Query 003365
Match_columns 826
No_of_seqs 185 out of 216
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 22:48:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 99.5 2.8E-12 9.5E-17 146.3 22.9 385 338-786 62-457 (510)
2 2jdq_A Importin alpha-1 subuni 99.4 1.2E-11 4.1E-16 135.4 25.5 390 335-790 22-426 (450)
3 3tpo_A Importin subunit alpha- 99.4 1.5E-11 5.2E-16 140.5 23.1 387 338-785 81-475 (529)
4 4b8j_A Importin subunit alpha- 99.4 5.2E-11 1.8E-15 134.8 27.1 385 335-787 76-476 (528)
5 1jdh_A Beta-catenin; beta-cate 99.4 3.2E-11 1.1E-15 135.0 23.1 320 378-764 16-338 (529)
6 2z6h_A Catenin beta-1, beta-ca 99.3 1.9E-10 6.6E-15 134.3 25.5 303 377-742 12-317 (644)
7 1wa5_B Importin alpha subunit; 99.3 1.1E-10 3.7E-15 132.6 22.7 384 334-786 88-489 (530)
8 3l6x_A Catenin delta-1; cateni 99.3 3.9E-10 1.3E-14 131.6 26.7 393 335-781 50-491 (584)
9 3now_A UNC-45 protein, SD10334 99.3 3.8E-10 1.3E-14 135.9 24.8 346 379-787 377-759 (810)
10 3nmz_A APC variant protein; pr 99.3 7E-10 2.4E-14 126.0 25.5 394 332-769 31-454 (458)
11 1jdh_A Beta-catenin; beta-cate 99.2 7.4E-10 2.5E-14 123.9 23.9 327 333-709 17-384 (529)
12 2z6h_A Catenin beta-1, beta-ca 99.2 1.9E-09 6.5E-14 125.8 27.9 342 333-741 56-405 (644)
13 2z6g_A B-catenin; FULL-length, 99.2 1.3E-09 4.6E-14 130.8 25.4 329 339-741 121-452 (780)
14 4hxt_A De novo protein OR329; 99.2 3.7E-10 1.3E-14 113.5 16.8 241 379-671 2-246 (252)
15 1xm9_A Plakophilin 1; armadill 99.2 3.5E-09 1.2E-13 119.3 26.4 368 337-764 6-448 (457)
16 1wa5_B Importin alpha subunit; 99.2 1.7E-09 5.8E-14 122.8 23.5 322 333-711 130-458 (530)
17 3nmw_A APC variant protein; AR 99.2 2.6E-10 8.9E-15 125.3 15.5 273 351-673 50-341 (354)
18 2z6g_A B-catenin; FULL-length, 99.1 4.8E-09 1.7E-13 126.0 26.4 345 334-740 151-540 (780)
19 3nmz_A APC variant protein; pr 99.1 4.1E-10 1.4E-14 127.9 15.0 271 352-672 167-456 (458)
20 3ul1_B Importin subunit alpha- 99.1 2.6E-09 8.9E-14 121.7 21.3 349 334-738 101-457 (510)
21 3now_A UNC-45 protein, SD10334 99.1 2.2E-09 7.4E-14 129.4 21.4 279 339-668 427-739 (810)
22 1xm9_A Plakophilin 1; armadill 99.1 4.1E-09 1.4E-13 118.7 21.4 354 380-790 3-431 (457)
23 3opb_A SWI5-dependent HO expre 99.1 5.3E-09 1.8E-13 124.6 22.5 266 373-672 451-734 (778)
24 2jdq_A Importin alpha-1 subuni 99.1 1.7E-08 5.7E-13 110.4 24.6 320 333-710 64-390 (450)
25 3tpo_A Importin subunit alpha- 99.1 1.5E-08 5.2E-13 115.7 25.1 340 334-725 120-468 (529)
26 4b8j_A Importin subunit alpha- 99.0 1.9E-08 6.5E-13 113.7 24.3 361 333-761 117-492 (528)
27 4db8_A Armadillo-repeat protei 99.0 6.2E-09 2.1E-13 105.6 17.6 235 335-667 14-252 (252)
28 3nmw_A APC variant protein; AR 99.0 2.9E-08 1E-12 109.1 21.2 280 463-769 48-338 (354)
29 3l6x_A Catenin delta-1; cateni 99.0 8.5E-09 2.9E-13 120.3 17.4 316 335-669 92-479 (584)
30 4hxt_A De novo protein OR329; 98.8 2.3E-07 8E-12 93.0 18.3 222 462-711 17-242 (252)
31 4db6_A Armadillo repeat protei 98.7 1.5E-07 5E-12 92.9 14.1 180 462-667 27-210 (210)
32 4db8_A Armadillo-repeat protei 98.6 5.8E-07 2E-11 91.0 15.5 182 461-668 26-211 (252)
33 3opb_A SWI5-dependent HO expre 98.5 3.1E-05 1.1E-09 92.6 27.2 371 379-796 334-765 (778)
34 4db6_A Armadillo repeat protei 98.2 4.8E-05 1.6E-09 74.8 17.1 191 548-761 12-205 (210)
35 3tt9_A Plakophilin-2; cell adh 98.1 1.2E-05 4E-10 83.7 11.0 208 336-579 11-229 (233)
36 3tt9_A Plakophilin-2; cell adh 98.1 2E-05 6.9E-10 81.9 12.6 184 463-667 26-230 (233)
37 1xqr_A HSPBP1 protein; armadil 98.1 0.00011 3.9E-09 78.6 18.3 179 464-667 57-239 (296)
38 1xqr_A HSPBP1 protein; armadil 97.7 0.0012 4.2E-08 70.6 19.0 186 563-768 53-241 (296)
39 2bpt_A Importin beta-1 subunit 97.2 0.11 3.7E-06 61.3 28.7 362 333-768 266-671 (861)
40 4fdd_A Transportin-1; heat rep 97.0 0.2 6.8E-06 59.9 28.1 302 336-711 48-389 (852)
41 3grl_A General vesicular trans 96.9 0.028 9.7E-07 66.0 19.5 301 333-666 122-449 (651)
42 4fdd_A Transportin-1; heat rep 96.8 0.13 4.5E-06 61.5 24.2 316 341-711 182-513 (852)
43 1qgr_A Protein (importin beta 96.6 0.32 1.1E-05 57.4 25.2 368 333-767 259-681 (876)
44 2bpt_A Importin beta-1 subunit 96.3 1.1 3.8E-05 52.7 27.6 371 333-769 134-533 (861)
45 3ltm_A Alpha-REP4; protein eng 96.1 0.26 8.9E-06 48.1 17.6 191 374-669 14-206 (211)
46 1qgr_A Protein (importin beta 95.6 4.7 0.00016 47.4 28.8 370 333-768 128-540 (876)
47 3ltj_A Alpharep-4; protein eng 95.6 0.77 2.6E-05 44.4 18.4 186 331-625 12-197 (201)
48 1ibr_B P95, importin beta-1 su 95.5 0.66 2.3E-05 50.0 19.6 350 347-766 51-438 (462)
49 1b3u_A Protein (protein phosph 95.4 0.57 1.9E-05 52.3 19.0 263 335-671 12-276 (588)
50 1oyz_A Hypothetical protein YI 95.2 0.73 2.5E-05 47.0 17.6 197 377-665 52-249 (280)
51 3grl_A General vesicular trans 95.1 0.072 2.5E-06 62.7 10.6 252 376-666 18-292 (651)
52 3ltj_A Alpharep-4; protein eng 94.9 2.1 7E-05 41.3 19.1 184 377-665 12-197 (201)
53 2qk2_A LP04448P; mini spindles 94.1 2.5 8.4E-05 42.4 18.1 194 519-740 33-232 (242)
54 1b3u_A Protein (protein phosph 94.0 2.8 9.4E-05 46.7 20.0 268 334-671 165-436 (588)
55 1u6g_C TIP120 protein, CAND1; 93.9 5.7 0.0002 49.4 24.6 230 333-630 48-288 (1230)
56 3ltm_A Alpha-REP4; protein eng 93.7 2.9 9.8E-05 40.6 17.4 156 378-627 49-204 (211)
57 1ibr_B P95, importin beta-1 su 93.3 1.5 5.2E-05 47.1 16.0 288 377-712 126-439 (462)
58 1oyz_A Hypothetical protein YI 93.1 1.4 4.9E-05 44.8 14.7 196 379-665 23-220 (280)
59 2vgl_B AP-2 complex subunit be 93.0 6 0.00021 45.5 21.2 88 562-667 294-383 (591)
60 1w63_A Adapter-related protein 91.9 22 0.00076 41.1 24.9 50 610-666 363-414 (618)
61 1w63_A Adapter-related protein 91.3 25 0.00087 40.6 31.2 45 381-435 109-153 (618)
62 2qk1_A Protein STU2; STU2P, XM 91.2 4.5 0.00015 41.5 15.7 165 547-723 59-233 (249)
63 2vgl_B AP-2 complex subunit be 90.5 28 0.00097 39.8 25.8 87 563-666 331-419 (591)
64 4gmo_A Putative uncharacterize 89.8 1.7 5.8E-05 51.3 12.3 156 612-778 49-227 (684)
65 4gmo_A Putative uncharacterize 89.8 2.3 7.9E-05 50.1 13.5 124 562-694 46-195 (684)
66 1u6g_C TIP120 protein, CAND1; 89.4 6 0.0002 49.2 17.5 150 548-712 48-206 (1230)
67 2qk2_A LP04448P; mini spindles 89.3 19 0.00064 35.8 19.4 177 563-768 28-208 (242)
68 2qk1_A Protein STU2; STU2P, XM 83.6 9.2 0.00032 39.2 12.3 138 612-768 31-178 (249)
69 3b2a_A TON_1937, putative unch 83.5 9.4 0.00032 39.9 12.0 134 340-531 82-219 (265)
70 2vgl_A Adaptor protein complex 81.4 86 0.0029 36.3 20.9 241 379-666 187-433 (621)
71 1wa5_C Importin alpha RE-expor 79.9 35 0.0012 41.3 17.6 136 542-688 29-180 (960)
72 3ebb_A Phospholipase A2-activa 64.2 37 0.0013 36.2 11.0 150 551-712 106-262 (304)
73 1te4_A Conserved protein MTH18 58.5 43 0.0015 29.9 9.1 84 550-662 44-129 (131)
74 3dad_A FH1/FH2 domain-containi 58.4 2.1E+02 0.0071 31.1 16.8 115 549-670 161-290 (339)
75 4ffb_C Protein STU2; tubulin f 52.0 1.7E+02 0.0057 29.7 13.3 185 457-671 19-217 (278)
76 1ho8_A Vacuolar ATP synthase s 50.9 1.5E+02 0.0053 33.6 13.6 119 658-790 321-475 (480)
77 3b2a_A TON_1937, putative unch 47.6 1.7E+02 0.0059 30.6 12.1 178 339-578 39-217 (265)
78 1lsh_A Lipovitellin (LV-1N, LV 46.5 3E+02 0.01 34.0 16.6 65 546-621 469-538 (1056)
79 1y8m_A FIS1; mitochondria, unk 46.2 42 0.0015 32.2 7.0 76 333-412 41-127 (144)
80 3gjx_A Exportin-1; transport, 45.2 5.4E+02 0.019 32.0 23.3 64 378-476 27-90 (1073)
81 3o48_A Mitochondria fission 1 44.8 39 0.0013 32.1 6.4 76 333-412 42-128 (134)
82 2x1g_F Cadmus; transport prote 41.6 3.7E+02 0.013 32.1 16.1 164 540-713 575-763 (971)
83 3b4s_A Protein LUXT; APC91483. 36.2 91 0.0031 27.9 7.0 66 640-707 24-90 (94)
84 2db0_A 253AA long hypothetical 34.8 3.8E+02 0.013 27.3 14.6 56 611-666 140-210 (253)
85 2of3_A ZYG-9; multifunctional 34.3 97 0.0033 32.4 8.1 137 516-676 102-246 (266)
86 1nzn_A CGI-135 protein, fissio 28.5 83 0.0028 29.4 5.7 76 333-412 37-124 (126)
87 1te4_A Conserved protein MTH18 23.2 89 0.003 27.8 4.9 44 377-434 71-114 (131)
88 3c2g_A SYS-1 protein; beta-cat 22.6 4.2E+02 0.014 29.4 10.5 74 616-691 302-377 (619)
89 4atg_A TAF6; transcription, TF 21.4 3.6E+02 0.012 27.0 9.2 87 308-410 7-118 (196)
90 3l9t_A Putative uncharacterize 21.0 7E+02 0.024 25.7 13.0 96 550-671 39-138 (240)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.46 E-value=2.8e-12 Score=146.27 Aligned_cols=385 Identities=14% Similarity=0.163 Sum_probs=256.7
Q ss_pred HHHhhcCCCcchhhhhhHHHHHHhhCcCC--chHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCC
Q 003365 338 GMELLDSNSPDEQLIGARILRQFAMSKRF--SDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQN 415 (826)
Q Consensus 338 A~dll~S~S~~~qL~GvriL~~~l~~~~~--~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~n 415 (826)
-|.-++|+.++.|+.+++-+..+|.+++. .++.+ ..+.|.+||+.|... .+.+++..||+++.++|.+...
T Consensus 62 ~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii-----~~G~ip~LV~lL~~~--~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNII-----RAGLIPKFVSFLGKT--DCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHH-----HTTHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHH-----HCCCHHHHHHHHCCC--CCHHHHHHHHHHHHHHhcCCHH
Confidence 35678999999999999999999976542 22222 237899999999754 3478999999999999864211
Q ss_pred c-eEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhh
Q 003365 416 S-LRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKI 494 (826)
Q Consensus 416 s-Lrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKI 494 (826)
. -.|+. -|++..+..||..++. ++..+....|.+||.|..+|+.+.-..|.++.+
T Consensus 135 ~~~~vv~-~GaIp~Lv~lL~s~~~-----------------------~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~L 190 (510)
T 3ul1_B 135 QTKAVVD-GGAIPAFISLLASPHA-----------------------HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPL 190 (510)
T ss_dssp HHHHHHH-TTHHHHHHHHTTCSCH-----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHH-CCCHHHHHHHHcCCCH-----------------------HHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHH
Confidence 1 12222 5899999999875421 456778899999999988888877777999999
Q ss_pred hcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHH
Q 003365 495 IDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDIL 574 (826)
Q Consensus 495 I~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~IL 574 (826)
+.+..... .......+++.+...+..+........ ++.....++..|...|.+. +++.+..|...|
T Consensus 191 l~lL~~~~-------~~~~~~~~~~~a~~~L~nl~~~~~~~~-----~~~~~~~~lp~L~~LL~~~--~~~v~~~A~~aL 256 (510)
T 3ul1_B 191 LALLAVPD-------LSTLACGYLRNLTWTLSNLCRNKNPAP-----PLDAVEQILPTLVRLLHHN--DPEVLADSCWAI 256 (510)
T ss_dssp HHHTCSSC-------GGGSCHHHHHHHHHHHHHHHCCCSSCC-----CHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHH
T ss_pred HHHHHhcc-------chhhhHHHHHHHHHHHHHHhhcccchh-----HHHHHHhHHHHHHHHHhcC--CHHHHHHHHHHH
Confidence 98764321 111223445666777777775432221 1112224566777777654 488999999999
Q ss_pred HhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--ch
Q 003365 575 TSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PL 652 (826)
Q Consensus 575 t~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~ 652 (826)
.+|+-+.+.+..+-...+++..|+..+ .. .+..++..|..+|..|+..+..++..++..+.+..|+.+|.+ +.
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~----~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~ 331 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLL-GA----TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN 331 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHH-TC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhh-cC----CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHH
Confidence 999976654433222345668888844 43 223577889999999999999999999888888888888876 57
Q ss_pred hHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHH
Q 003365 653 VRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLA 732 (826)
Q Consensus 653 ~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv 732 (826)
.+..||..|.|||.+..+. ...+. =...+|.+++...+.+-+..+....--..++.--+++......+ .| .+
T Consensus 332 v~~~A~~aL~nl~a~~~~~-~~~v~-~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~-~g-----~i 403 (510)
T 3ul1_B 332 IQKEATWTMSNITAGRQDQ-IQQVV-NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH-CG-----II 403 (510)
T ss_dssp HHHHHHHHHHHHTTSCHHH-HHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-TT-----CH
T ss_pred HHHHHHHHHHHHHcCcHHH-HHHHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH-CC-----CH
Confidence 7889999999999854431 11111 13456666665555554443333333333333223433333333 33 34
Q ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcC------CccHHHHHhhcHHHHHHHH
Q 003365 733 NTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDK------ATNVHIFKNLGLEMVLESV 786 (826)
Q Consensus 733 ~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~------~~y~~~f~e~~m~eaL~~v 786 (826)
+.|.+.|+.. =|.|++.+++.+..+++.. ..|...|.++|-.+.|+..
T Consensus 404 ~~L~~LL~~~------d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L 457 (510)
T 3ul1_B 404 EPLMNLLSAK------DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL 457 (510)
T ss_dssp HHHHHGGGCS------CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHhcCC------CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH
Confidence 5677777632 2679999999877777532 3477788999877777654
No 2
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.44 E-value=1.2e-11 Score=135.37 Aligned_cols=390 Identities=14% Similarity=0.159 Sum_probs=264.9
Q ss_pred hHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCC
Q 003365 335 VIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQ 414 (826)
Q Consensus 335 VtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~ 414 (826)
+..-++.++|++++.+..++..|..++....... ++.+..+.+.+..|+++|... .+.++|..|++++.+++.+..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~--~~~~~~~~~~i~~L~~~L~~~--~~~~v~~~a~~~L~~l~~~~~ 97 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPP--IDEVISTPGVVARFVEFLKRK--ENCTLQFESAWVLTNIASGNS 97 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCC--HHHHHTSTTHHHHHHHHHTCT--TCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc--HHHHHHcCCcHHHHHHHHCCC--CCHHHHHHHHHHHHHHhcCCH
Confidence 5566788889999999999999999886332111 223344458899999999754 357899999999999997321
Q ss_pred CceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhh
Q 003365 415 NSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKI 494 (826)
Q Consensus 415 nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKI 494 (826)
...+..--+|+++.+..+|..++ .++...++..|.+|+.+...++...-..|.++.+
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~~~~-----------------------~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 154 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLSSEF-----------------------EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPL 154 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSC-----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC-----------------------HHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHH
Confidence 11111112688888888887531 1456778999999998665555443345899999
Q ss_pred hcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHH
Q 003365 495 IDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDIL 574 (826)
Q Consensus 495 I~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~IL 574 (826)
+.+...+ ....+...++..|..|+...+... +..+. ..++..|..+|.++ +++.+..|.+.|
T Consensus 155 ~~~l~~~-----------~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~--~~~l~~L~~~l~~~--~~~v~~~a~~~L 216 (450)
T 2jdq_A 155 LQLFSKQ-----------NRLTMTRNAVWALSNLCRGKSPPP---EFAKV--SPCLNVLSWLLFVS--DTDVLADACWAL 216 (450)
T ss_dssp HHHTTSC-----------CCHHHHHHHHHHHHHHHCCSSSCC---CGGGT--GGGHHHHHHHTTCC--CHHHHHHHHHHH
T ss_pred HHHhcCC-----------CCHHHHHHHHHHHHHHhCCCCCCC---CHHHH--HHHHHHHHHHHccC--CHHHHHHHHHHH
Confidence 9766321 123455778889999986532111 11221 46778888888754 488999999999
Q ss_pred HhccCCcc-ccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--c
Q 003365 575 TSLALEED-ATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--P 651 (826)
Q Consensus 575 t~LA~D~~-~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~ 651 (826)
.+|+-+.+ ..+.+.. .+++..|+..+ .. .+..++..|..+|..|+..+...+..++..+.++.|+.+|.+ +
T Consensus 217 ~~l~~~~~~~~~~~~~-~~~i~~L~~ll-~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 290 (450)
T 2jdq_A 217 SYLSDGPNDKIQAVID-AGVCRRLVELL-MH----NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKE 290 (450)
T ss_dssp HHHTSSSHHHHHHHHH-TTTHHHHHHHT-TC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSH
T ss_pred HHHHCCCcHHHHHHHH-cCcHHHHHHHH-CC----CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCH
Confidence 99987543 2222222 34667888754 32 234588899999999998888778878777899999999986 4
Q ss_pred hhHHHHHHHHHHHhhhcccchhhhhhhH-HhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHH
Q 003365 652 LVRVNAARILRNLCASSGADCFNQLRGV-TAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEID 730 (826)
Q Consensus 652 ~~r~~AA~IL~nLC~~s~~e~~~~Lk~l-~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~ 730 (826)
..|..|+..|.|+|.+..+ ....+ + ...+|.+++.+.+.+.+..+.....-.+++.-.+++.....++ . .
T Consensus 291 ~vr~~a~~~L~~l~~~~~~-~~~~~--~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~-~-----~ 361 (450)
T 2jdq_A 291 SIKKEACWTISNITAGNRA-QIQTV--IDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE-L-----G 361 (450)
T ss_dssp HHHHHHHHHHHHHTTSCHH-HHHHH--HHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-H-----T
T ss_pred HHHHHHHHHHHHHHcCCHH-HHHHH--HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH-C-----C
Confidence 7889999999999974322 11111 2 3567777777766666666666666667765434443333333 2 2
Q ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcC-----------CccHHHHHhhcHHHHHHHHHHHh
Q 003365 731 LANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDK-----------ATNVHIFKNLGLEMVLESVIETT 790 (826)
Q Consensus 731 fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~-----------~~y~~~f~e~~m~eaL~~v~~T~ 790 (826)
.+..|++.|+.. -|++|+.+++.+..+++.. ..|...|.++|..+.|......+
T Consensus 362 ~i~~L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~ 426 (450)
T 2jdq_A 362 CIKPLCDLLTVM------DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE 426 (450)
T ss_dssp CHHHHHHGGGSS------CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHH
T ss_pred CHHHHHHHhcCC------CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCC
Confidence 566777877632 4689999999887777654 24778888888777777665443
No 3
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.40 E-value=1.5e-11 Score=140.52 Aligned_cols=387 Identities=13% Similarity=0.149 Sum_probs=253.9
Q ss_pred HHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCce
Q 003365 338 GMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSL 417 (826)
Q Consensus 338 A~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsL 417 (826)
.++.++|+.++.|+.+++-+..++.+++... +..+. ..+.|.+||+.|... .+.+++..||+++.++|.+....-
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~--i~~ii-~~G~ip~Lv~lL~~~--~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPP--IDNII-RAGLIPKFVSFLGKT--DCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCC--HHHHH-HTTHHHHHHHHHTCT--TCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCch--HHHHH-HCCCHHHHHHHHcCC--CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4667889999999999999999997654321 11222 237899999999744 357899999999999997522111
Q ss_pred EEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcc
Q 003365 418 RVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDF 497 (826)
Q Consensus 418 rv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~f 497 (826)
+.+-=.|++..+..||..++. ++..+....|.+||.|...|+...-..|.++.++.+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~-----------------------~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~l 212 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHA-----------------------HISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLAL 212 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCH-----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHcCCCH-----------------------HHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHH
Confidence 222226899999999886532 346678889999999877777665566999999987
Q ss_pred cccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhc
Q 003365 498 THAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSL 577 (826)
Q Consensus 498 t~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~L 577 (826)
...... ......+++.+...+..|........ ++.....++..|...|.++ +++.+.-|...|.+|
T Consensus 213 L~~~~~-------~~~~~~~~~~a~~~L~nl~~~~~~~~-----~~~~~~~~lp~L~~LL~~~--~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 213 LAVPDL-------STLACGYLRNLTWTLSNLCRNKNPAP-----PLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYL 278 (529)
T ss_dssp TCSSCG-------GGSCHHHHHHHHHHHHHHHCCCTTCC-----CHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHH
T ss_pred Hhccch-------hHhHHHHHHHHHHHHHHHHhcccchh-----hHHHHhhHHHHHHHHhcCC--cHHHHHHHHHHHHHh
Confidence 643211 11223445566667777765432211 1122234566777777664 488999999999999
Q ss_pred cCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHH
Q 003365 578 ALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRV 655 (826)
Q Consensus 578 A~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~ 655 (826)
+-+.+.+...-...+++..|+.. +.+ .+..++..|..+|..|+..+..++..++..+.+..|+.+|.+ +..+.
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~l-L~~----~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~ 353 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKL-LGA----TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK 353 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHH-HTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHH-hcC----CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHH
Confidence 87655433222224566888874 443 223477789999999999999999999888888999998876 56788
Q ss_pred HHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHH
Q 003365 656 NAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTL 735 (826)
Q Consensus 656 ~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kL 735 (826)
.|+..|.|||.+..+ +...+. =...+|.++....+.+-+..+...+--..++..-+++......+ .| .++.|
T Consensus 354 ~a~~aL~nl~~~~~~-~~~~v~-~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~-~g-----~i~~L 425 (529)
T 3tpo_A 354 EATWTMSNITAGRQD-QIQQVV-NHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVH-CG-----IIEPL 425 (529)
T ss_dssp HHHHHHHHHHTSCHH-HHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-TT-----CHHHH
T ss_pred HHHHHHHHHhcccHH-HHHHHH-hcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH-Cc-----CHHHH
Confidence 999999999985442 111111 13456766666655554444433333333433223433333333 33 35567
Q ss_pred HHHHhhcCCCCCCCChHHHHHHHHHHHHHhc------CCccHHHHHhhcHHHHHHH
Q 003365 736 VQILRKYQHPPIKVPRIRRYAIELAIWMMRD------KATNVHIFKNLGLEMVLES 785 (826)
Q Consensus 736 v~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~------~~~y~~~f~e~~m~eaL~~ 785 (826)
++.|+.. =|.|++.+++-+-.+++. ...|...|.++|-.+.|+.
T Consensus 426 ~~LL~~~------d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~ 475 (529)
T 3tpo_A 426 MNLLSAK------DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA 475 (529)
T ss_dssp HHGGGCS------CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTG
T ss_pred HHHhcCC------CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHH
Confidence 7777632 368999999877777653 1347777888886666643
No 4
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.40 E-value=5.2e-11 Score=134.81 Aligned_cols=385 Identities=12% Similarity=0.119 Sum_probs=262.3
Q ss_pred hHHHHHhhcCCCcchhhhhhHHHHHHhhCcC-CchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccC
Q 003365 335 VIFGMELLDSNSPDEQLIGARILRQFAMSKR-FSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKK 413 (826)
Q Consensus 335 VtFA~dll~S~S~~~qL~GvriL~~~l~~~~-~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~ 413 (826)
+..-++.|.|+.++.|+..++.|..++..++ ...+.+ . ..+.+..|+++|... ++.++|..|++++.+++.+.
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~---~-~~g~v~~Lv~lL~~~--~~~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEV---I-QSGVVPRFVQFLTRE--DFPQLQFEAAWALTNIASGT 149 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHH---H-HTTCHHHHHHHHTCT--TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHH---H-HCCCHHHHHHHhCCC--CCHHHHHHHHHHHHHHhCCC
Confidence 4455677888888999999999999987653 222221 1 236799999999643 34789999999999999742
Q ss_pred CCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhh
Q 003365 414 QNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPK 493 (826)
Q Consensus 414 ~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsK 493 (826)
...-...--.|+++.+..||..++ .++..+.+..|.+|+.|...|+..--..|.++.
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~-----------------------~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~ 206 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSSS-----------------------DDVREQAVWALGNVAGDSPKCRDLVLANGALLP 206 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSC-----------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhcCCC-----------------------HHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHH
Confidence 111111111488888888887532 145677889999999876666554444599999
Q ss_pred hhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHH
Q 003365 494 IIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDI 573 (826)
Q Consensus 494 II~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~I 573 (826)
++.+.... ....+...++..|..|+........ .+ ...++..|...|.+. +++.+..|..+
T Consensus 207 Ll~lL~~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~----~~--~~~~l~~L~~lL~~~--~~~v~~~a~~a 267 (528)
T 4b8j_A 207 LLAQLNEH-----------TKLSMLRNATWTLSNFCRGKPQPSF----EQ--TRPALPALARLIHSN--DEEVLTDACWA 267 (528)
T ss_dssp HHHTCCTT-----------CCHHHHHHHHHHHHHHHCSSSCCCH----HH--HTTHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHhcC-----------CCHHHHHHHHHHHHHHHcCCCCCcH----HH--HHHHHHHHHHHHCCC--CHHHHHHHHHH
Confidence 99766221 1134567788899999876422211 11 246778888888764 48999999999
Q ss_pred HHhccCCcccc-ccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--
Q 003365 574 LTSLALEEDAT-ERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV-- 650 (826)
Q Consensus 574 Lt~LA~D~~~r-e~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d-- 650 (826)
|.+|+-+.+.+ +.+. ..+++..|+..+-+. ...++..|..+|..|+..+..++..++..+++..|+.+|.+
T Consensus 268 L~~l~~~~~~~~~~~~-~~g~v~~Lv~lL~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 341 (528)
T 4b8j_A 268 LSYLSDGTNDKIQAVI-EAGVCPRLVELLLHP-----SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL 341 (528)
T ss_dssp HHHHTSSCHHHHHHHH-HTTCHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC
T ss_pred HHHHHcCCHHHHHHHH-HcCHHHHHHHHHcCC-----ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC
Confidence 99999665443 2222 234567888754332 24588899999999999888888888888899999999875
Q ss_pred -chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChH
Q 003365 651 -PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEI 729 (826)
Q Consensus 651 -~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~ 729 (826)
+..+..|+..|.|||....+ ....+- -...+|.+++...+.+.+..+..++.-..++...++ +....+-+.|
T Consensus 342 ~~~v~~~A~~~L~nl~~~~~~-~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~~~l~~~~---- 414 (528)
T 4b8j_A 342 KKSIKKEACWTISNITAGNKD-QIQAVI-NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH-DQIKYLVSEG---- 414 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHH-HHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH-HHHHHHHHTT----
T ss_pred cHHHHHHHHHHHHHHHCCCHH-HHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH-HHHHHHHHCC----
Confidence 46788999999999974322 111111 124566666666555556666666666666654334 3444444333
Q ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCC-----------ccHHHHHhhcHHHHHHHHH
Q 003365 730 DLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKA-----------TNVHIFKNLGLEMVLESVI 787 (826)
Q Consensus 730 ~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~-----------~y~~~f~e~~m~eaL~~v~ 787 (826)
.+..|++.|+. .-|.++..+++.+-.|++..+ .|...+.++|..+.|....
T Consensus 415 -~i~~L~~lL~~------~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~ 476 (528)
T 4b8j_A 415 -CIKPLCDLLIC------PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ 476 (528)
T ss_dssp -CHHHHHHGGGC------SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG
T ss_pred -CHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH
Confidence 46677888764 236899999998888887543 3889999998777776553
No 5
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.37 E-value=3.2e-11 Score=134.99 Aligned_cols=320 Identities=15% Similarity=0.143 Sum_probs=228.9
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccc
Q 003365 378 LSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHAN 457 (826)
Q Consensus 378 ~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~ 457 (826)
.+.+..|+++|.- .|.++|..|+.++.+|+.+..+.-.+..-||+++.+..+|..+.
T Consensus 16 ~~~i~~Lv~lL~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~-------------------- 72 (529)
T 1jdh_A 16 TRAIPELTKLLND---EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-------------------- 72 (529)
T ss_dssp -CHHHHHHHHHTC---SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC--------------------
T ss_pred HhhHHHHHHHhCC---CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCC--------------------
Confidence 4678899999973 46799999999999999865444445556889998888886532
Q ss_pred cCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhh
Q 003365 458 YGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGE 537 (826)
Q Consensus 458 ~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~ 537 (826)
+++....+...|.+|+.+++|+..|.+. |.|+.++.+.... ...+...++..|..|++...+.
T Consensus 73 --~~~~~~~a~~~L~~ls~~~~~~~~i~~~-g~i~~L~~lL~~~------------~~~v~~~a~~~L~~l~~~~~~~-- 135 (529)
T 1jdh_A 73 --DVETARCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSP------------VDSVLFYAITTLHNLLLHQEGA-- 135 (529)
T ss_dssp --CHHHHHHHHHHHHHHTTSHHHHHHHHHT-THHHHHHHHTTCS------------CHHHHHHHHHHHHHHHHHCTTH--
T ss_pred --CHHHHHHHHHHHHHHHcCchhHHHHHHc-CCHHHHHHHHcCC------------CHHHHHHHHHHHHHHhcCCcch--
Confidence 1245667889999999988899999877 9999999876321 1345678999999999875443
Q ss_pred HHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCC-ccccccccchhhHHHHHHHHHhcCCCCCchhhHHHH
Q 003365 538 HLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALE-EDATERIGGTGGMLKELFNILFKEGMPENQNCVRIA 616 (826)
Q Consensus 538 ~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D-~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~ 616 (826)
|+.+.+. .++..|.+.|+++ +++.+..++++|++|+.+ ++.++.+...+ .+..|++.+-+. +....+..
T Consensus 136 --~~~i~~~-g~i~~L~~ll~~~--~~~~~~~~~~~L~~la~~~~~~~~~i~~~~-~i~~L~~ll~~~----~~~~~~~~ 205 (529)
T 1jdh_A 136 --KMAVRLA-GGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASG-GPQALVNIMRTY----TYEKLLWT 205 (529)
T ss_dssp --HHHHHHH-THHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHHHHHHC----CCHHHHHH
T ss_pred --HHHHHHc-CCHHHHHHHHhcC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCC-CHHHHHHHHHhC----ChHHHHHH
Confidence 3444333 6788899998864 488999999999999985 56666666554 457787754332 22335567
Q ss_pred HHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchh
Q 003365 617 AGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSED 694 (826)
Q Consensus 617 AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e 694 (826)
|..+|..|+. ++.|+..+.+.+.++.|+.++.+ +..+..|+..|.|||.+.... ..+...+|.+++-+.+.+
T Consensus 206 a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~i~~L~~ll~~~~ 279 (529)
T 1jdh_A 206 TSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-----EGMEGLLGTLVQLLGSDD 279 (529)
T ss_dssp HHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-----SCCHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-----HHHHhHHHHHHHHHcCCC
Confidence 8999999985 77899999888999999999976 467889999999999865321 124577888887777777
Q ss_pred hhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHH
Q 003365 695 YKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMM 764 (826)
Q Consensus 695 ~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm 764 (826)
.+..+...+.-..++.- .++..+.+...| .+.+|++.|..... -+.++.-++...-.+.
T Consensus 280 ~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~-----~v~~L~~ll~~~~~----~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 280 INVVTCAAGILSNLTCN--NYKNKMMVCQVG-----GIEALVRTVLRAGD----REDITEPAICALRHLT 338 (529)
T ss_dssp HHHHHHHHHHHHHHTTT--CHHHHHHHHHTT-----HHHHHHHHHHHHTT----CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcC--CHHHHHHHHHcC-----ChHHHHHHHHccCC----HHHHHHHHHHHHHHHH
Confidence 77778777777777753 233444444433 45677777765332 2455655555444443
No 6
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.31 E-value=1.9e-10 Score=134.27 Aligned_cols=303 Identities=15% Similarity=0.160 Sum_probs=221.5
Q ss_pred CHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhcccc
Q 003365 377 NLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHA 456 (826)
Q Consensus 377 S~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~ 456 (826)
..+.+..|+++|.. .|.++|..|++.+.+|+.+..+...+...+|++..+..+|..+.+
T Consensus 12 ~~g~i~~Lv~lL~~---~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~------------------ 70 (644)
T 2z6h_A 12 ATRAIPELTKLLND---EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND------------------ 70 (644)
T ss_dssp CTTTHHHHHHHHTC---SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCC------------------
T ss_pred hhchHHHHHHHHcC---CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCC------------------
Confidence 34678899999973 357999999999999998765554455668899998888875421
Q ss_pred ccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchh
Q 003365 457 NYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITG 536 (826)
Q Consensus 457 ~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G 536 (826)
.+....+...|.+|+.+++|+..|.+. |.|+.++.++... ...+...++..|.+|++...+.
T Consensus 71 ----~~~~~~A~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~------------~~~v~~~A~~aL~nL~~~~~~~- 132 (644)
T 2z6h_A 71 ----VETARCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSP------------VDSVLFYAITTLHNLLLHQEGA- 132 (644)
T ss_dssp ----HHHHHHHHHHHHHHTTSHHHHHHHHTT-THHHHHHHHTTCS------------SHHHHHHHHHHHHHHHHHSTTH-
T ss_pred ----HHHHHHHHHHHHHHhcChhhHHHHHHc-CCHHHHHHHHhCC------------CHHHHHHHHHHHHHHHhCcchh-
Confidence 134567888999999988899999887 9999999876321 1345678999999999875433
Q ss_pred hHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccC-CccccccccchhhHHHHHHHHHhcCCCCCchhhHHH
Q 003365 537 EHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLAL-EEDATERIGGTGGMLKELFNILFKEGMPENQNCVRI 615 (826)
Q Consensus 537 ~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~-D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~ 615 (826)
++.+.+. .++..|.+.|++. +++++..|+++|++|+. +++.++.|...+ .|..|++.+ ... +....+.
T Consensus 133 ---~~~v~~~-g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~~i~~~g-~v~~Lv~lL-~~~---~~~~~~~ 201 (644)
T 2z6h_A 133 ---KMAVRLA-GGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASG-GPQALVNIM-RTY---TYEKLLW 201 (644)
T ss_dssp ---HHHHHHT-THHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHHHH-TTC---CCHHHHH
T ss_pred ---HHHHHHC-CChHHHHHHHCcC--CHHHHHHHHHHHHHHHhcCcHHHHHHHHcC-ChHHHHHHH-HcC---ChHHHHH
Confidence 3344333 6788899999875 47889999999999997 666777776654 468888855 332 2234666
Q ss_pred HHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhch
Q 003365 616 AAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSE 693 (826)
Q Consensus 616 ~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~ 693 (826)
.|..+|..|+ .++.|+..+.+.+.++.|+.++.+ +..+..|+.+|.|||.+.... ..+...+|.+++-+.+.
T Consensus 202 ~a~~~L~nLs-~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-----~~~~~~i~~Lv~lL~~~ 275 (644)
T 2z6h_A 202 TTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-----EGMEGLLGTLVQLLGSD 275 (644)
T ss_dssp HHHHHHHHHT-TCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-----CSCHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHh-cCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-----hhhhhHHHHHHHHHcCC
Confidence 8999999998 478899999888899999999876 578889999999999765331 12456788888777777
Q ss_pred hhhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhhc
Q 003365 694 DYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKY 742 (826)
Q Consensus 694 e~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n 742 (826)
+.+..+...+.-..+|.- +.+..+.+...| .+.+|++.|...
T Consensus 276 d~~v~~~a~~aL~~L~~~--~~~~~~~v~~~g-----~v~~Lv~lL~~~ 317 (644)
T 2z6h_A 276 DINVVTCAAGILSNLTCN--NYKNKMMVCQVG-----GIEALVRTVLRA 317 (644)
T ss_dssp CHHHHHHHHHHHHHHHTT--CHHHHHHHHHTT-----HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC--CHHHHHHHHHcC-----CHHHHHHHHHcc
Confidence 777777777777777753 223344444333 456777777643
No 7
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.31 E-value=1.1e-10 Score=132.61 Aligned_cols=384 Identities=14% Similarity=0.122 Sum_probs=260.5
Q ss_pred hhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCC--chHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 003365 334 MVIFGMELLDSNSPDEQLIGARILRQFAMSKRF--SDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAG 411 (826)
Q Consensus 334 LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~--~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~ 411 (826)
.+.+-++.|.|++++.+..++..|..++..+.. ..... ..+.+..|+++|... .+.++|..|++++.+++.
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~-----~~g~i~~Lv~~L~~~--~~~~v~~~A~~~L~~l~~ 160 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI-----QAGVVPRLVEFMREN--QPEMLQLEAAWALTNIAS 160 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHH-----HTTCHHHHHHTTSTT--SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHH-----HCCCHHHHHHHhCCC--CCHHHHHHHHHHHHHHhC
Confidence 366777889999999999999999999876422 22221 247899999999754 357899999999999997
Q ss_pred cCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCch
Q 003365 412 KKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLL 491 (826)
Q Consensus 412 ~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLI 491 (826)
+....-...--+|+++.+..+|..++ .++...++..|.+|+.+...|+...-..|.+
T Consensus 161 ~~~~~~~~~~~~g~i~~Lv~lL~~~~-----------------------~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l 217 (530)
T 1wa5_B 161 GTSAQTKVVVDADAVPLFIQLLYTGS-----------------------VEVKEQAIWALGNVAGDSTDYRDYVLQCNAM 217 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHHHHCC-----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCC-----------------------HHHHHHHHHHHHHHhCCCccchHHHHHcCcH
Confidence 42111111112688888888887531 1456788999999998755555543445999
Q ss_pred hhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHH
Q 003365 492 PKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGI 571 (826)
Q Consensus 492 sKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi 571 (826)
+.++.+... . ...+...++..|..|+...+..-. ..+ ...++..|..+|.+. +++.+..|.
T Consensus 218 ~~L~~ll~~-------~-----~~~v~~~a~~~L~~L~~~~~~~~~---~~~--~~~~l~~L~~lL~~~--d~~v~~~a~ 278 (530)
T 1wa5_B 218 EPILGLFNS-------N-----KPSLIRTATWTLSNLCRGKKPQPD---WSV--VSQALPTLAKLIYSM--DTETLVDAC 278 (530)
T ss_dssp HHHHHGGGS-------C-----CHHHHHHHHHHHHHHHCCSSSCCC---HHH--HGGGHHHHHHHTTCC--CHHHHHHHH
T ss_pred HHHHHHhcc-------C-----CHHHHHHHHHHHHHHhCCCCCCCc---HHH--HHhHHHHHHHHHcCC--CHHHHHHHH
Confidence 999976632 1 124557788899999876422111 111 235777888888765 489999999
Q ss_pred HHHHhccCCcc-ccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc
Q 003365 572 DILTSLALEED-ATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV 650 (826)
Q Consensus 572 ~ILt~LA~D~~-~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d 650 (826)
++|.+|+-..+ ..+.+.. .+++..|+.. +.. .+..++..|..+|..|+..+......++..+.++.|+.+|.+
T Consensus 279 ~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~l-L~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 352 (530)
T 1wa5_B 279 WAISYLSDGPQEAIQAVID-VRIPKRLVEL-LSH----ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS 352 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHH-TTCHHHHHHG-GGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHh-cCcHHHHHHH-HCC----CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC
Confidence 99999986533 2332221 2556777774 443 234588899999999998888888888777899999999987
Q ss_pred --chhHHHHHHHHHHHhhhcccchhhhhhhH-HhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCc-hhhHHHHHhcCC
Q 003365 651 --PLVRVNAARILRNLCASSGADCFNQLRGV-TAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTR-EESSNIFERAGI 726 (826)
Q Consensus 651 --~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l-~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~-edfa~~l~~~~i 726 (826)
+..+..|+..|.|||.+..+ ....+ + ...+|.+++...+.+.+..+..+..-.+++...++ .+..+.+.+.|
T Consensus 353 ~~~~vr~~A~~aL~~l~~~~~~-~~~~~--~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~- 428 (530)
T 1wa5_B 353 PKENIKKEACWTISNITAGNTE-QIQAV--IDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG- 428 (530)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHH-HHHHH--HHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHcCCHH-HHHHH--HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC-
Confidence 46788999999999975432 21111 2 34566666655555555566555555666654333 03333343333
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcC-----------CccHHHHHhhcHHHHHHHH
Q 003365 727 MEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDK-----------ATNVHIFKNLGLEMVLESV 786 (826)
Q Consensus 727 ~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~-----------~~y~~~f~e~~m~eaL~~v 786 (826)
.+..|++.|+.. -|.+|..+++.+..+++.. ..|...|.++|..+.|...
T Consensus 429 ----~l~~L~~ll~~~------~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L 489 (530)
T 1wa5_B 429 ----CIKPLCDLLEIA------DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC 489 (530)
T ss_dssp ----CHHHHHHHTTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGG
T ss_pred ----CHHHHHHHHhCC------CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHH
Confidence 566777777632 4789999998887777653 3477888898888777655
No 8
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.29 E-value=3.9e-10 Score=131.56 Aligned_cols=393 Identities=13% Similarity=0.112 Sum_probs=259.9
Q ss_pred hHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc--
Q 003365 335 VIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGK-- 412 (826)
Q Consensus 335 VtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~-- 412 (826)
+...+++|.|++++-|..++..|..+....+...+.+ ...+.|..||++|... +.+++..||..+..||..
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V----~~~G~Ip~LV~LL~s~---~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDV----RKLKGIPVLVGLLDHP---KKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH----HHTTHHHHHHHGGGCS---SHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHH----HHcCCcHHHHHHHCCC---CHHHHHHHHHHHHHHHccCC
Confidence 4567889999999999999999999886432111212 2347899999999754 479999999999999973
Q ss_pred CCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchh
Q 003365 413 KQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLP 492 (826)
Q Consensus 413 ~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIs 492 (826)
..|...|.. -|+|+.+..||..... .++..+....|-+|+.+++|+..|.+ +-|+
T Consensus 123 ~~nk~~I~~-~GaIp~LV~LL~s~~~----------------------~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp 177 (584)
T 3l6x_A 123 QDNKIAIKN-CDGVPALVRLLRKARD----------------------MDLTEVITGTLWNLSSHDSIKMEIVD--HALH 177 (584)
T ss_dssp HHHHHHHHH-TTHHHHHHHHHHHCCS----------------------HHHHHHHHHHHHHHTTSGGGHHHHHH--HTHH
T ss_pred HHHHHHHHH-cCCHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHHhCCchhhHHHHh--ccHH
Confidence 445555655 4999999999986422 13455677799999999999999984 3478
Q ss_pred hhhcccc--cchhhhcc---cC-CChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHcc----CCC
Q 003365 493 KIIDFTH--AEESLLRN---EH-DTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLH----GEK 562 (826)
Q Consensus 493 KII~ft~--~~~~ll~~---~~-~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~----~~~ 562 (826)
.++.... .+...... .. ....+..+.+.+..+|+.|++.. ..-|+.|-+...++..|..+|+. +..
T Consensus 178 ~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~----~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~ 253 (584)
T 3l6x_A 178 ALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSER----SEARRKLRECDGLVDALIFIVQAEIGQKDS 253 (584)
T ss_dssp HHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSC----HHHHHHHHHSTTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCC----HHHHHHHHHcCCcHHHHHHHHHHhhcccCc
Confidence 8877541 11000000 00 00123577889999999999863 33578888888888888888874 345
Q ss_pred ChHHHHHHHHHHHhccCCcc--cc------c------------cccch-----hhHHHHHHHHHhcCCCCCchhhHHHHH
Q 003365 563 HPLLQKLGIDILTSLALEED--AT------E------------RIGGT-----GGMLKELFNILFKEGMPENQNCVRIAA 617 (826)
Q Consensus 563 ~~eLq~lAi~ILt~LA~D~~--~r------e------------~Ig~~-----~~iI~~L~~iFl~~~~~~~~~~lr~~A 617 (826)
+.+.++.|+.+|+||+..-+ .. + .-++. ...|+.|+..+-... ...++..|
T Consensus 254 ~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~----~~~v~E~A 329 (584)
T 3l6x_A 254 DSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK----TPAILEAS 329 (584)
T ss_dssp SCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCC----CHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCC----CHHHHHHH
Confidence 67889999999999975421 00 0 01111 134677777543332 23466688
Q ss_pred HHHHHHHhccCc---chHHHHHh-hhhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHh
Q 003365 618 GEALAMLALDSK---SNCHRILK-LKVVDKLVETLAV--PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAIT 691 (826)
Q Consensus 618 GeALamLa~es~---~Nc~~ILk-e~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~ 691 (826)
..||..|+..+. .....+++ +..+..|+.+|.. +..+..|+..|+|||.+.... ..+ -..++|.+.+-..
T Consensus 330 a~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~--~~I--~~g~ip~LV~LL~ 405 (584)
T 3l6x_A 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK--ELI--GKHAIPNLVKNLP 405 (584)
T ss_dssp HHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH--HHH--HHHHHHHHHHTSS
T ss_pred HHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH--HHH--HhCCHHHHHHHhc
Confidence 899999986541 22233444 4889999999986 578889999999999875422 111 2556776665554
Q ss_pred chhhh-----HHHHHHHhHHHHhhcCCc-hhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHh
Q 003365 692 SEDYK-----LQEVMIGLAAQVFRFMTR-EESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMR 765 (826)
Q Consensus 692 ~~e~k-----~LE~ligLa~qIc~~i~~-edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~ 765 (826)
..+.. ..|+..+....+.+++.. .+-++.+.+.| -+.+|+++|+... ..|+++|.+...+-.|..
T Consensus 406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g-----~I~~Lv~LL~s~~----~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 406 GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQ-----GIEKLVLINKSGN----RSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-----HHHHHHHHHTCSS----SCHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCC-----ChHHHHHHHhCCC----CChHHHHHHHHHHHHHHc
Confidence 43211 234444444444443321 34455555444 6788999987432 478999999997777765
Q ss_pred cCCccHHHHHhhcHHH
Q 003365 766 DKATNVHIFKNLGLEM 781 (826)
Q Consensus 766 ~~~~y~~~f~e~~m~e 781 (826)
+..+.+.|++.|+.+
T Consensus 477 -~~elr~~~kk~G~~~ 491 (584)
T 3l6x_A 477 -YKELRKPLEKEGWKK 491 (584)
T ss_dssp -SHHHHHHHHTTTCCG
T ss_pred -CHHHHHHHHHcCCCH
Confidence 466777777776654
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.26 E-value=3.8e-10 Score=135.91 Aligned_cols=346 Identities=15% Similarity=0.163 Sum_probs=240.6
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhcccccc
Q 003365 379 SVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANY 458 (826)
Q Consensus 379 ~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~ 458 (826)
+.+..|+++|... +.|.++|..|++-+++|+.+......+..-+|+++.+-.||..++.
T Consensus 377 ~Lv~~l~~lL~~~-~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~-------------------- 435 (810)
T 3now_A 377 KLAEACRRFLIKP-GKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ-------------------- 435 (810)
T ss_dssp HHHHHHHHHHHCS-SCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCG--------------------
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCCh--------------------
Confidence 3466788888754 2467899999999999998766666666668999999999985421
Q ss_pred CcchhhhhHHHHHHHHhhccc---------------------------------cccccccccCchhhhhcccccchhhh
Q 003365 459 GFWTFNHLGLLILKKLARNHD---------------------------------NCGKIGNTRGLLPKIIDFTHAEESLL 505 (826)
Q Consensus 459 ~~~~L~~~GL~IL~kLA~D~~---------------------------------NC~~I~~t~gLIsKII~ft~~~~~ll 505 (826)
.+....+.+|.+|+.+.+ +|..|.++ |.+|.++.+....+
T Consensus 436 ---~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea-GaVp~LV~LL~s~s--- 508 (810)
T 3now_A 436 ---SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE-GITTALCALAKTES--- 508 (810)
T ss_dssp ---GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT-THHHHHHHHHTCCC---
T ss_pred ---HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC-cCHHHHHHHHcCCC---
Confidence 223345677777775321 13555555 78888886553211
Q ss_pred cccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccc
Q 003365 506 RNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATE 585 (826)
Q Consensus 506 ~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re 585 (826)
..+-+.+..+|..|+.. ...|..|.++ .++..|..+|..+. ++.|+.|+..|.+|+.+.+...
T Consensus 509 ---------~~vqe~Aa~aL~NLA~d-----~~~r~~Vv~~-Gaip~Lv~LL~s~~--~~~k~~Aa~AL~nL~~~~~p~~ 571 (810)
T 3now_A 509 ---------HNSQELIARVLNAVCGL-----KELRGKVVQE-GGVKALLRMALEGT--EKGKRHATQALARIGITINPEV 571 (810)
T ss_dssp ---------HHHHHHHHHHHHHHHTS-----HHHHHHHHHT-THHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHSCHHH
T ss_pred ---------HHHHHHHHHHHHHHcCC-----HHHHHHHHHC-CCHHHHHHHHccCC--HHHHHHHHHHHHHHhcCCChhh
Confidence 23346788889999754 2368888887 78999999998654 7889999999999998766544
Q ss_pred cccc--hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHH
Q 003365 586 RIGG--TGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARIL 661 (826)
Q Consensus 586 ~Ig~--~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL 661 (826)
.++. ..+.|..|++ ++..+ .....+..|..||.+|+..++.|+..|.++..++.|+..|.+ +..+..|++.|
T Consensus 572 ~~~~~~~~~aIppLv~-LL~~~---~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L 647 (810)
T 3now_A 572 SFSGQRSLDVIRPLLN-LLQQD---CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL 647 (810)
T ss_dssp HTTTHHHHHTHHHHHH-TTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred hhcchhhhcHHHHHHH-HhCCC---CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4432 2346788888 55532 122234579999999999999999999998889999998865 57788999999
Q ss_pred HHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhh
Q 003365 662 RNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRK 741 (826)
Q Consensus 662 ~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~ 741 (826)
.||+.+. +....+-+-...+|-.+.-+-..+.+..+...+.-+.|+.. +++.-...++.. .++..|++.|..
T Consensus 648 ~NLa~~~--~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~-----g~I~~Lv~LL~s 719 (810)
T 3now_A 648 CNLVMSE--DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIA-----SWLDILHTLIAN 719 (810)
T ss_dssp HHHTTSH--HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTST-----THHHHHHHHHTC
T ss_pred HHHhCCh--HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHc-----CCHHHHHHHHCC
Confidence 9999743 22211111124555444444444556666666666666653 233333334322 367788888872
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHhcCCccHHHHHhhcHHHHHHHHH
Q 003365 742 YQHPPIKVPRIRRYAIELAIWMMRDKATNVHIFKNLGLEMVLESVI 787 (826)
Q Consensus 742 n~~Pt~~~prIRR~~vE~~I~mm~~~~~y~~~f~e~~m~eaL~~v~ 787 (826)
.-+.+++.++..+-.+..++..++..+.++|..+.|....
T Consensus 720 ------~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL 759 (810)
T 3now_A 720 ------PSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLG 759 (810)
T ss_dssp ------SSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSC
T ss_pred ------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 3678999999988888888778899999999888776654
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.25 E-value=7e-10 Score=126.02 Aligned_cols=394 Identities=14% Similarity=0.122 Sum_probs=242.9
Q ss_pred cchhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCc---------ccHHHHHHH
Q 003365 332 MDMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDP---------QEEEIRRSA 402 (826)
Q Consensus 332 ~~LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~---------~d~eiR~~A 402 (826)
+..+..-+..+.|+.+++ -.|-|-++-.+.+.+..+. ..+.+..||+.|..... .++++|..|
T Consensus 31 ~~~~~~l~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~~-----~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a 102 (458)
T 3nmz_A 31 VEMVYSLLSMLGTHDKDD---MSRTLLAMSSSQDSCISMR-----QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA 102 (458)
T ss_dssp --------------CCHH---HHHHHHHHHSSTTHHHHHH-----HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHH---HHHHHHHHHcCCcHHHHHH-----HCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence 333333333445555553 3344444444444222222 35789999999986433 567999999
Q ss_pred HHHHHHHhccCCCceEEecccchhHH----------hhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHH
Q 003365 403 AEILSKLAGKKQNSLRVAGIPGAMES----------ISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILK 472 (826)
Q Consensus 403 ArIva~LA~~~~nsLrv~~iPGaiq~----------IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~ 472 (826)
|+.+..+|.......++..--|.++. .-.+|....+ +.|+... ..++ ..+ +...+....|.
T Consensus 103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~--~~~--~~~~qAv~aL~ 173 (458)
T 3nmz_A 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP---GMDQDKN--PMPA--PVE--HQICPAVCVLM 173 (458)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS---SSCCCSC--C--C--CCT--TTTHHHHHHHH
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc---ccccccC--Cccc--hhh--HHHHHHHHHHH
Confidence 99999999865444444322233311 1111222110 0010000 0010 111 33568899999
Q ss_pred HHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhh
Q 003365 473 KLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISN 552 (826)
Q Consensus 473 kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsN 552 (826)
|++.|++|...|.+. |.++.++.+....... +..........+...+...|..|+.... .-|..|.....++..
T Consensus 174 nls~~~e~R~~i~~~-G~l~~Lv~LL~~~~~~-~~~~~~~~~~~l~~~Aa~aL~nLa~~~~----~~k~~i~~~~GaIp~ 247 (458)
T 3nmz_A 174 KLSFDEEHRHAMNEL-GGLQAIAELLQVDCEM-YGLTNDHYSITLRRYAGMALTNLTFGDV----ANKATLCSMKGCMRA 247 (458)
T ss_dssp HHTTSHHHHHHHHHT-THHHHHHHHHHHHHHH-STTCCCHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHCHHHHHH
T ss_pred HhcCCHHHHHHHHHC-CCHHHHHHHHhhhhcc-cccccCCCCHHHHHHHHHHHHHHhCCCc----ccHHHHHHcCCcHHH
Confidence 999998888888865 8899999876421110 0000112334566788999999986532 235566666677889
Q ss_pred HHHHHccCCCChHHHHHHHHHHHhccCC--ccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcc
Q 003365 553 IRDILLHGEKHPLLQKLGIDILTSLALE--EDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKS 630 (826)
Q Consensus 553 L~~IL~~~~~~~eLq~lAi~ILt~LA~D--~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~ 630 (826)
|.+.|+. .+++.++.|++.|.+|+.+ ++.|+.|... +.|..|++..+... +..++..|..||..|+..+.+
T Consensus 248 LV~LL~s--~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~-GaI~~LV~lLl~s~----~~~v~~~A~~aL~nLs~~~~~ 320 (458)
T 3nmz_A 248 LVAQLKS--ESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVK----KESTLKSVLSALWNLSAHCTE 320 (458)
T ss_dssp HHHGGGC--SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT-THHHHHHHHHTTCC----SHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHhC--CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-CCHHHHHHHHhcCC----CHHHHHHHHHHHHHHccCCHH
Confidence 9999985 4589999999999999984 5667777754 45588888665542 234666888999999988888
Q ss_pred hHHHHH-hhhhHHHHHHhhccc------hhHHHHHHHHHHHhhh--cccchhhhhhhHHhHHHHHHHHHhchhhhHHHHH
Q 003365 631 NCHRIL-KLKVVDKLVETLAVP------LVRVNAARILRNLCAS--SGADCFNQLRGVTAAAPTILKAITSEDYKLQEVM 701 (826)
Q Consensus 631 Nc~~IL-ke~vi~~Lv~mL~d~------~~r~~AA~IL~nLC~~--s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~l 701 (826)
|...|. ..+.+.-|+.+|.++ +.+..|+.+|+||+.| ..++....+.+ ..++|..++-+.+.+.+..+-.
T Consensus 321 nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~~v~~~A 399 (458)
T 3nmz_A 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNA 399 (458)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCChHHHHHH
Confidence 988887 458999999999752 2678899999999986 33443322221 3467777776666666667766
Q ss_pred HHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCc
Q 003365 702 IGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKAT 769 (826)
Q Consensus 702 igLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~~ 769 (826)
.+.-..++.- ++ +-.+.+-+.| .+..|+++|.. .-+++++.+....-.+..+++.
T Consensus 400 ~~aL~nLa~~-~~-~~~~~i~~~G-----~I~~Lv~LL~s------~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 400 CGTLWNLSAR-NP-KDQEALWDMG-----AVSMLKNLIHS------KHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHHHHSS-CH-HHHHHHHHHT-----HHHHHHTTTTC------SSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHcC-CH-HHHHHHHHCC-----CHHHHHHHHhC------CCHHHHHHHHHHHHHHHcCCHh
Confidence 6666666632 33 4444444444 45667777652 2578999999988888887764
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.23 E-value=7.4e-10 Score=123.95 Aligned_cols=327 Identities=15% Similarity=0.140 Sum_probs=216.4
Q ss_pred chhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc
Q 003365 333 DMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGK 412 (826)
Q Consensus 333 ~LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~ 412 (826)
..+..-+++|.++.+.-+...+..|..+...++.+ .++...++.+..|+++|... .|.++|..|++.+.+|+.+
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~----~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR----HAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH----HHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH----HHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcC
Confidence 34566677888888888999999999998765422 23455678999999999632 3578999999999999986
Q ss_pred CCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchh
Q 003365 413 KQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLP 492 (826)
Q Consensus 413 ~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIs 492 (826)
..+.-.+.. .|+++.+..+|..++ .++...++.+|.+|+.+.+++++.-...|.++
T Consensus 91 ~~~~~~i~~-~g~i~~L~~lL~~~~-----------------------~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 146 (529)
T 1jdh_A 91 REGLLAIFK-SGGIPALVKMLGSPV-----------------------DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ 146 (529)
T ss_dssp HHHHHHHHH-TTHHHHHHHHTTCSC-----------------------HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHH
T ss_pred chhHHHHHH-cCCHHHHHHHHcCCC-----------------------HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHH
Confidence 544444444 488998888887532 14567889999999997666665444459999
Q ss_pred hhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHH
Q 003365 493 KIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGID 572 (826)
Q Consensus 493 KII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ 572 (826)
+++.+....+ ..+...+...|..|+... ...|..|.+. ..+..|..+|+++. ....+..+..
T Consensus 147 ~L~~ll~~~~------------~~~~~~~~~~L~~la~~~----~~~~~~i~~~-~~i~~L~~ll~~~~-~~~~~~~a~~ 208 (529)
T 1jdh_A 147 KMVALLNKTN------------VKFLAITTDCLQILAYGN----QESKLIILAS-GGPQALVNIMRTYT-YEKLLWTTSR 208 (529)
T ss_dssp HHHHGGGCCC------------HHHHHHHHHHHHHHHTTC----HHHHHHHHHT-THHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHHHhcCC------------HHHHHHHHHHHHHHHhCC----HHHHHHHHHC-CCHHHHHHHHHhCC-hHHHHHHHHH
Confidence 9998764311 122344566777777632 3344555555 56778888887653 4567777888
Q ss_pred HHHhccCCccccccccchhhHHHHHHHHHhcCC----------------------------------CCCchhhHHHHHH
Q 003365 573 ILTSLALEEDATERIGGTGGMLKELFNILFKEG----------------------------------MPENQNCVRIAAG 618 (826)
Q Consensus 573 ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~----------------------------------~~~~~~~lr~~AG 618 (826)
+|.+|+.+++.++.+... +.+..|+..+-+.+ ..+.+..++..|.
T Consensus 209 ~L~~l~~~~~~~~~~~~~-g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 287 (529)
T 1jdh_A 209 VLKVLSVCSSNKPAIVEA-GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAA 287 (529)
T ss_dssp HHHHHTTSTTHHHHHHHT-THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHC-CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHH
Confidence 888888777666554332 23333333211100 0012345778899
Q ss_pred HHHHHHhccCcchHHHHHhhhhHHHHHHhhcc----chhHHHHHHHHHHHhhhccc-c-hhhhhhhHHhHHHHHHHHHhc
Q 003365 619 EALAMLALDSKSNCHRILKLKVVDKLVETLAV----PLVRVNAARILRNLCASSGA-D-CFNQLRGVTAAAPTILKAITS 692 (826)
Q Consensus 619 eALamLa~es~~Nc~~ILke~vi~~Lv~mL~d----~~~r~~AA~IL~nLC~~s~~-e-~~~~Lk~l~~alp~VL~~I~~ 692 (826)
.+|..|+..++.|+..+.+.+.++.|+.+|.+ +..+..|+..|.|||.+..+ + +...+- -...+|.+++-+.+
T Consensus 288 ~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~-~~~~i~~L~~lL~~ 366 (529)
T 1jdh_A 288 GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR-LHYGLPVVVKLLHP 366 (529)
T ss_dssp HHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH-HTTCHHHHHHTTST
T ss_pred HHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HcCChhHHHHHhcc
Confidence 99999998888899999888899999999864 47788999999999875332 1 111111 12345554444443
Q ss_pred hhh-hHHHHHHHhHHHHh
Q 003365 693 EDY-KLQEVMIGLAAQVF 709 (826)
Q Consensus 693 ~e~-k~LE~ligLa~qIc 709 (826)
... ...+..++....++
T Consensus 367 ~~~~~v~~~a~~~l~nl~ 384 (529)
T 1jdh_A 367 PSHWPLIKATVGLIRNLA 384 (529)
T ss_dssp TCCHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHh
Confidence 332 45555555555555
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.22 E-value=1.9e-09 Score=125.84 Aligned_cols=342 Identities=17% Similarity=0.165 Sum_probs=234.4
Q ss_pred chhHHHHHhhcCC-CcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 003365 333 DMVIFGMELLDSN-SPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAG 411 (826)
Q Consensus 333 ~LVtFA~dll~S~-S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~ 411 (826)
+.+..-++.|.++ +++.+...++.|..|....+ ....+.. .+.+..|+++|... +.++|..|++++.+|+.
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~----~~~~i~~-~g~i~~Lv~lL~~~---~~~v~~~A~~aL~nL~~ 127 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE----GLLAIFK-SGGIPALVKMLGSP---VDSVLFYAITTLHNLLL 127 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH----HHHHHHT-TTHHHHHHHHTTCS---SHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh----hHHHHHH-cCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHh
Confidence 3456667777654 77889999999998876543 2223333 38899999999754 47899999999999997
Q ss_pred cCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhh-ccccccccccccCc
Q 003365 412 KKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLAR-NHDNCGKIGNTRGL 490 (826)
Q Consensus 412 ~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~-D~~NC~~I~~t~gL 490 (826)
+..+..+...-.|+++.+..+|..++ +++....+.+|.+|+. +++|+..|.+. |.
T Consensus 128 ~~~~~~~~v~~~g~i~~Lv~lL~~~~-----------------------~~~~~~a~~~L~~La~~~~~~~~~i~~~-g~ 183 (644)
T 2z6h_A 128 HQEGAKMAVRLAGGLQKMVALLNKTN-----------------------VKFLAITTDCLQILAYGNQESKLIILAS-GG 183 (644)
T ss_dssp HSTTHHHHHHHTTHHHHHHHGGGCCC-----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHT-TH
T ss_pred CcchhHHHHHHCCChHHHHHHHCcCC-----------------------HHHHHHHHHHHHHHHhcCcHHHHHHHHc-CC
Confidence 53333222223789999999987641 1334556778999996 88888888776 78
Q ss_pred hhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHH
Q 003365 491 LPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLG 570 (826)
Q Consensus 491 IsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lA 570 (826)
+++++.+.... . ...+...++++|..|+..+ ..|..+.+. .++..|.++|+++ ++++++.|
T Consensus 184 v~~Lv~lL~~~-------~----~~~~~~~a~~~L~nLs~~~-----~~~~~l~~~-g~l~~L~~ll~~~--~~~~~~~a 244 (644)
T 2z6h_A 184 PQALVNIMRTY-------T----YEKLLWTTSRVLKVLSVCS-----SNKPAIVEA-GGMQALGLHLTDP--SQRLVQNC 244 (644)
T ss_dssp HHHHHHHHTTC-------C----CHHHHHHHHHHHHHHTTCT-----THHHHHHHT-THHHHHHTTTTCS--CHHHHHHH
T ss_pred hHHHHHHHHcC-------C----hHHHHHHHHHHHHHHhcCc-----ccHHHHHHC-CCHHHHHHHHhcC--CHHHHHHH
Confidence 99999766321 1 1345577888999998653 346667665 5777888887765 58999999
Q ss_pred HHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc
Q 003365 571 IDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV 650 (826)
Q Consensus 571 i~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d 650 (826)
+.+|.+|+-+.... ....++|..|+..+ .. .+..++..|..+|..|+..++.|+..+.+.+.++.|+.+|.+
T Consensus 245 ~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL-~~----~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 245 LWTLRNLSDAATKQ---EGMEGLLGTLVQLL-GS----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHHHHHGGGCTTC---CSCHHHHHHHHHHT-TC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhh---hhhhhHHHHHHHHH-cC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence 99999998554322 22346788888854 32 234578899999999999888999999888899999999864
Q ss_pred ----chhHHHHHHHHHHHhhhccc-chhhhhhhHHhHHHHHHHHHhchh-hhHHHHHHHhHHHHhhcCCchhhHHHHHhc
Q 003365 651 ----PLVRVNAARILRNLCASSGA-DCFNQLRGVTAAAPTILKAITSED-YKLQEVMIGLAAQVFRFMTREESSNIFERA 724 (826)
Q Consensus 651 ----~~~r~~AA~IL~nLC~~s~~-e~~~~Lk~l~~alp~VL~~I~~~e-~k~LE~ligLa~qIc~~i~~edfa~~l~~~ 724 (826)
+..+..|+..|.|||.+..+ +.....-.-...+|.+.+-+.+.+ ....+..++.-..|+.- ++.- +.+...
T Consensus 317 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~--~~~~-~~i~~~ 393 (644)
T 2z6h_A 317 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--PANH-APLREQ 393 (644)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS--GGGH-HHHHHT
T ss_pred cCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC--HHHH-HHHHHc
Confidence 47889999999999975432 221110001345666555444443 35666667766666642 3332 333333
Q ss_pred CCChHHHHHHHHHHHhh
Q 003365 725 GIMEIDLANTLVQILRK 741 (826)
Q Consensus 725 ~i~~~~fv~kLv~iL~~ 741 (826)
| .+..|++.|+.
T Consensus 394 ~-----~i~~Lv~lL~~ 405 (644)
T 2z6h_A 394 G-----AIPRLVQLLVR 405 (644)
T ss_dssp T-----HHHHHHHHHHH
T ss_pred C-----CHHHHHHHHhc
Confidence 3 45566666654
No 13
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.20 E-value=1.3e-09 Score=130.82 Aligned_cols=329 Identities=15% Similarity=0.165 Sum_probs=227.5
Q ss_pred HHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceE
Q 003365 339 MELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLR 418 (826)
Q Consensus 339 ~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLr 418 (826)
++.|.|.+.+.+..-++.+... .+. .+. .+.+..|+++|.. .|.++|..|+.++.+|+.+..+...
T Consensus 121 v~~L~~~~~~~r~~a~~~l~~~-------~~~--~i~--~g~ip~Lv~lL~~---~d~~vr~~A~~~L~~L~~~~~~~~~ 186 (780)
T 2z6g_A 121 VQRLAEPSQMLKHAVVNLINYQ-------DDA--ELA--TRAIPELTKLLND---EDQVVVNKAAVMVHQLSKKEASRHA 186 (780)
T ss_dssp -----CCSCHHHHHHHHHHHHH-------HHH--HHH--HHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHhcCccHHHHHHHHHHHHhh-------hHH--HHH--hCCHHHHHHHHCC---CCHHHHHHHHHHHHHHhCCChhHHH
Confidence 4455555555455545554421 011 232 6889999999973 3679999999999999986545555
Q ss_pred EecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhccc
Q 003365 419 VAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFT 498 (826)
Q Consensus 419 v~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft 498 (826)
+...||++..+..+|..+.+ .+........|.+|+.+.+|...|.+. |.|+.++.++
T Consensus 187 i~~~~~~i~~Lv~~L~~~~d----------------------~~vr~~Aa~aL~~Ls~~~~~~~~i~~~-g~I~~Lv~lL 243 (780)
T 2z6g_A 187 IMRSPQMVSAIVRTMQNTND----------------------VETARCTSGTLHNLSHHREGLLAIFKS-GGIPALVNML 243 (780)
T ss_dssp HTTCHHHHHHHHHHHHHCCC----------------------HHHHHHHHHHHHHHHTSHHHHHHHHHT-THHHHHHHHT
T ss_pred HHhccChHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHHhCCchhHHHHHHc-CCHHHHHHHH
Confidence 66668999999888875422 134567888999999998998888876 9999999877
Q ss_pred ccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhcc
Q 003365 499 HAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLA 578 (826)
Q Consensus 499 ~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA 578 (826)
... ...+...++..|..|++...+.. +.+.+. .++..|.+.|.++ +.+++..|+++|.+|+
T Consensus 244 ~~~------------~~~v~~~A~~aL~nLa~~~~~~~----~~v~~~-g~v~~Lv~lL~~~--~~~v~~~a~~aL~~La 304 (780)
T 2z6g_A 244 GSP------------VDSVLFHAITTLHNLLLHQEGAK----MAVRLA-GGLQKMVALLNKT--NVKFLAITTDCLQILA 304 (780)
T ss_dssp TCS------------CHHHHHHHHHHHHHHHHHSTTHH----HHHHHT-THHHHHHHGGGCC--CHHHHHHHHHHHHHHH
T ss_pred cCC------------CHHHHHHHHHHHHHHhCCChhhH----HHHHHc-CCHHHHHHHHhcC--CHHHHHHHHHHHHHHh
Confidence 331 13456789999999998755433 344333 6788888888763 4788999999999999
Q ss_pred C-CccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHH
Q 003365 579 L-EEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRV 655 (826)
Q Consensus 579 ~-D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~ 655 (826)
. +++.+..|...+ .+..|+.. +... +....+..|..+|..|+. +..|+..|++..++..|+.+|.+ +..+.
T Consensus 305 ~~~~e~~~~i~~~~-~i~~Lv~l-L~~~---~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~ 378 (780)
T 2z6g_A 305 YGNQESKLIILASG-GPQALVNI-MRTY---TYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 378 (780)
T ss_dssp TTCHHHHHHHHTTT-HHHHHHHH-HTTC---CCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHH
T ss_pred cCChHHHHHHHHcC-CHHHHHHH-HhcC---CHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHH
Confidence 7 466676666654 46888884 4432 223355568889999984 77899999888999999999976 46788
Q ss_pred HHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHH
Q 003365 656 NAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTL 735 (826)
Q Consensus 656 ~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kL 735 (826)
.|+..|.|||.+.... ......+|.+++.+-+.+.+..+...+.-..++.- +.+..+.+...| .+.+|
T Consensus 379 ~a~~~L~~L~~~~~~~-----~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~--~~~~~~~i~~~g-----~i~~L 446 (780)
T 2z6g_A 379 NCLWTLRNLSDAATKQ-----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQVG-----GIEAL 446 (780)
T ss_dssp HHHHHHHHHHTTCTTC-----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CHHHHHHHHTTT-----HHHHH
T ss_pred HHHHHHHHHhccchhh-----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--CHHHHHHHHHCC-----CHHHH
Confidence 9999999999865331 11456777777776666667777777766677653 233344444333 45666
Q ss_pred HHHHhh
Q 003365 736 VQILRK 741 (826)
Q Consensus 736 v~iL~~ 741 (826)
++.|..
T Consensus 447 v~lL~~ 452 (780)
T 2z6g_A 447 VRTVLR 452 (780)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 776664
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.19 E-value=3.7e-10 Score=113.53 Aligned_cols=241 Identities=19% Similarity=0.235 Sum_probs=179.0
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhcccccc
Q 003365 379 SVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANY 458 (826)
Q Consensus 379 ~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~ 458 (826)
+.+..|+++|...+ .++|..|++++.+++.+.........=.|+++.+..+|..++
T Consensus 2 ~~i~~L~~~L~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--------------------- 57 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD---SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD--------------------- 57 (252)
T ss_dssp CHHHHHHHHTTCSC---HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC---------------------
T ss_pred CcHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC---------------------
Confidence 35788999997543 789999999999999753211111111488888888887542
Q ss_pred CcchhhhhHHHHHHHHhhc-cccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhh
Q 003365 459 GFWTFNHLGLLILKKLARN-HDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGE 537 (826)
Q Consensus 459 ~~~~L~~~GL~IL~kLA~D-~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~ 537 (826)
.++....+.+|.+|+.+ ++++..+.+. |.++.++.+... . ...+...++.+|..|+... .
T Consensus 58 --~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~ll~~-------~-----~~~v~~~a~~~L~~l~~~~----~ 118 (252)
T 4hxt_A 58 --SEVQKEAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTS-------T-----DSEVQKEAARALANIASGP----D 118 (252)
T ss_dssp --HHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTTC-------S-----SHHHHHHHHHHHHHHTTSC----H
T ss_pred --HHHHHHHHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHcC-------C-----CHHHHHHHHHHHHHHHcCC----H
Confidence 14567789999999986 7777777655 889999976632 1 1345678999999998543 2
Q ss_pred HHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCcccc-ccccchhhHHHHHHHHHhcCCCCCchhhHHHH
Q 003365 538 HLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDAT-ERIGGTGGMLKELFNILFKEGMPENQNCVRIA 616 (826)
Q Consensus 538 ~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~r-e~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~ 616 (826)
..++.+.+. ..+..|.++|+++. ++.++.|+.+|.+|+.+.+.. +.+.. .+++..|+..+ .+ .+..++..
T Consensus 119 ~~~~~~~~~-~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll-~~----~~~~v~~~ 189 (252)
T 4hxt_A 119 EAIKAIVDA-GGVEVLVKLLTSTD--SEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLL-TS----TDSEVQKE 189 (252)
T ss_dssp HHHHHHHHT-THHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHT-TC----SCHHHHHH
T ss_pred HHHHHHHHC-CCHHHHHHHHcCCC--HHHHHHHHHHHHHHHcCCHHHHHHHHH-CcCHHHHHHHH-CC----CCHHHHHH
Confidence 344555554 67888888888654 899999999999999855443 34333 56778888854 32 22468889
Q ss_pred HHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccc
Q 003365 617 AGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCASSGAD 671 (826)
Q Consensus 617 AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e 671 (826)
|..+|..|+..++.++..+...+.++.|+.++.+ ++.+..|+.+|.||+.+...+
T Consensus 190 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 190 AARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 9999999998888888888888999999999986 578899999999999876644
No 15
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.18 E-value=3.5e-09 Score=119.26 Aligned_cols=368 Identities=14% Similarity=0.127 Sum_probs=244.4
Q ss_pred HHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc-CCC
Q 003365 337 FGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGK-KQN 415 (826)
Q Consensus 337 FA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~-~~n 415 (826)
.-+.+|.|++++-|..+++.|..+....+...+.+. ..+.+..|+++|.. .+.+++..|+..+.+|+.+ ..|
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~----~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVY----QLGGICKLVDLLRS---PNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHH----HTTHHHHHHHHTTS---SCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHH----HcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCHHH
Confidence 357889999999999999999999865543222222 34779999999984 3468999999999999975 445
Q ss_pred ceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhhh
Q 003365 416 SLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKII 495 (826)
Q Consensus 416 sLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII 495 (826)
...|.. -|+++.+..||...++ .++.......|.+|+.+++|+..|.+ |.|+.++
T Consensus 79 k~~i~~-~G~i~~Lv~lL~~~~~----------------------~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv 133 (457)
T 1xm9_A 79 KLETRR-QNGIREAVSLLRRTGN----------------------AEIQKQLTGLLWNLSSTDELKEELIA--DALPVLA 133 (457)
T ss_dssp HHHHHH-TTCHHHHHHHHTTCCC----------------------HHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHH
T ss_pred HHHHHH-cCCHHHHHHHHhhCCC----------------------HHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHH
Confidence 555554 4999999999973221 14566788899999999888887876 9999999
Q ss_pred ccccc------chhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHcc----CCCChH
Q 003365 496 DFTHA------EESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLH----GEKHPL 565 (826)
Q Consensus 496 ~ft~~------~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~----~~~~~e 565 (826)
.++.. ++..... .+.....+++.+...|+.|++. ..-|+.|.+.+.++..|...|++ +..+.+
T Consensus 134 ~ll~~~~s~~~~~~~~~~--~e~~~~~v~~~a~~aL~nLs~~-----~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 206 (457)
T 1xm9_A 134 DRVIIPFSGWCDGNSNMS--REVVDPEVFFNATGCLRNLSSA-----DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK 206 (457)
T ss_dssp HHTTHHHHTCC-----------CCCHHHHHHHHHHHHHHTTS-----HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCT
T ss_pred HHHhccccccccCccchh--cccccHHHHHHHHHHHHHHccC-----HHHHHHHHHcCCCHHHHHHHHHhhccccCCchH
Confidence 88732 1110000 0002457888999999999964 34678888877889999999875 233456
Q ss_pred HHHHHHHHHHhccCCc------c---------------------------------------------ccccccchhhHH
Q 003365 566 LQKLGIDILTSLALEE------D---------------------------------------------ATERIGGTGGML 594 (826)
Q Consensus 566 Lq~lAi~ILt~LA~D~------~---------------------------------------------~re~Ig~~~~iI 594 (826)
..+.|+.+|++|+.-- . ..+.+-. .+++
T Consensus 207 ~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l 285 (457)
T 1xm9_A 207 SVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAI 285 (457)
T ss_dssp THHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGS-HHHH
T ss_pred HHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchH
Confidence 7778999999986210 0 0000111 2355
Q ss_pred HHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchH----HHHH-hhhhHHHHHHhhcc--chhHHHHHHHHHHHhhh
Q 003365 595 KELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNC----HRIL-KLKVVDKLVETLAV--PLVRVNAARILRNLCAS 667 (826)
Q Consensus 595 ~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc----~~IL-ke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~ 667 (826)
+.|+..+.+.+ ....+..|..||..|+..+...+ ..+. +++.+..|+.+|.+ ++.+..|+..|+||+.+
T Consensus 286 ~~L~~lL~~~~----~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 286 RTYLNLMGKSK----KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHCC----CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhcC----CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 66776444332 23466778999999997664432 2334 34889999999986 56788999999999985
Q ss_pred cccchhhhhhhHHhHHHHHHHHHhchh------hhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhh
Q 003365 668 SGADCFNQLRGVTAAAPTILKAITSED------YKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRK 741 (826)
Q Consensus 668 s~~e~~~~Lk~l~~alp~VL~~I~~~e------~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~ 741 (826)
.+-. .-+ -..++|...+-....+ .+.+.+.++-..+|+.- ..+.++.+.+. .-+.+|+++++.
T Consensus 362 ~~~~--~~i--~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~--~~~~~~~i~~~-----g~l~~L~~L~~~ 430 (457)
T 1xm9_A 362 PLLH--RVM--GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAS--QPQLAKQYFSS-----SMLNNIINLCRS 430 (457)
T ss_dssp GGGH--HHH--HHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTT--CTHHHHHHCCH-----HHHHHHHHHHHC
T ss_pred HHHH--HHH--HHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHc-----CCHHHHHHHHcC
Confidence 4221 111 1356777665554432 23444555544555542 23566666543 467889998883
Q ss_pred cCCCCCCCChHHHHHHHHHHHHH
Q 003365 742 YQHPPIKVPRIRRYAIELAIWMM 764 (826)
Q Consensus 742 n~~Pt~~~prIRR~~vE~~I~mm 764 (826)
. .-++|+|.+....-.|-
T Consensus 431 ~-----~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 431 S-----ASPKAAEAARLLLSDMW 448 (457)
T ss_dssp T-----TCHHHHHHHHHHHHTTS
T ss_pred C-----CcHHHHHHHHHHHHHHH
Confidence 3 34589998887554433
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.17 E-value=1.7e-09 Score=122.76 Aligned_cols=322 Identities=16% Similarity=0.186 Sum_probs=219.9
Q ss_pred chhHHHHHhhcCC-CcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 003365 333 DMVIFGMELLDSN-SPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAG 411 (826)
Q Consensus 333 ~LVtFA~dll~S~-S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~ 411 (826)
+++..-+++|.+. +++-+...++.|..+....+...+. ....+.+..|+++|.- .+.++|..|++.+.+|+.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~----~~~~g~i~~Lv~lL~~---~~~~vr~~A~~aL~~l~~ 202 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV----VVDADAVPLFIQLLYT---GSVEVKEQAIWALGNVAG 202 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH----HHHTTCHHHHHHHHHH---CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH----HHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhC
Confidence 4567777888886 7788999999999998743211111 1123668888888873 357999999999999997
Q ss_pred cCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhcc-ccccccccccCc
Q 003365 412 KKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNH-DNCGKIGNTRGL 490 (826)
Q Consensus 412 ~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~-~NC~~I~~t~gL 490 (826)
+....-....-.|+++.+..+|.... .++....+..|.+|+.+. .++... ...++
T Consensus 203 ~~~~~~~~~~~~~~l~~L~~ll~~~~-----------------------~~v~~~a~~~L~~L~~~~~~~~~~~-~~~~~ 258 (530)
T 1wa5_B 203 DSTDYRDYVLQCNAMEPILGLFNSNK-----------------------PSLIRTATWTLSNLCRGKKPQPDWS-VVSQA 258 (530)
T ss_dssp TCHHHHHHHHHTTCHHHHHHGGGSCC-----------------------HHHHHHHHHHHHHHHCCSSSCCCHH-HHGGG
T ss_pred CCccchHHHHHcCcHHHHHHHhccCC-----------------------HHHHHHHHHHHHHHhCCCCCCCcHH-HHHhH
Confidence 52111111112488888888887521 134566788999999765 444433 33588
Q ss_pred hhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHH
Q 003365 491 LPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLG 570 (826)
Q Consensus 491 IsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lA 570 (826)
++.++.+... . ...+...++.+|..|+....+ .++.+.+. .++..|...|.+. ++..+..|
T Consensus 259 l~~L~~lL~~-------~-----d~~v~~~a~~~L~~L~~~~~~----~~~~~~~~-~~v~~Lv~lL~~~--~~~v~~~a 319 (530)
T 1wa5_B 259 LPTLAKLIYS-------M-----DTETLVDACWAISYLSDGPQE----AIQAVIDV-RIPKRLVELLSHE--STLVQTPA 319 (530)
T ss_dssp HHHHHHHTTC-------C-----CHHHHHHHHHHHHHHHSSCHH----HHHHHHHT-TCHHHHHHGGGCS--CHHHHHHH
T ss_pred HHHHHHHHcC-------C-----CHHHHHHHHHHHHHHhCCCHH----HHHHHHhc-CcHHHHHHHHCCC--ChhhHHHH
Confidence 8888876522 1 134567889999999865432 23444433 6788888888864 48899999
Q ss_pred HHHHHhccCCcc-ccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhc
Q 003365 571 IDILTSLALEED-ATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLA 649 (826)
Q Consensus 571 i~ILt~LA~D~~-~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~ 649 (826)
+.+|.+|+...+ ..+.+.. .+++..|+..+ .. .+..++..|..+|..|+..++.++..++..++++.|+.+|.
T Consensus 320 ~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL-~~----~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 393 (530)
T 1wa5_B 320 LRAVGNIVTGNDLQTQVVIN-AGVLPALRLLL-SS----PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 393 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHT-TC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH-cchHHHHHHHH-cC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 999999986533 2222222 35677777744 33 23468899999999999888888888887789999999987
Q ss_pred c--chhHHHHHHHHHHHhhhccc--chhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhc
Q 003365 650 V--PLVRVNAARILRNLCASSGA--DCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRF 711 (826)
Q Consensus 650 d--~~~r~~AA~IL~nLC~~s~~--e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~ 711 (826)
+ ++.+..|+..|.|||.+..+ ++...+-+ ...+|.++....+.+.+..+..+..-..+++.
T Consensus 394 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVS-QGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHH-TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 5 57888999999999987554 44332221 34666666666666666667666666666654
No 17
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.16 E-value=2.6e-10 Score=125.35 Aligned_cols=273 Identities=15% Similarity=0.195 Sum_probs=197.0
Q ss_pred hhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhC-----CCC---cccHHHHHHHHHHHHHHhccCC-CceEEec
Q 003365 351 LIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLN-----WKD---PQEEEIRRSAAEILSKLAGKKQ-NSLRVAG 421 (826)
Q Consensus 351 L~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~-----wts---~~d~eiR~~AArIva~LA~~~~-nsLrv~~ 421 (826)
...++.|..+...++.|... ...+.++.|++.|. |+. ..+.++|..||.++.+|+.++. +.-.|..
T Consensus 50 ~~A~~aL~nls~d~e~R~~i-----~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 50 CPAVCVLMKLSFDEEHRHAM-----NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp HHHHHHHHHHHTSHHHHHHH-----HHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH-----HHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34577788887665433332 23367777887773 332 2346899999999999996533 2222334
Q ss_pred ccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhh--ccccccccccccCchhhhhcccc
Q 003365 422 IPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLAR--NHDNCGKIGNTRGLLPKIIDFTH 499 (826)
Q Consensus 422 iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~--D~~NC~~I~~t~gLIsKII~ft~ 499 (826)
..|+|..+..||+.++. +........|.+|+. |++|...|.+. |.|+.++.+..
T Consensus 125 ~~GaIp~LV~LL~s~~~-----------------------~v~~~A~~aL~nLs~~~~~~~k~~i~~~-G~Ip~Lv~lL~ 180 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESE-----------------------DLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECAL 180 (354)
T ss_dssp CHHHHHHHHHGGGCSCH-----------------------HHHHHHHHHHHHHHTTCCHHHHHHHHHT-THHHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCCH-----------------------HHHHHHHHHHHHHhccCCHHHHHHHHHC-CCHHHHHHHHh
Confidence 56789999999985421 345567788999997 35566677755 88999997531
Q ss_pred cchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCC--hHHHHHHHHHHHhc
Q 003365 500 AEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKH--PLLQKLGIDILTSL 577 (826)
Q Consensus 500 ~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~--~eLq~lAi~ILt~L 577 (826)
. .. ...+.+.++..|..|++-. ...|.+|.....++..|.+.|.++... .++++.|+.+|++|
T Consensus 181 ~------~~-----~~~~~~~A~~aL~nLs~~~----~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nL 245 (354)
T 3nmw_A 181 E------VK-----KESTLKSVLSALWNLSAHC----TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245 (354)
T ss_dssp H------CC-----CHHHHHHHHHHHHHHHTTC----HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHH
T ss_pred c------CC-----CHHHHHHHHHHHHHHHccC----hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHH
Confidence 1 11 1234567888999998621 223677876678999999999866432 26899999999999
Q ss_pred cC----CccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--c
Q 003365 578 AL----EEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--P 651 (826)
Q Consensus 578 A~----D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~ 651 (826)
+. +++.++.+...+ .|..|+.. +.++ +..++..|.-||..|+..++.|...|.+.+.++.|+.+|.+ +
T Consensus 246 s~~~a~~~~~~~~i~~~g-~i~~Lv~l-L~~~----~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~ 319 (354)
T 3nmw_A 246 SSLIATNEDHRQILRENN-CLQTLLQH-LKSH----SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK 319 (354)
T ss_dssp HHHHTTCHHHHHHHHTTT-HHHHHHHH-TTCS----CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSH
T ss_pred HhhccCCHHHHHHHHHcC-CHHHHHHH-HcCC----ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCH
Confidence 85 777787776644 46888884 4432 24578899999999998899999999888999999999975 5
Q ss_pred hhHHHHHHHHHHHhhhcccchh
Q 003365 652 LVRVNAARILRNLCASSGADCF 673 (826)
Q Consensus 652 ~~r~~AA~IL~nLC~~s~~e~~ 673 (826)
+.+..||..|+||+.+...++.
T Consensus 320 ~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 320 MIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHHHcCCHHHHh
Confidence 7789999999999998665543
No 18
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.14 E-value=4.8e-09 Score=125.97 Aligned_cols=345 Identities=16% Similarity=0.165 Sum_probs=227.8
Q ss_pred hhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccC
Q 003365 334 MVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKK 413 (826)
Q Consensus 334 LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~ 413 (826)
.+..=+.+|.++.+.-+...+..|..+...+.. ...+...++.+..|++.|.-. .+.++|..|++.+.+|+.+.
T Consensus 151 ~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~----~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL~~Ls~~~ 224 (780)
T 2z6g_A 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS----RHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTLHNLSHHR 224 (780)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHH----HHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHTSH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChh----HHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHHHHHhCCc
Confidence 344455677777777889999999999875531 224566789999999999633 36899999999999999865
Q ss_pred CCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhh
Q 003365 414 QNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPK 493 (826)
Q Consensus 414 ~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsK 493 (826)
.|.-.+.. .|+|+.+..||..+.. ++....+..|.+|+.+.++++......|.+++
T Consensus 225 ~~~~~i~~-~g~I~~Lv~lL~~~~~-----------------------~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~ 280 (780)
T 2z6g_A 225 EGLLAIFK-SGGIPALVNMLGSPVD-----------------------SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQK 280 (780)
T ss_dssp HHHHHHHH-TTHHHHHHHHTTCSCH-----------------------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHH
T ss_pred hhHHHHHH-cCCHHHHHHHHcCCCH-----------------------HHHHHHHHHHHHHhCCChhhHHHHHHcCCHHH
Confidence 55333444 5999999999976421 45677899999999987777766555699999
Q ss_pred hhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHH
Q 003365 494 IIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDI 573 (826)
Q Consensus 494 II~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~I 573 (826)
++.+.... + ..+...++.+|+.|+... ..-|.+|.+. ..+..|..+|+++ .....+..|..+
T Consensus 281 Lv~lL~~~-------~-----~~v~~~a~~aL~~La~~~----~e~~~~i~~~-~~i~~Lv~lL~~~-~~~~~~~~a~~a 342 (780)
T 2z6g_A 281 MVALLNKT-------N-----VKFLAITTDCLQILAYGN----QESKLIILAS-GGPQALVNIMRTY-TYEKLLWTTSRV 342 (780)
T ss_dssp HHHGGGCC-------C-----HHHHHHHHHHHHHHHTTC----HHHHHHHHTT-THHHHHHHHHTTC-CCHHHHHHHHHH
T ss_pred HHHHHhcC-------C-----HHHHHHHHHHHHHHhcCC----hHHHHHHHHc-CCHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 99876321 1 123445666677776521 2344555554 5677777888765 335566677777
Q ss_pred HHhccCCccccccccch--------------------------------------hhHHHHHHHHHhcCCCCCchhhHHH
Q 003365 574 LTSLALEEDATERIGGT--------------------------------------GGMLKELFNILFKEGMPENQNCVRI 615 (826)
Q Consensus 574 Lt~LA~D~~~re~Ig~~--------------------------------------~~iI~~L~~iFl~~~~~~~~~~lr~ 615 (826)
|.+|+.+.+.+..+... .++|..|+..+ . +.+..++.
T Consensus 343 L~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL-~----~~d~~vr~ 417 (780)
T 2z6g_A 343 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL-G----SDDINVVT 417 (780)
T ss_dssp HHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT-T----CSCHHHHH
T ss_pred HHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHH-c----CCCHHHHH
Confidence 77777766555544322 12233333321 1 12335778
Q ss_pred HHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc----chhHHHHHHHHHHHhhhccc-chh-hhhhhHHhHHHHHHHH
Q 003365 616 AAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV----PLVRVNAARILRNLCASSGA-DCF-NQLRGVTAAAPTILKA 689 (826)
Q Consensus 616 ~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d----~~~r~~AA~IL~nLC~~s~~-e~~-~~Lk~l~~alp~VL~~ 689 (826)
.|..+|..|+..+..|+..+.+...++.|+.+|.+ +..+..|+..|.|||....+ +.. ..+. -...+|.+++.
T Consensus 418 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~-~~~~l~~L~~l 496 (780)
T 2z6g_A 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVR-LHYGLPVVVKL 496 (780)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHH-HTTCHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHH-HcCCHHHHHHH
Confidence 89999999998888899999888889999998865 27899999999999874332 211 1111 13346665555
Q ss_pred Hhchhh-hHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHh
Q 003365 690 ITSEDY-KLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILR 740 (826)
Q Consensus 690 I~~~e~-k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~ 740 (826)
+..... +..+...+....|+. .++.- ..+.+.| ++..|++.|.
T Consensus 497 L~~~~~~~v~~~A~~aL~nLa~--~~~~~-~~i~~~g-----~i~~Lv~lL~ 540 (780)
T 2z6g_A 497 LHPPSHWPLIKATVGLIRNLAL--CPANH-APLREQG-----AIPRLVQLLV 540 (780)
T ss_dssp TSTTCCHHHHHHHHHHHHHHHS--SHHHH-HHHHHTT-----HHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHHHhc--CHHHH-HHHHHCC-----CHHHHHHHHH
Confidence 544443 667777777777764 23333 3333333 4555666654
No 19
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.12 E-value=4.1e-10 Score=127.90 Aligned_cols=271 Identities=15% Similarity=0.202 Sum_probs=194.1
Q ss_pred hhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhC-----CCC---cccHHHHHHHHHHHHHHhccCC-CceEEecc
Q 003365 352 IGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLN-----WKD---PQEEEIRRSAAEILSKLAGKKQ-NSLRVAGI 422 (826)
Q Consensus 352 ~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~-----wts---~~d~eiR~~AArIva~LA~~~~-nsLrv~~i 422 (826)
.-++.|..+-..++.|...+ ..+.++.|++.|. |+. ..+.+++..||+++.+|+.++. +.-.|...
T Consensus 167 qAv~aL~nls~~~e~R~~i~-----~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~ 241 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMN-----ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 241 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHH-----HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHhcCCHHHHHHHH-----HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHc
Confidence 45666766654444333322 2367777887773 433 2346899999999999997543 22223345
Q ss_pred cchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhh--ccccccccccccCchhhhhccccc
Q 003365 423 PGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLAR--NHDNCGKIGNTRGLLPKIIDFTHA 500 (826)
Q Consensus 423 PGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~--D~~NC~~I~~t~gLIsKII~ft~~ 500 (826)
.|+|..+..||..++. +........|.+|+. |++|...|.++ |.|+.+|.+...
T Consensus 242 ~GaIp~LV~LL~s~~~-----------------------~v~~~A~~aL~nLs~~~~~~~k~~I~~~-GaI~~LV~lLl~ 297 (458)
T 3nmz_A 242 KGCMRALVAQLKSESE-----------------------DLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALE 297 (458)
T ss_dssp HHHHHHHHHGGGCSCH-----------------------HHHHHHHHHHHHHTSSCCHHHHHHHHHT-THHHHHHHHHTT
T ss_pred CCcHHHHHHHHhCCCH-----------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHc-CCHHHHHHHHhc
Confidence 6789999999985421 345567788999997 34565667755 889999975311
Q ss_pred chhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCC--hHHHHHHHHHHHhcc
Q 003365 501 EESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKH--PLLQKLGIDILTSLA 578 (826)
Q Consensus 501 ~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~--~eLq~lAi~ILt~LA 578 (826)
.. ...+.+.++.+|..|++-. ...|.+|.....++..|.+.|.++... .++++.|+.+|+||+
T Consensus 298 ------s~-----~~~v~~~A~~aL~nLs~~~----~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs 362 (458)
T 3nmz_A 298 ------VK-----KESTLKSVLSALWNLSAHC----TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362 (458)
T ss_dssp ------CC-----SHHHHHHHHHHHHHHHHHC----HHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHH
T ss_pred ------CC-----CHHHHHHHHHHHHHHccCC----HHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHH
Confidence 11 1244578889999998721 233678886778999999999876433 268999999999998
Q ss_pred C----CccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--ch
Q 003365 579 L----EEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PL 652 (826)
Q Consensus 579 ~----D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~ 652 (826)
. +++.++.|...+ .|..|+. ++.++ ...++..|..||..|+..++.|+..|.+++.++.|+.+|.+ ++
T Consensus 363 ~~~a~~~~~~~~i~~~G-~i~~Lv~-LL~~~----~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~ 436 (458)
T 3nmz_A 363 SLIATNEDHRQILRENN-CLQTLLQ-HLKSH----SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM 436 (458)
T ss_dssp HHHTTCHHHHHHHHHTT-HHHHHHH-HSSCS----CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHH
T ss_pred hcccCCHHHHHHHHHcc-cHHHHHH-HHcCC----ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence 4 777777665544 4678888 44432 23478899999999998899999999988999999999975 57
Q ss_pred hHHHHHHHHHHHhhhcccch
Q 003365 653 VRVNAARILRNLCASSGADC 672 (826)
Q Consensus 653 ~r~~AA~IL~nLC~~s~~e~ 672 (826)
.+..||..|+||+.+...+|
T Consensus 437 v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 437 IAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HHHHHHHHHHHHHTCCSCC-
T ss_pred HHHHHHHHHHHHHcCCHhhh
Confidence 78999999999999876565
No 20
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.11 E-value=2.6e-09 Score=121.74 Aligned_cols=349 Identities=14% Similarity=0.172 Sum_probs=229.0
Q ss_pred hhHHHHHhhc-CCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc
Q 003365 334 MVIFGMELLD-SNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGK 412 (826)
Q Consensus 334 LVtFA~dll~-S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~ 412 (826)
.|..=+++|. ++.++-|...++.|.++....+-..+. ....+.|..|+++|.- .+.++|+.|++.+.+||++
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~----vv~~GaIp~Lv~lL~s---~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA----VVDGGAIPAFISLLAS---PHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH----HHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH----HHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHhC
Confidence 3444567775 455677999999999998533211122 2234689999999964 3478999999999999986
Q ss_pred CCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchh
Q 003365 413 KQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLP 492 (826)
Q Consensus 413 ~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIs 492 (826)
....-....-.|++..+..||...+... ....+.......|.+++.+.++...+....++++
T Consensus 174 ~~~~r~~v~~~G~i~~Ll~lL~~~~~~~------------------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp 235 (510)
T 3ul1_B 174 GSAFRDLVIKHGAIDPLLALLAVPDLST------------------LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 235 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTCSSCGGG------------------SCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHcCChHHHHHHHHhccchh------------------hhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHH
Confidence 3221112222588999999987643210 0012233455678888888888888877778888
Q ss_pred hhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHH
Q 003365 493 KIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGID 572 (826)
Q Consensus 493 KII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ 572 (826)
.++.+... . ..++...+...|..|+..+.+ ..+.|. ...++..|.+.|++.. +..+..|+.
T Consensus 236 ~L~~LL~~-------~-----~~~v~~~A~~aL~~L~~~~~~----~~~~i~-~~g~i~~Lv~lL~~~~--~~v~~~al~ 296 (510)
T 3ul1_B 236 TLVRLLHH-------N-----DPEVLADSCWAISYLTDGPNE----RIEMVV-KKGVVPQLVKLLGATE--LPIVTPALR 296 (510)
T ss_dssp HHHHHTTC-------S-----CHHHHHHHHHHHHHHTSSCHH----HHHHHH-TTTCHHHHHHHHTCSC--HHHHHHHHH
T ss_pred HHHHHHhc-------C-----CHHHHHHHHHHHHHHhhchhh----hHHHHH-hcccchhhhhhhcCCC--hhhhhHHHH
Confidence 88865422 1 124567788899999865432 222333 3467888899988754 889999999
Q ss_pred HHHhccCCc-cccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc-
Q 003365 573 ILTSLALEE-DATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV- 650 (826)
Q Consensus 573 ILt~LA~D~-~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d- 650 (826)
+|.+++... +.++.+... +++..|+. ++.+ .+..++..|..+|..|+..++.+...+...+++..|+.+|.+
T Consensus 297 aL~nl~~~~~~~~~~i~~~-g~l~~L~~-LL~~----~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~ 370 (510)
T 3ul1_B 297 AIGNIVTGTDEQTQKVIDA-GALAVFPS-LLTN----PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 370 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHT-TGGGGCC--CTTC----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHhhcCCHHHHHHHhhc-cchHHHHH-HhcC----CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC
Confidence 999997543 333333222 22233333 2332 345688999999999999998888888888999999999986
Q ss_pred -chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcC----CchhhHHHHHhcC
Q 003365 651 -PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFM----TREESSNIFERAG 725 (826)
Q Consensus 651 -~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i----~~edfa~~l~~~~ 725 (826)
.+.+..||..|.|||.+..++....|.+ ...+|..+.-.-+.+.+..++.++--..|+++. ..+.+...++..|
T Consensus 371 ~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~-~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~g 449 (510)
T 3ul1_B 371 DFKTQKEAAWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECG 449 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcC
Confidence 5778899999999998766554322211 234444444444556677777777666677532 2345677777655
Q ss_pred CChHHHHHHHHHH
Q 003365 726 IMEIDLANTLVQI 738 (826)
Q Consensus 726 i~~~~fv~kLv~i 738 (826)
.++||.+.
T Consensus 450 -----gl~~ie~L 457 (510)
T 3ul1_B 450 -----GLDKIEAL 457 (510)
T ss_dssp -----HHHHHHHG
T ss_pred -----cHHHHHHH
Confidence 34555543
No 21
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.11 E-value=2.2e-09 Score=129.37 Aligned_cols=279 Identities=17% Similarity=0.203 Sum_probs=203.6
Q ss_pred HHhhcCCCcchhhhhhHHHHHHhhCcCCc-------------------------hHHH----HHhccCHHHHHHHHHHhC
Q 003365 339 MELLDSNSPDEQLIGARILRQFAMSKRFS-------------------------DDTL----QKIGINLSVIERFVEMLN 389 (826)
Q Consensus 339 ~dll~S~S~~~qL~GvriL~~~l~~~~~~-------------------------~~~L----~kl~tS~~~i~rLi~ML~ 389 (826)
+++|+|+.+.-|...+++|.++....+.. .+.. +.+. ..+.+..|+++|.
T Consensus 427 V~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vv-eaGaVp~LV~LL~ 505 (810)
T 3now_A 427 MDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA-NEGITTALCALAK 505 (810)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHH-HTTHHHHHHHHHT
T ss_pred HHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHH-HCcCHHHHHHHHc
Confidence 56677777777777889999988732100 0111 1222 3368999999998
Q ss_pred CCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHH
Q 003365 390 WKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLL 469 (826)
Q Consensus 390 wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~ 469 (826)
..+ .++|+.||+++.+||++..+.-.|++ -|++..+-.||..+.. ........
T Consensus 506 s~s---~~vqe~Aa~aL~NLA~d~~~r~~Vv~-~Gaip~Lv~LL~s~~~-----------------------~~k~~Aa~ 558 (810)
T 3now_A 506 TES---HNSQELIARVLNAVCGLKELRGKVVQ-EGGVKALLRMALEGTE-----------------------KGKRHATQ 558 (810)
T ss_dssp CCC---HHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHHHSSCH-----------------------HHHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHccCCH-----------------------HHHHHHHH
Confidence 654 68999999999999997555444555 5899999999875421 22445677
Q ss_pred HHHHHhhcccccccccc--ccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcc
Q 003365 470 ILKKLARNHDNCGKIGN--TRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVV 547 (826)
Q Consensus 470 IL~kLA~D~~NC~~I~~--t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~ 547 (826)
.|.+|+.+.++...+.. ..|.|+.++.+.+... .......++..|..|++.+ ...|+.|-+.
T Consensus 559 AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~-----------~~l~~~eAl~AL~NLa~~~----d~~~~~Ii~a- 622 (810)
T 3now_A 559 ALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDC-----------TALENFESLMALTNLASMN----ESVRQRIIKE- 622 (810)
T ss_dssp HHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTS-----------CHHHHHHHHHHHHHHTTSC----HHHHHHHHHT-
T ss_pred HHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCC-----------cHHHHHHHHHHHHHHhcCC----HHHHHHHHHc-
Confidence 88999875554433322 2467888887663211 1112246899999999874 3566778775
Q ss_pred hhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcc
Q 003365 548 FTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALD 627 (826)
Q Consensus 548 f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~e 627 (826)
..+..|.+.|.++ ++..|+.|++.|.||+.+++.+..+....+.++.|+. ++..+ +..++..|+.||++|+..
T Consensus 623 G~l~~Lv~LL~s~--~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~-LL~s~----d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 623 QGVSKIEYYLMED--HLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLAL-LCEDE----DEETATACAGALAIITSV 695 (810)
T ss_dssp THHHHHHHHHHSC--CTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHH-GGGCS----SHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHH-HhcCC----CHHHHHHHHHHHHHHhCC
Confidence 6789999999875 3789999999999999988877665532356677777 55542 346888999999999998
Q ss_pred CcchHHHHHh-hhhHHHHHHhhcc--chhHHHHHHHHHHHhhhc
Q 003365 628 SKSNCHRILK-LKVVDKLVETLAV--PLVRVNAARILRNLCASS 668 (826)
Q Consensus 628 s~~Nc~~ILk-e~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s 668 (826)
++.+|..|+. ++.++.|+.+|.+ ++.+..|+..|.||+.++
T Consensus 696 s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 696 SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999 6899999999975 578889999999998743
No 22
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.09 E-value=4.1e-09 Score=118.74 Aligned_cols=354 Identities=12% Similarity=0.113 Sum_probs=234.7
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCce-EEecccchhHHhhhccccCCCCCCCcccchhhhhhcccccc
Q 003365 380 VIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSL-RVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANY 458 (826)
Q Consensus 380 ~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsL-rv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~ 458 (826)
+++.|+++|... |.+++..||..+.+|+.+..+.- .|.. .|+++.+..||..++.
T Consensus 3 ~l~~lv~~L~s~---~~~~q~~A~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~s~~~-------------------- 58 (457)
T 1xm9_A 3 TIPKAVQYLSSQ---DEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLRSPNQ-------------------- 58 (457)
T ss_dssp CHHHHHHHHHSS---CTHHHHHHHHHHHHHTSSCSSHHHHHHH-TTHHHHHHHHTTSSCH--------------------
T ss_pred CHHHHHHHHCCC---CHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCHHHHHHHHcCCCH--------------------
Confidence 578899999865 35899999999999996543322 3333 7999999999985321
Q ss_pred CcchhhhhHHHHHHHHhhc-cccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhh
Q 003365 459 GFWTFNHLGLLILKKLARN-HDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGE 537 (826)
Q Consensus 459 ~~~~L~~~GL~IL~kLA~D-~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~ 537 (826)
++...+...|.+|+.+ ++|...|.+. |.|+.++.+...+. -..+.+.+...|..|++. .
T Consensus 59 ---~~~~~A~~aL~nLa~~~~~~k~~i~~~-G~i~~Lv~lL~~~~-----------~~~~~~~a~~aL~nLa~~-----~ 118 (457)
T 1xm9_A 59 ---NVQQAAAGALRNLVFRSTTNKLETRRQ-NGIREAVSLLRRTG-----------NAEIQKQLTGLLWNLSST-----D 118 (457)
T ss_dssp ---HHHHHHHHHHHHHHSSCHHHHHHHHHT-TCHHHHHHHHTTCC-----------CHHHHHHHHHHHHHHHTS-----S
T ss_pred ---HHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHhhCC-----------CHHHHHHHHHHHHHHhcC-----H
Confidence 3456788899999985 8898889877 99999998774211 123446778888999876 2
Q ss_pred HHHHHHhhcchhhhhHHHHHc--------cCC------CChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhc
Q 003365 538 HLRREISEVVFTISNIRDILL--------HGE------KHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFK 603 (826)
Q Consensus 538 ~LR~eIS~~~f~lsNL~~IL~--------~~~------~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~ 603 (826)
..|..|.+ .++..|..+|. .+. .++++++.|+++|.||+.+++.|+.+...++.|..|+...-+
T Consensus 119 ~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 119 ELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp STHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34566766 78889999983 111 356778899999999999988888887765677888875432
Q ss_pred CC--CCCchhhHHHHHHHHHHHHhccC-----------------------cchH--------------------------
Q 003365 604 EG--MPENQNCVRIAAGEALAMLALDS-----------------------KSNC-------------------------- 632 (826)
Q Consensus 604 ~~--~~~~~~~lr~~AGeALamLa~es-----------------------~~Nc-------------------------- 632 (826)
.. ... ++.....|..+|..|+... ...|
T Consensus 197 ~~~~~~~-~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (457)
T 1xm9_A 197 CVAASRC-DDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKG 275 (457)
T ss_dssp HHHHTCT-TCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCG
T ss_pred hccccCC-chHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchH
Confidence 10 000 1112333444555554110 0001
Q ss_pred -HHHHhhhhHHHHHHhhcc---chhHHHHHHHHHHHhhhcccchhhhh-h-hH--HhHHHHHHHHHhchhhhHHHHHHHh
Q 003365 633 -HRILKLKVVDKLVETLAV---PLVRVNAARILRNLCASSGADCFNQL-R-GV--TAAAPTILKAITSEDYKLQEVMIGL 704 (826)
Q Consensus 633 -~~ILke~vi~~Lv~mL~d---~~~r~~AA~IL~nLC~~s~~e~~~~L-k-~l--~~alp~VL~~I~~~e~k~LE~ligL 704 (826)
..++..++++.|+.+|.+ +..+..||..|.|||....+ +.... + .+ ...+|.+.+-..+.+.+.+....++
T Consensus 276 ~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~-~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~a 354 (457)
T 1xm9_A 276 SGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL-MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASL 354 (457)
T ss_dssp GGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS-HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc-chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHH
Confidence 112233678888888864 57788999999999985433 11111 1 13 3567876666666666666666777
Q ss_pred HHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCccHHHHHhhcHHHHHH
Q 003365 705 AAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKATNVHIFKNLGLEMVLE 784 (826)
Q Consensus 705 a~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~~y~~~f~e~~m~eaL~ 784 (826)
-..+++ .++....++. ..+..|++.|.....+...-+.+...++..+--+...++.++..+.++|..+.|.
T Consensus 355 L~nls~---~~~~~~~i~~------~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~ 425 (457)
T 1xm9_A 355 LSNMSR---HPLLHRVMGN------QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII 425 (457)
T ss_dssp HHHHHT---SGGGHHHHHH------HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHH
T ss_pred HHHHhc---CHHHHHHHHH------hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH
Confidence 777765 2345555553 2456778877743322222345666777766667788899999999999888888
Q ss_pred HHHHHh
Q 003365 785 SVIETT 790 (826)
Q Consensus 785 ~v~~T~ 790 (826)
....+.
T Consensus 426 ~L~~~~ 431 (457)
T 1xm9_A 426 NLCRSS 431 (457)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 877655
No 23
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.08 E-value=5.3e-09 Score=124.64 Aligned_cols=266 Identities=14% Similarity=0.152 Sum_probs=196.8
Q ss_pred HhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhh
Q 003365 373 KIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKII 452 (826)
Q Consensus 373 kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~ 452 (826)
+.....++|..|++++...+ ..+|+.|++++..|+.++++.-.+++ -|++..+-.+|..+....
T Consensus 451 ~~l~eaGvIp~Lv~Ll~S~s---~~~re~A~~aL~nLS~d~~~R~~lvq-qGal~~LL~lL~s~~~~~------------ 514 (778)
T 3opb_A 451 KYILRTELISFLKREMHNLS---PNCKQQVVRIIYNITRSKNFIPQLAQ-QGAVKIILEYLANKQDIG------------ 514 (778)
T ss_dssp HHTTTTTHHHHHHHHGGGSC---HHHHHHHHHHHHHHHTSGGGHHHHHH-TTHHHHHHHHTTCC---C------------
T ss_pred HHHHHCcCHHHHHHHHcCCC---HHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCCcc------------
Confidence 34455578999999997644 68999999999999999877777777 599999999988764210
Q ss_pred ccccccCcchhhhhHHHHHHHHhhccccccccc--cccCchhhhhcccccchh----hhcccCCC-hhHHHHHHHHHHHH
Q 003365 453 LDHANYGFWTFNHLGLLILKKLARNHDNCGKIG--NTRGLLPKIIDFTHAEES----LLRNEHDT-SSQILTVRRSLQLV 525 (826)
Q Consensus 453 ~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~--~t~gLIsKII~ft~~~~~----ll~~~~~~-~~~~~iv~~SLkvL 525 (826)
..........|.+|+...|+...++ +..|.|+.++.+.+.++. .+++.+.. .-| ...||..|
T Consensus 515 --------~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~---~feAL~AL 583 (778)
T 3opb_A 515 --------EPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTD---NYEALLAL 583 (778)
T ss_dssp --------CHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHH---HHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHH---HHHHHHHH
Confidence 0235678889999986554444443 234888888887752111 01111100 012 36899999
Q ss_pred HHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCcccc-ccccch--hh---HHHHHHH
Q 003365 526 KMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDAT-ERIGGT--GG---MLKELFN 599 (826)
Q Consensus 526 ~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~r-e~Ig~~--~~---iI~~L~~ 599 (826)
.+||+.++..|..+|++|.++..++.-|.+.|.++ +..+|+-|.+.+.||+.+++.+ +++... +. =++.|+.
T Consensus 584 TNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~--n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~ 661 (778)
T 3opb_A 584 TNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE--NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVK 661 (778)
T ss_dssp HHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHH
T ss_pred HHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC--CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHH
Confidence 99999998889999999999877899999988764 5789999999999999988865 344321 11 1466666
Q ss_pred HHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhh-hhHHHHHHhhcc----chhHHHHHHHHHHHhhhcccch
Q 003365 600 ILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKL-KVVDKLVETLAV----PLVRVNAARILRNLCASSGADC 672 (826)
Q Consensus 600 iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke-~vi~~Lv~mL~d----~~~r~~AA~IL~nLC~~s~~e~ 672 (826)
+++. ++...|..|+-|||||++.++.+|..|++. +.++.|+.++.+ ++.+..++.+|.||..|+.++.
T Consensus 662 -Ll~s----~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~ 734 (778)
T 3opb_A 662 -LLQL----SDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNG 734 (778)
T ss_dssp -GGGC----SCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTT
T ss_pred -HHcC----CCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCC
Confidence 6654 344688899999999999999999999998 788888888765 5788899999999998765443
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.07 E-value=1.7e-08 Score=110.42 Aligned_cols=320 Identities=14% Similarity=0.152 Sum_probs=211.3
Q ss_pred chhHHHHHhhcCC-CcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 003365 333 DMVIFGMELLDSN-SPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAG 411 (826)
Q Consensus 333 ~LVtFA~dll~S~-S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~ 411 (826)
+++..-+++|.++ +++-+...+++|..+.....-.. +.+. ..+.+..|+++|.-. +.++|..|+.++.+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~-~~~~i~~L~~lL~~~---~~~vr~~a~~~L~~l~~ 136 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT---RIVI-QAGAVPIFIELLSSE---FEDVQEQAVWALGNIAG 136 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH---HHHH-HTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH---HHHH-hCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHcc
Confidence 4566667788877 77889999999999987432111 1121 246899999999743 57999999999999997
Q ss_pred cCCCceEE-ecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhcc--cccccccccc
Q 003365 412 KKQNSLRV-AGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNH--DNCGKIGNTR 488 (826)
Q Consensus 412 ~~~nsLrv-~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~--~NC~~I~~t~ 488 (826)
+... .+- .--.|+++.+..+|..+. .+++....+..|.+|+.+. .+...+. .
T Consensus 137 ~~~~-~~~~~~~~~~i~~L~~~l~~~~----------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~ 191 (450)
T 2jdq_A 137 DSTM-CRDYVLDCNILPPLLQLFSKQN----------------------RLTMTRNAVWALSNLCRGKSPPPEFAKV--S 191 (450)
T ss_dssp TCHH-HHHHHHHTTCHHHHHHHTTSCC----------------------CHHHHHHHHHHHHHHHCCSSSCCCGGGT--G
T ss_pred CCHH-HHHHHHHCCCHHHHHHHhcCCC----------------------CHHHHHHHHHHHHHHhCCCCCCCCHHHH--H
Confidence 5210 110 111578888888887421 1245667888999999754 3333332 6
Q ss_pred CchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHH
Q 003365 489 GLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQK 568 (826)
Q Consensus 489 gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~ 568 (826)
++++.++.+... . + ..+...++..|..|+....+ .++.+.+ ..++..|...|.+. +++.+.
T Consensus 192 ~~l~~L~~~l~~-------~---~--~~v~~~a~~~L~~l~~~~~~----~~~~~~~-~~~i~~L~~ll~~~--~~~v~~ 252 (450)
T 2jdq_A 192 PCLNVLSWLLFV-------S---D--TDVLADACWALSYLSDGPND----KIQAVID-AGVCRRLVELLMHN--DYKVVS 252 (450)
T ss_dssp GGHHHHHHHTTC-------C---C--HHHHHHHHHHHHHHTSSSHH----HHHHHHH-TTTHHHHHHHTTCS--CHHHHH
T ss_pred HHHHHHHHHHcc-------C---C--HHHHHHHHHHHHHHHCCCcH----HHHHHHH-cCcHHHHHHHHCCC--chhHHH
Confidence 888888876531 1 1 24567788899999865322 2233333 35778888888754 489999
Q ss_pred HHHHHHHhccCCccc-cccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHh
Q 003365 569 LGIDILTSLALEEDA-TERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVET 647 (826)
Q Consensus 569 lAi~ILt~LA~D~~~-re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~m 647 (826)
.|+.+|.+|+.+.+. ++.+-. .+++..|+.. +.. .+..++..|..+|..|+..+..++..++..++++.|+.+
T Consensus 253 ~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~l-l~~----~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 326 (450)
T 2jdq_A 253 PALRAVGNIVTGDDIQTQVILN-CSALQSLLHL-LSS----PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISI 326 (450)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHH-TTC----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHhhCChHHHHHHHH-CccHHHHHHH-HcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 999999999875442 222222 2567778774 443 234588899999999998888888888777889999998
Q ss_pred hcc--chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhh
Q 003365 648 LAV--PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFR 710 (826)
Q Consensus 648 L~d--~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~ 710 (826)
|.+ ++.|..|+..|.|||.+..++....+- =...+|.+++..-+.+.+..+..+.--..+++
T Consensus 327 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 327 LQTAEFRTRKEAAWAITNATSGGSAEQIKYLV-ELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 876 578889999999999864443322111 12355555554444444444444443334443
No 25
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.07 E-value=1.5e-08 Score=115.71 Aligned_cols=340 Identities=15% Similarity=0.186 Sum_probs=226.8
Q ss_pred hhHHHHHhhc-CCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc
Q 003365 334 MVIFGMELLD-SNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGK 412 (826)
Q Consensus 334 LVtFA~dll~-S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~ 412 (826)
.|.-=+++|. ++.++-|...+++|..+........+.+ -..+.|..|+++|... +.++|+.|++.+.+||++
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v----v~~Gaip~Lv~LL~s~---~~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV----VDGGAIPAFISLLASP---HAHISEQAVWALGNIAGA 192 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH----HHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH----HHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhcc
Confidence 4444567775 5567889999999999986543222222 2346889999998754 368999999999999985
Q ss_pred CCC-ceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCch
Q 003365 413 KQN-SLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLL 491 (826)
Q Consensus 413 ~~n-sLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLI 491 (826)
... .-.|.. -|++..+..||....... ....+.......|.+|+.+.++...+....+++
T Consensus 193 ~~~~r~~i~~-~g~i~~Ll~lL~~~~~~~------------------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l 253 (529)
T 3tpo_A 193 GSAFRDLVIK-HGAIDPLLALLAVPDLST------------------LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 253 (529)
T ss_dssp CHHHHHHHHH-TTCHHHHHHTTCSSCGGG------------------SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHH
T ss_pred CHHHHHHHHH-cCCcHHHHHHHhccchhH------------------hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHH
Confidence 211 111222 488888888887643210 001223345567888888888888887777888
Q ss_pred hhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHH
Q 003365 492 PKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGI 571 (826)
Q Consensus 492 sKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi 571 (826)
|.++.+... . ..++...++..|..|+..+.+ ..+.|.+ ..++..|.+.|.+. ++..+..|+
T Consensus 254 p~L~~LL~~-------~-----~~~v~~~a~~aL~~l~~~~~~----~~~~v~~-~g~i~~Lv~lL~~~--~~~v~~~a~ 314 (529)
T 3tpo_A 254 PTLVRLLHH-------N-----DPEVLADSCWAISYLTDGPNE----RIEMVVK-KGVVPQLVKLLGAT--ELPIVTPAL 314 (529)
T ss_dssp HHHHHHTTS-------S-----CHHHHHHHHHHHHHHHSSCHH----HHHHHHT-TTCHHHHHHHHTCS--CHHHHHHHH
T ss_pred HHHHHHhcC-------C-----cHHHHHHHHHHHHHhhhhhhh----hHHHHHh-ccchHHHHHHhcCC--ChhHHHHHH
Confidence 888865422 1 124556778888898876433 2233333 46788888888865 488999999
Q ss_pred HHHHhccCC-ccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc
Q 003365 572 DILTSLALE-EDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV 650 (826)
Q Consensus 572 ~ILt~LA~D-~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d 650 (826)
.+|.+++.. ++.++.+... +.+..|+. ++.+ .+..++..|..+|..|+..++.++..+...+++..|+.+|.+
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~-g~l~~L~~-LL~~----~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~ 388 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDA-GALAVFPS-LLTN----PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 388 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHT-TGGGGHHH-HTTC----SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHccchHHHHHHhhc-ccHHHHHH-HHcC----CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC
Confidence 999999764 3333333332 33455666 3333 234588899999999999999888888887999999999986
Q ss_pred --chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcC----CchhhHHHHHhc
Q 003365 651 --PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFM----TREESSNIFERA 724 (826)
Q Consensus 651 --~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i----~~edfa~~l~~~ 724 (826)
++.+..||..|.|||.+..++....|-+ ...+|...+-.-..+.+...+.++--..|+++. ..+.++..++..
T Consensus 389 ~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~-~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ 467 (529)
T 3tpo_A 389 ADFKTQKAAAWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC 467 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHH-CcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHC
Confidence 4678899999999998766554322211 223444444334456667777666666676532 234567777776
Q ss_pred C
Q 003365 725 G 725 (826)
Q Consensus 725 ~ 725 (826)
|
T Consensus 468 g 468 (529)
T 3tpo_A 468 G 468 (529)
T ss_dssp T
T ss_pred C
Confidence 5
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.04 E-value=1.9e-08 Score=113.74 Aligned_cols=361 Identities=15% Similarity=0.181 Sum_probs=237.6
Q ss_pred chhHHHHHhhcCCC-cchhhhhhHHHHHHhhCcC-CchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh
Q 003365 333 DMVIFGMELLDSNS-PDEQLIGARILRQFAMSKR-FSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLA 410 (826)
Q Consensus 333 ~LVtFA~dll~S~S-~~~qL~GvriL~~~l~~~~-~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA 410 (826)
+.+..=+++|.+++ ++-+...++.|..+....+ .+.. + ...+.+..|++.|.- .+.++|..|+..+.+|+
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~----~-~~~g~i~~L~~lL~~---~~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV----V-IDHGAVPIFVKLLGS---SSDDVREQAVWALGNVA 188 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH----H-HHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH----H-HhCCcHHHHHHHhcC---CCHHHHHHHHHHHHHHh
Confidence 34566677887765 7888999999999987432 1111 1 123789999999975 35799999999999999
Q ss_pred ccCCCc-eEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccC
Q 003365 411 GKKQNS-LRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRG 489 (826)
Q Consensus 411 ~~~~ns-Lrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~g 489 (826)
.+.... -.+.. .|+++.+..+|..+. .+.+.......|.+|+.+..+..... ..|
T Consensus 189 ~~~~~~~~~i~~-~g~l~~Ll~lL~~~~----------------------~~~v~~~a~~~L~~L~~~~~~~~~~~-~~~ 244 (528)
T 4b8j_A 189 GDSPKCRDLVLA-NGALLPLLAQLNEHT----------------------KLSMLRNATWTLSNFCRGKPQPSFEQ-TRP 244 (528)
T ss_dssp HTCHHHHHHHHH-TTCHHHHHHTCCTTC----------------------CHHHHHHHHHHHHHHHCSSSCCCHHH-HTT
T ss_pred CCChhhHHHHHH-CCcHHHHHHHHhcCC----------------------CHHHHHHHHHHHHHHHcCCCCCcHHH-HHH
Confidence 752111 11111 478888888884321 12445667788999998654444332 358
Q ss_pred chhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHH
Q 003365 490 LLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKL 569 (826)
Q Consensus 490 LIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~l 569 (826)
+++.++.+... . ...+...++..|..|+....+ ..+.+.+ ..++..|..+|.+.. +..+..
T Consensus 245 ~l~~L~~lL~~-------~-----~~~v~~~a~~aL~~l~~~~~~----~~~~~~~-~g~v~~Lv~lL~~~~--~~v~~~ 305 (528)
T 4b8j_A 245 ALPALARLIHS-------N-----DEEVLTDACWALSYLSDGTND----KIQAVIE-AGVCPRLVELLLHPS--PSVLIP 305 (528)
T ss_dssp HHHHHHHHTTC-------C-----CHHHHHHHHHHHHHHTSSCHH----HHHHHHH-TTCHHHHHHHTTCSC--HHHHHH
T ss_pred HHHHHHHHHCC-------C-----CHHHHHHHHHHHHHHHcCCHH----HHHHHHH-cCHHHHHHHHHcCCC--hhHHHH
Confidence 88888876522 1 134567889999999865322 1223333 368888999988764 899999
Q ss_pred HHHHHHhccCCc-cccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhh
Q 003365 570 GIDILTSLALEE-DATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETL 648 (826)
Q Consensus 570 Ai~ILt~LA~D~-~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL 648 (826)
|+.+|.+|+... +..+.+.. .+++..|+..+-+. ....++..|..+|..|+..++..+..++..+++..|+.+|
T Consensus 306 a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~----~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL 380 (528)
T 4b8j_A 306 ALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQN----LKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLL 380 (528)
T ss_dssp HHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCC----CcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
Confidence 999999998743 33333333 45667788755432 1346888999999999988877788887778899999998
Q ss_pred cc--chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCC---------chhh
Q 003365 649 AV--PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMT---------REES 717 (826)
Q Consensus 649 ~d--~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~---------~edf 717 (826)
.+ ++.+..|+..|.|||.+..++....+-+ ...+|.++.-+.+.+.+..+..+..-.+|++.-. .+.+
T Consensus 381 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~ 459 (528)
T 4b8j_A 381 QTAEFDIKKEAAWAISNATSGGSHDQIKYLVS-EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVF 459 (528)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHH
Confidence 75 5788899999999998754443222211 2345555555555566777777777777776431 1135
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Q 003365 718 SNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAI 761 (826)
Q Consensus 718 a~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I 761 (826)
...++..| .+++|.+..+ +. -+.|++.+.+++-
T Consensus 460 ~~~i~~~~-----~~~~l~~L~~-~~-----~~~v~~~a~~il~ 492 (528)
T 4b8j_A 460 SQMIDEAE-----GLEKIENLQS-HD-----NNEIYEKAVKILE 492 (528)
T ss_dssp HHHHHHTT-----HHHHHHHGGG-CS-----SHHHHHHHHHHHH
T ss_pred HHHHHHCC-----cHHHHHHHHc-CC-----CHHHHHHHHHHHH
Confidence 66666554 3455665433 22 3456666555443
No 27
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.02 E-value=6.2e-09 Score=105.60 Aligned_cols=235 Identities=16% Similarity=0.204 Sum_probs=164.0
Q ss_pred hHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCC
Q 003365 335 VIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQ 414 (826)
Q Consensus 335 VtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~ 414 (826)
..+=+++|.|++++.|..+++.|..++...+ ...+.+. ..+.++.|+++|.-.+ .++|..|++++.+|+.+
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~---~~~~~~~-~~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~-- 84 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGN---EQIQAVI-DAGALPALVQLLSSPN---EQILQEALWALSNIASG-- 84 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHH---HHHHHHH-HTTHHHHHHHGGGCSC---HHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC---chHHHHH-HcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHhcC--
Confidence 3445678899999999999999988776521 1111222 2378889999987543 68899999988888852
Q ss_pred CceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhh
Q 003365 415 NSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKI 494 (826)
Q Consensus 415 nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKI 494 (826)
+++|+..+.+. |.++.+
T Consensus 85 --------------------------------------------------------------~~~~~~~i~~~-g~i~~L 101 (252)
T 4db8_A 85 --------------------------------------------------------------GNEQIQAVIDA-GALPAL 101 (252)
T ss_dssp --------------------------------------------------------------CHHHHHHHHHT-THHHHH
T ss_pred --------------------------------------------------------------CHHHHHHHHHc-CCHHHH
Confidence 11122222222 677777
Q ss_pred hcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHH-HHHhhcchhhhhHHHHHccCCCChHHHHHHHHH
Q 003365 495 IDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLR-REISEVVFTISNIRDILLHGEKHPLLQKLGIDI 573 (826)
Q Consensus 495 I~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR-~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~I 573 (826)
+.+... . ...+...++..|..|+.... -+ ..+.+. .++..|...|+++ +++.++.|+.+
T Consensus 102 ~~lL~~-------~-----~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~~-~~i~~L~~lL~~~--~~~v~~~a~~~ 161 (252)
T 4db8_A 102 VQLLSS-------P-----NEQILQEALWALSNIASGGN-----EQIQAVIDA-GALPALVQLLSSP--NEQILQEALWA 161 (252)
T ss_dssp HHGGGC-------S-----CHHHHHHHHHHHHHHTTSCH-----HHHHHHHHT-THHHHHHHGGGCS--CHHHHHHHHHH
T ss_pred HHHHcC-------C-----CHHHHHHHHHHHHHhhcCCc-----hHHHHHHHC-CCHHHHHHHHhCC--CHHHHHHHHHH
Confidence 765532 1 12455678888888875532 22 333333 6788888888765 58999999999
Q ss_pred HHhccCCccc-cccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--
Q 003365 574 LTSLALEEDA-TERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV-- 650 (826)
Q Consensus 574 Lt~LA~D~~~-re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d-- 650 (826)
|.+|+.+.+. ++.+.. .+++..|+..+ .. .+..++..|..+|..|+..++.++..+...+.++.|+.++.+
T Consensus 162 L~~l~~~~~~~~~~~~~-~~~i~~L~~ll-~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 235 (252)
T 4db8_A 162 LSNIASGGNEQIQAVID-AGALPALVQLL-SS----PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 235 (252)
T ss_dssp HHHHTTSCHHHHHHHHH-TTCHHHHHHGG-GC----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSS
T ss_pred HHHHHcCChHHHHHHHH-CCCHHHHHHHH-CC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCC
Confidence 9999975433 333322 45668888744 33 234588899999999998888999988888899999999975
Q ss_pred chhHHHHHHHHHHHhhh
Q 003365 651 PLVRVNAARILRNLCAS 667 (826)
Q Consensus 651 ~~~r~~AA~IL~nLC~~ 667 (826)
++.+..|+..|.|||.|
T Consensus 236 ~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 236 EKIQKEAQEALEKLQSH 252 (252)
T ss_dssp SHHHHTHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 67889999999999864
No 28
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.96 E-value=2.9e-08 Score=109.07 Aligned_cols=280 Identities=15% Similarity=0.119 Sum_probs=195.8
Q ss_pred hhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHH
Q 003365 463 FNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRRE 542 (826)
Q Consensus 463 L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~e 542 (826)
...+.+..|.+|+.|++|...|.+. |.++.++.+.....+.. ..........+-..+...|+.|+.... .-|..
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~-G~l~~Lv~LL~~~~~~~-~~~~~~~~~~~q~~Aa~aL~nLa~~~~----~~k~~ 121 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNEL-GGLQAIAELLQVDCEMY-GLTNDHYSITLRRYAGMALTNLTFGDV----ANKAT 121 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHT-THHHHHHHHHHHHHHHH-TTSCCHHHHHHHHHHHHHHHHHTSSCH----HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHhcccccc-cccCCCCCHHHHHHHHHHHHHHHcCCH----HHHHH
Confidence 3568899999999998888788776 89999998774321111 111112334556678899999986532 24667
Q ss_pred HhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCC--ccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 003365 543 ISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALE--EDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEA 620 (826)
Q Consensus 543 IS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D--~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeA 620 (826)
|.....++..|.+.|+.+ +++.|+.|+..|++|+.+ ++.|+.|... +.|..|++.++... +..++..|..|
T Consensus 122 i~~~~GaIp~LV~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~-G~Ip~Lv~lL~~~~----~~~~~~~A~~a 194 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSE--SEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVK----KESTLKSVLSA 194 (354)
T ss_dssp HHHCHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHTTCCHHHHHHHHHT-THHHHHHHHHHHCC----CHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHCCC--CHHHHHHHHHHHHHHhccCCHHHHHHHHHC-CCHHHHHHHHhcCC----CHHHHHHHHHH
Confidence 766667888999998853 589999999999999984 4567777654 44588888655542 23466678899
Q ss_pred HHHHhccCcchHHHHH-hhhhHHHHHHhhccc------hhHHHHHHHHHHHhhh--cccchhhhhhhHHhHHHHHHHHHh
Q 003365 621 LAMLALDSKSNCHRIL-KLKVVDKLVETLAVP------LVRVNAARILRNLCAS--SGADCFNQLRGVTAAAPTILKAIT 691 (826)
Q Consensus 621 LamLa~es~~Nc~~IL-ke~vi~~Lv~mL~d~------~~r~~AA~IL~nLC~~--s~~e~~~~Lk~l~~alp~VL~~I~ 691 (826)
|..|+..+..|...|. .++.+..|+.+|.++ +.+..|+.+|+|||.| ..++....+.+ ..++|..++-+.
T Consensus 195 L~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~ 273 (354)
T 3nmw_A 195 LWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLK 273 (354)
T ss_dssp HHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTT
T ss_pred HHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHc
Confidence 9999988888988887 458999999999752 3678899999999986 33443322221 346777777776
Q ss_pred chhhhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCc
Q 003365 692 SEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKAT 769 (826)
Q Consensus 692 ~~e~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~~ 769 (826)
+.+.+.+|-..+.-..++.- ++ +-.+.+-+.| .+..|++.|+. .-+++|+.+....-.+...++.
T Consensus 274 ~~~~~v~~~A~~aL~nLa~~-~~-~~~~~i~~~G-----~i~~Lv~LL~s------~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 274 SHSLTIVSNACGTLWNLSAR-NP-KDQEALWDMG-----AVSMLKNLIHS------KHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp CSCHHHHHHHHHHHHHHTSS-CH-HHHHHHHHTT-----HHHHHHTTTTC------SSHHHHHHHHHHHHHHHTTCCG
T ss_pred CCChHHHHHHHHHHHHHhCC-CH-HHHHHHHHCC-----CHHHHHHHHhC------CCHHHHHHHHHHHHHHHcCCHH
Confidence 66666777777766666632 23 4445555444 45677777752 2468899988877777777654
No 29
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.96 E-value=8.5e-09 Score=120.30 Aligned_cols=316 Identities=16% Similarity=0.156 Sum_probs=210.2
Q ss_pred hHHHHHhhcCCCcchhhhhhHHHHHHhhC--cCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc
Q 003365 335 VIFGMELLDSNSPDEQLIGARILRQFAMS--KRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGK 412 (826)
Q Consensus 335 VtFA~dll~S~S~~~qL~GvriL~~~l~~--~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~ 412 (826)
|-.=+++|.|++++-|...+..|.++... ++.+.. + . ..+.|..||+.|... .+.++++.||.++..|+..
T Consensus 92 Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~-I---~-~~GaIp~LV~LL~s~--~~~~~~e~aa~aL~nLS~~ 164 (584)
T 3l6x_A 92 IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA-I---K-NCDGVPALVRLLRKA--RDMDLTEVITGTLWNLSSH 164 (584)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH-H---H-HTTHHHHHHHHHHHC--CSHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH-H---H-HcCCHHHHHHHHcCC--CCHHHHHHHHHHHHHHhCC
Confidence 34457889999999999999999999973 332222 2 2 247899999999743 2468999999999999997
Q ss_pred CCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhcc-ccccccccccCch
Q 003365 413 KQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNH-DNCGKIGNTRGLL 491 (826)
Q Consensus 413 ~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~-~NC~~I~~t~gLI 491 (826)
..|...+. .|+++.+..||-....-..... ..+.+ ..+..+-++......+|.+|+.+. +++..|.+..|++
T Consensus 165 ~~~k~~I~--~~alp~Lv~LL~~p~sg~~~~~-~~~~k----~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli 237 (584)
T 3l6x_A 165 DSIKMEIV--DHALHALTDEVIIPHSGWEREP-NEDCK----PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLV 237 (584)
T ss_dssp GGGHHHHH--HHTHHHHHHHTHHHHHCCC---------------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHH
T ss_pred chhhHHHH--hccHHHHHHHHhcccccccccc-ccccc----ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcH
Confidence 76666666 4778888887731100000000 00000 001122356677888999999855 4566788888988
Q ss_pred hhhhcccccc-------hh-------hhcc------------------------------cCCC----------------
Q 003365 492 PKIIDFTHAE-------ES-------LLRN------------------------------EHDT---------------- 511 (826)
Q Consensus 492 sKII~ft~~~-------~~-------ll~~------------------------------~~~~---------------- 511 (826)
+.++.++... .. .+++ ....
T Consensus 238 ~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL 317 (584)
T 3l6x_A 238 DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLL 317 (584)
T ss_dssp HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHH
Confidence 8888765321 00 0000 0000
Q ss_pred --hhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccc
Q 003365 512 --SSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGG 589 (826)
Q Consensus 512 --~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~ 589 (826)
.....+.+.+.-.|+.|+...+......|..|-+. ..+.-|.+.|+++. .+.++-|++.|+||+.|.+.++.|+
T Consensus 318 ~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~-~glp~Lv~LL~s~~--~~v~~~A~~aL~nLs~~~~~~~~I~- 393 (584)
T 3l6x_A 318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQE-KALSAIADLLTNEH--ERVVKAASGALRNLAVDARNKELIG- 393 (584)
T ss_dssp HHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSH-HHHHHHHHGGGCSC--HHHHHHHHHHHHHHHTTCSCHHHHH-
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHc-CcHHHHHHHHcCCC--HHHHHHHHHHHHHHhCChhHHHHHH-
Confidence 00123344566667777654444344444433333 56788888887764 7899999999999999999888884
Q ss_pred hhhHHHHHHHHHhcCCCCC---chhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc----chhHHHHHHHHH
Q 003365 590 TGGMLKELFNILFKEGMPE---NQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV----PLVRVNAARILR 662 (826)
Q Consensus 590 ~~~iI~~L~~iFl~~~~~~---~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d----~~~r~~AA~IL~ 662 (826)
.+.|..|++.+.+.+... ........|-.+|.+|+..+..|...|...+.|..|+.+|.+ ++..-.||.+|.
T Consensus 394 -~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~ 472 (584)
T 3l6x_A 394 -KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQ 472 (584)
T ss_dssp -HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHH
T ss_pred -hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 467799999544332000 023455678888999999999999999988999999999976 366779999999
Q ss_pred HHhhhcc
Q 003365 663 NLCASSG 669 (826)
Q Consensus 663 nLC~~s~ 669 (826)
||+.|..
T Consensus 473 nl~~~~e 479 (584)
T 3l6x_A 473 TIWGYKE 479 (584)
T ss_dssp HHHTSHH
T ss_pred HHHcCHH
Confidence 9998654
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.77 E-value=2.3e-07 Score=92.95 Aligned_cols=222 Identities=18% Similarity=0.180 Sum_probs=157.9
Q ss_pred hhhhhHHHHHHHHhhcc-ccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHH
Q 003365 462 TFNHLGLLILKKLARNH-DNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLR 540 (826)
Q Consensus 462 ~L~~~GL~IL~kLA~D~-~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR 540 (826)
+....++.+|.+|+.+. +|+..+.+. |.++.++.+...+ ...+...++..|..|+... ...|
T Consensus 17 ~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~------------~~~v~~~a~~~L~~l~~~~----~~~~ 79 (252)
T 4hxt_A 17 ETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTST------------DSEVQKEAARALANIASGP----DEAI 79 (252)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCS------------CHHHHHHHHHHHHHHTTSC----HHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhCC------------CHHHHHHHHHHHHHHHcCC----hHHH
Confidence 45678899999999744 477777655 8999999766321 1345577888999987652 3445
Q ss_pred HHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhcc-CCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 003365 541 REISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLA-LEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGE 619 (826)
Q Consensus 541 ~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA-~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGe 619 (826)
..+.+. ..+..|...|+++ +++.+..|+.+|.+|+ .+++.++.+.. .+.+..|++.+ .+ .+..++..|..
T Consensus 80 ~~~~~~-~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l-~~----~~~~~~~~a~~ 150 (252)
T 4hxt_A 80 KAIVDA-GGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLL-TS----TDSEVQKEAAR 150 (252)
T ss_dssp HHHHHT-THHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHT-TC----SCHHHHHHHHH
T ss_pred HHHHHC-CCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHH-cC----CCHHHHHHHHH
Confidence 566554 6788888888864 4899999999999999 55666665554 45678888844 43 22458889999
Q ss_pred HHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhH
Q 003365 620 ALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKL 697 (826)
Q Consensus 620 ALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~ 697 (826)
+|..|+..++.++..+...+.++.|+.+|.+ +..+..|+..|.|||.+.. +....+.+ ...+|.+++-+.+.+.+.
T Consensus 151 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~-~~~i~~L~~ll~~~~~~v 228 (252)
T 4hxt_A 151 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT-SAIKAIVD-AGGVEVLQKLLTSTDSEV 228 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH-HHHHHHHH-TTHHHHHHHGGGCSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHH-CCCHHHHHHHHCCCcHHH
Confidence 9999999888888888888999999999986 5788999999999997432 22111111 234555555444555566
Q ss_pred HHHHHHhHHHHhhc
Q 003365 698 QEVMIGLAAQVFRF 711 (826)
Q Consensus 698 LE~ligLa~qIc~~ 711 (826)
.+..+..-..++..
T Consensus 229 ~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 229 QKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 66666666666654
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.70 E-value=1.5e-07 Score=92.94 Aligned_cols=180 Identities=14% Similarity=0.165 Sum_probs=136.3
Q ss_pred hhhhhHHHHHHHHhh-ccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHH
Q 003365 462 TFNHLGLLILKKLAR-NHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLR 540 (826)
Q Consensus 462 ~L~~~GL~IL~kLA~-D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR 540 (826)
+....++..|.+|+. +++++..+.+. |.++.++.+.... ...+...++..|.+|+... ...+
T Consensus 27 ~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~------------~~~v~~~a~~~L~~l~~~~----~~~~ 89 (210)
T 4db6_A 27 QELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSP------------NEQILQEALWALSNIASGG----NEQI 89 (210)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCS------------CHHHHHHHHHHHHHHTTSC----HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcCC------------CHHHHHHHHHHHHHHhcCC----cHHH
Confidence 567788999999995 77777777666 9999999876321 1245577899999997532 2344
Q ss_pred HHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccc-cccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 003365 541 REISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDA-TERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGE 619 (826)
Q Consensus 541 ~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~-re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGe 619 (826)
+.|.+. ..+..|...|+++ +++.++.|+.+|.+|+.+.+. ++.+. ..++|..|++.+ .+ .+..++..|..
T Consensus 90 ~~i~~~-g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll-~~----~~~~v~~~a~~ 160 (210)
T 4db6_A 90 QAVIDA-GALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLL-SS----PNEQILQEALW 160 (210)
T ss_dssp HHHHHT-TCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHT-TC----SCHHHHHHHHH
T ss_pred HHHHHC-CCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCcHHHHHHHH-cC----CCHHHHHHHHH
Confidence 555544 7888888888876 489999999999999975443 23332 345778888854 32 23458889999
Q ss_pred HHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhh
Q 003365 620 ALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCAS 667 (826)
Q Consensus 620 ALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~ 667 (826)
+|..|+..++.++..+...+.++.|+.++.+ ++.+..|+..|++||.|
T Consensus 161 aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 9999999889999888777999999999986 57889999999999864
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.60 E-value=5.8e-07 Score=90.99 Aligned_cols=182 Identities=13% Similarity=0.159 Sum_probs=139.7
Q ss_pred chhhhhHHHHHHHHhh-ccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHH
Q 003365 461 WTFNHLGLLILKKLAR-NHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHL 539 (826)
Q Consensus 461 ~~L~~~GL~IL~kLA~-D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~L 539 (826)
.+....+...|.++.. +++|+..+.+. |.|+.++.+.... ...+...++..|..|+... ...
T Consensus 26 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~------------~~~v~~~a~~~L~~l~~~~----~~~ 88 (252)
T 4db8_A 26 MQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSP------------NEQILQEALWALSNIASGG----NEQ 88 (252)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGCS------------CHHHHHHHHHHHHHHTTSC----HHH
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcCC------------CHHHHHHHHHHHHHHhcCC----HHH
Confidence 3567788888977655 77888888766 8999999876321 1345577889999998632 234
Q ss_pred HHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCcccc-ccccchhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 003365 540 RREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDAT-ERIGGTGGMLKELFNILFKEGMPENQNCVRIAAG 618 (826)
Q Consensus 540 R~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~r-e~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AG 618 (826)
|..+.+. .++..|...|+++ +++.++.|+.+|.+|+.+.+.+ +.+.. .+.|..|++ ++..+ +..++..|.
T Consensus 89 ~~~i~~~-g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~-lL~~~----~~~v~~~a~ 159 (252)
T 4db8_A 89 IQAVIDA-GALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQ-LLSSP----NEQILQEAL 159 (252)
T ss_dssp HHHHHHT-THHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHH-GGGCS----CHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHH-HHhCC----CHHHHHHHH
Confidence 4556555 7888888998874 5899999999999999988877 44443 456688888 44432 345888999
Q ss_pred HHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhc
Q 003365 619 EALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCASS 668 (826)
Q Consensus 619 eALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s 668 (826)
.+|..|+..++.++..+...+.++.|+.+|.+ +..+..|+..|.|||.+.
T Consensus 160 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 160 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 211 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC
Confidence 99999998888888888878999999999986 578899999999999643
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.46 E-value=3.1e-05 Score=92.59 Aligned_cols=371 Identities=12% Similarity=0.104 Sum_probs=218.8
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCC-------------Cccc
Q 003365 379 SVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGA-------------ATDE 445 (826)
Q Consensus 379 ~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~-------------~~d~ 445 (826)
+..+.++++|.-. +.+-|.+|.+-+++|.-+..-.-.+..-+|+++.+..+|.+..+... +.+.
T Consensus 334 ~La~~~~~~L~~~---~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 334 QLSEIFINAISRR---IVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHHTTTC---CHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHhcC---CccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence 3445555555522 23349999999999987643333455568999999999986222110 0000
Q ss_pred chhhhhhccccccCcchhhhhHHHHHHHHh------------------hccc-cccccccccCchhhhhcccccchhhhc
Q 003365 446 IGEKKIILDHANYGFWTFNHLGLLILKKLA------------------RNHD-NCGKIGNTRGLLPKIIDFTHAEESLLR 506 (826)
Q Consensus 446 ~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA------------------~D~~-NC~~I~~t~gLIsKII~ft~~~~~ll~ 506 (826)
..+ ++ .+|.=|++.| ...+ ||..+.+. |.+|.++......+
T Consensus 411 ~~~-----e~----------~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea-GvIp~Lv~Ll~S~s---- 470 (778)
T 3opb_A 411 XXX-----XX----------XXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT-ELISFLKREMHNLS---- 470 (778)
T ss_dssp CCC-----CC----------C------------------CCTHHHHHHHHHHHHHHHTTTT-THHHHHHHHGGGSC----
T ss_pred cch-----hh----------hhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC-cCHHHHHHHHcCCC----
Confidence 000 00 0111111111 1122 78777777 89999886542211
Q ss_pred ccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCC-hHHHHHHHHHHHhccCCccccc
Q 003365 507 NEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKH-PLLQKLGIDILTSLALEEDATE 585 (826)
Q Consensus 507 ~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~-~eLq~lAi~ILt~LA~D~~~re 585 (826)
+ .+-..+.+++..|+.. ..-|.++.+. .++..|-.+|..+... .+.|+.|+..|++|++..+...
T Consensus 471 -----~---~~re~A~~aL~nLS~d-----~~~R~~lvqq-Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 471 -----P---NCKQQVVRIIYNITRS-----KNFIPQLAQQ-GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp -----H---HHHHHHHHHHHHHHTS-----GGGHHHHHHT-THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred -----H---HHHHHHHHHHHHHcCC-----HHHHHHHHHC-CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 1 1224677888888755 3445666665 7888899999876432 3489999999999998777655
Q ss_pred cccc--hhhHHHHHHHHHhcCCCCCc--------hh-hHHHHHHHHHHHHhccC----cchHHHHHhh-hhHHHHHHhhc
Q 003365 586 RIGG--TGGMLKELFNILFKEGMPEN--------QN-CVRIAAGEALAMLALDS----KSNCHRILKL-KVVDKLVETLA 649 (826)
Q Consensus 586 ~Ig~--~~~iI~~L~~iFl~~~~~~~--------~~-~lr~~AGeALamLa~es----~~Nc~~ILke-~vi~~Lv~mL~ 649 (826)
-+++ .-+.|..|+..+-+....+. .. ..+..|--||.+||..+ ++.+..|+++ +.+..|..+|.
T Consensus 537 ~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~ 616 (778)
T 3opb_A 537 IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML 616 (778)
T ss_dssp HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG
T ss_pred HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh
Confidence 5543 13677899985432110110 11 23668999999999876 3457889996 88999999887
Q ss_pred c--chhHHHHHHHHHHHhhhccc---chhhhhhhH-HhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCchhhHHHHHh
Q 003365 650 V--PLVRVNAARILRNLCASSGA---DCFNQLRGV-TAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFER 723 (826)
Q Consensus 650 d--~~~r~~AA~IL~nLC~~s~~---e~~~~Lk~l-~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~edfa~~l~~ 723 (826)
+ +..+..|+.++.||+.+... ++++.-+.- ...++..+.-.-.++-+..++..|.-+.+... .| ..++++-.
T Consensus 617 s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~-~~-~ia~~ll~ 694 (778)
T 3opb_A 617 DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT-IP-LIAKELLT 694 (778)
T ss_dssp CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-CH-HHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-Ch-HHHHHHHH
Confidence 5 46788899999999985432 232210000 11133333222233334555555544443321 11 12233322
Q ss_pred cCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhc-----CCccHHHHH-hhcHHHHHHHHHHHhhcccce
Q 003365 724 AGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRD-----KATNVHIFK-NLGLEMVLESVIETTAEIENF 796 (826)
Q Consensus 724 ~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~-----~~~y~~~f~-e~~m~eaL~~v~~T~S~lEny 796 (826)
...+++.|+++|..- .+.+++|.=.+-.+-.|++. ++.....|. .....++|..+.+..+.-|-|
T Consensus 695 ----~~~gi~~Ll~lL~~~----~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e~ 765 (778)
T 3opb_A 695 ----KKELIENAIQVFADQ----IDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEF 765 (778)
T ss_dssp ----CHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSST
T ss_pred ----ccccHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchHHH
Confidence 126889999999854 35788998888888999972 223444444 556889999988877655544
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.18 E-value=4.8e-05 Score=74.78 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=132.4
Q ss_pred hhhhhHHHHHccCCCChHHHHHHHHHHHhccC-CccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhc
Q 003365 548 FTISNIRDILLHGEKHPLLQKLGIDILTSLAL-EEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLAL 626 (826)
Q Consensus 548 f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~-D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~ 626 (826)
+....|...|++. +++.+..|...|.+|+. +++.++.+... +.|..|+..+ ..+ +..++..|..+|..|+.
T Consensus 12 ~~~~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL-~~~----~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 12 SELPQMVQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLL-SSP----NEQILQEALWALSNIAS 83 (210)
T ss_dssp -CHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHT-TCS----CHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHH-cCC----CHHHHHHHHHHHHHHhc
Confidence 4445666777654 58999999999999994 45555555433 5668888844 432 34588899999999999
Q ss_pred cCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHh
Q 003365 627 DSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGL 704 (826)
Q Consensus 627 es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligL 704 (826)
.++.++..+.+.+.++.|+.+|.+ +..+..|+..|.|||.+... ....+- -...+|.+++.+.+.+.+..+..++.
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQAVI-DAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHH-HHHHHH-HcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999888999999999986 47788999999999974432 111110 13456776666666666777777777
Q ss_pred HHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Q 003365 705 AAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAI 761 (826)
Q Consensus 705 a~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I 761 (826)
-..+|.. .++....+...| .+..|++.++. .-|.+|+-+++..-
T Consensus 162 L~~l~~~--~~~~~~~~~~~g-----~i~~L~~ll~~------~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 162 LSNIASG--GNEQKQAVKEAG-----ALEKLEQLQSH------ENEKIQKEAQEALE 205 (210)
T ss_dssp HHHHHTS--CHHHHHHHHHTT-----HHHHHHHGGGC------SCHHHHHHHHHHHH
T ss_pred HHHHHcC--CcHHHHHHHHCC-----CHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777763 234445554443 67788888762 24577776666443
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.09 E-value=1.2e-05 Score=83.71 Aligned_cols=208 Identities=13% Similarity=0.109 Sum_probs=148.8
Q ss_pred HHHHHhhcCCCc--chhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc-
Q 003365 336 IFGMELLDSNSP--DEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGK- 412 (826)
Q Consensus 336 tFA~dll~S~S~--~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~- 412 (826)
...|++|.|+++ +-|..++..|..+....+-..+. | ...+.|..||++|... +.+++..||..+..||.+
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~---I-~~~G~Ip~LV~lL~s~---~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKR---V-NQLRGILKLLQLLKVQ---NEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH---H-HHTTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHH---H-HHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCC
Confidence 456899999988 66789999998887543211111 2 2337799999999753 478999999999999974
Q ss_pred CCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchh
Q 003365 413 KQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLP 492 (826)
Q Consensus 413 ~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIs 492 (826)
..|...|.. -|+|+.+..||....+ ++...+....|-+|+..++|+..|.+. | |+
T Consensus 84 ~~nk~~I~~-~GaI~~Lv~lL~~~~~----------------------~~~~e~a~~aL~nLS~~~~~k~~i~~~-~-i~ 138 (233)
T 3tt9_A 84 NDNKLEVAE-LNGVPRLLQVLKQTRD----------------------LETKKQITGLLWNLSSNDKLKNLMITE-A-LL 138 (233)
T ss_dssp HHHHHHHHH-TTHHHHHHHHHHHCCC----------------------HHHHHHHHHHHHHHHTSGGGHHHHHHH-H-HH
T ss_pred HHHHHHHHH-cCCHHHHHHHHccCCC----------------------HHHHHHHHHHHHHHHcChhhHHHHHhc-c-HH
Confidence 445555655 5999999999974211 134556778899999999999999864 4 77
Q ss_pred hhhcccc--cchhhhcc-c-CCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHcc----CCCCh
Q 003365 493 KIIDFTH--AEESLLRN-E-HDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLH----GEKHP 564 (826)
Q Consensus 493 KII~ft~--~~~~ll~~-~-~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~----~~~~~ 564 (826)
.++.... .+.....+ . .....+..+...+--.|+.|++. +..-|++|-+++.++..|..+|+. ++.+.
T Consensus 139 ~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~----~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~ 214 (233)
T 3tt9_A 139 TLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA----GADGRKAMRRCDGLIDSLVHYVRGTIADYQPDD 214 (233)
T ss_dssp HHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTS----CHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcC----CHHHHHHHHHCCCcHHHHHHHHHhhhhcccchh
Confidence 7776442 11111000 0 00112457778888899999986 244588898898999999999974 44567
Q ss_pred HHHHHHHHHHHhccC
Q 003365 565 LLQKLGIDILTSLAL 579 (826)
Q Consensus 565 eLq~lAi~ILt~LA~ 579 (826)
..++-|+.+|+||..
T Consensus 215 k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 215 KATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999999974
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.09 E-value=2e-05 Score=81.91 Aligned_cols=184 Identities=12% Similarity=0.093 Sum_probs=135.1
Q ss_pred hhhhHHHHHHHHhh-ccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHH
Q 003365 463 FNHLGLLILKKLAR-NHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRR 541 (826)
Q Consensus 463 L~~~GL~IL~kLA~-D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~ 541 (826)
+...+...|.+|+. |++|-..|.+. |.||+++.+....+ .++-+.+...|+.|+... ..=|.
T Consensus 26 ~q~~Aa~~l~~L~~~~~~~r~~I~~~-G~Ip~LV~lL~s~~------------~~vq~~Aa~aL~nLa~~~----~~nk~ 88 (233)
T 3tt9_A 26 RISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKVQN------------EDVQRAVCGALRNLVFED----NDNKL 88 (233)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHT-THHHHHHHGGGCCC------------HHHHHHHHHHHHHHHTTC----HHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHc-CCHHHHHHHHcCCC------------HHHHHHHHHHHHHHHhCC----HHHHH
Confidence 34556778899995 88898889877 88999998874321 233456788888998632 23356
Q ss_pred HHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHh-c-CCCC---------Cch
Q 003365 542 EISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILF-K-EGMP---------ENQ 610 (826)
Q Consensus 542 eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl-~-~~~~---------~~~ 610 (826)
.|.+. .++..|.++|+.. .+.+.|+.|+.+|-+|+..++.+..|.. ++ |..|++... + .+.. .++
T Consensus 89 ~I~~~-GaI~~Lv~lL~~~-~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~-i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 89 EVAEL-NGVPRLLQVLKQT-RDLETKKQITGLLWNLSSNDKLKNLMIT-EA-LLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHT-THHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSGGGHHHHHH-HH-HHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHc-CCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcChhhHHHHHh-cc-HHHHHHHHhccccCCcccccccccccch
Confidence 77776 8899999999753 3488999999999999999888888864 33 566666332 0 0100 123
Q ss_pred hhHHHHHHHHHHHHhccCcchHHHHHhh-hhHHHHHHhhcc--------chhHHHHHHHHHHHhhh
Q 003365 611 NCVRIAAGEALAMLALDSKSNCHRILKL-KVVDKLVETLAV--------PLVRVNAARILRNLCAS 667 (826)
Q Consensus 611 ~~lr~~AGeALamLa~es~~Nc~~ILke-~vi~~Lv~mL~d--------~~~r~~AA~IL~nLC~~ 667 (826)
..++..|+.+|..|+..++++-..|-.. ..|+.|+..++. ++-...|..+|+|||.+
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 3577789999999999888888888665 788999988763 35567999999999853
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.06 E-value=0.00011 Score=78.60 Aligned_cols=179 Identities=12% Similarity=0.127 Sum_probs=137.6
Q ss_pred hhhHHHHHHHHhhccccccccccccCchhhhhc-ccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHH
Q 003365 464 NHLGLLILKKLARNHDNCGKIGNTRGLLPKIID-FTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRRE 542 (826)
Q Consensus 464 ~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~-ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~e 542 (826)
....+.+|..|..+.+|-..+.+. |-++.++. +... . ...+-..++.+|..++.. ....|+.
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~-G~l~~Lv~~lL~s-------~-----~~~vr~~Aa~~Lg~ia~~----n~~~~~~ 119 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQL-SGMHLLVGRYLEA-------G-----AAGLRWRAAQLIGTCSQN----VAAIQEQ 119 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHT-THHHHHHHTTTTC-------S-----SHHHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHc-CCHHHHHHHHHcC-------C-----CHHHHHHHHHHHHHHHhC----CHHHHHH
Confidence 566889999999988888888765 77888887 5532 1 124556899999998854 2456777
Q ss_pred HhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCc-cccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 003365 543 ISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEE-DATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEAL 621 (826)
Q Consensus 543 IS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~-~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeAL 621 (826)
|.+. .++..|...|..+ .+++.++-|+..|++|+-+. +..+.+... +.|..|+..+ .+ .+..++..|..||
T Consensus 120 vv~~-g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~-ggi~~L~~lL-~~----~d~~v~~~A~~aL 191 (296)
T 1xqr_A 120 VLGL-GALRKLLRLLDRD-ACDTVRVKALFAISCLVREQEAGLLQFLRL-DGFSVLMRAM-QQ----QVQKLKVKSAFLL 191 (296)
T ss_dssp HHHT-THHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHH-HS----SCHHHHHHHHHHH
T ss_pred HHHC-CCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHC-CCHHHHHHHH-cC----CCHHHHHHHHHHH
Confidence 7776 7889999999864 24889999999999998654 333334333 3457777754 32 2345888999999
Q ss_pred HHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhh
Q 003365 622 AMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCAS 667 (826)
Q Consensus 622 amLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~ 667 (826)
..|+..++.++..+.+.++++.|+.+|.+ ++.+..|+..|.||...
T Consensus 192 s~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 192 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999888999999999985 68999999999999975
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.73 E-value=0.0012 Score=70.61 Aligned_cols=186 Identities=16% Similarity=0.162 Sum_probs=129.8
Q ss_pred ChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHH
Q 003365 563 HPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVD 642 (826)
Q Consensus 563 ~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~ 642 (826)
+.+.+..|.++|.+|.-+.+....+...+++ ..|+..++.+ ....++..|..+|+.++..++.+...+++.+.+.
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l-~~Lv~~lL~s----~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~ 127 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGM-HLLVGRYLEA----GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALR 127 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHH-HHHHHTTTTC----SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCH-HHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence 3578889999999998776665665444443 5666633443 2345888999999999988888778888889999
Q ss_pred HHHHhhcc---chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCchhhHH
Q 003365 643 KLVETLAV---PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSN 719 (826)
Q Consensus 643 ~Lv~mL~d---~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~edfa~ 719 (826)
.|+.+|.+ +..+..|+.-|.|||.+..+.- ...- -...+|.+.+-+-+.+-+.+.-...+.+.++.- ++ +..+
T Consensus 128 ~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~-~~~~-~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~-~~~~ 203 (296)
T 1xqr_A 128 KLLRLLDRDACDTVRVKALFAISCLVREQEAGL-LQFL-RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HP-EHKG 203 (296)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHH-HHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CG-GGHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHH-HHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-Ch-HHHH
Confidence 99999973 4789999999999998544310 1111 135677666665566666666667777777765 33 4455
Q ss_pred HHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCC
Q 003365 720 IFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKA 768 (826)
Q Consensus 720 ~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~ 768 (826)
.+-..| .++.|++.|.. | -|.+|..++..+-.++..+.
T Consensus 204 ~vv~~g-----~i~~Lv~LL~~---~---d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 204 TLCSMG-----MVQQLVALVRT---E---HSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHTT-----HHHHHHHHHTS---C---CSTHHHHHHHHHHHHHTTCH
T ss_pred HHHHcC-----CHHHHHHHHcC---C---ChhHHHHHHHHHHHHHhCCh
Confidence 554444 77888998873 2 46889888887777776643
No 39
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.22 E-value=0.11 Score=61.28 Aligned_cols=362 Identities=10% Similarity=0.074 Sum_probs=201.4
Q ss_pred chhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCc--------------hHHHHHhccCHHHHHHHHHHhCCCCc----c
Q 003365 333 DMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFS--------------DDTLQKIGINLSVIERFVEMLNWKDP----Q 394 (826)
Q Consensus 333 ~LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~--------------~~~L~kl~tS~~~i~rLi~ML~wts~----~ 394 (826)
.++.+-...+.+...+-...++..+.++....... ...+++. -...+..|++.|..... +
T Consensus 266 ~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~il~~ll~~l~~~~~d~~d~ 343 (861)
T 2bpt_A 266 ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS--IKDVVPNLLNLLTRQNEDPEDD 343 (861)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH--HHHHHHHHHHHTTCCCCC-CCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH--HHHHHHHHHHHHHhcccccccc
Confidence 45566566666656666788888888887653210 0011111 14567778877764321 1
Q ss_pred cHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHH
Q 003365 395 EEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKL 474 (826)
Q Consensus 395 d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kL 474 (826)
+..+|..|+..+..|+.. +.-.-+|..++.+..+|.. ..|.....++..|..+
T Consensus 344 ~~~~r~~a~~~L~~l~~~----~~~~~~~~l~~~l~~~l~~-----------------------~~~~~r~~a~~~l~~i 396 (861)
T 2bpt_A 344 DWNVSMSAGACLQLFAQN----CGNHILEPVLEFVEQNITA-----------------------DNWRNREAAVMAFGSI 396 (861)
T ss_dssp CCHHHHHHHHHHHHHHHH----HGGGGHHHHHHHHHHHTTC-----------------------SSHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHH----ccHhHHHHHHHHHHHHcCC-----------------------CChhHHHHHHHHHHHH
Confidence 247999999999999964 2111234455555554432 1355666778888888
Q ss_pred hhcccccc--cccc-ccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhh---cch
Q 003365 475 ARNHDNCG--KIGN-TRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISE---VVF 548 (826)
Q Consensus 475 A~D~~NC~--~I~~-t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~---~~f 548 (826)
+. .|. .+.. -..+++.++... .+. ...+-..++..+.+++...+. ++.. .+.
T Consensus 397 ~~---~~~~~~~~~~l~~il~~l~~~l-------~d~-----~~~vr~~a~~~l~~l~~~~~~-------~~~~~~~~~~ 454 (861)
T 2bpt_A 397 MD---GPDKVQRTYYVHQALPSILNLM-------NDQ-----SLQVKETTAWCIGRIADSVAE-------SIDPQQHLPG 454 (861)
T ss_dssp SS---SSCHHHHHHHHHHHHHHHHHGG-------GCS-----CHHHHHHHHHHHHHHHHHHGG-------GSCTTTTHHH
T ss_pred Hc---CCCHHHHHHHHHHHHHHHHHHc-------CCC-----cHHHHHHHHHHHHHHHHHhhh-------hcCCHHHHHH
Confidence 73 222 1110 012333333222 221 122334567777777654332 1111 123
Q ss_pred hhhhHHHHHccCCCChHHHHHHHHHHHhccCCcc--ccccc-cchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHh
Q 003365 549 TISNIRDILLHGEKHPLLQKLGIDILTSLALEED--ATERI-GGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLA 625 (826)
Q Consensus 549 ~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~--~re~I-g~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa 625 (826)
++..|.+.|++. +..+.-|...|.+++-.-+ .++.+ ...+.++..|+..+-..+ .+..+|..|-++|..++
T Consensus 455 ~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d---~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 455 VVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID---NEFNARASAFSALTTMV 528 (861)
T ss_dssp HHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC---CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcC---cchHHHHHHHHHHHHHH
Confidence 444555555442 7888889999988853211 01222 123567777777654322 22358888999999998
Q ss_pred ccCcchHHHHHhh---hhHHHHHHh-------hc------cchhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHH
Q 003365 626 LDSKSNCHRILKL---KVVDKLVET-------LA------VPLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKA 689 (826)
Q Consensus 626 ~es~~Nc~~ILke---~vi~~Lv~m-------L~------d~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~ 689 (826)
......+...+.. ..++.|... +. ....+..+...|.++|...+++... .+...+|.+++.
T Consensus 529 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~l~~~l~~~ 605 (861)
T 2bpt_A 529 EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP---VADMLMGLFFRL 605 (861)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG---GHHHHHHHHHHH
T ss_pred HHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHH
Confidence 8777666555443 233333332 11 1245667888899998866653321 144555555555
Q ss_pred Hhchhh-hHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCC
Q 003365 690 ITSEDY-KLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKA 768 (826)
Q Consensus 690 I~~~e~-k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~ 768 (826)
+-+.+. ...|..+.....+++.. .++|...+. .++..|.+.|+. +-|.+|+.+++.+-.+.+..+
T Consensus 606 l~~~~~~~v~~~~~~~l~~l~~~~-~~~~~~~l~-------~i~~~l~~~l~~------~~~~vr~~a~~~l~~l~~~~~ 671 (861)
T 2bpt_A 606 LEKKDSAFIEDDVFYAISALAASL-GKGFEKYLE-------TFSPYLLKALNQ------VDSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp HHSTTGGGTHHHHHHHHHHHHHHH-GGGGHHHHH-------HHHHHHHHHHHC------TTSHHHHHHHHHHHHHHHHTG
T ss_pred HccCCCCcHHHHHHHHHHHHHHHH-hhhHHHHHH-------HHHHHHHHHhcc------ccHHHHHHHHHHHHHHHHHhc
Confidence 444433 55565555555566544 456655443 477778887742 345688888887776666544
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.98 E-value=0.2 Score=59.93 Aligned_cols=302 Identities=14% Similarity=0.154 Sum_probs=169.0
Q ss_pred HHHHHhhc---CCCcchhhhhhHHHHHHhhCcCC--chHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh
Q 003365 336 IFGMELLD---SNSPDEQLIGARILRQFAMSKRF--SDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLA 410 (826)
Q Consensus 336 tFA~dll~---S~S~~~qL~GvriL~~~l~~~~~--~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA 410 (826)
.|-..++. +.++.-+..++-.|.+.+.+... ..+. -...-+.|++.|+ + .+..+|..||.+++.+|
T Consensus 48 ~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~------~~~ik~~ll~~l~--~-~~~~vr~~~a~~i~~ia 118 (852)
T 4fdd_A 48 NYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV------TDFIKSECLNNIG--D-SSPLIRATVGILITTIA 118 (852)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHH------HHHHHHHHHTTTT--C-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHH------HHHHHHHHHHHHc--C-CCHHHHHHHHHHHHHHH
Confidence 34444444 23333345555677777765321 1111 1234456677665 2 34689999999999999
Q ss_pred ccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhcccccccccc----
Q 003365 411 GKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGN---- 486 (826)
Q Consensus 411 ~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~---- 486 (826)
... -...-|..++.+..++..++ +.....++.+|.++..+...- +.+
T Consensus 119 ~~~----~~~~wp~ll~~L~~~l~~~~-----------------------~~~r~~al~~L~~i~~~~~~~--~~~~~~~ 169 (852)
T 4fdd_A 119 SKG----ELQNWPDLLPKLCSLLDSED-----------------------YNTCEGAFGALQKICEDSAEI--LDSDVLD 169 (852)
T ss_dssp HHT----TTTTCTTHHHHHHHHHSCSS-----------------------HHHHHHHHHHHHHHHHHHTTH--HHHCSSS
T ss_pred Hhc----CccccHHHHHHHHHHHcCCC-----------------------HHHHHHHHHHHHHHHHHhHHH--hchhhhc
Confidence 752 12345777777777665431 133556888888887532211 111
Q ss_pred --ccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhc-chhhhhHHHHHccCCCC
Q 003365 487 --TRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEV-VFTISNIRDILLHGEKH 563 (826)
Q Consensus 487 --t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~-~f~lsNL~~IL~~~~~~ 563 (826)
-..++++++.+.. +. ...+-..+++.+..++...++ .+..+ +.++..|...+.+. +
T Consensus 170 ~~~~~il~~l~~~l~-------~~-----~~~vR~~A~~aL~~~~~~~~~-------~~~~~~~~~l~~l~~~~~d~--~ 228 (852)
T 4fdd_A 170 RPLNIMIPKFLQFFK-------HS-----SPKIRSHAVACVNQFIISRTQ-------ALMLHIDSFIENLFALAGDE--E 228 (852)
T ss_dssp SCHHHHHHHHTTTTT-------CS-----SHHHHHHHHHHHHTTTTTTCH-------HHHTSHHHHHHHHHHHHTCC--C
T ss_pred chHHHHHHHHHHHhc-------CC-----CHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHHHHHHHcCCC--C
Confidence 1245666554332 11 123345678888766643221 12221 34556666666553 5
Q ss_pred hHHHHHHHHHHHhccCCccccccc-cchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhh---h
Q 003365 564 PLLQKLGIDILTSLALEEDATERI-GGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKL---K 639 (826)
Q Consensus 564 ~eLq~lAi~ILt~LA~D~~~re~I-g~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke---~ 639 (826)
++.++.|.++|.+|+-... +.+ ...+.++..++..+-+ .++.+|..|.+.+..++... .|...++. .
T Consensus 229 ~~vr~~a~~~L~~l~~~~~--~~~~~~l~~l~~~l~~~~~~-----~~~~vr~~a~e~l~~l~~~~--~~~~~~~~~~~~ 299 (852)
T 4fdd_A 229 PEVRKNVCRALVMLLEVRM--DRLLPHMHNIVEYMLQRTQD-----QDENVALEACEFWLTLAEQP--ICKDVLVRHLPK 299 (852)
T ss_dssp HHHHHHHHHHHHHHHHHCH--HHHGGGHHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHTTST--THHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHccC-----CcHHHHHHHHHHHHHHhcch--hHHHHHHHHHHH
Confidence 8999999999999974222 111 1234555555554322 34568889999998887432 45555544 4
Q ss_pred hHHHHHHhh-----------cc-------------chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhh
Q 003365 640 VVDKLVETL-----------AV-------------PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDY 695 (826)
Q Consensus 640 vi~~Lv~mL-----------~d-------------~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~ 695 (826)
.+..|...+ .| ...|..|+..|..|+...+++. +...+|.+.+.+-+.+-
T Consensus 300 l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~------~~~l~~~l~~~l~~~~~ 373 (852)
T 4fdd_A 300 LIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDEL------LPHILPLLKELLFHHEW 373 (852)
T ss_dssp HHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGG------HHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHH------HHHHHHHHHHHhcCCCH
Confidence 555555544 22 1248899999999997655332 33455555555555555
Q ss_pred hHHHHHHHhHHHHhhc
Q 003365 696 KLQEVMIGLAAQVFRF 711 (826)
Q Consensus 696 k~LE~ligLa~qIc~~ 711 (826)
+..++.+-.-.+|.+.
T Consensus 374 ~~R~aa~~alg~i~~~ 389 (852)
T 4fdd_A 374 VVKESGILVLGAIAEG 389 (852)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5555554444455543
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.94 E-value=0.028 Score=66.03 Aligned_cols=301 Identities=15% Similarity=0.172 Sum_probs=187.4
Q ss_pred chhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc
Q 003365 333 DMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGK 412 (826)
Q Consensus 333 ~LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~ 412 (826)
+-++==+++|++++-+-.++.++.|..++...+. ++-+-|.+.|..|.+|+++|+-.+ +.+|--|.-.+.+|+.+
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~--~~Q~~Il~~p~gi~~Lv~lL~d~r---E~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGP--QVQQIILVSPMGVSRLMDLLADSR---EVIRNDGVLLLQALTRS 196 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHH--HHHHHHHHSTTHHHHHHGGGGCSS---HHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcH--HHHHHHHhCcccHHHHHHHHhCch---HHHHHHHHHHHHHHhcC
Confidence 3455568899999999999999999999986542 233457789999999999998443 78999999999999987
Q ss_pred CCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhh-ccccccccccccCch
Q 003365 413 KQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLAR-NHDNCGKIGNTRGLL 491 (826)
Q Consensus 413 ~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~-D~~NC~~I~~t~gLI 491 (826)
..+-=.++.|-|+++.+-++++..+.. + | -...---|.+|..|++ |.-|=.-+. ..|.+
T Consensus 197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~----~--G-------------givv~DCL~ll~nLLr~N~sNQ~~Fr-Et~~i 256 (651)
T 3grl_A 197 NGAIQKIVAFENAFERLLDIITEEGNS----D--G-------------GIVVEDCLILLQNLLKNNNSNQNFFK-EGSYI 256 (651)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTGG----G--S-------------HHHHHHHHHHHHHHHTTCHHHHHHHH-HTTCG
T ss_pred CHHHHHHHHHhccHHHHHHHHHhcCCC----c--c-------------chhHHHHHHHHHHHHhcCHHHHHHHH-HcCCH
Confidence 555445778889999999998875420 0 0 0122335788999997 544644444 44899
Q ss_pred hhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhh-HHHH-HHhhcchhhhhHHHHHccCCCChHHHHH
Q 003365 492 PKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGE-HLRR-EISEVVFTISNIRDILLHGEKHPLLQKL 569 (826)
Q Consensus 492 sKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~-~LR~-eIS~~~f~lsNL~~IL~~~~~~~eLq~l 569 (826)
++++.+...... .....++...-+-..|++++.|++..+..+. .--| .+.++ ..+..|-+++-...-...++..
T Consensus 257 ~~L~~LL~~~~~---~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~-g~l~~Ll~ll~~~~~p~~i~~~ 332 (651)
T 3grl_A 257 QRMKPWFEVGDE---NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQC-GLLQQLCTILMATGVPADILTE 332 (651)
T ss_dssp GGGGGGGCCCSC---SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHT-THHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHhCCCcc---ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHccCCCCHHHHHH
Confidence 999876643211 1112222222233599999999998665422 2222 33333 5666677776655445667777
Q ss_pred HHHHHHhccCCccc-cccccc--------hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhh--
Q 003365 570 GIDILTSLALEEDA-TERIGG--------TGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKL-- 638 (826)
Q Consensus 570 Ai~ILt~LA~D~~~-re~Ig~--------~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke-- 638 (826)
|+..+..+.-+-.. .+.+.. ...+|..|+. ++++. ..-.+|..|...+.-....+...=..|...
T Consensus 333 Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~-~~~~~---~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~ll 408 (651)
T 3grl_A 333 TINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMS-MVNER---QPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLL 408 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHH-HTCTT---SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHH-Hhccc---ccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcC
Confidence 77777765433222 222221 2457777776 34332 223578888888877766654322222211
Q ss_pred ----h------hHH-HHHHhh-ccchhH-HHHHHHHHHHhh
Q 003365 639 ----K------VVD-KLVETL-AVPLVR-VNAARILRNLCA 666 (826)
Q Consensus 639 ----~------vi~-~Lv~mL-~d~~~r-~~AA~IL~nLC~ 666 (826)
+ ... .|...| ..+.|+ -.||.||.||-.
T Consensus 409 p~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~ 449 (651)
T 3grl_A 409 PSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQ 449 (651)
T ss_dssp SCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred CcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHc
Confidence 0 011 122222 234566 478999999875
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.77 E-value=0.13 Score=61.48 Aligned_cols=316 Identities=15% Similarity=0.126 Sum_probs=166.0
Q ss_pred hhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEe
Q 003365 341 LLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVA 420 (826)
Q Consensus 341 ll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~ 420 (826)
.+++.+++-+...++.|..|+.... +.+. ..-+..+..|++.++ ..+.++|..|.+.+..++......+. .
T Consensus 182 ~l~~~~~~vR~~A~~aL~~~~~~~~---~~~~--~~~~~~l~~l~~~~~---d~~~~vr~~a~~~L~~l~~~~~~~~~-~ 252 (852)
T 4fdd_A 182 FFKHSSPKIRSHAVACVNQFIISRT---QALM--LHIDSFIENLFALAG---DEEPEVRKNVCRALVMLLEVRMDRLL-P 252 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHTTTTTTC---HHHH--TSHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHHHHCHHHHG-G
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccc---HHHH--HHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHhCHHHHH-H
Confidence 3445566667778888877775322 1111 112356677777654 34679999999999999973110000 1
Q ss_pred cccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhcccccccccc--ccCchhhhhccc
Q 003365 421 GIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGN--TRGLLPKIIDFT 498 (826)
Q Consensus 421 ~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~--t~gLIsKII~ft 498 (826)
.+++.++.+..++... +.+.....+..+..++... .|.+... ...+++.++...
T Consensus 253 ~l~~l~~~l~~~~~~~-----------------------~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l 308 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQ-----------------------DENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGM 308 (852)
T ss_dssp GHHHHHHHHHHHHTCS-----------------------SHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCC-----------------------cHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHc
Confidence 1223333333333211 0123444555555655432 3333211 113444444332
Q ss_pred ccch---hhhccc---CCC-----hhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHH
Q 003365 499 HAEE---SLLRNE---HDT-----SSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQ 567 (826)
Q Consensus 499 ~~~~---~ll~~~---~~~-----~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq 567 (826)
.++. .++..+ ++. +.| .+-+.+.+.+.+|+...|+. +. +.++.-+.+.|++. +...|
T Consensus 309 ~~~e~d~~~~~~d~~ed~~~dd~~~~~-~vr~~a~~~L~~la~~~~~~-------~~--~~l~~~l~~~l~~~--~~~~R 376 (852)
T 4fdd_A 309 KYSDIDIILLKGDVEGGSGGDDTISDW-NLRKCSAAALDVLANVYRDE-------LL--PHILPLLKELLFHH--EWVVK 376 (852)
T ss_dssp SCCHHHHHHHHC------------CCC-CHHHHHHHHHHHHHHHHGGG-------GH--HHHHHHHHHHHTCS--SHHHH
T ss_pred CCcHhHHHHhcCCcccccccccccccc-hHHHHHHHHHHHHHHhccHH-------HH--HHHHHHHHHHhcCC--CHHHH
Confidence 2111 000011 000 112 12245777788888765531 11 23455566666654 58899
Q ss_pred HHHHHHHHhccCCccccccc-cchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHH
Q 003365 568 KLGIDILTSLALEEDATERI-GGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVE 646 (826)
Q Consensus 568 ~lAi~ILt~LA~D~~~re~I-g~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~ 646 (826)
+.|+..|.+++-... +.+ ...+.++..|+..+ .. ....+|..|..+|..++.........-.-..++..|..
T Consensus 377 ~aa~~alg~i~~~~~--~~~~~~l~~~l~~l~~~l-~d----~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~ 449 (852)
T 4fdd_A 377 ESGILVLGAIAEGCM--QGMIPYLPELIPHLIQCL-SD----KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK 449 (852)
T ss_dssp HHHHHHHHHTTTTTH--HHHGGGHHHHHHHHHHHT-TC----SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHc-CC----CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 999999999974322 122 22345666666644 21 23468889999999887532211100011156778888
Q ss_pred hhcc--chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhc
Q 003365 647 TLAV--PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRF 711 (826)
Q Consensus 647 mL~d--~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~ 711 (826)
.|.| +..|..|+.-|.++|...+++...- +...++.+++.+-+.+.+.+++++.-...|++.
T Consensus 450 ~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~---l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~ 513 (852)
T 4fdd_A 450 RILDSNKRVQEAACSAFATLEEEACTELVPY---LAYILDTLVFAFSKYQHKNLLILYDAIGTLADS 513 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH---HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 8865 5788999999999998766542211 333444444444334455555555555555543
No 43
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.56 E-value=0.32 Score=57.44 Aligned_cols=368 Identities=14% Similarity=0.126 Sum_probs=192.9
Q ss_pred chhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCC------------------chHHHHHhccCHHHHHHHHHHhCCCC--
Q 003365 333 DMVIFGMELLDSNSPDEQLIGARILRQFAMSKRF------------------SDDTLQKIGINLSVIERFVEMLNWKD-- 392 (826)
Q Consensus 333 ~LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~------------------~~~~L~kl~tS~~~i~rLi~ML~wts-- 392 (826)
+++.+-...+.+..++-....+..+..+.+.... .....+.. -.+.+..++++|....
T Consensus 259 ~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ll~~ll~~l~~~~~d 336 (876)
T 1qgr_A 259 ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA--LQYLVPILTQTLTKQDEN 336 (876)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH--HHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH--HHHHhHHHHHHhhccccc
Confidence 5666666666655555566677777777653210 00001100 1345666777775322
Q ss_pred --cccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHH
Q 003365 393 --PQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLI 470 (826)
Q Consensus 393 --~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~I 470 (826)
..+-.+|..|+..+..++..... .-+|..++.+...|.. ..|....-++..
T Consensus 337 ~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~-----------------------~~~~~r~~a~~~ 389 (876)
T 1qgr_A 337 DDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKN-----------------------PDWRYRDAAVMA 389 (876)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTC-----------------------SSHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccC-----------------------CChHHHHHHHHH
Confidence 12346999999999999864111 1134455544444431 136667778888
Q ss_pred HHHHhhccccccccc-cccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchh
Q 003365 471 LKKLARNHDNCGKIG-NTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFT 549 (826)
Q Consensus 471 L~kLA~D~~NC~~I~-~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~ 549 (826)
|..++..... ..+. --..+++.++.. +.+. ...+-..++..+.+++...+.... .. .-.+.+
T Consensus 390 l~~i~~~~~~-~~~~~~~~~~l~~l~~~-------l~d~-----~~~vr~~a~~~l~~~~~~~~~~~~-~~---~~l~~~ 452 (876)
T 1qgr_A 390 FGCILEGPEP-SQLKPLVIQAMPTLIEL-------MKDP-----SVVVRDTAAWTVGRICELLPEAAI-ND---VYLAPL 452 (876)
T ss_dssp HHHTSSSSCH-HHHHHHHHHHHHHHHHH-------HTCS-----SHHHHHHHHHHHHHHHHHCGGGTS-ST---TTHHHH
T ss_pred HHHHHcCCCH-HHHHHHHHHHHHHHHHH-------hCCC-----CHHHHHHHHHHHHHHHHhCchhcc-cH---HHHHHH
Confidence 8888753210 0011 011244444432 2221 123345688888888876443100 00 001234
Q ss_pred hhhHHHHHccCCCChHHHHHHHHHHHhccCCcc------------cccccc-chhhHHHHHHHHHhcCCCCCchhhHHHH
Q 003365 550 ISNIRDILLHGEKHPLLQKLGIDILTSLALEED------------ATERIG-GTGGMLKELFNILFKEGMPENQNCVRIA 616 (826)
Q Consensus 550 lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~------------~re~Ig-~~~~iI~~L~~iFl~~~~~~~~~~lr~~ 616 (826)
+..|-..|++ ++..+..|+..|.+++-.-. ..+.+. ..+.++..|+..+-..+ .+...++..
T Consensus 453 l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~--~~~~~~r~~ 527 (876)
T 1qgr_A 453 LQCLIEGLSA---EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD--GHQNNLRSS 527 (876)
T ss_dssp HHHHHHHTTS---CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS--SCSTTHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcC--cchhhHHHH
Confidence 4555555554 37889999999998863211 111122 23567777777554332 123458888
Q ss_pred HHHHHHHHhccCcchHHHHHhh---hhHHHHHHhh-------cc------chhHHHHHHHHHHHhhhcc-cchhhhhhhH
Q 003365 617 AGEALAMLALDSKSNCHRILKL---KVVDKLVETL-------AV------PLVRVNAARILRNLCASSG-ADCFNQLRGV 679 (826)
Q Consensus 617 AGeALamLa~es~~Nc~~ILke---~vi~~Lv~mL-------~d------~~~r~~AA~IL~nLC~~s~-~e~~~~Lk~l 679 (826)
+-++|..|+.....++...+.. .+++.+...+ .+ +..+..+...|..+|...+ .+... .+
T Consensus 528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~ 604 (876)
T 1qgr_A 528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ---IS 604 (876)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHT---TH
T ss_pred HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhH---HH
Confidence 9999999987766666555443 2333333321 12 2235567778888887655 32211 13
Q ss_pred HhHHHHHHHHHhchhh--hHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHH
Q 003365 680 TAAAPTILKAITSEDY--KLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAI 757 (826)
Q Consensus 680 ~~alp~VL~~I~~~e~--k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~v 757 (826)
...+|.+++.+.+..+ ...|..+.+...|++.. .++|...++ .++..|...|+.. +.+.+|..++
T Consensus 605 ~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~-------~~~~~l~~~l~~~-----~~~~vr~~a~ 671 (876)
T 1qgr_A 605 DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL-GGEFLKYME-------AFKPFLGIGLKNY-----AEYQVCLAAV 671 (876)
T ss_dssp HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH-GGGGGGGHH-------HHHHHHHHHHHHC-----TTHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHH-HhhHHHHHH-------HHHHHHHHHHcCc-----chHHHHHHHH
Confidence 4445555544434332 34555555555555543 344433222 4666777777643 3456888877
Q ss_pred HHHHHHHhcC
Q 003365 758 ELAIWMMRDK 767 (826)
Q Consensus 758 E~~I~mm~~~ 767 (826)
+.+-.+.+..
T Consensus 672 ~~l~~l~~~~ 681 (876)
T 1qgr_A 672 GLVGDLCRAL 681 (876)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666543
No 44
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.29 E-value=1.1 Score=52.66 Aligned_cols=371 Identities=9% Similarity=0.016 Sum_probs=193.7
Q ss_pred chhHHHHHhhcCC-CcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 003365 333 DMVIFGMELLDSN-SPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAG 411 (826)
Q Consensus 333 ~LVtFA~dll~S~-S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~ 411 (826)
+|+.+=++.+.++ +++-...++++|..+.+.-....+.+ -......++.+++.|... ..+.++|..|++.+..+..
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~--~~~~~~ll~~l~~~l~~~-~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL--VSSSNNILIAIVQGAQST-ETSKAVRLAALNALADSLI 210 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT--GGGHHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHH--HHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHH
Confidence 5777777788777 66667788899999987421110000 011234566666666532 1257899999999998764
Q ss_pred cCCCceEEe-cccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCc
Q 003365 412 KKQNSLRVA-GIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGL 490 (826)
Q Consensus 412 ~~~nsLrv~-~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gL 490 (826)
.-...+... ..+..++.+..++. ...|+....++.+|.+++..... .+. ..
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~-----------------------~~~~~~r~~a~~~l~~l~~~~~~--~~~---~~ 262 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQ-----------------------AEDIEVQAAAFGCLCKIMSKYYT--FMK---PY 262 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHT-----------------------CSCHHHHHHHHHHHHHHHHHHGG--GCH---HH
T ss_pred HHHHHccChhHHHHHHHHHHHHhc-----------------------CCCHHHHHHHHHHHHHHHHHHHH--HHH---HH
Confidence 200000000 00112222222221 12345566678888888752211 111 11
Q ss_pred hh-hhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhh--------------HHHHHHhhcchhhhhHHH
Q 003365 491 LP-KIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGE--------------HLRREISEVVFTISNIRD 555 (826)
Q Consensus 491 Is-KII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~--------------~LR~eIS~~~f~lsNL~~ 555 (826)
+. .|+.++- ..+.+ ....+...+++++..++......+. .++..+ ..++..|-.
T Consensus 263 l~~~l~~~~~---~~~~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~il~~ll~ 331 (861)
T 2bpt_A 263 MEQALYALTI---ATMKS-----PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI---KDVVPNLLN 331 (861)
T ss_dssp HHHTHHHHHH---HHTTC-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHH---HHHcC-----CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH---HHHHHHHHH
Confidence 22 3333221 11111 1234556788888877765321110 111111 345556666
Q ss_pred HHccC-----CCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcc
Q 003365 556 ILLHG-----EKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKS 630 (826)
Q Consensus 556 IL~~~-----~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~ 630 (826)
.|.+. ......++-|.+.|..|+-.-. +.+ .+.++..+...+ .+ .+-..|..|-.+|..++.....
T Consensus 332 ~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~--~~~l~~~l~~~l-~~----~~~~~r~~a~~~l~~i~~~~~~ 402 (861)
T 2bpt_A 332 LLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHI--LEPVLEFVEQNI-TA----DNWRNREAAVMAFGSIMDGPDK 402 (861)
T ss_dssp HTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGG--HHHHHHHHHHHT-TC----SSHHHHHHHHHHHHHTSSSSCH
T ss_pred HHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhH--HHHHHHHHHHHc-CC----CChhHHHHHHHHHHHHHcCCCH
Confidence 66532 1235788899999998873211 111 233434333322 22 2235788889999988744321
Q ss_pred hHHHHHhh--hhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHH
Q 003365 631 NCHRILKL--KVVDKLVETLAV--PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAA 706 (826)
Q Consensus 631 Nc~~ILke--~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~ 706 (826)
..+... .++..|...+.| +..|..|+..|.++|.+.+++.. .-+.+...+|.+++.+-+. .+..+....-..
T Consensus 403 --~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~ 478 (861)
T 2bpt_A 403 --VQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID-PQQHLPGVVQACLIGLQDH-PKVATNCSWTII 478 (861)
T ss_dssp --HHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC-TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC-CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 122111 567788888877 46788899999999986553210 0112566677777766553 333232222223
Q ss_pred HHhhcCC---chhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCCc
Q 003365 707 QVFRFMT---REESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKAT 769 (826)
Q Consensus 707 qIc~~i~---~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~~ 769 (826)
++|+.+. ++.+...+ ..++..|...++.. .. -+.+|..+++.+-.+.+..+.
T Consensus 479 ~l~~~~~~~~~~~l~~~~-------~~il~~L~~~l~~~---d~-~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 479 NLVEQLAEATPSPIYNFY-------PALVDGLIGAANRI---DN-EFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHSSSSSCGGGGGH-------HHHHHHHHHHHTCS---CC-GGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHhcccccchhhHHHH-------HHHHHHHHHHHhCc---Cc-chHHHHHHHHHHHHHHHHcch
Confidence 3444322 12222211 25677777777632 11 257888888888888877654
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.08 E-value=0.26 Score=48.14 Aligned_cols=191 Identities=15% Similarity=0.139 Sum_probs=118.5
Q ss_pred hccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhc
Q 003365 374 IGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIIL 453 (826)
Q Consensus 374 l~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~ 453 (826)
+..+++++..|++.|. + .+..+|..|++.+.++.. |.++..+..+|..++
T Consensus 14 ~~~~~~~~~~L~~~L~--~-~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~---------------- 63 (211)
T 3ltm_A 14 LRADPEKVEMYIKNLQ--D-DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED---------------- 63 (211)
T ss_dssp --CCGGGHHHHHHHTT--C-SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSC----------------
T ss_pred hhcCHhHHHHHHHHHc--C-CCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCC----------------
Confidence 4457889999999997 2 357999999999999874 577777777776321
Q ss_pred cccccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCcc
Q 003365 454 DHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTG 533 (826)
Q Consensus 454 ~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~G 533 (826)
+......+..|.++. ..+.++.++... .+.+ ..+-..+++.|.++.
T Consensus 64 -------~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l-------~~~~-----~~vr~~a~~aL~~~~---- 109 (211)
T 3ltm_A 64 -------AWVRRAAADALGQIG-----------DERAVEPLIKAL-------KDED-----GWVRQSAAVALGQIG---- 109 (211)
T ss_dssp -------HHHHHHHHHHHHHHC-----------CGGGHHHHHHHT-------TCSS-----HHHHHHHHHHHHHHC----
T ss_pred -------HHHHHHHHHHHHhhC-----------CHHHHHHHHHHH-------cCCC-----HHHHHHHHHHHHHhC----
Confidence 123444555555552 124556666533 1211 123345666665542
Q ss_pred chhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhH
Q 003365 534 ITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCV 613 (826)
Q Consensus 534 e~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~l 613 (826)
++.++.-|.+.|++. ++..+..|+..|.++.- ...+..|.. ++.. .+..+
T Consensus 110 ------------~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~-----------~~~~~~L~~-~l~d----~~~~v 159 (211)
T 3ltm_A 110 ------------DERAVEPLIKALKDE--DWFVRIAAAFALGEIGD-----------ERAVEPLIK-ALKD----EDGWV 159 (211)
T ss_dssp ------------CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC-----------GGGHHHHHH-HTTC----SSHHH
T ss_pred ------------cHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCC-----------HHHHHHHHH-HHcC----CCHHH
Confidence 234566677777554 58999999999999842 123355555 3432 23468
Q ss_pred HHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhcc
Q 003365 614 RIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCASSG 669 (826)
Q Consensus 614 r~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~ 669 (826)
|..|.++|..+.. ...++.|..++.| +..|..|+..|.++..+..
T Consensus 160 r~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 160 RQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 9999999998842 2455666666765 5778899999998876443
No 46
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=95.60 E-value=4.7 Score=47.40 Aligned_cols=370 Identities=10% Similarity=0.039 Sum_probs=190.2
Q ss_pred chhHHHHHhhcCC--CcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh
Q 003365 333 DMVIFGMELLDSN--SPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLA 410 (826)
Q Consensus 333 ~LVtFA~dll~S~--S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA 410 (826)
+|+.+-+..++++ ++.-+..++++|..+...-. .+.+. ...+..+..+++.|.... .+.++|..|.+.+..++
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~--~~~~~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQ--DKSNEILTAIIQGMRKEE-PSNNVKLAATNALLNSL 202 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHG--GGHHHHHHHHHHHHSTTC-SCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHH--hHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHH
Confidence 4666677777777 66667788899998886421 11111 123456777777775432 25789999999999988
Q ss_pred ccCCCceEEecc-cchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccC
Q 003365 411 GKKQNSLRVAGI-PGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRG 489 (826)
Q Consensus 411 ~~~~nsLrv~~i-PGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~g 489 (826)
..-...+.-... +..++.+..++.. .+++.....+..|.+++...... +. .
T Consensus 203 ~~~~~~~~~~~~~~~il~~l~~~~~~-----------------------~~~~vr~~a~~~l~~l~~~~~~~--~~---~ 254 (876)
T 1qgr_A 203 EFTKANFDKESERHFIMQVVCEATQC-----------------------PDTRVRVAALQNLVKIMSLYYQY--ME---T 254 (876)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHTTC-----------------------SSHHHHHHHHHHHHHHHHHSGGG--CH---H
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHcCC-----------------------CCHHHHHHHHHHHHHHHHHhHHH--HH---H
Confidence 520000000000 0123333333321 11234455677777777532111 10 0
Q ss_pred chh-hhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccc------------------hhhHHHHHHhhcchhh
Q 003365 490 LLP-KIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGI------------------TGEHLRREISEVVFTI 550 (826)
Q Consensus 490 LIs-KII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge------------------~G~~LR~eIS~~~f~l 550 (826)
-+. .++.++-. .+.+. ...+...+++++..++....+ .-..++..+ ..++
T Consensus 255 ~~~~~l~~~~~~---~~~~~-----~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ll 323 (876)
T 1qgr_A 255 YMGPALFAITIE---AMKSD-----IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL---QYLV 323 (876)
T ss_dssp HHTTTHHHHHHH---HHTCS-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH---HHHH
T ss_pred HHHHHHHHHHHH---HhcCC-----chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH---HHHh
Confidence 111 33322211 11111 123445677777766643210 000111111 2334
Q ss_pred hhHHHHHccC-----CCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHh
Q 003365 551 SNIRDILLHG-----EKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLA 625 (826)
Q Consensus 551 sNL~~IL~~~-----~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa 625 (826)
..+-..|... ..+...++-|...|..|+-.-. +.+ .+.++..+...+ .+ ..-..|..|-.+|..++
T Consensus 324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~--~~~~l~~l~~~l-~~----~~~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI--VPHVLPFIKEHI-KN----PDWRYRDAAVMAFGCIL 394 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGG--HHHHHHHHHHHT-TC----SSHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--Hhh--HHHHHHHHHHHc-cC----CChHHHHHHHHHHHHHH
Confidence 4455555321 2345788888888888863221 111 234444444432 22 22357888889998887
Q ss_pred ccCc-chHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHH
Q 003365 626 LDSK-SNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMI 702 (826)
Q Consensus 626 ~es~-~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~li 702 (826)
.... ..-...+ ..++..|...|.| +..|..|+..|.++|.+..+... .-..+...+|.+++.+.+. .+..+...
T Consensus 395 ~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-~~~~l~~~l~~l~~~l~~~-~~v~~~a~ 471 (876)
T 1qgr_A 395 EGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI-NDVYLAPLLQCLIEGLSAE-PRVASNVC 471 (876)
T ss_dssp SSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS-STTTHHHHHHHHHHHTTSC-HHHHHHHH
T ss_pred cCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcc-cHHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 5443 2111111 2567788888887 46788999999999987554210 0112566677777766553 33444444
Q ss_pred HhHHHHhhcCC-------------chhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCC
Q 003365 703 GLAAQVFRFMT-------------REESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKA 768 (826)
Q Consensus 703 gLa~qIc~~i~-------------~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~ 768 (826)
..-..+++... ++.+... -..++..|...++.. ..+-+.+|..++|.+-.+.+..+
T Consensus 472 ~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~il~~L~~~l~~~---~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSS-------FELIVQKLLETTDRP---DGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCCCCCCSSTTT-------HHHHHHHHHHHTTSC---SSCSTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhhccccccccccccchhhhHh-------HHHHHHHHHHHHhCc---CcchhhHHHHHHHHHHHHHHHCc
Confidence 43344443211 0112111 125677777776633 22345677778887777777654
No 47
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.55 E-value=0.77 Score=44.36 Aligned_cols=186 Identities=13% Similarity=0.142 Sum_probs=116.5
Q ss_pred ccchhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh
Q 003365 331 KMDMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLA 410 (826)
Q Consensus 331 ~~~LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA 410 (826)
.-+..++.++.|++.++..+...++.|..+- .+..+..|+++|. + .|..+|..|++.+.++.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~---------------~~~~~~~L~~~l~--~-~~~~vr~~a~~~L~~~~ 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG---------------DERAVEPLIKALK--D-EDAWVRRAAADALGQIG 73 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC---------------CGGGHHHHHHHTT--C-SSHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcC---------------ChhHHHHHHHHHc--C-CCHHHHHHHHHHHHhhC
Confidence 4466788888888888887777776665432 2356788888885 2 35789999999999886
Q ss_pred ccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCc
Q 003365 411 GKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGL 490 (826)
Q Consensus 411 ~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gL 490 (826)
. |.++..+..+|+..+ +......+..|.++.. ...
T Consensus 74 ~-----------~~~~~~L~~~l~d~~-----------------------~~vr~~a~~aL~~~~~-----------~~~ 108 (201)
T 3ltj_A 74 D-----------ERAVEPLIKALKDED-----------------------GWVRQSAAVALGQIGD-----------ERA 108 (201)
T ss_dssp C-----------GGGHHHHHHHTTCSS-----------------------HHHHHHHHHHHHHHCC-----------GGG
T ss_pred C-----------HHHHHHHHHHHcCCC-----------------------HHHHHHHHHHHHHhCc-----------HHH
Confidence 4 567777777775321 1233444555555421 235
Q ss_pred hhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHH
Q 003365 491 LPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLG 570 (826)
Q Consensus 491 IsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lA 570 (826)
++.++.... +. ...+-..+.+.|.++. .+.++.-|.+.|++. ++..+..|
T Consensus 109 ~~~L~~~l~-------d~-----~~~vr~~a~~aL~~~~----------------~~~~~~~L~~~l~d~--~~~vr~~A 158 (201)
T 3ltj_A 109 VEPLIKALK-------DE-----DWFVRIAAAFALGEIG----------------DERAVEPLIKALKDE--DGWVRQSA 158 (201)
T ss_dssp HHHHHHHTT-------CS-----SHHHHHHHHHHHHHHT----------------CGGGHHHHHHHTTCS--SHHHHHHH
T ss_pred HHHHHHHHc-------CC-----CHHHHHHHHHHHHHhC----------------CHHHHHHHHHHHcCC--CHHHHHHH
Confidence 566665431 11 1123345666665542 235666777777664 58899999
Q ss_pred HHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHh
Q 003365 571 IDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLA 625 (826)
Q Consensus 571 i~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa 625 (826)
++.|.++. .+..+..|.... .. .+..+|..|.++|..+.
T Consensus 159 ~~aL~~~~-----------~~~~~~~L~~~l-~d----~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 159 ADALGEIG-----------GERVRAAMEKLA-ET----GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHC-----------SHHHHHHHHHHH-HH----CCHHHHHHHHHHHHHCC
T ss_pred HHHHHHhC-----------chhHHHHHHHHH-hC----CCHHHHHHHHHHHHHHH
Confidence 99999882 123345555533 22 22458888999998763
No 48
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.52 E-value=0.66 Score=50.02 Aligned_cols=350 Identities=13% Similarity=0.070 Sum_probs=185.3
Q ss_pred cchhhhhhHHHHHHhhCcCCchHH-H----HHhccC--HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEE
Q 003365 347 PDEQLIGARILRQFAMSKRFSDDT-L----QKIGIN--LSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRV 419 (826)
Q Consensus 347 ~~~qL~GvriL~~~l~~~~~~~~~-L----~kl~tS--~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv 419 (826)
+.-+..++..|.+++.+....... . .++... ...-+.|++.|.-.+ ..+ ..++.+++.+|... .--
T Consensus 51 ~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~---~~v-~~~~~~i~~ia~~~---~~~ 123 (462)
T 1ibr_B 51 QVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET---YRP-SSASQCVAGIACAE---IPV 123 (462)
T ss_dssp HHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC---SSS-CSHHHHHHHHHHHH---GGG
T ss_pred hHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC---chh-hHHHHHHHHHHHHh---ccc
Confidence 444667778888888765322110 1 122111 234456788876433 345 78999999999741 111
Q ss_pred ecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccc
Q 003365 420 AGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTH 499 (826)
Q Consensus 420 ~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~ 499 (826)
...|..++.+...+..+. .++.....++.+|.++..+-..-.--.....+++.++...
T Consensus 124 ~~w~~ll~~L~~~l~~~~---------------------~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l- 181 (462)
T 1ibr_B 124 NQWPELIPQLVANVTNPN---------------------STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM- 181 (462)
T ss_dssp TCCTTHHHHHHHHHHCTT---------------------CCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHhccCC---------------------CCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHh-
Confidence 245777776666665431 0113456789999999865311000001113444444322
Q ss_pred cchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccC
Q 003365 500 AEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLAL 579 (826)
Q Consensus 500 ~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~ 579 (826)
.++. ....+-..+++.+..++....+ ....+. ...+++..+.+.+.+ .+++.++.+.++|..++-
T Consensus 182 ------~~~~---~~~~vr~~a~~~l~~~~~~~~~---~~~~~~-~~~~l~~~l~~~~~~--~~~~vr~~~~~~l~~l~~ 246 (462)
T 1ibr_B 182 ------RKEE---PSNNVKLAATNALLNSLEFTKA---NFDKES-ERHFIMQVVCEATQC--PDTRVRVAALQNLVKIMS 246 (462)
T ss_dssp ------STTC---CCHHHHHHHHHHHHHHTTTTHH---HHTSHH-HHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHH
T ss_pred ------CCCC---CCHHHHHHHHHHHHHHHHHHHH---hhhhhH-HHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHH
Confidence 2210 0122334677777776533111 110000 012344444444433 458899999999999874
Q ss_pred Ccccccccc-chh-hHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCc-----------------chHHHHHh---
Q 003365 580 EEDATERIG-GTG-GMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSK-----------------SNCHRILK--- 637 (826)
Q Consensus 580 D~~~re~Ig-~~~-~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~-----------------~Nc~~ILk--- 637 (826)
... +.+. ..+ .++..++..+-+ ..+.++..|-+.+..++.... .-+..+.+
T Consensus 247 ~~~--~~~~~~~~~~l~~~~~~~~~~-----~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (462)
T 1ibr_B 247 LYY--QYMETYMGPALFAITIEAMKS-----DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL 319 (462)
T ss_dssp HCG--GGCTTTTTTTHHHHHHHHHHC-----SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHcC-----CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh
Confidence 322 1121 123 566665554422 234577888888877764310 01111222
Q ss_pred hhhHHHHHHhhcc---------chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHH
Q 003365 638 LKVVDKLVETLAV---------PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQV 708 (826)
Q Consensus 638 e~vi~~Lv~mL~d---------~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qI 708 (826)
...+..|...+.+ ...|..|+..|..||.+.+++. +...+|.+.+.+-+.+-+..++.+-.-.+|
T Consensus 320 ~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~------~~~~~~~l~~~l~~~~~~~r~aal~~l~~l 393 (462)
T 1ibr_B 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI------VPHVLPFIKEHIKNPDWRYRDAAVMAFGCI 393 (462)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHH------HHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 1445555555532 2578899999999998655322 344555555555555556666666555666
Q ss_pred hhcCCchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhc
Q 003365 709 FRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRD 766 (826)
Q Consensus 709 c~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~ 766 (826)
++-..++.+.. .+. .++.-|...|+. | .|.+|..++..+-.+.+.
T Consensus 394 ~~~~~~~~~~~-----~l~--~~~~~l~~~l~d---~---~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 394 LEGPEPSQLKP-----LVI--QAMPTLIELMKD---P---SVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp SSSSCTTTTCT-----TTT--THHHHHHHGGGC---S---CHHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHH-----HHH--HHHHHHHHHhcC---C---CHHHHHHHHHHHHHHHHh
Confidence 65333322211 122 466666666652 2 488998888876666654
No 49
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.39 E-value=0.57 Score=52.31 Aligned_cols=263 Identities=14% Similarity=0.153 Sum_probs=135.4
Q ss_pred hHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCC
Q 003365 335 VIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQ 414 (826)
Q Consensus 335 VtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~ 414 (826)
+...++.+.|+.++.....++.|..+...... .+. -...+..|.+.+ ..+.++|..|++.+.+++..-.
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~-~~~------~~~l~~~L~~~~----d~~~~vr~~~~~~L~~~~~~~~ 80 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGV-ERT------RSELLPFLTDTI----YDEDEVLLALAEQLGTFTTLVG 80 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCH-HHH------HHTHHHHHHHTC----CCCHHHHHHHHHHHTTCSGGGT
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCH-HHH------HHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHhccC
Confidence 44555666666666666666666655432110 000 012344444332 2456899999999988775311
Q ss_pred CceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhh
Q 003365 415 NSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKI 494 (826)
Q Consensus 415 nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKI 494 (826)
+. ...+..+..+..++..+ ...........|.+++.+...- .+ ..-+++.+
T Consensus 81 ~~---~~~~~ll~~L~~l~~~~-----------------------~~~vR~~a~~~L~~l~~~~~~~-~~--~~~l~~~l 131 (588)
T 1b3u_A 81 GP---EYVHCLLPPLESLATVE-----------------------ETVVRDKAVESLRAISHEHSPS-DL--EAHFVPLV 131 (588)
T ss_dssp SG---GGGGGGHHHHHHHTTSS-----------------------CHHHHHHHHHHHHHHHTTSCHH-HH--HHTHHHHH
T ss_pred cH---HHHHHHHHHHHHHHhCc-----------------------hHHHHHHHHHHHHHHHHHCCHH-HH--HHHHHHHH
Confidence 10 01122333333332211 0122344566777776532110 00 01123333
Q ss_pred hcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHH
Q 003365 495 IDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDIL 574 (826)
Q Consensus 495 I~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~IL 574 (826)
..+. +++ +...=..+.+++..++...+. ..+. .++.-+...++| .+++.+..|++.|
T Consensus 132 ~~l~-------~~~-----~~~~R~~a~~~l~~~~~~~~~---~~~~------~l~~~l~~l~~d--~~~~VR~~a~~~l 188 (588)
T 1b3u_A 132 KRLA-------GGD-----WFTSRTSACGLFSVCYPRVSS---AVKA------ELRQYFRNLCSD--DTPMVRRAAASKL 188 (588)
T ss_dssp HHHH-------TCS-----SHHHHHHHGGGHHHHTTTSCH---HHHH------HHHHHHHHHHTC--SCHHHHHHHHHHH
T ss_pred HHHh-------cCC-----CcHHHHHHHHHHHHHHHhcCH---HHHH------HHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 2221 111 122224567777777665442 2222 234444455554 3589999999999
Q ss_pred HhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhccc--h
Q 003365 575 TSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVP--L 652 (826)
Q Consensus 575 t~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d~--~ 652 (826)
..++-.-... . ....++..|+. ++.. ++..+|..|.++|..++...... -..+.++..+..++.|+ .
T Consensus 189 ~~l~~~~~~~-~--~~~~l~~~l~~-~~~d----~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~ 257 (588)
T 1b3u_A 189 GEFAKVLELD-N--VKSEIIPMFSN-LASD----EQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWR 257 (588)
T ss_dssp HHHHHTSCHH-H--HHHTHHHHHHH-HHTC----SCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHH
T ss_pred HHHHHHhcHH-h--HHHHHHHHHHH-HhcC----CcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHH
Confidence 9996321110 0 01334454444 3322 23568889999999887543321 11224566666777763 6
Q ss_pred hHHHHHHHHHHHhhhcccc
Q 003365 653 VRVNAARILRNLCASSGAD 671 (826)
Q Consensus 653 ~r~~AA~IL~nLC~~s~~e 671 (826)
.|..|+..|.+++...+++
T Consensus 258 vR~~a~~~l~~l~~~~~~~ 276 (588)
T 1b3u_A 258 VRYMVADKFTELQKAVGPE 276 (588)
T ss_dssp HHHHHHHTHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 7999999999999865543
No 50
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.18 E-value=0.73 Score=46.99 Aligned_cols=197 Identities=11% Similarity=0.044 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhcccc
Q 003365 377 NLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHA 456 (826)
Q Consensus 377 S~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~ 456 (826)
++..+..|+++|.- .+..+|..|+..+..+.... ..+|..++.+.+.+..+.
T Consensus 52 ~~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~------~~~~~l~~~L~~~~~~d~------------------- 103 (280)
T 1oyz_A 52 GQDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICK------KCEDNVFNILNNMALNDK------------------- 103 (280)
T ss_dssp CHHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCT------TTHHHHHHHHHHHHHHCS-------------------
T ss_pred CchHHHHHHHHHcC---CCHHHHHHHHHHHHHhcccc------ccchHHHHHHHHHHhcCC-------------------
Confidence 56788899998862 35689999999998887421 112333333322111111
Q ss_pred ccCcchhhhhHHHHHHHHhh-ccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccch
Q 003365 457 NYGFWTFNHLGLLILKKLAR-NHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGIT 535 (826)
Q Consensus 457 ~~~~~~L~~~GL~IL~kLA~-D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~ 535 (826)
++.........|.++.. ++.. ...+++.++... .+.+ ..+-..+...|.++
T Consensus 104 ---~~~vr~~a~~aL~~l~~~~~~~------~~~~~~~L~~~l-------~d~~-----~~vR~~a~~aL~~~------- 155 (280)
T 1oyz_A 104 ---SACVRATAIESTAQRCKKNPIY------SPKIVEQSQITA-------FDKS-----TNVRRATAFAISVI------- 155 (280)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCGGG------HHHHHHHHHHHT-------TCSC-----HHHHHHHHHHHHTC-------
T ss_pred ---CHHHHHHHHHHHHHHhccCCcc------cHHHHHHHHHHh-------hCCC-----HHHHHHHHHHHHhc-------
Confidence 12334445556666643 2110 113444444322 1211 11223444444332
Q ss_pred hhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHH
Q 003365 536 GEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRI 615 (826)
Q Consensus 536 G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~ 615 (826)
| ++.++.-|.+.|++. ++..+..|+..|.++..+. +.++..|+..+ .. .+..+|.
T Consensus 156 ~---------~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l-~d----~~~~vR~ 210 (280)
T 1oyz_A 156 N---------DKATIPLLINLLKDP--NGDVRNWAAFAININKYDN---------SDIRDCFVEML-QD----KNEEVRI 210 (280)
T ss_dssp ------------CCHHHHHHHHTCS--SHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHT-TC----SCHHHHH
T ss_pred C---------CHHHHHHHHHHHcCC--CHHHHHHHHHHHHhhccCc---------HHHHHHHHHHh-cC----CCHHHHH
Confidence 2 134667777777764 4789999999998874221 24556666644 22 2345888
Q ss_pred HHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhccchhHHHHHHHHHHHh
Q 003365 616 AAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVPLVRVNAARILRNLC 665 (826)
Q Consensus 616 ~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d~~~r~~AA~IL~nLC 665 (826)
.|.++|..+.. +..++.|...|.|+..|..|+.-|.++.
T Consensus 211 ~A~~aL~~~~~-----------~~~~~~L~~~l~d~~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 211 EAIIGLSYRKD-----------KRVLSVLCDELKKNTVYDDIIEAAGELG 249 (280)
T ss_dssp HHHHHHHHTTC-----------GGGHHHHHHHHTSSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHhCC-----------HhhHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 89999988752 2567888888888888888888887763
No 51
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.06 E-value=0.072 Score=62.67 Aligned_cols=252 Identities=18% Similarity=0.212 Sum_probs=156.1
Q ss_pred cCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhh---h--
Q 003365 376 INLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEK---K-- 450 (826)
Q Consensus 376 tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~---~-- 450 (826)
+-.+||++|++-|.-..- -|=|+.|.+-+..++++ -|.+=-.+++..+-..|..+.+. .| .-.. .
T Consensus 18 s~~etI~~L~~Rl~~~tl--~eDRR~Av~~Lk~~sk~----y~~~Vg~~~l~~li~~L~~d~~D---~e-~v~~~LetL~ 87 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTL--LDDRRNAVRALKSLSKK----YRLEVGIQAMEHLIHVLQTDRSD---SE-IIGYALDTLY 87 (651)
T ss_dssp CHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHTTTT----TTTHHHHHTHHHHHHHHHSCTTC---HH-HHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHH----hHHHhhhhhHHHHHHHHhccccc---HH-HHHHHHHHHH
Confidence 345899999999854332 35688899999999975 33322235677777777766431 00 0000 0
Q ss_pred --hhcccccc----CcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHH
Q 003365 451 --IILDHANY----GFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQL 524 (826)
Q Consensus 451 --~~~~~~~~----~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkv 524 (826)
..+++... ..-.-...|+.+-+.+..++ +-|+.++++... + +.+ +--.++|+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~----------~~i~~Ll~lL~~--------~--df~--vR~~alql 145 (651)
T 3grl_A 88 NIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQ----------ENVTLLLSLLEE--------F--DFH--VRWPGVKL 145 (651)
T ss_dssp HHHCCC--------------CHHHHHHHHHHHST----------HHHHHHHHHTTC--------C--CHH--HHHHHHHH
T ss_pred HHhCCCCcccccccccccchHHHHHHHHHHHcCC----------ccHHHHHHHhcC--------c--cHH--HHHHHHHH
Confidence 00000000 00000112333333333332 335555654421 1 122 23578999
Q ss_pred HHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcC
Q 003365 525 VKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKE 604 (826)
Q Consensus 525 L~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~ 604 (826)
|..|..+ -+...+.-|...|-.++.|.++|.+.. ..+|--|+..|.+|.-+...-|+|-.-++.+.+|++++-.+
T Consensus 146 L~~L~~~---r~~~~Q~~Il~~p~gi~~Lv~lL~d~r--E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E 220 (651)
T 3grl_A 146 LTSLLKQ---LGPQVQQIILVSPMGVSRLMDLLADSR--EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEE 220 (651)
T ss_dssp HHHHHHH---SHHHHHHHHHHSTTHHHHHHGGGGCSS--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHhc---CcHHHHHHHHhCcccHHHHHHHHhCch--HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhc
Confidence 9998877 345578889999999999999999875 78999999999999988888888888888889999998776
Q ss_pred CCCCchhhHHHHHHHHHHHHhccCcchHHHHHhh-hhHHHHHHhhccc-----------hhHHHHHHHHHHHhh
Q 003365 605 GMPENQNCVRIAAGEALAMLALDSKSNCHRILKL-KVVDKLVETLAVP-----------LVRVNAARILRNLCA 666 (826)
Q Consensus 605 ~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke-~vi~~Lv~mL~d~-----------~~r~~AA~IL~nLC~ 666 (826)
++. +...+-.-.-..|..|...+.+|=. .++| +.+++|..+|..+ .-.+.+=.|.+-||.
T Consensus 221 g~~-~Ggivv~DCL~ll~nLLr~N~sNQ~-~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~ 292 (651)
T 3grl_A 221 GNS-DGGIVVEDCLILLQNLLKNNNSNQN-FFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVS 292 (651)
T ss_dssp TGG-GSHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCC-ccchhHHHHHHHHHHHHhcCHHHHH-HHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhC
Confidence 521 1112222344558888888888844 4566 8888888887632 112235567777776
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.87 E-value=2.1 Score=41.28 Aligned_cols=184 Identities=15% Similarity=0.128 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhcccc
Q 003365 377 NLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHA 456 (826)
Q Consensus 377 S~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~ 456 (826)
.+.....+|++|+-. |.++|..|++.+.++.. |.++..+..+|..++
T Consensus 12 ~~~~~~~~i~~L~~~---~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~------------------- 58 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDD---SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED------------------- 58 (201)
T ss_dssp CHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS-------------------
T ss_pred CCcchHHHHHHhcCC---CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCC-------------------
Confidence 467888999999744 47899999999999875 467777777775321
Q ss_pred ccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchh
Q 003365 457 NYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITG 536 (826)
Q Consensus 457 ~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G 536 (826)
+......+..|.++.. ...++.++... .+.+ ..+-..+++.|.++.
T Consensus 59 ----~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l-------~d~~-----~~vr~~a~~aL~~~~------- 104 (201)
T 3ltj_A 59 ----AWVRRAAADALGQIGD-----------ERAVEPLIKAL-------KDED-----GWVRQSAAVALGQIG------- 104 (201)
T ss_dssp ----HHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-------TCSS-----HHHHHHHHHHHHHHC-------
T ss_pred ----HHHHHHHHHHHHhhCC-----------HHHHHHHHHHH-------cCCC-----HHHHHHHHHHHHHhC-------
Confidence 1233445555555421 13456666433 2211 122345666665542
Q ss_pred hHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHH
Q 003365 537 EHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIA 616 (826)
Q Consensus 537 ~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~ 616 (826)
++.++.-|.+.|.+. ++..+..|+..|.++.- ...+..|.. ++.. .+..+|..
T Consensus 105 ---------~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~-----------~~~~~~L~~-~l~d----~~~~vr~~ 157 (201)
T 3ltj_A 105 ---------DERAVEPLIKALKDE--DWFVRIAAAFALGEIGD-----------ERAVEPLIK-ALKD----EDGWVRQS 157 (201)
T ss_dssp ---------CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHTC-----------GGGHHHHHH-HTTC----SSHHHHHH
T ss_pred ---------cHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC-----------HHHHHHHHH-HHcC----CCHHHHHH
Confidence 234566677777654 58999999999998842 123455555 3332 23458889
Q ss_pred HHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHh
Q 003365 617 AGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLC 665 (826)
Q Consensus 617 AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC 665 (826)
|.+||..+.. +..+..|..++.| +..|..|+..|.++-
T Consensus 158 A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 158 AADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 9999998832 2456666667765 467888888887763
No 53
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.06 E-value=2.5 Score=42.40 Aligned_cols=194 Identities=12% Similarity=0.180 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhhC-ccchhhHHHHHHhhcchhhhhHHHHHc-cCCCChHHHHHHHHHHHhccCCccccccccc-hhhHHH
Q 003365 519 RRSLQLVKMLAST-TGITGEHLRREISEVVFTISNIRDILL-HGEKHPLLQKLGIDILTSLALEEDATERIGG-TGGMLK 595 (826)
Q Consensus 519 ~~SLkvL~rLas~-~Ge~G~~LR~eIS~~~f~lsNL~~IL~-~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~-~~~iI~ 595 (826)
+.++.-|..++.. ++-.. .....++..|...|. + .+...+..|...|..||-. .+..+.. .+.++.
T Consensus 33 ~~a~~~L~~l~~~~~~~~~-------~~~~~i~~~L~~~l~kd--~~~~V~~~a~~~l~~la~~--l~~~~~~~~~~ilp 101 (242)
T 2qk2_A 33 KESLEVLEKLLTDHPKLEN-------GEYGALVSALKKVITKD--SNVVLVAMAGKCLALLAKG--LAKRFSNYASACVP 101 (242)
T ss_dssp HHHHHHHHHHHHHCSSBCC-------CCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHHH--HGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCC-------CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHH
Confidence 4677778888765 32111 112244666777774 5 4588999999999999832 2222211 234555
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccc-h
Q 003365 596 ELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCASSGAD-C 672 (826)
Q Consensus 596 ~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e-~ 672 (826)
.|+..|-+ .+..+|..|.+||..+.... +- ..+++.|...|.+ +..|..+...|..+..+++++ .
T Consensus 102 ~ll~~l~d-----~~~~vr~~a~~aL~~~~~~~--~~-----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 102 SLLEKFKE-----KKPNVVTALREAIDAIYAST--SL-----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHGGGC-----CCHHHHHHHHHHHHHHHTTS--CH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHcC-----CCHHHHHHHHHHHHHHHHcC--CH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 55554422 23468889999998875422 11 2457777788876 577889999999976654433 2
Q ss_pred hhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHh
Q 003365 673 FNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILR 740 (826)
Q Consensus 673 ~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~ 740 (826)
. ...+...+|.+.+.+-+...+.-++.+.-...|++.+..+.|...+.. ++. .-.+|+++..+
T Consensus 170 ~--~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~--L~~-~~~~~i~~~~~ 232 (242)
T 2qk2_A 170 N--KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD--VDP-LKMAKIKECQE 232 (242)
T ss_dssp C--HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT--SCH-HHHHHHHHHHH
T ss_pred c--HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh--cCH-HHHHHHHHHHH
Confidence 1 223666777777777677777777777777777777655557666653 443 45566666555
No 54
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=93.96 E-value=2.8 Score=46.70 Aligned_cols=268 Identities=13% Similarity=0.142 Sum_probs=141.6
Q ss_pred hhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccC
Q 003365 334 MVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKK 413 (826)
Q Consensus 334 LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~ 413 (826)
++.+-..+++.+++.-+...++.|..|...-... .. .+..+..|.++++ ..+..+|..|++.+..++..-
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~-~~------~~~l~~~l~~~~~---d~~~~vr~~a~~~l~~l~~~~ 234 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD-NV------KSEIIPMFSNLAS---DEQDSVRLLAVEACVNIAQLL 234 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH-HH------HHTHHHHHHHHHT---CSCHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH-hH------HHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHhC
Confidence 4444445555556666777777777777532210 00 1234555555553 335689999999999888631
Q ss_pred CCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhh
Q 003365 414 QNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPK 493 (826)
Q Consensus 414 ~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsK 493 (826)
.... ..|..+..+..+++. ..|.........|..++...+. +. -...+++.
T Consensus 235 ~~~~---~~~~~~~~l~~~~~d-----------------------~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~~~ 285 (588)
T 1b3u_A 235 PQED---LEALVMPTLRQAAED-----------------------KSWRVRYMVADKFTELQKAVGP--EI-TKTDLVPA 285 (588)
T ss_dssp CHHH---HHHHTHHHHHHHHTC-----------------------SSHHHHHHHHHTHHHHHHHHCH--HH-HHHTHHHH
T ss_pred CHHH---HHHHHHHHHHHHccC-----------------------CCHHHHHHHHHHHHHHHHHhCc--cc-chhHHHHH
Confidence 0000 011233333333321 1344444555566666542110 00 01234555
Q ss_pred hhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHH
Q 003365 494 IIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDI 573 (826)
Q Consensus 494 II~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~I 573 (826)
++.+. .+++ ..+-..+.+.+.+++...|.... . -.-.+.++..+...+++. ++..++.|+..
T Consensus 286 l~~~l-------~d~~-----~~vr~~a~~~l~~~~~~~~~~~~---~-~~~~~~l~p~l~~~l~d~--~~~vR~~a~~~ 347 (588)
T 1b3u_A 286 FQNLM-------KDCE-----AEVRAAASHKVKEFCENLSADCR---E-NVIMSQILPCIKELVSDA--NQHVKSALASV 347 (588)
T ss_dssp HHHHH-------TCSS-----HHHHHHHHHHHHHHHHTSCTTTH---H-HHHHHTHHHHHHHHHTCS--CHHHHHHHHTT
T ss_pred HHHHh-------CCCc-----HHHHHHHHHHHHHHHHHhChhhh---h-hHHHHHHHHHHHHHhcCC--CHHHHHHHHHH
Confidence 54432 2211 12234567777787776554211 0 011235666777777664 47899999999
Q ss_pred HHhccC--CccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhccc
Q 003365 574 LTSLAL--EEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAVP 651 (826)
Q Consensus 574 Lt~LA~--D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d~ 651 (826)
|..++- .++. ..+.++..|...+ .. ....+|..|-++|..+........ +...++..|...+.|+
T Consensus 348 l~~l~~~~~~~~-----~~~~l~p~l~~~l-~d----~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~~~d~ 414 (588)
T 1b3u_A 348 IMGLSPILGKDN-----TIEHLLPLFLAQL-KD----ECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVELAEDA 414 (588)
T ss_dssp GGGGHHHHCHHH-----HHHHTHHHHHHHH-TC----SCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhhHhH-----HHHHHHHHHHHHh-CC----CchHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHhcCC
Confidence 988862 1110 0123334444433 22 234588888888887764332221 1225667777777774
Q ss_pred --hhHHHHHHHHHHHhhhcccc
Q 003365 652 --LVRVNAARILRNLCASSGAD 671 (826)
Q Consensus 652 --~~r~~AA~IL~nLC~~s~~e 671 (826)
+.|..++..|..++...+++
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~~ 436 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGVE 436 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGG
T ss_pred CchHHHHHHHHHHHHHHHcCHH
Confidence 45678888899988755544
No 55
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=93.90 E-value=5.7 Score=49.39 Aligned_cols=230 Identities=13% Similarity=0.150 Sum_probs=125.4
Q ss_pred chhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc
Q 003365 333 DMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGK 412 (826)
Q Consensus 333 ~LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~ 412 (826)
.++....+.+.+.+++-+..++..|..+...-. ...+ ...++.|++.|. ++ +..+|..|+..++.++..
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~--~~~~------~~i~~~Ll~~l~--d~-~~~vR~~a~~~L~~i~~~ 116 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK--EYQV------ETIVDTLCTNML--SD-KEQLRDISSIGLKTVIGE 116 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC--HHHH------HHHHHHHHHHTT--CS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC--HHHH------HHHHHHHHHHhc--CC-cHHHHHHHHHHHHHHHHh
Confidence 456667777776677777788888888775321 1111 245666676654 33 347899999999999864
Q ss_pred CCCceEEe---------cccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccc
Q 003365 413 KQNSLRVA---------GIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGK 483 (826)
Q Consensus 413 ~~nsLrv~---------~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~ 483 (826)
+--. ..|..+..+-..++. ...+.....++.+|.+++.+... .
T Consensus 117 ----l~~~~~~~~~~~~~~~~llp~L~~~l~~----------------------~~~~~~~~~al~~l~~~~~~~~~--~ 168 (1230)
T 1u6g_C 117 ----LPPASSGSALAANVCKKITGRLTSAIAK----------------------QEDVSVQLEALDIMADMLSRQGG--L 168 (1230)
T ss_dssp ----CC-----CCTHHHHHHHHHHHHHHHHSC----------------------CSCHHHHHHHHHHHHHHHHHTCS--S
T ss_pred ----CCCcccccchHHHHHHHHHHHHHHHHcC----------------------CCchHHHHHHHHHHHHHHHHhHh--H
Confidence 2111 112222222222221 11234567788889888753221 1
Q ss_pred ccc-ccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCC
Q 003365 484 IGN-TRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEK 562 (826)
Q Consensus 484 I~~-t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~ 562 (826)
+.. -..+++.++.. +.+. +. .+=+.+++.+..++...++. . -+..+..|...|.+...
T Consensus 169 l~~~~~~ll~~l~~~-------L~~~---~~--~vR~~a~~al~~l~~~~~~~-------~--~~~~l~~l~~~L~~~~~ 227 (1230)
T 1u6g_C 169 LVNFHPSILTCLLPQ-------LTSP---RL--AVRKRTIIALGHLVMSCGNI-------V--FVDLIEHLLSELSKNDS 227 (1230)
T ss_dssp CTTTHHHHHHHHGGG-------GGCS---SH--HHHHHHHHHHHHHTTTC-------------CTTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHH-------HcCC---cH--HHHHHHHHHHHHHHHhcCHH-------H--HHHHHHHHHHHhccCCc
Confidence 110 11233333322 2221 11 23356788888888765431 1 23456667777765422
Q ss_pred ChHHHHHHHHHHHhccCCcccccccc-chhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcc
Q 003365 563 HPLLQKLGIDILTSLALEEDATERIG-GTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKS 630 (826)
Q Consensus 563 ~~eLq~lAi~ILt~LA~D~~~re~Ig-~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~ 630 (826)
...+..|++.+..++-.-. ..++ ....++..++..+-+ +++.+|..|-+++..++...+.
T Consensus 228 -~~~r~~a~~~l~~l~~~~~--~~~~~~l~~l~~~ll~~l~d-----~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 228 -MSTTRTYIQCIAAISRQAG--HRIGEYLEKIIPLVVKFCNV-----DDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp -SCSCTTHHHHHHHHHHHSS--GGGTTSCTTHHHHHHHHHSS-----CCTTTHHHHHHHHHHHHHCTTC
T ss_pred -hhHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHChH
Confidence 4566778888887763211 1222 235677777775532 2344788888888887765443
No 56
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.74 E-value=2.9 Score=40.59 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccc
Q 003365 378 LSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHAN 457 (826)
Q Consensus 378 ~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~ 457 (826)
+..+..|+++|. + .|.++|..|++.+.++.. |.++..+..+|...+
T Consensus 49 ~~~~~~L~~~l~--~-~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~-------------------- 94 (211)
T 3ltm_A 49 ERAVEPLIKALK--D-EDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDED-------------------- 94 (211)
T ss_dssp GGGHHHHHHHTT--C-SCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS--------------------
T ss_pred ccHHHHHHHHHc--C-CCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCC--------------------
Confidence 567888899886 2 367999999999999874 567777777775321
Q ss_pred cCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhh
Q 003365 458 YGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGE 537 (826)
Q Consensus 458 ~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~ 537 (826)
+......+..|.++.. ...++.++.+.. +.+ ..+-..+++.|.++.
T Consensus 95 ---~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~-------d~~-----~~vr~~a~~aL~~~~-------- 140 (211)
T 3ltm_A 95 ---GWVRQSAAVALGQIGD-----------ERAVEPLIKALK-------DED-----WFVRIAAAFALGEIG-------- 140 (211)
T ss_dssp ---HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT-------CSS-----HHHHHHHHHHHHHHC--------
T ss_pred ---HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHh-------CCC-----HHHHHHHHHHHHHcC--------
Confidence 1234445555555521 245666665442 111 123345666665552
Q ss_pred HHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 003365 538 HLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAA 617 (826)
Q Consensus 538 ~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~A 617 (826)
++..+.-|.+.|++. ++..+..|++.|.++.- +..+..|.... .. .+..+|..|
T Consensus 141 --------~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d----~~~~vr~~A 194 (211)
T 3ltm_A 141 --------DERAVEPLIKALKDE--DGWVRQSAADALGEIGG-----------ERVRAAMEKLA-ET----GTGFARKVA 194 (211)
T ss_dssp --------CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHH-HH----CCHHHHHHH
T ss_pred --------CHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHH-hC----CCHHHHHHH
Confidence 234666777777654 48999999999998831 23445555533 22 224589999
Q ss_pred HHHHHHHhcc
Q 003365 618 GEALAMLALD 627 (826)
Q Consensus 618 GeALamLa~e 627 (826)
.++|..+...
T Consensus 195 ~~aL~~~~~~ 204 (211)
T 3ltm_A 195 VNYLETHKSF 204 (211)
T ss_dssp HHHHHC----
T ss_pred HHHHHhcCCC
Confidence 9999887544
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.32 E-value=1.5 Score=47.13 Aligned_cols=288 Identities=12% Similarity=0.067 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhcccc
Q 003365 377 NLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHA 456 (826)
Q Consensus 377 S~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~ 456 (826)
-++.+..|++.+.-.+ .+..+|..|..++..++.+-....--..+|..++.+..+|.....
T Consensus 126 w~~ll~~L~~~l~~~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~------------------ 186 (462)
T 1ibr_B 126 WPELIPQLVANVTNPN-STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP------------------ 186 (462)
T ss_dssp CTTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCC------------------
T ss_pred cHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCC------------------
Confidence 3567888888885321 157899999999999997411111111123444555555543210
Q ss_pred ccCcchhhhhHHHHHHHHhhc-cccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccch
Q 003365 457 NYGFWTFNHLGLLILKKLARN-HDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGIT 535 (826)
Q Consensus 457 ~~~~~~L~~~GL~IL~kLA~D-~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~ 535 (826)
..+.....+..|..+..- .++...-....-+++.+.. .+.+. ...+-+.+++++..++...++
T Consensus 187 ---~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~-----~~~vr~~~~~~l~~l~~~~~~- 250 (462)
T 1ibr_B 187 ---SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE-------ATQCP-----DTRVRVAALQNLVKIMSLYYQ- 250 (462)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH-------HTTCS-----SHHHHHHHHHHHHHHHHHCGG-
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-------hcCCC-----CHHHHHHHHHHHHHHHHHHHH-
Confidence 012233444555544320 0010000000012222221 11111 123445678888888766432
Q ss_pred hhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCc------------c------cccccc--chhhHHH
Q 003365 536 GEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEE------------D------ATERIG--GTGGMLK 595 (826)
Q Consensus 536 G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~------------~------~re~Ig--~~~~iI~ 595 (826)
.++.-+.. .++.-+...+++ .+++.+..|++.+..++-.. + ....+. ..+.++.
T Consensus 251 --~~~~~~~~--~l~~~~~~~~~~--~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 324 (462)
T 1ibr_B 251 --YMETYMGP--ALFAITIEAMKS--DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (462)
T ss_dssp --GCTTTTTT--THHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHH
T ss_pred --HHHHHHHH--HHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccH
Confidence 22211110 222222233333 35788999999888875221 0 000010 0134555
Q ss_pred HHHHHHhcCCC--CCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccc
Q 003365 596 ELFNILFKEGM--PENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCASSGAD 671 (826)
Q Consensus 596 ~L~~iFl~~~~--~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e 671 (826)
.|+..+...+. .+++...|..|+.+|..|+......+ + ..++..+...|.+ .+.|..|...|..++....++
T Consensus 325 ~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~---~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~ 400 (462)
T 1ibr_B 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (462)
T ss_dssp HHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHH---H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH
Confidence 55555443321 11223688999999999976544322 2 1456666677776 467889999999999743322
Q ss_pred hhhhhh-hHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcC
Q 003365 672 CFNQLR-GVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFM 712 (826)
Q Consensus 672 ~~~~Lk-~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i 712 (826)
. ++ .+...+|.+++.+-+.+.+.-.+..-...++|+.+
T Consensus 401 ~---~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 401 Q---LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp T---TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred H---HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 2 22 25667788887777777766666666666777654
No 58
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=93.13 E-value=1.4 Score=44.76 Aligned_cols=196 Identities=15% Similarity=0.125 Sum_probs=117.8
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhcccccc
Q 003365 379 SVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANY 458 (826)
Q Consensus 379 ~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~ 458 (826)
.+++.|++.|.- .+..+|..|++.+.++.. |+++..+..+|+.++
T Consensus 23 ~~i~~L~~~L~~---~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~--------------------- 67 (280)
T 1oyz_A 23 LNDDELFRLLDD---HNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN--------------------- 67 (280)
T ss_dssp SCHHHHHHHTTC---SSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS---------------------
T ss_pred hhHHHHHHHHHc---CCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCC---------------------
Confidence 568899999863 357899999999999874 678888888776431
Q ss_pred CcchhhhhHHHHHHHHhhccccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhH
Q 003365 459 GFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEH 538 (826)
Q Consensus 459 ~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~ 538 (826)
+.....+...|.++..+.. -++.++.+.. ..++++.+ ..+-..+.+.|.++......
T Consensus 68 --~~vR~~A~~aL~~l~~~~~----------~~~~l~~~L~--~~~~~d~~-----~~vr~~a~~aL~~l~~~~~~---- 124 (280)
T 1oyz_A 68 --YIRRDIGAFILGQIKICKK----------CEDNVFNILN--NMALNDKS-----ACVRATAIESTAQRCKKNPI---- 124 (280)
T ss_dssp --HHHHHHHHHHHHHSCCCTT----------THHHHHHHHH--HHHHHCSC-----HHHHHHHHHHHHHHHHHCGG----
T ss_pred --HHHHHHHHHHHHHhccccc----------cchHHHHHHH--HHHhcCCC-----HHHHHHHHHHHHHHhccCCc----
Confidence 1224445566666543211 1233332210 01112211 12234566666655421110
Q ss_pred HHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 003365 539 LRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAG 618 (826)
Q Consensus 539 LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AG 618 (826)
..+.++.-|...|++. ++..+..|+..|.++.-+ ..+..|+..+ .. .+..+|..|.
T Consensus 125 ------~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~~-----------~~~~~L~~~l-~d----~~~~vr~~a~ 180 (280)
T 1oyz_A 125 ------YSPKIVEQSQITAFDK--STNVRRATAFAISVINDK-----------ATIPLLINLL-KD----PNGDVRNWAA 180 (280)
T ss_dssp ------GHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC--------------CCHHHHHHHH-TC----SSHHHHHHHH
T ss_pred ------ccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCCH-----------HHHHHHHHHH-cC----CCHHHHHHHH
Confidence 1234556666667654 589999999999887421 1345666643 32 2335899999
Q ss_pred HHHHHHhccCcchHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHh
Q 003365 619 EALAMLALDSKSNCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLC 665 (826)
Q Consensus 619 eALamLa~es~~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC 665 (826)
++|..+...+ +..++.|..+|.| +..|..|+..|.++.
T Consensus 181 ~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 181 FAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 9998874221 2567788888877 467889999998886
No 59
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=93.00 E-value=6 Score=45.47 Aligned_cols=88 Identities=17% Similarity=0.222 Sum_probs=51.8
Q ss_pred CChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhH
Q 003365 562 KHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVV 641 (826)
Q Consensus 562 ~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi 641 (826)
+++++|-.|.+.|..++.... + ++...+..|+... +++..+|..|-+.|..++ +++|+..| +
T Consensus 294 ~d~~vr~~aL~~l~~i~~~~p--~-------~~~~~~~~~~~~~--~d~~~Ir~~al~~L~~l~--~~~nv~~i-----v 355 (591)
T 2vgl_B 294 GEPEVQYVALRNINLIVQKRP--E-------ILKQEIKVFFVKY--NDPIYVKLEKLDIMIRLA--SQANIAQV-----L 355 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHHCC--S-------TTTTCTTTTSCCT--TSCHHHHHHHHHHHHHTC--CSSTHHHH-----H
T ss_pred CCccHHHHHHHHHHHHHHhCh--H-------HHHHHHHhheecc--CChHHHHHHHHHHHHHHC--ChhhHHHH-----H
Confidence 446777777777766643211 0 0011112233221 122468888888888775 45677665 4
Q ss_pred HHHHHhhc--cchhHHHHHHHHHHHhhh
Q 003365 642 DKLVETLA--VPLVRVNAARILRNLCAS 667 (826)
Q Consensus 642 ~~Lv~mL~--d~~~r~~AA~IL~nLC~~ 667 (826)
+.|...+. |+.+|..++.-+.++|..
T Consensus 356 ~~L~~~l~~~d~~~r~~~v~aI~~la~~ 383 (591)
T 2vgl_B 356 AELKEYATEVDVDFVRKAVRAIGRCAIK 383 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 45555555 468899999999999974
No 60
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.88 E-value=22 Score=41.07 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhhc--cchhHHHHHHHHHHHhh
Q 003365 610 QNCVRIAAGEALAMLALDSKSNCHRILKLKVVDKLVETLA--VPLVRVNAARILRNLCA 666 (826)
Q Consensus 610 ~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL~--d~~~r~~AA~IL~nLC~ 666 (826)
+..+|..|-+.|..|+. +.|...|+ +.|...+. |+++|..+..-+.++|.
T Consensus 363 d~~Ir~~alelL~~l~~--~~nv~~iv-----~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 363 DVSIKRRAMELSFALVN--GNNIRGMM-----KELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp CHHHHHHHHHHHHHHCC--SSSTHHHH-----HHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHcc--cccHHHHH-----HHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34688888888887764 45766664 34444333 46889999999999987
No 61
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.29 E-value=25 Score=40.58 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhcccc
Q 003365 381 IERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQT 435 (826)
Q Consensus 381 i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt 435 (826)
+..|.+-|. ++ ++.+|..|.+.++.++.. . -+|..++.|-.+|..
T Consensus 109 in~l~kDL~--~~-n~~vr~lAL~~L~~i~~~---~----~~~~l~~~l~~~L~~ 153 (618)
T 1w63_A 109 TNCIKNDLN--HS-TQFVQGLALCTLGCMGSS---E----MCRDLAGEVEKLLKT 153 (618)
T ss_dssp HHHHHHHHS--CS-SSHHHHHHHHHHHHHCCH---H----HHHHHHHHHHHHHHS
T ss_pred HHHHHHhcC--CC-CHhHHHHHHHHHHhcCCH---H----HHHHHHHHHHHHHcC
Confidence 344444444 32 357899999999988752 1 123445556666653
No 62
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.23 E-value=4.5 Score=41.53 Aligned_cols=165 Identities=8% Similarity=0.109 Sum_probs=109.5
Q ss_pred chhhhhHHHHHccCCCChHHHHHHHHHHHhccCCcccc-cccc--chhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH
Q 003365 547 VFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDAT-ERIG--GTGGMLKELFNILFKEGMPENQNCVRIAAGEALAM 623 (826)
Q Consensus 547 ~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~r-e~Ig--~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALam 623 (826)
..++.-|..+|..+ .+...+..|..+|.+|| ...+ ..+. ....++..++..|=+ .+..++..|.+||..
T Consensus 59 ~~~~~~L~~~l~~D-~n~~v~~~A~~al~~la--~~l~~~~f~~~y~~~llp~ll~~l~d-----kk~~V~~aa~~al~~ 130 (249)
T 2qk1_A 59 SNLLGIYGHIIQKD-ANIQAVALAAQSVELIC--DKLKTPGFSKDYVSLVFTPLLDRTKE-----KKPSVIEAIRKALLT 130 (249)
T ss_dssp HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHH--HHHCTTTSCHHHHHHHHHHHHHGGGC-----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCHHHHHHHHHHHHHHH--HhcccccccHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHH
Confidence 35577777787322 34778899999999998 4445 4554 224455666664422 334577788888887
Q ss_pred HhccCcchHHHHH--hhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhccc--chhhhhhhH-HhHHHHHHHHHhchhhh
Q 003365 624 LALDSKSNCHRIL--KLKVVDKLVETLAV--PLVRVNAARILRNLCASSGA--DCFNQLRGV-TAAAPTILKAITSEDYK 696 (826)
Q Consensus 624 La~es~~Nc~~IL--ke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~--e~~~~Lk~l-~~alp~VL~~I~~~e~k 696 (826)
+......+. .- -+.++++|...|.+ +.-|..+...|..++..++. +.+ .+.+ ...+|.+.+.+-+.+..
T Consensus 131 i~~~~~~~~--~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l--~~~l~~~iip~l~~~l~D~~~~ 206 (249)
T 2qk1_A 131 ICKYYDPLA--SSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTL--QRYLKDEVVPIVIQIVNDTQPA 206 (249)
T ss_dssp HHHHSCTTC--TTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHH--HHHHTTTHHHHHHHHHTCSSHH
T ss_pred HHHHccccc--cCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhH--HHHHHHHHHHHHHHHhcCCCHH
Confidence 754332111 11 11567888888876 56788888999998876653 211 1236 67777777777777777
Q ss_pred HHHHHHHhHHHHhhcCCchhhHHHHHh
Q 003365 697 LQEVMIGLAAQVFRFMTREESSNIFER 723 (826)
Q Consensus 697 ~LE~ligLa~qIc~~i~~edfa~~l~~ 723 (826)
.-++-.-....||+.+..++|...+..
T Consensus 207 VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 207 IRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp HHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 778888888888988877778887775
No 63
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=90.54 E-value=28 Score=39.82 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=58.0
Q ss_pred ChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhHH
Q 003365 563 HPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVVD 642 (826)
Q Consensus 563 ~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi~ 642 (826)
+...++.|.++|.+++-+++ .+.+++.|.. |+.. .+...|..|..++..++...+.+.. ..++
T Consensus 331 ~~~Ir~~al~~L~~l~~~~n-------v~~iv~~L~~-~l~~----~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~ 393 (591)
T 2vgl_B 331 PIYVKLEKLDIMIRLASQAN-------IAQVLAELKE-YATE----VDVDFVRKAVRAIGRCAIKVEQSAE-----RCVS 393 (591)
T ss_dssp CHHHHHHHHHHHHHTCCSST-------HHHHHHHHHH-HTTS----SCHHHHHHHHHHHHHHHTTCHHHHH-----HHHH
T ss_pred hHHHHHHHHHHHHHHCChhh-------HHHHHHHHHH-HHhc----CCHHHHHHHHHHHHHHHHhChhHHH-----HHHH
Confidence 36789999999999974433 2457777776 6653 2446888999999999877654443 3466
Q ss_pred HHHHhhccc--hhHHHHHHHHHHHhh
Q 003365 643 KLVETLAVP--LVRVNAARILRNLCA 666 (826)
Q Consensus 643 ~Lv~mL~d~--~~r~~AA~IL~nLC~ 666 (826)
.|..+|.+. ..+.-+...++++..
T Consensus 394 ~Ll~ll~~~~~~v~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 394 TLLDLIQTKVNYVVQEAIVVIRDIFR 419 (591)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccchHHHHHHHHHHHHHHH
Confidence 777777652 233344555666654
No 64
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=89.82 E-value=1.7 Score=51.32 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHhccCcchHHHHHhhhhHHHH-HHhhcc--chhHHHHHHHHHHHhhhcccchhhh------hhhHHhH
Q 003365 612 CVRIAAGEALAMLALDSKSNCHRILKLKVVDKL-VETLAV--PLVRVNAARILRNLCASSGADCFNQ------LRGVTAA 682 (826)
Q Consensus 612 ~lr~~AGeALamLa~es~~Nc~~ILke~vi~~L-v~mL~d--~~~r~~AA~IL~nLC~~s~~e~~~~------Lk~l~~a 682 (826)
..|..|..||+.|+ ++.++...+++++.|..+ ..+|.| ...|.-||..|+|||.+.+.+.... +.-+.+.
T Consensus 49 ~~r~~A~~al~~l~-~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~ 127 (684)
T 4gmo_A 49 KSRTTAAGAIANIV-QDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHA 127 (684)
T ss_dssp SHHHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHH
Confidence 37888999999997 577777778888777665 456877 5789999999999999876542211 3334455
Q ss_pred HHHHHHHHhc---------hhh-----hHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCC
Q 003365 683 APTILKAITS---------EDY-----KLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIK 748 (826)
Q Consensus 683 lp~VL~~I~~---------~e~-----k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~ 748 (826)
+++..+.+-. ++. ...|-++.+-..+|.. +.+-+....+. ..+..|+..|-... ..
T Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~-s~~~~~~v~~~------~~l~~l~~~L~~~~---~~ 197 (684)
T 4gmo_A 128 AKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALA-RDEIHEAVATK------QTILRLLFRLISAD---IA 197 (684)
T ss_dssp HHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHTC------HHHHHHHHHHHHHC---CS
T ss_pred HHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHhc------ccHHHHHHHHHhcC---CC
Confidence 5554444321 111 1233455666666654 22223222221 34455555553222 12
Q ss_pred CChHHHHHHHHHHHHHhcCCccHHHHHhhc
Q 003365 749 VPRIRRYAIELAIWMMRDKATNVHIFKNLG 778 (826)
Q Consensus 749 ~prIRR~~vE~~I~mm~~~~~y~~~f~e~~ 778 (826)
.+.++..+.+....+-+.|......+.+.+
T Consensus 198 ~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~ 227 (684)
T 4gmo_A 198 PQDIYEEAISCLTTLSEDNLKVGQAITDDQ 227 (684)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHHhccCHHHHHHHHhcc
Confidence 356888888877777777777777766654
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=89.79 E-value=2.3 Score=50.14 Aligned_cols=124 Identities=12% Similarity=0.130 Sum_probs=82.1
Q ss_pred CChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccC-cchHHHHHhhhh
Q 003365 562 KHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDS-KSNCHRILKLKV 640 (826)
Q Consensus 562 ~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es-~~Nc~~ILke~v 640 (826)
.+++.|..|...|++|+-|.+.|+.+-. +++|..++...+.. ....+|..|..||-.|+.+. .+.|..|.+.++
T Consensus 46 ~~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D----~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~i 120 (684)
T 4gmo_A 46 PDAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTD----NNIDSRAAGWEILKVLAQEEEADFCVHLYRLDV 120 (684)
T ss_dssp SCCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTC----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCC----CCHHHHHHHHHHHHHHHhhcCchHHHHHHHcCh
Confidence 4588999999999999988888776554 34445555544442 23468999999999999764 688988888777
Q ss_pred HHHHHHhhccc-----------------------hhHHHHHHHHHHHhhhcccchhhhhhhH--HhHHHHHHHHHhchh
Q 003365 641 VDKLVETLAVP-----------------------LVRVNAARILRNLCASSGADCFNQLRGV--TAAAPTILKAITSED 694 (826)
Q Consensus 641 i~~Lv~mL~d~-----------------------~~r~~AA~IL~nLC~~s~~e~~~~Lk~l--~~alp~VL~~I~~~e 694 (826)
+..|..+|... .+...+-.+|.+||.++.+- ++.+ ...+|.++....+.+
T Consensus 121 l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~----~~~v~~~~~l~~l~~~L~~~~ 195 (684)
T 4gmo_A 121 LTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEI----HEAVATKQTILRLLFRLISAD 195 (684)
T ss_dssp HHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHH----HHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHH----HHHHHhcccHHHHHHHHHhcC
Confidence 77666665320 11224567888898765432 1111 345666666655443
No 66
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=89.44 E-value=6 Score=49.22 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=87.6
Q ss_pred hhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcc
Q 003365 548 FTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALD 627 (826)
Q Consensus 548 f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~e 627 (826)
.++..|-+.|.+ .+++.|..|+..|.+++-.-. + .....|+..|+..+.+. +..+|..|+++|+.++..
T Consensus 48 ~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~--~--~~~~~i~~~Ll~~l~d~-----~~~vR~~a~~~L~~i~~~ 116 (1230)
T 1u6g_C 48 KVVKMILKLLED--KNGEVQNLAVKCLGPLVSKVK--E--YQVETIVDTLCTNMLSD-----KEQLRDISSIGLKTVIGE 116 (1230)
T ss_dssp HHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSC--H--HHHHHHHHHHHHHTTCS-----SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhCC--H--HHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHh
Confidence 445556666654 468999999999999973211 1 12345677777765432 234788999999988765
Q ss_pred Ccch------HHHHHhhhhHHHHHHhhcc---chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHH
Q 003365 628 SKSN------CHRILKLKVVDKLVETLAV---PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQ 698 (826)
Q Consensus 628 s~~N------c~~ILke~vi~~Lv~mL~d---~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~L 698 (826)
.... .... ...++..|...+.| +..+..|..+|..+|...++.... .+...++.+++.+-+.+...-
T Consensus 117 l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~---~~~~ll~~l~~~L~~~~~~vR 192 (1230)
T 1u6g_C 117 LPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN---FHPSILTCLLPQLTSPRLAVR 192 (1230)
T ss_dssp CC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT---THHHHHHHHGGGGGCSSHHHH
T ss_pred CCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH---HHHHHHHHHHHHHcCCcHHHH
Confidence 4432 1111 12667888888863 467889999999999765543211 123334444433334443444
Q ss_pred HHHHHhHHHHhhcC
Q 003365 699 EVMIGLAAQVFRFM 712 (826)
Q Consensus 699 E~ligLa~qIc~~i 712 (826)
+..+.-..++....
T Consensus 193 ~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 193 KRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 44444344444443
No 67
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=89.26 E-value=19 Score=35.85 Aligned_cols=177 Identities=17% Similarity=0.217 Sum_probs=111.1
Q ss_pred ChHHHHHHHHHHHhccCC-ccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCcchHHHHHhhhhH
Q 003365 563 HPLLQKLGIDILTSLALE-EDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSKSNCHRILKLKVV 641 (826)
Q Consensus 563 ~~eLq~lAi~ILt~LA~D-~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~~Nc~~ILke~vi 641 (826)
+-..|+-|+.-|..+.-. ... .-+....++..|...+-.. ....++..|.++|..|+..-....... -+.++
T Consensus 28 ~w~~R~~a~~~L~~l~~~~~~~--~~~~~~~i~~~L~~~l~kd----~~~~V~~~a~~~l~~la~~l~~~~~~~-~~~il 100 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTDHPKL--ENGEYGALVSALKKVITKD----SNVVLVAMAGKCLALLAKGLAKRFSNY-ASACV 100 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHCSSB--CCCCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCCC--CCCCHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHH
Confidence 466777788888777533 111 1122356677777765312 123477889999999985322221111 11577
Q ss_pred HHHHHhhccc--hhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCch-hhH
Q 003365 642 DKLVETLAVP--LVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTRE-ESS 718 (826)
Q Consensus 642 ~~Lv~mL~d~--~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~e-dfa 718 (826)
..|...+.|+ ..|..|+..|.+++.... +...+|.+++.+-++.-..-+..++....+.....|+ .+.
T Consensus 101 p~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 101 PSLLEKFKEKKPNVVTALREAIDAIYASTS---------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 8888888874 678899999999987432 4456677777666666566666677766655433444 233
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHHHhcCC
Q 003365 719 NIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAIWMMRDKA 768 (826)
Q Consensus 719 ~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I~mm~~~~ 768 (826)
..+. .++..|+..|+ -.-|.+|..+++.+-.+++.-+
T Consensus 172 ~~l~-------~l~p~l~~~l~------D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 172 KLLK-------LLTTSLVKTLN------EPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHH-------HHHHHHHHHHT------SSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-------HHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHcC
Confidence 3332 57777888775 2256899999998888876644
No 68
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=83.59 E-value=9.2 Score=39.16 Aligned_cols=138 Identities=12% Similarity=0.127 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHH-HhccCcchHHHHH--hh---hhHHHHHHhh-ccc--hhHHHHHHHHHHHhhhcc-cchhhhhhhHHh
Q 003365 612 CVRIAAGEALAM-LALDSKSNCHRIL--KL---KVVDKLVETL-AVP--LVRVNAARILRNLCASSG-ADCFNQLRGVTA 681 (826)
Q Consensus 612 ~lr~~AGeALam-La~es~~Nc~~IL--ke---~vi~~Lv~mL-~d~--~~r~~AA~IL~nLC~~s~-~e~~~~Lk~l~~ 681 (826)
..|+.|.++|+. +... |..+. .. ++++.|...| .|. ..+..|++.|..||.+.+ ++.. -+....
T Consensus 31 ~eRk~al~~L~~~~~~~----~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~--~~y~~~ 104 (249)
T 2qk1_A 31 KDRVEALEEFWDSVLSQ----TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS--KDYVSL 104 (249)
T ss_dssp HHHHHHHHHHHHHTGGG----CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC--HHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc--HHHHHH
Confidence 577889999988 7643 22222 11 5677777788 453 567899999999998666 5431 023666
Q ss_pred HHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCchhhHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Q 003365 682 AAPTILKAITSEDYKLQEVMIGLAAQVFRFMTREESSNIFERAGIMEIDLANTLVQILRKYQHPPIKVPRIRRYAIELAI 761 (826)
Q Consensus 682 alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~edfa~~l~~~~i~~~~fv~kLv~iL~~n~~Pt~~~prIRR~~vE~~I 761 (826)
.+|.+++...+.+....++...-...||+.++|... .+ .-..++..|...|+ |. -|.+|.-++..+.
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~------~~-~l~~ll~~l~~~l~-~k-----~~~vk~~al~~l~ 171 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS------SG-RNEDMLKDILEHMK-HK-----TPQIRMECTQLFN 171 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCT------TC-TTHHHHHHHHHHTT-CS-----SHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccccc------CC-cHHHHHHHHHHHHc-CC-----ChHHHHHHHHHHH
Confidence 789999988887766667777777777776644110 00 01246666666654 22 2566777776666
Q ss_pred HHHhcCC
Q 003365 762 WMMRDKA 768 (826)
Q Consensus 762 ~mm~~~~ 768 (826)
...+..+
T Consensus 172 ~~~~~~~ 178 (249)
T 2qk1_A 172 ASMKEEK 178 (249)
T ss_dssp HHHHHCC
T ss_pred HHHHHcC
Confidence 6665544
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=83.47 E-value=9.4 Score=39.92 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=87.4
Q ss_pred HhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEE
Q 003365 340 ELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRV 419 (826)
Q Consensus 340 dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv 419 (826)
+++.++..+--+.++|.|.+++.+.+.......|++ +++..++ ++ .+.-.+++||.++..| ++
T Consensus 82 ~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~---~aL~dli-----k~-~~~il~~eaae~Lgkl--------kv 144 (265)
T 3b2a_A 82 NALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAA---KTLVSLL-----ES-PDDMMRIETIDVLSKL--------QP 144 (265)
T ss_dssp HTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHH---HHHHHHT-----TS-CCHHHHHHHHHHHHHC--------CB
T ss_pred HHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHHHh-----cC-CCchHHHHHHHHhCcC--------Cc
Confidence 455555555579999999999999887666554432 2333322 23 3568999999998875 45
Q ss_pred ec-ccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhh---ccccccccccccCchhhhh
Q 003365 420 AG-IPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLAR---NHDNCGKIGNTRGLLPKII 495 (826)
Q Consensus 420 ~~-iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~---D~~NC~~I~~t~gLIsKII 495 (826)
.. +|+-+..|+||+ .+.+ .++...|+..|-..|. |.++-..|- +-|-
T Consensus 145 ~~~~~~V~~~l~sLl-~Skd----------------------~~vK~agl~~L~eia~~S~D~~i~~~I~------~eI~ 195 (265)
T 3b2a_A 145 LEDSKLVRTYINELV-VSPD----------------------LYTKVAGFCLFLNMLNSSADSGHLTLIL------DEIP 195 (265)
T ss_dssp SCCCHHHHHHHHHHH-TCSS----------------------HHHHHHHHHHHHHHGGGCSSCCCGGGTT------TTHH
T ss_pred ccchHHHHHHHHHHH-hCCC----------------------hhHHHHHHHHHHHhhcccCCHHHHHHHH------HHHH
Confidence 55 789999999999 3322 2678899999999986 555444332 2222
Q ss_pred cccccchhhhcccCCChhHHHHHHHHHHHHHHHhhC
Q 003365 496 DFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLAST 531 (826)
Q Consensus 496 ~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~ 531 (826)
+++.++ -..+++.+|-.+-+..+-
T Consensus 196 -------elL~~e-----D~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 196 -------SLLQND-----NEFIVELALDVLEKALSF 219 (265)
T ss_dssp -------HHHTCS-----CHHHHHHHHHHHHHHTTS
T ss_pred -------HHHcCC-----CHHHHHHHHHHHHHHHcC
Confidence 233332 135667777777666554
No 70
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=81.38 E-value=86 Score=36.34 Aligned_cols=241 Identities=17% Similarity=0.187 Sum_probs=121.5
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhcccccc
Q 003365 379 SVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANY 458 (826)
Q Consensus 379 ~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~ 458 (826)
+-+++|.++|+ ..|..++..|...+.+++.++...+ ..-+|..++.+..++..+.-+.. ++.-+
T Consensus 187 ~~~~~l~~lL~---d~d~~V~~~a~~~l~~i~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~~~------------~~~~~ 250 (621)
T 2vgl_A 187 DWTSRVVHLLN---DQHLGVVTAATSLITTLAQKNPEEF-KTSVSLAVSRLSRIVTSASTDLQ------------DYTYY 250 (621)
T ss_dssp SCHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHCHHHH-TTHHHHHHHHHHHHHHCCSSSCS------------TTEET
T ss_pred hHHHHHHHHhC---CCCccHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHHhCCCCCcc------------chhhc
Confidence 56778888885 2456899999999999987521111 11356666767777654321100 00000
Q ss_pred CcchhhhhHHHHHHHHhhccccc-ccccc-ccCchhhhhcccccch--hhhcccCCChhHHHHHHHHHHHHHHHhhCccc
Q 003365 459 GFWTFNHLGLLILKKLARNHDNC-GKIGN-TRGLLPKIIDFTHAEE--SLLRNEHDTSSQILTVRRSLQLVKMLASTTGI 534 (826)
Q Consensus 459 ~~~~L~~~GL~IL~kLA~D~~NC-~~I~~-t~gLIsKII~ft~~~~--~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge 534 (826)
+ -.=+|.=..||+-|+.-.... .+..+ -.+.+..++.-+.... ..++. ......++-++.+++-.+.+.
T Consensus 251 ~-~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~---~n~~~aVl~ea~~~i~~l~~~--- 323 (621)
T 2vgl_A 251 F-VPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQH---SNAKNAVLFEAISLIIHHDSE--- 323 (621)
T ss_dssp T-EESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHH---HHHHHHHHHHHHHHHHHHCCC---
T ss_pred C-CCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccc---cchHHHHHHHHHHHHHhcCCc---
Confidence 0 001444455555555311000 00000 0012333331110000 01110 012345666777777666422
Q ss_pred hhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHH
Q 003365 535 TGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVR 614 (826)
Q Consensus 535 ~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr 614 (826)
..+++. ++..|...|. .+++++|-.|...|..++.-... ..++......|+..=..+++..+|
T Consensus 324 --~~~~~~------~~~~L~~~L~--~~~~niry~aL~~l~~l~~~~~~-------~~~~~~~~~~i~~~L~~d~d~~Ir 386 (621)
T 2vgl_A 324 --PNLLVR------ACNQLGQFLQ--HRETNLRYLALESMCTLASSEFS-------HEAVKTHIETVINALKTERDVSVR 386 (621)
T ss_dssp --HHHHHH------HHHHHHHHSS--CSCHHHHHHHHHHHHHHTTCTTT-------HHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred --HHHHHH------HHHHHHHHhc--CCCcchHHHHHHHHHHHHhccCc-------HHHHHHHHHHHHHHhccCCCHhHH
Confidence 223332 3344555554 34689999999999999754321 122333333343210001335688
Q ss_pred HHHHHHHHHHhccCcchHHHHHhhhhHHHHHHhh--ccchhHHHHHHHHHHHhh
Q 003365 615 IAAGEALAMLALDSKSNCHRILKLKVVDKLVETL--AVPLVRVNAARILRNLCA 666 (826)
Q Consensus 615 ~~AGeALamLa~es~~Nc~~ILke~vi~~Lv~mL--~d~~~r~~AA~IL~nLC~ 666 (826)
..|-+.|..|+ +++|...|+++ |..-+ .|+.++.-+.+=+..+|.
T Consensus 387 ~~aL~lL~~l~--~~~Nv~~Iv~e-----L~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 387 QRAVDLLYAMC--DRSNAQQIVAE-----MLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHHHC--CHHHHHHHHHH-----HHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--ChhhHHHHHHH-----HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 88888888876 55788888664 33322 256777777766777775
No 71
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=79.94 E-value=35 Score=41.32 Aligned_cols=136 Identities=9% Similarity=0.091 Sum_probs=85.3
Q ss_pred HHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhccCC--c--cccccccc--hhhHHHHHHHHHhcCCCCCchhhHHH
Q 003365 542 EISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSLALE--E--DATERIGG--TGGMLKELFNILFKEGMPENQNCVRI 615 (826)
Q Consensus 542 eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D--~--~~re~Ig~--~~~iI~~L~~iFl~~~~~~~~~~lr~ 615 (826)
+..++|....-|..|+.+...+.+.|..|+-+|+|..-- . +....|.. ...|=..|+..+... + ..+|.
T Consensus 29 ~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~----~-~~ir~ 103 (960)
T 1wa5_C 29 QLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL----P-NNLQV 103 (960)
T ss_dssp HHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS----C-HHHHH
T ss_pred HhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC----C-HHHHH
Confidence 445667777788889876666789999999999987311 0 00001211 122334566655543 1 46888
Q ss_pred HHHHHHHHHhccCcchHHHHHhh--hhHHHHHHhhcc--chhHHHHHHHHHHHhhhccc-----chhhhhhh-HHhHHHH
Q 003365 616 AAGEALAMLALDSKSNCHRILKL--KVVDKLVETLAV--PLVRVNAARILRNLCASSGA-----DCFNQLRG-VTAAAPT 685 (826)
Q Consensus 616 ~AGeALamLa~es~~Nc~~ILke--~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~-----e~~~~Lk~-l~~alp~ 685 (826)
.++++++.++...- -.+ +.++.|+..+.+ +..+..|=.+|..+|..... +...+++. +....|.
T Consensus 104 ~l~~~ia~ia~~d~------p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (960)
T 1wa5_C 104 QIGEAISSIADSDF------PDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAP 177 (960)
T ss_dssp HHHHHHHHHHHHHS------TTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC------ccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Confidence 99999998874311 122 788999988864 46777888889999974332 23334444 5566665
Q ss_pred HHH
Q 003365 686 ILK 688 (826)
Q Consensus 686 VL~ 688 (826)
+++
T Consensus 178 ll~ 180 (960)
T 1wa5_C 178 FLN 180 (960)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 72
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=64.25 E-value=37 Score=36.24 Aligned_cols=150 Identities=11% Similarity=0.096 Sum_probs=89.9
Q ss_pred hhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccch---hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcc
Q 003365 551 SNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGT---GGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALD 627 (826)
Q Consensus 551 sNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~---~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~e 627 (826)
.-+..|+... .+.+=.++++|+.++.+.....-+... ..++..+...+ ... .....++.+-+.+++|- .
T Consensus 106 ~~l~kil~WP---~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~-~~~---~~p~n~ml~lR~l~NlF-~ 177 (304)
T 3ebb_A 106 QILWKAINCP---EDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLL-NPK---GKPANQLLALRTFCNCF-V 177 (304)
T ss_dssp HHHHHHHTSC---TTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTT-CTT---SCHHHHHHHHHHHHHGG-G
T ss_pred HHHHHHHcCC---HHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhc-CCC---CChHHHHHHHHHHHHcc-C
Confidence 4455566333 345567999999999988776433221 23444444433 221 11235788999999984 5
Q ss_pred CcchHHHHHhh--hhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHH
Q 003365 628 SKSNCHRILKL--KVVDKLVETLAV--PLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIG 703 (826)
Q Consensus 628 s~~Nc~~ILke--~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~lig 703 (826)
++.....|+.. .+++.++..+.+ ...++.+|.++=|+..+...+. ++.+ ...+-.++..|..++ +.-|++-+
T Consensus 178 ~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~--~~~~-~~~ll~~l~~il~~~-~d~EalyR 253 (304)
T 3ebb_A 178 GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDH--NIEG-KAQCLSLISTILEVV-QDLEATFR 253 (304)
T ss_dssp SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSC--CHHH-HHHHHHHHHHHHTTC-CCHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcC--CchH-HHHHHHHHHHHHhcc-CCHHHHHH
Confidence 55555556554 677777776653 5789999999999999643221 1211 111233444455433 35588888
Q ss_pred hHHHHhhcC
Q 003365 704 LAAQVFRFM 712 (826)
Q Consensus 704 La~qIc~~i 712 (826)
+.+.+-.++
T Consensus 254 ~LvALGtL~ 262 (304)
T 3ebb_A 254 LLVALGTLI 262 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777655
No 73
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=58.55 E-value=43 Score=29.94 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=55.2
Q ss_pred hhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccCc
Q 003365 550 ISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDSK 629 (826)
Q Consensus 550 lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es~ 629 (826)
+..|.+.|+| .++..+..|+..|.++.- ...+..|+..+-+ .+..+|..|.+||..+..
T Consensus 44 ~~~L~~~L~d--~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L~d-----~~~~VR~~A~~aL~~~~~--- 102 (131)
T 1te4_A 44 FEPLLESLSN--EDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLED-----DSGFVRSGAARSLEQIGG--- 102 (131)
T ss_dssp HHHHHHGGGC--SCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHH-----CCTHHHHHHHHHHHHHCS---
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcC-----CCHHHHHHHHHHHHHhCc---
Confidence 3556666765 458999999999988751 1234555554422 223589999999998741
Q ss_pred chHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHH
Q 003365 630 SNCHRILKLKVVDKLVETLAV--PLVRVNAARILR 662 (826)
Q Consensus 630 ~Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~ 662 (826)
...++.|+..|.| +..|..|+.-|.
T Consensus 103 --------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 103 --------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp --------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred --------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2457778888876 455666666554
No 74
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=58.43 E-value=2.1e+02 Score=31.11 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=84.6
Q ss_pred hhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccC
Q 003365 549 TISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDS 628 (826)
Q Consensus 549 ~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es 628 (826)
-+.-|..|..++ ++..|--+...|.+|-...+....|-+...+|+.+.. |+++ ....+.+.|-+-|-.+..-|
T Consensus 161 GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lys-lv~s----~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 161 GLSCLIRVGAAA--DHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYT-LCAS----LSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp HHHHHHHHHTTS--CHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHH-GGGC----SCHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHhc--ChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHH-HHcC----ccHHHHHHHHHHHHHHHccC
Confidence 355666666554 5888888999999997776666666556778888888 6663 23456667888888888889
Q ss_pred cchHHHHHhhhh----------HHHHHHhhc-----cchhHHHHHHHHHHHhhhccc
Q 003365 629 KSNCHRILKLKV----------VDKLVETLA-----VPLVRVNAARILRNLCASSGA 670 (826)
Q Consensus 629 ~~Nc~~ILke~v----------i~~Lv~mL~-----d~~~r~~AA~IL~nLC~~s~~ 670 (826)
++|+..+.++-. ...|+..|. |.+....|-.++.-+...+.+
T Consensus 234 e~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd 290 (339)
T 3dad_A 234 ENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPD 290 (339)
T ss_dssp GGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred cccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 999998877622 678888886 357777888888888776554
No 75
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=51.99 E-value=1.7e+02 Score=29.67 Aligned_cols=185 Identities=13% Similarity=0.146 Sum_probs=92.5
Q ss_pred ccCcchhhhhHHHHHHHHhhcc-------ccccccccccCchhhhhcccccchhhhcccCCChhHHHHHHHHHHHHHHHh
Q 003365 457 NYGFWTFNHLGLLILKKLARNH-------DNCGKIGNTRGLLPKIIDFTHAEESLLRNEHDTSSQILTVRRSLQLVKMLA 529 (826)
Q Consensus 457 ~~~~~~L~~~GL~IL~kLA~D~-------~NC~~I~~t~gLIsKII~ft~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLa 529 (826)
....|..-..|+.-|.++-.+. +....+.+..+++.|++. + .-..++..+|+++..++
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~----------D-----sN~~v~~~al~~l~~~~ 83 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT----------D-----SNVVAQEQAIVALNSLI 83 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT----------C-----SSHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc----------c-----chHHHHHHHHHHHHHHH
Confidence 3567999999999888875421 111223333344555441 1 23456788999999998
Q ss_pred hCccchhhHHHHHHhhc-chhhhhHHH-HHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCC
Q 003365 530 STTGITGEHLRREISEV-VFTISNIRD-ILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMP 607 (826)
Q Consensus 530 s~~Ge~G~~LR~eIS~~-~f~lsNL~~-IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~ 607 (826)
...|..+. .+...... ...+..|.+ .|.+ ..+..+..|.+.+..++--. +....++..++. ++.+.
T Consensus 84 ~~~~~~~~-~~~~~~~~~~~~l~~lveK~l~~--~k~~~~~~a~~~l~~~~~~~------~~~~~~~e~l~~-~l~~K-- 151 (278)
T 4ffb_C 84 DAFASSSL-KNAHNITLISTWTPLLVEKGLTS--SRATTKTQSMSCILSLCGLD------TSITQSVELVIP-FFEKK-- 151 (278)
T ss_dssp TTCC---C-CHHHHHHHHHHHHHHHHHHTSSC--CCHHHHHHHHHHHHHHHHTS------SSSHHHHHHHGG-GGGCS--
T ss_pred HHhhhhhc-ccchhHHHHHHHHHHHHHHHhcC--ccHHHHHHHHHHHHHHHHhc------CcHHHHHHHHHH-HHhcc--
Confidence 77654321 11111111 122333332 2333 34778888888887664111 122334444444 33322
Q ss_pred CchhhHHHHHHHHHHHHhcc-Ccc--hHHHHHhhhhHHHHHHhhcc--chhHHHHHHHHHHHhhhcccc
Q 003365 608 ENQNCVRIAAGEALAMLALD-SKS--NCHRILKLKVVDKLVETLAV--PLVRVNAARILRNLCASSGAD 671 (826)
Q Consensus 608 ~~~~~lr~~AGeALamLa~e-s~~--Nc~~ILke~vi~~Lv~mL~d--~~~r~~AA~IL~nLC~~s~~e 671 (826)
+ -.++..+-+.|..+..+ ... |-...++ .+++.+...|.| +..|-.|..++--|+.|-++.
T Consensus 152 -n-pkv~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 152 -L-PKLIAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp -C-HHHHHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred -C-HHHHHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 1 12444444444443222 111 1111111 234455566765 688999999999999987753
No 76
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=50.94 E-value=1.5e+02 Score=33.63 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=69.0
Q ss_pred HHHHHHHhh--hcccchhhhhhhHHhHHHHHHHHHhchhhhHHHHHHHhHHHHhhcCCc---hhhH----HHHHhcCCCh
Q 003365 658 ARILRNLCA--SSGADCFNQLRGVTAAAPTILKAITSEDYKLQEVMIGLAAQVFRFMTR---EESS----NIFERAGIME 728 (826)
Q Consensus 658 A~IL~nLC~--~s~~e~~~~Lk~l~~alp~VL~~I~~~e~k~LE~ligLa~qIc~~i~~---edfa----~~l~~~~i~~ 728 (826)
-.+|+||.. |+.+|...+++.+.+.|-+..+...+=+.=.-|+.-|. .++-++ |.|= ..|++ +.
T Consensus 321 l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~----L~WSP~H~se~FW~ENa~kf~e---~~ 393 (480)
T 1ho8_A 321 LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKL----LCWSPPHVDNGFWSDNIDEFKK---DN 393 (480)
T ss_dssp HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTC----CCCCGGGGCHHHHHHHSGGGSS---GG
T ss_pred hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCC----cccCCCccchhHHHHHHHHHHh---cc
Confidence 467888886 34445567777777766665553322222233444353 334222 3552 23443 33
Q ss_pred HHHHHHHHHHHhhc---------CCCCC-------------CCChHHHHHHH-----HHHHHHhcCCccHHHHHhhcHHH
Q 003365 729 IDLANTLVQILRKY---------QHPPI-------------KVPRIRRYAIE-----LAIWMMRDKATNVHIFKNLGLEM 781 (826)
Q Consensus 729 ~~fv~kLv~iL~~n---------~~Pt~-------------~~prIRR~~vE-----~~I~mm~~~~~y~~~f~e~~m~e 781 (826)
.+++|+|+++|+.. +.|+. ++|+-|+++-+ .++.+|.|...-++ .+
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr-------~~ 466 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVK-------YE 466 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHH-------HH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHH-------HH
Confidence 58999999999852 12422 67988887544 56788877544444 26
Q ss_pred HHHHHHHHh
Q 003365 782 VLESVIETT 790 (826)
Q Consensus 782 aL~~v~~T~ 790 (826)
||..|.+-+
T Consensus 467 AL~avQklm 475 (480)
T 1ho8_A 467 ALKATQAII 475 (480)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=47.56 E-value=1.7e+02 Score=30.60 Aligned_cols=178 Identities=15% Similarity=0.202 Sum_probs=99.6
Q ss_pred HHhhcCCCcchhhhhhHHHHHHhhCcCCchHHHHHhccCHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHhccCCCce
Q 003365 339 MELLDSNSPDEQLIGARILRQFAMSKRFSDDTLQKIGINLSVIERFVEML-NWKDPQEEEIRRSAAEILSKLAGKKQNSL 417 (826)
Q Consensus 339 ~dll~S~S~~~qL~GvriL~~~l~~~~~~~~~L~kl~tS~~~i~rLi~ML-~wts~~d~eiR~~AArIva~LA~~~~nsL 417 (826)
.++|..+.+.-++-++.+|..++++-+- . .+...+++++..+ +-+...|+-+-..|.|++.-|-.+ ..+
T Consensus 39 ~~LL~dkD~~vk~raL~~LeellK~~~~---~-----l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~--vpL 108 (265)
T 3b2a_A 39 LELAGEDDETTRLRAFVALGEILKRADS---D-----LRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKD--VPM 108 (265)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHSCH---H-----HHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT--CCB
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhccc---c-----ccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CCC
Confidence 3445555555566666676666664221 0 1223445555443 344566788999999999988764 121
Q ss_pred EEecccchhHHhhhccccCCCCCCCcccchhhhhhccccccCcchhhhhHHHHHHHHhhccccccccccccCchhhhhcc
Q 003365 418 RVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHANYGFWTFNHLGLLILKKLARNHDNCGKIGNTRGLLPKIIDF 497 (826)
Q Consensus 418 rv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~~~~~~L~~~GL~IL~kLA~D~~NC~~I~~t~gLIsKII~f 497 (826)
.=.++--.++.+.+++..++. -+-......|++| +...+.+|++++
T Consensus 109 ~~~~y~Kl~~aL~dlik~~~~-----------------------il~~eaae~Lgkl-----------kv~~~~~~V~~~ 154 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSLLESPDD-----------------------MMRIETIDVLSKL-----------QPLEDSKLVRTY 154 (265)
T ss_dssp CHHHHHHHHHHHHHHTTSCCH-----------------------HHHHHHHHHHHHC-----------CBSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCc-----------------------hHHHHHHHHhCcC-----------CcccchHHHHHH
Confidence 111122233334444432110 1122233344444 445778888876
Q ss_pred cccchhhhcccCCChhHHHHHHHHHHHHHHHhhCccchhhHHHHHHhhcchhhhhHHHHHccCCCChHHHHHHHHHHHhc
Q 003365 498 THAEESLLRNEHDTSSQILTVRRSLQLVKMLASTTGITGEHLRREISEVVFTISNIRDILLHGEKHPLLQKLGIDILTSL 577 (826)
Q Consensus 498 t~~~~~ll~~~~~~~~~~~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~L 577 (826)
+. .++++.+ -+. =..+|+++...++-+|+.+ |.+ ..++.+.++|.+. ++.+++.|..+|-..
T Consensus 155 l~---sLl~Skd---~~v--K~agl~~L~eia~~S~D~~------i~~--~I~~eI~elL~~e--D~~l~e~aLd~Le~i 216 (265)
T 3b2a_A 155 IN---ELVVSPD---LYT--KVAGFCLFLNMLNSSADSG------HLT--LILDEIPSLLQND--NEFIVELALDVLEKA 216 (265)
T ss_dssp HH---HHHTCSS---HHH--HHHHHHHHHHHGGGCSSCC------CGG--GTTTTHHHHHTCS--CHHHHHHHHHHHHHH
T ss_pred HH---HHHhCCC---hhH--HHHHHHHHHHhhcccCCHH------HHH--HHHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence 63 2443321 122 1357877877777666533 223 3677888998876 699999999999776
Q ss_pred c
Q 003365 578 A 578 (826)
Q Consensus 578 A 578 (826)
.
T Consensus 217 l 217 (265)
T 3b2a_A 217 L 217 (265)
T ss_dssp T
T ss_pred H
Confidence 4
No 78
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=46.48 E-value=3e+02 Score=34.04 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=42.1
Q ss_pred cchhhhhHHHHHccC-----CCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 003365 546 VVFTISNIRDILLHG-----EKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEA 620 (826)
Q Consensus 546 ~~f~lsNL~~IL~~~-----~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeA 620 (826)
||..+.-|..+|... ...+.++..|+..|++++.... ..+-..|+++|.+.. ....+|+.|--.
T Consensus 469 ~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p--------~~v~~il~~i~~n~~---e~~EvRiaA~~~ 537 (1056)
T 1lsh_A 469 QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP--------RKVQEIVLPIFLNVA---IKSELRIRSCIV 537 (1056)
T ss_dssp CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH--------HHHHHHHHHHHHCTT---SCHHHHHHHHHH
T ss_pred ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch--------HHHHHHHHHHhcCCC---CChHHHHHHHHH
Confidence 355666677776431 2235688889999999984321 245578999999875 444588766544
Q ss_pred H
Q 003365 621 L 621 (826)
Q Consensus 621 L 621 (826)
|
T Consensus 538 L 538 (1056)
T 1lsh_A 538 F 538 (1056)
T ss_dssp H
T ss_pred H
Confidence 4
No 79
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=46.24 E-value=42 Score=32.20 Aligned_cols=76 Identities=13% Similarity=0.273 Sum_probs=58.1
Q ss_pred chhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCch-HHH-------HHhcc---CHHHHHHHHHHhCCCCcccHHHHHH
Q 003365 333 DMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFSD-DTL-------QKIGI---NLSVIERFVEMLNWKDPQEEEIRRS 401 (826)
Q Consensus 333 ~LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~~-~~L-------~kl~t---S~~~i~rLi~ML~wts~~d~eiR~~ 401 (826)
.--.||..|+.|..++++-.|+.||..+++..+.+. +-| -|++. +.+-++.|++ ..|.+.+.+.+
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~----~eP~n~QA~~L 116 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE----HERNNKQVGAL 116 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----TCCCCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCcHHHHHH
Confidence 455789999999999999999999999998765432 222 24443 5566777776 57888898888
Q ss_pred HHHHHHHHhcc
Q 003365 402 AAEILSKLAGK 412 (826)
Q Consensus 402 AArIva~LA~~ 412 (826)
-..|-.+++.+
T Consensus 117 k~~Ie~~i~kd 127 (144)
T 1y8m_A 117 KSMVEDKIQKE 127 (144)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 88888888765
No 80
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=45.17 E-value=5.4e+02 Score=32.03 Aligned_cols=64 Identities=23% Similarity=0.424 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccccCCCCCCCcccchhhhhhccccc
Q 003365 378 LSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQTNRSSGAATDEIGEKKIILDHAN 457 (826)
Q Consensus 378 ~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLdt~~~~~~~~d~~~~~~~~~~~~~ 457 (826)
...++.+++.+-- | +.+.|..|-+.+.++-.. |++.+....+|+.+.+
T Consensus 27 v~~Le~lv~~ly~--p-~~~~r~qA~~~L~q~q~s----------p~aw~~~~~iL~~s~~------------------- 74 (1073)
T 3gjx_A 27 INLLDNVVNCLYH--G-EGAQQRMAQEVLTHLKEH----------PDAWTRVDTILEFSQN------------------- 74 (1073)
T ss_dssp HHHHHHHHHTTTC--S-SHHHHHHHHHHHHTSSCC----------SCHHHHHTCC---CCS-------------------
T ss_pred HHHHHHHHHHHhC--C-CHHHHHHHHHHHHHHHcC----------chHHHHHHHHhcCCCC-------------------
Confidence 4567777766532 2 245788888888877654 8999888888865422
Q ss_pred cCcchhhhhHHHHHHHHhh
Q 003365 458 YGFWTFNHLGLLILKKLAR 476 (826)
Q Consensus 458 ~~~~~L~~~GL~IL~kLA~ 476 (826)
-+...+|+.+|++...
T Consensus 75 ---~~vR~fAa~~L~~~I~ 90 (1073)
T 3gjx_A 75 ---MNTKYYGLQILENVIK 90 (1073)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHH
Confidence 1457789999998754
No 81
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=44.77 E-value=39 Score=32.07 Aligned_cols=76 Identities=13% Similarity=0.273 Sum_probs=56.0
Q ss_pred chhHHHHHhhcCCCcchhhhhhHHHHHHhhCcCCc-hHHH-------HHhcc---CHHHHHHHHHHhCCCCcccHHHHHH
Q 003365 333 DMVIFGMELLDSNSPDEQLIGARILRQFAMSKRFS-DDTL-------QKIGI---NLSVIERFVEMLNWKDPQEEEIRRS 401 (826)
Q Consensus 333 ~LVtFA~dll~S~S~~~qL~GvriL~~~l~~~~~~-~~~L-------~kl~t---S~~~i~rLi~ML~wts~~d~eiR~~ 401 (826)
.--.||..|+.|..++++--||.||..+++..+.+ .+-+ -|++. +.+-+++|++ ..|.+.+.+.+
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~----~eP~N~QA~~L 117 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE----HERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TCTTCHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----hCCCCHHHHHH
Confidence 44578999999999999999999999999866532 2222 24443 4555666665 67888888888
Q ss_pred HHHHHHHHhcc
Q 003365 402 AAEILSKLAGK 412 (826)
Q Consensus 402 AArIva~LA~~ 412 (826)
-..|-.+++.+
T Consensus 118 k~~Ie~ki~kd 128 (134)
T 3o48_A 118 KSMVEDKIQKE 128 (134)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 88887777754
No 82
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=41.64 E-value=3.7e+02 Score=32.14 Aligned_cols=164 Identities=9% Similarity=0.024 Sum_probs=74.2
Q ss_pred HHHHhhc-chhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccc-hhhHHHHHHHHH---hcCCCCCchhhHH
Q 003365 540 RREISEV-VFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGG-TGGMLKELFNIL---FKEGMPENQNCVR 614 (826)
Q Consensus 540 R~eIS~~-~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~-~~~iI~~L~~iF---l~~~~~~~~~~lr 614 (826)
+.++..+ +.++..|..+++.+.-+.+.+..+.+.+..++.--. .++++. ...++..++..+ .... ..+ ...+
T Consensus 575 ~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~-~~~-~~~~ 651 (971)
T 2x1g_F 575 QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR-PEEIPKYLDIIVSPCFEELQAICQAD-SKT-PAAR 651 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHTC----C-HHHH
T ss_pred HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhcC-CCC-hhhH
Confidence 3444443 567777778877654456677667776666642111 111111 233333333322 2221 101 1123
Q ss_pred HHHHHHHHHHhc-----cC-----------cchHHHHHhh--hhHHHHHHhh-ccchhHHHHHHHHHHHhhhcccchhhh
Q 003365 615 IAAGEALAMLAL-----DS-----------KSNCHRILKL--KVVDKLVETL-AVPLVRVNAARILRNLCASSGADCFNQ 675 (826)
Q Consensus 615 ~~AGeALamLa~-----es-----------~~Nc~~ILke--~vi~~Lv~mL-~d~~~r~~AA~IL~nLC~~s~~e~~~~ 675 (826)
..+.++|..|+. .+ .+.+..+... .++..+.... .|+.....+..++++++...+.+
T Consensus 652 ~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~---- 727 (971)
T 2x1g_F 652 IRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSS---- 727 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhh----
Confidence 334445544431 11 1122223222 2333333222 23455667777888887643332
Q ss_pred hhhHHhHHHHHHHHHhchh-hhHHHHHHHhHHHHhhcCC
Q 003365 676 LRGVTAAAPTILKAITSED-YKLQEVMIGLAAQVFRFMT 713 (826)
Q Consensus 676 Lk~l~~alp~VL~~I~~~e-~k~LE~ligLa~qIc~~i~ 713 (826)
+...+|.+++.++..- ....-.+++++++|++...
T Consensus 728 ---~~p~l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~~ 763 (971)
T 2x1g_F 728 ---FQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMFF 763 (971)
T ss_dssp ----CTHHHHHHHHHHHHCC--CCHHHHHHHHHHHTTCC
T ss_pred ---ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhC
Confidence 2223555555443211 1122458999999988543
No 83
>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633}
Probab=36.21 E-value=91 Score=27.86 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=39.8
Q ss_pred hHHHHHHhhccchhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHhchh-hhHHHHHHHhHHH
Q 003365 640 VVDKLVETLAVPLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAITSED-YKLQEVMIGLAAQ 707 (826)
Q Consensus 640 vi~~Lv~mL~d~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~~~e-~k~LE~ligLa~q 707 (826)
+++.=...|+|++++.+-==..-|+|.+.+.+.+ ...-.+.+.++...-+.++ .|++|-+||.+.-
T Consensus 24 f~~SW~~Al~~~eF~aIlrL~F~hi~~~~~~~~f--~~~~i~~l~~~~~~~~G~~~~k~le~LiGrS~v 90 (94)
T 3b4s_A 24 FSQSWIKALEDSEFLAILRLLFHHIVTSESAHEF--AANGIDRLYKMVESQFGSGGDKELEWLIGRSLI 90 (94)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHSCCHHHH--HTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHccCCccHH--HHhHHHHHHHHHHHHhCccHHHHHHHHHhHHHH
Confidence 3455556788888888777777779987665432 1112222223333333333 5899999999863
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=34.82 E-value=3.8e+02 Score=27.27 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHhccCcchHHHHHh---h----------hhHHHHHHhhccc--hhHHHHHHHHHHHhh
Q 003365 611 NCVRIAAGEALAMLALDSKSNCHRILK---L----------KVVDKLVETLAVP--LVRVNAARILRNLCA 666 (826)
Q Consensus 611 ~~lr~~AGeALamLa~es~~Nc~~ILk---e----------~vi~~Lv~mL~d~--~~r~~AA~IL~nLC~ 666 (826)
..++..+-+-+.||++.+...-.+-|. . -++++|...|+|+ -.|..|.+-|.||+.
T Consensus 140 ~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~ 210 (253)
T 2db0_A 140 MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLAT 210 (253)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHH
Confidence 346666677777776433222222222 1 4789999999883 568888899999986
No 85
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=34.27 E-value=97 Score=32.45 Aligned_cols=137 Identities=15% Similarity=0.085 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhhCccchhhHHHHHHhhc--chhhhhHHHHHccCCCChHHHHHHHHHHHhccCCccccccccchhhH
Q 003365 516 LTVRRSLQLVKMLASTTGITGEHLRREISEV--VFTISNIRDILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGM 593 (826)
Q Consensus 516 ~iv~~SLkvL~rLas~~Ge~G~~LR~eIS~~--~f~lsNL~~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~i 593 (826)
.++...|++|.-|...-++.| +.+++. ..++.-|.+=|+|.+ +..++.+.+||+.+. .+.....+
T Consensus 102 ~v~~~~L~~L~~l~~~l~~~~----y~~~~~ea~~~lP~LveKlGd~k--~~vR~~~r~il~~l~-------~v~~~~~v 168 (266)
T 2of3_A 102 AALIKVLELCKVIVELIRDTE----TPMSQEEVSAFVPYLLLKTGEAK--DNMRTSVRDIVNVLS-------DVVGPLKM 168 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----CCCCHHHHHHHHHHHHHGGGCSS--HHHHHHHHHHHHHHH-------HHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc----ccchHHHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHH-------HHCCHHHH
Confidence 456678888877765544444 223332 235556666556655 889999999998884 23344556
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHHH-hccCcchHHHHHhhhhH---HHHHHhhcc--chhHHHHHHHHHHHhhh
Q 003365 594 LKELFNILFKEGMPENQNCVRIAAGEALAML-ALDSKSNCHRILKLKVV---DKLVETLAV--PLVRVNAARILRNLCAS 667 (826)
Q Consensus 594 I~~L~~iFl~~~~~~~~~~lr~~AGeALamL-a~es~~Nc~~ILke~vi---~~Lv~mL~d--~~~r~~AA~IL~nLC~~ 667 (826)
...++..|-+.+ ...|...-+.+.-+ -..... ....+ +.+...+.| ...|-.|-+-+-.++.|
T Consensus 169 ~~~l~~g~ksKN-----~R~R~e~l~~l~~li~~~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 169 TPMLLDALKSKN-----ARQRSECLLVIEYYITNAGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHGGGCSC-----HHHHHHHHHHHHHHHHHHCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC-----HHHHHHHHHHHHHHHHhcCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 778888664432 22333333333322 111111 11345 777777876 35777888888888887
Q ss_pred cccchhhhh
Q 003365 668 SGADCFNQL 676 (826)
Q Consensus 668 s~~e~~~~L 676 (826)
.++..+..+
T Consensus 238 ~Gd~v~k~l 246 (266)
T 2of3_A 238 EGDQMWKAA 246 (266)
T ss_dssp HTTHHHHHH
T ss_pred hhHHHHHHH
Confidence 777654443
No 86
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=28.53 E-value=83 Score=29.38 Aligned_cols=76 Identities=12% Similarity=0.186 Sum_probs=54.4
Q ss_pred chhHHHHHhhcCCCcchhhhhhHHHHHHhhCc-C-CchHHH-------HHhcc---CHHHHHHHHHHhCCCCcccHHHHH
Q 003365 333 DMVIFGMELLDSNSPDEQLIGARILRQFAMSK-R-FSDDTL-------QKIGI---NLSVIERFVEMLNWKDPQEEEIRR 400 (826)
Q Consensus 333 ~LVtFA~dll~S~S~~~qL~GvriL~~~l~~~-~-~~~~~L-------~kl~t---S~~~i~rLi~ML~wts~~d~eiR~ 400 (826)
.--.||..|+.|..++++--||.||..+++.. + .+.+-+ -|++. +.+-++.|+++ .|.+.+.+.
T Consensus 37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~----eP~n~QA~~ 112 (126)
T 1nzn_A 37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----EPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----CCCCHHHHH
Confidence 45678999999999999999999999999986 3 122222 24443 45666777764 677777777
Q ss_pred HHHHHHHHHhcc
Q 003365 401 SAAEILSKLAGK 412 (826)
Q Consensus 401 ~AArIva~LA~~ 412 (826)
+=..|-.+++.+
T Consensus 113 Lk~~i~~~i~kd 124 (126)
T 1nzn_A 113 LERLIDKAMKKD 124 (126)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 777776666653
No 87
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=23.22 E-value=89 Score=27.80 Aligned_cols=44 Identities=18% Similarity=0.358 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccCCCceEEecccchhHHhhhccc
Q 003365 377 NLSVIERFVEMLNWKDPQEEEIRRSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLQ 434 (826)
Q Consensus 377 S~~~i~rLi~ML~wts~~d~eiR~~AArIva~LA~~~~nsLrv~~iPGaiq~IsSLLd 434 (826)
.+..+..|++.|. ..|..+|..|++.+.++.. |.+++.+..+|+
T Consensus 71 ~~~a~~~L~~~L~---d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~ 114 (131)
T 1te4_A 71 DERAVEPLIKLLE---DDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAE 114 (131)
T ss_dssp SHHHHHHHHHHHH---HCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHh
Confidence 4678899999985 3457899999999999874 677888877775
No 88
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=22.56 E-value=4.2e+02 Score=29.38 Aligned_cols=74 Identities=19% Similarity=0.135 Sum_probs=53.9
Q ss_pred HHHHHHHHHhccCcchHHHHHhh--hhHHHHHHhhccchhHHHHHHHHHHHhhhcccchhhhhhhHHhHHHHHHHHHh
Q 003365 616 AAGEALAMLALDSKSNCHRILKL--KVVDKLVETLAVPLVRVNAARILRNLCASSGADCFNQLRGVTAAAPTILKAIT 691 (826)
Q Consensus 616 ~AGeALamLa~es~~Nc~~ILke--~vi~~Lv~mL~d~~~r~~AA~IL~nLC~~s~~e~~~~Lk~l~~alp~VL~~I~ 691 (826)
.||=.|-.=.+++++=|..=|++ .++-.++.+-.+|+..|..---|.|..+|-++ ..+|-.-+.|+|-.-+.|+
T Consensus 302 RaG~KLLLQVSDaksL~~t~L~e~LPFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~--VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 302 RAGCKLLLQVSDAKALAKTPLENILPFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQH--VKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHTTCGGGGTSCCTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHH--HHHHHHHTTHHHHHHHHHH
T ss_pred HhhhheeeeecchHHHhhccccccchHHHHHhccCCCcceEEecchHHHHHHhcccc--hHHHHhccCcHHHHHHHHh
Confidence 47888877778999999988888 67777888877889999999999999987664 1122223455555444444
No 89
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=21.44 E-value=3.6e+02 Score=26.95 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhcCCcccccccchhHHHHHhhcCCCcchhhh---------hh-------HHHHHHhhCcCCchHHH
Q 003365 308 ISIRRFFYDAYSKCVNGSIFDGLKMDMVIFGMELLDSNSPDEQLI---------GA-------RILRQFAMSKRFSDDTL 371 (826)
Q Consensus 308 ~sv~~Y~~~a~~~C~~g~vf~~~~~~LVtFA~dll~S~S~~~qL~---------Gv-------riL~~~l~~~~~~~~~L 371 (826)
+-...||.++-+.|++ ++-.-|.++|.+|+.=.||- || ..|..++ ++.
T Consensus 7 ~Elq~yf~~It~a~~~---------~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm-------~~~ 70 (196)
T 4atg_A 7 KELQLYFDKILSMIKS---------DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCI-------ALY 70 (196)
T ss_dssp HHHHHHHHHHHHHHTS---------TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHh---------HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHH-------HHH
Q ss_pred HHhccCH---------HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh
Q 003365 372 QKIGINL---------SVIERFVEMLNWKDPQEEEIRRSAAEILSKLA 410 (826)
Q Consensus 372 ~kl~tS~---------~~i~rLi~ML~wts~~d~eiR~~AArIva~LA 410 (826)
+.+..++ .-+..++.-+=-++-....+|.+||++++++.
T Consensus 71 ~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 71 FSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp HHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
No 90
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=20.96 E-value=7e+02 Score=25.70 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=56.5
Q ss_pred hhhHH-HHHccCCCChHHHHHHHHHHHhccCCccccccccchhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhccC
Q 003365 550 ISNIR-DILLHGEKHPLLQKLGIDILTSLALEEDATERIGGTGGMLKELFNILFKEGMPENQNCVRIAAGEALAMLALDS 628 (826)
Q Consensus 550 lsNL~-~IL~~~~~~~eLq~lAi~ILt~LA~D~~~re~Ig~~~~iI~~L~~iFl~~~~~~~~~~lr~~AGeALamLa~es 628 (826)
+.||. +|+.-..+-++..+.|-++++.+..+ .+ ..|...+... +.+++|..|..+|..+ .
T Consensus 39 ~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~~~-----------~~-~~la~~L~~~----~~deVR~~Av~lLg~~-~-- 99 (240)
T 3l9t_A 39 VARLEKDFSLIEHGFKEEEQRALTDYKSNDGE-----------YI-KKLAFLAYQS----DVYQVRMYAVFLFGYL-S-- 99 (240)
T ss_dssp HHHHHHHHTC-----CHHHHHHHHHHHHSCHH-----------HH-HHHHHHHHTC----SSHHHHHHHHHHHHHT-T--
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhCCHH-----------HH-HHHHHHHHhC----cchHHHHHHHHHHHhc-c--
Confidence 44553 34432223467778899999887411 11 2344434443 4578999999988776 2
Q ss_pred cchHHHHHhhhhHHHHHHhhc-cc--hhHHHHHHHHHHHhhhcccc
Q 003365 629 KSNCHRILKLKVVDKLVETLA-VP--LVRVNAARILRNLCASSGAD 671 (826)
Q Consensus 629 ~~Nc~~ILke~vi~~Lv~mL~-d~--~~r~~AA~IL~nLC~~s~~e 671 (826)
... +.+..+...+. |+ ..++++|..++.+|....++
T Consensus 100 --~~~-----~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe 138 (240)
T 3l9t_A 100 --KDK-----EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK 138 (240)
T ss_dssp --TSH-----HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred --CcH-----HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH
Confidence 112 34455555343 44 57889999999999754444
Done!