BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003364
(826 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 124/483 (25%), Positives = 189/483 (39%), Gaps = 100/483 (20%)
Query: 370 EDLAQVEYILTDKTGTLTENRM----------------IFRRCCIGGIFYGNETGDALKD 413
E L I +DKTGTLT N+M + + G Y E G+ LK+
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPE-GEVLKN 398
Query: 414 VGLLNAITSGSPD-VIRFLTVMAVCNTVIPAKSKAGAILYKAQSQDEEALVHAAAQLHMV 472
+ SG D ++ T+ A+CN ++ I K E AL ++++
Sbjct: 399 D---KPVRSGQYDGLVELATICALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVF 455
Query: 473 LVN-KNASILEIKFNGSVLQYEILE---TLEFTSDRKRMSVVVKDCHS----GNISLLSK 524
+N S +E + + ++++ TLEF+ DRK MSV S GN + K
Sbjct: 456 NTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGN-KMFVK 514
Query: 525 GADEAILP---YAHAGQQTRTFVEAVEQ----------YSQLGLRTLCLAWREVEEDEYQ 571
GA E ++ Y G V++ + LR L LA R+ +
Sbjct: 515 GAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREE 574
Query: 572 EWSLMFKEASSTLIDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGIN 631
++D + E E DL +GV + D + V +I+ R AGI
Sbjct: 575 -----------MVLDDSTKFME----YETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIR 619
Query: 632 FWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVCRSLERVLLTMRITTSEPK 691
M+TGD + TAI I + + I G+ ED R+ T E
Sbjct: 620 VIMITGDNKGTAIAIC------------RRIGIFGENEDVADRAY---------TGREFD 658
Query: 692 DVAFVVDGWALEIALKHYRKAFTELAILSRTAIC-CRVTPSQKAQLVELLKSCDYRTLAI 750
D + L R+A R A C RV P+ K+++VE L+S D T
Sbjct: 659 D-----------LPLAEQREA-------CRRACCFARVEPTHKSKIVEYLQSFDEITAMT 700
Query: 751 GDGGNDVRMIQKADIGVGISGREGLQAARAADYSIGKFRFLKRLILV-HGRYSYNRTAFL 809
GDG ND ++KA+IG+ + G A A++ + F + V GR YN
Sbjct: 701 GDGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQF 759
Query: 810 SQY 812
+Y
Sbjct: 760 IRY 762
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 22/124 (17%)
Query: 35 KNLWE----QFSRFMNQYFLLIACLQL---W------SLITPVNPASTWGPLIFIFAVSA 81
K+LWE QF + + LL AC+ W ++ V P ++ I +A
Sbjct: 47 KSLWELVLEQFEDLLVRILLLAACISFVLAWFEEGEETVTAFVEPFV----ILLILIANA 102
Query: 82 TKEAWDDYN--RYLSDKKANEKEVWVVKQGIKKLIQ---SQDIRVGNIVWLRENDEVPCD 136
W + N + K E E+ V + +K +Q ++DI G+IV + D+VP D
Sbjct: 103 IVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPAD 162
Query: 137 LVLI 140
+ ++
Sbjct: 163 IRIL 166
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 126/484 (26%), Positives = 188/484 (38%), Gaps = 101/484 (20%)
Query: 370 EDLAQVEYILTDKTGTLTENRMI----------------FRRCCIGGIFYGNETGDALKD 413
E L I +DKTGTLT N+M I G Y E G+ LK+
Sbjct: 341 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPE-GEVLKN 399
Query: 414 VGLLNAITSGSPD-VIRFLTVMAVCNTVIPAKSKAGAILYKAQSQDEEALVHAAAQLHMV 472
I SG D ++ T+ A+CN ++ + K E AL ++++
Sbjct: 400 D---KPIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVF 456
Query: 473 LVN-KNASILEIKFNGSVLQYEILE---TLEFTSDRKRMSVVVKDCHS-----GNISLLS 523
+N S +E + + ++++ TLEF+ DRK MSV S GN +
Sbjct: 457 NTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGN-KMFV 515
Query: 524 KGADEAILP---YAHAGQQTRTFVEAVEQ----------YSQLGLRTLCLAWREVEEDEY 570
KGA E ++ Y G V++ + LR L LA R+
Sbjct: 516 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 575
Query: 571 QEWSLMFKEASSTLIDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGI 630
+ ++D R E E DL +GV + D + V +I+ R AGI
Sbjct: 576 E-----------MVLDDSSRFME----YETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGI 620
Query: 631 NFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVCRSLERVLLTMRITTSEP 690
M+TGD + TAI I + + I G+ E+ R+ T E
Sbjct: 621 RVIMITGDNKGTAIAIC------------RRIGIFGENEEVADRAY---------TGREF 659
Query: 691 KDVAFVVDGWALEIALKHYRKAFTELAILSRTAIC-CRVTPSQKAQLVELLKSCDYRTLA 749
D + L R+A R A C RV PS K+++VE L+S D T
Sbjct: 660 DD-----------LPLAEQREA-------CRRACCFARVEPSHKSKIVEYLQSYDEITAM 701
Query: 750 IGDGGNDVRMIQKADIGVGISGREGLQAARAADYSIGKFRFLKRLILV-HGRYSYNRTAF 808
GDG ND ++KA+IG+ + G A A++ + F + V GR YN
Sbjct: 702 TGDGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 760
Query: 809 LSQY 812
+Y
Sbjct: 761 FIRY 764
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 24/144 (16%)
Query: 35 KNLWE----QFSRFMNQYFLLIACLQL---W------SLITPVNPASTWGPLIFIFAVSA 81
K+LWE QF + + LL AC+ W ++ V P ++ I +A
Sbjct: 48 KSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFV----ILLILIANA 103
Query: 82 TKEAWDDYN--RYLSDKKANEKEVWVVKQGIKKLIQ---SQDIRVGNIVWLRENDEVPCD 136
W + N + K E E+ V + +K +Q ++DI G+IV + D+VP D
Sbjct: 104 IVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPAD 163
Query: 137 LVLIGTSDPQGVCYVETAALDGET 160
+ ++ S V+ + L GE+
Sbjct: 164 IRIL--SIKSTTLRVDQSILTGES 185
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 126/484 (26%), Positives = 188/484 (38%), Gaps = 101/484 (20%)
Query: 370 EDLAQVEYILTDKTGTLTENRMI----------------FRRCCIGGIFYGNETGDALKD 413
E L I +DKTGTLT N+M I G Y E G+ LK+
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPE-GEVLKN 398
Query: 414 VGLLNAITSGSPD-VIRFLTVMAVCNTVIPAKSKAGAILYKAQSQDEEALVHAAAQLHMV 472
I SG D ++ T+ A+CN ++ + K E AL ++++
Sbjct: 399 D---KPIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVF 455
Query: 473 LVN-KNASILEIKFNGSVLQYEILE---TLEFTSDRKRMSVVVKDCHS-----GNISLLS 523
+N S +E + + ++++ TLEF+ DRK MSV S GN +
Sbjct: 456 NTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGN-KMFV 514
Query: 524 KGADEAILP---YAHAGQQTRTFVEAVEQ----------YSQLGLRTLCLAWREVEEDEY 570
KGA E ++ Y G V++ + LR L LA R+
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 571 QEWSLMFKEASSTLIDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGI 630
+ ++D R E E DL +GV + D + V +I+ R AGI
Sbjct: 575 E-----------MVLDDSSRFME----YETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGI 619
Query: 631 NFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVCRSLERVLLTMRITTSEP 690
M+TGD + TAI I + + I G+ E+ R+ T E
Sbjct: 620 RVIMITGDNKGTAIAIC------------RRIGIFGENEEVADRAY---------TGREF 658
Query: 691 KDVAFVVDGWALEIALKHYRKAFTELAILSRTAIC-CRVTPSQKAQLVELLKSCDYRTLA 749
D + L R+A R A C RV PS K+++VE L+S D T
Sbjct: 659 DD-----------LPLAEQREA-------CRRACCFARVEPSHKSKIVEYLQSYDEITAM 700
Query: 750 IGDGGNDVRMIQKADIGVGISGREGLQAARAADYSIGKFRFLKRLILV-HGRYSYNRTAF 808
GDG ND ++KA+IG+ + G A A++ + F + V GR YN
Sbjct: 701 TGDGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 759
Query: 809 LSQY 812
+Y
Sbjct: 760 FIRY 763
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 24/144 (16%)
Query: 35 KNLWE----QFSRFMNQYFLLIACLQL---W------SLITPVNPASTWGPLIFIFAVSA 81
K+LWE QF + + LL AC+ W ++ V P ++ I +A
Sbjct: 47 KSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFV----ILLILIANA 102
Query: 82 TKEAWDDYN--RYLSDKKANEKEVWVVKQGIKKLIQ---SQDIRVGNIVWLRENDEVPCD 136
W + N + K E E+ V + +K +Q ++DI G+IV + D+VP D
Sbjct: 103 IVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPAD 162
Query: 137 LVLIGTSDPQGVCYVETAALDGET 160
+ ++ S V+ + L GE+
Sbjct: 163 IRIL--SIKSTTLRVDQSILTGES 184
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 125/484 (25%), Positives = 187/484 (38%), Gaps = 101/484 (20%)
Query: 370 EDLAQVEYILTDKTGTLTENRMI----------------FRRCCIGGIFYGNETGDALKD 413
E L I + KTGTLT N+M I G Y E G+ LK+
Sbjct: 340 ETLGCTSVICSXKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPE-GEVLKN 398
Query: 414 VGLLNAITSGSPD-VIRFLTVMAVCNTVIPAKSKAGAILYKAQSQDEEALVHAAAQLHMV 472
I SG D ++ T+ A+CN ++ + K E AL ++++
Sbjct: 399 D---KPIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVF 455
Query: 473 LVN-KNASILEIKFNGSVLQYEILE---TLEFTSDRKRMSVVVKDCHS-----GNISLLS 523
+N S +E + + ++++ TLEF+ DRK MSV S GN +
Sbjct: 456 NTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGN-KMFV 514
Query: 524 KGADEAILP---YAHAGQQTRTFVEAVEQ----------YSQLGLRTLCLAWREVEEDEY 570
KGA E ++ Y G V++ + LR L LA R+
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 571 QEWSLMFKEASSTLIDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGI 630
+ ++D R E E DL +GV + D + V +I+ R AGI
Sbjct: 575 E-----------MVLDDSSRFME----YETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGI 619
Query: 631 NFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVCRSLERVLLTMRITTSEP 690
M+TGD + TAI I + + I G+ E+ R+ T E
Sbjct: 620 RVIMITGDNKGTAIAIC------------RRIGIFGENEEVADRAY---------TGREF 658
Query: 691 KDVAFVVDGWALEIALKHYRKAFTELAILSRTAIC-CRVTPSQKAQLVELLKSCDYRTLA 749
D + L R+A R A C RV PS K+++VE L+S D T
Sbjct: 659 DD-----------LPLAEQREA-------CRRACCFARVEPSHKSKIVEYLQSYDEITAM 700
Query: 750 IGDGGNDVRMIQKADIGVGISGREGLQAARAADYSIGKFRFLKRLILV-HGRYSYNRTAF 808
GDG ND ++KA+IG+ + G A A++ + F + V GR YN
Sbjct: 701 TGDGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 759
Query: 809 LSQY 812
+Y
Sbjct: 760 FIRY 763
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 24/144 (16%)
Query: 35 KNLWE----QFSRFMNQYFLLIACLQL---W------SLITPVNPASTWGPLIFIFAVSA 81
K+LWE QF + + LL AC+ W ++ V P ++ I +A
Sbjct: 47 KSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFV----ILLILIANA 102
Query: 82 TKEAWDDYN--RYLSDKKANEKEVWVVKQGIKKLIQ---SQDIRVGNIVWLRENDEVPCD 136
W + N + K E E+ V + +K +Q ++DI G+IV + D+VP D
Sbjct: 103 IVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPAD 162
Query: 137 LVLIGTSDPQGVCYVETAALDGET 160
+ ++ S V+ + L GE+
Sbjct: 163 IRIL--SIKSTTLRVDQSILTGES 184
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 171/432 (39%), Gaps = 58/432 (13%)
Query: 365 NTAISEDLAQVEYILTDKTGTLTENRMIFRRCCIGGIFYGNETGDALKDVGLLNAITSGS 424
N E L I +DKTGTLT+NRM + +++ N+ +A A +
Sbjct: 365 NLEAVETLGSTSTICSDKTGTLTQNRM-----TVAHMWFDNQIHEADTTENQSGAAFDKT 419
Query: 425 PDVIRFLT-VMAVCN-TVIPAKSKAGAILYKAQSQD--EEAL---VHAAAQLHMVLVNKN 477
L+ + A+CN V A IL ++ + D E AL + + ++N
Sbjct: 420 SATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRN 479
Query: 478 ASILEIKFNGSVLQYEILETLEFTSDRKRMSVVVKDCHSGNI----SLLSKGADEAILPY 533
I+EI FN S +Y++ S R +V+K + ++L GA+E +
Sbjct: 480 PKIVEIPFN-STNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPL--- 535
Query: 534 AHAGQQTRTFVEAVEQYSQLGLRTLCLAWREVEEDEYQEWSLMFKEASSTLIDREWRIAE 593
F A + LG R L + ED+Y E F A+
Sbjct: 536 --KEDMKEAFQNAYLELGGLGERVLGFCHFALPEDKYNE-GYPFD-------------AD 579
Query: 594 VCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFI 653
DL +G+ A+ D + VP+ + R AGI M+TGD TA IA I
Sbjct: 580 EPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 639
Query: 654 SPEPKGQLLSIDGKTEDEVCRSLERVLLTMRITTSEPKDV-AFVVDGWALEIALKHYRKA 712
S + ED R L + I P+D A VV G L+ +
Sbjct: 640 SEG--------NETIEDIAAR------LNIPIGQVNPRDAKACVVHGSDLK---DLSTEV 682
Query: 713 FTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGV--GIS 770
++ + R +P QK +VE + GDG ND ++KADIGV GIS
Sbjct: 683 LDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIS 742
Query: 771 GREGLQAARAAD 782
G + + +AAD
Sbjct: 743 GSD--VSKQAAD 752
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 165/725 (22%), Positives = 272/725 (37%), Gaps = 173/725 (23%)
Query: 94 SDKKANEKEVWVVKQGIKKLIQSQDIRVGNIVWLRENDEVPCDLVLIGTSDPQGVCYVET 153
S K ++ V++ G K I ++++ VG++V ++ D +P DL +I + C V+
Sbjct: 135 SFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANG----CKVDN 190
Query: 154 AALDGETDLKTRLIPAACMGMDFELLHKIKGVIECPGPDKDIRRFDGNLRLLPPFIDNDV 213
++L GE++ +TR DF E P ++I F N
Sbjct: 191 SSLTGESEPQTR-------SPDF--------TNENPLETRNIAFFSTN------------ 223
Query: 214 CPLTIKNTILQSCYLRNTEWACGVAVYTGNETKLGMT-------RGIPEPKLTAVDAMID 266
++ T A G+ VYTG+ T +G G P ++ I
Sbjct: 224 ---CVEGT------------ARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIH 268
Query: 267 KLTGAXXXXXXXXXXXLGTAGNVWKDTEARKQWYVL-YPQEFPWYELLVIPLRFELLCSI 325
+TG LG + +++L E+ W E ++ L I
Sbjct: 269 IITGVAVF--------LGVS------------FFILSLILEYTWLEAVI------FLIGI 302
Query: 326 MI---PISIKVSLDLVKSLYAKFIDWDYEMIDPETDTPSHATNTAISEDLAQVEYILTDK 382
++ P + ++ + +L AK + ++ N E L I +DK
Sbjct: 303 IVANVPEGLLATVTVCLTLTAKRMARKNCLVK----------NLEAVETLGSTSTICSDK 352
Query: 383 TGTLTENRMIFRRCCIGGIFYGNETGDALKDVGLLNAITSGSPDVIRFLTVMAVCN-TVI 441
TGTLT+NRM + +T + V + S + + +CN V
Sbjct: 353 TGTLTQNRMTVAHMWSDNQIHEADTTENQSGV----SFDKTSATWLALSRIAGLCNRAVF 408
Query: 442 PAKSKAGAILYKAQSQD--EEAL---VHAAAQLHMVLVNKNASILEIKFNGSVLQYEI-L 495
A + IL +A + D E AL + + + I+EI FN S +Y++ +
Sbjct: 409 QANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPFN-STNKYQLSI 467
Query: 496 ETLEFTSDRKRMSVVVKDCHSGNISLLSKGADEAILPYA-----HAGQQT------RTFV 544
T++ + + L+ KGA E IL H +Q F
Sbjct: 468 HKNPNTAEPRHL-------------LVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQ 514
Query: 545 EAVEQYSQLGLRTLCLAWREVEEDEYQEWSLMFKEASSTLIDREWRIAEVCQRLEHDLKV 604
A + LG R L + ++++ E F D + + +C
Sbjct: 515 NAYLELGGLGERVLGFCHLFLPDEQFPE-GFQFDTD-----DVNFPLDNLC--------F 560
Query: 605 LGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSI 664
+G+ ++ D + VP+ + R AGI M+TGD TA IA IS
Sbjct: 561 VGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEG-------- 612
Query: 665 DGKTEDEVCRSLERVLLTMRITTSEPKDV-AFVVDGWALEI----ALKHYRKAFTELAIL 719
+ ED R L + ++ P+D A VV G L+ L K TE+
Sbjct: 613 NETVEDIAAR------LNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEI--- 663
Query: 720 SRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGV--GISGREGLQA 777
+ R +P QK +VE + GDG ND +KADIGV GI+G + +
Sbjct: 664 ----VFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSD--VS 717
Query: 778 ARAAD 782
+AAD
Sbjct: 718 KQAAD 722
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 164/725 (22%), Positives = 271/725 (37%), Gaps = 173/725 (23%)
Query: 94 SDKKANEKEVWVVKQGIKKLIQSQDIRVGNIVWLRENDEVPCDLVLIGTSDPQGVCYVET 153
S K ++ V++ G K I ++++ VG++V ++ D +P DL +I + C V+
Sbjct: 129 SFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANG----CKVDN 184
Query: 154 AALDGETDLKTRLIPAACMGMDFELLHKIKGVIECPGPDKDIRRFDGNLRLLPPFIDNDV 213
++L GE++ +TR DF E P ++I F N
Sbjct: 185 SSLTGESEPQTR-------SPDF--------TNENPLETRNIAFFSTN------------ 217
Query: 214 CPLTIKNTILQSCYLRNTEWACGVAVYTGNETKLGMT-------RGIPEPKLTAVDAMID 266
++ T A G+ VYTG+ T +G G P ++ I
Sbjct: 218 ---CVEGT------------ARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIH 262
Query: 267 KLTGAXXXXXXXXXXXLGTAGNVWKDTEARKQWYVL-YPQEFPWYELLVIPLRFELLCSI 325
+TG LG + +++L E+ W E ++ L I
Sbjct: 263 IITGVAVF--------LGVS------------FFILSLILEYTWLEAVI------FLIGI 296
Query: 326 MI---PISIKVSLDLVKSLYAKFIDWDYEMIDPETDTPSHATNTAISEDLAQVEYILTDK 382
++ P + ++ + +L AK + ++ N E L I + K
Sbjct: 297 IVANVPEGLLATVTVCLTLTAKRMARKNCLVK----------NLEAVETLGSTSTICSXK 346
Query: 383 TGTLTENRMIFRRCCIGGIFYGNETGDALKDVGLLNAITSGSPDVIRFLTVMAVCN-TVI 441
TGTLT+NRM + +T + V + S + + +CN V
Sbjct: 347 TGTLTQNRMTVAHMWSDNQIHEADTTENQSGV----SFDKTSATWLALSRIAGLCNRAVF 402
Query: 442 PAKSKAGAILYKAQSQD--EEAL---VHAAAQLHMVLVNKNASILEIKFNGSVLQYEI-L 495
A + IL +A + D E AL + + + I+EI FN S +Y++ +
Sbjct: 403 QANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPFN-STNKYQLSI 461
Query: 496 ETLEFTSDRKRMSVVVKDCHSGNISLLSKGADEAILPYA-----HAGQQT------RTFV 544
T++ + + L+ KGA E IL H +Q F
Sbjct: 462 HKNPNTAEPRHL-------------LVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQ 508
Query: 545 EAVEQYSQLGLRTLCLAWREVEEDEYQEWSLMFKEASSTLIDREWRIAEVCQRLEHDLKV 604
A + LG R L + ++++ E F D + + +C
Sbjct: 509 NAYLELGGLGERVLGFCHLFLPDEQFPE-GFQFDTD-----DVNFPLDNLC--------F 554
Query: 605 LGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSI 664
+G+ ++ D + VP+ + R AGI M+TGD TA IA IS
Sbjct: 555 VGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEG-------- 606
Query: 665 DGKTEDEVCRSLERVLLTMRITTSEPKDV-AFVVDGWALEIA----LKHYRKAFTELAIL 719
+ ED R L + ++ P+D A VV G L+ L K TE+
Sbjct: 607 NETVEDIAAR------LNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEI--- 657
Query: 720 SRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGV--GISGREGLQA 777
+ R +P QK +VE + GDG ND +KADIGV GI+G + +
Sbjct: 658 ----VFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSD--VS 711
Query: 778 ARAAD 782
+AAD
Sbjct: 712 KQAAD 716
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 112/443 (25%), Positives = 162/443 (36%), Gaps = 80/443 (18%)
Query: 365 NTAISEDLAQVEYILTDKTGTLTENRMIFRRCCIGGIFYGNETGDALKDVGLLNAITSGS 424
N E L I +DKTGTLT+NRM + +++ N A S
Sbjct: 370 NLEAVETLGSTSVICSDKTGTLTQNRMT-----VSHLWFDNHIHSADTTEDQSGQTFDQS 424
Query: 425 PDVIRFLT-VMAVCNTV----------IPAKSKAGAILYKAQSQDEEALVHAAAQLHMVL 473
+ R L V+ +CN +P + G A + E + A M
Sbjct: 425 SETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNA----MGY 480
Query: 474 VNKNASILEIKFNGSVLQYEILETLEFTSDRKRMSV-------VVKDCHSGNISLLSKGA 526
+ + EI FN + + TLE D + + V V++ C S +L KG
Sbjct: 481 RERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSS----ILIKGQ 536
Query: 527 DEAILPYAHAGQQTRTFVEAVEQYSQLGLRTLCLAWREVEEDEYQEWSLMFKEASSTLID 586
+ LP Q F A LG R L + E +Y EA +
Sbjct: 537 E---LPLDE--QWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTS 591
Query: 587 REWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQI 646
L G+ ++ D + VP+ + R AGI M+TGD TA I
Sbjct: 592 --------------GLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAI 637
Query: 647 ALSCNFISPEPKGQLLSIDGKTE---DEVCRSLER--VLLTMRITTSEPKDVAFVVDGWA 701
A S IS E + I + D+V R R V+ M++ +P ++
Sbjct: 638 AASVGIIS-EGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSEL-------- 688
Query: 702 LEIALKHYRKAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQ 761
+E H F R +P QK +VE + GDG ND ++
Sbjct: 689 VEALRTHPEMVFA------------RTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALK 736
Query: 762 KADIGV--GISGREGLQAARAAD 782
KADIGV GI+G + A AAD
Sbjct: 737 KADIGVAMGIAGSDA--AKNAAD 757
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 84 EAWDDYNRYLSDKKANEKEVWVVKQGIKKLIQSQDIRVGNIVWLRENDEVPCDLVLIGTS 143
+ + N S K ++ V++ G K I + + VG++V ++ D VP D+ ++
Sbjct: 160 QEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQ 219
Query: 144 DPQGVCYVETAALDGETDLKTR 165
+ V+ ++L GE++ +TR
Sbjct: 220 GRK----VDNSSLTGESEPQTR 237
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 101/423 (23%), Positives = 160/423 (37%), Gaps = 129/423 (30%)
Query: 366 TAISEDLAQVEYILTDKTGTLTENRMIFRRCCIGGIFYGNETGDALKDVGLLNAITSGSP 425
TAI E++A ++ + +DKTGTLT N++ + + G E KD LL A
Sbjct: 315 TAI-EEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVE-----KDQVLLFA------ 362
Query: 426 DVIRFLTVMAVCNTVIPAKSKAGAILYKAQSQDEEALVHAAAQLHMVLVNKNA--SILEI 483
A+ + ++QD AA + M+ K A I E+
Sbjct: 363 -----------------------AMASRVENQD----AIDAAMVGMLADPKEARAGIREV 395
Query: 484 KFNGSVLQYEILETLEFTSDRKRMSVVVKDCHSGNISLLSKGADEAILPYAHAGQQ-TRT 542
F L F KR ++ D SGN +SKGA E IL A A ++
Sbjct: 396 HF------------LPFNPVDKRTALTYIDG-SGNWHRVSKGAPEQILELAKASNDLSKK 442
Query: 543 FVEAVEQYSQLGLRTLCLAWREVEEDEYQEWSLMFKEASSTLIDREWRIAEVCQRLEHDL 602
+ +++Y++ GLR+L +A + V E KE+ W
Sbjct: 443 VLSIIDKYAERGLRSLAVARQVVPEKT--------KESPGA----PW------------- 477
Query: 603 KVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDK----QNTAIQIALSCNFISPEPK 658
+ +G+ + D + ETI G+N M+TGD+ + T ++ + N P
Sbjct: 478 EFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMY---PS 534
Query: 659 GQLLSIDGKTEDEVCRSLERVLLTMRITTSEPKDVAFVVDGWALEIALKHYRKAFTELAI 718
LL G +D S+ L + DG+A
Sbjct: 535 SALL---GTHKDANLASIPVEELIEK------------ADGFA----------------- 562
Query: 719 LSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGISGREGLQAA 778
V P K ++V+ L+ + GDG ND ++KADIG+ ++ + AA
Sbjct: 563 --------GVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVA--DATDAA 612
Query: 779 RAA 781
R A
Sbjct: 613 RGA 615
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 100/275 (36%), Gaps = 64/275 (23%)
Query: 520 SLLSKGADEAILPYAHAGQQTRTFVEAVEQYSQLGLRTLCL------AWREVEEDEY--Q 571
S+LSK P+ ++ VE S G R C+ + VEED +
Sbjct: 438 SVLSKYKVLQFHPFDPVSKKVVAVVE-----SPQGERITCVKGAPLFVLKTVEEDHPIPE 492
Query: 572 EWSLMFKEASSTLIDREWRIAEVC-QRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGI 630
E +K + R +R V +R E ++LG+ D + +T+ + G+
Sbjct: 493 EVDQAYKNKVAEFATRGFRSLGVARKRGEGSWEILGIMPCMDPPRHDTYKTVCEAKTLGL 552
Query: 631 NFWMLTGDK----QNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVCRSLERVLLTMRIT 686
+ MLTGD + T+ Q+ L N + E G D +
Sbjct: 553 SIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGD-------------------MP 593
Query: 687 TSEPKDVAFVVDGWALEIALKHYRKAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYR 746
SE D DG+A V P K +VE+L+ Y
Sbjct: 594 GSEVYDFVEAADGFA-------------------------EVFPQHKYNVVEILQQRGYL 628
Query: 747 TLAIGDGGNDVRMIQKADIGVGISGREGLQAARAA 781
GDG ND ++KAD G+ + G AAR+A
Sbjct: 629 VAMTGDGVNDAPSLKKADTGIAVEGSS--DAARSA 661
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 370 EDLAQVEYILTDKTGTLTENRM 391
E LA VE + +DKTGTLT+N++
Sbjct: 367 ESLAGVEILCSDKTGTLTKNKL 388
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 601 DLKVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNF------IS 654
D K + + +ED ++ PETI L+++GI MLTGD + TA +A + I
Sbjct: 542 DGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIM 601
Query: 655 PEPKGQLLS 663
PE K +++S
Sbjct: 602 PEDKSRIVS 610
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 710 RKAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGI 769
R A L + + P K+++V LK GDG ND + KADIG+ +
Sbjct: 582 RTAEAVAGTLGIKKVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAM 641
Query: 770 S 770
Sbjct: 642 G 642
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 585 IDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAI 644
++RE + A + R + +V G+ A+ D L++ ++ L++ GI M+TGD +A
Sbjct: 432 LEREAKTAVIVAR---NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAE 488
Query: 645 QIALSCNF 652
I+ N
Sbjct: 489 AISRELNL 496
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 101 KEVWVVKQGIKKLIQSQDIRVGNIVWLRENDEVPCDLVLIGTSDPQGVCYVETAALDGE 159
K V++ G + + +++ VG+IV +R +++P D V++ +G YV+ + + GE
Sbjct: 133 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVV-----EGESYVDESMISGE 186
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 724 ICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGIS 770
+ V P QK++ V+ L++ + +GDG ND + +AD+G+ +
Sbjct: 499 VIAEVLPHQKSEEVKKLQAKEVVAF-VGDGINDAPALAQADLGIAVG 544
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 36.6 bits (83), Expect = 0.056, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 747 TLAIGDGGNDVRMIQKADIGVGI-SGREGLQAARAADY 783
T++ GDGGND+ M++ A IGV + +E ++A AADY
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAMGQAKEDVKA--AADY 241
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 36.6 bits (83), Expect = 0.056, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 747 TLAIGDGGNDVRMIQKADIGVGI-SGREGLQAARAADY 783
T++ GDGGND+ M++ A IGV + +E ++A AADY
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAMGQAKEDVKA--AADY 241
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 585 IDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAI 644
++RE + A + R + +V G+ A+ D L++ ++ L++ GI M+TGD +A
Sbjct: 510 LEREAKTAVIVAR---NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAE 566
Query: 645 QIALSCNF 652
I+ N
Sbjct: 567 AISRELNL 574
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 101 KEVWVVKQGIKKLIQSQDIRVGNIVWLRENDEVPCDLVLIGTSDPQGVCYVETAALDGE 159
K V++ G + + +++ VG+IV +R +++P D V++ +G YV+ + + GE
Sbjct: 211 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVV-----EGESYVDESMISGE 264
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 724 ICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGIS 770
+ V P QK++ V+ L++ + +GDG ND + +AD+G+ +
Sbjct: 577 VIAEVLPHQKSEEVKKLQAKEVVAF-VGDGINDAPALAQADLGIAVG 622
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 585 IDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAI 644
++RE + A + R + +V G+ A+ D L++ ++ L++ GI M+TGD +A
Sbjct: 138 LEREAKTAVIVAR---NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAE 194
Query: 645 QIALSCNF 652
I+ N
Sbjct: 195 AISRELNL 202
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 724 ICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGIS 770
+ V P QK++ V+ L++ + +GDG ND + +AD+G+ +
Sbjct: 205 VIAEVLPHQKSEEVKKLQAKEVVAF-VGDGINDAPALAQADLGIAVG 250
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 585 IDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAI 644
++RE + A + R + +V G+ A+ D L++ ++ L++ GI M+TGD +A
Sbjct: 138 LEREAKTAVIVAR---NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAE 194
Query: 645 QIALSCNF 652
I+ N
Sbjct: 195 AISRELNL 202
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 724 ICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGIS 770
+ V P QK++ V+ L++ + +GDG ND + +AD+G+ +
Sbjct: 205 VIAEVLPHQKSEEVKKLQAKEVVAF-VGDGINDAPALAQADLGIAVG 250
>pdb|1S0I|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Sialyl-
Lactose (Michaelis Complex)
pdb|1S0J|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Munana
(Michaelis Complex)
Length = 648
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 30/108 (27%)
Query: 16 LYCANRL-SNRKYTLMNFLPKNLWEQFSRFMNQYFLLIACLQLW--------SLITPVNP 66
LYC + + SN Y+L+ F+R + + ++ + LQ W S+ TP +P
Sbjct: 366 LYCLHEINSNEVYSLV----------FARLVGELRIIKSVLQSWKNWDSHLSSICTPADP 415
Query: 67 ASTW-----GP------LIFIFAVSATKEAWDDYNRYLSDKKANEKEV 103
A++ GP L+ + SATK W+D R ++ AN + V
Sbjct: 416 AASSSERGCGPAVTTVGLVGFLSHSATKTEWEDAYRCVNASTANAERV 463
>pdb|3PJQ|A Chain A, Trypanosoma Cruzi Trans-Sialidase-Like Inactive Isoform
(Including The Natural Mutation Tyr342his) In Complex
With Lactose
Length = 648
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 30/108 (27%)
Query: 16 LYCANRL-SNRKYTLMNFLPKNLWEQFSRFMNQYFLLIACLQLW--------SLITPVNP 66
LYC + + SN Y+L+ F+R + + ++ + LQ W S+ TP +P
Sbjct: 366 LYCLHEINSNEVYSLV----------FARLVGELRIIKSVLQSWKNWDSHLSSICTPADP 415
Query: 67 ASTW-----GP------LIFIFAVSATKEAWDDYNRYLSDKKANEKEV 103
A++ GP L+ + SATK W+D R ++ AN + V
Sbjct: 416 AASSSERGCGPAVTTVGLVGFLSHSATKTEWEDAYRCVNASTANAERV 463
>pdb|1MR5|A Chain A, Orthorhombic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS0|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS0|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS1|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS1|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS3|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS3|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS8|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS8|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS9|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|1MS9|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|2AH2|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With
2,3-Difluorosialic Acid (Covalent Intermediate)
pdb|3B69|A Chain A, T Cruzi Trans-Sialidase Complex With Benzoylated Nana
Derivative
pdb|3OPZ|A Chain A, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|B Chain B, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|C Chain C, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
Length = 648
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 30/108 (27%)
Query: 16 LYCANRL-SNRKYTLMNFLPKNLWEQFSRFMNQYFLLIACLQLW--------SLITPVNP 66
LYC + + SN Y+L+ F+R + + ++ + LQ W S+ TP +P
Sbjct: 366 LYCLHEINSNEVYSLV----------FARLVGELRIIKSVLQSWKNWDSHLSSICTPADP 415
Query: 67 ASTW-----GP------LIFIFAVSATKEAWDDYNRYLSDKKANEKEV 103
A++ GP L+ + SATK W+D R ++ AN + V
Sbjct: 416 AASSSERGCGPAVTTVGLVGFLSHSATKTEWEDAYRCVNASTANAERV 463
>pdb|1MS5|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
pdb|1MS5|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
Length = 648
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 30/108 (27%)
Query: 16 LYCANRL-SNRKYTLMNFLPKNLWEQFSRFMNQYFLLIACLQLW--------SLITPVNP 66
LYC + + SN Y+L+ F+R + + ++ + LQ W S+ TP +P
Sbjct: 366 LYCLHEINSNEVYSLV----------FARLVGELRIIKSVLQSWKNWDSHLSSICTPADP 415
Query: 67 ASTW-----GP------LIFIFAVSATKEAWDDYNRYLSDKKANEKEV 103
A++ GP L+ + SATK W+D R ++ AN + V
Sbjct: 416 AASSSERGCGPAVTTVGLVGFLSHSATKTEWEDAYRCVNASTANAERV 463
>pdb|3M1Y|A Chain A, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|B Chain B, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|C Chain C, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|D Chain D, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
Length = 217
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 667 KTEDEVCRSLERVLLTMRITTS-EPKDVAFVVDGWALEIALKHYRK------AFTELAIL 719
K EVC SL + + ++ + K+ V ++A HYR AF+ I+
Sbjct: 65 KLAKEVCESLPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLIV 124
Query: 720 SRTAICCRVT-----PSQKAQ----LVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGIS 770
A+ VT K + L LL TL +GDG ND+ + A I + +
Sbjct: 125 ENDALNGLVTGHXXFSHSKGEXLLVLQRLLNISKTNTLVVGDGANDLSXFKHAHIKIAFN 184
Query: 771 GREGLQ 776
+E L+
Sbjct: 185 AKEVLK 190
>pdb|3GYG|A Chain A, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
pdb|3GYG|B Chain B, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
pdb|3GYG|C Chain C, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
pdb|3GYG|D Chain D, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
Length = 289
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 746 RTLAIGDGGNDVRMIQKADIGVGISGREGLQAARA-------ADYSIGKFRFLKRLI 795
R +A GD GNDVR +Q +G G + Q A+ ++YS G LK+LI
Sbjct: 229 RAIAFGDSGNDVRXLQT--VGNGYLLKNATQEAKNLHNLITDSEYSKGITNTLKKLI 283
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 726 CRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGIS 770
V P +KA+ V+ ++ Y T +GDG ND + +AD+G+ I
Sbjct: 188 AEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQADVGIAIG 231
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 603 KVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTA 643
+V GV A+ DR++ E I L+ GI MLTGD + A
Sbjct: 134 EVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVA 174
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 101 KEVWVVKQGIKKLIQSQDIRVGNIVWLRENDEVPCDLVLIGTSDPQGVCYVETAALDGE 159
K V++ G + + +++ VG+IV +R +++P D V++ +G YV+ + + GE
Sbjct: 12 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVV-----EGESYVDESMISGE 65
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 726 CRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGIS 770
V P +KA+ V+ ++ Y T +GDG ND + +AD+G+ I
Sbjct: 188 AEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQADVGIAIG 231
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 603 KVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTA 643
+V GV A+ DR++ E I L+ GI MLTGD + A
Sbjct: 134 EVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVA 174
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 736 LVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGISGREGLQAARAADY 783
L+E + +AIGDG ND+ MI+ A +GV + G +AADY
Sbjct: 205 LLENIGMTREEVIAIGDGYNDLSMIKFAGMGVAM-GNAQEPVKKAADY 251
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 748 LAIGDGGNDVRMIQKADIGVGISGREGLQAARAADY 783
+A GDGGND+ M++ A IGV + G + AD+
Sbjct: 214 MACGDGGNDIPMLKAAGIGVAM-GNASEKVQSVADF 248
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 748 LAIGDGGNDVRMIQKADIGVGISGRE 773
LA+GDG D +M ++AD+G+ + GRE
Sbjct: 154 LAMGDGYADAKMFERADMGIAV-GRE 178
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 745 YRTLAIGDGGNDVRMIQKADIGVGISGREGLQA 777
+ T+A+GDG ND+ M+ A +GV + ++A
Sbjct: 262 HNTVAVGDGANDLVMMAAAGLGVAYHAKPKVEA 294
>pdb|1RKU|A Chain A, Crystal Structure Of Thrh Gene Product Of Pseudomonas
Aeruginosa
pdb|1RKU|B Chain B, Crystal Structure Of Thrh Gene Product Of Pseudomonas
Aeruginosa
pdb|1RKV|A Chain A, Structure Of Phosphate Complex Of Thrh From Pseudomonas
Aeruginosa
pdb|1RKV|B Chain B, Structure Of Phosphate Complex Of Thrh From Pseudomonas
Aeruginosa
Length = 206
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 733 KAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGISG-----REGLQAARAADYSIGK 787
K Q V KS YR +A GD ND M+ +A G+ RE Q Y K
Sbjct: 134 KRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILFHAPENVIREFPQFPAVHTYEDLK 193
Query: 788 FRFLK 792
FLK
Sbjct: 194 REFLK 198
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 746 RTLAIGDGGNDVRMIQKADIGVGISGREGLQAARAADYSI 785
+T+A+GDG ND+ M+ A +G+ + + L+ AD S+
Sbjct: 341 QTVAVGDGANDIDMLAAAGLGIAFNAKPALR--EVADASL 378
>pdb|2ZKR|YY Chain y, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 135
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 428 IRFLTVMAVCNTVIPAKSKAGAILYKAQSQDEEALVHAAAQLHMVLVNKNASI 480
++ L V+ +CN KS I + S++ +A+V AAQL + + N NA +
Sbjct: 82 VKELEVLLMCN-----KSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARL 129
>pdb|1CG5|B Chain B, Deoxy Form Hemoglobin From Dasyatis Akajei
pdb|1CG8|B Chain B, Co Form Hemoglobin From Dasyatis Akajei
Length = 141
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 605 LGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAI 644
+GV D++Q + E I+ L+K INF L+G Q +
Sbjct: 54 IGVQQHADKVQRALGEAIDDLKKVEINFQNLSGKHQEIGV 93
>pdb|3LBY|A Chain A, Crystal Structure Of Smu.1697c, A Putative
Methyltransferase From Streptococcus Mutans In Complex
With Sah
pdb|3LBY|B Chain B, Crystal Structure Of Smu.1697c, A Putative
Methyltransferase From Streptococcus Mutans In Complex
With Sah
Length = 181
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 378 ILTDKTGTLTENRMIFRRCCIGG-----IFYGNETGDALKDVGL 416
++T TLT + I R IGG ++YG+E GD KD L
Sbjct: 104 VITQPATTLTAIKKILERLEIGGRLAIMVYYGHEGGDKEKDAVL 147
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 747 TLAIGDGGNDVRMIQKADIGVGISGREGLQAARAADYSIGK 787
T+A+GDG ND+ M +KA + + + L+ AD I K
Sbjct: 162 TVAVGDGANDISMFKKAGLKIAFCAKPILK--EKADICIEK 200
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 747 TLAIGDGGNDVRMIQKADIGVGISGREGLQAARAADYSIGK 787
T+A+GDG ND+ M +KA + + + L+ AD I K
Sbjct: 162 TVAVGDGANDISMFKKAGLKIAFCAKPILK--EKADICIEK 200
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 590 RIAEVCQRL-EHDL-KVLGVTAIEDRLQDGVPETIETLRKAGI-NFWMLTGDKQ------ 640
R+A + +R EH + + + A+E ++ G PE +E + G+ +L G+K+
Sbjct: 45 RLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVADGILVGNKRLXEDFG 104
Query: 641 -NTAIQIALSCNFISPEPK-GQLLSIDGKTEDEVCRSLERVLLTMRITTSEPKDVAFVVD 698
+ ++ L+ + E K +++ +G+ E + S + + + + E K V
Sbjct: 105 VAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVS-DTLKESAKPAVQELKRXGIKVG 163
Query: 699 GWALEIALKHYRKAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVR 758
I ++R A L+ + V P QK++ V+ L++ + +GDG ND
Sbjct: 164 ----XITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAKEVVAF-VGDGINDAP 218
Query: 759 MIQKADIGVGI 769
+ +AD+G+ +
Sbjct: 219 ALAQADLGIAV 229
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 724 ICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGI 769
+ V P QK++ V+ L++ + +GDG ND + +AD+G+ +
Sbjct: 64 VIAEVLPHQKSEEVKKLQAKEVVAF-VGDGINDAPALAQADLGIAV 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,675,540
Number of Sequences: 62578
Number of extensions: 970815
Number of successful extensions: 2188
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2098
Number of HSP's gapped (non-prelim): 96
length of query: 826
length of database: 14,973,337
effective HSP length: 107
effective length of query: 719
effective length of database: 8,277,491
effective search space: 5951516029
effective search space used: 5951516029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)