LPVYGLQAPGYGAGE----------QPFASLDDMAAAYVAAIRRV--QPEG 65 (257)
T ss_pred CCEEEEcCCCCc--HHHHHHHHHHhccC-ceeeccccCcccccc----------cccCCHHHHHHHHHHHHHHh--CCCC
Confidence 568899996554 44666677777666 889999999843211 1122355544433 333332 1245
Q ss_pred cEEEEEecchHHHHHHHHHhC---CCceeEEEecCCccc
Q 003363 672 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCN 707 (826)
Q Consensus 672 rv~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~~ 707 (826)
++.|.|||+||.++..+|.+. .+.+..++++.++..
T Consensus 66 Py~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 899999999999999888753 335666666665544
No 422
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.71 E-value=2.7 Score=42.46 Aligned_cols=182 Identities=19% Similarity=0.150 Sum_probs=90.3
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
...|+.+|..+|++..-...+...... + ..++.. |++.. ....|+.+|+
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~~~~~~~~-~--~~~~~~----v~v~~---------------~~~~l~~~d~--------- 93 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDLPGPISGA-P--VVDGGR----VYVGT---------------SDGSLYALDA--------- 93 (238)
T ss_dssp TSEEEEEETTTSEEEEEEECSSCGGSG-E--EEETTE----EEEEE---------------TTSEEEEEET---------
T ss_pred CCEEEEEECCCCCEEEEeeccccccce-e--eecccc----ccccc---------------ceeeeEeccc---------
Confidence 378999999999876542122222211 2 344554 65554 1227999997
Q ss_pred hhhhcCCCCCCcceec-CCC----CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcc--ccee
Q 003363 352 LELKESSSEDLPVVNL-TES----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL--EKIV 424 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~L-t~~----~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~--~~~~ 424 (826)
.+|+...- ... ......+....+|+.+++.... ..|+.+|+.+|...-.. ....
T Consensus 94 --------~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 94 --------KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-----------GKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp --------TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-----------SEEEEEETTTTEEEEEEESSTT-
T ss_pred --------CCcceeeeeccccccccccccccCceEecCEEEEEecc-----------CcEEEEecCCCcEEEEeecCCCC
Confidence 56654322 111 1122334444457777665542 46899998887652100 0000
Q ss_pred eeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEE
Q 003363 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIA 504 (826)
Q Consensus 425 ~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~ 504 (826)
...++. . .......+.+ .++ .+++... .+. ++.+|+.+|+..- ...... .......+++.+++
T Consensus 155 ~~~~~~------~----~~~~~~~~~~-~~~-~v~~~~~-~g~--~~~~d~~tg~~~w-~~~~~~-~~~~~~~~~~~l~~ 217 (238)
T PF13360_consen 155 GSSPIS------S----FSDINGSPVI-SDG-RVYVSSG-DGR--VVAVDLATGEKLW-SKPISG-IYSLPSVDGGTLYV 217 (238)
T ss_dssp SS--EE------E----ETTEEEEEEC-CTT-EEEEECC-TSS--EEEEETTTTEEEE-EECSS--ECECEECCCTEEEE
T ss_pred CCccee------e----ecccccceEE-ECC-EEEEEcC-CCe--EEEEECCCCCEEE-EecCCC-ccCCceeeCCEEEE
Confidence 000000 0 0000012222 245 5655432 332 6777999998553 322221 22235667777776
Q ss_pred EEeCCCCCCeEEEEeecccC
Q 003363 505 VSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 505 ~~s~~~~p~~l~~~~~~~~~ 524 (826)
.. . -..++.+|+.+++
T Consensus 218 ~~-~---~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 218 TS-S---DGRLYALDLKTGK 233 (238)
T ss_dssp EE-T---TTEEEEEETTTTE
T ss_pred Ee-C---CCEEEEEECCCCC
Confidence 66 3 2568888877653
No 423
>PLN02209 serine carboxypeptidase
Probab=95.66 E-value=0.11 Score=57.57 Aligned_cols=133 Identities=19% Similarity=0.249 Sum_probs=77.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-------H--------------HHHHHHCCcEEEEECCC
Q 003363 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-------S--------------LAFLSSVGYSLLIVNYR 630 (826)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-------~--------------~~~la~~G~~Vl~~d~r 630 (826)
.+..+..|++.... .....|+|+++-|||+......... . ...+. +-..++-+|.+
T Consensus 50 ~~~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~-~~anllfiDqP 126 (437)
T PLN02209 50 ENVQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWT-KTANIIFLDQP 126 (437)
T ss_pred CCeEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchh-hcCcEEEecCC
Confidence 35567777776553 4456899999999998753211000 0 00111 12467888866
Q ss_pred CCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHH-cCCCCCCcEEEEEecchHHHHHHHHHh----C------CCceeEE
Q 003363 631 GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAA 699 (826)
Q Consensus 631 G~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~a~~----~------p~~~~a~ 699 (826)
-..||......... ..-..+++|+..+++...+ .+.....++.|+|.|+||..+-.++.. . +-.++++
T Consensus 127 vGtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi 205 (437)
T PLN02209 127 VGSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGY 205 (437)
T ss_pred CCCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeE
Confidence 55555432111110 1111235666666654444 344555689999999999876655532 1 1247899
Q ss_pred EecCCccch
Q 003363 700 AARNPLCNL 708 (826)
Q Consensus 700 v~~~p~~~~ 708 (826)
++.+|+++.
T Consensus 206 ~igng~td~ 214 (437)
T PLN02209 206 VLGNPITHI 214 (437)
T ss_pred EecCcccCh
Confidence 999998764
No 424
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.64 E-value=0.51 Score=51.32 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=78.5
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcE-EEEECCCCCCCCchhhhhcCCCCCCc
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS-LLIVNYRGSLGFGEEALQSLPGKVGS 649 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~-Vl~~d~rG~~g~G~~~~~~~~~~~~~ 649 (826)
..+.++- +++.| ++-+.|+.|+.-|.-.. .+|.. .-.+...|.- .+.-|.|-.+| +| -.|.
T Consensus 273 ~~reEi~-yYFnP----GD~KPPL~VYFSGyR~a---EGFEg-y~MMk~Lg~PfLL~~DpRleGG---aF------YlGs 334 (511)
T TIGR03712 273 SKRQEFI-YYFNP----GDFKPPLNVYFSGYRPA---EGFEG-YFMMKRLGAPFLLIGDPRLEGG---AF------YLGS 334 (511)
T ss_pred CCCCeeE-EecCC----cCCCCCeEEeeccCccc---Ccchh-HHHHHhcCCCeEEeeccccccc---ee------eeCc
Confidence 3345553 34445 45677999999884322 23321 1233455654 45668887443 32 1222
Q ss_pred chH-HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEecCCccchhhhccC
Q 003363 650 QDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (826)
Q Consensus 650 ~~~-~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~ 714 (826)
.+. +.+...|+..++.-..+.+.+.|.|-|||.+-|+.++++. ...|+|+.-|++++-.+...
T Consensus 335 ~eyE~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~NLGtiA~n 398 (511)
T TIGR03712 335 DEYEQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVNLGTIASR 398 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccchhhhhcc
Confidence 223 2355666655555457889999999999999999998864 35788999999988666543
No 425
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.61 E-value=1 Score=49.30 Aligned_cols=113 Identities=10% Similarity=-0.031 Sum_probs=63.6
Q ss_pred CccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCc--
Q 003363 295 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-- 372 (826)
Q Consensus 295 ~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~-- 372 (826)
..+..+.|+-||-. ++... ..+.+|++|+ .+.++-.+-.+.+
T Consensus 229 ~svTal~F~d~gL~----~aVGt---------------s~G~v~iyDL-----------------Ra~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 229 PSVTALKFRDDGLH----VAVGT---------------STGSVLIYDL-----------------RASKPLLVKDHGYEL 272 (703)
T ss_pred CcceEEEecCCcee----EEeec---------------cCCcEEEEEc-----------------ccCCceeecccCCcc
Confidence 35778899999877 76654 4458999998 4444444443322
Q ss_pred cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccc
Q 003363 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (826)
Q Consensus 373 ~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (826)
.+....|-+.++.=..++.+. .-|.+||-.+|....... +...+..+|+-
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk----------~~~kiWd~~~Gk~~asiE--------------------pt~~lND~C~~ 322 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDK----------RILKIWDECTGKPMASIE--------------------PTSDLNDFCFV 322 (703)
T ss_pred ceeeecccccCCCceEEecch----------HHhhhcccccCCceeecc--------------------ccCCcCceeee
Confidence 244455544322222233332 235667766665421110 11235577888
Q ss_pred cCCCEEEEEEEeCCeEEEEEEE
Q 003363 453 SDGCTMLLSSIWGSSQVIISVN 474 (826)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~vd 474 (826)
|++- ++|.+...+....|.+.
T Consensus 323 p~sG-m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 323 PGSG-MFFTANESSKMHTYYIP 343 (703)
T ss_pred cCCc-eEEEecCCCcceeEEcc
Confidence 8876 66776666666666654
No 426
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.59 E-value=0.74 Score=51.11 Aligned_cols=47 Identities=17% Similarity=0.376 Sum_probs=27.0
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET 220 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~ 220 (826)
....+++|+|+.++...+++ |.+......+.... ..+ ..+.|+++++
T Consensus 35 p~~ls~npngr~v~V~g~ge------Y~iyt~~~~r~k~~-G~g-----------~~~vw~~~n~ 81 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDGE------YEIYTALAWRNKAF-GSG-----------LSFVWSSRNR 81 (443)
T ss_dssp -SEEEE-TTSSEEEEEETTE------EEEEETTTTEEEEE-EE------------SEEEE-TSSE
T ss_pred CeeEEECCCCCEEEEEcCCE------EEEEEccCCccccc-Cce-----------eEEEEecCcc
Confidence 56789999999999865543 66664322222222 122 4788999776
No 427
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=95.57 E-value=0.12 Score=56.76 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=80.3
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchHHHHH---------HH------HCCcEEEEECCCCCCCC
Q 003363 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAF---------LS------SVGYSLLIVNYRGSLGF 635 (826)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~---------la------~~G~~Vl~~d~rG~~g~ 635 (826)
..+..+..|++.... .....|+||++-|||+.+...+.....-- |. .+-..++-+|-+-..||
T Consensus 54 ~~~~~LFYwf~eS~~--~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~PvGvGF 131 (454)
T KOG1282|consen 54 SEGRQLFYWFFESEN--NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQPVGVGF 131 (454)
T ss_pred CCCceEEEEEEEccC--CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEecCCcCCc
Confidence 356789989887652 45668999999999987533221110000 00 01135667776644445
Q ss_pred chhhhhcCCCCCCc-chHHHHHHH-HHHHHHcCCCCCCcEEEEEecchHHHHHHHHH----hC-----C-CceeEEEecC
Q 003363 636 GEEALQSLPGKVGS-QDVNDVLTA-IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG----QA-----P-DKFVAAAARN 703 (826)
Q Consensus 636 G~~~~~~~~~~~~~-~~~~D~~~~-i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~----~~-----p-~~~~a~v~~~ 703 (826)
.-+-...... .++ ...+|...+ .+|+.+.+..-.+.+.|.|.|++|..+-.+|. .. | --+++.++.+
T Consensus 132 SYs~~~~~~~-~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGN 210 (454)
T KOG1282|consen 132 SYSNTSSDYK-TGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGN 210 (454)
T ss_pred cccCCCCcCc-CCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecC
Confidence 3322111111 121 235665554 45777667677788999999999976655543 21 1 2589999999
Q ss_pred Cccch
Q 003363 704 PLCNL 708 (826)
Q Consensus 704 p~~~~ 708 (826)
|+.+.
T Consensus 211 g~td~ 215 (454)
T KOG1282|consen 211 GLTDP 215 (454)
T ss_pred cccCc
Confidence 98764
No 428
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=95.57 E-value=0.043 Score=58.83 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=66.2
Q ss_pred EEEEEcCCCCCCCCccchHHHHHHHHCCcE---EEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 003363 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (826)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~---Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (826)
.++++||.... ...+......++..|+. +..+++.+.... .......+.+.+-++.+.... ..
T Consensus 61 pivlVhG~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~ql~~~V~~~l~~~--ga 126 (336)
T COG1075 61 PIVLVHGLGGG--YGNFLPLDYRLAILGWLTNGVYAFELSGGDGT----------YSLAVRGEQLFAYVDEVLAKT--GA 126 (336)
T ss_pred eEEEEccCcCC--cchhhhhhhhhcchHHHhcccccccccccCCC----------ccccccHHHHHHHHHHHHhhc--CC
Confidence 58889996332 34555555567777777 777777753111 111122455556566555542 34
Q ss_pred CcEEEEEecchHHHHHHHHHhCC--CceeEEEecCCcc
Q 003363 671 SKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLC 706 (826)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~a~~~p--~~~~a~v~~~p~~ 706 (826)
.+|.++|||+||..+.+++...+ .+++.++..++.-
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~ 164 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPH 164 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccCC
Confidence 78999999999999999988887 7888888777643
No 429
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=95.56 E-value=0.36 Score=50.02 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=75.6
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEe-cc
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VK 289 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-l~ 289 (826)
.++.|||.++.+++.+.- ...|.+||+..+.-+. +.
T Consensus 261 EDLqWSptE~~vfaScS~-------------------------------------------DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSC-------------------------------------------DGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred hhhccCCccCceEEeeec-------------------------------------------CceEEEEEecCCCccceeE
Confidence 899999999988887543 3678899988773221 11
Q ss_pred CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC-cceecC
Q 003363 290 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLT 368 (826)
Q Consensus 290 ~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt 368 (826)
-......+.-++|+-+-.. |++.+ .+..+-++|+.. ...+ .+....
T Consensus 298 ~kAh~sDVNVISWnr~~~l----LasG~---------------DdGt~~iwDLR~--------------~~~~~pVA~fk 344 (440)
T KOG0302|consen 298 TKAHNSDVNVISWNRREPL----LASGG---------------DDGTLSIWDLRQ--------------FKSGQPVATFK 344 (440)
T ss_pred eeccCCceeeEEccCCcce----eeecC---------------CCceEEEEEhhh--------------ccCCCcceeEE
Confidence 0223335666789887776 77665 223677777731 1223 334555
Q ss_pred CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 369 ~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
.+...+.+..|+|....++-.+..+ ++|.+||+..
T Consensus 345 ~Hk~pItsieW~p~e~s~iaasg~D----------~QitiWDlsv 379 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHEDSVIAASGED----------NQITIWDLSV 379 (440)
T ss_pred eccCCeeEEEeccccCceEEeccCC----------CcEEEEEeec
Confidence 6777899999999776665555433 5677787754
No 430
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=95.55 E-value=0.035 Score=60.37 Aligned_cols=91 Identities=22% Similarity=0.266 Sum_probs=65.2
Q ss_pred CCCCcEEEEEcCCCCCCCCc-cchHHH-HHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcC
Q 003363 589 CSCDPLIVVLHGGPHSVSLS-SYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 666 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~-~~~~~~-~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 666 (826)
....-+|+.+|||++..... .-..+. ++..+.|.-|+.+||...++ ...+...+++.-|.-|++++.
T Consensus 393 p~S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPE-----------aPFPRaleEv~fAYcW~inn~ 461 (880)
T KOG4388|consen 393 PRSRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPE-----------APFPRALEEVFFAYCWAINNC 461 (880)
T ss_pred CCCceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCC-----------CCCCcHHHHHHHHHHHHhcCH
Confidence 34556899999988754322 222233 34457799999999987543 344556899999999999863
Q ss_pred C---CCCCcEEEEEecchHHHHHHHHH
Q 003363 667 L---ANPSKVTVVGGSHGGFLTTHLIG 690 (826)
Q Consensus 667 ~---~d~~rv~l~G~S~GG~~a~~~a~ 690 (826)
. .-.+||++.|.|.||.+.+-++.
T Consensus 462 allG~TgEriv~aGDSAGgNL~~~VaL 488 (880)
T KOG4388|consen 462 ALLGSTGERIVLAGDSAGGNLCFTVAL 488 (880)
T ss_pred HHhCcccceEEEeccCCCcceeehhHH
Confidence 2 34689999999999998765554
No 431
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=2.3 Score=43.17 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=42.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEE
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIA 223 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia 223 (826)
..++...|+||-+.|..+-+ ...++.++...|+..+.+.+.. .++. +++.|.-+|+.++
T Consensus 86 ~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g-~~Dp-------E~Ieyig~n~fvi 144 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTG-FSDP-------ETIEYIGGNQFVI 144 (316)
T ss_pred ccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccc-cCCh-------hHeEEecCCEEEE
Confidence 45899999999999976644 4567889998888888877653 2211 5778887776443
No 432
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.48 E-value=3.4 Score=42.04 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=64.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCC
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~ 233 (826)
.+++...|||.+..|+..+= ++.-.+|.+... ..+..+...... ....|.++. .+++..
T Consensus 14 d~IS~v~f~~~~~~LLvssW--DgslrlYdv~~~-~l~~~~~~~~pl----------L~c~F~d~~-~~~~G~------- 72 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSW--DGSLRLYDVPAN-SLKLKFKHGAPL----------LDCAFADES-TIVTGG------- 72 (323)
T ss_pred hceeeEEEcCcCCcEEEEec--cCcEEEEeccch-hhhhheecCCce----------eeeeccCCc-eEEEec-------
Confidence 46899999999999987662 344444444422 233333222222 566676643 455432
Q ss_pred CCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003363 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (826)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (826)
-+..|.++|+.+++...+ -.+...+..+..++-... +
T Consensus 73 -------------------------------------~dg~vr~~Dln~~~~~~i--gth~~~i~ci~~~~~~~~----v 109 (323)
T KOG1036|consen 73 -------------------------------------LDGQVRRYDLNTGNEDQI--GTHDEGIRCIEYSYEVGC----V 109 (323)
T ss_pred -------------------------------------cCceEEEEEecCCcceee--ccCCCceEEEEeeccCCe----E
Confidence 346788999999988887 455556667777775555 7
Q ss_pred EEEeecCc
Q 003363 314 VFVGWSSE 321 (826)
Q Consensus 314 vf~~~~~~ 321 (826)
+-.+|+..
T Consensus 110 IsgsWD~~ 117 (323)
T KOG1036|consen 110 ISGSWDKT 117 (323)
T ss_pred EEcccCcc
Confidence 77777654
No 433
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=95.44 E-value=0.12 Score=57.62 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=33.8
Q ss_pred cCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCc
Q 003363 271 RQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (826)
Q Consensus 271 ~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~ 321 (826)
..+.+.||+++.-. +..+ ......+..++|||.+++ |+.++...+
T Consensus 100 ~~pa~kVw~la~h~vVAEf--vdHKY~vtcvaFsp~~ky----vvSVGsQHD 145 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVAEF--VDHKYNVTCVAFSPGNKY----VVSVGSQHD 145 (1080)
T ss_pred CCccceeeeeccccchhhh--hhccccceeeeecCCCcE----EEeeccccc
Confidence 35788999998644 3344 566678899999999999 998885444
No 434
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.068 Score=60.62 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHcC----CCC---CCcEEEEEecchHHHHHHHHHhCCCcee
Q 003363 651 DVNDVLTAIDHVIDMG----LAN---PSKVTVVGGSHGGFLTTHLIGQAPDKFV 697 (826)
Q Consensus 651 ~~~D~~~~i~~l~~~~----~~d---~~rv~l~G~S~GG~~a~~~a~~~p~~~~ 697 (826)
..+-+.+||+++.+.. ..+ |..|.|+||||||.+|..++.. |...+
T Consensus 155 QtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl-kn~~~ 207 (973)
T KOG3724|consen 155 QTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL-KNEVQ 207 (973)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh-hhhcc
Confidence 3555677777777642 223 6679999999999998877663 44333
No 435
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.10 E-value=0.076 Score=59.24 Aligned_cols=179 Identities=13% Similarity=0.085 Sum_probs=99.8
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC
Q 003363 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS 188 (826)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~ 188 (826)
+.|.|...+.-++++.....|.+|++. .....+.|+..- .....+.|+|-|.+.|--+.. .=+.+|+..
T Consensus 74 eSl~f~~~E~LlaagsasgtiK~wDle-eAk~vrtLtgh~-----~~~~sv~f~P~~~~~a~gStd-----td~~iwD~R 142 (825)
T KOG0267|consen 74 ESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVRTLTGHL-----LNITSVDFHPYGEFFASGSTD-----TDLKIWDIR 142 (825)
T ss_pred eeeecCcchhhhcccccCCceeeeehh-hhhhhhhhhccc-----cCcceeeeccceEEecccccc-----ccceehhhh
Confidence 345566667777788888889999985 333445555443 345667799999988543322 235666432
Q ss_pred ceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCC
Q 003363 189 QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYA 268 (826)
Q Consensus 189 ~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~ 268 (826)
...-.... .+..+.+ ..++|+|||++++-..++...+ .|+...++..+.++.+..-....++.+.---+..
T Consensus 143 k~Gc~~~~-~s~~~vv------~~l~lsP~Gr~v~~g~ed~tvk--i~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~ 213 (825)
T KOG0267|consen 143 KKGCSHTY-KSHTRVV------DVLRLSPDGRWVASGGEDNTVK--IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP 213 (825)
T ss_pred ccCceeee-cCCccee------EEEeecCCCceeeccCCcceee--eecccccccccccccccccccccccCchhhhhcc
Confidence 11111111 1121222 6789999999999887755443 4443333333333333222222223332111223
Q ss_pred CccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003363 269 GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 269 ~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
+..+..+-+||+++=++..- +-+....+....|.|||+.
T Consensus 214 Gs~d~tv~f~dletfe~I~s-~~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 214 GSSDRTVRFWDLETFEVISS-GKPETDGVRSLAFNPDGKI 252 (825)
T ss_pred CCCCceeeeeccceeEEeec-cCCccCCceeeeecCCcee
Confidence 44567788899876544322 1233456778899999994
No 436
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=94.98 E-value=0.045 Score=54.73 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=18.1
Q ss_pred CCcEEEEEecchHHHHHHHHH
Q 003363 670 PSKVTVVGGSHGGFLTTHLIG 690 (826)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~a~ 690 (826)
..+|.++|||+||.++-.++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 358999999999999987765
No 437
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=94.94 E-value=4.4 Score=44.06 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=74.6
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..+.+|++.+++..... ......+..+.|+|+++. ++.... ....|..+|.
T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~----~~~~~~--------------~d~~i~~wd~---------- 228 (466)
T COG2319 178 GTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGL----LIASGS--------------SDGTIRLWDL---------- 228 (466)
T ss_pred CceEEEEcCCCceEEee-ccCCCceEEEEEcCCcce----EEEEec--------------CCCcEEEEEC----------
Confidence 56888888765544431 223456778899999984 444421 1123444465
Q ss_pred hhhcCCCCCCccee--cCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeee
Q 003363 353 ELKESSSEDLPVVN--LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (826)
Q Consensus 353 ~~~~~~~~~~~~~~--Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 430 (826)
..+.... +..+.... ...|+|++..++..+. ...+.+++....... +...
T Consensus 229 -------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------d~~~~~~~~~~~~~~--------~~~~- 280 (466)
T COG2319 229 -------STGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS-----------DGTIRLWDLRSSSSL--------LRTL- 280 (466)
T ss_pred -------CCCcEEeeecCCCCcce-eEeECCCCCEEEEecC-----------CCcEEEeeecCCCcE--------EEEE-
Confidence 3233322 33333332 2389999966652222 245777776654430 0000
Q ss_pred eccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
... ...+....|.|++..++. ...++...+| |..++......
T Consensus 281 -~~~--------~~~v~~~~~~~~~~~~~~-~~~d~~~~~~--~~~~~~~~~~~ 322 (466)
T COG2319 281 -SGH--------SSSVLSVAFSPDGKLLAS-GSSDGTVRLW--DLETGKLLSSL 322 (466)
T ss_pred -ecC--------CccEEEEEECCCCCEEEE-eeCCCcEEEE--EcCCCceEEEe
Confidence 000 112334578888876666 4444444555 77666544443
No 438
>PRK13614 lipoprotein LpqB; Provisional
Probab=94.89 E-value=2.6 Score=48.21 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=52.2
Q ss_pred cccCceecCCCCEEEEEeccCCCCCCCCcccceEEE--EeCCCCCC-CCcccceeeeeeeeeccCCCCCcccccCCCCCC
Q 003363 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR--IDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (826)
Q Consensus 373 ~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~--~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 449 (826)
.+...+.|+||.+++.+...+ +..+|++ +--..++. +.++.. ..+. .......+
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~~--------g~~~V~va~V~R~~~G~P~~L~~~----~~~~-----------~~~~~~sl 491 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQN--------GKSRVQVAGIVRNEDGTPRELTAP----ITLA-----------ADSDADTG 491 (573)
T ss_pred eeEEEEECCCccEEEEEEEeC--------CccEEEEEEEEeCCCCCeEEccCc----eecc-----------cCCCccee
Confidence 378899999999999998654 2334555 32222222 333211 1110 01134578
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 450 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
.|..|+..++.+....++...+.+.+..|..+.+.
T Consensus 492 ~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~l~ 526 (573)
T PRK13614 492 AWVGDSTVVVTKASATSNVVPELLSVDAGQPQQLA 526 (573)
T ss_pred EEcCCCEEEEEeccCCCcceEEEEEeCCCCcccCC
Confidence 89988875555444456667788888666655444
No 439
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=94.89 E-value=0.042 Score=54.86 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCC----CceeEEEecCC
Q 003363 656 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARNP 704 (826)
Q Consensus 656 ~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~p 704 (826)
..|++++.+...-.+++|.+.|||.||.+|..+++..+ +++..+....+
T Consensus 69 ~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 44555554431112346999999999999999988743 46666665544
No 440
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=94.80 E-value=0.89 Score=46.27 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=44.1
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCC---cceec
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNL 367 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~L 367 (826)
...+..+..+.|+|.+.+ |+-.+- +|+ -|++..+ .++ ..-.|
T Consensus 52 s~Hd~~vtgvdWap~snr----Ivtcs~-------------drn--ayVw~~~----------------~~~~WkptlvL 96 (361)
T KOG1523|consen 52 SEHDKIVTGVDWAPKSNR----IVTCSH-------------DRN--AYVWTQP----------------SGGTWKPTLVL 96 (361)
T ss_pred hhhCcceeEEeecCCCCc----eeEccC-------------CCC--ccccccC----------------CCCeeccceeE
Confidence 344557778999999998 988762 232 3333331 222 22344
Q ss_pred CCCCccccCceecCCCCEEEEEecc
Q 003363 368 TESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 368 t~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
-..++.+....|||.++++|..+..
T Consensus 97 lRiNrAAt~V~WsP~enkFAVgSga 121 (361)
T KOG1523|consen 97 LRINRAATCVKWSPKENKFAVGSGA 121 (361)
T ss_pred EEeccceeeEeecCcCceEEeccCc
Confidence 4557788999999999999876643
No 441
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.76 E-value=3.6 Score=43.82 Aligned_cols=145 Identities=12% Similarity=0.093 Sum_probs=83.7
Q ss_pred cCceEEEEEccCCceEeccCCC-CCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 271 RQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~-~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
....+.+||+++|++... +. ..-.+..+.|.|..-. +...+. ....+.+.|....
T Consensus 264 aD~TV~lWD~~~g~p~~s--~~~~~k~Vq~l~wh~~~p~----~LLsGs--------------~D~~V~l~D~R~~---- 319 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSS--ITHHGKKVQTLEWHPYEPS----VLLSGS--------------YDGTVALKDCRDP---- 319 (463)
T ss_pred CCceEEEEEcCCCCccee--hhhcCCceeEEEecCCCce----EEEecc--------------ccceEEeeeccCc----
Confidence 457899999999999887 44 3446788999998776 555551 2235556665210
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeee
Q 003363 350 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (826)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 429 (826)
...+..-+. .+.+....|.|-....+|.+.++ ..|+-+|....+.- +
T Consensus 320 ---------~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tdd----------G~v~~~D~R~~~~~-----------v 366 (463)
T KOG0270|consen 320 ---------SNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDD----------GTVYYFDIRNPGKP-----------V 366 (463)
T ss_pred ---------cccCceEEe---ccceEEEEecCCCceeEEEecCC----------ceEEeeecCCCCCc-----------e
Confidence 012222222 23455667777766666666554 45888887654321 1
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~ 479 (826)
|... .+...+..++.++.-..++.+........||.++....+
T Consensus 367 wt~~-------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 367 WTLK-------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred eEEE-------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 1100 022244455555555556666555566677877765543
No 442
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.41 E-value=2 Score=47.28 Aligned_cols=100 Identities=20% Similarity=0.204 Sum_probs=63.6
Q ss_pred CccCceEEEEEccCCceEeccCCCC-CCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccc
Q 003363 269 GKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 269 ~~~~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (826)
+.....++++++.+|+++.-..+.. ...+....|+.+-.. |+.++ .++.+..++.
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c----iyS~~---------------ad~~v~~~~~----- 131 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC----IYSVG---------------ADLKVVYILE----- 131 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCc----eEecC---------------CceeEEEEec-----
Confidence 3356789999999998875421122 235556677776665 55444 3335666665
Q ss_pred hhhhhhhhcCCCCCCcceecCC-CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 348 EASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
..+...+... ......+...||||+.|+..+ .+|.++|..+++..
T Consensus 132 ------------~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-------------~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 132 ------------KEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-------------RQIKVLDIETKEVV 177 (541)
T ss_pred ------------ccceeeeeeccCCCccceEEEcCCCCEEEecc-------------ceEEEEEccCceEE
Confidence 4444444433 234567889999999887444 45899998886653
No 443
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.41 E-value=3.5 Score=45.65 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=59.2
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
...+++.++.-...+.-. ......+..+.|.|.--+ ++..+ . ..+.++|+.
T Consensus 545 ~~~VliHQLSK~~sQ~PF-~kskG~vq~v~FHPs~p~----lfVaT-----q-----------~~vRiYdL~-------- 595 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPF-RKSKGLVQRVKFHPSKPY----LFVAT-----Q-----------RSVRIYDLS-------- 595 (733)
T ss_pred cceEEEEecccccccCch-hhcCCceeEEEecCCCce----EEEEe-----c-----------cceEEEehh--------
Confidence 356777777554433110 112335567889997776 54443 1 157788872
Q ss_pred hhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
....++.|-.+...+.+.+.+|.|..|+..+.+ ..+..+|++-+.
T Consensus 596 --------kqelvKkL~tg~kwiS~msihp~GDnli~gs~d-----------~k~~WfDldlss 640 (733)
T KOG0650|consen 596 --------KQELVKKLLTGSKWISSMSIHPNGDNLILGSYD-----------KKMCWFDLDLSS 640 (733)
T ss_pred --------HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC-----------CeeEEEEcccCc
Confidence 212245565566667888999999999877765 357788877543
No 444
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.38 E-value=2.5 Score=46.54 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=59.0
Q ss_pred cccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccc
Q 003363 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (826)
Q Consensus 373 ~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (826)
.++...|+-||=.++..... .+++++|+.+.....+- .. . |..-+..+.|.
T Consensus 230 svTal~F~d~gL~~aVGts~-----------G~v~iyDLRa~~pl~~k-dh-----------~------~e~pi~~l~~~ 280 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTST-----------GSVLIYDLRASKPLLVK-DH-----------G------YELPIKKLDWQ 280 (703)
T ss_pred cceEEEecCCceeEEeeccC-----------CcEEEEEcccCCceeec-cc-----------C------Cccceeeeccc
Confidence 36778898888877755543 46999999886653221 11 1 22223456675
Q ss_pred cC-CCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeec
Q 003363 453 SD-GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (826)
Q Consensus 453 ~D-g~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 521 (826)
+. ++.-+++.+ . ..+-.||..+|+.-.......++...-+-++++ ++|++....--...|+-++.
T Consensus 281 ~~~~q~~v~S~D-k--~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 281 DTDQQNKVVSMD-K--RILKIWDECTGKPMASIEPTSDLNDFCFVPGSG-MFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred ccCCCceEEecc-h--HHhhhcccccCCceeeccccCCcCceeeecCCc-eEEEecCCCcceeEEccccC
Confidence 43 222333322 2 233445666777554433333333334455555 44444333333335554544
No 445
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.35 E-value=7 Score=39.98 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=49.9
Q ss_pred CceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 272 QPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 272 ~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
+.+|.+|+...=+ +..+ .+....+.+++..|.|| |+..-. ++..|..+|+
T Consensus 106 DG~i~iw~~~~W~~~~sl--K~H~~~Vt~lsiHPS~K-----LALsVg--------------~D~~lr~WNL-------- 156 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSL--KAHKGQVTDLSIHPSGK-----LALSVG--------------GDQVLRTWNL-------- 156 (362)
T ss_pred CCcEEEEEcCCeEEeeee--cccccccceeEecCCCc-----eEEEEc--------------CCceeeeehh--------
Confidence 3678888865432 2233 23333588999999999 555431 3336777777
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEecc
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
..|..-.+..-........|+|.|.+++....+
T Consensus 157 ---------V~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 157 ---------VRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred ---------hcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence 444333222222334559999999988766544
No 446
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.14 E-value=2.2 Score=48.64 Aligned_cols=149 Identities=13% Similarity=0.046 Sum_probs=78.7
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccC
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (826)
.++.+..-+.+|+-.+.+.+.+. |+...+........+..-..- ....-.....+..+..|.||++++++...+.+
T Consensus 253 ~~l~~~~~~~~lvsgS~D~t~rv--Wd~~sg~C~~~l~gh~stv~~--~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~ 328 (537)
T KOG0274|consen 253 WGLAFPSGGDKLVSGSTDKTERV--WDCSTGECTHSLQGHTSSVRC--LTIDPFLLVSGSRDNTVKVWDVTNGACLNLLR 328 (537)
T ss_pred eeEEEecCCCEEEEEecCCcEEe--EecCCCcEEEEecCCCceEEE--EEccCceEeeccCCceEEEEeccCcceEEEec
Confidence 67777665556666666766553 333223322222222221110 01110112234577899999999998777731
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCc-ceecCC
Q 003363 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE 369 (826)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~ 369 (826)
.....+..+... +.. ++..+ ++ ..|-++|+ .+++ ...|+.
T Consensus 329 -~h~~~V~~v~~~--~~~----lvsgs-------------~d--~~v~VW~~-----------------~~~~cl~sl~g 369 (537)
T KOG0274|consen 329 -GHTGPVNCVQLD--EPL----LVSGS-------------YD--GTVKVWDP-----------------RTGKCLKSLSG 369 (537)
T ss_pred -cccccEEEEEec--CCE----EEEEe-------------cC--ceEEEEEh-----------------hhceeeeeecC
Confidence 134455555555 554 44444 11 25667776 4444 456677
Q ss_pred CCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 370 ~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
+.+.+....+... ..++-.+.+ ..|.+||+.+.
T Consensus 370 H~~~V~sl~~~~~-~~~~Sgs~D-----------~~IkvWdl~~~ 402 (537)
T KOG0274|consen 370 HTGRVYSLIVDSE-NRLLSGSLD-----------TTIKVWDLRTK 402 (537)
T ss_pred CcceEEEEEecCc-ceEEeeeec-----------cceEeecCCch
Confidence 7766666655433 555444433 34777777776
No 447
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=94.13 E-value=1 Score=51.86 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=60.9
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC-ceeEE--EecCCCccccccCCCcccceeecCCCCeEEEEeecCCC
Q 003363 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS-QLEKE--FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (826)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~-~~~~~--~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~ 231 (826)
....++||.|+++|.....+ .+.+| +-+ ..... +.+ .=.|..| .+++||+||..|+...
T Consensus 208 ~t~~~~spn~~~~Aa~d~dG-----rI~vw~d~~~~~~~~t~t~l-HWH~~~V------~~L~fS~~G~~LlSGG----- 270 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDG-----RILVWRDFGSSDDSETCTLL-HWHHDEV------NSLSFSSDGAYLLSGG----- 270 (792)
T ss_pred ceeEEeccccceEEEeccCC-----cEEEEeccccccccccceEE-Eeccccc------ceeEEecCCceEeecc-----
Confidence 45689999999998754332 35677 322 11111 111 1122333 7999999999887642
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCC-CCccceEEEeeCCCC
Q 003363 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEG 308 (826)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg~~ 308 (826)
....|.+|.+++++.+-| |. ...+.+++||||+..
T Consensus 271 ---------------------------------------~E~VLv~Wq~~T~~kqfL---PRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 271 ---------------------------------------REGVLVLWQLETGKKQFL---PRLGSPILHIVVSPDSDL 306 (792)
T ss_pred ---------------------------------------cceEEEEEeecCCCcccc---cccCCeeEEEEEcCCCCe
Confidence 336799999999994444 43 346778999999996
No 448
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=94.11 E-value=0.18 Score=55.29 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=55.2
Q ss_pred cchHHHHHHHHCCcEE-----EE-ECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchH
Q 003363 609 SYSKSLAFLSSVGYSL-----LI-VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682 (826)
Q Consensus 609 ~~~~~~~~la~~G~~V-----l~-~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG 682 (826)
.|...++.|.+.||.. .+ .|.|-+.. ....-...+...|+.+.+.. ..+|.|+||||||
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~------------~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGg 130 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPA------------ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGG 130 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchh------------hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCc
Confidence 5778899999988853 22 56665321 00112455556666655542 5799999999999
Q ss_pred HHHHHHHHhCCC------ceeEEEecCCc
Q 003363 683 FLTTHLIGQAPD------KFVAAAARNPL 705 (826)
Q Consensus 683 ~~a~~~a~~~p~------~~~a~v~~~p~ 705 (826)
.++..++...+. .+++.|.+++.
T Consensus 131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p 159 (389)
T PF02450_consen 131 LVARYFLQWMPQEEWKDKYIKRFISIGTP 159 (389)
T ss_pred hHHHHHHHhccchhhHHhhhhEEEEeCCC
Confidence 999998887643 47788877763
No 449
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=94.05 E-value=1.9 Score=48.03 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=25.8
Q ss_pred CceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCC
Q 003363 272 QPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~ 308 (826)
+..+..||+++++.+-.. -......+-+++|.|+...
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~ 158 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPA 158 (720)
T ss_pred CceeeeeeeccceeecceeecccccccchhhhccCCCc
Confidence 467889999888765431 0233446778999999985
No 450
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.05 E-value=0.22 Score=55.84 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=61.1
Q ss_pred ceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhh
Q 003363 273 PSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (826)
Q Consensus 273 ~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (826)
..|.+||++.++ ++.| +.....+..+.|+|=|.+ . .+|. .++++..+|..
T Consensus 92 gtiK~wDleeAk~vrtL--tgh~~~~~sv~f~P~~~~----~--a~gS-------------tdtd~~iwD~R-------- 142 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTL--TGHLLNITSVDFHPYGEF----F--ASGS-------------TDTDLKIWDIR-------- 142 (825)
T ss_pred Cceeeeehhhhhhhhhh--hccccCcceeeeccceEE----e--cccc-------------ccccceehhhh--------
Confidence 579999998776 5556 444556678889998776 3 3332 23466677762
Q ss_pred hhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
.-|-...--.+.+.....+|+|||++++-... ...+.+||+..|+.
T Consensus 143 --------k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-----------d~tvki~d~~agk~ 188 (825)
T KOG0267|consen 143 --------KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-----------DNTVKIWDLTAGKL 188 (825)
T ss_pred --------ccCceeeecCCcceeEEEeecCCCceeeccCC-----------cceeeeeccccccc
Confidence 12323333335566778899999998863332 25677888766554
No 451
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=93.92 E-value=2.2 Score=48.06 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=67.3
Q ss_pred cCceEEEEEccCCceEec-cCCCCC-CccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccch
Q 003363 271 RQPSLFVININSGEVQAV-KGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l-~~~~~~-~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
.+.+|-++|+++|+.+.. +|.-++ ...--+..-|.|-+ |+-.. .++ .|..+|.
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY----~atSc-------------sdk--tl~~~Df------ 670 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY----LATSC-------------SDK--TLCFVDF------ 670 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccE----EEEee-------------cCC--ceEEEEe------
Confidence 446788899999887666 222221 23334567777766 65543 333 7888998
Q ss_pred hhhhhhhcCCCCCCcc-eecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 349 ASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
.+|+. .+.+.+...+....|++|-|+|+-.+.+ .-|++|.++.
T Consensus 671 -----------~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD-----------gCIFvW~lp~ 714 (1080)
T KOG1408|consen 671 -----------VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD-----------GCIFVWKLPL 714 (1080)
T ss_pred -----------ccchhhhhhcCcchheeeeeecccchhheeecCC-----------ceEEEEECch
Confidence 67774 5788888889999999999999877754 3488888765
No 452
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.77 E-value=2.8 Score=47.43 Aligned_cols=89 Identities=7% Similarity=-0.022 Sum_probs=47.8
Q ss_pred cceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CceeEEEecCCCcc
Q 003363 124 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVH 201 (826)
Q Consensus 124 ~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~ 201 (826)
...+.++++. ..++..+.++... ..+....-..|++...+|+...++ ...++.+... .....++.......
T Consensus 52 sS~G~lyl~~--R~~~~~~~~~~~~---~~~~~~~~~vs~~e~lvAagt~~g--~V~v~ql~~~~p~~~~~~t~~d~~~~ 124 (726)
T KOG3621|consen 52 SSAGSVYLYN--RHTGEMRKLKNEG---ATGITCVRSVSSVEYLVAAGTASG--RVSVFQLNKELPRDLDYVTPCDKSHK 124 (726)
T ss_pred cccceEEEEe--cCchhhhcccccC---ccceEEEEEecchhHhhhhhcCCc--eEEeehhhccCCCcceeeccccccCC
Confidence 3445555544 4444444444332 113355667899888888765432 2223333321 12233344333223
Q ss_pred ccccCCCcccceeecCCCCeEEEE
Q 003363 202 GSVYADGWFEGISWNSDETLIAYV 225 (826)
Q Consensus 202 g~v~~~~~~~~~~wSPDg~~ia~~ 225 (826)
..| ..+.||+||+++++.
T Consensus 125 ~rV------Tal~Ws~~~~k~ysG 142 (726)
T KOG3621|consen 125 CRV------TALEWSKNGMKLYSG 142 (726)
T ss_pred ceE------EEEEecccccEEeec
Confidence 333 899999999999874
No 453
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=93.65 E-value=12 Score=40.40 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=49.4
Q ss_pred ceEEEEEccC--CceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 273 PSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 273 ~~l~v~d~~~--g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
..+.+||..+ .....+ ......+..+.|+|+++. ++..+. ....+..+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~~-------- 185 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTL--EGHSESVTSLAFSPDGKL----LASGSS--------------LDGTIKLWDL-------- 185 (466)
T ss_pred ccEEEEEecCCCeEEEEE--ecCcccEEEEEECCCCCE----EEecCC--------------CCCceEEEEc--------
Confidence 5788888876 334444 333345558999999996 655541 1336777776
Q ss_pred hhhhhcCCCCC-CcceecCCCCccccCceecCCCCEE
Q 003363 351 ELELKESSSED-LPVVNLTESISSAFFPRFSPDGKFL 386 (826)
Q Consensus 351 ~~~~~~~~~~~-~~~~~Lt~~~~~~~~p~~SpDG~~l 386 (826)
.. .....+..+...+....|+|+|+.+
T Consensus 186 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 186 ---------RTGKPLSTLAGHTDPVSSLAFSPDGGLL 213 (466)
T ss_pred ---------CCCceEEeeccCCCceEEEEEcCCcceE
Confidence 33 3334444456678889999999833
No 454
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=93.59 E-value=1.3 Score=44.54 Aligned_cols=156 Identities=13% Similarity=0.167 Sum_probs=97.9
Q ss_pred CCccCceEEEEEccCCceE---ec--c---------CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccC
Q 003363 268 AGKRQPSLFVININSGEVQ---AV--K---------GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333 (826)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~---~l--~---------~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~ 333 (826)
++..+..|.|+|++...-. -+ + .......+..+.|-|=... +...+ . .
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG----mFtss-S-------------F 122 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG----MFTSS-S-------------F 122 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc----eeecc-c-------------c
Confidence 3446788999998754310 01 0 1112345678889997776 54333 2 2
Q ss_pred CCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCC--EEEEEeccCCCCCCCCcccceEEEEeC
Q 003363 334 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK--FLVFLSAKSSVDSGAHSATDSLHRIDW 411 (826)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~--~l~f~s~~~~~~~g~~~~~~~l~~~d~ 411 (826)
+-.|.++|. .+-+......-.+.+.+-+|||=.. -|+-...++ .++.+-|+
T Consensus 123 DhtlKVWDt-----------------nTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~----------~~VrLCDi 175 (397)
T KOG4283|consen 123 DHTLKVWDT-----------------NTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRD----------VQVRLCDI 175 (397)
T ss_pred cceEEEeec-----------------ccceeeEEeecCceeehhhcChhhhcceEEEEecCC----------CcEEEEec
Confidence 236778887 5555544444556677778887554 333333332 56888888
Q ss_pred CCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC
Q 003363 412 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 487 (826)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~ 487 (826)
.+|.-.....+.. .++..+.|+|...+++++...++..++|-|...+|-.+.|-...
T Consensus 176 ~SGs~sH~LsGHr-------------------~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 176 ASGSFSHTLSGHR-------------------DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred cCCcceeeecccc-------------------CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 8876543332222 24557789999999999988889999998888777777665443
No 455
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=93.51 E-value=10 Score=42.40 Aligned_cols=95 Identities=18% Similarity=0.180 Sum_probs=60.6
Q ss_pred ceEEEEEccCCceEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 273 PSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
-+-.+++...++++++. .++-...+...+++|+.++ ++... .++.|..+|.
T Consensus 236 ~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k----LvlGC---------------~DgSiiLyD~-------- 288 (545)
T PF11768_consen 236 ADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK----LVLGC---------------EDGSIILYDT-------- 288 (545)
T ss_pred eEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce----EEEEe---------------cCCeEEEEEc--------
Confidence 34455566566665542 2344446778899999998 88876 3347888885
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCC
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~ 415 (826)
..+ ...++...-.....+|.|||..++..+.+ ++|..+|..-+.
T Consensus 289 ---------~~~-~t~~~ka~~~P~~iaWHp~gai~~V~s~q-----------GelQ~FD~ALsp 332 (545)
T PF11768_consen 289 ---------TRG-VTLLAKAEFIPTLIAWHPDGAIFVVGSEQ-----------GELQCFDMALSP 332 (545)
T ss_pred ---------CCC-eeeeeeecccceEEEEcCCCcEEEEEcCC-----------ceEEEEEeecCc
Confidence 222 33344444446778999999977655544 457777765543
No 456
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=93.47 E-value=0.64 Score=47.98 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=85.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
.+....++|--..|+-....+ . .+++.+ ...-+.+++. .... ..++|+| +-.. |++....--
T Consensus 189 ti~svkfNpvETsILas~~sD-r--sIvLyD~R~~~Pl~KVi~-~mRT----------N~IswnP-eafn-F~~a~ED~n 252 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASD-R--SIVLYDLRQASPLKKVIL-TMRT----------NTICWNP-EAFN-FVAANEDHN 252 (433)
T ss_pred ceeEEecCCCcchheeeeccC-C--ceEEEecccCCccceeee-eccc----------cceecCc-cccc-eeecccccc
Confidence 467888898887776543222 2 244444 3333444443 3333 5899999 4444 443332222
Q ss_pred CCCccCCCC-CCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.-+++.-+. .......++.+-.-.++|+|.+.|..++.-+..|-++....+.-+.+--+..-..+..+.||-|+++
T Consensus 253 lY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky--- 329 (433)
T KOG0268|consen 253 LYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY--- 329 (433)
T ss_pred ceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE---
Confidence 222332111 1223344555556678899997787777778889999988887766521222346789999999997
Q ss_pred EEEEEee
Q 003363 312 YLVFVGW 318 (826)
Q Consensus 312 ~lvf~~~ 318 (826)
|+..++
T Consensus 330 -i~SGSd 335 (433)
T KOG0268|consen 330 -IISGSD 335 (433)
T ss_pred -EEecCC
Confidence 766653
No 457
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.45 E-value=3 Score=45.54 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=41.8
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCcceee---ee--eeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCC
Q 003363 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKL---GI--KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (826)
Q Consensus 296 ~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~---g~--~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (826)
....+.|.|||+ |++.......... +. .........|++++. ++++.+.+..+
T Consensus 125 ~~~~l~~gpDG~-----LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p-----------------dg~~~e~~a~G 182 (367)
T TIGR02604 125 SLNSLAWGPDGW-----LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP-----------------DGGKLRVVAHG 182 (367)
T ss_pred cccCceECCCCC-----EEEecccCCCceeccCCCccCcccccCceEEEEec-----------------CCCeEEEEecC
Confidence 355789999997 7775422110000 00 000012247999997 67777777766
Q ss_pred CccccCceecCCCCE
Q 003363 371 ISSAFFPRFSPDGKF 385 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~ 385 (826)
........|+|+|+.
T Consensus 183 ~rnp~Gl~~d~~G~l 197 (367)
T TIGR02604 183 FQNPYGHSVDSWGDV 197 (367)
T ss_pred cCCCccceECCCCCE
Confidence 666778999999985
No 458
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=0.35 Score=47.75 Aligned_cols=57 Identities=11% Similarity=-0.081 Sum_probs=35.5
Q ss_pred EEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003363 762 TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 823 (826)
Q Consensus 762 vLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~w~~~ 823 (826)
+.++.+++|..+|-.....+.+.... +++.+.+ .||.-..--....+-++|.+-|++
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~WPg----~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R 365 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIWPG----CEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDR 365 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhCCC----CEEEEee-cCceeeeehhchHHHHHHHHHHHh
Confidence 56678999999988666555555543 4555555 688643322223566677777765
No 459
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=93.17 E-value=0.37 Score=52.72 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=61.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCccchH-----------------HHHHHHHCCcEEEEECCCCCCCCchh
Q 003363 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----------------SLAFLSSVGYSLLIVNYRGSLGFGEE 638 (826)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-----------------~~~~la~~G~~Vl~~d~rG~~g~G~~ 638 (826)
+..|.+.+++ ...++|+|+++-|||++........ .-..+... -.++-+|.+-.+||..+
T Consensus 87 ~ffy~fe~~n--dp~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a 163 (498)
T COG2939 87 FFFYTFESPN--DPANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRA 163 (498)
T ss_pred EEEEEecCCC--CCCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCcccc
Confidence 5556666542 5678999999999998753221110 00011111 24667775544556554
Q ss_pred hhhcCCCCCCcchHHHHHHHHHHHHHc-CCC--CCCcEEEEEecchHHHHHHHHHh
Q 003363 639 ALQSLPGKVGSQDVNDVLTAIDHVIDM-GLA--NPSKVTVVGGSHGGFLTTHLIGQ 691 (826)
Q Consensus 639 ~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~--d~~rv~l~G~S~GG~~a~~~a~~ 691 (826)
.......+. ...-+|+..+.+.+.+. +.. ...+..|+|.||||+-+..+|..
T Consensus 164 ~~~e~~~d~-~~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~ 218 (498)
T COG2939 164 LGDEKKKDF-EGAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHE 218 (498)
T ss_pred cccccccch-hccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHH
Confidence 221112111 11235555555544442 111 12478999999999998877753
No 460
>PRK13613 lipoprotein LpqB; Provisional
Probab=93.12 E-value=6.1 Score=45.72 Aligned_cols=105 Identities=12% Similarity=0.088 Sum_probs=58.4
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCC----ccceeecCCcceecccEEEEeCCCCCeEEEEecCCC
Q 003363 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN 176 (826)
Q Consensus 101 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~ 176 (826)
.+..|+||+.+++... ....+++-.+... .. .+.+... .....|+|.++| .+..+ +++.
T Consensus 367 s~avS~~g~~~A~v~~--------~~~~l~vg~~~~~-~~~~~~~~~~~~~------~~Lt~PS~d~~g-~vWtv-d~~~ 429 (599)
T PRK13613 367 RVAVSRDESRAAGISA--------DGDSVYVGSLTPG-ASIGVHSWGVTAD------GRLTSPSWDGRG-DLWVV-DRDP 429 (599)
T ss_pred ceEEcCCCceEEEEcC--------CCcEEEEeccCCC-Cccccccceeecc------CcccCCcCcCCC-CEEEe-cCCC
Confidence 4556788888887632 1235555443222 22 1122111 246789999999 66655 3322
Q ss_pred CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 177 ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 177 ~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
+..+++.+. ..++... .+.. ...| ..+..++.|+||.++|.+.+..
T Consensus 430 ~~~~vl~v~~~~G~~~~-V~~~-~l~g-----~~I~~lrvSrDG~RvAvv~~~~ 476 (599)
T PRK13613 430 ADPRLLWLLQGDGEPVE-VRTP-ELDG-----HRVVAVRVARDGVRVALIVEKD 476 (599)
T ss_pred CCceEEEEEcCCCcEEE-eecc-ccCC-----CEeEEEEECCCccEEEEEEecC
Confidence 334445444 4454433 2222 1212 1348999999999999997754
No 461
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=93.00 E-value=8 Score=39.10 Aligned_cols=120 Identities=11% Similarity=0.112 Sum_probs=69.9
Q ss_pred ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCccccc
Q 003363 364 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 443 (826)
Q Consensus 364 ~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 443 (826)
.++|-.+...+...+|+.+|..+ |.+-. +...+.++|+..-+...+.-+. ... .
T Consensus 189 kTQLIAHDKEV~DIaf~~~s~~~-FASvg---------aDGSvRmFDLR~leHSTIIYE~-----------p~~-----~ 242 (364)
T KOG0290|consen 189 KTQLIAHDKEVYDIAFLKGSRDV-FASVG---------ADGSVRMFDLRSLEHSTIIYED-----------PSP-----S 242 (364)
T ss_pred eeEEEecCcceeEEEeccCccce-EEEec---------CCCcEEEEEecccccceEEecC-----------CCC-----C
Confidence 56888888889999999987764 55532 2356888998764432111100 000 0
Q ss_pred CCCCCCccccCCCEEEEEEEeCCeEEEEEEEC--CCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCC
Q 003363 444 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNV--SSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 510 (826)
Q Consensus 444 ~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl--~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~ 510 (826)
..+.+++|.+..-.+..+.. .+...+..+|+ ...-+-+|....+.+....|.|....-++++.+..
T Consensus 243 ~pLlRLswnkqDpnymATf~-~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~ 310 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFA-MDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC 310 (364)
T ss_pred CcceeeccCcCCchHHhhhh-cCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence 12346778765543322222 22334444444 44556667666677777789998877777665543
No 462
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=92.95 E-value=0.83 Score=46.63 Aligned_cols=147 Identities=16% Similarity=0.145 Sum_probs=85.1
Q ss_pred cCceEEEEEccCCceEecc---CCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccc
Q 003363 271 RQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~---~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (826)
.+..||-...+++ .+.+. ....+......+|+=|...+.-.++..+ +.+.|+++|+
T Consensus 64 ~rvtiy~c~~d~~-ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G---------------~~GvIrVid~----- 122 (385)
T KOG1034|consen 64 NRVTIYECPGDGG-IRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG---------------YLGVIRVIDV----- 122 (385)
T ss_pred cEEEEEEECCccc-eeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec---------------ceeEEEEEec-----
Confidence 4556666665552 33332 1112334456788888764322344333 2346889998
Q ss_pred hhhhhhhhcCCCCCCc-ceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeee
Q 003363 348 EASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 426 (826)
..++ ...+-.+.+.+...++-|+--+|+...+++ ..|.+||.+++.-..+-.+...
T Consensus 123 ------------~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD----------~svRlwnI~~~~Cv~VfGG~eg- 179 (385)
T KOG1034|consen 123 ------------VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD----------HSVRLWNIQTDVCVAVFGGVEG- 179 (385)
T ss_pred ------------chhhhccceeccCccchhhhcCCCCCcEEEEecCC----------ceEEEEeccCCeEEEEeccccc-
Confidence 4444 456777888899999999987777666554 4688899888554333222211
Q ss_pred eeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003363 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (826)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~ 479 (826)
+...+.++.|+.||.+|+ +. +.+-.|-.+++...+
T Consensus 180 ---------------HrdeVLSvD~~~~gd~i~-Sc--GmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 180 ---------------HRDEVLSVDFSLDGDRIA-SC--GMDHSLKLWRLNVKE 214 (385)
T ss_pred ---------------ccCcEEEEEEcCCCCeee-cc--CCcceEEEEecChhH
Confidence 222455778999998553 32 333344444444433
No 463
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.84 E-value=0.58 Score=51.96 Aligned_cols=186 Identities=8% Similarity=0.064 Sum_probs=99.5
Q ss_pred hhcccceeEEEEEEeecCCC----CccceeecCCc-ceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEE
Q 003363 120 LLANKRKKFMLSTVISKENE----NSVTFQWAPFP-VEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF 194 (826)
Q Consensus 120 ~~~~~~~~~l~~~~i~~~~~----~~~~lt~~~~~-~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 194 (826)
.+++.-.+.|++|+++.... ..-+++....+ .....+.+.+-.|.|.-|+- ++....+++|+-....++.
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs-----Ggtek~lr~wDprt~~kim 207 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS-----GGTEKDLRLWDPRTCKKIM 207 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe-----cCcccceEEecccccccee
Confidence 34455567788888864422 01122222222 11234666666777743332 2444578888654444555
Q ss_pred ecCCCccccccCCCcccceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCce
Q 003363 195 HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPS 274 (826)
Q Consensus 195 ~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~ 274 (826)
.+. +....| ..+..++||++++..+.+.+.+.|... ..........+........-+++....|.+.++..
T Consensus 208 kLr-GHTdNV------r~ll~~dDGt~~ls~sSDgtIrlWdLg--qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 208 KLR-GHTDNV------RVLLVNDDGTRLLSASSDGTIRLWDLG--QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred eee-ccccce------EEEEEcCCCCeEeecCCCceEEeeecc--ccceeeeEEeccCceEEEeeCCCcceEEecCCCCc
Confidence 543 333333 788999999999999999887644333 22222222222222222222455566677888999
Q ss_pred EEEEEccC-CceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceee
Q 003363 275 LFVININS-GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 325 (826)
Q Consensus 275 l~v~d~~~-g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~ 325 (826)
|++-|+.+ .+.+.+ ...+..+......-+... +..+++....+|+
T Consensus 279 i~~Tdl~n~~~~tli--ck~daPv~~l~~~~~~~~----~WvtTtds~I~rW 324 (735)
T KOG0308|consen 279 IYRTDLRNPAKSTLI--CKEDAPVLKLHLHEHDNS----VWVTTTDSSIKRW 324 (735)
T ss_pred EEecccCCchhheEe--ecCCCchhhhhhccccCC----ceeeeccccceec
Confidence 99999987 344444 333334444444444444 4344444433333
No 464
>PRK13615 lipoprotein LpqB; Provisional
Probab=92.71 E-value=7 Score=44.60 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=39.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
....|+|.++| .+..+.+.. ...+... ..|.... +..+....+. +..+..|+||.++|.+.+..
T Consensus 374 ~Lt~PS~d~~g-~vWtv~~g~---~~~l~~~~~~G~~~~-v~v~~~~~~~------I~~lrvSrDG~R~Avi~~~~ 438 (557)
T PRK13615 374 GLVAPSLDAQG-YVWSTPASD---PRGLVAWGPDGVGHP-VAVSWTATGR------VVSLEVARDGARVLVQLETG 438 (557)
T ss_pred ccccCcCcCCC-CEEEEeCCC---ceEEEEecCCCceEE-eeccccCCCe------eEEEEeCCCccEEEEEEecC
Confidence 46789999999 776554432 2233333 3344433 2343333233 48999999999999997654
No 465
>PRK13613 lipoprotein LpqB; Provisional
Probab=92.70 E-value=4.9 Score=46.44 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=50.6
Q ss_pred cccCceecCCCCEEEEEeccCCCCCCCCcccceEEE--EeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCc
Q 003363 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR--IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 450 (826)
Q Consensus 373 ~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 450 (826)
.+...+.|+||.+++++.... +..+|++ +--+.++...++. ...+... - ..+..+.
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~--------g~~~v~va~V~R~~~G~~~l~~----~~~l~~~--l--------~~v~~~~ 513 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKD--------GRRSLQIGRIVRDAKAVVSVEE----FRSLAPE--L--------EDVTDMS 513 (599)
T ss_pred EeEEEEECCCccEEEEEEecC--------CCcEEEEEEEEeCCCCcEEeec----cEEeccC--C--------CccceeE
Confidence 578899999999999998753 2234544 3323333222211 1111000 0 1245788
Q ss_pred cccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 451 WLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 451 ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
|..++..+++.....+...+|.+++++....
T Consensus 514 W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~ 544 (599)
T PRK13613 514 WAGDSQLVVLGREEGGVQQARYVQVDGSTPP 544 (599)
T ss_pred EcCCCEEEEEeccCCCCcceEEEecCCcCcc
Confidence 9988874444544455778999999865543
No 466
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.67 E-value=8.8 Score=41.04 Aligned_cols=98 Identities=20% Similarity=0.186 Sum_probs=50.2
Q ss_pred CccccCceecCCCCEEEEEeccCCCCCCCC-----cccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCC
Q 003363 371 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAH-----SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (826)
Q Consensus 371 ~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~-----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 445 (826)
+......+++|||+.|+......-...|.. ....+|+.+|..+.+.. .... ..++-..+... ....
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~~--~y~ld~~~~~~-----~~~~ 216 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP--VAEY--AYPLDPPPTAP-----GDNG 216 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCcc--ceEE--EEeCCcccccc-----CCCC
Confidence 344677899999997765554431111111 11256777887663321 0000 11110000000 1124
Q ss_pred CCCCccccCCCEEEEEEEe----CCeEEEEEEECCC
Q 003363 446 ILSNPWLSDGCTMLLSSIW----GSSQVIISVNVSS 477 (826)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~----~~~~~l~~vdl~t 477 (826)
+..+.+.+|++.|++.... ....+||.+++..
T Consensus 217 isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 217 ISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred ceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 5678889999866665542 3456788888753
No 467
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=92.64 E-value=3.6 Score=42.19 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=67.5
Q ss_pred cCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchh
Q 003363 271 RQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (826)
..+.|+++|+.+++.. .+ ......+....+.|+..+ |+..+.. +..|..+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~--~ghG~sINeik~~p~~~q----lvls~Sk--------------D~svRlwnI------- 165 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNY--RGHGGSINEIKFHPDRPQ----LVLSASK--------------DHSVRLWNI------- 165 (385)
T ss_pred ceeEEEEEecchhhhccce--eccCccchhhhcCCCCCc----EEEEecC--------------CceEEEEec-------
Confidence 3578999999887754 33 344456778889999988 8777632 236777777
Q ss_pred hhhhhhcCCCCCCcceecCCC----CccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCC
Q 003363 350 SELELKESSSEDLPVVNLTES----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (826)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Lt~~----~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~ 414 (826)
.+.....+..+ ...+.+..||+||.+|+--..+ .+|.+|+++..
T Consensus 166 ----------~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD-----------hslk~W~l~~~ 213 (385)
T KOG1034|consen 166 ----------QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD-----------HSLKLWRLNVK 213 (385)
T ss_pred ----------cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc-----------ceEEEEecChh
Confidence 66666666543 4468899999999988744433 46777777753
No 468
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.49 E-value=4 Score=43.34 Aligned_cols=225 Identities=13% Similarity=0.060 Sum_probs=120.7
Q ss_pred CCCCcEEEEEcCCCCCCCCccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
+...|+|+.+-..+ .. ............+.||.++.+-.+-..- .+ ...............+..+.+....
T Consensus 36 ~s~k~Iv~~~gWag-~~-~r~l~ky~~~Yq~~g~~~~~~tap~~~~---~~----~~s~~~~sl~~~~~~l~~L~~~~~~ 106 (350)
T KOG2521|consen 36 ESEKPIVVLLGWAG-AI-DRNLMKYSKIYQDKGYIVVRITAPCPSV---FL----SASRRILSLSLASTRLSELLSDYNS 106 (350)
T ss_pred CccccEEEEeeecc-cc-chhHHHHHHHHhcCCceEEEecCccccc---cc----ccccccchhhHHHHHHHHHhhhccC
Confidence 34448777774433 22 2244456677788999998887654221 11 1122222344555566666665558
Q ss_pred CCCcEEEEEecchHHHHHHHH---H-hC-C---CceeEEE-ecCCcc-----chhhhccCCCCCCchhhhhccCcC---C
Q 003363 669 NPSKVTVVGGSHGGFLTTHLI---G-QA-P---DKFVAAA-ARNPLC-----NLALMVGTTDIPDWCYVESYGSKG---K 731 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a---~-~~-p---~~~~a~v-~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~ 731 (826)
|+.++.+.-+|+||.+.+... . ++ | +++...+ ..+|.. +...+......... ...+.... .
T Consensus 107 ~~~pi~fh~FS~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~i~ 184 (350)
T KOG2521|consen 107 DPCPIIFHVFSGNGVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPARSSPVQLGWAVSFSSPPDDY--VARWARLNYHIT 184 (350)
T ss_pred CcCceEEEEecCCceeehHHHHHHHhhcCchhHhhcCCceEeccccccchhhhcceeccccCchhh--HHHHHhcCeEEE
Confidence 899999999999998765544 1 12 2 1222222 112211 11111111100000 00000000 0
Q ss_pred ccCCCCCCh--hhHHHHhhcCcc-------c----ccCCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEEeC
Q 003363 732 DSFTESPSV--EDLTRFHSKSPI-------S----HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 798 (826)
Q Consensus 732 ~~~~~~~~~--~~~~~~~~~sp~-------~----~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~p 798 (826)
...+....+ ..........+. . .......+.|.+.+..|.++|..+.+++.+..+.+|+.++-+-+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ 264 (350)
T KOG2521|consen 185 LLTMAGNEGGAYLLGPLAEKISMSRKYHFLDRYEEQRNELPWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFK 264 (350)
T ss_pred EEEeeecccchhhhhhhhhccccccchHHHHHHHhhhhcccccceeecCCccccccHHHHHHHHHHHHhcCceEEEeecc
Confidence 000000000 000000000000 0 011113567888899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003363 799 NDVHGIERPQSDFESFLNIGLWFKKY 824 (826)
Q Consensus 799 ~~~H~~~~~~~~~~~~~~i~~w~~~~ 824 (826)
+.-|............+...+|++..
T Consensus 265 ds~H~~h~r~~p~~y~~~~~~Fl~~~ 290 (350)
T KOG2521|consen 265 DSEHVAHFRSFPKTYLKKCSEFLRSV 290 (350)
T ss_pred CccceeeeccCcHHHHHHHHHHHHhc
Confidence 99998765555667888999999865
No 469
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=92.45 E-value=3.3 Score=43.63 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=51.1
Q ss_pred EEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhh
Q 003363 275 LFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELEL 354 (826)
Q Consensus 275 l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 354 (826)
+.++....+..+.+ ...-..+.+++||||++. |+ +++ |+..|++...+
T Consensus 134 ~di~s~~~~~~~~~--lGhvSml~dVavS~D~~~----Ii-taD--------------RDEkIRvs~yp----------- 181 (390)
T KOG3914|consen 134 FDILSADSGRCEPI--LGHVSMLLDVAVSPDDQF----II-TAD--------------RDEKIRVSRYP----------- 181 (390)
T ss_pred eeeecccccCcchh--hhhhhhhheeeecCCCCE----EE-Eec--------------CCceEEEEecC-----------
Confidence 44444444555554 222235679999999985 55 443 33456666653
Q ss_pred hcCCCCCCccee-cCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 355 KESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 355 ~~~~~~~~~~~~-Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
+.-.+.. ..++...+..+..-++ ..|+ .+ ++..+|++||+.+|...
T Consensus 182 -----a~f~IesfclGH~eFVS~isl~~~-~~Ll-S~----------sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 182 -----ATFVIESFCLGHKEFVSTISLTDN-YLLL-SG----------SGDKTLRLWDITSGKLL 228 (390)
T ss_pred -----cccchhhhccccHhheeeeeeccC-ceee-ec----------CCCCcEEEEecccCCcc
Confidence 2222222 2234445666665443 3333 22 23467999999887753
No 470
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.43 E-value=11 Score=42.07 Aligned_cols=203 Identities=10% Similarity=0.105 Sum_probs=111.5
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEEeecCCCC
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~~~~ 232 (826)
.+-.+.+.|---+++-.--+ | -..|| ......+.+++.... +....|=+--.+|+..+++...+
T Consensus 15 RVKsVd~HPtePw~la~Lyn--G---~V~IWnyetqtmVksfeV~~~P---------vRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYN--G---DVQIWNYETQTMVKSFEVSEVP---------VRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred ceeeeecCCCCceEEEeeec--C---eeEEEecccceeeeeeeecccc---------hhhheeeeccceEEEecCCceEE
Confidence 46666777776666543332 2 25566 333444555543221 24555666666676666554332
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCcc
Q 003363 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (826)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (826)
.|+.......+.+..|..++...+-.|.--..++...+..|.+||-+.+= ..+.. ......+-+++|.|.....
T Consensus 81 --Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf-eGH~HyVMqv~fnPkD~nt-- 155 (794)
T KOG0276|consen 81 --VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF-EGHEHYVMQVAFNPKDPNT-- 155 (794)
T ss_pred --EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE-cCcceEEEEEEecCCCccc--
Confidence 23333333444455566666544444433333444456778888876542 22331 2334467899999965541
Q ss_pred EEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEec
Q 003363 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (826)
Q Consensus 312 ~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~ 391 (826)
.+..+ .++ .+-++.+. ..-...+|..+...+....|-+-|.+=+.++.
T Consensus 156 -FaS~s-------------LDr--TVKVWslg----------------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg 203 (794)
T KOG0276|consen 156 -FASAS-------------LDR--TVKVWSLG----------------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG 203 (794)
T ss_pred -eeeee-------------ccc--cEEEEEcC----------------CCCCceeeeccccCcceEEeccCCCcceEEec
Confidence 33332 223 56666662 23334567777777888888877765555554
Q ss_pred cCCCCCCCCcccceEEEEeCCCCCCC
Q 003363 392 KSSVDSGAHSATDSLHRIDWPTNGNF 417 (826)
Q Consensus 392 ~~~~~~g~~~~~~~l~~~d~~~~~~~ 417 (826)
.+ ...+.+||.++..-.
T Consensus 204 aD---------D~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 204 AD---------DLTIKVWDYQTKSCV 220 (794)
T ss_pred CC---------CceEEEeecchHHHH
Confidence 32 256888998885543
No 471
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=92.33 E-value=3.6 Score=44.13 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=29.5
Q ss_pred ceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccEEEEEe
Q 003363 273 PSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVG 317 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~lvf~~ 317 (826)
.+||+|.+.+|+.-.+ ...+ ..+.-..||-||+. |+-.+
T Consensus 103 g~lYlWelssG~LL~v--~~aHYQ~ITcL~fs~dgs~----iiTgs 142 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNV--LSAHYQSITCLKFSDDGSH----IITGS 142 (476)
T ss_pred CcEEEEEeccccHHHH--HHhhccceeEEEEeCCCcE----EEecC
Confidence 6799999999987665 3333 36778899999996 65555
No 472
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=92.30 E-value=19 Score=40.43 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=35.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCeEEEE
Q 003363 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 225 (826)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~ 225 (826)
..+...+|-| |+.+++...++ +....|+ ++..... .+-.+..|.| ....|+|+..-++..
T Consensus 101 nAifDl~wap-ge~~lVsasGD----sT~r~Wdvk~s~l~G~-~~~~GH~~Sv------kS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 101 NAIFDLKWAP-GESLLVSASGD----STIRPWDVKTSRLVGG-RLNLGHTGSV------KSECFMPTNPAVFCT 162 (720)
T ss_pred ceeEeeccCC-CceeEEEccCC----ceeeeeeeccceeecc-eeeccccccc------chhhhccCCCcceee
Confidence 4588899999 77665544433 3455552 2222211 1223455555 788999999865554
No 473
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.29 E-value=10 Score=41.26 Aligned_cols=58 Identities=17% Similarity=0.128 Sum_probs=38.1
Q ss_pred CCCCccccCCCEEEEEEEeC-----------------CeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEE
Q 003363 446 ILSNPWLSDGCTMLLSSIWG-----------------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 505 (826)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~-----------------~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (826)
...+.|.|||+ ||++.... ....++++|.++++.+.+..+.....-..|+++|+ ++++
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~t 200 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFC 200 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEE
Confidence 45788999996 77754421 01369999999988888765544333456777665 4443
No 474
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.27 E-value=6.5 Score=39.56 Aligned_cols=174 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccccc
Q 003363 267 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (826)
Q Consensus 267 ~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (826)
|.......|-.+|..+|+++.+. .........+..-|||. ..++- ....|-++|.
T Consensus 77 ft~qg~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~-----~Witd---------------~~~aI~R~dp---- 131 (353)
T COG4257 77 FTAQGTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGS-----AWITD---------------TGLAIGRLDP---- 131 (353)
T ss_pred EecCccccceecCCCCCceEEEe-cCCCCCCceEEECCCCC-----eeEec---------------CcceeEEecC----
Q ss_pred chhhhhhhhcCCCCCCcceecCCC----CccccCceecCCCCEEEEEeccCCCCCCCCc----ccceEEEEeCCCCCCCC
Q 003363 347 SEASELELKESSSEDLPVVNLTES----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS----ATDSLHRIDWPTNGNFS 418 (826)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~Lt~~----~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~----~~~~l~~~d~~~~~~~~ 418 (826)
++.+.++.+-. ..+...+.|-++|. |.|+... |.++ ....|.+++.+-|.
T Consensus 132 -------------kt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~-----G~yGrLdPa~~~i~vfpaPqG~--- 189 (353)
T COG4257 132 -------------KTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQI-----GAYGRLDPARNVISVFPAPQGG--- 189 (353)
T ss_pred -------------cccceEEeecccccCCCcccceeeCCCcc-EEEeecc-----ccceecCcccCceeeeccCCCC---
Q ss_pred cccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CeeeEEEe
Q 003363 419 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLT 496 (826)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~--~~~~~~~s 496 (826)
....++-.|||. ++|++ -....|-++|..++..+.+..... ..+...++
T Consensus 190 --------------------------gpyGi~atpdGs-vwyas--lagnaiaridp~~~~aev~p~P~~~~~gsRriws 240 (353)
T COG4257 190 --------------------------GPYGICATPDGS-VWYAS--LAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWS 240 (353)
T ss_pred --------------------------CCcceEECCCCc-EEEEe--ccccceEEcccccCCcceecCCCccccccccccc
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEe
Q 003363 497 LDGDNIIAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 497 ~dg~~l~~~~s~~~~p~~l~~~~ 519 (826)
..-+.+..+...... ++.++
T Consensus 241 dpig~~wittwg~g~---l~rfd 260 (353)
T COG4257 241 DPIGRAWITTWGTGS---LHRFD 260 (353)
T ss_pred CccCcEEEeccCCce---eeEeC
No 475
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=92.16 E-value=12 Score=37.49 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=27.2
Q ss_pred CCCccccCceecCCCC-EEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 369 ESISSAFFPRFSPDGK-FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 369 ~~~~~~~~p~~SpDG~-~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
.+.+..+..+|||-|- -|+|.+.. ...+++.|+.+...
T Consensus 248 ~hnGa~R~c~Fsl~g~lDLLf~sEh----------fs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 248 HHNGAFRVCRFSLYGLLDLLFISEH----------FSRVHVVDTRNYVN 286 (344)
T ss_pred CCCCceEEEEecCCCcceEEEEecC----------cceEEEEEcccCce
Confidence 3678889999998663 36677653 35688999877554
No 476
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.10 E-value=1.6 Score=44.18 Aligned_cols=140 Identities=16% Similarity=0.092 Sum_probs=73.8
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEE--EeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVV--WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~--wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (826)
..|..+|..+|+...-..... ...... -.++++. ++... ....|+.+|+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~----v~~~~---------------~~~~l~~~d~-------- 53 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGP--GIGGPVATAVPDGGR----VYVAS---------------GDGNLYALDA-------- 53 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSS--SCSSEEETEEEETTE----EEEEE---------------TTSEEEEEET--------
T ss_pred CEEEEEECCCCCEEEEEECCC--CCCCccceEEEeCCE----EEEEc---------------CCCEEEEEEC--------
Confidence 678999998887654421211 122333 4446664 55443 3348999998
Q ss_pred hhhhhcCCCCCCcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCc-ccceeeeeee
Q 003363 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPV 429 (826)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~ 429 (826)
.+|+...-.........+. ..++..|++...+ ..|+.+|..+|+..-. ....
T Consensus 54 ---------~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~-----------~~l~~~d~~tG~~~W~~~~~~------ 106 (238)
T PF13360_consen 54 ---------KTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSD-----------GSLYALDAKTGKVLWSIYLTS------ 106 (238)
T ss_dssp ---------TTSEEEEEEECSSCGGSGE-EEETTEEEEEETT-----------SEEEEEETTTSCEEEEEEE-S------
T ss_pred ---------CCCCEEEEeecccccccee-eecccccccccce-----------eeeEecccCCcceeeeecccc------
Confidence 6776543332222222222 3445556555522 3799999888765211 0000
Q ss_pred eeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003363 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (826)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~ 481 (826)
. .... .........++..+++... ...|+.+|+.+|++.
T Consensus 107 ----~-~~~~-----~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 107 ----S-PPAG-----VRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLL 145 (238)
T ss_dssp ----S-CTCS-----TB--SEEEEETTEEEEEET---CSEEEEEETTTTEEE
T ss_pred ----c-cccc-----cccccCceEecCEEEEEec---cCcEEEEecCCCcEE
Confidence 0 0000 0012223334666766532 567999999999874
No 477
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.93 E-value=17 Score=37.44 Aligned_cols=85 Identities=13% Similarity=0.170 Sum_probs=57.0
Q ss_pred cCceEEEEEccCCce---EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccc
Q 003363 271 RQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~---~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (826)
..++|-+.|+...+. ..+ ...+..+..++.+-+|.. |+-.+. ...-|.++|.
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I--~AH~s~Iacv~Ln~~Gt~----vATaSt--------------kGTLIRIFdt----- 211 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSII--NAHDSDIACVALNLQGTL----VATAST--------------KGTLIRIFDT----- 211 (346)
T ss_pred ccceEEEEEhhhcCcCCceEE--EcccCceeEEEEcCCccE----EEEecc--------------CcEEEEEEEc-----
Confidence 347788888876555 455 455567778999999997 666552 1124666776
Q ss_pred hhhhhhhhcCCCCCCc-ceecCCC--CccccCceecCCCCEEEEEecc
Q 003363 348 EASELELKESSSEDLP-VVNLTES--ISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 348 ~~~~~~~~~~~~~~~~-~~~Lt~~--~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
.+|+ ...+..+ ...+...+||||+++|+..|.+
T Consensus 212 ------------~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 212 ------------EDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred ------------CCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence 4443 3444333 2347789999999999988866
No 478
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=91.89 E-value=0.36 Score=44.32 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC-------CCceeEEEecCCcc
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-------PDKFVAAAARNPLC 706 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~-------p~~~~a~v~~~p~~ 706 (826)
.+.+...++.+.++.. ..+|.+.|||+||.+|..++... +..+++....+|.+
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 4456666666666643 47899999999999998877642 13466666666644
No 479
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=32 Score=41.36 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=39.4
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCC--CccccccCCCcccceeecCCCCeEEEEeecC
Q 003363 159 VVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (826)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~g~v~~~~~~~~~~wSPDg~~ia~~~~~~ 229 (826)
...|||.+++++.++... .|+-.. .....+-.+.. ..++..+.++.+..+.|||.|+.|+|+-+..
T Consensus 102 ~~~s~d~~~~~~~~~~~~----~~rhs~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~~n 169 (755)
T KOG2100|consen 102 DLISPDRKYILLGRNYKK----RFRHSY-TAKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLHNN 169 (755)
T ss_pred cccChhhhhheeccCccc----ccceee-EEEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEecc
Confidence 478999999998766431 111110 00111111111 2355555666668899999999999997754
No 480
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=91.60 E-value=0.4 Score=44.94 Aligned_cols=40 Identities=25% Similarity=0.179 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhCCC
Q 003363 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (826)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~ 694 (826)
..+...++..... ....+|.++|||+||.+|..++.....
T Consensus 12 ~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~~ 51 (153)
T cd00741 12 NLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLRG 51 (153)
T ss_pred HHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHHh
Confidence 3344444444333 245789999999999999988876543
No 481
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=91.47 E-value=1.1 Score=43.95 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=49.5
Q ss_pred ccchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHH-HHHHHHHcCCCCCCcEEEEEecchHHHHH
Q 003363 608 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGLANPSKVTVVGGSHGGFLTT 686 (826)
Q Consensus 608 ~~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~~d~~rv~l~G~S~GG~~a~ 686 (826)
..|......+.. .+.|+.++.+|.+. .. .....++++.. .++.+.+. ....++.++|||+||.++.
T Consensus 13 ~~~~~~~~~l~~-~~~v~~~~~~g~~~---~~-------~~~~~~~~~~~~~~~~l~~~--~~~~~~~l~g~s~Gg~~a~ 79 (212)
T smart00824 13 HEYARLAAALRG-RRDVSALPLPGFGP---GE-------PLPASADALVEAQAEAVLRA--AGGRPFVLVGHSSGGLLAH 79 (212)
T ss_pred HHHHHHHHhcCC-CccEEEecCCCCCC---CC-------CCCCCHHHHHHHHHHHHHHh--cCCCCeEEEEECHHHHHHH
Confidence 345566666643 58999999988431 10 11112333333 22333332 2346799999999999998
Q ss_pred HHHHh---CCCceeEEEecCC
Q 003363 687 HLIGQ---APDKFVAAAARNP 704 (826)
Q Consensus 687 ~~a~~---~p~~~~a~v~~~p 704 (826)
.++.+ .++.+..+++..+
T Consensus 80 ~~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 80 AVAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred HHHHHHHhCCCCCcEEEEEcc
Confidence 87775 3445666665543
No 482
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.95 E-value=21 Score=39.70 Aligned_cols=18 Identities=11% Similarity=-0.162 Sum_probs=13.4
Q ss_pred CCCccccCCCEEEEEEEeC
Q 003363 447 LSNPWLSDGCTMLLSSIWG 465 (826)
Q Consensus 447 ~~~~ws~Dg~~l~~~~~~~ 465 (826)
..+.|.|||+ ||++....
T Consensus 149 grI~FgPDG~-LYVs~GD~ 166 (454)
T TIGR03606 149 GRLVFGPDGK-IYYTIGEQ 166 (454)
T ss_pred ceEEECCCCc-EEEEECCC
Confidence 4778999996 77766544
No 483
>PLN02606 palmitoyl-protein thioesterase
Probab=90.95 E-value=2.5 Score=43.74 Aligned_cols=103 Identities=19% Similarity=0.202 Sum_probs=57.7
Q ss_pred CCCcEEEEEcCCCCCCCCccchHHHHHHHH-CCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHHHHHHHcCCC
Q 003363 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (826)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (826)
.+.| ||+.||-+.......+....+.+.+ .|+-+..+- .|. +. ...+.....+.+..+.+.+.+.+.+
T Consensus 25 ~~~P-vViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~---~~------~~s~~~~~~~Qv~~vce~l~~~~~L 93 (306)
T PLN02606 25 LSVP-FVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGN---GV------QDSLFMPLRQQASIACEKIKQMKEL 93 (306)
T ss_pred CCCC-EEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECC---Cc------ccccccCHHHHHHHHHHHHhcchhh
Confidence 3556 5567996543334466666666642 366544443 221 11 0111111223344444444443333
Q ss_pred CCCcEEEEEecchHHHHHHHHHhCCC--ceeEEEecCC
Q 003363 669 NPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 704 (826)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p 704 (826)
. +-+.++|+|.||.+.-.++.++|+ .++-.|..++
T Consensus 94 ~-~G~naIGfSQGglflRa~ierc~~~p~V~nlISlgg 130 (306)
T PLN02606 94 S-EGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGG 130 (306)
T ss_pred c-CceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecC
Confidence 2 458999999999999999998876 3666665543
No 484
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=90.34 E-value=0.39 Score=46.83 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=46.3
Q ss_pred cEEEEECCCCCCCCchh-hhhcCCCCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHHhC
Q 003363 622 YSLLIVNYRGSLGFGEE-ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA 692 (826)
Q Consensus 622 ~~Vl~~d~rG~~g~G~~-~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~~~ 692 (826)
..|++|=||=..-.... ...............|+.+|.++.+++. -+..++.|+|||.|+.+...++.+.
T Consensus 46 ~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~-n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 46 CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANY-NNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhc-CCCCCEEEEEeChHHHHHHHHHHHH
Confidence 57889988854322111 0000011122334789999999888874 2346899999999999999998764
No 485
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=90.22 E-value=1 Score=46.13 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=46.2
Q ss_pred CCCCcEEEEEcCCCCCCC-CccchHHHHHHH--HCCcEEEEECCCCCCCCchhhhhcCCCCCCcchHHHHHHHH-HHHHH
Q 003363 589 CSCDPLIVVLHGGPHSVS-LSSYSKSLAFLS--SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVID 664 (826)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~-~~~~~~~~~~la--~~G~~Vl~~d~rG~~g~G~~~~~~~~~~~~~~~~~D~~~~i-~~l~~ 664 (826)
..+.| ||+.||-+.... ...+......+. --|..|..++.-. + ...+...... ..+.+..+.+ +.+.+
T Consensus 3 ~~~~P-vViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig~-~-~~~D~~~s~f-----~~v~~Qv~~vc~~l~~ 74 (279)
T PF02089_consen 3 PSPLP-VVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIGN-D-PSEDVENSFF-----GNVNDQVEQVCEQLAN 74 (279)
T ss_dssp TSS---EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SSS-S-HHHHHHHHHH-----SHHHHHHHHHHHHHHH
T ss_pred CCCCc-EEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEECC-C-cchhhhhhHH-----HHHHHHHHHHHHHHhh
Confidence 34556 556799554322 223333333332 2366677776421 1 0001111100 1234443333 33333
Q ss_pred cCCCCCCcEEEEEecchHHHHHHHHHhCCC-ceeEEEecCC
Q 003363 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 704 (826)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p 704 (826)
.+.+. +-+.++|+|.||.+.-.++.++++ .++-.|..++
T Consensus 75 ~p~L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 75 DPELA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp -GGGT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred Chhhh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 33332 469999999999999999988865 4676666554
No 486
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.10 E-value=5.7 Score=42.61 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=38.3
Q ss_pred CCCccccCCCEEEEEEEeCC-----------eEEEEEEECCCC-------------cEEEecCCCCCeeeEEEeecCCEE
Q 003363 447 LSNPWLSDGCTMLLSSIWGS-----------SQVIISVNVSSG-------------ELLRITPAESNFSWSLLTLDGDNI 502 (826)
Q Consensus 447 ~~~~ws~Dg~~l~~~~~~~~-----------~~~l~~vdl~tg-------------~~~~lt~~~~~~~~~~~s~dg~~l 502 (826)
..+.|.||| .||++....+ ...|++++.++. ..+.+..+-.+.....|.+..+.|
T Consensus 117 ~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l 195 (331)
T PF07995_consen 117 GGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRL 195 (331)
T ss_dssp EEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEE
T ss_pred ccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcE
Confidence 368899999 6888775432 236888886542 011111111112223556665677
Q ss_pred EEEEeCCCCCCeEEEEe
Q 003363 503 IAVSSSPVDVPQVKYGY 519 (826)
Q Consensus 503 ~~~~s~~~~p~~l~~~~ 519 (826)
++.-.+....-+|.++.
T Consensus 196 ~~~d~G~~~~dein~i~ 212 (331)
T PF07995_consen 196 WAADNGPDGWDEINRIE 212 (331)
T ss_dssp EEEEE-SSSSEEEEEE-
T ss_pred EEEccCCCCCcEEEEec
Confidence 77777777666676654
No 487
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=90.08 E-value=6.3 Score=43.93 Aligned_cols=152 Identities=11% Similarity=0.055 Sum_probs=82.4
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecC-cc-eeeeeeeeccCCCceEEEEcccccch
Q 003363 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS-ET-RKLGIKYCYNRPCALYAVRVSLYKSE 348 (826)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~-~~-~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (826)
.+.+|.++...+++.+.+.-.-.+..+-.+.||-...+ .+++-... .. ..... +-.++++
T Consensus 182 draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~----qi~tVE~s~s~~g~~~~--------d~ciYE~------ 243 (545)
T PF11768_consen 182 DRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPY----QIHTVEQSISVKGEPSA--------DSCIYEC------ 243 (545)
T ss_pred hhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCc----EEEEEEEecCCCCCcee--------EEEEEEe------
Confidence 45789999998888887731222334456778875555 55543211 10 00111 1223332
Q ss_pred hhhhhhhcCCCCCCcceecC----CCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCccccee
Q 003363 349 ASELELKESSSEDLPVVNLT----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (826)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt----~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 424 (826)
...+.+++. .-...+...++||+.++|+..-.+ ..|.++|...+-.+. +..
T Consensus 244 -----------~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~D-----------gSiiLyD~~~~~t~~-~ka-- 298 (545)
T PF11768_consen 244 -----------SRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCED-----------GSIILYDTTRGVTLL-AKA-- 298 (545)
T ss_pred -----------ecCceeEEEEEEEecCCcceEEecCcccceEEEEecC-----------CeEEEEEcCCCeeee-eee--
Confidence 112222221 123456778999999999988766 358899876543221 100
Q ss_pred eeeeeeeccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003363 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (826)
Q Consensus 425 ~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt 484 (826)
.+ .+..++|.|||. +++..+..|..++|-+-+..=+.+-+.
T Consensus 299 ~~------------------~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLls 339 (545)
T PF11768_consen 299 EF------------------IPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLS 339 (545)
T ss_pred cc------------------cceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeecc
Confidence 11 123678999997 555555566666665555443443333
No 488
>PRK13614 lipoprotein LpqB; Provisional
Probab=90.00 E-value=15 Score=42.21 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=36.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCeEEEE
Q 003363 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 225 (826)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~wSPDg~~ia~~ 225 (826)
....++.|+||+.+|++.. +...++..+.++..+.+..- ... ..++|.++| .|..+
T Consensus 344 ~~~s~avS~~g~~~A~~~~---~~~~l~~~~~g~~~~~~~~g-~~L----------t~PS~d~~g-~vWtv 399 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNG---SRTTLYTVSPGQPARALTSG-STL----------TRPSFSPQD-WVWTA 399 (573)
T ss_pred cccceeecCCCceEEEecC---CCcEEEEecCCCcceeeecC-CCc----------cCCcccCCC-CEEEe
Confidence 4678899999999999833 22356656655544444432 223 689999998 55433
No 489
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=89.91 E-value=23 Score=35.94 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=25.9
Q ss_pred ceEEEEEccCCc----eEeccCCCCCCccceEEEeeCCCC
Q 003363 273 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEG 308 (826)
Q Consensus 273 ~~l~v~d~~~g~----~~~l~~~~~~~~~~~~~wSPDg~~ 308 (826)
..--+||+++|. -++| +..+-.+.+++|+-+|..
T Consensus 173 TTCTiWdie~~~~~~vkTQL--IAHDKEV~DIaf~~~s~~ 210 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQL--IAHDKEVYDIAFLKGSRD 210 (364)
T ss_pred CeEEEEEEeeccccceeeEE--EecCcceeEEEeccCccc
Confidence 456678888873 2466 778888999999997776
No 490
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=89.88 E-value=1.2 Score=37.05 Aligned_cols=84 Identities=12% Similarity=-0.023 Sum_probs=51.2
Q ss_pred eEEEeeCCCCCccEEEEEeecCcceeeeee---eeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 003363 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIK---YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 375 (826)
Q Consensus 299 ~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~---~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~ 375 (826)
++..++|+.. |+|+-.+..-....+. ......+.|+++|. .+++.+.|-.+.....
T Consensus 2 dldv~~~~g~----vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp-----------------~t~~~~vl~~~L~fpN 60 (89)
T PF03088_consen 2 DLDVDQDTGT----VYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDP-----------------STKETTVLLDGLYFPN 60 (89)
T ss_dssp EEEE-TTT------EEEEES-SS--TTGHHHHHHHT---EEEEEEET-----------------TTTEEEEEEEEESSEE
T ss_pred ceeEecCCCE----EEEEeCccccCccceeeeeecCCCCcCEEEEEC-----------------CCCeEEEehhCCCccC
Confidence 4567788555 8887533220000000 01134457999998 8888888888777788
Q ss_pred CceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCC
Q 003363 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (826)
Q Consensus 376 ~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~ 413 (826)
..+.|||++.|++...- ..+|+++.+.+
T Consensus 61 GVals~d~~~vlv~Et~----------~~Ri~rywl~G 88 (89)
T PF03088_consen 61 GVALSPDESFVLVAETG----------RYRILRYWLKG 88 (89)
T ss_dssp EEEE-TTSSEEEEEEGG----------GTEEEEEESSS
T ss_pred eEEEcCCCCEEEEEecc----------CceEEEEEEeC
Confidence 89999999998877654 36788886643
No 491
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.82 E-value=39 Score=38.07 Aligned_cols=160 Identities=11% Similarity=0.087 Sum_probs=87.6
Q ss_pred cceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCC-ceeEEEecCCCc
Q 003363 124 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQS-QLEKEFHVPQTV 200 (826)
Q Consensus 124 ~~~~~l~~~~i~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~-~~~~~~~~~~~~ 200 (826)
+.+.+|.++..+ ...+..++..++ ..+...+..|.--+++..+++- ++.+| ..+ ...+.+. +.
T Consensus 74 sDD~~IrVfnyn-t~ekV~~FeAH~-----DyIR~iavHPt~P~vLtsSDDm-----~iKlW~we~~wa~~qtfe---GH 139 (794)
T KOG0276|consen 74 SDDMQIRVFNYN-TGEKVKTFEAHS-----DYIRSIAVHPTLPYVLTSSDDM-----TIKLWDWENEWACEQTFE---GH 139 (794)
T ss_pred cCCceEEEEecc-cceeeEEeeccc-----cceeeeeecCCCCeEEecCCcc-----EEEEeeccCceeeeeEEc---Cc
Confidence 344555555553 233445555554 5688888999888777655442 66777 222 2223332 21
Q ss_pred cccccCCCcccceeecCC-CCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCC--ccCCCccCceEEE
Q 003363 201 HGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG--ETYAGKRQPSLFV 277 (826)
Q Consensus 201 ~g~v~~~~~~~~~~wSPD-g~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g--~~~~~~~~~~l~v 277 (826)
.-- ...+.|.|. -...|..+-+.+.+.+.+. ..........+..-++-+.|.+... ...++..+..|.+
T Consensus 140 ~Hy------VMqv~fnPkD~ntFaS~sLDrTVKVWslg--s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKv 211 (794)
T KOG0276|consen 140 EHY------VMQVAFNPKDPNTFASASLDRTVKVWSLG--SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKV 211 (794)
T ss_pred ceE------EEEEEecCCCccceeeeeccccEEEEEcC--CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEE
Confidence 111 278899996 4566666667665543332 2222223334444444444443321 2345556788999
Q ss_pred EEccCCceEeccCCCC-CCccceEEEeeCCC
Q 003363 278 ININSGEVQAVKGIPK-SLSVGQVVWAPLNE 307 (826)
Q Consensus 278 ~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg~ 307 (826)
||-++....+. ..+ ...+..+.|.|.=.
T Consensus 212 WDyQtk~CV~T--LeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 212 WDYQTKSCVQT--LEGHTNNVSFVFFHPELP 240 (794)
T ss_pred eecchHHHHHH--hhcccccceEEEecCCCc
Confidence 99998775443 232 23566777888555
No 492
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=89.64 E-value=10 Score=45.04 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=34.7
Q ss_pred CcceecCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCC
Q 003363 362 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (826)
Q Consensus 362 ~~~~~Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~ 416 (826)
....+|+.+.+.++++.||-||++|+-.|.++ .+.+|++++.+.
T Consensus 166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDR-----------siRlW~i~s~~~ 209 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDR-----------SIRLWPIDSREV 209 (967)
T ss_pred CCcceecccCCceEEEEEccCCcEEEEEecCc-----------ceeeeecccccc
Confidence 33448899999999999999999999988775 366666666554
No 493
>PF03283 PAE: Pectinacetylesterase
Probab=89.64 E-value=0.22 Score=53.66 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHHHHH
Q 003363 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 690 (826)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~a~ 690 (826)
..-+.+++++|.+++.-++++|.|.|.|+||+.++..+-
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 456778999999987778899999999999999876543
No 494
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=89.63 E-value=3.3 Score=43.56 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=40.6
Q ss_pred cceeecCCCCeEEEEeecCCCCCCCccCCCCCCCCCCccCCCCCCcceeecCCCccCCCccCceEEEEEccCCce
Q 003363 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV 285 (826)
Q Consensus 211 ~~~~wSPDg~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~ 285 (826)
..+.||||+++|.+.-.+...+...+. .......-..+|+.++......++ -..+++.++.+|++||+.+|+.
T Consensus 155 ~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 155 LDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred heeeecCCCCEEEEecCCceEEEEecC-cccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCc
Confidence 689999999999887554433221111 111111112234444433333333 1235566889999999998853
No 495
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=89.01 E-value=25 Score=40.26 Aligned_cols=87 Identities=16% Similarity=0.031 Sum_probs=51.1
Q ss_pred ccCCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEccc
Q 003363 265 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 344 (826)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 344 (826)
..+.+..+..+.+||..+|+...+ ..+..... -..+-+... ++-. .+++.|.++++
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~~--l~gh~stv-~~~~~~~~~----~~sg---------------s~D~tVkVW~v-- 318 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTHS--LQGHTSSV-RCLTIDPFL----LVSG---------------SRDNTVKVWDV-- 318 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEEE--ecCCCceE-EEEEccCce----Eeec---------------cCCceEEEEec--
Confidence 445666789999999999987766 33332211 122222222 2221 26678999998
Q ss_pred ccchhhhhhhhcCCCCCCcceecCC-CCccccCceecCCCCEEEEEecc
Q 003363 345 YKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAK 392 (826)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l~f~s~~ 392 (826)
.++...++.. +.+.+...... +..|+..+.+
T Consensus 319 ---------------~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d 350 (537)
T KOG0274|consen 319 ---------------TNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYD 350 (537)
T ss_pred ---------------cCcceEEEeccccccEEEEEec--CCEEEEEecC
Confidence 6666655554 55556655554 5666555544
No 496
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=88.57 E-value=0.86 Score=51.17 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=46.0
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCchhhhhcCC-CCCCcchHHHHHHHHHHHHHcCCCCCCcEEEEEecchHHHHHH
Q 003363 609 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH 687 (826)
Q Consensus 609 ~~~~~~~~la~~G~~Vl~~d~rG~~g~G~~~~~~~~-~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~ 687 (826)
.|...++.|+..||. -.|.+|. .-+|+.+.. .+....-+..+...|+.+.+.. ..++|.|+||||||.+++.
T Consensus 157 vw~kLIe~L~~iGY~--~~nL~gA---PYDWRls~~~le~rd~YF~rLK~lIE~ay~~n--ggkKVVLV~HSMGglv~ly 229 (642)
T PLN02517 157 VWAVLIANLARIGYE--EKNMYMA---AYDWRLSFQNTEVRDQTLSRLKSNIELMVATN--GGKKVVVVPHSMGVLYFLH 229 (642)
T ss_pred eHHHHHHHHHHcCCC--CCceeec---ccccccCccchhhhhHHHHHHHHHHHHHHHHc--CCCeEEEEEeCCchHHHHH
Confidence 457789999999997 4566652 223332211 0000111344555565554431 2478999999999999998
Q ss_pred HHH
Q 003363 688 LIG 690 (826)
Q Consensus 688 ~a~ 690 (826)
++.
T Consensus 230 FL~ 232 (642)
T PLN02517 230 FMK 232 (642)
T ss_pred HHH
Confidence 776
No 497
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=88.55 E-value=41 Score=36.67 Aligned_cols=59 Identities=17% Similarity=0.118 Sum_probs=33.9
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003363 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (826)
Q Consensus 455 g~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~ 523 (826)
+..+|+.+. ...++.+|+.+|+..--... . .......+++.+++... -..++.++..++
T Consensus 241 ~~~vy~~~~---~g~l~a~d~~tG~~~W~~~~-~--~~~~p~~~~~~vyv~~~----~G~l~~~d~~tG 299 (377)
T TIGR03300 241 GGQVYAVSY---QGRVAALDLRSGRVLWKRDA-S--SYQGPAVDDNRLYVTDA----DGVVVALDRRSG 299 (377)
T ss_pred CCEEEEEEc---CCEEEEEECCCCcEEEeecc-C--CccCceEeCCEEEEECC----CCeEEEEECCCC
Confidence 345666532 33689999999986543332 1 11233456777766542 235888886544
No 498
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=88.35 E-value=15 Score=36.19 Aligned_cols=172 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred EEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhhhhhcCCCCCCcceec-CCCCccccCcee
Q 003363 301 VWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRF 379 (826)
Q Consensus 301 ~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~~~~~~~~p~~ 379 (826)
+|||-++ +.|++ |...+|....+ +++....+...+.....- ..+.+.+...+|
T Consensus 17 a~sp~~~-----~l~ag--------------n~~G~iav~sl-------~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f 70 (325)
T KOG0649|consen 17 AISPSKQ-----YLFAG--------------NLFGDIAVLSL-------KSLDSGSAEPPGKLKIVPEQAHDGPIYYLAF 70 (325)
T ss_pred hhCCcce-----EEEEe--------------cCCCeEEEEEe-------hhhhccccCCCCCcceeeccccCCCeeeeee
Q ss_pred cCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeeeccCCCCCcccccCCCCCCccccCCCEEE
Q 003363 380 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (826)
Q Consensus 380 SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (826)
. |.-.|. .+...++-|.|.--....-+....++.+-...+ .-..| .++.+...|....|+
T Consensus 71 ~-d~~Lls-------------~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~-~~evP-----eINam~ldP~enSi~ 130 (325)
T KOG0649|consen 71 H-DDFLLS-------------GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVD-AVEVP-----EINAMWLDPSENSIL 130 (325)
T ss_pred e-hhheee-------------ccCceEEEeeehhhhhhccchhhhhhcCccccC-cccCC-----ccceeEeccCCCcEE
Q ss_pred EEEEeCCeEEEEEEECCCCcEEEecCCCCCeeeEEEeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003363 460 LSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (826)
Q Consensus 460 ~~~~~~~~~~l~~vdl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~~~ 524 (826)
+. +|+..+|.+|+.+|++++...+..++-........+--+++.+...+ +.+-|+.+++
T Consensus 131 ~A---gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt---vRvWd~kt~k 189 (325)
T KOG0649|consen 131 FA---GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGT---VRVWDTKTQK 189 (325)
T ss_pred Ee---cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCcc---EEEEeccccc
No 499
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=88.30 E-value=0.94 Score=47.08 Aligned_cols=144 Identities=21% Similarity=0.206 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHc-CCCCCCcEEEEEecchHHHHHHHHHhCCCceeEEEec-CCccchh-------hhccCCCCCCchh
Q 003363 652 VNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLCNLA-------LMVGTTDIPDWCY 722 (826)
Q Consensus 652 ~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~p~~~~~-------~~~~~~~~~~~~~ 722 (826)
+..+..|++-..++ ..+..+...+.|.|--|+.+...|...|..+ ++|.. .-+.+.. ..++. .|..
T Consensus 214 v~a~srAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDprv~-aIvp~v~D~Lni~a~L~hiyrsYGg----nwpi 288 (507)
T COG4287 214 VYAVSRAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPRVF-AIVPFVYDNLNIEAQLLHIYRSYGG----NWPI 288 (507)
T ss_pred HHHHHHHHHHHHhhhhheeeeeEEEeccccchHHHHHHHhcCcchh-hhhhhHHhhcccHHHHHHHHHhhCC----CCCc
Confidence 44455555544442 2256688999999999999988888777543 33321 1122211 11111 1110
Q ss_pred h-hhccCcCCccCCCCCChhhHHHHhhcCccccc-----CCCCCcEEEEEeCCCCCCCcHHHHHHHHHHHhCCCCEEEEE
Q 003363 723 V-ESYGSKGKDSFTESPSVEDLTRFHSKSPISHI-----SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 796 (826)
Q Consensus 723 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-----~~i~~PvLii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 796 (826)
. ..|..++.......| .......-.+|+.+. .++..|-+|+.+..|+..+++.+.-++..|... .-+.+
T Consensus 289 ~l~pyyaegi~erl~tp--~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG~---kaLrm 363 (507)
T COG4287 289 KLAPYYAEGIDERLETP--LFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDLPGE---KALRM 363 (507)
T ss_pred ccchhHhhhHHHhhcCH--HHHHHHHhhcHHHHhhhhhhhhccccceeecccCCcccCCCccceeeccCCCc---eeeee
Confidence 0 000000110011111 122223335666655 567899999999999999999999999999863 66889
Q ss_pred eCCCCCCCC
Q 003363 797 FPNDVHGIE 805 (826)
Q Consensus 797 ~p~~~H~~~ 805 (826)
+|+..|...
T Consensus 364 vPN~~H~~~ 372 (507)
T COG4287 364 VPNDPHNLI 372 (507)
T ss_pred CCCCcchhh
Confidence 999999875
No 500
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.91 E-value=15 Score=37.51 Aligned_cols=143 Identities=12% Similarity=0.092 Sum_probs=76.1
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCcceeeeeeeeccCCCceEEEEcccccchhhhh
Q 003363 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (826)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~lvf~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (826)
..--+||+++|++..+. +..+......+-.|.-+ ||.++. ++....++|..
T Consensus 294 RTAnlwDVEtge~v~~L-tGHd~ELtHcstHptQr-----LVvTsS--------------rDtTFRLWDFR--------- 344 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNIL-TGHDSELTHCSTHPTQR-----LVVTSS--------------RDTTFRLWDFR--------- 344 (481)
T ss_pred ccceeeeeccCceeccc-cCcchhccccccCCcce-----EEEEec--------------cCceeEeccch---------
Confidence 44567899999987652 33333455666667655 777663 33344555652
Q ss_pred hhhcCCCCCCccee-cCCCCccccCceecCCCCEEEEEeccCCCCCCCCcccceEEEEeCCCCCCCCcccceeeeeeeee
Q 003363 353 ELKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (826)
Q Consensus 353 ~~~~~~~~~~~~~~-Lt~~~~~~~~p~~SpDG~~l~f~s~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 431 (826)
+.-.... ...+...+.+..|.-|.+ ++-.+.+ ..+.+||+..-..- +..|-
T Consensus 345 -------eaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD-----------rTvKvWdLrNMRsp--------lATIR- 396 (481)
T KOG0300|consen 345 -------EAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD-----------RTVKVWDLRNMRSP--------LATIR- 396 (481)
T ss_pred -------hhcceeeeecccccceeEEEEecCCc-eeecCCC-----------ceEEEeeeccccCc--------ceeee-
Confidence 2222223 334456678888887765 4433322 45788887652221 00100
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003363 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (826)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~vdl~tg~~~~lt~ 485 (826)
-++....+..+..+..|.+ ...+.++..+|+.+..+-++..
T Consensus 397 ----------tdS~~NRvavs~g~~iIAi---PhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 397 ----------TDSPANRVAVSKGHPIIAI---PHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred ----------cCCccceeEeecCCceEEe---ccCCceEEEEecCCCccccCCc
Confidence 0112334555544443322 2455566667887777766653
Done!