Query 003365
Match_columns 826
No_of_seqs 185 out of 216
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 22:08:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 99.0 6.2E-08 1.3E-12 125.3 29.4 283 332-666 12-312 (2102)
2 PF05804 KAP: Kinesin-associat 98.8 7.3E-07 1.6E-11 107.0 25.1 316 401-790 268-588 (708)
3 PLN03200 cellulose synthase-in 98.8 5.5E-07 1.2E-11 116.8 24.3 332 338-725 409-780 (2102)
4 KOG4224 Armadillo repeat prote 98.4 3.1E-06 6.7E-11 92.8 12.8 278 332-666 151-446 (550)
5 PF05804 KAP: Kinesin-associat 98.4 0.00026 5.6E-09 85.5 30.1 356 377-801 288-690 (708)
6 KOG0166 Karyopherin (importin) 97.6 0.0036 7.7E-08 72.9 19.2 300 335-670 68-397 (514)
7 KOG0166 Karyopherin (importin) 97.3 0.011 2.5E-07 68.8 19.3 214 520-754 85-302 (514)
8 KOG4224 Armadillo repeat prote 97.3 0.013 2.9E-07 65.1 17.7 273 336-665 211-492 (550)
9 PF10508 Proteasom_PSMB: Prote 97.0 0.02 4.4E-07 67.3 17.6 235 396-669 174-423 (503)
10 PF10508 Proteasom_PSMB: Prote 96.9 0.081 1.8E-06 62.3 21.3 227 384-667 43-279 (503)
11 PF04826 Arm_2: Armadillo-like 96.6 0.044 9.5E-07 59.1 14.3 197 423-671 11-210 (254)
12 cd00020 ARM Armadillo/beta-cat 96.5 0.016 3.4E-07 52.8 9.1 111 548-666 7-120 (120)
13 KOG4199 Uncharacterized conser 96.5 0.24 5.1E-06 55.2 19.0 292 325-673 140-453 (461)
14 PF04826 Arm_2: Armadillo-like 96.3 0.015 3.2E-07 62.7 9.0 179 376-604 9-187 (254)
15 COG5064 SRP1 Karyopherin (impo 95.2 0.13 2.7E-06 57.2 10.6 277 342-655 80-385 (526)
16 cd00256 VATPase_H VATPase_H, r 95.0 3.2 7E-05 48.2 21.8 252 517-790 117-424 (429)
17 cd00020 ARM Armadillo/beta-cat 94.7 0.33 7.2E-06 44.0 10.6 110 592-709 7-119 (120)
18 KOG1048 Neural adherens juncti 94.6 0.26 5.7E-06 59.6 12.1 151 515-669 533-687 (717)
19 KOG1222 Kinesin associated pro 93.2 1.7 3.7E-05 50.5 14.4 179 513-709 275-454 (791)
20 PRK09687 putative lyase; Provi 93.1 7.1 0.00015 42.8 18.7 93 546-665 157-249 (280)
21 KOG2759 Vacuolar H+-ATPase V1 93.1 16 0.00034 42.3 21.5 256 514-790 127-437 (442)
22 PF05536 Neurochondrin: Neuroc 92.8 12 0.00025 45.1 21.3 226 521-767 25-263 (543)
23 COG5064 SRP1 Karyopherin (impo 92.7 3 6.4E-05 46.8 14.9 172 564-753 129-307 (526)
24 KOG1048 Neural adherens juncti 92.0 13 0.00028 45.7 20.3 388 338-781 238-699 (717)
25 KOG2171 Karyopherin (importin) 92.0 20 0.00044 45.8 22.4 93 547-648 117-211 (1075)
26 KOG2171 Karyopherin (importin) 89.8 72 0.0016 41.1 27.7 72 332-411 117-188 (1075)
27 PF03224 V-ATPase_H_N: V-ATPas 89.7 14 0.0003 40.8 16.9 219 333-639 55-283 (312)
28 PF06025 DUF913: Domain of Unk 88.0 8.5 0.00018 44.1 14.0 139 513-654 72-211 (379)
29 PF00514 Arm: Armadillo/beta-c 86.8 1.1 2.4E-05 34.3 4.2 39 628-666 1-41 (41)
30 PF11865 DUF3385: Domain of un 85.7 8.7 0.00019 38.7 11.1 144 544-708 6-155 (160)
31 KOG0946 ER-Golgi vesicle-tethe 85.2 9.7 0.00021 46.9 12.7 240 374-649 17-264 (970)
32 PF12348 CLASP_N: CLASP N term 85.1 11 0.00025 38.9 12.1 197 458-685 18-225 (228)
33 KOG0168 Putative ubiquitin fus 84.7 61 0.0013 40.7 19.0 221 548-792 211-440 (1051)
34 KOG0213 Splicing factor 3b, su 84.3 67 0.0015 39.9 18.8 99 651-766 852-955 (1172)
35 PRK09687 putative lyase; Provi 84.3 61 0.0013 35.6 17.7 66 548-625 54-119 (280)
36 KOG2122 Beta-catenin-binding p 83.9 7.4 0.00016 50.7 11.3 189 466-667 317-515 (2195)
37 PF14664 RICTOR_N: Rapamycin-i 83.8 82 0.0018 36.1 19.0 117 462-598 40-157 (371)
38 KOG4199 Uncharacterized conser 81.5 30 0.00064 39.3 13.7 128 538-671 270-408 (461)
39 PF03224 V-ATPase_H_N: V-ATPas 81.3 18 0.0004 39.9 12.4 163 517-690 121-291 (312)
40 KOG2122 Beta-catenin-binding p 81.1 23 0.00051 46.5 14.1 179 473-668 220-425 (2195)
41 PF14852 Fis1_TPR_N: Fis1 N-te 79.3 1.5 3.2E-05 33.4 2.1 30 335-364 5-34 (35)
42 PF01602 Adaptin_N: Adaptin N 79.1 1.3E+02 0.0029 34.9 22.3 212 380-666 153-369 (526)
43 KOG0946 ER-Golgi vesicle-tethe 78.6 1.9E+02 0.0041 36.4 25.8 223 309-568 108-335 (970)
44 KOG0168 Putative ubiquitin fus 77.8 29 0.00064 43.3 13.2 147 570-722 189-335 (1051)
45 PRK13800 putative oxidoreducta 77.7 1.2E+02 0.0026 38.8 19.4 32 377-411 650-681 (897)
46 KOG2973 Uncharacterized conser 77.4 40 0.00087 37.8 13.0 201 567-784 59-291 (353)
47 KOG1222 Kinesin associated pro 76.9 42 0.00092 39.6 13.5 120 462-605 319-438 (791)
48 KOG1789 Endocytosis protein RM 74.2 1.3E+02 0.0029 38.9 17.3 98 462-582 1787-1886(2235)
49 COG5240 SEC21 Vesicle coat com 68.9 55 0.0012 39.5 12.2 104 548-671 303-409 (898)
50 KOG3678 SARM protein (with ste 68.8 1.2E+02 0.0025 36.0 14.5 75 712-790 360-435 (832)
51 PF05536 Neurochondrin: Neuroc 65.7 1.2E+02 0.0027 36.5 14.9 180 462-671 72-266 (543)
52 PF08324 PUL: PUL domain; Int 65.2 91 0.002 33.4 12.6 143 565-712 78-230 (268)
53 PF05918 API5: Apoptosis inhib 63.4 1.9E+02 0.0042 35.0 15.7 114 548-670 178-301 (556)
54 KOG4231 Intracellular membrane 62.0 71 0.0015 38.0 11.3 181 473-669 231-444 (763)
55 PF04063 DUF383: Domain of unk 61.8 43 0.00093 35.0 8.9 100 590-692 50-158 (192)
56 PRK13800 putative oxidoreducta 61.6 4.5E+02 0.0097 33.7 20.5 45 377-435 619-663 (897)
57 smart00185 ARM Armadillo/beta- 60.5 14 0.0003 27.4 3.8 36 630-665 3-40 (41)
58 KOG4500 Rho/Rac GTPase guanine 58.8 2.7E+02 0.0058 33.0 14.9 204 566-791 289-519 (604)
59 COG5240 SEC21 Vesicle coat com 58.1 2.1E+02 0.0046 34.9 14.3 89 564-666 389-477 (898)
60 PF12755 Vac14_Fab1_bd: Vacuol 57.6 43 0.00094 31.0 7.3 66 591-664 26-94 (97)
61 PF08167 RIX1: rRNA processing 56.1 1.2E+02 0.0026 30.6 10.8 118 639-768 25-146 (165)
62 PF00514 Arm: Armadillo/beta-c 55.7 20 0.00043 27.3 4.0 31 377-410 10-40 (41)
63 KOG1062 Vesicle coat complex A 55.2 3.6E+02 0.0078 34.1 16.0 213 562-787 306-593 (866)
64 PF12031 DUF3518: Domain of un 54.2 32 0.0007 37.3 6.5 136 523-666 12-202 (257)
65 PF07814 WAPL: Wings apart-lik 52.1 4.1E+02 0.0088 30.3 15.5 291 332-631 20-360 (361)
66 PF14225 MOR2-PAG1_C: Cell mor 48.5 4E+02 0.0087 29.2 15.5 42 338-388 12-53 (262)
67 PF01602 Adaptin_N: Adaptin N 46.5 5.3E+02 0.011 30.0 25.9 249 338-668 47-298 (526)
68 PF12612 TFCD_C: Tubulin foldi 45.5 3.5E+02 0.0076 27.8 12.5 95 610-709 20-136 (193)
69 KOG1242 Protein containing ada 43.4 80 0.0017 38.2 8.2 381 309-763 107-521 (569)
70 PF13646 HEAT_2: HEAT repeats; 43.0 2.1E+02 0.0046 24.5 9.1 81 552-660 3-86 (88)
71 COG5231 VMA13 Vacuolar H+-ATPa 41.6 6E+02 0.013 29.2 16.8 205 548-789 191-426 (432)
72 KOG1062 Vesicle coat complex A 41.5 8.6E+02 0.019 31.0 19.6 107 514-631 217-328 (866)
73 PF13646 HEAT_2: HEAT repeats; 40.3 65 0.0014 27.7 5.4 47 377-437 29-75 (88)
74 KOG2956 CLIP-associating prote 39.9 5.7E+02 0.012 30.6 13.9 158 548-724 329-491 (516)
75 PF12031 DUF3518: Domain of un 39.4 94 0.002 33.9 7.2 83 565-650 139-227 (257)
76 PF13513 HEAT_EZ: HEAT-like re 37.6 63 0.0014 25.9 4.5 48 613-664 3-55 (55)
77 KOG2160 Armadillo/beta-catenin 35.2 4.1E+02 0.0089 30.4 11.7 136 519-666 101-240 (342)
78 KOG1242 Protein containing ada 34.8 1.3E+02 0.0028 36.5 8.1 128 548-690 368-501 (569)
79 PF02985 HEAT: HEAT repeat; I 34.6 56 0.0012 23.5 3.3 27 641-667 2-30 (31)
80 PF10521 DUF2454: Protein of u 34.5 6.5E+02 0.014 27.5 13.6 121 640-768 120-256 (282)
81 PF08045 CDC14: Cell division 33.0 2.9E+02 0.0063 30.3 9.9 105 563-672 104-210 (257)
82 TIGR03474 incFII_RepA incFII f 32.9 47 0.001 35.8 3.7 40 269-312 66-108 (275)
83 PRK13750 replication protein; 32.8 45 0.00098 36.2 3.6 40 269-312 74-116 (285)
84 KOG4464 Signaling protein RIC- 31.1 87 0.0019 36.5 5.6 74 612-701 388-482 (532)
85 KOG2734 Uncharacterized conser 31.0 6.4E+02 0.014 30.0 12.4 220 379-637 125-359 (536)
86 KOG0213 Splicing factor 3b, su 29.4 6.9E+02 0.015 31.7 12.8 62 651-715 567-628 (1172)
87 KOG1293 Proteins containing ar 29.3 1.1E+03 0.023 29.4 14.4 139 515-669 348-493 (678)
88 KOG1789 Endocytosis protein RM 29.2 4.6E+02 0.0099 34.5 11.5 160 517-691 1741-1907(2235)
89 smart00185 ARM Armadillo/beta- 29.0 1E+02 0.0023 22.5 4.2 29 548-578 12-40 (41)
90 COG5181 HSH155 U2 snRNP splice 28.8 5.9E+02 0.013 31.6 11.9 74 640-715 643-721 (975)
91 PF14664 RICTOR_N: Rapamycin-i 28.7 4.8E+02 0.01 30.0 11.2 103 515-631 39-142 (371)
92 PF07571 DUF1546: Protein of u 27.9 1E+02 0.0023 28.2 4.7 54 652-706 21-75 (92)
93 PF13764 E3_UbLigase_R4: E3 ub 27.7 1.4E+03 0.03 29.3 17.6 177 379-603 84-273 (802)
94 KOG4151 Myosin assembly protei 27.1 33 0.00072 42.4 1.6 39 613-651 643-682 (748)
95 KOG2973 Uncharacterized conser 26.5 4.9E+02 0.011 29.6 10.2 92 563-664 16-109 (353)
96 PF12054 DUF3535: Domain of un 26.5 80 0.0017 37.1 4.6 55 591-670 311-365 (441)
97 KOG4646 Uncharacterized conser 26.2 87 0.0019 31.5 4.0 103 561-670 28-132 (173)
98 PF11841 DUF3361: Domain of un 24.9 3.4E+02 0.0073 27.8 8.1 119 424-577 11-129 (160)
99 PTZ00429 beta-adaptin; Provisi 23.8 1.6E+03 0.034 28.5 25.9 103 290-411 222-326 (746)
100 COG1414 IclR Transcriptional r 22.2 1.6E+02 0.0034 31.7 5.6 42 352-393 5-51 (246)
101 cd03561 VHS VHS domain family; 21.7 3.2E+02 0.0069 26.4 7.1 67 342-411 46-112 (133)
102 PF05918 API5: Apoptosis inhib 21.6 1.5E+03 0.033 27.6 18.9 83 552-649 24-106 (556)
103 KOG3723 PH domain protein Melt 20.8 1.5E+03 0.033 27.9 13.2 107 524-638 61-178 (851)
104 PF09758 FPL: Uncharacterised 20.5 1E+02 0.0022 31.1 3.4 36 754-789 2-37 (149)
105 PF12460 MMS19_C: RNAPII trans 20.2 1.3E+03 0.029 26.4 18.8 119 639-771 271-400 (415)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.04 E-value=6.2e-08 Score=125.27 Aligned_cols=283 Identities=21% Similarity=0.253 Sum_probs=218.9
Q ss_pred cchhHHHHHhhcCC--CcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 003365 332 MDMVIFGMELLDSN--SPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKL 409 (826)
Q Consensus 332 ~~LVtFA~dll~S~--S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~L 409 (826)
+.-|.|.++-|.+. |+++|-.++.-|..|.+..+. .-+-|....+.+..|+.+|... +.++|..|+.++..|
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~e---nR~~Ia~~aGaIP~LV~lL~sg---~~~vk~nAaaaL~nL 85 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREE---ARKAIGSHSQAMPLLVSLLRSG---TLGAKVNAAAVLGVL 85 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChH---HHHHHHHccCcHHHHHHHHcCC---CHHHHHHHHHHHHHH
Confidence 56789999999977 778999999999999987652 2222555688999999999743 478999999999999
Q ss_pred hccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhcc--c-ccccccc
Q 003365 410 AGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNH--D-NCGKIGN 486 (826)
Q Consensus 410 A~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~--~-NC~~I~~ 486 (826)
+.++.|.-.|.. +|++..+-.+|+.++. +.......+|..|+.+. | |...|..
T Consensus 86 S~~e~nk~~Iv~-~GaIppLV~LL~sGs~-----------------------eaKe~AA~AL~sLS~~~~~D~~~~~I~v 141 (2102)
T PLN03200 86 CKEEDLRVKVLL-GGCIPPLLSLLKSGSA-----------------------EAQKAAAEAIYAVSSGGLSDHVGSKIFS 141 (2102)
T ss_pred hcCHHHHHHHHH-cCChHHHHHHHHCCCH-----------------------HHHHHHHHHHHHHHcCcchhhhhhhhhh
Confidence 998777766775 8999999999986531 33456788999999864 4 4457877
Q ss_pred ccCchhhhhcccccchhhhcccCCChhHHH-HHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChH
Q 003365 487 TRGLLPKIIDFTHAEESLLRNEHDTSSQIL-TVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPL 565 (826)
Q Consensus 487 t~gLIsKII~ft~~~~~ll~~~~~~~~~~~-iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~e 565 (826)
+.|.||.++......+ .+.. +.+.+.-+|..|+...++.+ +.|.+. ..+..|.++|.++ +++
T Consensus 142 ~~GaVp~Lv~lL~~gs----------k~d~~L~~~Av~AL~nLs~~~en~~----~~IIea-GaVp~LV~LLsS~--d~~ 204 (2102)
T PLN03200 142 TEGVVPSLWDQLQPGN----------KQDKVVEGLLTGALRNLCGSTDGFW----SATLEA-GGVDILVKLLSSG--NSD 204 (2102)
T ss_pred hcCChHHHHHHHhCCc----------hhhHHHHHHHHHHHHHHhcCccchH----HHHHHc-CCHHHHHHHHcCC--CHH
Confidence 8899999998664321 1223 33557889999998876655 455555 6888899999764 489
Q ss_pred HHHHHHHHHHhccCC-ccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHH
Q 003365 566 LQKLGIDILTSLALE-EDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKL 644 (826)
Q Consensus 566 Lq~lAi~ILt~LA~D-~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~L 644 (826)
+|..|+.+|.+++.. ++.++.+...+ .|..|++ |+.++ +...+|..|..||..|+.++..+...|.+.+.+..|
T Consensus 205 lQ~eAa~aLa~Lass~ee~~~aVIeaG-aVP~LV~-LL~sg---~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~L 279 (2102)
T PLN03200 205 AQANAASLLARLMMAFESSISKVLDAG-AVKQLLK-LLGQG---NEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPAL 279 (2102)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHCC-CHHHHHH-HHccC---CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH
Confidence 999999999999876 55677766554 4688998 66543 223578899999999999999999999988889999
Q ss_pred HHhhccch-----------hHHHHHHHHHHHhh
Q 003365 645 VETLAVPL-----------VRVNAARILRNLCA 666 (826)
Q Consensus 645 v~mL~d~~-----------~r~~AA~IL~nLC~ 666 (826)
+..+..+. .+..|+.-|.|+|.
T Consensus 280 I~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 280 INATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 98886422 37799999999997
No 2
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.81 E-value=7.3e-07 Score=107.00 Aligned_cols=316 Identities=18% Similarity=0.270 Sum_probs=215.8
Q ss_pred HHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhcccc
Q 003365 401 SAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDN 480 (826)
Q Consensus 401 ~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~N 480 (826)
.|-.++.+||.+.++...+.. .|.++.+.++|+.+.. ++...-+..|+||+...+|
T Consensus 268 v~~~lLlNLAed~~ve~kM~~-~~iV~~Lv~~Ldr~n~-----------------------ellil~v~fLkkLSi~~EN 323 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVN-KGIVSLLVKCLDRENE-----------------------ELLILAVTFLKKLSIFKEN 323 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHh-cCCHHHHHHHHcCCCH-----------------------HHHHHHHHHHHHHcCCHHH
Confidence 444567777776444444443 6888888898885421 5677889999999999999
Q ss_pred ccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccC
Q 003365 481 CGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHG 560 (826)
Q Consensus 481 C~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~ 560 (826)
-.+|... |.|+|++.+.+.. -.+++..+|++|.+|+.. ..+|.+|.+. .++..|...|.++
T Consensus 324 K~~m~~~-giV~kL~kLl~s~------------~~~l~~~aLrlL~NLSfd-----~~~R~~mV~~-GlIPkLv~LL~d~ 384 (708)
T PF05804_consen 324 KDEMAES-GIVEKLLKLLPSE------------NEDLVNVALRLLFNLSFD-----PELRSQMVSL-GLIPKLVELLKDP 384 (708)
T ss_pred HHHHHHc-CCHHHHHHHhcCC------------CHHHHHHHHHHHHHhCcC-----HHHHHHHHHC-CCcHHHHHHhCCC
Confidence 9999866 9999999877431 135678899999999987 5678999888 7888999999764
Q ss_pred CCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhh
Q 003365 561 EKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKV 640 (826)
Q Consensus 561 ~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~v 640 (826)
. .+..|..||-+|++|++.|..+..|+ .|..|+++.+... ++ .+...+--.+..|| -++.|+..|.+.+.
T Consensus 385 ~----~~~val~iLy~LS~dd~~r~~f~~Td-cIp~L~~~Ll~~~-~~---~v~~eliaL~iNLa-~~~rnaqlm~~g~g 454 (708)
T PF05804_consen 385 N----FREVALKILYNLSMDDEARSMFAYTD-CIPQLMQMLLENS-EE---EVQLELIALLINLA-LNKRNAQLMCEGNG 454 (708)
T ss_pred c----hHHHHHHHHHHhccCHhhHHHHhhcc-hHHHHHHHHHhCC-Cc---cccHHHHHHHHHHh-cCHHHHHHHHhcCc
Confidence 3 55679999999999999999998886 5688888777653 11 12333334445565 56799998887777
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHhhhcccchhhhhhh-HHhHHHHHHHHHhchhhh--HHHHHHHhHHHHhhcCCchhh
Q 003365 641 VDKLVETLAVPLVRVNAARILRNLCASSGADCFNQLRG-VTAAAPTILKAITSEDYK--LQEVMIGLAAQVFRFMTREES 717 (826)
Q Consensus 641 i~~Lv~mL~d~~~r~~AA~IL~nLC~~s~~e~~~~Lk~-l~~alp~VL~~I~~~e~k--~LE~ligLa~qIc~~i~~edf 717 (826)
++.|++..-. ..-....+++||++.|.++ ++. ..+.+....+.+...++. ..|+ +|..+.+- ++..++
T Consensus 455 L~~L~~ra~~-~~D~lLlKlIRNiS~h~~~-----~k~~f~~~i~~L~~~v~~~~~ee~~vE~-LGiLaNL~--~~~ld~ 525 (708)
T PF05804_consen 455 LQSLMKRALK-TRDPLLLKLIRNISQHDGP-----LKELFVDFIGDLAKIVSSGDSEEFVVEC-LGILANLT--IPDLDW 525 (708)
T ss_pred HHHHHHHHHh-cccHHHHHHHHHHHhcCch-----HHHHHHHHHHHHHHHhhcCCcHHHHHHH-HHHHHhcc--cCCcCH
Confidence 8888765322 1123566899999998754 222 334455555555544332 2333 34333322 123477
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHH--HhcCCccHHHHHhhcHHHHHHHHHHHh
Q 003365 718 SNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWM--MRDKATNVHIFKNLGLEMVLESVIETT 790 (826)
Q Consensus 718 a~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~m--m~~~~~y~~~f~e~~m~eaL~~v~~T~ 790 (826)
++.+++. .|+.-|++.|... ..-+ -+++|.+|+. +-.++..+..+-+.|+.+.|-.+-..-
T Consensus 526 ~~ll~~~-----~llp~L~~~L~~g----~~~d---Dl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~k 588 (708)
T PF05804_consen 526 AQLLQEY-----NLLPWLKDLLKPG----ASED---DLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAK 588 (708)
T ss_pred HHHHHhC-----CHHHHHHHHhCCC----CCCh---HHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhh
Confidence 7877754 3777788877633 2223 3666655544 456778888888889999888877543
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.78 E-value=5.5e-07 Score=116.81 Aligned_cols=332 Identities=14% Similarity=0.143 Sum_probs=212.1
Q ss_pred HHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccC-CCc
Q 003365 338 GMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKK-QNS 416 (826)
Q Consensus 338 A~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~-~ns 416 (826)
=++++.+...+.|-..++-|..+...+... ++.......++.|+++|+-.+ .++|..|++.+..|+... .+.
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~----~~aIi~~ggIp~LV~LL~s~s---~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCCGKGGL----WEALGGREGVQLLISLLGLSS---EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhCCCHHH----HHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHHcCCHHHH
Confidence 456677777777777777777777554311 111223357999999998643 689999999999998632 222
Q ss_pred eEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhc
Q 003365 417 LRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIID 496 (826)
Q Consensus 417 Lrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ 496 (826)
--|+. .|++..+..||.+++. +......-+|-+|+.+.+||+.+-...|.|+.+++
T Consensus 482 ~aIie-aGaIP~LV~LL~s~~~-----------------------~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~ 537 (2102)
T PLN03200 482 WAITA-AGGIPPLVQLLETGSQ-----------------------KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLW 537 (2102)
T ss_pred HHHHH-CCCHHHHHHHHcCCCH-----------------------HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHH
Confidence 23333 7999999999986532 22344667999999999999987655599999998
Q ss_pred ccccchhhhcccCCChhHHHHHHHHHHHHHHHh----------------------------------hCccchhhHHHHH
Q 003365 497 FTHAEESLLRNEHDTSSQILTVRRSLQLVKMLA----------------------------------STTGITGEHLRRE 542 (826)
Q Consensus 497 ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLa----------------------------------s~~Ge~G~~LR~e 542 (826)
+....+. +..+.++..|.+|+ +... +....++
T Consensus 538 LL~sgd~------------~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~--~~d~~~~ 603 (2102)
T PLN03200 538 LLKNGGP------------KGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVAS--LEDLVRE 603 (2102)
T ss_pred HHhCCCH------------HHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc--hhHHHHH
Confidence 7643210 11133334444433 2111 1222233
Q ss_pred HhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCc-cccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 003365 543 ISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEE-DATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEAL 621 (826)
Q Consensus 543 IS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~-~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeAL 621 (826)
.......+..|.++|+++. ++.|+.|..+|.+++-.. +..+.+.. .+.|..|+... .. +....++.|..||
T Consensus 604 g~~~~ggL~~Lv~LL~sgs--~~ikk~Aa~iLsnL~a~~~d~~~avv~-agaIpPLV~LL-ss----~~~~v~keAA~AL 675 (2102)
T PLN03200 604 GSAANDALRTLIQLLSSSK--EETQEKAASVLADIFSSRQDLCESLAT-DEIINPCIKLL-TN----NTEAVATQSARAL 675 (2102)
T ss_pred hhhccccHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHH-hc----CChHHHHHHHHHH
Confidence 3434578999999999874 899999999999996432 22232222 34557777744 32 2344788999999
Q ss_pred HHHhccC-cchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHH
Q 003365 622 AMLALDS-KSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQ 698 (826)
Q Consensus 622 amLa~es-~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~L 698 (826)
..|+... ++|...+.++++++-|+++|.+ ++.+..|+..|.|++.+.... .+.. -.+.+|...+-+-+...+.-
T Consensus 676 ~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~--~ei~-~~~~I~~Lv~lLr~G~~~~k 752 (2102)
T PLN03200 676 AALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA--AEAL-AEDIILPLTRVLREGTLEGK 752 (2102)
T ss_pred HHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH--HHHH-hcCcHHHHHHHHHhCChHHH
Confidence 9998643 4566777777899999999986 477889999999999865421 1110 12345554444444444444
Q ss_pred HHHHHhHHHHhhcCCchh-hHHHHHhcC
Q 003365 699 EVMIGLAAQVFRFMTREE-SSNIFERAG 725 (826)
Q Consensus 699 E~ligLa~qIc~~i~~ed-fa~~l~~~~ 725 (826)
|-...--.|+|+--+.+| |.+-....|
T Consensus 753 ~~Aa~AL~~L~~~~~~~~~~~~~~~~~g 780 (2102)
T PLN03200 753 RNAARALAQLLKHFPVDDVLKDSVQCRG 780 (2102)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhC
Confidence 444555567777544444 544444433
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=3.1e-06 Score=92.80 Aligned_cols=278 Identities=18% Similarity=0.223 Sum_probs=187.6
Q ss_pred cchhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchH-----HHHHhc---------cCHHHHHHHHHHhCCCCcccHH
Q 003365 332 MDMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDD-----TLQKIG---------INLSVIERFVEMLNWKDPQEEE 397 (826)
Q Consensus 332 ~~LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~-----~L~kl~---------tS~~~i~rLi~ML~wts~~d~e 397 (826)
+||+|| |..++. =-.+.|.-+|-.+.++++-+.+ .|..++ -+.+++.-|++.|..++ .+
T Consensus 151 tnLaT~--d~nk~k--iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d---~d 223 (550)
T KOG4224|consen 151 TNLATF--DSNKVK--IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGD---LD 223 (550)
T ss_pred hhhhcc--ccchhh--hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCC---hh
Confidence 688888 332222 1245667778887777755432 233333 34567888888887665 57
Q ss_pred HHHHHHHHHHHHhccCCCceEEec-ccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhh
Q 003365 398 IRRSAAEILSKLAGKKQNSLRVAG-IPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLAR 476 (826)
Q Consensus 398 iR~~AArIva~LA~~~~nsLrv~~-iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~ 476 (826)
+|.|+.--+..+|-++++.=++++ =|.-+....+|.|++.. ..+.|.-.-|.+||.
T Consensus 224 vqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~-----------------------kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 224 VQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSD-----------------------KVKCQAGLALRNLAS 280 (550)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCCh-----------------------HHHHHHHHHHhhhcc
Confidence 999999988888877655555554 26677777777776542 346677778999999
Q ss_pred ccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHH
Q 003365 477 NHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDI 556 (826)
Q Consensus 477 D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~I 556 (826)
|...-++|..+ |-||-.+.+++.. -...+-.|.--++.++-.||+.+ -|.+- ..++.|.++
T Consensus 281 dt~Yq~eiv~a-g~lP~lv~Llqs~------------~~plilasVaCIrnisihplNe~-----lI~da-gfl~pLVrl 341 (550)
T KOG4224|consen 281 DTEYQREIVEA-GSLPLLVELLQSP------------MGPLILASVACIRNISIHPLNEV-----LIADA-GFLRPLVRL 341 (550)
T ss_pred cchhhhHHHhc-CCchHHHHHHhCc------------chhHHHHHHHHHhhcccccCccc-----ceecc-cchhHHHHH
Confidence 99999999988 7778888765321 22345667778888998998866 23333 567899999
Q ss_pred HccCCCChHHHHHHHHHHHhccC-CccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHH
Q 003365 557 LLHGEKHPLLQKLGIDILTSLAL-EEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRI 635 (826)
Q Consensus 557 L~~~~~~~eLq~lAi~ILt~LA~-D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~I 635 (826)
|+++. +.|.|-.|...|++||- .+..+..|-..+. |.+|....++.. -+ ++-.---++|.|+.. .+.-...
T Consensus 342 L~~~d-nEeiqchAvstLrnLAasse~n~~~i~esgA-i~kl~eL~lD~p-vs----vqseisac~a~Lal~-d~~k~~l 413 (550)
T KOG4224|consen 342 LRAGD-NEEIQCHAVSTLRNLAASSEHNVSVIRESGA-IPKLIELLLDGP-VS----VQSEISACIAQLALN-DNDKEAL 413 (550)
T ss_pred HhcCC-chhhhhhHHHHHHHHhhhhhhhhHHHhhcCc-hHHHHHHHhcCC-hh----HHHHHHHHHHHHHhc-cccHHHH
Confidence 99874 57899999999999986 4555555554443 467777555542 11 222223345666532 2334455
Q ss_pred HhhhhHHHHHHhhcc--chhHHHHHHHHHHHhh
Q 003365 636 LKLKVVDKLVETLAV--PLVRVNAARILRNLCA 666 (826)
Q Consensus 636 Lke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~ 666 (826)
+..+.++-|+.++.+ .+.+-.||.-|-|||.
T Consensus 414 ld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 414 LDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred hhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 555778888888766 5778899999999986
No 5
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.37 E-value=0.00026 Score=85.53 Aligned_cols=356 Identities=18% Similarity=0.226 Sum_probs=212.2
Q ss_pred CHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhcccc
Q 003365 377 NLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHA 456 (826)
Q Consensus 377 S~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~ 456 (826)
..+.+.-|+++|... +.+....|...+.+|+-.+.|.-.+.. .|+++.+.-||+.++.
T Consensus 288 ~~~iV~~Lv~~Ldr~---n~ellil~v~fLkkLSi~~ENK~~m~~-~giV~kL~kLl~s~~~------------------ 345 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRE---NEELLILAVTFLKKLSIFKENKDEMAE-SGIVEKLLKLLPSENE------------------ 345 (708)
T ss_pred hcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHhcCCCH------------------
Confidence 357788999999854 468999999999999987666655655 6899999999986532
Q ss_pred ccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchh
Q 003365 457 NYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITG 536 (826)
Q Consensus 457 ~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G 536 (826)
++...++++|-+|+-|++++..|.+. |+|||++++.... ... ..++++|..|.-.. -+
T Consensus 346 -----~l~~~aLrlL~NLSfd~~~R~~mV~~-GlIPkLv~LL~d~-----------~~~---~val~iLy~LS~dd--~~ 403 (708)
T PF05804_consen 346 -----DLVNVALRLLFNLSFDPELRSQMVSL-GLIPKLVELLKDP-----------NFR---EVALKILYNLSMDD--EA 403 (708)
T ss_pred -----HHHHHHHHHHHHhCcCHHHHHHHHHC-CCcHHHHHHhCCC-----------chH---HHHHHHHHHhccCH--hh
Confidence 46778999999999999999999988 9999999877321 112 24788888887652 22
Q ss_pred hHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHH
Q 003365 537 EHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIA 616 (826)
Q Consensus 537 ~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~ 616 (826)
|..+ .....+..|..+|-.+. .++.+.-++.++.|||.+...-+.|-.-++ ++.|++.-+... +.+
T Consensus 404 ---r~~f-~~TdcIp~L~~~Ll~~~-~~~v~~eliaL~iNLa~~~rnaqlm~~g~g-L~~L~~ra~~~~-----D~l--- 469 (708)
T PF05804_consen 404 ---RSMF-AYTDCIPQLMQMLLENS-EEEVQLELIALLINLALNKRNAQLMCEGNG-LQSLMKRALKTR-----DPL--- 469 (708)
T ss_pred ---HHHH-hhcchHHHHHHHHHhCC-CccccHHHHHHHHHHhcCHHHHHHHHhcCc-HHHHHHHHHhcc-----cHH---
Confidence 3333 33357788877765442 244455578999999999877676654334 477777544432 211
Q ss_pred HHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc---chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHH---
Q 003365 617 AGEALAMLALDSKSNCHRILKLKVVDKLVETLAV---PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAI--- 690 (826)
Q Consensus 617 AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d---~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I--- 690 (826)
.-..+=++|.++. +....+. +.|.+|++.+.. +++.+-+--+|.||-.. ..++..-+++ .+.+|..-+..
T Consensus 470 LlKlIRNiS~h~~-~~k~~f~-~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~-~ld~~~ll~~-~~llp~L~~~L~~g 545 (708)
T PF05804_consen 470 LLKLIRNISQHDG-PLKELFV-DFIGDLAKIVSSGDSEEFVVECLGILANLTIP-DLDWAQLLQE-YNLLPWLKDLLKPG 545 (708)
T ss_pred HHHHHHHHHhcCc-hHHHHHH-HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC-CcCHHHHHHh-CCHHHHHHHHhCCC
Confidence 1123445665543 3443332 678888887764 46677777777787642 1122111211 11222221111
Q ss_pred hchhhhHHHHHHHhH------------------HHHhhcCC----chhh--------HHHHHhcCCChH------HHHHH
Q 003365 691 TSEDYKLQEVMIGLA------------------AQVFRFMT----REES--------SNIFERAGIMEI------DLANT 734 (826)
Q Consensus 691 ~~~e~k~LE~ligLa------------------~qIc~~i~----~edf--------a~~l~~~~i~~~------~fv~k 734 (826)
...+.-.||+.+=+. .+++.++. ++|| -+-+.| +.+.+ +.+..
T Consensus 546 ~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~y 624 (708)
T PF05804_consen 546 ASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAY 624 (708)
T ss_pred CCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHH
Confidence 122334455433222 22222111 1111 111221 11111 12222
Q ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCccHHHHHhhcHH----HHHHHHHH-HhhcccceEEeeC
Q 003365 735 LVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKATNVHIFKNLGLE----MVLESVIE-TTAEIENFNIFSG 801 (826)
Q Consensus 735 Lv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~~y~~~f~e~~m~----eaL~~v~~-T~S~lEny~~FsG 801 (826)
|.+.+. ...|-|||++=...=-+|+++..+++..+...-. +=|++|+. +..+-|.++.|..
T Consensus 625 lidL~~------d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~~~~~~~~~~~~~~~d 690 (708)
T PF05804_consen 625 LIDLMH------DKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVESQQLDDNDDYLDYGD 690 (708)
T ss_pred HHHHhc------CCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHhcccccccccccCCCC
Confidence 333222 2356799998888888999998888775544333 47889965 4445555555543
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.0036 Score=72.87 Aligned_cols=300 Identities=19% Similarity=0.265 Sum_probs=198.4
Q ss_pred hHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCC
Q 003365 335 VIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQ 414 (826)
Q Consensus 335 VtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~ 414 (826)
.+=-+..+.|+.+..|++++.=+..++.+++.. . +..+..+ +++.+||+-|.+.. +..++.-||+.+.++|...+
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~p-p-i~~vi~~-G~v~~lV~~l~~~~--~~~lq~eAAWaLTnIAsgts 142 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNP-P-IDEVIQS-GVVPRLVEFLSRDD--NPTLQFEAAWALTNIASGTS 142 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCC-C-HHHHHHc-CcHHHHHHHHccCC--ChhHHHHHHHHHHHHhcCch
Confidence 444555667888888998888888888766541 1 2222333 89999999998654 36799999999999998633
Q ss_pred CceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhh
Q 003365 415 NSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKI 494 (826)
Q Consensus 415 nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKI 494 (826)
--=+++---|++-..-.||..++. .+-.|+.-.|.+.|.|...|+...-..|.+..+
T Consensus 143 e~T~~vv~agavp~fi~Ll~s~~~-----------------------~v~eQavWALgNIagds~~~Rd~vl~~g~l~pL 199 (514)
T KOG0166|consen 143 EQTKVVVDAGAVPIFIQLLSSPSA-----------------------DVREQAVWALGNIAGDSPDCRDYVLSCGALDPL 199 (514)
T ss_pred hhccccccCCchHHHHHHhcCCcH-----------------------HHHHHHHHHHhccccCChHHHHHHHhhcchHHH
Confidence 333333334666555555554432 345677889999999999999998888999999
Q ss_pred hcccccchh--hhcc----------cCCChhHHHHHHHHHHHHHHHhhCccchh-----hHHHHHHhh----------cc
Q 003365 495 IDFTHAEES--LLRN----------EHDTSSQILTVRRSLQLVKMLASTTGITG-----EHLRREISE----------VV 547 (826)
Q Consensus 495 I~ft~~~~~--ll~~----------~~~~~~~~~iv~~SLkvL~rLas~~Ge~G-----~~LR~eIS~----------~~ 547 (826)
+.+...... ++++ ..+.....+.++..|.+|.+|.-.+-+-. =.|+ -+++ +.
T Consensus 200 l~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAls-yLsdg~ne~iq~vi~~ 278 (514)
T KOG0166|consen 200 LRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALS-YLTDGSNEKIQMVIDA 278 (514)
T ss_pred HHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhcCChHHHHHHHHc
Confidence 887654332 1111 11123455778899999999887765422 1221 1221 23
Q ss_pred hhhhhHHHHHccCCCChHHHHHHHHHHHhccCCcc-ccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhc
Q 003365 548 FTISNIRDILLHGEKHPLLQKLGIDILTSLALEED-ATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLAL 626 (826)
Q Consensus 548 f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~-~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~ 626 (826)
..+.-|.++|++.+ +..+-.|...+-|.+-..+ -.+.+-.. +.+.-|...+..+ ..+.+++.|.-++...+.
T Consensus 279 gvv~~LV~lL~~~~--~~v~~PaLRaiGNIvtG~d~QTq~vi~~-~~L~~l~~ll~~s----~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 279 GVVPRLVDLLGHSS--PKVVTPALRAIGNIVTGSDEQTQVVINS-GALPVLSNLLSSS----PKESIKKEACWTISNITA 351 (514)
T ss_pred cchHHHHHHHcCCC--cccccHHHhhccceeeccHHHHHHHHhc-ChHHHHHHHhccC----cchhHHHHHHHHHHHhhc
Confidence 45566677777664 3445556666667654322 22222111 2334445533322 344599999999999999
Q ss_pred cCcchHHHHHhhhhHHHHHHhhccchh--HHHHHHHHHHHhhhccc
Q 003365 627 DSKSNCHRILKLKVVDKLVETLAVPLV--RVNAARILRNLCASSGA 670 (826)
Q Consensus 627 es~~Nc~~ILke~vi~~Lv~mL~d~~~--r~~AA~IL~nLC~~s~~ 670 (826)
.++.--.+++..+++..|+..|+..+| |.=||-...|+|.-..+
T Consensus 352 G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~ 397 (514)
T KOG0166|consen 352 GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTP 397 (514)
T ss_pred CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCH
Confidence 998888888888999999999987544 66899999999984443
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.011 Score=68.82 Aligned_cols=214 Identities=21% Similarity=0.231 Sum_probs=137.9
Q ss_pred HHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHH
Q 003365 520 RSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFN 599 (826)
Q Consensus 520 ~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~ 599 (826)
.+.+-+++|.|..-. .-+.+-|.. .++.++.+.|..+ .++.+|.-|+++|||.|.......+.---.+.+-.+++
T Consensus 85 ~a~~~~rkllS~~~~--ppi~~vi~~--G~v~~lV~~l~~~-~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~ 159 (514)
T KOG0166|consen 85 TATQAFRKLLSKERN--PPIDEVIQS--GVVPRLVEFLSRD-DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ 159 (514)
T ss_pred HHHHHHHHHHccCCC--CCHHHHHHc--CcHHHHHHHHccC-CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH
Confidence 455556666666433 445555555 7888888888643 35899999999999999755433222111122233333
Q ss_pred HHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhccc---hhHHHHHHHHHHHhhhcccchhhhh
Q 003365 600 ILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVP---LVRVNAARILRNLCASSGADCFNQL 676 (826)
Q Consensus 600 iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d~---~~r~~AA~IL~nLC~~s~~e~~~~L 676 (826)
. +.+ ....++-.|-.||+..+-+|+.....++....++.|..++..+ ...-.|+-.|.|||.+..|- ..+
T Consensus 160 L-l~s----~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~--P~~ 232 (514)
T KOG0166|consen 160 L-LSS----PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS--PPF 232 (514)
T ss_pred H-hcC----CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC--CcH
Confidence 2 222 2345888899999999988877666677778899999988763 36668999999999987532 234
Q ss_pred hhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcC-CchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHH
Q 003365 677 RGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFM-TREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRR 754 (826)
Q Consensus 677 k~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i-~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR 754 (826)
..+..++|.++.-+...+-..+. --+-.|+-+- .+.|-.+..=++| .+.+|++.|. |.+|+...|.+|=
T Consensus 233 ~~v~~iLp~L~~ll~~~D~~Vl~---Da~WAlsyLsdg~ne~iq~vi~~g-----vv~~LV~lL~-~~~~~v~~PaLRa 302 (514)
T KOG0166|consen 233 DVVAPILPALLRLLHSTDEEVLT---DACWALSYLTDGSNEKIQMVIDAG-----VVPRLVDLLG-HSSPKVVTPALRA 302 (514)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHHhcCChHHHHHHHHcc-----chHHHHHHHc-CCCcccccHHHhh
Confidence 55888999998888777664432 1122222221 1233333333333 5678899887 5667676776663
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.013 Score=65.09 Aligned_cols=273 Identities=19% Similarity=0.241 Sum_probs=180.1
Q ss_pred HHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHh-ccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCC
Q 003365 336 IFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKI-GINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQ 414 (826)
Q Consensus 336 tFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl-~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~ 414 (826)
-|=|.++.|..+|-|-+--.-+..+..... ..+++ .+.|+.+..||+..+-.++ .++-.|+--+..||.+.+
T Consensus 211 pvLVsll~s~d~dvqyycttaisnIaVd~~----~Rk~Laqaep~lv~~Lv~Lmd~~s~---kvkcqA~lALrnlasdt~ 283 (550)
T KOG4224|consen 211 PVLVSLLKSGDLDVQYYCTTAISNIAVDRR----ARKILAQAEPKLVPALVDLMDDGSD---KVKCQAGLALRNLASDTE 283 (550)
T ss_pred hhhhhhhccCChhHHHHHHHHhhhhhhhHH----HHHHHHhcccchHHHHHHHHhCCCh---HHHHHHHHHHhhhcccch
Confidence 466778888888888777776666654332 22233 3578899999999886653 588888888889988644
Q ss_pred CceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhh
Q 003365 415 NSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKI 494 (826)
Q Consensus 415 nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKI 494 (826)
=-+-|++ .|++....-||+.+-- .+.+--.--+.+++-.+-|-.-|.++ |.+..+
T Consensus 284 Yq~eiv~-ag~lP~lv~Llqs~~~-----------------------plilasVaCIrnisihplNe~lI~da-gfl~pL 338 (550)
T KOG4224|consen 284 YQREIVE-AGSLPLLVELLQSPMG-----------------------PLILASVACIRNISIHPLNEVLIADA-GFLRPL 338 (550)
T ss_pred hhhHHHh-cCCchHHHHHHhCcch-----------------------hHHHHHHHHHhhcccccCcccceecc-cchhHH
Confidence 4444444 5788888888854321 22333444556777789999999988 888888
Q ss_pred hcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHH
Q 003365 495 IDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDIL 574 (826)
Q Consensus 495 I~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~IL 574 (826)
+.+.++.. + + ++-..+.-+|+.||... ..=++.|-+. .++.-+.+.+.|+. -+.|.---..+
T Consensus 339 VrlL~~~d-------n-E---eiqchAvstLrnLAass----e~n~~~i~es-gAi~kl~eL~lD~p--vsvqseisac~ 400 (550)
T KOG4224|consen 339 VRLLRAGD-------N-E---EIQCHAVSTLRNLAASS----EHNVSVIRES-GAIPKLIELLLDGP--VSVQSEISACI 400 (550)
T ss_pred HHHHhcCC-------c-h---hhhhhHHHHHHHHhhhh----hhhhHHHhhc-CchHHHHHHHhcCC--hhHHHHHHHHH
Confidence 87775532 1 1 22356778999998753 2334566665 78889999998876 56777778889
Q ss_pred HhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhh------hhHHHHHHhh
Q 003365 575 TSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKL------KVVDKLVETL 648 (826)
Q Consensus 575 t~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke------~vi~~Lv~mL 648 (826)
++||+.++.++..-.. +||..|+..- .+ ....++..|++||+.|+ +..+|-.++... ..-..|+..+
T Consensus 401 a~Lal~d~~k~~lld~-gi~~iLIp~t-~s----~s~Ev~gNaAaAL~Nls-s~v~~YarviEawd~P~~gi~g~L~Rfl 473 (550)
T KOG4224|consen 401 AQLALNDNDKEALLDS-GIIPILIPWT-GS----ESEEVRGNAAAALINLS-SDVEHYARVIEAWDHPVQGIQGRLARFL 473 (550)
T ss_pred HHHHhccccHHHHhhc-CCcceeeccc-Cc----cchhhcccHHHHHHhhh-hhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 9999999888754432 2334444422 11 12348889999999996 556777777555 3345555555
Q ss_pred cc--chhHHHHHHHHHHHh
Q 003365 649 AV--PLVRVNAARILRNLC 665 (826)
Q Consensus 649 ~d--~~~r~~AA~IL~nLC 665 (826)
.. --++-+|+--..+|.
T Consensus 474 ~S~~~tf~hia~wTI~qLl 492 (550)
T KOG4224|consen 474 ASHELTFRHIARWTIQQLL 492 (550)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 43 234445554444443
No 9
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.03 E-value=0.02 Score=67.30 Aligned_cols=235 Identities=16% Similarity=0.206 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHh
Q 003365 396 EEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLA 475 (826)
Q Consensus 396 ~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA 475 (826)
..+|..+-.++.+++......+....--|.+..+-..|+++ +--+..-.+.||..||
T Consensus 174 ~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-----------------------DiLvqlnalell~~La 230 (503)
T PF10508_consen 174 DIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-----------------------DILVQLNALELLSELA 230 (503)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-----------------------cHHHHHHHHHHHHHHH
Confidence 46777777777777764322322222223343333333331 1123455688999999
Q ss_pred hccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHH
Q 003365 476 RNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRD 555 (826)
Q Consensus 476 ~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~ 555 (826)
..++++.-+.+. |+++||+..+.... .+.......+-+-++....++.. .... -+..+|-++..|.+
T Consensus 231 ~~~~g~~yL~~~-gi~~~L~~~l~~~~------~dp~~~~~~l~g~~~f~g~la~~-~~~~-----v~~~~p~~~~~l~~ 297 (503)
T PF10508_consen 231 ETPHGLQYLEQQ-GIFDKLSNLLQDSE------EDPRLSSLLLPGRMKFFGNLARV-SPQE-----VLELYPAFLERLFS 297 (503)
T ss_pred cChhHHHHHHhC-CHHHHHHHHHhccc------cCCcccchhhhhHHHHHHHHHhc-ChHH-----HHHHHHHHHHHHHH
Confidence 988888888776 99999998764321 11112334555667777777775 2211 12345666767776
Q ss_pred HHccCCCChHHHHHHHHHHHhccCCccccccc-cchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHh-ccCcchHH
Q 003365 556 ILLHGEKHPLLQKLGIDILTSLALEEDATERI-GGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLA-LDSKSNCH 633 (826)
Q Consensus 556 IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~I-g~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa-~es~~Nc~ 633 (826)
.++. .++..+.-|++.+.+++--.+.++-+ -..+.-++..+..+.... ......+|..+=+||+.+- .+....+.
T Consensus 298 ~~~s--~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~-~~~~~~lk~r~l~al~~il~~~~~~~~~ 374 (503)
T PF10508_consen 298 MLES--QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI-KSGSTELKLRALHALASILTSGTDRQDN 374 (503)
T ss_pred HhCC--CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHhcCCCCchH
Confidence 6544 34778899999999998766666655 223334455555454432 1123348889999999772 22222233
Q ss_pred ---HHHhh-------hhHH-HHHHhhcc--chhHHHHHHHHHHHhhhcc
Q 003365 634 ---RILKL-------KVVD-KLVETLAV--PLVRVNAARILRNLCASSG 669 (826)
Q Consensus 634 ---~ILke-------~vi~-~Lv~mL~d--~~~r~~AA~IL~nLC~~s~ 669 (826)
.|.+. .-.. .+.+++.. ++.|+.|=++|+.||.|..
T Consensus 375 ~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~W 423 (503)
T PF10508_consen 375 DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPW 423 (503)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHH
Confidence 33333 2233 56666766 5899999999999999854
No 10
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.92 E-value=0.081 Score=62.29 Aligned_cols=227 Identities=19% Similarity=0.243 Sum_probs=149.4
Q ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEec-ccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcch
Q 003365 384 FVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAG-IPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWT 462 (826)
Q Consensus 384 Li~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~-iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~ 462 (826)
+++-|.-. ++|.=..+.+|+.++-+. +-... +|+..+.+-..|..+. -.
T Consensus 43 lf~~L~~~---~~e~v~~~~~iL~~~l~~----~~~~~l~~~~~~~L~~gL~h~~-----------------------~~ 92 (503)
T PF10508_consen 43 LFDCLNTS---NREQVELICDILKRLLSA----LSPDSLLPQYQPFLQRGLTHPS-----------------------PK 92 (503)
T ss_pred HHHHHhhc---ChHHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcCCC-----------------------HH
Confidence 56666522 344446777888887763 22222 3444444443333221 14
Q ss_pred hhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHH
Q 003365 463 FNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRRE 542 (826)
Q Consensus 463 L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~e 542 (826)
...+++..|.+++.+.+.+.++....++++-|+.-.. ++ -..+.+.+.++|++|++.+... ..
T Consensus 93 Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~-------~~-----d~~Va~~A~~~L~~l~~~~~~~-----~~ 155 (503)
T PF10508_consen 93 VRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR-------DP-----DLSVAKAAIKALKKLASHPEGL-----EQ 155 (503)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc-------CC-----cHHHHHHHHHHHHHHhCCchhH-----HH
Confidence 5678888899999988888888888899988885432 11 2355788999999999875432 23
Q ss_pred HhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhcc-CCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 003365 543 ISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLA-LEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEAL 621 (826)
Q Consensus 543 IS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA-~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeAL 621 (826)
+-++ ..+..|...+.. ++...|..+.+++.+++ ..+++.+.+.. .+++..++..+-+ ++-.++..|-|.|
T Consensus 156 l~~~-~~~~~L~~l~~~--~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~~-----dDiLvqlnalell 226 (503)
T PF10508_consen 156 LFDS-NLLSKLKSLMSQ--SSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELDS-----DDILVQLNALELL 226 (503)
T ss_pred HhCc-chHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhcC-----ccHHHHHHHHHHH
Confidence 3333 337777777654 24677888999999996 56666554433 4577777774422 3446889999999
Q ss_pred HHHhccCcchHHHHHhhhhHHHHHHhhcc---ch-----hHHHHHHHHHHHhhh
Q 003365 622 AMLALDSKSNCHRILKLKVVDKLVETLAV---PL-----VRVNAARILRNLCAS 667 (826)
Q Consensus 622 amLa~es~~Nc~~ILke~vi~~Lv~mL~d---~~-----~r~~AA~IL~nLC~~ 667 (826)
..|+. +++++.-+.+.+++++|..++.+ +. |....-+-..|+..+
T Consensus 227 ~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 227 SELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred HHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 99987 88999988888999999999865 22 222333556666665
No 11
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.56 E-value=0.044 Score=59.13 Aligned_cols=197 Identities=13% Similarity=0.184 Sum_probs=130.6
Q ss_pred cchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccch
Q 003365 423 PGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEE 502 (826)
Q Consensus 423 PGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~ 502 (826)
|+.++.+.++|+...+|. .....+.+|.+.|..+-|-..|.+. |.++.|..+++...
T Consensus 11 ~~~l~~Ll~lL~~t~dp~----------------------i~e~al~al~n~aaf~~nq~~Ir~~-Ggi~lI~~lL~~p~ 67 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPF----------------------IQEKALIALGNSAAFPFNQDIIRDL-GGISLIGSLLNDPN 67 (254)
T ss_pred HHHHHHHHHHHhcCCChH----------------------HHHHHHHHHHhhccChhHHHHHHHc-CCHHHHHHHcCCCC
Confidence 688999999999876542 1234566778888777665555554 88888887664421
Q ss_pred hhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCcc
Q 003365 503 SLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEED 582 (826)
Q Consensus 503 ~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~ 582 (826)
. .+-..+|+.|..|+....+.+ +|-.+ .-.=++++.- +..+.++|.-+..+|++|+++.+
T Consensus 68 ----------~--~vr~~AL~aL~Nls~~~en~~-----~Ik~~--i~~Vc~~~~s-~~lns~~Q~agLrlL~nLtv~~~ 127 (254)
T PF04826_consen 68 ----------P--SVREKALNALNNLSVNDENQE-----QIKMY--IPQVCEETVS-SPLNSEVQLAGLRLLTNLTVTND 127 (254)
T ss_pred ----------h--HHHHHHHHHHHhcCCChhhHH-----HHHHH--HHHHHHHHhc-CCCCCHHHHHHHHHHHccCCCcc
Confidence 1 222678999999977644433 34322 1111222322 23467889999999999999887
Q ss_pred ccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc---chhHHHHHH
Q 003365 583 ATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV---PLVRVNAAR 659 (826)
Q Consensus 583 ~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d---~~~r~~AA~ 659 (826)
....+. ..|..|+..+ ..+ + ...+..+-..|..|| +++.+...++..+++..++..+.. .+....+=.
T Consensus 128 ~~~~l~---~~i~~ll~LL-~~G-~---~~~k~~vLk~L~nLS-~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~ 198 (254)
T PF04826_consen 128 YHHMLA---NYIPDLLSLL-SSG-S---EKTKVQVLKVLVNLS-ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLT 198 (254)
T ss_pred hhhhHH---hhHHHHHHHH-HcC-C---hHHHHHHHHHHHHhc-cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHH
Confidence 765543 2456666543 332 1 236677888899995 889999999999889999987765 345667777
Q ss_pred HHHHHhhhcccc
Q 003365 660 ILRNLCASSGAD 671 (826)
Q Consensus 660 IL~nLC~~s~~e 671 (826)
+.+|+..+-+.+
T Consensus 199 ~~~ni~~~~~~~ 210 (254)
T PF04826_consen 199 FFENINENIKKE 210 (254)
T ss_pred HHHHHHHhhCcc
Confidence 778887655443
No 12
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.50 E-value=0.016 Score=52.78 Aligned_cols=111 Identities=25% Similarity=0.205 Sum_probs=83.6
Q ss_pred hhhhhHHHHHccCCCChHHHHHHHHHHHhccCC-ccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhc
Q 003365 548 FTISNIRDILLHGEKHPLLQKLGIDILTSLALE-EDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLAL 626 (826)
Q Consensus 548 f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D-~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~ 626 (826)
..+..|.+.|.++. .+++..|+..|.+++.+ ++..+.+-. .+++..|+..+-+ ++..++..|..+|..|+.
T Consensus 7 ~~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~-----~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 7 GGLPALVSLLSSSD--ENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKS-----EDEEVVKAALWALRNLAA 78 (120)
T ss_pred CChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhC-----CCHHHHHHHHHHHHHHcc
Confidence 35667777887664 88999999999999987 444444322 3566788885433 234588899999999987
Q ss_pred cCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhh
Q 003365 627 DSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCA 666 (826)
Q Consensus 627 es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~ 666 (826)
..+.+...+.+.++++.|+..|.+ .+.+..|..+|.|||.
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 776666666666889999998876 4788899999999984
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.24 Score=55.18 Aligned_cols=292 Identities=20% Similarity=0.248 Sum_probs=173.5
Q ss_pred CcccccccchhHHHHHhhc--CCCcchhhhhhHHHHHHhh-CcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHH
Q 003365 325 SIFDGLKMDMVIFGMELLD--SNSPDEQLIGARILRQFAM-SKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRS 401 (826)
Q Consensus 325 ~vf~~~~~~LVtFA~dll~--S~S~~~qL~GvriL~~~l~-~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~ 401 (826)
..|+..+|++| +++|. +++.|--+.|++-+..=.- .|.-|+.. -..++++-+.+-|.-.+. ++.+|+.
T Consensus 140 dl~da~g~~vv---v~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~-----m~~~il~Li~~~l~~~gk-~~~VRel 210 (461)
T KOG4199|consen 140 DLFDAEAMAVV---LKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLF-----MELKILELILQVLNREGK-TRTVREL 210 (461)
T ss_pred chhccccHHHH---HHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHH-----HHhhHHHHHHHHHcccCc-cHHHHHH
Confidence 46777788887 67764 5566667889887755432 23222222 223555666667766654 3789998
Q ss_pred HHHHHHHHhccCCCceEEec---------cc--chhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHH
Q 003365 402 AAEILSKLAGKKQNSLRVAG---------IP--GAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLI 470 (826)
Q Consensus 402 AArIva~LA~~~~nsLrv~~---------iP--Gaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~I 470 (826)
-+-+=+-+-.| ++||.- |- |.+--..-+|.++-+ | .-..--..-
T Consensus 211 ~~a~r~l~~dD---DiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d--------------p--------~~L~~l~~t 265 (461)
T KOG4199|consen 211 YDAIRALLTDD---DIRVVFGQAHGHARTIAKEGILTALTEALQAGID--------------P--------DSLVSLSTT 265 (461)
T ss_pred HHHHHHhcCCC---ceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC--------------c--------cHHHHHHHH
Confidence 88888888887 799863 00 001111111111111 1 112223456
Q ss_pred HHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHH-HHHHHHHHHHHHHhhCccchhhHHHHHHhhcchh
Q 003365 471 LKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQI-LTVRRSLQLVKMLASTTGITGEHLRREISEVVFT 549 (826)
Q Consensus 471 L~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~-~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~ 549 (826)
|+.||-+++-|.+|...-| |+.+...+. +++ +++. .++|..|.+|+.||.....-. .|.+.-.+
T Consensus 266 l~~lAVr~E~C~~I~e~GG-l~tl~~~i~-------d~n--~~~~r~l~k~~lslLralAG~DsvKs-----~IV~~gg~ 330 (461)
T KOG4199|consen 266 LKALAVRDEICKSIAESGG-LDTLLRCID-------DSN--EQGNRTLAKTCLSLLRALAGSDSVKS-----TIVEKGGL 330 (461)
T ss_pred HHHHHHHHHHHHHHHHccC-HHHHHHHHh-------hhc--hhhHHHHHHHHHHHHHHHhCCCchHH-----HHHHhcCh
Confidence 8999999999999998855 444443222 222 3444 488999999999997754333 34443222
Q ss_pred hhhHHHHHccCCCChHHHHHHHHHHHhccCC--ccccccc-cchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhc
Q 003365 550 ISNIRDILLHGEKHPLLQKLGIDILTSLALE--EDATERI-GGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLAL 626 (826)
Q Consensus 550 lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D--~~~re~I-g~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~ 626 (826)
=.-+.-.++|. .+|..-+.++-|++-|++- +.++.-| ++...++-.-|..|= ....++..|.-+.=+++.
T Consensus 331 ~~ii~l~~~h~-~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP------~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 331 DKIITLALRHS-DDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHP------VAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHHHcC-CChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHH
Confidence 22222334565 3466656688888877763 3333322 112333333444331 233567788999999999
Q ss_pred cCcchHHHHHhhhhHHHHHHhhc--cchhHHHHHHHHHHHhh--hcccchh
Q 003365 627 DSKSNCHRILKLKVVDKLVETLA--VPLVRVNAARILRNLCA--SSGADCF 673 (826)
Q Consensus 627 es~~Nc~~ILke~vi~~Lv~mL~--d~~~r~~AA~IL~nLC~--~s~~e~~ 673 (826)
.|.+||..+|. .-+++|+.+-. ++.++-.|-.-||-|-. |...+|.
T Consensus 404 rs~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~wt 453 (461)
T KOG4199|consen 404 RSAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREEWT 453 (461)
T ss_pred hhhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHHhc
Confidence 99999999886 44777776543 47788888888888854 3444443
No 14
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.31 E-value=0.015 Score=62.69 Aligned_cols=179 Identities=19% Similarity=0.244 Sum_probs=124.4
Q ss_pred cCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccc
Q 003365 376 INLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDH 455 (826)
Q Consensus 376 tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~ 455 (826)
-+++.+++|+..|.-+. |..|++.|.-++...|....|.--+.. -|++..|.++|+++..
T Consensus 9 l~~~~l~~Ll~lL~~t~--dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~----------------- 68 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTE--DPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNP----------------- 68 (254)
T ss_pred cCHHHHHHHHHHHhcCC--ChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCCh-----------------
Confidence 46788999999998664 578999999999999875333333333 5899999999998632
Q ss_pred cccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccch
Q 003365 456 ANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGIT 535 (826)
Q Consensus 456 ~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~ 535 (826)
+....++..|.+||.+.+|...|- .-|+++..-+-... + +.+.| -.+|++|..|+-+.-.
T Consensus 69 ------~vr~~AL~aL~Nls~~~en~~~Ik---~~i~~Vc~~~~s~~--l----ns~~Q----~agLrlL~nLtv~~~~- 128 (254)
T PF04826_consen 69 ------SVREKALNALNNLSVNDENQEQIK---MYIPQVCEETVSSP--L----NSEVQ----LAGLRLLTNLTVTNDY- 128 (254)
T ss_pred ------HHHHHHHHHHHhcCCChhhHHHHH---HHHHHHHHHHhcCC--C----CCHHH----HHHHHHHHccCCCcch-
Confidence 346678999999999999999884 35777776442211 1 11233 3689999999755322
Q ss_pred hhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcC
Q 003365 536 GEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKE 604 (826)
Q Consensus 536 G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~ 604 (826)
-..++ + .++.+-.+|..|. ...|..|..+|.||+-+.+...++-+.++ ...++..|-.+
T Consensus 129 ~~~l~----~---~i~~ll~LL~~G~--~~~k~~vLk~L~nLS~np~~~~~Ll~~q~-~~~~~~Lf~~~ 187 (254)
T PF04826_consen 129 HHMLA----N---YIPDLLSLLSSGS--EKTKVQVLKVLVNLSENPDMTRELLSAQV-LSSFLSLFNSS 187 (254)
T ss_pred hhhHH----h---hHHHHHHHHHcCC--hHHHHHHHHHHHHhccCHHHHHHHHhccc-hhHHHHHHccC
Confidence 22222 2 3455556666653 67899999999999998886555555554 47888866544
No 15
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.25 E-value=0.13 Score=57.25 Aligned_cols=277 Identities=16% Similarity=0.208 Sum_probs=163.6
Q ss_pred hcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEec
Q 003365 342 LDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAG 421 (826)
Q Consensus 342 l~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~ 421 (826)
|.||.-..|+.|+-=...+|.++...- +.+ ....+++.|+|+.++-. ...-...-||+++.++|....+.-+|+-
T Consensus 80 l~SdDie~q~qav~kFR~~LS~E~~PP--Iq~-VIdaGvVpRfvefm~~~--q~~mlqfEAaWalTNiaSGtt~QTkvVv 154 (526)
T COG5064 80 LFSDDIEQQLQAVYKFRKLLSKETSPP--IQP-VIDAGVVPRFVEFMDEI--QRDMLQFEAAWALTNIASGTTQQTKVVV 154 (526)
T ss_pred HhhhHHHHHHHHHHHHHHHhccccCCC--chh-HHhccccHHHHHHHHhc--chhHHHHHHHHHHhhhccCcccceEEEE
Confidence 345555556666655555554442110 000 11347889999998621 1223556799999999998877788776
Q ss_pred ccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccc
Q 003365 422 IPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAE 501 (826)
Q Consensus 422 iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~ 501 (826)
=-||....-+||.++++ +...|..=-|.+.|.|..-|+.+.=..|.+..+.++...+
T Consensus 155 d~~AVPlfiqlL~s~~~-----------------------~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss 211 (526)
T COG5064 155 DAGAVPLFIQLLSSTED-----------------------DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS 211 (526)
T ss_pred eCCchHHHHHHHcCchH-----------------------HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc
Confidence 56887777777776643 1233445578889999999998766667776666654321
Q ss_pred ----------hhhhcc----cCCChhHHHHHHHHHHHHHHHhhCccc-hhhHHH-------------HHHhhcchhhhhH
Q 003365 502 ----------ESLLRN----EHDTSSQILTVRRSLQLVKMLASTTGI-TGEHLR-------------REISEVVFTISNI 553 (826)
Q Consensus 502 ----------~~ll~~----~~~~~~~~~iv~~SLkvL~rLas~~Ge-~G~~LR-------------~eIS~~~f~lsNL 553 (826)
+..+.+ -+..+.|. .+..+|.+|.+|.-+-.. +=..-. -++-=++....-|
T Consensus 212 ~~~ismlRn~TWtLSNlcRGknP~P~w~-~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RL 290 (526)
T COG5064 212 AIHISMLRNATWTLSNLCRGKNPPPDWS-NISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRL 290 (526)
T ss_pred cchHHHHHHhHHHHHHhhCCCCCCCchH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHH
Confidence 122221 11123343 467889999998876432 111111 1111234455556
Q ss_pred HHHHccCCCChHHHHHHHHHHHhccCCccc-cccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchH
Q 003365 554 RDILLHGEKHPLLQKLGIDILTSLALEEDA-TERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNC 632 (826)
Q Consensus 554 ~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~-re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc 632 (826)
.|.|-|.. -..|-.|..-..|..-..+. .+-|-.++ +++.+..+ |.+ .+..+|+.|.-.+...+..+..-.
T Consensus 291 vElLs~~s--a~iqtPalR~vGNIVTG~D~QTqviI~~G-~L~a~~~l-Ls~----~ke~irKEaCWTiSNITAGnteqi 362 (526)
T COG5064 291 VELLSHES--AKIQTPALRSVGNIVTGSDDQTQVIINCG-ALKAFRSL-LSS----PKENIRKEACWTISNITAGNTEQI 362 (526)
T ss_pred HHHhcCcc--ccccCHHHHhhcCeeecCccceehheecc-cHHHHHHH-hcC----hhhhhhhhhheeecccccCCHHHH
Confidence 66666532 34456666666666543332 22332222 22333332 222 334699999999999988877777
Q ss_pred HHHHhhhhHHHHHHhhccchhHH
Q 003365 633 HRILKLKVVDKLVETLAVPLVRV 655 (826)
Q Consensus 633 ~~ILke~vi~~Lv~mL~d~~~r~ 655 (826)
.+++..+.+.-|+..|+..+|++
T Consensus 363 qavid~nliPpLi~lls~ae~k~ 385 (526)
T COG5064 363 QAVIDANLIPPLIHLLSSAEYKI 385 (526)
T ss_pred HHHHhcccchHHHHHHHHHHHHH
Confidence 77777788999999887655544
No 16
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.04 E-value=3.2 Score=48.22 Aligned_cols=252 Identities=15% Similarity=0.135 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHH
Q 003365 517 TVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKE 596 (826)
Q Consensus 517 iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~ 596 (826)
+...|.++|..|++..-+ . .+-+..++..+.|..+|... .+...+..|+..|..|.--++-|.-+-..+ .++.
T Consensus 117 i~~~a~~iLt~l~~~~~~-~----~~~~~l~~~~~~l~~~l~~~-~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~-~v~~ 189 (429)
T cd00256 117 IVHMSFSILAKLACFGLA-K----MEGSDLDYYFNWLKEQLNNI-TNNDYVQTAARCLQMLLRVDEYRFAFVLAD-GVPT 189 (429)
T ss_pred HHHHHHHHHHHHHhcCcc-c----cchhHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHhCCchHHHHHHHcc-CHHH
Confidence 567788899999876322 1 11123345667777777654 346677788999998887777887665544 3477
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhh-hhHHHHHHhhcc---chhHHHHHHHHHHHhhhcccch
Q 003365 597 LFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKL-KVVDKLVETLAV---PLVRVNAARILRNLCASSGADC 672 (826)
Q Consensus 597 L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke-~vi~~Lv~mL~d---~~~r~~AA~IL~nLC~~s~~e~ 672 (826)
|+++.-. . . ..-.+.-.+.=.+=.||-+.+ +...+.. ++|..|+.++.+ +|.--++-.+|+||...+.+..
T Consensus 190 L~~~L~~-~-~-~~~Ql~Y~~ll~lWlLSF~~~--~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~ 264 (429)
T cd00256 190 LVKLLSN-A-T-LGFQLQYQSIFCIWLLTFNPH--AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDRE 264 (429)
T ss_pred HHHHHhh-c-c-ccHHHHHHHHHHHHHHhccHH--HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Confidence 7775432 1 1 111222223323334554433 2223333 778888887775 4555577778888887543322
Q ss_pred h-hhh-hh-HHhHHHHHHHHHhch---hhhHHHHHHHhHH---H------------------HhhcCCc---hhh----H
Q 003365 673 F-NQL-RG-VTAAAPTILKAITSE---DYKLQEVMIGLAA---Q------------------VFRFMTR---EES----S 718 (826)
Q Consensus 673 ~-~~L-k~-l~~alp~VL~~I~~~---e~k~LE~ligLa~---q------------------Ic~~i~~---edf----a 718 (826)
. ... -. +...+|++++..... +..+.|.+--|.. + ..++-++ |.| +
T Consensus 265 ~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~ 344 (429)
T cd00256 265 VKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENA 344 (429)
T ss_pred hhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHH
Confidence 1 111 12 333566666554322 1111111111111 1 1122211 345 3
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCCCC-------------CCChHHHHHHH-----HHHHHHhcCCccHHHHHhhcHH
Q 003365 719 NIFERAGIMEIDLANTLVQILRKYQHPPI-------------KVPRIRRYAIE-----LAIWMMRDKATNVHIFKNLGLE 780 (826)
Q Consensus 719 ~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~-------------~~prIRR~~vE-----~~I~mm~~~~~y~~~f~e~~m~ 780 (826)
..|++.+ .+++|+|+++|+....|+. ++|+-|.++-+ .++.+|.|...-++.
T Consensus 345 ~kf~~~~---~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~------- 414 (429)
T cd00256 345 DRLNEKN---YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRY------- 414 (429)
T ss_pred HHHHhcc---hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHH-------
Confidence 4466543 5799999999976666754 56877766543 677888775544443
Q ss_pred HHHHHHHHHh
Q 003365 781 MVLESVIETT 790 (826)
Q Consensus 781 eaL~~v~~T~ 790 (826)
+||..|.+-+
T Consensus 415 eAL~avQklm 424 (429)
T cd00256 415 EALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHH
Confidence 5777666544
No 17
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.74 E-value=0.33 Score=44.02 Aligned_cols=110 Identities=23% Similarity=0.249 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhcc
Q 003365 592 GMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCASSG 669 (826)
Q Consensus 592 ~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~ 669 (826)
++|..|+. ++.+. ...++..|..+|+.++..++.++..+++.++++.|...|.| ++.+..|+..|.|||.+..
T Consensus 7 ~~i~~l~~-~l~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 7 GGLPALVS-LLSSS----DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred CChHHHHH-HHHcC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35566776 44432 24588899999999999989999999888999999999986 5778899999999997542
Q ss_pred cchhhhhhhHH-hHHHHHHHHHhchhhhHHHHHHHhHHHHh
Q 003365 670 ADCFNQLRGVT-AAAPTILKAITSEDYKLQEVMIGLAAQVF 709 (826)
Q Consensus 670 ~e~~~~Lk~l~-~alp~VL~~I~~~e~k~LE~ligLa~qIc 709 (826)
. .. ..... ..+|.+++.+.+.+.+..+..+.+-.++|
T Consensus 82 ~-~~--~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 D-NK--LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred H-HH--HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1 11 11122 24555555555555666666666555554
No 18
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=94.65 E-value=0.26 Score=59.62 Aligned_cols=151 Identities=17% Similarity=0.099 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHH
Q 003365 515 ILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGML 594 (826)
Q Consensus 515 ~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI 594 (826)
..+++.|.-+|+.|+...+.-..-+|+-|-.-.-.+.-|.+.|+.+. +..-+-|+..|+||+.|...++.|| ...|
T Consensus 533 ~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~--~~vv~s~a~~LrNls~d~rnk~lig--k~a~ 608 (717)
T KOG1048|consen 533 DNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDD--SDVVRSAAGALRNLSRDIRNKELIG--KYAI 608 (717)
T ss_pred hHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCC--chHHHHHHHHHhhhccCchhhhhhh--cchH
Confidence 34677888899999999888888888888555567778888887654 5566779999999999999999999 4667
Q ss_pred HHHHHHHhcCCCCC-chhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc---chhHHHHHHHHHHHhhhcc
Q 003365 595 KELFNILFKEGMPE-NQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV---PLVRVNAARILRNLCASSG 669 (826)
Q Consensus 595 ~~L~~iFl~~~~~~-~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d---~~~r~~AA~IL~nLC~~s~ 669 (826)
+.|++.|-...+.. ..+..-..+--.|..+..+|..|...++..+.+++|+.+... ++--.-|+.+|..|-.|..
T Consensus 609 ~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 609 PDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999887665322 122233357788899988999999999888788888887653 4555578888999988654
No 19
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.23 E-value=1.7 Score=50.50 Aligned_cols=179 Identities=18% Similarity=0.178 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhh
Q 003365 513 SQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGG 592 (826)
Q Consensus 513 ~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~ 592 (826)
.|..+++-++-+|-.||.... +--++|++ .++.=|...|+. ++-+|-.+++.-|..|.+=++.+...+.. +
T Consensus 275 KQeqLLrva~ylLlNlAed~~-~ElKMrrk-----niV~mLVKaLdr--~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~-~ 345 (791)
T KOG1222|consen 275 KQEQLLRVAVYLLLNLAEDIS-VELKMRRK-----NIVAMLVKALDR--SNSSLLTLVIKFLKKLSIFDENKIVMEQN-G 345 (791)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-HHHHHHHH-----hHHHHHHHHHcc--cchHHHHHHHHHHHHhhhhccchHHHHhc-c
Confidence 477788888888989886643 33444544 233345555543 34789999999999999866665554543 6
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhccchhHHHHHHHHHHHhhhcccch
Q 003365 593 MLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILRNLCASSGADC 672 (826)
Q Consensus 593 iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d~~~r~~AA~IL~nLC~~s~~e~ 672 (826)
+|.+|+..|-..+ ..+++..-.-|-.|+.++ .+.-.|.....+..|+..|.++.|.-+|-.+|-||.. ++-
T Consensus 346 iveKL~klfp~~h-----~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~---dD~ 416 (791)
T KOG1222|consen 346 IVEKLLKLFPIQH-----PDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSC---DDD 416 (791)
T ss_pred HHHHHHHhcCCCC-----HHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCcccchhhhhhhhhhcc---CcH
Confidence 8899999774432 236666666677887765 5666677778899999999999999999999999854 221
Q ss_pred hhhhhhHHhHHHHHHHHHhchhhh-HHHHHHHhHHHHh
Q 003365 673 FNQLRGVTAAAPTILKAITSEDYK-LQEVMIGLAAQVF 709 (826)
Q Consensus 673 ~~~Lk~l~~alp~VL~~I~~~e~k-~LE~ligLa~qIc 709 (826)
..-+=.-++.+|...+.++...|. .=-++|.|+-.+|
T Consensus 417 ~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ 454 (791)
T KOG1222|consen 417 AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLC 454 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 111112477888888888765543 2234566666665
No 20
>PRK09687 putative lyase; Provisional
Probab=93.10 E-value=7.1 Score=42.78 Aligned_cols=93 Identities=16% Similarity=0.096 Sum_probs=66.2
Q ss_pred cchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHh
Q 003365 546 VVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLA 625 (826)
Q Consensus 546 ~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa 625 (826)
++.++.-|...|.|.. +.++.-|+.-|.++..+. +.++..|+...-+ .+..+|..|..+|+.+-
T Consensus 157 ~~~ai~~L~~~L~d~~--~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~D-----~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 157 DEAAIPLLINLLKDPN--GDVRNWAAFALNSNKYDN---------PDIREAFVAMLQD-----KNEEIRIEAIIGLALRK 220 (280)
T ss_pred CHHHHHHHHHHhcCCC--HHHHHHHHHHHhcCCCCC---------HHHHHHHHHHhcC-----CChHHHHHHHHHHHccC
Confidence 4567888888888653 689999999999883322 2344556665422 23458999999998863
Q ss_pred ccCcchHHHHHhhhhHHHHHHhhccchhHHHHHHHHHHHh
Q 003365 626 LDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILRNLC 665 (826)
Q Consensus 626 ~es~~Nc~~ILke~vi~~Lv~mL~d~~~r~~AA~IL~nLC 665 (826)
.+ .+++.|+..|.++..++-|+.-|.++-
T Consensus 221 ~~-----------~av~~Li~~L~~~~~~~~a~~ALg~ig 249 (280)
T PRK09687 221 DK-----------RVLSVLIKELKKGTVGDLIIEAAGELG 249 (280)
T ss_pred Ch-----------hHHHHHHHHHcCCchHHHHHHHHHhcC
Confidence 22 678999999998878777777776663
No 21
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.06 E-value=16 Score=42.29 Aligned_cols=256 Identities=14% Similarity=0.157 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhH
Q 003365 514 QILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGM 593 (826)
Q Consensus 514 ~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~i 593 (826)
+.-++..+-.++..|+.. |..-. +-++--.-.++|.++|+.+.. .+-..-|+.+|..+.--++-|-.+-...++
T Consensus 127 d~~iv~~~~~Ils~la~~-g~~~~----~~~e~~~~~~~l~~~l~~~~~-~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~ 200 (442)
T KOG2759|consen 127 DTFIVEMSFRILSKLACF-GNCKM----ELSELDVYKGFLKEQLQSSTN-NDYIQFAARCLQTLLRVDEYRYAFVIADGV 200 (442)
T ss_pred ChHHHHHHHHHHHHHHHh-ccccc----cchHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHhcCcchhheeeecCcc
Confidence 345666688888888877 43221 112233566788888876543 333445888888887666666655444333
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc---chhHHHHHHHHHHHhhhccc
Q 003365 594 LKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV---PLVRVNAARILRNLCASSGA 670 (826)
Q Consensus 594 I~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d---~~~r~~AA~IL~nLC~~s~~ 670 (826)
..|+.+..++. .. -.+.-.--...=.|+ =++.-|..+.+-+.++.|++++.+ ++..-+.-.|++|+|.-..+
T Consensus 201 -~~l~~~l~s~~-~~--~QlQYqsifciWlLt-Fn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~ 275 (442)
T KOG2759|consen 201 -SLLIRILASTK-CG--FQLQYQSIFCIWLLT-FNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPD 275 (442)
T ss_pred -hhhHHHHhccC-cc--hhHHHHHHHHHHHhh-cCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 45555554221 11 112222222222333 345555555333788888888875 34333445578898874432
Q ss_pred -chhhh--hhhHHhHHHHHHHHHhc-----hh----hhHHHHHHHhHHHHh---------------hcCCc---hhh---
Q 003365 671 -DCFNQ--LRGVTAAAPTILKAITS-----ED----YKLQEVMIGLAAQVF---------------RFMTR---EES--- 717 (826)
Q Consensus 671 -e~~~~--Lk~l~~alp~VL~~I~~-----~e----~k~LE~ligLa~qIc---------------~~i~~---edf--- 717 (826)
++..+ +.-+...+|+-++-.-. ++ =+-|+-=+.-++|=. .+-++ ++|
T Consensus 276 ~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~e 355 (442)
T KOG2759|consen 276 RETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRE 355 (442)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHH
Confidence 22111 00011112222211110 00 011112222222211 22221 455
Q ss_pred -HHHHHhcCCChHHHHHHHHHHHhhcCCCCC-------------CCChHHHHHHH-----HHHHHHhcCCccHHHHHhhc
Q 003365 718 -SNIFERAGIMEIDLANTLVQILRKYQHPPI-------------KVPRIRRYAIE-----LAIWMMRDKATNVHIFKNLG 778 (826)
Q Consensus 718 -a~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~-------------~~prIRR~~vE-----~~I~mm~~~~~y~~~f~e~~ 778 (826)
++.|++.+ .+++|.|+++|+.+..|.. ++|+.|.++.+ .++-+|.|...-++.
T Consensus 356 Na~rlnenn---yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry----- 427 (442)
T KOG2759|consen 356 NADRLNENN---YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRY----- 427 (442)
T ss_pred hHHHHhhcc---HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHH-----
Confidence 44565533 6899999999999999965 67999998875 567777776555554
Q ss_pred HHHHHHHHHHHh
Q 003365 779 LEMVLESVIETT 790 (826)
Q Consensus 779 m~eaL~~v~~T~ 790 (826)
+||..|..-+
T Consensus 428 --~ALlavQ~lm 437 (442)
T KOG2759|consen 428 --HALLAVQKLM 437 (442)
T ss_pred --HHHHHHHHHH
Confidence 5676666544
No 22
>PF05536 Neurochondrin: Neurochondrin
Probab=92.78 E-value=12 Score=45.06 Aligned_cols=226 Identities=19% Similarity=0.176 Sum_probs=133.0
Q ss_pred HHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccC-----CCChHHHHHHHHHHHhccCCccccccccchhhHHH
Q 003365 521 SLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHG-----EKHPLLQKLGIDILTSLALEEDATERIGGTGGMLK 595 (826)
Q Consensus 521 SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~-----~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~ 595 (826)
+|-++.++... ++.-..-|+.|.+... ..=|.+.|+.+ ....+.+.+|+-||..++.|++...+ -.+-.-|.
T Consensus 25 gL~lvtk~~~~-~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~-~~~~~~IP 101 (543)
T PF05536_consen 25 GLLLVTKLLDA-DDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASS-PQMVSRIP 101 (543)
T ss_pred HHHHHHHcCCC-chhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcC-HHHHHHHH
Confidence 45556666553 3333333444554432 24455555532 13467899999999999998877533 22234457
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc-chhHHHHHHHHHHHhhhcccchh-
Q 003365 596 ELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV-PLVRVNAARILRNLCASSGADCF- 673 (826)
Q Consensus 596 ~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d-~~~r~~AA~IL~nLC~~s~~e~~- 673 (826)
.|+.+..... +......|=|-|..++ .++.-..++++.+.+..|..++.+ +...-.|..||.|||...+.+..
T Consensus 102 ~Lle~l~~~s----~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~Lls~~~~~~~~ 176 (543)
T PF05536_consen 102 LLLEILSSSS----DLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLNLLSRLGQKSWA 176 (543)
T ss_pred HHHHHHHcCC----chhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhhhh
Confidence 7777666553 1234456777788887 777888999988899999998766 56688999999999986554433
Q ss_pred hhhhhHHhHHHHHHHHHhchhh----hHHHHHHHhHHHHhhcCCchhh--HHHHHhcCCChHHHHHHHHHHHhhcCCCCC
Q 003365 674 NQLRGVTAAAPTILKAITSEDY----KLQEVMIGLAAQVFRFMTREES--SNIFERAGIMEIDLANTLVQILRKYQHPPI 747 (826)
Q Consensus 674 ~~Lk~l~~alp~VL~~I~~~e~----k~LE~ligLa~qIc~~i~~edf--a~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~ 747 (826)
.+-+.+...++++=+..-..+| +.++.+-.+-. ..++ .+...+..- ...+.+-|.+||. ++|+
T Consensus 177 ~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~-------~~~~~~~~~~~~~~W-~~~l~~gl~~iL~--sr~~- 245 (543)
T PF05536_consen 177 EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLP-------RSPILPLESPPSPKW-LSDLRKGLRDILQ--SRLT- 245 (543)
T ss_pred hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcC-------cCCccccccCChhhh-HHHHHHHHHHHHh--cCCC-
Confidence 2233344444443333322222 22332222221 1111 010111111 2357777888886 4554
Q ss_pred CCChHHHHHHHHHHHHHhcC
Q 003365 748 KVPRIRRYAIELAIWMMRDK 767 (826)
Q Consensus 748 ~~prIRR~~vE~~I~mm~~~ 767 (826)
|..|-.++.++-.|++.-
T Consensus 246 --~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 246 --PSQRDPALNLAASLLDLL 263 (543)
T ss_pred --HHHHHHHHHHHHHHHHHh
Confidence 667888888888888764
No 23
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=92.71 E-value=3 Score=46.83 Aligned_cols=172 Identities=24% Similarity=0.279 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHH
Q 003365 564 PLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDK 643 (826)
Q Consensus 564 ~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~ 643 (826)
..||--|++.|||.|-......++.--.+-+..+++.+.+. .+.++..|--||...|-+|+.....+|.-++++-
T Consensus 129 ~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~-----~~~V~eQavWALGNiAGDS~~~RD~vL~~galep 203 (526)
T COG5064 129 DMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-----EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEP 203 (526)
T ss_pred hHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc-----hHHHHHHHHHHhccccCCchhHHHHHHhcCchHH
Confidence 44666799999999965543332221122234444433332 2447788999999999888887777777788888
Q ss_pred HHHhhccch----hHHHHHHHHHHHhhhcc--cchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCC-chh
Q 003365 644 LVETLAVPL----VRVNAARILRNLCASSG--ADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMT-REE 716 (826)
Q Consensus 644 Lv~mL~d~~----~r~~AA~IL~nLC~~s~--~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~-~ed 716 (826)
+.++|...+ .--.|-=.|-|||.--. +++ ..++.++|..-+-|...+- |+++--.=.|.-+.+ |.+
T Consensus 204 lL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w----~~isqalpiL~KLiys~D~---evlvDA~WAiSYlsDg~~E 276 (526)
T COG5064 204 LLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW----SNISQALPILAKLIYSRDP---EVLVDACWAISYLSDGPNE 276 (526)
T ss_pred HHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch----HHHHHHHHHHHHHHhhcCH---HHHHHHHHHHHHhccCcHH
Confidence 888776532 23367778999997433 333 2388999998888877654 333333333332221 233
Q ss_pred hHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHH
Q 003365 717 SSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIR 753 (826)
Q Consensus 717 fa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIR 753 (826)
=.+++-+.|+. +||++.|. |......-|-+|
T Consensus 277 ~i~avld~g~~-----~RLvElLs-~~sa~iqtPalR 307 (526)
T COG5064 277 KIQAVLDVGIP-----GRLVELLS-HESAKIQTPALR 307 (526)
T ss_pred HHHHHHhcCCc-----HHHHHHhc-CccccccCHHHH
Confidence 33444445655 45777665 322223345554
No 24
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=92.00 E-value=13 Score=45.66 Aligned_cols=388 Identities=20% Similarity=0.209 Sum_probs=206.8
Q ss_pred HHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccC---C
Q 003365 338 GMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKK---Q 414 (826)
Q Consensus 338 A~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~---~ 414 (826)
|+..|.|..+.-|..++--+.-+-..+ .-.++-..+.+-|.+||..|+-.. .++...|..-+.+|.=++ .
T Consensus 238 ~i~mL~~q~~~~qsnaaaylQHlcfgd----~~ik~~vrqlggI~kLv~Ll~~~~---~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 238 VISMLMSQDPSVQSNAAAYLQHLCFGD----NKIKSRVRQLGGIPKLVALLDHRN---DEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred HHHHHhccChhhhHHHHHHHHHHHhhh----HHHHHHHHHhccHHHHHHHhcCCc---HHHHHHHHHHHHhhhcccCCcc
Confidence 555566666666766655544444322 222223334567888999888655 689999999999996543 3
Q ss_pred CceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhcccccccccccc--Cchh
Q 003365 415 NSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTR--GLLP 492 (826)
Q Consensus 415 nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~--gLIs 492 (826)
|.|-|...+|.-..+ ++|...++. ++..+---||=+|...+.-|..|.... =|=.
T Consensus 311 NKlai~~~~Gv~~l~-~~Lr~t~D~----------------------ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~ 367 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLV-RLLRHTQDD----------------------EVRELITGILWNLSSNDALKMLIITSALSTLTD 367 (717)
T ss_pred cchhhhhcCChHHHH-HHHHhhcch----------------------HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 677777766655544 445533210 122222346667766544455543321 0111
Q ss_pred hhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHcc----CCCChHHHH
Q 003365 493 KIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLH----GEKHPLLQK 568 (826)
Q Consensus 493 KII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~----~~~~~eLq~ 568 (826)
-+|- +.+..--.+....-.+..++..+--.|+.+.|++ ..=|+++.+...+|..|.-.+++ ..++..-=+
T Consensus 368 ~vI~--P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~----~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VE 441 (717)
T KOG1048|consen 368 NVII--PHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAG----QEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVE 441 (717)
T ss_pred hhcc--cccccCCCCcccccccceeeehhhhhhccccchh----HHHHHHHhhccchHHHHHHHHHHHHHhccccchhHH
Confidence 1121 1110000000001245777888888888888773 33467777777777777777662 344555667
Q ss_pred HHHHHHHhcc--CCcccc--------------------ccccchh-------------------------------hHHH
Q 003365 569 LGIDILTSLA--LEEDAT--------------------ERIGGTG-------------------------------GMLK 595 (826)
Q Consensus 569 lAi~ILt~LA--~D~~~r--------------------e~Ig~~~-------------------------------~iI~ 595 (826)
.++.||+||. ++++.. +.+|.-+ .||+
T Consensus 442 NcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr 521 (717)
T KOG1048|consen 442 NCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVR 521 (717)
T ss_pred HHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHH
Confidence 8899999884 231110 1111100 1111
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHHHhcc----CcchHHHH-HhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhc
Q 003365 596 ELFNILFKEGMPENQNCVRIAAGEALAMLALD----SKSNCHRI-LKLKVVDKLVETLAV--PLVRVNAARILRNLCASS 668 (826)
Q Consensus 596 ~L~~iFl~~~~~~~~~~lr~~AGeALamLa~e----s~~Nc~~I-Lke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s 668 (826)
.=+. ++.. ..+...+. .+.-||.+|+.. +..-|..+ .+|..+..|+++|+. +..-..+|..|+||..+.
T Consensus 522 ~Yl~-Ll~~--s~n~~TlE-asaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 522 PYLL-LLAL--SKNDNTLE-ASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred HHHH-HHHH--hcchHHHH-HhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 1000 1110 01112233 455678888754 34445555 677888999998874 566678999999997643
Q ss_pred ccchhhhhhhHHhHHHHHHHHHhchhh--hHHH-HHHHhHHHHhhcC--CchhhHHHHHhcCCChHHHHHHHHHHHhhcC
Q 003365 669 GADCFNQLRGVTAAAPTILKAITSEDY--KLQE-VMIGLAAQVFRFM--TREESSNIFERAGIMEIDLANTLVQILRKYQ 743 (826)
Q Consensus 669 ~~e~~~~Lk~l~~alp~VL~~I~~~e~--k~LE-~ligLa~qIc~~i--~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~ 743 (826)
.- .++-. +.++|.+.+.+-+..+ ...| .+....-.+.+++ +++.-.+.|+-.| +.||+-|...
T Consensus 598 rn---k~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g------~~kL~~I~~s-- 665 (717)
T KOG1048|consen 598 RN---KELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKG------IPKLRLISKS-- 665 (717)
T ss_pred hh---hhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccC------hHHHHHHhcc--
Confidence 21 11111 6788888877765444 1222 2222222222333 1112223334334 3567777664
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCccHHHHHhhcHHH
Q 003365 744 HPPIKVPRIRRYAIELAIWMMRDKATNVHIFKNLGLEM 781 (826)
Q Consensus 744 ~Pt~~~prIRR~~vE~~I~mm~~~~~y~~~f~e~~m~e 781 (826)
.+.|+--|.+....-.|=.+ -.+-..|++.|..+
T Consensus 666 ---~~S~k~~kaAs~vL~~lW~y-~eLh~~~kk~g~~q 699 (717)
T KOG1048|consen 666 ---QHSPKEFKAASSVLDVLWQY-KELHFKLKKKGFKQ 699 (717)
T ss_pred ---cCCHHHHHHHHHHHHHHHHH-HHHhhhHhhhhhHH
Confidence 56778788887765555444 23344455555443
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=20 Score=45.79 Aligned_cols=93 Identities=24% Similarity=0.260 Sum_probs=56.5
Q ss_pred chhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccch-hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHh
Q 003365 547 VFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGT-GGMLKELFNILFKEGMPENQNCVRIAAGEALAMLA 625 (826)
Q Consensus 547 ~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~-~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa 625 (826)
|.++.+|-.-.. ..++.+|+.|.-||+++.-.- |.. ...+..+...|... +++.++.+|..|.+|+...+
T Consensus 117 Pell~~L~q~~~--S~~~~~rE~al~il~s~~~~~------~~~~~~~~~~l~~lf~q~-~~d~s~~vr~~a~rA~~a~~ 187 (1075)
T KOG2171|consen 117 PELLQFLFQSTK--SPNPSLRESALLILSSLPETF------GNTLQPHLDDLLRLFSQT-MTDPSSPVRVAAVRALGAFA 187 (1075)
T ss_pred HHHHHHHHHHhc--CCCcchhHHHHHHHHhhhhhh------ccccchhHHHHHHHHHHh-ccCCcchHHHHHHHHHHHHH
Confidence 455555443222 346889999999999996433 333 33556777767665 24444559999999998777
Q ss_pred ccCcchHHHHHhh-hhHHHHHHhh
Q 003365 626 LDSKSNCHRILKL-KVVDKLVETL 648 (826)
Q Consensus 626 ~es~~Nc~~ILke-~vi~~Lv~mL 648 (826)
...++|-..-=+- ..+..++..+
T Consensus 188 ~~~~~~~~~~~~~~~llP~~l~vl 211 (1075)
T KOG2171|consen 188 EYLENNKSEVDKFRDLLPSLLNVL 211 (1075)
T ss_pred HHhccchHHHHHHHHHhHHHHHHh
Confidence 6665554333222 4445444443
No 26
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.84 E-value=72 Score=41.12 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=50.5
Q ss_pred cchhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 003365 332 MDMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAG 411 (826)
Q Consensus 332 ~~LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~ 411 (826)
-+|..|=.++++|..+..+=++++||.++...-.... ...-+.+.+|+.. +-++|.+. +|-.|+|-+..++.
T Consensus 117 Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~------~~~~~~l~~lf~q-~~~d~s~~-vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 117 PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL------QPHLDDLLRLFSQ-TMTDPSSP-VRVAAVRALGAFAE 188 (1075)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc------chhHHHHHHHHHH-hccCCcch-HHHHHHHHHHHHHH
Confidence 3689999999999999999999999999986321100 0111234444432 34566666 99999999999885
No 27
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.74 E-value=14 Score=40.78 Aligned_cols=219 Identities=18% Similarity=0.167 Sum_probs=125.5
Q ss_pred chhHHHHHhhcCC-Cc-chhhhhhHHHHHHhhCcCCchHHHHHhcc--CHHHHHHHHHHhCCCCcccHHHHHHHHHHHHH
Q 003365 333 DMVIFGMELLDSN-SP-DEQLIGARILRQFAMSKRFSDDTLQKIGI--NLSVIERFVEMLNWKDPQEEEIRRSAAEILSK 408 (826)
Q Consensus 333 ~LVtFA~dll~S~-S~-~~qL~GvriL~~~l~~~~~~~~~L~kl~t--S~~~i~rLi~ML~wts~~d~eiR~~AArIva~ 408 (826)
..++.-+.+|+.- +. +-.-|=+.+++-++...+.+.+++..... .......++.+|+-. |.-|...|+++++.
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~---D~~i~~~a~~iLt~ 131 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN---DSFIQLKAAFILTS 131 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S---SHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC---CHHHHHHHHHHHHH
Confidence 3344444555444 22 33456677888888888888888776554 334788888876633 78999999999999
Q ss_pred HhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhcccccccccccc
Q 003365 409 LAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTR 488 (826)
Q Consensus 409 LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~ 488 (826)
|+... .... + . .. .
T Consensus 132 Ll~~~-----------------------~~~~-------~-------------~-~~----------------------~ 145 (312)
T PF03224_consen 132 LLSQG-----------------------PKRS-------E-------------K-LV----------------------K 145 (312)
T ss_dssp HHTST-----------------------TT---------H-------------H-HH----------------------H
T ss_pred HHHcC-----------------------Cccc-------c-------------c-hH----------------------H
Confidence 99630 0000 0 0 00 1
Q ss_pred CchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHH-----ccCCCC
Q 003365 489 GLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDIL-----LHGEKH 563 (826)
Q Consensus 489 gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL-----~~~~~~ 563 (826)
+.+++++.+... .+++ .-......+++.++.|... +..|+-+.+ ...+..|..|| ..+..+
T Consensus 146 ~~l~~ll~~L~~---~l~~-----~~~~~~~~av~~L~~LL~~-----~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~ 211 (312)
T PF03224_consen 146 EALPKLLQWLSS---QLSS-----SDSELQYIAVQCLQNLLRS-----KEYRQVFWK-SNGVSPLFDILRKQATNSNSSG 211 (312)
T ss_dssp HHHHHHHHHHH----TT-H-----HHH---HHHHHHHHHHHTS-----HHHHHHHHT-HHHHHHHHHHHH---------H
T ss_pred HHHHHHHHHHHH---hhcC-----CCcchHHHHHHHHHHHhCc-----chhHHHHHh-cCcHHHHHHHHHhhcccCCCCc
Confidence 233333333211 0111 1112235677788888776 677888877 58888899999 345566
Q ss_pred hHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcc-hHHHHHhhh
Q 003365 564 PLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKS-NCHRILKLK 639 (826)
Q Consensus 564 ~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~-Nc~~ILke~ 639 (826)
.+++=.+.-++=.|..+++.-+.+-... +|..|+++.-... +..-+| .+=-+|-+|...++. ++..|+..+
T Consensus 212 ~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L~~i~~~~~---KEKvvR-v~la~l~Nl~~~~~~~~~~~mv~~~ 283 (312)
T PF03224_consen 212 IQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLLADILKDSI---KEKVVR-VSLAILRNLLSKAPKSNIELMVLCG 283 (312)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHHHHHHHH-----SHHHHH-HHHHHHHHTTSSSSTTHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHHHHHHHhcc---cchHHH-HHHHHHHHHHhccHHHHHHHHHHcc
Confidence 8888889999999999999877765555 8899998765442 222344 455566666655444 556564433
No 28
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=88.03 E-value=8.5 Score=44.10 Aligned_cols=139 Identities=18% Similarity=0.295 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCC-CChHHHHHHHHHHHhccCCccccccccchh
Q 003365 513 SQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGE-KHPLLQKLGIDILTSLALEEDATERIGGTG 591 (826)
Q Consensus 513 ~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~-~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~ 591 (826)
.|..++|.-||.+.++..-.|.++..+|.=|- +..++..|..|+++.+ -.+-+--+|+.|++.+--++.|.-.+-.-.
T Consensus 72 ~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D-~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~ 150 (379)
T PF06025_consen 72 QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLID-SSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEA 150 (379)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccccc-hhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHc
Confidence 67889999999999999834668889988554 5689999999999874 468899999999999988888876555556
Q ss_pred hHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhccchhH
Q 003365 592 GMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVR 654 (826)
Q Consensus 592 ~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d~~~r 654 (826)
+++..+++.+...++..+.+.+. .--+++-.|++.+ .-...+.+.+.++.+.+++.+++|-
T Consensus 151 Gl~~~~L~~i~~~~i~~s~e~l~-~lP~~l~AicLN~-~Gl~~~~~~~~l~~~f~if~s~~~~ 211 (379)
T PF06025_consen 151 GLIDAFLDAITAKGILPSSEVLT-SLPNVLSAICLNN-RGLEKVKSSNPLDKLFEIFTSPDYV 211 (379)
T ss_pred CChHHHHHHHhccCCCCcHHHHH-HHHHHHhHHhcCH-HHHHHHHhcChHHHHHHHhCCHHHH
Confidence 77888888887443333322222 2345565565432 2223332337888999988887664
No 29
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=86.84 E-value=1.1 Score=34.34 Aligned_cols=39 Identities=36% Similarity=0.359 Sum_probs=34.1
Q ss_pred CcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhh
Q 003365 628 SKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCA 666 (826)
Q Consensus 628 s~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~ 666 (826)
|++|+..|...++++.|+.+|++ ++.+..|+.-|+|||.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 56788999888999999999986 5778899999999984
No 30
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=85.73 E-value=8.7 Score=38.69 Aligned_cols=144 Identities=17% Similarity=0.222 Sum_probs=84.6
Q ss_pred hhcchhhhhHHHHHccCCCChHHHHHHHHHHHhc-cCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q 003365 544 SEVVFTISNIRDILLHGEKHPLLQKLGIDILTSL-ALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALA 622 (826)
Q Consensus 544 S~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~L-A~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALa 622 (826)
.++|.++.-|-.||+.+ .++.+++-|+..|..| |+|....+.+-.... .....+ .-....-..+.
T Consensus 6 ~~yP~LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----------~~~~~~--~~~~~~~~~l~ 71 (160)
T PF11865_consen 6 LDYPELLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKSLD-----------SKSSEN--SNDESTDISLP 71 (160)
T ss_pred HHhHHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhcccccCC-----------cccccc--ccccchhhHHh
Confidence 36899999999999988 4599999999999999 999876554332211 000000 00011112222
Q ss_pred HHhc--cCcchHHHHHhhhhHHHHHHhhccc---hhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhH
Q 003365 623 MLAL--DSKSNCHRILKLKVVDKLVETLAVP---LVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKL 697 (826)
Q Consensus 623 mLa~--es~~Nc~~ILke~vi~~Lv~mL~d~---~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~ 697 (826)
+... .+++-+.. .++..|..+|.|+ .+...+..-+-+.+.+.+..+ ...+...+|.++..|.+.+...
T Consensus 72 ~~~~~~~~ee~y~~----vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c---v~~L~~viP~~l~~i~~~~~~~ 144 (160)
T PF11865_consen 72 MMGISPSSEEYYPT----VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC---VPYLPQVIPIFLRVIRTCPDSL 144 (160)
T ss_pred hccCCCchHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc---hhHHHHHhHHHHHHHHhCCHHH
Confidence 2211 11111111 4678888899884 333344444444443333333 4458888999999988777788
Q ss_pred HHHHHHhHHHH
Q 003365 698 QEVMIGLAAQV 708 (826)
Q Consensus 698 LE~ligLa~qI 708 (826)
+|.++.--+.+
T Consensus 145 ~e~~~~qL~~l 155 (160)
T PF11865_consen 145 REFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHH
Confidence 88776544433
No 31
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.17 E-value=9.7 Score=46.91 Aligned_cols=240 Identities=18% Similarity=0.178 Sum_probs=140.0
Q ss_pred hccCHHHHHHHHHHhC-CCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchh-hhh
Q 003365 374 IGINLSVIERFVEMLN-WKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGE-KKI 451 (826)
Q Consensus 374 l~tS~~~i~rLi~ML~-wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~-~~~ 451 (826)
+-+-..||++|++-+- .|=+ +=|+-|++-+.-+|++ .|.+=.-.+|..+---|.++.......-..-+ --+
T Consensus 17 ~~s~aETI~kLcDRvessTL~---eDRR~A~rgLKa~srk----YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~i 89 (970)
T KOG0946|consen 17 QQSAAETIEKLCDRVESSTLL---EDRRDAVRGLKAFSRK----YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLI 89 (970)
T ss_pred cccHHhHHHHHHHHHhhccch---hhHHHHHHHHHHHHHH----HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 3445689999999884 4444 4588999999999987 77655445666555556666432100000000 000
Q ss_pred --hccc---cccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHH
Q 003365 452 --ILDH---ANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVK 526 (826)
Q Consensus 452 --~~~~---~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~ 526 (826)
+.++ -..+..+---+|+.|-+-+-..+ |.|.-.+.+...- +.| +=..+.|++.
T Consensus 90 l~~~dd~~~v~dds~qsdd~g~~iae~fik~q----------d~I~lll~~~e~~-----DF~-------VR~~aIqLls 147 (970)
T KOG0946|consen 90 LTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQ----------DNITLLLQSLEEF-----DFH-------VRLYAIQLLS 147 (970)
T ss_pred HHhcCcchhhcccchhhhHHHHHHHHHHHcCc----------hhHHHHHHHHHhh-----chh-------hhhHHHHHHH
Confidence 0000 00000022335666666654333 3444444433110 111 1135888998
Q ss_pred HHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCC
Q 003365 527 MLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGM 606 (826)
Q Consensus 527 rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~ 606 (826)
-|.++ -|..++.-|-.+|-.++.|...|+|+. .-.+--|+=.|..|.=|-..-+.|..-+.+..+|++|.-..+
T Consensus 148 alls~---r~~e~q~~ll~~P~gIS~lmdlL~Dsr--E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG- 221 (970)
T KOG0946|consen 148 ALLSC---RPTELQDALLVSPMGISKLMDLLRDSR--EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG- 221 (970)
T ss_pred HHHhc---CCHHHHHHHHHCchhHHHHHHHHhhhh--hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC-
Confidence 88888 468999999999999999999999875 456666777777777677766777777777888888765543
Q ss_pred CCchhhHHHHHHHHHHHHhccCcchHHHHHhh-hhHHHHHHhhc
Q 003365 607 PENQNCVRIAAGEALAMLALDSKSNCHRILKL-KVVDKLVETLA 649 (826)
Q Consensus 607 ~~~~~~lr~~AGeALamLa~es~~Nc~~ILke-~vi~~Lv~mL~ 649 (826)
..+..-+-..+---|-.|--.+.+|=. +++| ..|.+|..+|+
T Consensus 222 g~dGgIVveDCL~ll~NLLK~N~SNQ~-~FrE~~~i~rL~klL~ 264 (970)
T KOG0946|consen 222 GLDGGIVVEDCLILLNNLLKNNISNQN-FFREGSYIPRLLKLLS 264 (970)
T ss_pred CCCCcchHHHHHHHHHHHHhhCcchhh-HHhccccHHHHHhhcC
Confidence 222111111122223445444555544 5566 78888887775
No 32
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.13 E-value=11 Score=38.95 Aligned_cols=197 Identities=20% Similarity=0.151 Sum_probs=98.3
Q ss_pred cCcchhhhhHHHHHHHHhhcc---cccccccc-ccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCcc
Q 003365 458 YGFWTFNHLGLLILKKLARNH---DNCGKIGN-TRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTG 533 (826)
Q Consensus 458 ~~~~~L~~~GL~IL~kLA~D~---~NC~~I~~-t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~G 533 (826)
..+|+-...+|.-|+++...+ ++...+.. -+.++..|+. .. .+....+++.++.++..|+...|
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~----------~l--~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIK----------QL--SDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-----------S---HH---HHHHHHHHHHHHHHHHG
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHH----------HH--hhhHHHHHHHHHHHHHHHHHHHh
Confidence 357999999999999998744 22221110 0111112221 11 12455688999999999987654
Q ss_pred chhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhH-HHHHHHHHhcCCCCCchhh
Q 003365 534 ITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGM-LKELFNILFKEGMPENQNC 612 (826)
Q Consensus 534 e~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~i-I~~L~~iFl~~~~~~~~~~ 612 (826)
.. +... ...++..|-+.+.+. .+..++-|...|..+.-.- +....+ ...+.... . ++...
T Consensus 86 ~~---~~~~---~~~~l~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~~------~~~~~~~~~~l~~~~-~----~Kn~~ 146 (228)
T PF12348_consen 86 SH---FEPY---ADILLPPLLKKLGDS--KKFIREAANNALDAIIESC------SYSPKILLEILSQGL-K----SKNPQ 146 (228)
T ss_dssp GG---GHHH---HHHHHHHHHHGGG-----HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHT-T-----S-HH
T ss_pred Hh---HHHH---HHHHHHHHHHHHccc--cHHHHHHHHHHHHHHHHHC------CcHHHHHHHHHHHHH-h----CCCHH
Confidence 42 2211 134555666555554 4789999999998886322 211222 33333322 2 13346
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHhh----hhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHH
Q 003365 613 VRIAAGEALAMLALDSKSNCHRILKL----KVVDKLVETLAV--PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPT 685 (826)
Q Consensus 613 lr~~AGeALamLa~es~~Nc~~ILke----~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~ 685 (826)
+|..+.+.|.........+...+-+. ..++-+...+.| ++.|..|-+.+..+..+.+..-...+..++....+
T Consensus 147 vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk 225 (228)
T PF12348_consen 147 VREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQK 225 (228)
T ss_dssp HHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-------------
T ss_pred HHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcccc
Confidence 88888888887755444222222222 456667777887 68899999999999876554322223334444443
No 33
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.68 E-value=61 Score=40.69 Aligned_cols=221 Identities=20% Similarity=0.190 Sum_probs=120.7
Q ss_pred hhhhhHHHHHccCCCChHHHHHHHHHHHhcc--CCccccc--cccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH
Q 003365 548 FTISNIRDILLHGEKHPLLQKLGIDILTSLA--LEEDATE--RIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAM 623 (826)
Q Consensus 548 f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA--~D~~~re--~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALam 623 (826)
-++.+|..+|+|. .+.+++.+|...|+.|. +-+...- +-+.++.+..+|+-|=.- -.|-|.|..
T Consensus 211 slvp~Lv~LL~~E-~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ieyi-----------DvAEQ~LqA 278 (1051)
T KOG0168|consen 211 SLVPVLVALLSHE-HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYI-----------DVAEQSLQA 278 (1051)
T ss_pred HHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhh-----------HHHHHHHHH
Confidence 5678899999886 35999999999999993 2222100 002234455555543110 135555544
Q ss_pred HhccCcchHHHHHhhhhHHHHHHhhc--cchhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhc-hhhhHHH-
Q 003365 624 LALDSKSNCHRILKLKVVDKLVETLA--VPLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITS-EDYKLQE- 699 (826)
Q Consensus 624 La~es~~Nc~~ILke~vi~~Lv~mL~--d~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~-~e~k~LE- 699 (826)
|=.-|...-.+||+++-+-.-..-|+ ...-.-+|-.|--|.|.--.+| +.+.+.+++|. |..+++ ++.|.+|
T Consensus 279 LE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd---~f~~v~ealPl-L~~lLs~~D~k~ies 354 (1051)
T KOG0168|consen 279 LEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD---EFHFVMEALPL-LTPLLSYQDKKPIES 354 (1051)
T ss_pred HHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cchHHHHHHHH-HHHHHhhccchhHHH
Confidence 44445556678888833322222221 1222346777888888743332 23448889987 455554 5667777
Q ss_pred HHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcC-CccHHHHHhhc
Q 003365 700 VMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDK-ATNVHIFKNLG 778 (826)
Q Consensus 700 ~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~-~~y~~~f~e~~ 778 (826)
+.|.++-=+|.+-...+--++|.. ..++++....|.-+ |++=--+.--.+|-++ ..|-++ +--...+-+.+
T Consensus 355 ~~ic~~ri~d~f~h~~~kLdql~s-----~dLi~~~~qLlsvt--~t~Ls~~~~~~vIrml-s~msS~~pl~~~tl~k~~ 426 (1051)
T KOG0168|consen 355 VCICLTRIADGFQHGPDKLDQLCS-----HDLITNIQQLLSVT--PTILSNGTYTGVIRML-SLMSSGSPLLFRTLLKLD 426 (1051)
T ss_pred HHHHHHHHHHhcccChHHHHHHhc-----hhHHHHHHHHHhcC--cccccccchhHHHHHH-HHHccCChHHHHHHHHhh
Confidence 667777666665433333333332 25788888888755 4442222222222222 333333 33334444556
Q ss_pred HHHHHHHHHHHhhc
Q 003365 779 LEMVLESVIETTAE 792 (826)
Q Consensus 779 m~eaL~~v~~T~S~ 792 (826)
+.+.|.....+-++
T Consensus 427 I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 427 IADTLKRILQGYSK 440 (1051)
T ss_pred HHHHHHHHHhccCc
Confidence 66666666655544
No 34
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=84.31 E-value=67 Score=39.88 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=61.3
Q ss_pred chhHHHHHHHHHHHhh-hcccchhhhhhh-HHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCCh
Q 003365 651 PLVRVNAARILRNLCA-SSGADCFNQLRG-VTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIME 728 (826)
Q Consensus 651 ~~~r~~AA~IL~nLC~-~s~~e~~~~Lk~-l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~ 728 (826)
.+|-.+-.+||.-+|+ +.--.. .++.- +++.+|...-...+.+.|.+|--|-|.-.||..- || + +..
T Consensus 852 eeypEvLgsILgAikaI~nvigm-~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrg-pE-~--------v~a 920 (1172)
T KOG0213|consen 852 EEYPEVLGSILGAIKAIVNVIGM-TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRG-PE-Y--------VSA 920 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhccc-cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcC-cc-c--------CCH
Confidence 4566667777777776 222111 11111 5666666666666788999999999999999753 43 2 122
Q ss_pred HH---HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhc
Q 003365 729 ID---LANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRD 766 (826)
Q Consensus 729 ~~---fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~ 766 (826)
++ ..=.|++.|.+|++ .|||-+++-+=++-+-
T Consensus 921 REWMRIcfeLlelLkahkK------~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 921 REWMRICFELLELLKAHKK------EIRRAAVNTFGYIAKA 955 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHhhhhHHHHh
Confidence 33 33367777777776 4777777766555544
No 35
>PRK09687 putative lyase; Provisional
Probab=84.26 E-value=61 Score=35.59 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=39.2
Q ss_pred hhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHh
Q 003365 548 FTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLA 625 (826)
Q Consensus 548 f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa 625 (826)
.++.-+...+++. ++..+..|+++|.+|...+.. ....+..|...++.. .+..+|..|..+|..+.
T Consensus 54 ~~~~~l~~ll~~~--d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D----~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 54 DVFRLAIELCSSK--NPIERDIGADILSQLGMAKRC------QDNVFNILNNLALED----KSACVRASAINATGHRC 119 (280)
T ss_pred hHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcC----CCHHHHHHHHHHHhccc
Confidence 4444555554443 488999999999998543321 123445565555543 22347777777777663
No 36
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=83.88 E-value=7.4 Score=50.71 Aligned_cols=189 Identities=17% Similarity=0.196 Sum_probs=115.8
Q ss_pred hHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHH-HHHHHHHHHhhCccchhhHHHHHHh
Q 003365 466 LGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVR-RSLQLVKMLASTTGITGEHLRREIS 544 (826)
Q Consensus 466 ~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~-~SLkvL~rLas~~Ge~G~~LR~eIS 544 (826)
..+..|.||.=|++....++-= |+|--|-++++..-. +|-..-++.+...++ -++-.|.+|+. |+.. =..-..
T Consensus 317 aA~~~lMK~SFDEEhR~aM~EL-G~LqAIaeLl~vDh~-mhgp~tnd~~~~aLRrYa~MALTNLTF--GDv~--NKa~LC 390 (2195)
T KOG2122|consen 317 AALCTLMKLSFDEEHRHAMNEL-GGLQAIAELLQVDHE-MHGPETNDGECNALRRYAGMALTNLTF--GDVA--NKATLC 390 (2195)
T ss_pred HHHHHHHHhhccHHHHHHHHHh-hhHHHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHhhcccc--cccc--chhhhh
Confidence 6788899998888887777654 666666665544322 222111123333333 35555666643 4322 112234
Q ss_pred hcchhhhhHHHHHccCCCChHHHHHHHHHHHhccC--CccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q 003365 545 EVVFTISNIRDILLHGEKHPLLQKLGIDILTSLAL--EEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALA 622 (826)
Q Consensus 545 ~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~--D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALa 622 (826)
.....|+-+..+|.-.. .+|++..+.||+||.. |.+.++-.-.++. ++.|+.+-+... +...|+ ..--||=
T Consensus 391 s~rgfMeavVAQL~s~p--eeL~QV~AsvLRNLSWRAD~nmKkvLrE~Gs-VtaLa~~al~~~---kEsTLK-avLSALW 463 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAP--EELLQVYASVLRNLSWRADSNMKKVLRETGS-VTALAACALRNK---KESTLK-AVLSALW 463 (2195)
T ss_pred hhhhHHHHHHHHHhcCh--HHHHHHHHHHHHhccccccccHHHHHHhhhh-HHHHHHHHHHhc---ccchHH-HHHHHHh
Confidence 44577777887776442 5899999999999976 4444433322333 467777666654 222343 3467888
Q ss_pred HHhccCcchHHHHHhh-hhHHHHHHhhccc------hhHHHHHHHHHHHhhh
Q 003365 623 MLALDSKSNCHRILKL-KVVDKLVETLAVP------LVRVNAARILRNLCAS 667 (826)
Q Consensus 623 mLa~es~~Nc~~ILke-~vi~~Lv~mL~d~------~~r~~AA~IL~nLC~~ 667 (826)
+|+.+|..|-..|-.- +.+.-|+.||.-+ +.+..|.-||+|.-.|
T Consensus 464 NLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~ 515 (2195)
T KOG2122|consen 464 NLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSL 515 (2195)
T ss_pred hhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhH
Confidence 8888888887666554 6778888888632 4556788888888776
No 37
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=83.76 E-value=82 Score=36.14 Aligned_cols=117 Identities=17% Similarity=0.227 Sum_probs=72.5
Q ss_pred hhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHH
Q 003365 462 TFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRR 541 (826)
Q Consensus 462 ~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~ 541 (826)
+...-|++|+.-+..|.+....+-+-+--+=-|+.+. .++..+.-+ ..+||+++++...++.+ +
T Consensus 40 ~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~--------~~~~~~~ER---~QALkliR~~l~~~~~~-----~ 103 (371)
T PF14664_consen 40 EVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLD--------RDNKNDVER---EQALKLIRAFLEIKKGP-----K 103 (371)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhc--------ccCCChHHH---HHHHHHHHHHHHhcCCc-----c
Confidence 6788899999999999988887765432111111111 111111111 47999999998885421 2
Q ss_pred HHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCC-ccccccccchhhHHHHHH
Q 003365 542 EISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALE-EDATERIGGTGGMLKELF 598 (826)
Q Consensus 542 eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D-~~~re~Ig~~~~iI~~L~ 598 (826)
+| ..-.++.|..|.++. ...++..+++.|..|++- .+---+-|+.+.+++.++
T Consensus 104 ~~--~~~vvralvaiae~~--~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~ 157 (371)
T PF14664_consen 104 EI--PRGVVRALVAIAEHE--DDRLRRICLETLCELALLNPELVAECGGIRVLLRALI 157 (371)
T ss_pred cC--CHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHH
Confidence 33 335778888888773 367999999999999974 443223344444444433
No 38
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.52 E-value=30 Score=39.28 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=79.6
Q ss_pred HHHHHHhhc---chhhhhHHHHHccCC--CChHHHHHHHHHHHhccCCccccccccchhhH--HHHHHHHHhcCCCCCch
Q 003365 538 HLRREISEV---VFTISNIRDILLHGE--KHPLLQKLGIDILTSLALEEDATERIGGTGGM--LKELFNILFKEGMPENQ 610 (826)
Q Consensus 538 ~LR~eIS~~---~f~lsNL~~IL~~~~--~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~i--I~~L~~iFl~~~~~~~~ 610 (826)
..|.||.+. ..-++.|-+++.|+. .+.++-|.+...|+.||-.++.+..|...++. |..|+--|.++.
T Consensus 270 AVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p----- 344 (461)
T KOG4199|consen 270 AVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDP----- 344 (461)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCCh-----
Confidence 345555443 367888888887742 23456666777778889888888777655432 233333354432
Q ss_pred hhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhh-ccc---hhHHHHHHHHHHHhhhcccc
Q 003365 611 NCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETL-AVP---LVRVNAARILRNLCASSGAD 671 (826)
Q Consensus 611 ~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL-~d~---~~r~~AA~IL~nLC~~s~~e 671 (826)
.+-..+.-++..|++.+++|...+.....-+-.+..+ ..| ...-.|+...||+..++...
T Consensus 345 -~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~ 408 (461)
T KOG4199|consen 345 -LVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN 408 (461)
T ss_pred -HHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc
Confidence 2334455667788899999999888762222222222 223 34558999999999987753
No 39
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=81.34 E-value=18 Score=39.87 Aligned_cols=163 Identities=18% Similarity=0.139 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCC--CChHHHHHHHHHHHhccCCccccccccchhhHH
Q 003365 517 TVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGE--KHPLLQKLGIDILTSLALEEDATERIGGTGGML 594 (826)
Q Consensus 517 iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~--~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI 594 (826)
+...|++++..|++..+......-.+ .+.++-.+|.... .+.+++..|+..|.+|.-.+..|+-+-. .+.+
T Consensus 121 i~~~a~~iLt~Ll~~~~~~~~~~~~~------~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v 193 (312)
T PF03224_consen 121 IQLKAAFILTSLLSQGPKRSEKLVKE------ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGV 193 (312)
T ss_dssp HHHHHHHHHHHHHTSTTT--HHHHHH------HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHH
T ss_pred HHHHHHHHHHHHHHcCCccccchHHH------HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcH
Confidence 45678999999999877666544333 3344555554322 2367889999999999999999988777 4556
Q ss_pred HHHHHHHhcCCCCC--chhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc---chhHHHHHHHHHHHhhhcc
Q 003365 595 KELFNILFKEGMPE--NQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV---PLVRVNAARILRNLCASSG 669 (826)
Q Consensus 595 ~~L~~iFl~~~~~~--~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d---~~~r~~AA~IL~nLC~~s~ 669 (826)
..|++++......+ ..-.+.-.+.=.+=.|| =++..+..+.+..++..|+.++.+ +|.--++-.+|+||+....
T Consensus 194 ~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 194 SPLFDILRKQATNSNSSGIQLQYQALLCLWLLS-FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHHHH---------HHHHHHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh-cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence 88888663221011 12234444444555665 446677777777888888888875 5666688899999998666
Q ss_pred cchhhhhhh-HHhHHHHHHHHH
Q 003365 670 ADCFNQLRG-VTAAAPTILKAI 690 (826)
Q Consensus 670 ~e~~~~Lk~-l~~alp~VL~~I 690 (826)
++. ... +...++++++..
T Consensus 273 ~~~---~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 273 KSN---IELMVLCGLLKTLQNL 291 (312)
T ss_dssp TTH---HHHHHHH-HHHHHHHH
T ss_pred HHH---HHHHHHccHHHHHHHH
Confidence 542 122 344455555433
No 40
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=81.09 E-value=23 Score=46.51 Aligned_cols=179 Identities=18% Similarity=0.249 Sum_probs=104.5
Q ss_pred HHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhh
Q 003365 473 KLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISN 552 (826)
Q Consensus 473 kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsN 552 (826)
.+...++.|..+-+. |=|+=.+-..+. .++ .-+...+++=+.|..++..--+-+ .=|+|+ .++.=
T Consensus 220 emSss~esCaamR~S-gCLpLLvQilH~-------~d~--~~kear~~A~aALHNIVhSqPD~k-r~RRE~----kvL~l 284 (2195)
T KOG2122|consen 220 EMSSSPESCAAMRRS-GCLPLLVQILHG-------PDD--EDKEARKRASAALHNIVHSQPDEK-RGRREK----KVLHL 284 (2195)
T ss_pred HhccCchhhHHHHhc-cchHHHHHHhhC-------Cch--hhHHHHHHHHHHHHHHhhcCcchh-hhHHHH----HHHHH
Confidence 455688889887666 433333321111 111 123344555566666665433322 223333 33333
Q ss_pred HHHHHccC-CC--------------ChHHHH-HHHHHHHhccCCccccc---cccchhhHHHHHHH---HHhcCCCCCc-
Q 003365 553 IRDILLHG-EK--------------HPLLQK-LGIDILTSLALEEDATE---RIGGTGGMLKELFN---ILFKEGMPEN- 609 (826)
Q Consensus 553 L~~IL~~~-~~--------------~~eLq~-lAi~ILt~LA~D~~~re---~Ig~~~~iI~~L~~---iFl~~~~~~~- 609 (826)
|..|...+ .| .-+.|- .|+-.|-.|..|++-|. +.|.-+.|-. |++ .|-... +.+
T Consensus 285 LeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIae-Ll~vDh~mhgp~-tnd~ 362 (2195)
T KOG2122|consen 285 LEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAE-LLQVDHEMHGPE-TNDG 362 (2195)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHH-HHHHHHHhcCCC-CCcH
Confidence 44343211 11 223444 68889999999998876 5666555533 554 232211 112
Q ss_pred -hhhHHHHHHHHHHHHhccCcchHHHHHhh-hhHHHHHHhhcc--chhHHHHHHHHHHHhhhc
Q 003365 610 -QNCVRIAAGEALAMLALDSKSNCHRILKL-KVVDKLVETLAV--PLVRVNAARILRNLCASS 668 (826)
Q Consensus 610 -~~~lr~~AGeALamLa~es~~Nc~~ILke-~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s 668 (826)
...||.-||-||-+|+....+|-...--. .+++-+|..|.. ++.--+-|.|||||-=.+
T Consensus 363 ~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRA 425 (2195)
T KOG2122|consen 363 ECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRA 425 (2195)
T ss_pred HHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccc
Confidence 34699999999999999999986554333 777777776643 367779999999996433
No 41
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=79.35 E-value=1.5 Score=33.42 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=27.3
Q ss_pred hHHHHHhhcCCCcchhhhhhHHHHHHhhCc
Q 003365 335 VIFGMELLDSNSPDEQLIGARILRQFAMSK 364 (826)
Q Consensus 335 VtFA~dll~S~S~~~qL~GvriL~~~l~~~ 364 (826)
-.||-.|+.|++++++--|+.||..+++..
T Consensus 5 FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 5 FNYAWGLVKSNNREDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCS
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999999998754
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=79.09 E-value=1.3e+02 Score=34.91 Aligned_cols=212 Identities=19% Similarity=0.296 Sum_probs=112.8
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHH-hccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhcccccc
Q 003365 380 VIERFVEMLNWKDPQEEEIRRSAAEILSKL-AGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANY 458 (826)
Q Consensus 380 ~i~rLi~ML~wts~~d~eiR~~AArIva~L-A~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~ 458 (826)
.++.|.++|..+ |..++..|..++.++ ..+ .....-+|..++.+..++...
T Consensus 153 ~~~~l~~lL~d~---~~~V~~~a~~~l~~i~~~~---~~~~~~~~~~~~~L~~~l~~~---------------------- 204 (526)
T PF01602_consen 153 LIPKLKQLLSDK---DPSVVSAALSLLSEIKCND---DSYKSLIPKLIRILCQLLSDP---------------------- 204 (526)
T ss_dssp HHHHHHHHTTHS---SHHHHHHHHHHHHHHHCTH---HHHTTHHHHHHHHHHHHHTCC----------------------
T ss_pred HHHHHhhhccCC---cchhHHHHHHHHHHHccCc---chhhhhHHHHHHHhhhccccc----------------------
Confidence 467777777433 468889999999888 221 111133445555555444221
Q ss_pred CcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhH
Q 003365 459 GFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEH 538 (826)
Q Consensus 459 ~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~ 538 (826)
+.| +...-+.+|.+++.....-. .+ ..++..+..+.+ .....++-.+.+.+-.+...+.
T Consensus 205 ~~~-~q~~il~~l~~~~~~~~~~~--~~-~~~i~~l~~~l~------------s~~~~V~~e~~~~i~~l~~~~~----- 263 (526)
T PF01602_consen 205 DPW-LQIKILRLLRRYAPMEPEDA--DK-NRIIEPLLNLLQ------------SSSPSVVYEAIRLIIKLSPSPE----- 263 (526)
T ss_dssp SHH-HHHHHHHHHTTSTSSSHHHH--HH-HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHSSSHH-----
T ss_pred chH-HHHHHHHHHHhcccCChhhh--hH-HHHHHHHHHHhh------------ccccHHHHHHHHHHHHhhcchH-----
Confidence 112 22333444444443111110 00 234444443332 1234555666666655443321
Q ss_pred HHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHH-HhcCCCCCchhhHHHHH
Q 003365 539 LRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNI-LFKEGMPENQNCVRIAA 617 (826)
Q Consensus 539 LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~i-Fl~~~~~~~~~~lr~~A 617 (826)
+.+ .++..|...|. ..++.++-.|.+.|..++... ...+- ...... ++..+ ++..+|..|
T Consensus 264 ~~~------~~~~~L~~lL~--s~~~nvr~~~L~~L~~l~~~~--~~~v~------~~~~~~~~l~~~---~d~~Ir~~~ 324 (526)
T PF01602_consen 264 LLQ------KAINPLIKLLS--SSDPNVRYIALDSLSQLAQSN--PPAVF------NQSLILFFLLYD---DDPSIRKKA 324 (526)
T ss_dssp HHH------HHHHHHHHHHT--SSSHHHHHHHHHHHHHHCCHC--HHHHG------THHHHHHHHHCS---SSHHHHHHH
T ss_pred HHH------hhHHHHHHHhh--cccchhehhHHHHHHHhhccc--chhhh------hhhhhhheecCC---CChhHHHHH
Confidence 111 24455666666 345889999999999997654 11111 111122 33322 345688888
Q ss_pred HHHHHHHhccCcchHHHHHhhhhHHHHHHhh---ccchhHHHHHHHHHHHhh
Q 003365 618 GEALAMLALDSKSNCHRILKLKVVDKLVETL---AVPLVRVNAARILRNLCA 666 (826)
Q Consensus 618 GeALamLa~es~~Nc~~ILke~vi~~Lv~mL---~d~~~r~~AA~IL~nLC~ 666 (826)
-+.|..|+ ++.|+..|++ .|..-+ .|+.++..++.-+..+|.
T Consensus 325 l~lL~~l~--~~~n~~~Il~-----eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 325 LDLLYKLA--NESNVKEILD-----ELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp HHHHHHH----HHHHHHHHH-----HHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred HHHHhhcc--cccchhhHHH-----HHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 88888886 5678888754 444434 356788899999999987
No 43
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.64 E-value=1.9e+02 Score=36.39 Aligned_cols=223 Identities=16% Similarity=0.218 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHhhhcCCcccccccchhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHh
Q 003365 309 SIRRFFYDAYSKCVNGSIFDGLKMDMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEML 388 (826)
Q Consensus 309 sv~~Y~~~a~~~C~~g~vf~~~~~~LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML 388 (826)
-+-..++++|.+ .-+.||--+.+++-..-.-.+++|+.+.+++...++. +-.-|.++|..|.+|+..|
T Consensus 108 d~g~~iae~fik----------~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e--~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 108 DLGLWIAEQFIK----------NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTE--LQDALLVSPMGISKLMDLL 175 (970)
T ss_pred HHHHHHHHHHHc----------CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHH--HHHHHHHCchhHHHHHHHH
Confidence 344568888764 4567777788887777777899999999999876643 3334788999999999998
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHH
Q 003365 389 NWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGL 468 (826)
Q Consensus 389 ~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL 468 (826)
.= ..+.||--|--.+.+|.++..+-=.++.|--+.+-.-|+++..+... ..+ ...--|
T Consensus 176 ~D---srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~d--------GgI-----------VveDCL 233 (970)
T KOG0946|consen 176 RD---SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLD--------GGI-----------VVEDCL 233 (970)
T ss_pred hh---hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCC--------Ccc-----------hHHHHH
Confidence 62 23679999999999999862222223445556666666666554310 001 111234
Q ss_pred HHHHHHhhccccccccccccCchhhhhcccccchhhhccc---CCChhHHHHHHHHHHHHHHHhhCccch-hh-HHHHHH
Q 003365 469 LILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNE---HDTSSQILTVRRSLQLVKMLASTTGIT-GE-HLRREI 543 (826)
Q Consensus 469 ~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~---~~~~~~~~iv~~SLkvL~rLas~~Ge~-G~-~LR~eI 543 (826)
..|.+|-.|+.--.-+=+..+-||++-.+.+. ....+. ...++...-|-.+|++++-|++. |.+ ++ .=.|+.
T Consensus 234 ~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~--f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP-~Nt~~~~~q~qk~ 310 (970)
T KOG0946|consen 234 ILLNNLLKNNISNQNFFREGSYIPRLLKLLSV--FEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP-GNTSSITHQNQKA 310 (970)
T ss_pred HHHHHHHhhCcchhhHHhccccHHHHHhhcCc--ccccCcccccccHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 44555554333333344455777777654442 111221 22233344456899999999976 544 32 233355
Q ss_pred hhcchhhhhHHHHHccCCCChHHHH
Q 003365 544 SEVVFTISNIRDILLHGEKHPLLQK 568 (826)
Q Consensus 544 S~~~f~lsNL~~IL~~~~~~~eLq~ 568 (826)
.....++.-|..||-|..-.-+.+.
T Consensus 311 l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 311 LVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHcchHHHHHHHHcCCCCcHhHHH
Confidence 5666788888888877643333443
No 44
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.78 E-value=29 Score=43.31 Aligned_cols=147 Identities=17% Similarity=0.107 Sum_probs=92.3
Q ss_pred HHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhc
Q 003365 570 GIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLA 649 (826)
Q Consensus 570 Ai~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~ 649 (826)
+++.=-.|.|..+..-.+-....+|--|+.+.-++. | -.+-..|..||..|..-.+..|.+...+..|.-|..-|.
T Consensus 189 l~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~---n-~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~ 264 (1051)
T KOG0168|consen 189 LTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH---N-FDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLL 264 (1051)
T ss_pred HHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc---c-HHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhh
Confidence 455555666654433334445677777777443332 2 336778999999998888899988888767777777666
Q ss_pred cchhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCchhhHHHHH
Q 003365 650 VPLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFE 722 (826)
Q Consensus 650 d~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~edfa~~l~ 722 (826)
-..|.-+|=.-|+-|=.-++..-..-|+ +.++..||.-+--=.---+-+.|..++.+|+-|.+++|.-+.|
T Consensus 265 ~IeyiDvAEQ~LqALE~iSR~H~~AiL~--AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e 335 (1051)
T KOG0168|consen 265 TIEYIDVAEQSLQALEKISRRHPKAILQ--AGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME 335 (1051)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH
Confidence 6778888888887775444432212222 2233334433211112234467889999999999999865443
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=77.69 E-value=1.2e+02 Score=38.76 Aligned_cols=32 Identities=28% Similarity=0.261 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 003365 377 NLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAG 411 (826)
Q Consensus 377 S~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~ 411 (826)
++.+++.|++.|. ..|.++|..|+.-+.+++.
T Consensus 650 ~~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~ 681 (897)
T PRK13800 650 PPGFGPALVAALG---DGAAAVRRAAAEGLRELVE 681 (897)
T ss_pred chhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHh
Confidence 4556666666662 2345677777777766653
No 46
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.35 E-value=40 Score=37.82 Aligned_cols=201 Identities=17% Similarity=0.195 Sum_probs=109.8
Q ss_pred HHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhh------hh
Q 003365 567 QKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKL------KV 640 (826)
Q Consensus 567 q~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke------~v 640 (826)
-+.|+.+|-||+-|..-|+.+-+. +++.||.+.++.. ..+.......|++||.+ .+-|.+++.. ..
T Consensus 59 ~~~a~~alVnlsq~~~l~~~ll~~--~~k~l~~~~~~p~-----~~lad~~cmlL~NLs~~-~~~~~~ll~~~~~~~~~~ 130 (353)
T KOG2973|consen 59 AEPAATALVNLSQKEELRKKLLQD--LLKVLMDMLTDPQ-----SPLADLICMLLSNLSRD-DDEVAALLTNLTEKKDSG 130 (353)
T ss_pred ccHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHhcCcc-----cchHHHHHHHHHHhccC-chHHHHHHHhcccccccc
Confidence 556999999999999888776554 8888888776642 33666778888898754 5667776654 34
Q ss_pred HHHHHHhhccchhH-----HHHHHHHHHHhhh-cccchhhhhhh--------HHh---HHH--HHHHHHhc--hhhhHHH
Q 003365 641 VDKLVETLAVPLVR-----VNAARILRNLCAS-SGADCFNQLRG--------VTA---AAP--TILKAITS--EDYKLQE 699 (826)
Q Consensus 641 i~~Lv~mL~d~~~r-----~~AA~IL~nLC~~-s~~e~~~~Lk~--------l~~---alp--~VL~~I~~--~e~k~LE 699 (826)
+.+|.....|..|- -.-|.|+.||... .+-+++.+.+. .+. .++ .|-..|.+ =+.+..|
T Consensus 131 lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~ 210 (353)
T KOG2973|consen 131 LMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHE 210 (353)
T ss_pred hHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHH
Confidence 56666666553332 2568888888764 33344322221 111 000 11122222 2456777
Q ss_pred HHHHhHHHHh-----hcCCchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCccHHHH
Q 003365 700 VMIGLAAQVF-----RFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKATNVHIF 774 (826)
Q Consensus 700 ~ligLa~qIc-----~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~~y~~~f 774 (826)
++++-+..+. .++.|++|+.+= -++... .| +.|..-+. ...-|-||+-.+|-...+--. ..=.+.|
T Consensus 211 ~lL~e~~~lLp~iLlPlagpee~sEEd-m~~LP~-----eL-QyLp~dKe-RepdpdIrk~llEai~lLcaT-~~GRe~l 281 (353)
T KOG2973|consen 211 VLLDESINLLPAILLPLAGPEELSEED-MAKLPV-----EL-QYLPEDKE-REPDPDIRKMLLEALLLLCAT-RAGREVL 281 (353)
T ss_pred HHhcchHHHHHHHHhhcCCccccCHHH-HhcCCH-----hh-hcCCcccc-CCCChHHHHHHHHHHHHHHhh-hHhHHHH
Confidence 7777444433 345667665430 011111 12 22221122 223688999999944443322 1223455
Q ss_pred HhhcHHHHHH
Q 003365 775 KNLGLEMVLE 784 (826)
Q Consensus 775 ~e~~m~eaL~ 784 (826)
|..|....|.
T Consensus 282 R~kgvYpilR 291 (353)
T KOG2973|consen 282 RSKGVYPILR 291 (353)
T ss_pred HhcCchHHHH
Confidence 5555444333
No 47
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.92 E-value=42 Score=39.61 Aligned_cols=120 Identities=19% Similarity=0.249 Sum_probs=89.0
Q ss_pred hhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHH
Q 003365 462 TFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRR 541 (826)
Q Consensus 462 ~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~ 541 (826)
+|..+-...|+||+-=.+|=.++... |.+.|+..+.+. +..++++.-|++|-.|.-.+| ||.
T Consensus 319 ~Ll~lv~~FLkKLSIf~eNK~~M~~~-~iveKL~klfp~------------~h~dL~~~tl~LlfNlSFD~g-----lr~ 380 (791)
T KOG1222|consen 319 SLLTLVIKFLKKLSIFDENKIVMEQN-GIVEKLLKLFPI------------QHPDLRKATLMLLFNLSFDSG-----LRP 380 (791)
T ss_pred HHHHHHHHHHHHhhhhccchHHHHhc-cHHHHHHHhcCC------------CCHHHHHHHHHHhhhcccccc-----ccH
Confidence 56666778899999855666666544 888888865543 345778888999999987755 566
Q ss_pred HHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCC
Q 003365 542 EISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEG 605 (826)
Q Consensus 542 eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~ 605 (826)
++..- .++.-|...|++++. +..|+.+|--+.+|++.+....-|. -|+.||+..+...
T Consensus 381 KMv~~-GllP~l~~ll~~d~~----~~iA~~~lYh~S~dD~~K~MfayTd-ci~~lmk~v~~~~ 438 (791)
T KOG1222|consen 381 KMVNG-GLLPHLASLLDSDTK----HGIALNMLYHLSCDDDAKAMFAYTD-CIKLLMKDVLSGT 438 (791)
T ss_pred HHhhc-cchHHHHHHhCCccc----chhhhhhhhhhccCcHHHHHHHHHH-HHHHHHHHHHhcC
Confidence 76654 788889999887653 4569999999999999987776664 4588888766653
No 48
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=74.19 E-value=1.3e+02 Score=38.89 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=67.1
Q ss_pred hhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHH
Q 003365 462 TFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRR 541 (826)
Q Consensus 462 ~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~ 541 (826)
+++-+.|.++..++.+.+.-..|... +.+.-+..+ +|+ +...=...|.||--|+|+ |++| .
T Consensus 1787 ~iq~LaL~Vi~~~Tan~~Cv~~~a~~-~vL~~LL~l-------LHS------~PS~R~~vL~vLYAL~S~-~~i~----k 1847 (2235)
T KOG1789|consen 1787 KLQILALQVILLATANKECVTDLATC-NVLTTLLTL-------LHS------QPSMRARVLDVLYALSSN-GQIG----K 1847 (2235)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHhh-hHHHHHHHH-------Hhc------ChHHHHHHHHHHHHHhcC-cHHH----H
Confidence 56778899999998877755566655 455555533 332 222336789999999998 5666 4
Q ss_pred HHhhcchhhhhHHHHHc--cCCCChHHHHHHHHHHHhccCCcc
Q 003365 542 EISEVVFTISNIRDILL--HGEKHPLLQKLGIDILTSLALEED 582 (826)
Q Consensus 542 eIS~~~f~lsNL~~IL~--~~~~~~eLq~lAi~ILt~LA~D~~ 582 (826)
+-.+|- -|.+||. |.+.+++.+-.|++.|..|.-|.=
T Consensus 1848 eA~~hg----~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl 1886 (2235)
T KOG1789|consen 1848 EALEHG----GLMYILSILCLTNSDQQRAQAAELLAKLQADKL 1886 (2235)
T ss_pred HHHhcC----chhhhhHHHhccCcHHHHHHHHHHHHHhhhccc
Confidence 445552 2345553 667789999999999999976654
No 49
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=68.94 E-value=55 Score=39.49 Aligned_cols=104 Identities=20% Similarity=0.257 Sum_probs=59.6
Q ss_pred hhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH-Hhc
Q 003365 548 FTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAM-LAL 626 (826)
Q Consensus 548 f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALam-La~ 626 (826)
.+++.|+-.|.-.. ..+|=-|+.||.+|||-.. +.+..+..=|..|+. . +| |-.+.=|.-. |-+
T Consensus 303 ~~vs~L~~fL~s~r--v~~rFsA~Riln~lam~~P--~kv~vcN~evEsLIs----d---~N----r~IstyAITtLLKT 367 (898)
T COG5240 303 QTVSSLRTFLKSTR--VVLRFSAMRILNQLAMKYP--QKVSVCNKEVESLIS----D---EN----RTISTYAITTLLKT 367 (898)
T ss_pred HHHHHHHHHHhcch--HHHHHHHHHHHHHHHhhCC--ceeeecChhHHHHhh----c---cc----ccchHHHHHHHHHc
Confidence 35666666654322 4577789999999998665 344444333345543 1 11 1122223322 223
Q ss_pred cCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccc
Q 003365 627 DSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCASSGAD 671 (826)
Q Consensus 627 es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e 671 (826)
....|-.+. ++.++.+.+| |.++++|-.-+|.||..-..+
T Consensus 368 Gt~e~idrL-----v~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k 409 (898)
T COG5240 368 GTEETIDRL-----VNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK 409 (898)
T ss_pred CchhhHHHH-----HHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH
Confidence 333333332 4455567777 889999999999999854443
No 50
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=68.76 E-value=1.2e+02 Score=36.00 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=54.1
Q ss_pred CCchhhHHHHHh-cCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCccHHHHHhhcHHHHHHHHHHHh
Q 003365 712 MTREESSNIFER-AGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKATNVHIFKNLGLEMVLESVIETT 790 (826)
Q Consensus 712 i~~edfa~~l~~-~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~~y~~~f~e~~m~eaL~~v~~T~ 790 (826)
.+|-.|++--.+ +|-...+..+||+-+|+.|. -.+.|-+-=-++.|-+|--.+ .-.+.|.|-|-..+|.+|+..|
T Consensus 360 ~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R-~EAq~i~AF~l~~EAaIKs~Q---~K~kVFseIGAIQaLKevaSS~ 435 (832)
T KOG3678|consen 360 LDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNR-LEAQCIGAFYLCAEAAIKSLQ---GKTKVFSEIGAIQALKEVASSP 435 (832)
T ss_pred cCcchhhhhhhhhhccCChHHHHHhhhhhhcch-hhhhhhHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHhcCc
Confidence 356667653322 23233468899999999665 567788888889998886553 4578899999999999998654
No 51
>PF05536 Neurochondrin: Neurochondrin
Probab=65.73 E-value=1.2e+02 Score=36.48 Aligned_cols=180 Identities=15% Similarity=0.169 Sum_probs=95.1
Q ss_pred hhhhhHHHHHHHHhhcccccccccccc---CchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhH
Q 003365 462 TFNHLGLLILKKLARNHDNCGKIGNTR---GLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEH 538 (826)
Q Consensus 462 ~L~~~GL~IL~kLA~D~~NC~~I~~t~---gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~ 538 (826)
.+.-+|+.||..++.|++-- ... +-||-+++....++ ...++..+++.|..+++++ .|
T Consensus 72 ~~~~LavsvL~~f~~~~~~a----~~~~~~~~IP~Lle~l~~~s-----------~~~~v~dalqcL~~Ias~~--~G-- 132 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELA----SSPQMVSRIPLLLEILSSSS-----------DLETVDDALQCLLAIASSP--EG-- 132 (543)
T ss_pred HHHHHHHHHHHHHcCChhhh----cCHHHHHHHHHHHHHHHcCC-----------chhHHHHHHHHHHHHHcCc--Hh--
Confidence 34667888888887765432 222 33444444332221 1467899999999999664 45
Q ss_pred HHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccc----cchhhHHHHHHHHHhcCCCCCchhhHH
Q 003365 539 LRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERI----GGTGGMLKELFNILFKEGMPENQNCVR 614 (826)
Q Consensus 539 LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~I----g~~~~iI~~L~~iFl~~~~~~~~~~lr 614 (826)
++.+.+. ..++.|.+|+.+ ++..++.|..||-+|.-+.+. +.. .....++..|-..|-..+ ...+
T Consensus 133 -~~aLl~~-g~v~~L~ei~~~---~~~~~E~Al~lL~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs~~~-----~~~k 201 (543)
T PF05536_consen 133 -AKALLES-GAVPALCEIIPN---QSFQMEIALNLLLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFSSFH-----GEDK 201 (543)
T ss_pred -HHHHHhc-CCHHHHHHHHHh---CcchHHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHHhhc-----cchH
Confidence 2344443 889999999887 355678899999988543331 111 111244455555554332 1233
Q ss_pred HHHHHHHHHHhccCcch-HHHHHhh----hhHHHHHHhhcc---chhHHHHHHHHHHHhhhcccc
Q 003365 615 IAAGEALAMLALDSKSN-CHRILKL----KVVDKLVETLAV---PLVRVNAARILRNLCASSGAD 671 (826)
Q Consensus 615 ~~AGeALamLa~es~~N-c~~ILke----~vi~~Lv~mL~d---~~~r~~AA~IL~nLC~~s~~e 671 (826)
..+-+-|..+-..++-. ......+ ++..-|..+|.+ +.+|-.|-.+...|..+.+.+
T Consensus 202 fell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 202 FELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 34444454443333111 1111111 455556666665 455554444444444434433
No 52
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=65.25 E-value=91 Score=33.36 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhccCCccccccccchh-hHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhh-h--h
Q 003365 565 LLQKLGIDILTSLALEEDATERIGGTG-GMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKL-K--V 640 (826)
Q Consensus 565 eLq~lAi~ILt~LA~D~~~re~Ig~~~-~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke-~--v 640 (826)
+.+=.+.+++|-++.+..+..-+.... ++...+...+.... .+.....++.+-..+++|- .++.....++.. . +
T Consensus 78 ~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~ml~lR~l~NlF-~~~~~~~~~~~~~~~~i 155 (268)
T PF08324_consen 78 ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGS-SSSPPANQMLALRLLANLF-SHPPGRQLLLSHFDSSI 155 (268)
T ss_dssp CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCT-TTSSHHHHHHHHHHHHHHT-TSCCCHHHHHCTHHTCH
T ss_pred ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhcc-CCCcHHHHHHHHHHHHHhh-CCCccHHHHHhcccchH
Confidence 446679999999999988865444432 23344444333322 2234457888999999984 566677777766 4 3
Q ss_pred HHHHHHhhc-----cchhHHHHHHHHHHHhhhcccch-hhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcC
Q 003365 641 VDKLVETLA-----VPLVRVNAARILRNLCASSGADC-FNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFM 712 (826)
Q Consensus 641 i~~Lv~mL~-----d~~~r~~AA~IL~nLC~~s~~e~-~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i 712 (826)
++.+..... +...++.+|.++-|++.+...+- -.+. -...+..+.+. ...+...-|+.-.+.+.+-.++
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~--~~~ll~~i~~~-~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEW--QSELLSSIIEV-LSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCH--HHHHHHHHHHH-CHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHH-hccccCCHHHHHHHHHHHHHHh
Confidence 333333333 46789999999999998654322 1111 11112222222 3334445676666666666644
No 53
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=63.37 E-value=1.9e+02 Score=35.05 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=47.9
Q ss_pred hhhhhHHHHHccCCCChHHHHHHHHHHHhccC--CccccccccchhhHHHHHHH-HHhcCC-CCCchhh---HHHHHHHH
Q 003365 548 FTISNIRDILLHGEKHPLLQKLGIDILTSLAL--EEDATERIGGTGGMLKELFN-ILFKEG-MPENQNC---VRIAAGEA 620 (826)
Q Consensus 548 f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~--D~~~re~Ig~~~~iI~~L~~-iFl~~~-~~~~~~~---lr~~AGeA 620 (826)
|++.-+.++|+|-+ .+--++.++||++|-+ +..+ +.+.+.++....+ +.|+.. ..++.+. +-...-+|
T Consensus 178 ~i~~~ikkvL~DVT--aeEF~l~m~lL~~lk~~~~~~t---~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~A 252 (556)
T PF05918_consen 178 FIVDEIKKVLQDVT--AEEFELFMSLLKSLKIYGGKQT---IEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQA 252 (556)
T ss_dssp HHHHHHHHHCTT----HHHHHHHHHHHHTSGG---GSS---HHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--HHHHHHHHHHHHhCccccccCC---hHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHh
Confidence 44455666776644 5666778899999976 2222 1222334444442 334432 1223222 33344555
Q ss_pred HHHHhccCcchHHHHHh---hhhHHHHHHhhccchhHHHHHHHHHHHhhhccc
Q 003365 621 LAMLALDSKSNCHRILK---LKVVDKLVETLAVPLVRVNAARILRNLCASSGA 670 (826)
Q Consensus 621 LamLa~es~~Nc~~ILk---e~vi~~Lv~mL~d~~~r~~AA~IL~nLC~~s~~ 670 (826)
|--.+.. .++ ..++. ..++..+-.+ ++..+.--=++|.-+|.|+++
T Consensus 253 lp~fs~~-v~S-skfv~y~~~kvlP~l~~l--~e~~kl~lLk~lAE~s~~~~~ 301 (556)
T PF05918_consen 253 LPFFSRG-VSS-SKFVNYMCEKVLPKLSDL--PEDRKLDLLKLLAELSPFCGA 301 (556)
T ss_dssp GGG-BTT-B---HHHHHHHHHHTCCCTT-------HHHHHHHHHHHHHTT---
T ss_pred hHHhcCC-CCh-HHHHHHHHHHhcCChhhC--ChHHHHHHHHHHHHHcCCCCc
Confidence 5554332 222 22221 1333333222 234455455566666778775
No 54
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=61.99 E-value=71 Score=38.05 Aligned_cols=181 Identities=21% Similarity=0.231 Sum_probs=96.1
Q ss_pred HHhhccccccccccccC----chhhhhcccccchhhhcccC-CChhHHHHHHHHHHHHHHHhhCccc---------hhhH
Q 003365 473 KLARNHDNCGKIGNTRG----LLPKIIDFTHAEESLLRNEH-DTSSQILTVRRSLQLVKMLASTTGI---------TGEH 538 (826)
Q Consensus 473 kLA~D~~NC~~I~~t~g----LIsKII~ft~~~~~ll~~~~-~~~~~~~iv~~SLkvL~rLas~~Ge---------~G~~ 538 (826)
+-..|++|-.+|++.+. ++++|-. .....+... ....-...+....|+++....-|-+ +|.
T Consensus 231 ~k~e~e~n~~~iGk~~~~I~~~~~~ieS----~~hvVek~~~~~~s~~~~~~~t~ql~k~~l~~pTe~v~~l~~~~I~~- 305 (763)
T KOG4231|consen 231 KKMEDEGNRSVIGKDENAIRQLISMIES----DQHVVEKACVALSSLARDVGVTMQLMKCDLMKPTETVLKLSSPDIIS- 305 (763)
T ss_pred HHhhCcccceeecccchhhhhhcccccc----cchhhcccccccccHHHHHHHHHHHHHHHhcCcchhhhhhccccHhh-
Confidence 33459999999987654 3333221 011111111 1112334445566666655544444 332
Q ss_pred HHHHHhhcch---------hhhhHHHHHc--cCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCC
Q 003365 539 LRREISEVVF---------TISNIRDILL--HGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMP 607 (826)
Q Consensus 539 LR~eIS~~~f---------~lsNL~~IL~--~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~ 607 (826)
|-+.+-.-+| .--.+.+.|. +-.++++||..|..+++++++|-++|...-..+.+-..+|....-..
T Consensus 306 l~~~v~~~~~~s~s~~Qe~~~K~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~-- 383 (763)
T KOG4231|consen 306 LLQVVVTLAFVSDSVSQEMLTKDMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPE-- 383 (763)
T ss_pred HHHHHhcCCchhhhHHhhhhHHHHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccc--
Confidence 2233322211 1133444554 34678999999999999999998888754445666566666444332
Q ss_pred CchhhHHHHHHHHHHHHhccCcchHHHHHhh-----hhHHHHHHhhc-c--chhHHHHHHHHHHHhhhcc
Q 003365 608 ENQNCVRIAAGEALAMLALDSKSNCHRILKL-----KVVDKLVETLA-V--PLVRVNAARILRNLCASSG 669 (826)
Q Consensus 608 ~~~~~lr~~AGeALamLa~es~~Nc~~ILke-----~vi~~Lv~mL~-d--~~~r~~AA~IL~nLC~~s~ 669 (826)
-.+.+.||.||+.+- + | .||+. .|-++=+.+|+ | .-...++-.+|+.+-.-++
T Consensus 384 ---~~~~~~~~~a~~~~~-~---~--eil~~~~~~~~vkg~G~rILSiDGGGtrG~~~lqiL~kieklsg 444 (763)
T KOG4231|consen 384 ---PRVNKAAARALAILG-E---N--EILRRSIKGRQVKGQGLRILSIDGGGTRGLATLQILKKIEKLSG 444 (763)
T ss_pred ---cccchhhhHHHHHhh-h---h--HHHHhhccccccCCCceEEEEecCCCccchhHHHHHHHHHHhcC
Confidence 114467899999885 2 2 55544 12222222333 2 2345566666666655443
No 55
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=61.77 E-value=43 Score=34.96 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHhccCcchHHHHHhh--hh--HHHHHHhhc--cchhHHHHHHHHH
Q 003365 590 TGGMLKELFNILFKEG-MPENQNCVRIAAGEALAMLALDSKSNCHRILKL--KV--VDKLVETLA--VPLVRVNAARILR 662 (826)
Q Consensus 590 ~~~iI~~L~~iFl~~~-~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke--~v--i~~Lv~mL~--d~~~r~~AA~IL~ 662 (826)
.+..+..|++.|.... .+.+...--.-.|--|+++| ..+.-...++.. .. +.+|+-.++ +...|-.+|.+++
T Consensus 50 ~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS-~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~Ir 128 (192)
T PF04063_consen 50 SGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS-QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIR 128 (192)
T ss_pred hHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc-CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 3567899999999821 11122222224567788885 445555666655 33 777777665 4678889999999
Q ss_pred HHhhhccc-chhhhhhhH-HhHHHHHHHHHhc
Q 003365 663 NLCASSGA-DCFNQLRGV-TAAAPTILKAITS 692 (826)
Q Consensus 663 nLC~~s~~-e~~~~Lk~l-~~alp~VL~~I~~ 692 (826)
|.|..... ++. |.+= .+.+|.+|-=++.
T Consensus 129 NccFd~~~H~~L--L~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 129 NCCFDTDSHEWL--LSDDEVDILPYLLLPLAG 158 (192)
T ss_pred HhhccHhHHHHh--cCchhhhhHHHHHhhccC
Confidence 99984432 222 2222 4666666655543
No 56
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=61.64 E-value=4.5e+02 Score=33.70 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhcccc
Q 003365 377 NLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQT 435 (826)
Q Consensus 377 S~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt 435 (826)
...+++.|+++|. ..|..+|..|++++.++.. |++++.+..+|+.
T Consensus 619 ~~~~~~~L~~~L~---D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D 663 (897)
T PRK13800 619 DAPSVAELAPYLA---DPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGD 663 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcC
Confidence 5568899999996 4467999999999999864 6788877777753
No 57
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=60.45 E-value=14 Score=27.36 Aligned_cols=36 Identities=28% Similarity=0.214 Sum_probs=29.5
Q ss_pred chHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHh
Q 003365 630 SNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLC 665 (826)
Q Consensus 630 ~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC 665 (826)
+|+..|...+.++.|+.+|.. ++.+..|+..|+|||
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 477777777889999998864 577889999999997
No 58
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=58.83 E-value=2.7e+02 Score=32.98 Aligned_cols=204 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHH
Q 003365 566 LQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLV 645 (826)
Q Consensus 566 Lq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv 645 (826)
+.+.+.+...-|-..+++.+..-..+.+.+.+.+.| ++++..+...+.=|+++++ ...+||--+...+++++|+
T Consensus 289 l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~-----~S~d~~l~t~g~LaigNfa-R~D~~ci~~v~~~~~nkL~ 362 (604)
T KOG4500|consen 289 LFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF-----RSDDSNLITMGSLAIGNFA-RRDDICIQLVQKDFLNKLI 362 (604)
T ss_pred HHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh-----cCCchhHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHH
Q ss_pred Hhhcc-------chhHHHHHHHHHHHhh-hcccchhhh-------hhhHHhHHHHH-------HHHHhchhhhHHHHHH-
Q 003365 646 ETLAV-------PLVRVNAARILRNLCA-SSGADCFNQ-------LRGVTAAAPTI-------LKAITSEDYKLQEVMI- 702 (826)
Q Consensus 646 ~mL~d-------~~~r~~AA~IL~nLC~-~s~~e~~~~-------Lk~l~~alp~V-------L~~I~~~e~k~LE~li- 702 (826)
+.|.. -+..+-+-+-||||.. -...-++.. |+.+..+.|.| |+.|.+...+..+-+.
T Consensus 363 ~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~k 442 (604)
T KOG4500|consen 363 SCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAK 442 (604)
T ss_pred HHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhc
Q ss_pred --HhHHHHhhcCCchhhHHHHHhcCCChHHHHHH--HHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCccHHHHHhhc
Q 003365 703 --GLAAQVFRFMTREESSNIFERAGIMEIDLANT--LVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKATNVHIFKNLG 778 (826)
Q Consensus 703 --gLa~qIc~~i~~edfa~~l~~~~i~~~~fv~k--Lv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~~y~~~f~e~~ 778 (826)
-|.-|.-++-...||+.+--+.+-.-.-|+|- ++++.-.-.+-.- ||..++|...+.-...-
T Consensus 443 n~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~---------ik~~Vsm~t~~hi~mqn----- 508 (604)
T KOG4500|consen 443 NPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGG---------IKEKVSMFTKNHINMQN----- 508 (604)
T ss_pred CHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhcccccc---------HHHHHHHHHHhhHHHhH-----
Q ss_pred HHHHHHHHHHHhh
Q 003365 779 LEMVLESVIETTA 791 (826)
Q Consensus 779 m~eaL~~v~~T~S 791 (826)
|+|-.+.-|.+
T Consensus 509 --EalVal~~~~~ 519 (604)
T KOG4500|consen 509 --EALVALLSTES 519 (604)
T ss_pred --HHHHHHHHHHH
No 59
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=58.13 E-value=2.1e+02 Score=34.89 Aligned_cols=89 Identities=20% Similarity=0.107 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHH
Q 003365 564 PLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDK 643 (826)
Q Consensus 564 ~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~ 643 (826)
...+..|++.++.|.+.=+..+ ..++.-|.++.++.++- ..++.+-+|+.-...-.+.. ||..++.
T Consensus 389 D~FKiI~ida~rsLsl~Fp~k~-----~s~l~FL~~~L~~eGg~----eFK~~~Vdaisd~~~~~p~s-----kEraLe~ 454 (898)
T COG5240 389 DGFKIIAIDALRSLSLLFPSKK-----LSYLDFLGSSLLQEGGL----EFKKYMVDAISDAMENDPDS-----KERALEV 454 (898)
T ss_pred cCceEEeHHHHHHHHhhCcHHH-----HHHHHHHHHHHHhcccc----hHHHHHHHHHHHHHhhCchH-----HHHHHHH
Confidence 3467789999998876544322 23455555555554322 24555666665332211222 3334566
Q ss_pred HHHhhccchhHHHHHHHHHHHhh
Q 003365 644 LVETLAVPLVRVNAARILRNLCA 666 (826)
Q Consensus 644 Lv~mL~d~~~r~~AA~IL~nLC~ 666 (826)
|-..++|-+|--++.+||.-|-.
T Consensus 455 LC~fIEDcey~~I~vrIL~iLG~ 477 (898)
T COG5240 455 LCTFIEDCEYHQITVRILGILGR 477 (898)
T ss_pred HHHHHhhcchhHHHHHHHHHhcc
Confidence 66667776777777777776643
No 60
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=57.58 E-value=43 Score=31.05 Aligned_cols=66 Identities=26% Similarity=0.278 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhh--hhHHHHHHhhccchhH-HHHHHHHHHH
Q 003365 591 GGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKL--KVVDKLVETLAVPLVR-VNAARILRNL 664 (826)
Q Consensus 591 ~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke--~vi~~Lv~mL~d~~~r-~~AA~IL~nL 664 (826)
+.||+.++..|-++ +..+|..|.|||.+++...+ ..|+.. ++.+-|...+.|++-. -.+|++|-+|
T Consensus 26 ~~Il~pVL~~~~D~-----d~rVRy~AcEaL~ni~k~~~---~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQ-----DSRVRYYACEALYNISKVAR---GEILPYFNEIFDALCKLSADPDENVRSAAELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 56777777766443 45699999999999975443 244433 6777777777774333 3677887766
No 61
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=56.14 E-value=1.2e+02 Score=30.59 Aligned_cols=118 Identities=13% Similarity=0.161 Sum_probs=77.6
Q ss_pred hhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccchh-hhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCc-
Q 003365 639 KVVDKLVETLAV--PLVRVNAARILRNLCASSGADCF-NQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTR- 714 (826)
Q Consensus 639 ~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e~~-~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~- 714 (826)
..+.++.+.|++ ++-|-.++.++.-.|.+.+.|.+ +.-...-..+=++|+. ...-..+|..+.....|+..+..
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~--~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK--PDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345666677876 67799999999999998876654 2222222222223332 22235788888888899985533
Q ss_pred hhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCC
Q 003365 715 EESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKA 768 (826)
Q Consensus 715 edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~ 768 (826)
.+|.+++--..++ .|++-|...++. +-..-.+++..-.+|.+.|
T Consensus 103 p~l~Rei~tp~l~--~~i~~ll~l~~~--------~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 103 PTLTREIATPNLP--KFIQSLLQLLQD--------SSCPETALDALATLLPHHP 146 (165)
T ss_pred CchHHHHhhccHH--HHHHHHHHHHhc--------cccHHHHHHHHHHHHHHCC
Confidence 5778877655554 588888888775 4445567777777776654
No 62
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=55.74 E-value=20 Score=27.34 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh
Q 003365 377 NLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLA 410 (826)
Q Consensus 377 S~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA 410 (826)
..+.+..|+++|. ..|.++|+.|+..+.+|+
T Consensus 10 ~~g~i~~Lv~ll~---~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 10 EAGGIPPLVQLLK---SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HTTHHHHHHHHTT---SSSHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHc---CCCHHHHHHHHHHHHHHh
Confidence 4578999999999 345799999999999987
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.15 E-value=3.6e+02 Score=34.08 Aligned_cols=213 Identities=17% Similarity=0.177 Sum_probs=112.6
Q ss_pred CChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCC--------------CchhhHHHHHHHHHHHHhcc
Q 003365 562 KHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMP--------------ENQNCVRIAAGEALAMLALD 627 (826)
Q Consensus 562 ~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~--------------~~~~~lr~~AGeALamLa~e 627 (826)
.++.|+++|+.||...-.+++.--+ -+=+++|+.. +..+++ +.+.+++..|-|-+-.|.
T Consensus 306 ~~~~LrvlainiLgkFL~n~d~Nir----YvaLn~L~r~-V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv-- 378 (866)
T KOG1062|consen 306 SNSGLRVLAINILGKFLLNRDNNIR----YVALNMLLRV-VQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV-- 378 (866)
T ss_pred CCchHHHHHHHHHHHHhcCCcccee----eeehhhHHhh-hcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh--
Confidence 4578999999999987554432111 1113455542 222111 124578888988887775
Q ss_pred CcchHHHHHhhhhHHHHHHhhc--cchhHH-HHHHHHHHHhhhcccch-hhh--hhhHHhH--------HHHHHHHHhch
Q 003365 628 SKSNCHRILKLKVVDKLVETLA--VPLVRV-NAARILRNLCASSGADC-FNQ--LRGVTAA--------APTILKAITSE 693 (826)
Q Consensus 628 s~~Nc~~ILke~vi~~Lv~mL~--d~~~r~-~AA~IL~nLC~~s~~e~-~~~--Lk~l~~a--------lp~VL~~I~~~ 693 (826)
+.+|...|.+ +|...|+ |+.+|. +|+.|..--=.|+.++- .-| ++-++.+ ....+.-|-+.
T Consensus 379 n~~Nv~~mv~-----eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 379 NESNVRVMVK-----ELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred ccccHHHHHH-----HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 5678888854 4444443 455655 55555544444777652 222 2222221 22222223221
Q ss_pred --------hhhHHHHHHHhH---------HHHhhcCCchhhHHHHHhc-------CCChHHHHHHHHHHHhhcCCCCC--
Q 003365 694 --------DYKLQEVMIGLA---------AQVFRFMTREESSNIFERA-------GIMEIDLANTLVQILRKYQHPPI-- 747 (826)
Q Consensus 694 --------e~k~LE~ligLa---------~qIc~~i~~edfa~~l~~~-------~i~~~~fv~kLv~iL~~n~~Pt~-- 747 (826)
..++.+++.... .|.--|.-. |..+.+-++ .+++.+.+.+|-++++.|+.-+.
T Consensus 454 ~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IG-EYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk 532 (866)
T KOG1062|consen 454 FQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIG-EYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTK 532 (866)
T ss_pred CcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhh-hhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHH
Confidence 123333333321 111111111 112222222 56788899999998887765311
Q ss_pred ----------------CCChHHHHHHHHHHH----HHhcCCccHHHHHh-hcHHHHHHHHH
Q 003365 748 ----------------KVPRIRRYAIELAIW----MMRDKATNVHIFKN-LGLEMVLESVI 787 (826)
Q Consensus 748 ----------------~~prIRR~~vE~~I~----mm~~~~~y~~~f~e-~~m~eaL~~v~ 787 (826)
..+||+++|.+.-.+ |-++.-.|-..|++ ..|+++|-+..
T Consensus 533 ~yal~Al~KLSsr~~s~~~ri~~lI~~~~~s~~~elQQRa~E~~~l~~~~~~lr~siLe~m 593 (866)
T KOG1062|consen 533 GYALTALLKLSSRFHSSSERIKQLISSYKSSLDTELQQRAVEYNALFAKDKHLRKSILERM 593 (866)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 268899999886554 33343467777844 45777665443
No 64
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=54.19 E-value=32 Score=37.29 Aligned_cols=136 Identities=22% Similarity=0.215 Sum_probs=79.7
Q ss_pred HHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCC--------------------------------hHHHHHH
Q 003365 523 QLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKH--------------------------------PLLQKLG 570 (826)
Q Consensus 523 kvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~--------------------------------~eLq~lA 570 (826)
+++|-|...||+-. ++++|+.++.-|.++|.-...+ ..|++-|
T Consensus 12 NIlR~LSFvpGnd~-----emskh~~lL~ilGrlLlL~h~h~~r~~~~~~~~~~e~~~~~~~~~~~~wwwd~l~~lREna 86 (257)
T PF12031_consen 12 NILRGLSFVPGNDT-----EMSKHPGLLLILGRLLLLHHEHPERKQKPRTYDREEEEDESLSCSEAEWWWDCLEQLRENA 86 (257)
T ss_pred HHHhccCcCCCcHH-----HHhhChhHHHHHHHHHhcccCCcccccCCCCcchhhhhccccccchHHHHHHHHHHHhhcc
Confidence 47888888888765 8888888888888877311111 1223333
Q ss_pred HHHHHhccCCccc---cccccchhhHHHHHHHHHhcCC-------CCC---chhhHHHHHHHHHHHHhccCcchHHHHHh
Q 003365 571 IDILTSLALEEDA---TERIGGTGGMLKELFNILFKEG-------MPE---NQNCVRIAAGEALAMLALDSKSNCHRILK 637 (826)
Q Consensus 571 i~ILt~LA~D~~~---re~Ig~~~~iI~~L~~iFl~~~-------~~~---~~~~lr~~AGeALamLa~es~~Nc~~ILk 637 (826)
.=+|+|++.-=+- .+.| ..-|+.-|++.-.... ++. ..-+.+..|=|||++|+.. ++|..-||.
T Consensus 87 lV~laNisgqLdLs~~~e~I--~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~-e~NVDliLa 163 (257)
T PF12031_consen 87 LVTLANISGQLDLSDYPESI--ARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVI-ENNVDLILA 163 (257)
T ss_pred eEeeeeeeeeeecccCchHH--HHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhhee-ccCcceeee
Confidence 3344444321111 1111 1234455555433221 111 1225677899999999754 578777765
Q ss_pred h-------hhHHHHHHhhc---cchhHHHHHHHHHHHhh
Q 003365 638 L-------KVVDKLVETLA---VPLVRVNAARILRNLCA 666 (826)
Q Consensus 638 e-------~vi~~Lv~mL~---d~~~r~~AA~IL~nLC~ 666 (826)
- ..+..|+..|. |.-+|..|-.||.|||.
T Consensus 164 Tpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~ 202 (257)
T PF12031_consen 164 TPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQ 202 (257)
T ss_pred CCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhc
Confidence 4 34444444444 46789999999999997
No 65
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=52.14 E-value=4.1e+02 Score=30.29 Aligned_cols=291 Identities=18% Similarity=0.192 Sum_probs=139.2
Q ss_pred cchhHHHHHhhcCCCc-chhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh
Q 003365 332 MDMVIFGMELLDSNSP-DEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLA 410 (826)
Q Consensus 332 ~~LVtFA~dll~S~S~-~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA 410 (826)
.|=|.|..|-+++++| .-+-.++-=|-+-+..+.++.+ +.+ .+..+++++.+. ..+.|.-.-..+|-|+.=|+
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~----~ra-~g~~~~l~~~l~-~~~~d~~~~l~~a~i~~~l~ 93 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQ----FRA-HGLVKRLFKALS-DAPDDDILALATAAILYVLS 93 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHH----HHH-cCcHHHHHHHhc-cccchHHHHHHHHHHHHHHc
Confidence 4567888888885543 4444444444444444444433 222 266899999885 33444456666677777777
Q ss_pred ccCCCceEEecccchhHHhhhccccCC--CCCCCcccchhh---h----h------hc------cccccCcchhhhhHHH
Q 003365 411 GKKQNSLRVAGIPGAMESISSLLQTNR--SSGAATDEIGEK---K----I------IL------DHANYGFWTFNHLGLL 469 (826)
Q Consensus 411 ~~~~nsLrv~~iPGaiq~IsSLLdt~~--~~~~~~d~~~~~---~----~------~~------~~~~~~~~~L~~~GL~ 469 (826)
.+..+ ..+..-+...+.+..||.... +...+.+-.... + . .. +........=...+++
T Consensus 94 ~d~~~-~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 94 RDGLN-MHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred cCCcc-hhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 75322 233333678888888988321 111111100000 0 0 00 0000000123567899
Q ss_pred HHHHHhh-----cc---------ccccccccccCchhhhhcccc----cchhhhcccCCChhHHHHHHHHHHHHHHHhhC
Q 003365 470 ILKKLAR-----NH---------DNCGKIGNTRGLLPKIIDFTH----AEESLLRNEHDTSSQILTVRRSLQLVKMLAST 531 (826)
Q Consensus 470 IL~kLA~-----D~---------~NC~~I~~t~gLIsKII~ft~----~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~ 531 (826)
.|+.|.. .+ +|--+=-+.-|.+.+|++... ......+......+-...+...|++|-.-+-.
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 9999931 11 111111122245777776543 11111112222223344667788888765544
Q ss_pred ccchhhHHHHHHhhcchhhhhHHHHHccC-CCChHHHHHHHHHHHhccCCc-ccccccc-----chhhHHHHHHHHHhcC
Q 003365 532 TGITGEHLRREISEVVFTISNIRDILLHG-EKHPLLQKLGIDILTSLALEE-DATERIG-----GTGGMLKELFNILFKE 604 (826)
Q Consensus 532 ~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~-~~~~eLq~lAi~ILt~LA~D~-~~re~Ig-----~~~~iI~~L~~iFl~~ 604 (826)
..+....+-.- . ..-....+...+... ...++++.+++.++-||--|. +.-++++ +..++|..-+..++..
T Consensus 253 ~~~nq~~l~~~-~-~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~ 330 (361)
T PF07814_consen 253 SEENQSYLLSH-R-SSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSL 330 (361)
T ss_pred CccchHHHHHh-c-ccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccc
Confidence 33333222111 1 111222233333322 234566788999998986554 2222333 3333333333333332
Q ss_pred C--CCC-chhhHHHHHHHHHHHHhccCcch
Q 003365 605 G--MPE-NQNCVRIAAGEALAMLALDSKSN 631 (826)
Q Consensus 605 ~--~~~-~~~~lr~~AGeALamLa~es~~N 631 (826)
. .+. ..-...+.+=-+|.+|+..|+.|
T Consensus 331 ~~~~~~~~~~D~~IL~Lg~LINL~E~s~~n 360 (361)
T PF07814_consen 331 PNYVPEESSFDILILALGLLINLVEHSEAN 360 (361)
T ss_pred cccccccccchHHHHHHHhHHHheeeCccC
Confidence 1 111 12235566777788887777665
No 66
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=48.47 E-value=4e+02 Score=29.17 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=32.2
Q ss_pred HHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHh
Q 003365 338 GMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEML 388 (826)
Q Consensus 338 A~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML 388 (826)
|+-+|+|+...+++.++++|+.|+.+-+.. ++.+.+.|.++.
T Consensus 12 ~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~---------~~~~~~~L~~~~ 53 (262)
T PF14225_consen 12 AVACLESIHEHEFLEALSLLNKLLDKLDLD---------DPDVRDVLESSQ 53 (262)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcCCc---------hHHHHHHHHHhC
Confidence 677899999999999999999999866543 235556666554
No 67
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=46.50 E-value=5.3e+02 Score=29.98 Aligned_cols=249 Identities=21% Similarity=0.226 Sum_probs=131.6
Q ss_pred HHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCce
Q 003365 338 GMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSL 417 (826)
Q Consensus 338 A~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsL 417 (826)
.+.++.|++...+-.|--.+..+....+ +.+ . =.+..+..-|... ++.+|..|-+.++.++..
T Consensus 47 vi~l~~s~~~~~Krl~yl~l~~~~~~~~---~~~-~-----l~~n~l~kdl~~~---n~~~~~lAL~~l~~i~~~----- 109 (526)
T PF01602_consen 47 VIKLISSKDLELKRLGYLYLSLYLHEDP---ELL-I-----LIINSLQKDLNSP---NPYIRGLALRTLSNIRTP----- 109 (526)
T ss_dssp HHCTCSSSSHHHHHHHHHHHHHHTTTSH---HHH-H-----HHHHHHHHHHCSS---SHHHHHHHHHHHHHH-SH-----
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhcch---hHH-H-----HHHHHHHHhhcCC---CHHHHHHHHhhhhhhccc-----
Confidence 4566677777777777777777776543 211 0 1333344444433 368999999999998852
Q ss_pred EEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhh-ccccccccccccCchhhhhc
Q 003365 418 RVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLAR-NHDNCGKIGNTRGLLPKIID 496 (826)
Q Consensus 418 rv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~-D~~NC~~I~~t~gLIsKII~ 496 (826)
.-+|-.+..|-.+|..+.. ...--...-+-++.. |++.+. .. +++++..
T Consensus 110 --~~~~~l~~~v~~ll~~~~~-----------------------~VRk~A~~~l~~i~~~~p~~~~----~~-~~~~l~~ 159 (526)
T PF01602_consen 110 --EMAEPLIPDVIKLLSDPSP-----------------------YVRKKAALALLKIYRKDPDLVE----DE-LIPKLKQ 159 (526)
T ss_dssp --HHHHHHHHHHHHHHHSSSH-----------------------HHHHHHHHHHHHHHHHCHCCHH----GG-HHHHHHH
T ss_pred --chhhHHHHHHHHHhcCCch-----------------------HHHHHHHHHHHHHhccCHHHHH----HH-HHHHHhh
Confidence 0112233334444442210 111122333444433 544432 11 4555554
Q ss_pred ccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHh
Q 003365 497 FTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTS 576 (826)
Q Consensus 497 ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~ 576 (826)
.. .+ ....++..++.++..+ ..+.+... .-.+.+++.|..++ +..+|-+|..++++|+.
T Consensus 160 lL-------~d-----~~~~V~~~a~~~l~~i-~~~~~~~~------~~~~~~~~~L~~~l--~~~~~~~q~~il~~l~~ 218 (526)
T PF01602_consen 160 LL-------SD-----KDPSVVSAALSLLSEI-KCNDDSYK------SLIPKLIRILCQLL--SDPDPWLQIKILRLLRR 218 (526)
T ss_dssp HT-------TH-----SSHHHHHHHHHHHHHH-HCTHHHHT------THHHHHHHHHHHHH--TCCSHHHHHHHHHHHTT
T ss_pred hc-------cC-----CcchhHHHHHHHHHHH-ccCcchhh------hhHHHHHHHhhhcc--cccchHHHHHHHHHHHh
Confidence 33 11 1235567788888777 22221111 11233445555555 33458889889999999
Q ss_pred ccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhH
Q 003365 577 LALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVR 654 (826)
Q Consensus 577 LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r 654 (826)
++-........ ..++..+...+-+ ....+...|..++..+..... +....++.|..+|.+ +..|
T Consensus 219 ~~~~~~~~~~~---~~~i~~l~~~l~s-----~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr 284 (526)
T PF01602_consen 219 YAPMEPEDADK---NRIIEPLLNLLQS-----SSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVR 284 (526)
T ss_dssp STSSSHHHHHH---HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHH
T ss_pred cccCChhhhhH---HHHHHHHHHHhhc-----cccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhe
Confidence 87544332210 2344555543321 233466677777776643222 222456666666664 4578
Q ss_pred HHHHHHHHHHhhhc
Q 003365 655 VNAARILRNLCASS 668 (826)
Q Consensus 655 ~~AA~IL~nLC~~s 668 (826)
+.|.+-|.+++...
T Consensus 285 ~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 285 YIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHHCCHC
T ss_pred hhHHHHHHHhhccc
Confidence 88888888888755
No 68
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=45.45 E-value=3.5e+02 Score=27.81 Aligned_cols=95 Identities=23% Similarity=0.311 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHHHHhccCcch---------HHHHHhh------------hhHHHHHHhhccchhHHHHHHHHHHHhhhc
Q 003365 610 QNCVRIAAGEALAMLALDSKSN---------CHRILKL------------KVVDKLVETLAVPLVRVNAARILRNLCASS 668 (826)
Q Consensus 610 ~~~lr~~AGeALamLa~es~~N---------c~~ILke------------~vi~~Lv~mL~d~~~r~~AA~IL~nLC~~s 668 (826)
=|.+|..||++|+.+......+ ...|+.. .....++.+|.-+.|++. +|.-|+.-.
T Consensus 20 iDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~~~y~~~---ll~Glv~S~ 96 (193)
T PF12612_consen 20 IDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLLDLPEYRYS---LLSGLVVSA 96 (193)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHhccHHHHHH---HHhHHHhcC
Confidence 3568888888888876322121 1112211 456777777776777665 788888755
Q ss_pred ccchhhh-hhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHh
Q 003365 669 GADCFNQ-LRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVF 709 (826)
Q Consensus 669 ~~e~~~~-Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc 709 (826)
+. ..+. -+.-..++-..+..+ +.....++.++.--.+|.
T Consensus 97 G~-~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il 136 (193)
T PF12612_consen 97 GG-LTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSIL 136 (193)
T ss_pred CC-CchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHH
Confidence 54 1112 233455555555444 344445555555555555
No 69
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=43.40 E-value=80 Score=38.17 Aligned_cols=381 Identities=18% Similarity=0.177 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHhhhcCCcccccccchhHHHH---HhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHH
Q 003365 309 SIRRFFYDAYSKCVNGSIFDGLKMDMVIFGM---ELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFV 385 (826)
Q Consensus 309 sv~~Y~~~a~~~C~~g~vf~~~~~~LVtFA~---dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi 385 (826)
....|++.++.+|..--+..-.+-.-..|.- +++++.+..++-.+.-.+..|++...-. .+ ...+.+..|.
T Consensus 107 tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~--~~----~~~~~l~~l~ 180 (569)
T KOG1242|consen 107 TPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIE--SL----KEFGFLDNLS 180 (569)
T ss_pred CCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHh--hh----hhhhHHHHHH
Confidence 4678999999999987665544444455543 3456667777777777777777643100 00 0112233333
Q ss_pred HHhCCC-CcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhh
Q 003365 386 EMLNWK-DPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFN 464 (826)
Q Consensus 386 ~ML~wt-s~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~ 464 (826)
.-+.=+ +..++|.-..|...... .|.-..=|+-++..-++|+..++......+ -.
T Consensus 181 ~ai~dk~~~~~re~~~~a~~~~~~-------~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~-----------------Aa 236 (569)
T KOG1242|consen 181 KAIIDKKSALNREAALLAFEAAQG-------NLGPPFEPYIVPILPSILTNFGDKINKVRE-----------------AA 236 (569)
T ss_pred HHhcccchhhcHHHHHHHHHHHHH-------hcCCCCCchHHhhHHHHHHHhhccchhhhH-----------------HH
Confidence 333212 22223322222222221 233223377777777777766442110000 00
Q ss_pred hhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHh
Q 003365 465 HLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREIS 544 (826)
Q Consensus 465 ~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS 544 (826)
.....++. +|.-......+++..+.= +.. ..|+. -..|++++.-++..- -.+++
T Consensus 237 ~~a~kai~-------~~~~~~aVK~llpsll~~-------l~~----~kWrt-K~aslellg~m~~~a-------p~qLs 290 (569)
T KOG1242|consen 237 VEAAKAIM-------RCLSAYAVKLLLPSLLGS-------LLE----AKWRT-KMASLELLGAMADCA-------PKQLS 290 (569)
T ss_pred HHHHHHHH-------HhcCcchhhHhhhhhHHH-------HHH----Hhhhh-HHHHHHHHHHHHHhc-------hHHHH
Confidence 11111111 233333333444444421 111 13432 256888887665542 12333
Q ss_pred hc-chhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHH-HHHHHHHH
Q 003365 545 EV-VFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVR-IAAGEALA 622 (826)
Q Consensus 545 ~~-~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr-~~AGeALa 622 (826)
-. |.++.-+-++|-|.. +|.|+.++++|+++.-=.+ .-.++.+|..|++++-+..-... ..+. .-+++..+
T Consensus 291 ~~lp~iiP~lsevl~DT~--~evr~a~~~~l~~~~svid----N~dI~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~ 363 (569)
T KOG1242|consen 291 LCLPDLIPVLSEVLWDTK--PEVRKAGIETLLKFGSVID----NPDIQKIIPTLLDALADPSCYTP-ECLDSLGATTFVA 363 (569)
T ss_pred HHHhHhhHHHHHHHccCC--HHHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHhcCcccchH-HHHHhhcceeeee
Confidence 32 677788888887754 9999999999999842111 12257788999999977641110 0000 00111100
Q ss_pred HHhccCcchHHHHHhhhhHHHHHHhhc--cchhHHHHHHHHHHHhhhccc---------chhhhhhh-HHhHHHHHHH--
Q 003365 623 MLALDSKSNCHRILKLKVVDKLVETLA--VPLVRVNAARILRNLCASSGA---------DCFNQLRG-VTAAAPTILK-- 688 (826)
Q Consensus 623 mLa~es~~Nc~~ILke~vi~~Lv~mL~--d~~~r~~AA~IL~nLC~~s~~---------e~~~~Lk~-l~~alp~VL~-- 688 (826)
-.. .-..+| .+.-|..-+. +..-+-.+|.|-.|||.--.| +++..|++ +.+++|+|=.
T Consensus 364 ~V~----~psLal----mvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~va 435 (569)
T KOG1242|consen 364 EVD----APSLAL----MVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVA 435 (569)
T ss_pred eec----chhHHH----HHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHH
Confidence 000 000111 1122222222 234445778888888874422 11223444 3444555421
Q ss_pred -----HHhch------hh---hHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHH
Q 003365 689 -----AITSE------DY---KLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRR 754 (826)
Q Consensus 689 -----~I~~~------e~---k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR 754 (826)
.+... ++ .++|..=+-.+-.|+...++++..++.+.++. .+-+-+.+++. +..-.-..|+||-
T Consensus 436 arAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~--~~~~~~~~~~a-~~~~~~~~~~~~d 512 (569)
T KOG1242|consen 436 ARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVE--KVEDILPEILA-NASSVLIDERIRD 512 (569)
T ss_pred HHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccch--HHHHHHHHHHH-HHhhccchhhhcc
Confidence 11110 11 12333323333345555556777777766653 34444555544 4444555677776
Q ss_pred HHHHHHHHH
Q 003365 755 YAIELAIWM 763 (826)
Q Consensus 755 ~~vE~~I~m 763 (826)
-.+++++++
T Consensus 513 g~~~~~~~l 521 (569)
T KOG1242|consen 513 GVIWLFYLL 521 (569)
T ss_pred Ceeehhhcc
Confidence 655555544
No 70
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=42.98 E-value=2.1e+02 Score=24.46 Aligned_cols=81 Identities=25% Similarity=0.359 Sum_probs=52.0
Q ss_pred hHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcch
Q 003365 552 NIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSN 631 (826)
Q Consensus 552 NL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~N 631 (826)
.|.+.|.. ..++..|.-|+..|.++ +. +..+..|+..+ .+ ++..+|..|.+||..+-
T Consensus 3 ~L~~~l~~-~~~~~vr~~a~~~L~~~----------~~-~~~~~~L~~~l-~d----~~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 3 ALLQLLQN-DPDPQVRAEAARALGEL----------GD-PEAIPALIELL-KD----EDPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHT-SSSHHHHHHHHHHHHCC----------TH-HHHHHHHHHHH-TS----SSHHHHHHHHHHHHCCH------
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHc----------CC-HhHHHHHHHHH-cC----CCHHHHHHHHHHHHHhC------
Confidence 34455533 34588999999999855 21 24567788866 22 33468999999999873
Q ss_pred HHHHHhhhhHHHHHHhhccc---hhHHHHHHH
Q 003365 632 CHRILKLKVVDKLVETLAVP---LVRVNAARI 660 (826)
Q Consensus 632 c~~ILke~vi~~Lv~mL~d~---~~r~~AA~I 660 (826)
..+.++.|..++.++ ..|..|+.-
T Consensus 60 -----~~~~~~~L~~~l~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 60 -----DPEAIPALIKLLQDDDDEVVREAAAEA 86 (88)
T ss_dssp -----HHHTHHHHHHHHTC-SSHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHcCCCcHHHHHHHHhh
Confidence 125788888888763 234555543
No 71
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=41.57 E-value=6e+02 Score=29.17 Aligned_cols=205 Identities=13% Similarity=0.151 Sum_probs=100.9
Q ss_pred hhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcc
Q 003365 548 FTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALD 627 (826)
Q Consensus 548 f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~e 627 (826)
..-+.+.+||++.-...+||=...=|+=.|.....--|.|..+-..|..|+++ ++..|-|..-.|+..
T Consensus 191 tcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~i------------Vk~~~keKV~Rlc~~ 258 (432)
T COG5231 191 TCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAI------------VKERAKEKVLRLCCG 258 (432)
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Confidence 33445777877655556677666555556655555445555555555666553 233444544444311
Q ss_pred CcchHHHHHhh--hhHHHHHHhhccchhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHH---
Q 003365 628 SKSNCHRILKL--KVVDKLVETLAVPLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMI--- 702 (826)
Q Consensus 628 s~~Nc~~ILke--~vi~~Lv~mL~d~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~li--- 702 (826)
=..||-. |. ++|..+. .++| .-+ +.-.+++ ..|+..|..+++.. ++.+++++.|+|-.+=
T Consensus 259 Iv~n~~d--K~pK~~I~~~l-ll~~-~~k-~vq~L~e--rkysDEel~~di~~--------i~s~l~~~~k~l~~fD~Y~ 323 (432)
T COG5231 259 IVANVLD--KSPKGYIFSPL-LLND-ISK-CVQVLLE--RKYSDEELVIDIER--------IRSRLVQNTKKLCIFDNYL 323 (432)
T ss_pred HHHHHhc--ccccchhhhhH-hhcc-hHH-HHHHHHh--cCCChHHHHHHHHH--------HHHHHHhhhhhhhHHHHHH
Confidence 1112211 11 2222211 0111 000 0001111 12444454444433 3445666777665552
Q ss_pred -HhHHHHhhcCCc---hhh----HHHHHhcCCChHHHHHHHHHHHhhcCCCCC-------------CCChHHHHHH----
Q 003365 703 -GLAAQVFRFMTR---EES----SNIFERAGIMEIDLANTLVQILRKYQHPPI-------------KVPRIRRYAI---- 757 (826)
Q Consensus 703 -gLa~qIc~~i~~---edf----a~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~-------------~~prIRR~~v---- 757 (826)
-|-+-+..+-++ +|| .++|...+ .+++|+|+++|..|...+. -.|-++-++.
T Consensus 324 ~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdn---y~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~ 400 (432)
T COG5231 324 NELDSGRLEWSPYHHKKDFWSTNLDMLIKDN---YEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV 400 (432)
T ss_pred HHHhhCcccCCCcccccCchhhhHHHHhhhh---HHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence 233344444433 566 34454433 4799999999997764322 2477776665
Q ss_pred -HHHHHHHhcCCccHHHHHhhcHHHHHHHHHHH
Q 003365 758 -ELAIWMMRDKATNVHIFKNLGLEMVLESVIET 789 (826)
Q Consensus 758 -E~~I~mm~~~~~y~~~f~e~~m~eaL~~v~~T 789 (826)
|.++-+|.|+..-++. |||+.+.--
T Consensus 401 k~~im~L~nh~d~~Vkf-------eAl~a~q~~ 426 (432)
T COG5231 401 KEIIMNLINHDDDDVKF-------EALQALQTC 426 (432)
T ss_pred HHHHHHHhcCCCchhhH-------HHHHHHHHH
Confidence 3556667665544443 566655433
No 72
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.52 E-value=8.6e+02 Score=30.97 Aligned_cols=107 Identities=19% Similarity=0.204 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHhhCccchhhHHHHHHhh--cchhhhhHHHHHc-cCCCChHHHHHHHHHHHhccCCccccccccch
Q 003365 514 QILTVRRSLQLVKMLASTTGITGEHLRREISE--VVFTISNIRDILL-HGEKHPLLQKLGIDILTSLALEEDATERIGGT 590 (826)
Q Consensus 514 ~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~--~~f~lsNL~~IL~-~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~ 590 (826)
-++++..=.+.|+.++..+=..+ +.++. .||+=--+-.+|+ -++.+++-...--+||++.|-..++..++|..
T Consensus 217 fr~l~~~lV~iLk~l~~~~yspe----ydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnA 292 (866)
T KOG1062|consen 217 FRDLVPSLVKILKQLTNSGYSPE----YDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNA 292 (866)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCc----cCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhH
Confidence 45567777888888876643334 45554 3776555554444 23345667777789999999999999998875
Q ss_pred --hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcch
Q 003365 591 --GGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSN 631 (826)
Q Consensus 591 --~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~N 631 (826)
-.-|+..|+|.-+. .+|..|.-.|+.--..+.+|
T Consensus 293 ILYE~V~TI~~I~~~~-------~LrvlainiLgkFL~n~d~N 328 (866)
T KOG1062|consen 293 ILYECVRTIMDIRSNS-------GLRVLAINILGKFLLNRDNN 328 (866)
T ss_pred HHHHHHHHHHhccCCc-------hHHHHHHHHHHHHhcCCccc
Confidence 23346666655443 39999999999876655555
No 73
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=40.32 E-value=65 Score=27.75 Aligned_cols=47 Identities=28% Similarity=0.533 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCC
Q 003365 377 NLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNR 437 (826)
Q Consensus 377 S~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~ 437 (826)
+++++..|++++. ..|..+|..|++.+.++.. |.+++.+..++..+.
T Consensus 29 ~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~ 75 (88)
T PF13646_consen 29 DPEAIPALIELLK---DEDPMVRRAAARALGRIGD-----------PEAIPALIKLLQDDD 75 (88)
T ss_dssp HHHHHHHHHHHHT---SSSHHHHHHHHHHHHCCHH-----------HHTHHHHHHHHTC-S
T ss_pred CHhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCC
Confidence 4688999999993 3457899999999998753 678888888777653
No 74
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=39.90 E-value=5.7e+02 Score=30.59 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=91.8
Q ss_pred hhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHH-HHHHhc
Q 003365 548 FTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEA-LAMLAL 626 (826)
Q Consensus 548 f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeA-LamLa~ 626 (826)
.++-++-+||++.+ +.--+++|..||+...-...+|-. -.++..|.+.+++=-+. ++...+ .|.|+ +-.|++
T Consensus 329 ~iL~~l~EvL~d~~-~~~~k~laLrvL~~ml~~Q~~~l~-DstE~ai~K~Leaa~ds----~~~v~~-~Aeed~~~~las 401 (516)
T KOG2956|consen 329 EILLLLLEVLSDSE-DEIIKKLALRVLREMLTNQPARLF-DSTEIAICKVLEAAKDS----QDEVMR-VAEEDCLTTLAS 401 (516)
T ss_pred HHHHHHHHHHccch-hhHHHHHHHHHHHHHHHhchHhhh-chHHHHHHHHHHHHhCC----chhHHH-HHHHHHHHHHHh
Confidence 35677889998864 367899999999877554444422 44556667777654332 222344 44444 456666
Q ss_pred cCcchHHHHHhhhhHHHHHHh-hccchhHH-HHHHHHHHHhhhcc-cchhhhhhhHHhHHHHHHHHHhchhhh-HHHHHH
Q 003365 627 DSKSNCHRILKLKVVDKLVET-LAVPLVRV-NAARILRNLCASSG-ADCFNQLRGVTAAAPTILKAITSEDYK-LQEVMI 702 (826)
Q Consensus 627 es~~Nc~~ILke~vi~~Lv~m-L~d~~~r~-~AA~IL~nLC~~s~-~e~~~~Lk~l~~alp~VL~~I~~~e~k-~LE~li 702 (826)
..+--|-.- +.-. |.+|+-+- .+-+-+..||.--. +|+ +.-+.+.+|.|+++--+.+.. .-++.-
T Consensus 402 ~~P~~~I~~--------i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL---~~ll~diaP~~iqay~S~SS~VRKtaVf 470 (516)
T KOG2956|consen 402 HLPLQCIVN--------ISPLILTADEPRAVAVIKMLTKLFERLSAEEL---LNLLPDIAPCVIQAYDSTSSTVRKTAVF 470 (516)
T ss_pred hCchhHHHH--------HhhHHhcCcchHHHHHHHHHHHHHhhcCHHHH---HHhhhhhhhHHHHHhcCchHHhhhhHHH
Confidence 665544332 2221 22222233 33336788887433 332 222788999999887666543 345666
Q ss_pred HhHHHHhhcCCchhhHHHHHhc
Q 003365 703 GLAAQVFRFMTREESSNIFERA 724 (826)
Q Consensus 703 gLa~qIc~~i~~edfa~~l~~~ 724 (826)
+|.+ |.+.+..+++...|+.-
T Consensus 471 CLVa-mv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 471 CLVA-MVNRVGMEEMEPHLEQL 491 (516)
T ss_pred hHHH-HHHHHhHHhhhhHhhhc
Confidence 7765 44444457888888753
No 75
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=39.41 E-value=94 Score=33.87 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhccCCccccccccchhhH--HHHHHHH---HhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhh-
Q 003365 565 LLQKLGIDILTSLALEEDATERIGGTGGM--LKELFNI---LFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKL- 638 (826)
Q Consensus 565 eLq~lAi~ILt~LA~D~~~re~Ig~~~~i--I~~L~~i---Fl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke- 638 (826)
-=|++|.|+|..|.+-+..-+-|-+|+.+ +.+|.+. ++..+ .+...|--|---|..|+..++.-|..|-.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~---e~~v~REfAvvlL~~La~~~~~~~r~iA~q~ 215 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMR---EDQVCREFAVVLLSNLAQGDEAAARAIAMQK 215 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccc---cchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 45899999999999877777777776432 2333333 34432 233477778888899999999999888776
Q ss_pred hhHHHHHHhhcc
Q 003365 639 KVVDKLVETLAV 650 (826)
Q Consensus 639 ~vi~~Lv~mL~d 650 (826)
..|..|+..|+|
T Consensus 216 ~~i~~Li~FiE~ 227 (257)
T PF12031_consen 216 PCISHLIAFIED 227 (257)
T ss_pred chHHHHHHHHHH
Confidence 789999998876
No 76
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=37.62 E-value=63 Score=25.86 Aligned_cols=48 Identities=40% Similarity=0.422 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHhh---hhHHHHHHhhcc--chhHHHHHHHHHHH
Q 003365 613 VRIAAGEALAMLALDSKSNCHRILKL---KVVDKLVETLAV--PLVRVNAARILRNL 664 (826)
Q Consensus 613 lr~~AGeALamLa~es~~Nc~~ILke---~vi~~Lv~mL~d--~~~r~~AA~IL~nL 664 (826)
+|..|..+|+.++.. |...++. +++..|+.+|.| +..|..|+.-|.||
T Consensus 3 vR~~A~~aLg~l~~~----~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAAAWALGRLAEG----CPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHCTTTT----THHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhHhcc----cHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 567788888876533 3333333 788999999977 46677777777654
No 77
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.18 E-value=4.1e+02 Score=30.40 Aligned_cols=136 Identities=18% Similarity=0.172 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHH
Q 003365 519 RRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELF 598 (826)
Q Consensus 519 ~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~ 598 (826)
..||..|..|+-..-. =..+.++-++..=+. -|++. +.++|++|+++++..+-+-.-.|+----.+..+.|+
T Consensus 101 e~ald~Le~lve~iDn-----Andl~~~ggl~~ll~-~l~~~--~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 101 EDALDNLEELVEDIDN-----ANDLISLGGLVPLLG-YLENS--DAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred HHHHHHHHHHHHhhhh-----HHhHhhccCHHHHHH-HhcCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 5788888888866332 246666655544343 55554 489999999999988765544443221223568999
Q ss_pred HHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc----chhHHHHHHHHHHHhh
Q 003365 599 NILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV----PLVRVNAARILRNLCA 666 (826)
Q Consensus 599 ~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d----~~~r~~AA~IL~nLC~ 666 (826)
.+|-.+ +....|..|==|+..|-...+.--...++.+-..-|...+.+ .+.+..|+.++..|-.
T Consensus 173 ~~ls~~----~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 173 KILSSD----DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHccC----CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 998744 233466666666666666666555666666445666666654 4678888988888865
No 78
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=34.83 E-value=1.3e+02 Score=36.51 Aligned_cols=128 Identities=22% Similarity=0.228 Sum_probs=81.2
Q ss_pred hhhhhHHHHHccC--CCChHHHHHHHHHHHhccCCccccccccc-hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHH
Q 003365 548 FTISNIRDILLHG--EKHPLLQKLGIDILTSLALEEDATERIGG-TGGMLKELFNILFKEGMPENQNCVRIAAGEALAML 624 (826)
Q Consensus 548 f~lsNL~~IL~~~--~~~~eLq~lAi~ILt~LA~D~~~re~Ig~-~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamL 624 (826)
..++=|.-||+.+ +.+.+.++.++.|.-|++---+-++++.. .+.++..|-+++.... + ..|-.|..||..|
T Consensus 368 psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~-P----EvR~vaarAL~~l 442 (569)
T KOG1242|consen 368 PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAV-P----EVRAVAARALGAL 442 (569)
T ss_pred hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCC-h----hHHHHHHHHHHHH
Confidence 5666777788644 56678889999999999754433344332 2445555555554431 2 2788899999655
Q ss_pred hccCcchHHHHHhhhhHHHHHHhhcc---chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHH
Q 003365 625 ALDSKSNCHRILKLKVVDKLVETLAV---PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAI 690 (826)
Q Consensus 625 a~es~~Nc~~ILke~vi~~Lv~mL~d---~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I 690 (826)
- +..+|-.. .+.+..|.+.+.+ ...+..+|.-|...|.+.+.++. .+.+|+.+..+
T Consensus 443 ~-e~~g~~~f---~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~------~~~~~~~~a~~ 501 (569)
T KOG1242|consen 443 L-ERLGEVSF---DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV------EDILPEILANA 501 (569)
T ss_pred H-HHHHhhcc---cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH------HHHHHHHHHHH
Confidence 2 32222221 2566777777765 56899999999999998877663 34445544443
No 79
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=34.65 E-value=56 Score=23.55 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=21.4
Q ss_pred HHHHHHhhcc--chhHHHHHHHHHHHhhh
Q 003365 641 VDKLVETLAV--PLVRVNAARILRNLCAS 667 (826)
Q Consensus 641 i~~Lv~mL~d--~~~r~~AA~IL~nLC~~ 667 (826)
+..+.+++.| ++.|..||.-|.++|.|
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 5667788888 57899999999999875
No 80
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=34.51 E-value=6.5e+02 Score=27.53 Aligned_cols=121 Identities=12% Similarity=0.150 Sum_probs=71.3
Q ss_pred hHHHHHHhhcc--chhHHHHHHHHHHHhhhcccchhhhhhh--HHhHHHHHHHHHh---------chhhhHHHHHHHhHH
Q 003365 640 VVDKLVETLAV--PLVRVNAARILRNLCASSGADCFNQLRG--VTAAAPTILKAIT---------SEDYKLQEVMIGLAA 706 (826)
Q Consensus 640 vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e~~~~Lk~--l~~alp~VL~~I~---------~~e~k~LE~ligLa~ 706 (826)
++.-+..+++| +.+|..+..+|.++..+..+.....|+. +.+.+-..|...+ ++.-+++++...-..
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 45666677777 7999999999999998766533111221 3333333333222 233355665555555
Q ss_pred HHhhcCCchhhHHHHHhcC-CChHHHHHHHHHHHhhcCCCCCC--CChHHHHHHHHHHHHHhcCC
Q 003365 707 QVFRFMTREESSNIFERAG-IMEIDLANTLVQILRKYQHPPIK--VPRIRRYAIELAIWMMRDKA 768 (826)
Q Consensus 707 qIc~~i~~edfa~~l~~~~-i~~~~fv~kLv~iL~~n~~Pt~~--~prIRR~~vE~~I~mm~~~~ 768 (826)
++++... +..+ -....+.+-|-+.+=.+..+... .|++|.+.+++..-++++=|
T Consensus 200 ~L~~~~~--------~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG 256 (282)
T PF10521_consen 200 SLLKTQE--------NDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG 256 (282)
T ss_pred HHHHhhc--------cCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence 5555431 1111 12234556666733446666666 99999999999888886644
No 81
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=32.96 E-value=2.9e+02 Score=30.32 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHHHhcc-CCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhH
Q 003365 563 HPLLQKLGIDILTSLA-LEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVV 641 (826)
Q Consensus 563 ~~eLq~lAi~ILt~LA-~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi 641 (826)
...+.-.|.++|..+. ++++.|.-.+. +.-++.|++ |+... +...+...+=.+|..+-.+++.|+...=+-+-+
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~-LL~~~---~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl 178 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLD-LLSPS---NPPAIQSACLDTLVCILLDSPENQRDFEELNGL 178 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHH-HhccC---CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCH
Confidence 4455666778888776 46666655443 344477777 44321 233467778888887778999999866444778
Q ss_pred HHHHHhhcc-chhHHHHHHHHHHHhhhcccch
Q 003365 642 DKLVETLAV-PLVRVNAARILRNLCASSGADC 672 (826)
Q Consensus 642 ~~Lv~mL~d-~~~r~~AA~IL~nLC~~s~~e~ 672 (826)
..++.++.+ .--+.+=.++++=|..|-.+|.
T Consensus 179 ~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~ 210 (257)
T PF08045_consen 179 STVCSLLKSKSTDRELRLKCIEFLYFYLMPET 210 (257)
T ss_pred HHHHHHHccccccHHHhHHHHHHHHHHHcccC
Confidence 888888876 3445666888899988887764
No 82
>TIGR03474 incFII_RepA incFII family plasmid replication initiator RepA. Members of this protein are the plasmid replication initiator RepA of incFII (plasmid incompatibility group F-II) plasmids. R1 and R100 are plasmids in this group. Immediately upstream of repA is found tap, a leader peptide of about 24 amino acids, often not assigned as a gene in annotated plasmid sequences. Note that other, non-homologous plasmid replication proteins share the gene symbol (repA) and similar names (plasmid replication protein RepA).
Probab=32.89 E-value=47 Score=35.79 Aligned_cols=40 Identities=30% Similarity=0.406 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHhhccC---CCchhHHHHH
Q 003365 269 ALAEAMLFLTEKAYWEWNVIYCKLLEEVNKECDL---GPSGIISIRR 312 (826)
Q Consensus 269 vL~QgvLy~~a~~~~~f~~~~~rll~~v~~~~~~---g~~G~~sv~~ 312 (826)
|+.||+||.+- .-+-....+++..+++||| ...|-+||.+
T Consensus 66 A~lqAMlyh~N----i~S~~V~aSIeqLadeCGLST~S~aGnkSITR 108 (275)
T TIGR03474 66 ALLQGMCFHYD----PLANRVQRSITNLAIECGLATESKSGNLSITR 108 (275)
T ss_pred HHHHHHHHHcC----chhhHHHHHHHHHHHHhCCcccCcCCCchhHH
Confidence 78999999873 4456667788999999999 4567777655
No 83
>PRK13750 replication protein; Provisional
Probab=32.76 E-value=45 Score=36.17 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHhhccC---CCchhHHHHH
Q 003365 269 ALAEAMLFLTEKAYWEWNVIYCKLLEEVNKECDL---GPSGIISIRR 312 (826)
Q Consensus 269 vL~QgvLy~~a~~~~~f~~~~~rll~~v~~~~~~---g~~G~~sv~~ 312 (826)
|+.||+||.+- .-+-....++...+++||| ...|-+||.+
T Consensus 74 A~lqaMlyh~N----i~S~~V~aSIeqLadeCGLST~S~aGnkSITR 116 (285)
T PRK13750 74 ALLQGLCFHYD----PLANRVQCSITTLAIECGLATESAAGKLSITR 116 (285)
T ss_pred HHHHHHHHHcC----cchhHHHHHHHHHHHHhCCcccCcCCCcchHH
Confidence 78999999873 3455667788999999999 4567777655
No 84
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=31.09 E-value=87 Score=36.49 Aligned_cols=74 Identities=24% Similarity=0.230 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhccchhHHHHHHHHHHHhh---------hcccch--hhhhhhHH
Q 003365 612 CVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILRNLCA---------SSGADC--FNQLRGVT 680 (826)
Q Consensus 612 ~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d~~~r~~AA~IL~nLC~---------~s~~e~--~~~Lk~l~ 680 (826)
.++..|+|-|-.|+.+| ..+|+|- . .|. +||-+|.+.-. |+.+|- +.+-|+.+
T Consensus 388 ~~K~vaAEfLFvLCKes---V~rmIKY---------t---GyG-naAGllA~rGll~~~r~e~~~Se~EDtdTeeYkq~k 451 (532)
T KOG4464|consen 388 SVKDVAAEFLFVLCKES---VNRMIKY---------T---GYG-NAAGLLAARGLLAGGRQEKHYSEDEDTDTEEYKQAK 451 (532)
T ss_pred hhhhhhHHHHHHHhhcc---hhhhhhh---------c---ccc-cHHHHHHhhhhhccCCCccCcccccccchHHHHhhc
Confidence 36778999999997654 4444443 1 111 45555554432 233322 23345566
Q ss_pred hHHHHHHHHH----------hchhhhHHHHH
Q 003365 681 AAAPTILKAI----------TSEDYKLQEVM 701 (826)
Q Consensus 681 ~alp~VL~~I----------~~~e~k~LE~l 701 (826)
+.+-.|...| |++|.|+.||+
T Consensus 452 ~sINpVtG~ve~~~~n~ld~mtEEQKEyEAM 482 (532)
T KOG4464|consen 452 DSINPVTGAVEESDPNPLDGMTEEQKEYEAM 482 (532)
T ss_pred ccCCccccccCCCCCChhhhhhhHHHHHHHH
Confidence 6666666655 67888999984
No 85
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.03 E-value=6.4e+02 Score=30.03 Aligned_cols=220 Identities=17% Similarity=0.267 Sum_probs=104.6
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCC-----Ccccchhhhhhc
Q 003365 379 SVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGA-----ATDEIGEKKIIL 453 (826)
Q Consensus 379 ~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~-----~~d~~~~~~~~~ 453 (826)
..++.|++.||-.+ ++|--.--...-+|... ++-=.+--||=..|-+|.|..--+.+ .-||. .+
T Consensus 125 n~V~slL~LLgHeN---tDI~iavvdLLqELTD~---Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEs-----vk 193 (536)
T KOG2734|consen 125 NAVQSLLELLGHEN---TDIAIAVVDLLQELTDE---DVLYESEEGAEVLIDALVDGQVLALLVQNVERLDES-----VK 193 (536)
T ss_pred ccHHHHHHHhcCCC---chhHHHHHHHHHHhhhh---cccccccccHHHHHHHHHhccHHHHHHHHHHHhhhc-----ch
Confidence 56777777777433 45544444444455543 22223334666666666664321000 00010 01
Q ss_pred cccccCcchhhhhHHHHHHHHhh-ccccccccccccCchh----hhhcccccchhhhcccCCChhHHHHHHHHHHHHHHH
Q 003365 454 DHANYGFWTFNHLGLLILKKLAR-NHDNCGKIGNTRGLLP----KIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKML 528 (826)
Q Consensus 454 ~~~~~~~~~L~~~GL~IL~kLA~-D~~NC~~I~~t~gLIs----KII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rL 528 (826)
++.+ =.+.-|.++++|+. ++.-|.+++.- ||++ ++.+=++++. -+ --+.+++.-+
T Consensus 194 eea~-----gv~~~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~a-----------Nk---~YasEiLail 253 (536)
T KOG2734|consen 194 EEAD-----GVHNTLAVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDA-----------NK---QYASEILAIL 253 (536)
T ss_pred hhhh-----hhHHHHHHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcch-----------hH---HHHHHHHHHH
Confidence 1111 14556889999997 99999888776 6543 2333222211 00 1133444444
Q ss_pred hhCccchhhHHHHHHhhcchhhhhHHHHHccCCCC---hHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCC
Q 003365 529 ASTTGITGEHLRREISEVVFTISNIRDILLHGEKH---PLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEG 605 (826)
Q Consensus 529 as~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~---~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~ 605 (826)
-.+.++ ...+.-++-.+--+++-|.--=.++..+ +|+.+.--+-|-.+-|....|+..-.-+++ .||...+...
T Consensus 254 lq~s~e-~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGl--qLm~Lmlr~K 330 (536)
T KOG2734|consen 254 LQNSDE-NRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGL--QLMNLMLREK 330 (536)
T ss_pred hccCch-hhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccH--HHHHHHHHHH
Confidence 444333 3444444544545555555443444333 334444444444444566666554443333 3333333321
Q ss_pred CCCchhhHHHHHHHHHHHHh--ccCcchHHHHHh
Q 003365 606 MPENQNCVRIAAGEALAMLA--LDSKSNCHRILK 637 (826)
Q Consensus 606 ~~~~~~~lr~~AGeALamLa--~es~~Nc~~ILk 637 (826)
...|..|-.+|--.. -++..||.....
T Consensus 331 -----k~sr~SalkvLd~am~g~~gt~~C~kfVe 359 (536)
T KOG2734|consen 331 -----KVSRGSALKVLDHAMFGPEGTPNCNKFVE 359 (536)
T ss_pred -----HHhhhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 123444555564333 355689987643
No 86
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=29.42 E-value=6.9e+02 Score=31.71 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=46.1
Q ss_pred chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCch
Q 003365 651 PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTRE 715 (826)
Q Consensus 651 ~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~e 715 (826)
.+.|+++|.-|.-|...+.+--.. .....+-..-+.|-...||.|.+|+--..-+|.+|+++
T Consensus 567 qkVR~itAlalsalaeaa~Pygie---~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~e 628 (1172)
T KOG0213|consen 567 QKVRTITALALSALAEAATPYGIE---QFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAE 628 (1172)
T ss_pred hhhhhHHHHHHHHHHHhcCCcchH---HHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHH
Confidence 478999999999998866652111 13344444457788889999999999999999999775
No 87
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=29.31 E-value=1.1e+03 Score=29.43 Aligned_cols=139 Identities=19% Similarity=0.147 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhc-----cCCccccccccc
Q 003365 515 ILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSL-----ALEEDATERIGG 589 (826)
Q Consensus 515 ~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~L-----A~D~~~re~Ig~ 589 (826)
..++-.+.-.+..+... .|+.+|.+|.+. ++++-+-++..+. +.....-|-.-|.++ |++.+ -..
T Consensus 348 ~~i~l~e~~i~~~~~~~---~~i~~~k~~l~~-~t~~~l~~~~~~k--d~~~~aaa~l~~~s~srsV~aL~tg-~~~--- 417 (678)
T KOG1293|consen 348 RLILLNETLILNHLEYG---LEISLKKEILET-TTESHLMCLPPIK--DHDFVAAALLCLKSFSRSVSALRTG-LKR--- 417 (678)
T ss_pred hHHHhhhhhhhhhhhhh---cchhHHHHHHHH-HHHHHHccccccc--cHHHHHHHHHHHHHHHHHHHHHHcC-Ccc---
Confidence 34444455455554433 238888888877 5554444443322 122222222333333 22222 111
Q ss_pred hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhh
Q 003365 590 TGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCAS 667 (826)
Q Consensus 590 ~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~ 667 (826)
-.++..|++..-+. +..+.+.+--|+.+|.+|=.+=-..+++-+.|+.|++++.+ ..-|..+-..|||+--.
T Consensus 418 -~dv~~plvqll~dp-----~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~ 491 (678)
T KOG1293|consen 418 -NDVAQPLVQLLMDP-----EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFN 491 (678)
T ss_pred -chhHHHHHHHhhCc-----chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence 23455666644221 23467778889999999876666667777899999999987 46688999999999754
Q ss_pred cc
Q 003365 668 SG 669 (826)
Q Consensus 668 s~ 669 (826)
+.
T Consensus 492 ~d 493 (678)
T KOG1293|consen 492 CD 493 (678)
T ss_pred ch
Confidence 43
No 88
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=29.24 E-value=4.6e+02 Score=34.51 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHc--cCCCChHHHHHHHHHHHhccCCccccccccchhhHH
Q 003365 517 TVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILL--HGEKHPLLQKLGIDILTSLALEEDATERIGGTGGML 594 (826)
Q Consensus 517 iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~--~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI 594 (826)
-|...|..|++|.+.--+-. .-.++...++.|..-+.- .+..++++|++|.+++..+--+.+--+.|.+.. +.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdla----svfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~-vL 1815 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLA----SVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCN-VL 1815 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchh----hhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhh-HH
Confidence 46677877777765532211 111111122333222211 233568899999999988866666556666555 55
Q ss_pred HHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc---chhHHHHHHHHHHHhhh--cc
Q 003365 595 KELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV---PLVRVNAARILRNLCAS--SG 669 (826)
Q Consensus 595 ~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d---~~~r~~AA~IL~nLC~~--s~ 669 (826)
..|+. .+++- + +.|..+-+.|-.|++.. .-...-++...+..+.+|+.. +..|.-||++|..|-+. .+
T Consensus 1816 ~~LL~-lLHS~-P----S~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~G 1888 (2235)
T KOG1789|consen 1816 TTLLT-LLHSQ-P----SMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTG 1888 (2235)
T ss_pred HHHHH-HHhcC-h----HHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccC
Confidence 77777 44432 1 35666777888886432 112222222445666667654 67899999999999762 33
Q ss_pred cchhhhhhhHHhHHHHHHHHHh
Q 003365 670 ADCFNQLRGVTAAAPTILKAIT 691 (826)
Q Consensus 670 ~e~~~~Lk~l~~alp~VL~~I~ 691 (826)
+...-- +-.-+|.++-.+|
T Consensus 1889 PrV~IT---L~kFLP~~f~d~~ 1907 (2235)
T KOG1789|consen 1889 PRVTIT---LIKFLPEIFADSL 1907 (2235)
T ss_pred Cceeee---hHHhchHHHHHHH
Confidence 432111 4455666665554
No 89
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=28.98 E-value=1e+02 Score=22.47 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=23.2
Q ss_pred hhhhhHHHHHccCCCChHHHHHHHHHHHhcc
Q 003365 548 FTISNIRDILLHGEKHPLLQKLGIDILTSLA 578 (826)
Q Consensus 548 f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA 578 (826)
..+..|...|++ .++++++.|.+.|+||+
T Consensus 12 g~i~~L~~ll~~--~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKS--EDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcC--CCHHHHHHHHHHHHHHc
Confidence 466777777773 45899999999999986
No 90
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=28.82 E-value=5.9e+02 Score=31.57 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=51.5
Q ss_pred hHHHHHHhhc---cchhHHHHHHHHHHHhh-hcccchhhhhh-hHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCc
Q 003365 640 VVDKLVETLA---VPLVRVNAARILRNLCA-SSGADCFNQLR-GVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTR 714 (826)
Q Consensus 640 vi~~Lv~mL~---d~~~r~~AA~IL~nLC~-~s~~e~~~~Lk-~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~ 714 (826)
.+.+|-.+|- +..|-.+-.+||.-+|. |+--.+ ..+. -++..+|...-...+++.|..+--|-|.-.||..- |
T Consensus 643 ~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~-~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~-p 720 (975)
T COG5181 643 ELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRF-RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNS-P 720 (975)
T ss_pred HHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcc-cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcC-c
Confidence 3444444442 36788899999999997 554332 2222 27778888777777888999998888888999863 4
Q ss_pred h
Q 003365 715 E 715 (826)
Q Consensus 715 e 715 (826)
|
T Consensus 721 e 721 (975)
T COG5181 721 E 721 (975)
T ss_pred c
Confidence 4
No 91
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=28.66 E-value=4.8e+02 Score=30.01 Aligned_cols=103 Identities=16% Similarity=0.219 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhcc-CCccccccccchhhH
Q 003365 515 ILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLA-LEEDATERIGGTGGM 593 (826)
Q Consensus 515 ~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA-~D~~~re~Ig~~~~i 593 (826)
+.+...+++++|-+.+..-..-..+..+ -+-|.+.+|. .+.+++.-+++|....+.+. ++++ .++| ..++
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~--id~~ii~SL~----~~~~~~~ER~QALkliR~~l~~~~~-~~~~--~~~v 109 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLH--IDIFIIRSLD----RDNKNDVEREQALKLIRAFLEIKKG-PKEI--PRGV 109 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcC--CchhhHhhhc----ccCCChHHHHHHHHHHHHHHHhcCC-cccC--CHHH
Confidence 6677889999999987754332222222 2456776665 33345777888999888773 3333 2333 4678
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcch
Q 003365 594 LKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSN 631 (826)
Q Consensus 594 I~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~N 631 (826)
++.++.+--+ .+|.+|..|=|.|+-|+..++.-
T Consensus 110 vralvaiae~-----~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 110 VRALVAIAEH-----EDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred HHHHHHHHhC-----CchHHHHHHHHHHHHHHhhCHHH
Confidence 8988886544 34568989999999998887664
No 92
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=27.92 E-value=1e+02 Score=28.19 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHhhhcccchhhhhhh-HHhHHHHHHHHHhchhhhHHHHHHHhHH
Q 003365 652 LVRVNAARILRNLCASSGADCFNQLRG-VTAAAPTILKAITSEDYKLQEVMIGLAA 706 (826)
Q Consensus 652 ~~r~~AA~IL~nLC~~s~~e~~~~Lk~-l~~alp~VL~~I~~~e~k~LE~ligLa~ 706 (826)
..|..||++|.++|...+..+ +.|+- +...+-+++..-...-+...-|+.||+.
T Consensus 21 ~LRd~AA~lL~~I~~~~~~~~-~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~ 75 (92)
T PF07571_consen 21 ALRDFAASLLAQICRKFSSSY-PTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSA 75 (92)
T ss_pred HHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 468899999999997433322 22333 5555544432222223455556777664
No 93
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=27.70 E-value=1.4e+03 Score=29.28 Aligned_cols=177 Identities=18% Similarity=0.185 Sum_probs=103.5
Q ss_pred HHHHHHHHHhCCCCc--ccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhcccc
Q 003365 379 SVIERFVEMLNWKDP--QEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHA 456 (826)
Q Consensus 379 ~~i~rLi~ML~wts~--~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~ 456 (826)
+..|-.|+.|.-++. .|.|..-.-|.|+++ ||+++.+-++|++-.+.
T Consensus 84 eAtE~~v~~l~~~~~~~~d~e~~~~~~~v~~~--------------~gGL~~ll~~l~~~~~~----------------- 132 (802)
T PF13764_consen 84 EATEEFVESLEDDSEEEEDPEQEFKIASVLAE--------------CGGLEVLLSRLDSIRDF----------------- 132 (802)
T ss_pred ccchhhHhhccCccccccCHHHHHHHHHHhhc--------------CCCHHHHHHHHHhhccc-----------------
Confidence 445555666654433 355666666666654 78888888888875421
Q ss_pred ccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchh
Q 003365 457 NYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITG 536 (826)
Q Consensus 457 ~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G 536 (826)
...+++....+.+|.--+.=..|-+.+.+ .+.|+.+.+-.. .. +.... +..+..+++.-|.++..|++-.-..
T Consensus 133 -~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~-~~al~~LL~~L~--~~-l~~~~-~~~~~~i~E~LL~IiE~ll~ea~~~- 205 (802)
T PF13764_consen 133 -SRGRELLQVLLKLLRYCCKVKVNRRALLE-LNALNRLLSVLN--RA-LQANQ-NSSQAEIAEQLLEIIESLLSEANSS- 205 (802)
T ss_pred -cCcHHHHHHHHHHHHHHHhhHHHHHHHHH-cCCHHHHHHHHH--HH-HhCcc-ccccchHHHHHHHHHHHHHHHHhhh-
Confidence 11235666778888766655666666655 366666654221 11 11111 2356788899999999887653321
Q ss_pred hHHHHHHhh-cc-----hhhhhHHHHHc---cC--CCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhc
Q 003365 537 EHLRREISE-VV-----FTISNIRDILL---HG--EKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFK 603 (826)
Q Consensus 537 ~~LR~eIS~-~~-----f~lsNL~~IL~---~~--~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~ 603 (826)
.++...+. .. ...+.+.-.|+ +. .+++.+.+..+.||-.|+.+.... ...|++.|-+
T Consensus 206 -~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~---------m~~Lv~~F~p 273 (802)
T PF13764_consen 206 -SSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK---------MDALVEHFKP 273 (802)
T ss_pred -hhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH---------HHHHHHHHHH
Confidence 11111110 01 13344444443 22 356888999999999999876642 3677776654
No 94
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=27.06 E-value=33 Score=42.42 Aligned_cols=39 Identities=28% Similarity=0.450 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHhh-hhHHHHHHhhccc
Q 003365 613 VRIAAGEALAMLALDSKSNCHRILKL-KVVDKLVETLAVP 651 (826)
Q Consensus 613 lr~~AGeALamLa~es~~Nc~~ILke-~vi~~Lv~mL~d~ 651 (826)
.+..+.-|+++.++.+++.|..|+.. ...+-++.++.|.
T Consensus 643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~ 682 (748)
T KOG4151|consen 643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE 682 (748)
T ss_pred HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc
Confidence 44555667888999999999987655 5566666777663
No 95
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.52 E-value=4.9e+02 Score=29.58 Aligned_cols=92 Identities=21% Similarity=0.236 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHH
Q 003365 563 HPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVD 642 (826)
Q Consensus 563 ~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~ 642 (826)
+|.+++.|+++|-+|--. ..+--.-.....++.|++..-+..+ ...|..||++|+ +.+.=...|+. +.++
T Consensus 16 sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-------~~~a~~alVnls-q~~~l~~~ll~-~~~k 85 (353)
T KOG2973|consen 16 SPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-------AEPAATALVNLS-QKEELRKKLLQ-DLLK 85 (353)
T ss_pred ChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-------ccHHHHHHHHHH-hhHHHHHHHHH-HHHH
Confidence 489999999999888533 1111001123445666663322221 236889999997 33333344554 4888
Q ss_pred HHHHhhccchh--HHHHHHHHHHH
Q 003365 643 KLVETLAVPLV--RVNAARILRNL 664 (826)
Q Consensus 643 ~Lv~mL~d~~~--r~~AA~IL~nL 664 (826)
.++.|+.|+.. --..+.+|.||
T Consensus 86 ~l~~~~~~p~~~lad~~cmlL~NL 109 (353)
T KOG2973|consen 86 VLMDMLTDPQSPLADLICMLLSNL 109 (353)
T ss_pred HHHHHhcCcccchHHHHHHHHHHh
Confidence 99999988632 22444555555
No 96
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=26.46 E-value=80 Score=37.06 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhccchhHHHHHHHHHHHhhhccc
Q 003365 591 GGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILRNLCASSGA 670 (826)
Q Consensus 591 ~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d~~~r~~AA~IL~nLC~~s~~ 670 (826)
.-||+.||+.- .++ ....++..|+++||.|- +..+ ++-...+.+|.+|||.+.+.
T Consensus 311 nPiIrpLMdSI-K~E---en~~LQ~rsA~slA~Li----------------~~~~-----~rkp~PndKIvkNLc~flC~ 365 (441)
T PF12054_consen 311 NPIIRPLMDSI-KRE---ENELLQQRSAESLARLI----------------QLCV-----DRKPCPNDKIVKNLCTFLCV 365 (441)
T ss_pred cHHHHHHHHHh-hcc---ccHHHHHHHHHHHHHHH----------------HHHh-----CCCCCCcHHHHHHHhhhhcc
Confidence 36899999943 332 22458888999999883 2222 33345677888899988663
No 97
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=26.18 E-value=87 Score=31.54 Aligned_cols=103 Identities=16% Similarity=0.093 Sum_probs=69.4
Q ss_pred CCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhh
Q 003365 561 EKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKV 640 (826)
Q Consensus 561 ~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~v 640 (826)
..+.|-|+.+..=|+|.|.|...-+..-.. ..++.|+++- ++....+..-+--+|.+|+.+ +.|...|..+..
T Consensus 28 tt~~eakeqv~ANLANFAYDP~Nys~Lrql-----~vLdlFvdsl-~e~ne~LvefgIgglCNlC~d-~~n~~~I~ea~g 100 (173)
T KOG4646|consen 28 TTNIEAKEQVTANLANFAYDPINYSHLRQL-----DVLDLFVDSL-EEQNELLVEFGIGGLCNLCLD-KTNAKFIREALG 100 (173)
T ss_pred hccHHHHHHHHHHHHhhccCcchHHHHHHh-----hHHHHHHHHh-hcccHHHHHHhHHHHHhhccC-hHHHHHHHHhcC
Confidence 356888888888999999998654332211 3457788763 333334555566678888755 688888977755
Q ss_pred HHHHHHhhccchh--HHHHHHHHHHHhhhccc
Q 003365 641 VDKLVETLAVPLV--RVNAARILRNLCASSGA 670 (826)
Q Consensus 641 i~~Lv~mL~d~~~--r~~AA~IL~nLC~~s~~ 670 (826)
+.-.+..|+++.- --.||--|.+||-+-..
T Consensus 101 ~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt 132 (173)
T KOG4646|consen 101 LPLIIFVLSSPPEITVHSAALFLQLLEFGERT 132 (173)
T ss_pred CceEEeecCCChHHHHHHHHHHHHHhcCcccc
Confidence 5555566777432 23688889999987654
No 98
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=24.93 E-value=3.4e+02 Score=27.80 Aligned_cols=119 Identities=11% Similarity=0.144 Sum_probs=72.4
Q ss_pred chhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchh
Q 003365 424 GAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEES 503 (826)
Q Consensus 424 Gaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ 503 (826)
+++..+.++++.+.+.+. .+.+...+.|.-.-.|......+=++-.. ..|.||+.|.+...
T Consensus 11 ~Gl~~L~~~iE~g~~~~~-----------------~~~~~La~~L~af~eLMeHg~vsWd~l~~-~FI~Kia~~Vn~~~- 71 (160)
T PF11841_consen 11 DGLTLLIKMIEEGTEIQP-----------------CKGEILAYALTAFVELMEHGIVSWDTLSD-SFIKKIASYVNSSA- 71 (160)
T ss_pred cCHHHHHHHHHcCCccCc-----------------chHHHHHHHHHHHHHHHhcCcCchhhccH-HHHHHHHHHHcccc-
Confidence 566677777776653110 01133455555555665421112222222 57899998875321
Q ss_pred hhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhc
Q 003365 504 LLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSL 577 (826)
Q Consensus 504 ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~L 577 (826)
.-..++..||-.|..++... ..+.+.|.+. -.+.+|-..|+. .+++.|.-|+-.+--|
T Consensus 72 ---------~d~~i~q~sLaILEs~Vl~S----~~ly~~V~~e-vt~~~Li~hLq~--~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 72 ---------MDASILQRSLAILESIVLNS----PKLYQLVEQE-VTLESLIRHLQV--SNQEIQTNAIALINAL 129 (160)
T ss_pred ---------ccchHHHHHHHHHHHHHhCC----HHHHHHHhcc-CCHHHHHHHHHc--CCHHHHHHHHHHHHHH
Confidence 12356789999999999863 4455666665 567788877777 4588888888877766
No 99
>PTZ00429 beta-adaptin; Provisional
Probab=23.82 E-value=1.6e+03 Score=28.54 Aligned_cols=103 Identities=8% Similarity=0.089 Sum_probs=53.6
Q ss_pred HHHHHHHHhhccCCCchhHHHHHHHHHHHHhhhcCCcccccccchhHHHHHhhcCCCcchhhhhhHHHHHHhhCc--CCc
Q 003365 290 CKLLEEVNKECDLGPSGIISIRRFFYDAYSKCVNGSIFDGLKMDMVIFGMELLDSNSPDEQLIGARILRQFAMSK--RFS 367 (826)
Q Consensus 290 ~rll~~v~~~~~~g~~G~~sv~~Y~~~a~~~C~~g~vf~~~~~~LVtFA~dll~S~S~~~qL~GvriL~~~l~~~--~~~ 367 (826)
++++..+ -.+++||...+-..+.. | .|.=...-.+++..-...|.|.++-=-+..++.+-.+.... ...
T Consensus 222 ~~Ll~~L---~e~~EW~Qi~IL~lL~~-y-----~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~ 292 (746)
T PTZ00429 222 NRLVYHL---PECNEWGQLYILELLAA-Q-----RPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELI 292 (746)
T ss_pred HHHHHHh---hcCChHHHHHHHHHHHh-c-----CCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHH
Confidence 4455444 25679998877766633 1 11111222456666667777776666677777666555321 111
Q ss_pred hHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 003365 368 DDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAG 411 (826)
Q Consensus 368 ~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~ 411 (826)
.+...|+. ..|+. |.- .+.|+|-.|=+-+..++.
T Consensus 293 ~~~~~rl~------~pLv~-L~s---s~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 293 ERCTVRVN------TALLT-LSR---RDAETQYIVCKNIHALLV 326 (746)
T ss_pred HHHHHHHH------HHHHH-hhC---CCccHHHHHHHHHHHHHH
Confidence 11221211 22232 321 245788888777777664
No 100
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=22.21 E-value=1.6e+02 Score=31.67 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=33.5
Q ss_pred hhhHHHHHHhhCcCC--chHHHHHhccCHHHHHHHHHHh---CCCCc
Q 003365 352 IGARILRQFAMSKRF--SDDTLQKIGINLSVIERFVEML---NWKDP 393 (826)
Q Consensus 352 ~GvriL~~~l~~~~~--~~~~L~kl~tS~~~i~rLi~ML---~wts~ 393 (826)
-|++||+.|...+.. -.++-++++-++.|+.|++.+| ||-..
T Consensus 5 ral~iL~~l~~~~~~l~l~ela~~~glpksT~~RlL~tL~~~G~v~~ 51 (246)
T COG1414 5 RALAILDLLAEGPGGLSLAELAERLGLPKSTVHRLLQTLVELGYVEQ 51 (246)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEE
Confidence 488999999986654 4566678899999999999998 66443
No 101
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=21.72 E-value=3.2e+02 Score=26.44 Aligned_cols=67 Identities=12% Similarity=0.176 Sum_probs=46.9
Q ss_pred hcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 003365 342 LDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAG 411 (826)
Q Consensus 342 l~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~ 411 (826)
|++.+|..|+..+.+|+.++++-.. .....-.+.+-+..|+.++.-+...+.++|.-+..++...+.
T Consensus 46 l~~~n~~vql~AL~lLd~~vkNcg~---~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 46 IKYGNPHVQLLALTLLELLVKNCGK---PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhCCh---HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677889999999999999998542 122222334545557777764324567899999999988885
No 102
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=21.61 E-value=1.5e+03 Score=27.64 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=47.5
Q ss_pred hHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcch
Q 003365 552 NIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSN 631 (826)
Q Consensus 552 NL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~N 631 (826)
--..||.-.+.+.+.++||++.+....=+=..-+ +.-|..+++.. . +++..+|+.|-.+|-.++.+++.+
T Consensus 24 ~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLc-E----Ded~~iR~~aik~lp~~ck~~~~~ 93 (556)
T PF05918_consen 24 DYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLC-E----DEDVQIRKQAIKGLPQLCKDNPEH 93 (556)
T ss_dssp HHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHH-T-----SSHHHHHHHHHHGGGG--T--T-
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHH-h----cccHHHHHHHHHhHHHHHHhHHHH
Confidence 3456777666678899999998887743322211 23456666633 1 123458888888888888777777
Q ss_pred HHHHHhhhhHHHHHHhhc
Q 003365 632 CHRILKLKVVDKLVETLA 649 (826)
Q Consensus 632 c~~ILke~vi~~Lv~mL~ 649 (826)
+..| .+-|+-+|.
T Consensus 94 v~kv-----aDvL~QlL~ 106 (556)
T PF05918_consen 94 VSKV-----ADVLVQLLQ 106 (556)
T ss_dssp HHHH-----HHHHHHHTT
T ss_pred HhHH-----HHHHHHHHh
Confidence 7665 444444453
No 103
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=20.84 E-value=1.5e+03 Score=27.94 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=62.7
Q ss_pred HHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccC-----C--CChHHHHHHHHHHHhccCCccccccccchhhHHHH
Q 003365 524 LVKMLASTTGITGEHLRREISEVVFTISNIRDILLHG-----E--KHPLLQKLGIDILTSLALEEDATERIGGTGGMLKE 596 (826)
Q Consensus 524 vL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~-----~--~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~ 596 (826)
++.|++++.-|||..=|+. -.++.=|.++|+|+ + .++-.-|.|.+|+..+=+.-+-.+-|.. -|-.
T Consensus 61 cVtRit~aIRET~siE~Ya----AaLVDlLd~cL~hnl~p~g~kded~PHaKIAsDi~SSiFLny~K~~~m~~---a~p~ 133 (851)
T KOG3723|consen 61 CVTRITTAIRETESIEKYA----AALVDLLDSCLEHNLRPFGKKDEDTPHAKIASDIMSSIFLNYNKPPVMAL---AIPI 133 (851)
T ss_pred HHHHHHHHHHhcchHHHHH----HHHHHHHHHHHhccCccCCCCCCCCchhhHHHHHHHHHHHhcCCCCceee---ehhh
Confidence 5678888888888665554 35666777888764 1 2455778899999987554443322211 1111
Q ss_pred HHHHHhcCC---CCC-chhhHHHHHHHHHHHHhccCcchHHHHHhh
Q 003365 597 LFNILFKEG---MPE-NQNCVRIAAGEALAMLALDSKSNCHRILKL 638 (826)
Q Consensus 597 L~~iFl~~~---~~~-~~~~lr~~AGeALamLa~es~~Nc~~ILke 638 (826)
-.. ||.++ ... ...-+-..|-+-.-.|+-+.+..|..||..
T Consensus 134 av~-fL~rgn~el~rn~~~ylslaai~~adLL~~hTEv~~~siLSg 178 (851)
T KOG3723|consen 134 AVK-FLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILSG 178 (851)
T ss_pred HHH-HHhccChhhcccchhhhhHHHHhhhhhccCchHHHHHHHhcc
Confidence 122 66553 111 233344444444446665678889998875
No 104
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=20.51 E-value=1e+02 Score=31.07 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCccHHHHHhhcHHHHHHHHHHH
Q 003365 754 RYAIELAIWMMRDKATNVHIFKNLGLEMVLESVIET 789 (826)
Q Consensus 754 R~~vE~~I~mm~~~~~y~~~f~e~~m~eaL~~v~~T 789 (826)
|-+.|++||-=++++.+-+.|-|..|+..+.++.+.
T Consensus 2 r~iaE~~iwGDq~~~~~Fd~F~E~nil~~f~~il~~ 37 (149)
T PF09758_consen 2 RSIAEILIWGDQNDPSFFDFFMEKNILSTFVRILKQ 37 (149)
T ss_pred hhhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999888776654
No 105
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=20.18 E-value=1.3e+03 Score=26.42 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=75.7
Q ss_pred hhHHHHHHhhccchhHHHHHHHHHHHhhhccc----c-h-----hhhhhhHHhHHHHHHHHHhchhhhHHH-HHHHhHHH
Q 003365 639 KVVDKLVETLAVPLVRVNAARILRNLCASSGA----D-C-----FNQLRGVTAAAPTILKAITSEDYKLQE-VMIGLAAQ 707 (826)
Q Consensus 639 ~vi~~Lv~mL~d~~~r~~AA~IL~nLC~~s~~----e-~-----~~~Lk~l~~alp~VL~~I~~~e~k~LE-~ligLa~q 707 (826)
..+++|+++|.|++.+..||+-++-|.....+ + | .-+-|.-...+|+.++...+..+..-+ -+++|+ .
T Consensus 271 ~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs-~ 349 (415)
T PF12460_consen 271 ELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS-H 349 (415)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH-H
Confidence 56889999999999999999999999875321 1 1 111244688899999888876654333 234444 3
Q ss_pred HhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCccH
Q 003365 708 VFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKATNV 771 (826)
Q Consensus 708 Ic~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~~y~ 771 (826)
|.+.++.+=.-.++. ++.-=|.+.|. .|++ .++..+++....+++.++..+
T Consensus 350 ll~~vP~~vl~~~l~-------~LlPLLlqsL~---~~~~---~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 350 LLKNVPKSVLLPELP-------TLLPLLLQSLS---LPDA---DVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHhhCCHHHHHHHHH-------HHHHHHHHHhC---CCCH---HHHHHHHHHHHHHHHcCHHHH
Confidence 444443322222222 35555666663 3333 489999998888888875433
Done!