BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003365
(826 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10XA1|OBG_TRIEI GTPase obg OS=Trichodesmium erythraeum (strain IMS101) GN=obg PE=3
SV=1
Length = 352
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 71/171 (41%), Gaps = 17/171 (9%)
Query: 10 DGSIHLNVLELRTLSET-------AGSSTTVFEPQSSNGKGDSSSASSVSPMTPVVRAPE 62
DG + + LEL+ L+E AG ST + ++ K +++ P VVR P
Sbjct: 146 DGEVRMLRLELKLLAEVGIIGLPNAGKSTLIAALSAARPKIADYPFTTLVPNLGVVRKPT 205
Query: 63 KKLTLFALRLAILEKTATGLGT----LGFIWATVVLLGGFAIT-LDKTD-FWFITIILLI 116
T+FA ++E + GLG L I T +LL IT +D + F I L +
Sbjct: 206 GDGTVFADIPGLIEGASAGLGLGHEFLRHIERTRLLLHLVDITDVDPVENFETIQNELEV 265
Query: 117 EGARIFSRSHELEWQHQVTWSLAGAGI----NSFRAIKSGSHHLIEAVKSM 163
G + + L + GA I N FR I G LI AV +
Sbjct: 266 YGRSLEDKRQVLALNKVDAVDVKGAEIQELVNRFREISGGKVFLISAVAGI 316
>sp|A7FQL2|Y243_CLOB1 UPF0313 protein CLB_0243 OS=Clostridium botulinum (strain ATCC
19397 / Type A) GN=CLB_0243 PE=3 SV=1
Length = 645
Score = 33.1 bits (74), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 287 VIYCKLLEEVNKECDLGPSGI-ISIRRF-FYDAYSKCVNGSIFDGLKMDMVIFGM 339
++YC ++E K+ + GI S+RRF YD + V SI + D++I+GM
Sbjct: 119 IVYCNKIKEAFKDSPIIIGGIEASLRRFAHYDYWDNSVRRSILEDSSADLLIYGM 173
>sp|A7G9V5|Y267_CLOBL UPF0313 protein CLI_0267 OS=Clostridium botulinum (strain Langeland
/ NCTC 10281 / Type F) GN=CLI_0267 PE=3 SV=1
Length = 645
Score = 33.1 bits (74), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 287 VIYCKLLEEVNKECDLGPSGI-ISIRRF-FYDAYSKCVNGSIFDGLKMDMVIFGM 339
++YC ++E K+ + GI S+RRF YD + V SI + D++I+GM
Sbjct: 119 IVYCNKIKEAFKDSPIIIGGIEASLRRFAHYDYWDNSVRRSILEDSSADLLIYGM 173
>sp|C3KYN9|Y249_CLOB6 UPF0313 protein CLJ_B0249 OS=Clostridium botulinum (strain 657 /
Type Ba4) GN=CLJ_B0249 PE=3 SV=1
Length = 639
Score = 33.1 bits (74), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 287 VIYCKLLEEVNKECDLGPSGI-ISIRRF-FYDAYSKCVNGSIFDGLKMDMVIFGM 339
++YC ++E K+ + GI S+RRF YD + V SI + D++I+GM
Sbjct: 119 IVYCNKIKEAFKDSPIIIGGIEASLRRFAHYDYWDNSVRRSILEDSSADLLIYGM 173
>sp|C1FQT8|Y251_CLOBJ UPF0313 protein CLM_0251 OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=CLM_0251 PE=3 SV=1
Length = 645
Score = 33.1 bits (74), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 287 VIYCKLLEEVNKECDLGPSGI-ISIRRF-FYDAYSKCVNGSIFDGLKMDMVIFGM 339
++YC ++E K+ + GI S+RRF YD + V SI + D++I+GM
Sbjct: 119 IVYCNKIKEAFKDSPIIIGGIEASLRRFAHYDYWDNSVRRSILEDSSADLLIYGM 173
>sp|B1ID91|Y573_CLOBK UPF0313 protein CLD_0573 OS=Clostridium botulinum (strain Okra /
Type B1) GN=CLD_0573 PE=3 SV=1
Length = 643
Score = 33.1 bits (74), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 287 VIYCKLLEEVNKECDLGPSGI-ISIRRF-FYDAYSKCVNGSIFDGLKMDMVIFGM 339
++YC ++E K+ + GI S+RRF YD + V SI + D++I+GM
Sbjct: 119 IVYCNKIKEAFKDSPIIIGGIEASLRRFAHYDYWDNSVRRSILEDSSADLLIYGM 173
>sp|B1KSX3|Y3381_CLOBM UPF0313 protein CLK_3381 OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=CLK_3381 PE=3 SV=1
Length = 645
Score = 33.1 bits (74), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 287 VIYCKLLEEVNKECDLGPSGI-ISIRRF-FYDAYSKCVNGSIFDGLKMDMVIFGM 339
++YC ++E K+ + GI S+RRF YD + V SI + D++I+GM
Sbjct: 119 IVYCNKIKEAFKDSPIIIGGIEASLRRFAHYDYWDNSVRRSILEDSSADLLIYGM 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 280,276,738
Number of Sequences: 539616
Number of extensions: 11208629
Number of successful extensions: 28844
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 28842
Number of HSP's gapped (non-prelim): 22
length of query: 826
length of database: 191,569,459
effective HSP length: 126
effective length of query: 700
effective length of database: 123,577,843
effective search space: 86504490100
effective search space used: 86504490100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)